Implications of lack-of-ergodicity in 2D Potts model
NASA Astrophysics Data System (ADS)
Ota, Smita
2015-03-01
Microcanonical Monte Carlo simulation is used to study two dimensional (2D) q state Potts model. We consider a 2D square lattice having NxN spins with periodic boundary condition and simulated the system with N =15 and q =10. The demon energy distribution is found to be exponential for high system energy and large system size. For smaller system size and above the first order transition the demon energy distribution is found to deviate from exp(- βED) and has the form exp(- βED + γ ED2). Here β = 1/kBT and kB is the Boltzmann constant. It is found that γ is finite at higher temperatures. As the system energy is reduced γ becomes zero near the first order transition. It is found that during cooling γ changes sign from negative to positive and then to negative again near the 1st order transition. Therefore the demon energy distribution becomes exp(- βED) (or ergodic) at two values of system energy near the 1st order transition. Further cooling or at still lower temperatures the system shows lack of ergodicity. However, difference in heating cooling curves are apparent in E vs γ. The system energies for which γ is zero during cooling can represent the 'ergodic' states. This can be related to the two-level systems observed in glasses at low temperatures.
NASA Astrophysics Data System (ADS)
Komura, Yukihiro; Okabe, Yutaka
2014-03-01
We present sample CUDA programs for the GPU computing of the Swendsen-Wang multi-cluster spin flip algorithm. We deal with the classical spin models; the Ising model, the q-state Potts model, and the classical XY model. As for the lattice, both the 2D (square) lattice and the 3D (simple cubic) lattice are treated. We already reported the idea of the GPU implementation for 2D models (Komura and Okabe, 2012). We here explain the details of sample programs, and discuss the performance of the present GPU implementation for the 3D Ising and XY models. We also show the calculated results of the moment ratio for these models, and discuss phase transitions. Catalogue identifier: AERM_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AERM_v1_0.html Program obtainable from: CPC Program Library, Queen’s University, Belfast, N. Ireland Licensing provisions: Standard CPC licence, http://cpc.cs.qub.ac.uk/licence/licence.html No. of lines in distributed program, including test data, etc.: 5632 No. of bytes in distributed program, including test data, etc.: 14688 Distribution format: tar.gz Programming language: C, CUDA. Computer: System with an NVIDIA CUDA enabled GPU. Operating system: System with an NVIDIA CUDA enabled GPU. Classification: 23. External routines: NVIDIA CUDA Toolkit 3.0 or newer Nature of problem: Monte Carlo simulation of classical spin systems. Ising, q-state Potts model, and the classical XY model are treated for both two-dimensional and three-dimensional lattices. Solution method: GPU-based Swendsen-Wang multi-cluster spin flip Monte Carlo method. The CUDA implementation for the cluster-labeling is based on the work by Hawick et al. [1] and that by Kalentev et al. [2]. Restrictions: The system size is limited depending on the memory of a GPU. Running time: For the parameters used in the sample programs, it takes about a minute for each program. Of course, it depends on the system size, the number of Monte Carlo steps, etc. References: [1] K
BTF Potts compound texture model
NASA Astrophysics Data System (ADS)
Haindl, Michal; Reměs, Václav; Havlíček, Vojtěch
2015-03-01
This paper introduces a method for modeling mosaic-like textures using a multispectral parametric Bidirectional Texture Function (BTF) compound Markov random field model (CMRF). The primary purpose of our synthetic texture approach is to reproduce, compress, and enlarge a given measured texture image so that ideally both natural and synthetic texture will be visually indiscernible, but the model can be easily applied for BFT material editing. The CMRF model consist of several sub-models each having different characteristics along with an underlying structure model which controls transitions between these sub models. The proposed model uses the Potts random field for distributing local texture models in the form of analytically solvable wide-sense BTF Markovian representation for single regions among the fields of a mosaic approximated by the Voronoi diagram. The control field of the BTF-CMRF is generated by the Potts random field model build on top of the adjacency graph of a measured mosaic. The compound random field synthesis combines the modified fast Swendsen- Wang Markov Chain Monte Carlo sampling of the hierarchical Potts MRF part with the fast and analytical synthesis of single regional BTF MRFs. The local texture regions (not necessarily continuous) are represented by an analytical BTF model which consists of single factors modeled by the adaptive 3D causal auto-regressive (3DCAR) random field model which can be analytically estimated as well as synthesized. The visual quality of the resulting complex synthetic textures generally surpasses the outputs of the previously published simpler non-compound BTF-MRF models.
Dilute Potts model in two dimensions.
Qian, Xiaofeng; Deng, Youjin; Blöte, Henk W J
2005-11-01
We study the two-dimensional dilute q-state Potts model by means of transfer-matrix and Monte Carlo methods. Using the random-cluster representation, we include noninteger values of q. We locate phase transitions in the three-dimensional parameter space of q, the Potts coupling K>0, and the chemical potential of the vacancies. The critical plane is found to contain a line of fixed points that divides into a critical branch and a tricritical one, just as predicted by the renormalization scenario formulated by Nienhuis et al for the dilute Potts model. The universal properties along the line of fixed points agree with the theoretical predictions. We also determine the density of the vacancies along these branches. For q=2-squareroot of 2 we obtain the phase diagram in a three-dimensional parameter space that also includes a coupling V> or = 0 between the vacancies. For q=2, the latter space contains the Blume-Capel model as a special case. We include a determination of the tricritical point of this model, as well as an analysis of percolation clusters constructed on tricritical Potts configurations for noninteger q. This percolation study is based on Monte Carlo algorithms that include local updates flipping between Potts sites and vacancies. The bond updates are performed locally for and by means of a cluster algorithm for q>1. The updates for q>1 use a number of operations per site independent of the system size. PMID:16383713
Dilute Potts model in two dimensions
NASA Astrophysics Data System (ADS)
Qian, Xiaofeng; Deng, Youjin; Blöte, Henk W. J.
2005-11-01
We study the two-dimensional dilute q -state Potts model by means of transfer-matrix and Monte Carlo methods. Using the random-cluster representation, we include noninteger values of q . We locate phase transitions in the three-dimensional parameter space of q , the Potts coupling K⩾0 , and the chemical potential of the vacancies. The critical plane is found to contain a line of fixed points that divides into a critical branch and a tricritical one, just as predicted by the renormalization scenario formulated by Nienhuis for the dilute Potts model. The universal properties along the line of fixed points agree with the theoretical predictions. We also determine the density of the vacancies along these branches. For q=2-2 we obtain the phase diagram in a three-dimensional parameter space that also includes a coupling V⩾0 between the vacancies. For q=2 , the latter space contains the Blume-Capel model as a special case. We include a determination of the tricritical point of this model, as well as an analysis of percolation clusters constructed on tricritical Potts configurations for noninteger q . This percolation study is based on Monte Carlo algorithms that include local updates flipping between Potts sites and vacancies. The bond updates are performed locally for q<1 and by means of a cluster algorithm for q>1 . The updates for q>1 use a number of operations per site independent of the system size.
Potts-model critical manifolds revisited
NASA Astrophysics Data System (ADS)
Scullard, Christian R.; Lykke Jacobsen, Jesper
2016-03-01
We compute critical polynomials for the q-state Potts model on the Archimedean lattices, using a parallel implementation of the algorithm of Jacobsen (2014 J. Phys. A: Math. Theor 47 135001) that gives us access to larger sizes than previously possible. The exact polynomials are computed for bases of size 6 × 6 unit cells, and the root in the temperature variable v={{{e}}}K-1 is determined numerically at q = 1 for bases of size 8 × 8. This leads to improved results for bond percolation thresholds, and for the Potts-model critical manifolds in the real (q, v) plane. In the two most favourable cases, we find now the kagome-lattice threshold to eleven digits and that of the (3,{12}2) lattice to thirteen. Our critical manifolds reveal many interesting features in the antiferromagnetic region of the Potts model, and determine accurately the extent of the Berker-Kadanoff phase for the lattices studied.
Phase Transitions in Delaunay Potts Models
NASA Astrophysics Data System (ADS)
Adams, Stefan; Eyers, Michael
2016-01-01
We establish phase transitions for certain classes of continuum Delaunay multi-type particle systems (continuum Potts models) with infinite range repulsive interaction between particles of different type. In one class of the Delaunay Potts models studied the repulsive interaction is a triangle (multi-body) interaction whereas in the second class the interaction is between pairs (edges) of the Delaunay graph. The result for the edge model is an extension of finite range results in Bertin et al. (J Stat Phys 114(1-2):79-100, 2004) for the Delaunay graph and in Georgii and Häggström (Commun Math Phys 181:507-528, 1996) for continuum Potts models to an infinite range repulsion decaying with the edge length. This is a proof of an old conjecture of Lebowitz and Lieb. The repulsive triangle interactions have infinite range as well and depend on the underlying geometry and thus are a first step towards studying phase transitions for geometry-dependent multi-body systems. Our approach involves a Delaunay random-cluster representation analogous to the Fortuin-Kasteleyn representation of the Potts model. The phase transitions manifest themselves in the percolation of the corresponding random-cluster model. Our proofs rely on recent studies (Dereudre et al. in Probab Theory Relat Fields 153:643-670, 2012) of Gibbs measures for geometry-dependent interactions.
Phenomenological theory of the Potts model evaporation-condensation transition
NASA Astrophysics Data System (ADS)
Ibáñez-Berganza, M.
2016-01-01
We present a phenomenological theory describing the finite-size evaporation-condensation transition of the q-state Potts model in the microcanonical ensemble. Our arguments rely on the existence of an exponent σ, relating the surface and the volume of the condensed phase droplet. The evaporation-condensation transition temperature and energy converge to their infinite-size values with the same power, a=(1-σ)/(2-σ) , of the inverse of the system size. For the 2D Potts model we show, by means of efficient simulations up to q = 24 and 10242 sites, that the exponent a is compatible with 1/4, assuming assymptotic finite-size convergence. While this value cannot be addressed by the evaporation-condensation theory developed for the Ising model, it is obtained in the present scheme if σ=2/3 , in agreement with previous theoretical guesses. The connection with the phenomenon of metastability in the canonical ensemble is also discussed.
Critical behavior of the q = 3 , 4-Potts model on quasiperiodic decagonal lattices
NASA Astrophysics Data System (ADS)
Ferraz, Carlos Handrey Araujo
2015-12-01
In this study, we performed Monte Carlo simulations of the q = 3 , 4-Potts model on quasiperiodic decagonal lattices (QDL) to assess the critical behavior of these systems. Using the single histogram technique in conjunction with the finite-size scaling analysis, we estimate the infinite lattice critical temperatures and the leading critical exponents for q = 3 and q = 4 states. Our estimates for the critical exponents on QDL are in good agreement with the exact values on 2D periodic lattices, supporting the claim that both the q = 3 and q = 4 Potts model on quasiperiodic lattices belong to the same universality class as those on 2D periodic lattices.
Duality and Fisher zeros in the two-dimensional Potts model on a square lattice
NASA Astrophysics Data System (ADS)
Astorino, Marco; Canfora, Fabrizio
2010-05-01
A phenomenological approach to the ferromagnetic two-dimensional (2D) Potts model on square lattice is proposed. Our goal is to present a simple functional form that obeys the known properties possessed by the free energy of the q -state Potts model. The duality symmetry of the 2D Potts model together with the known results on its critical exponent α allows us to fix consistently the details of the proposed expression for the free energy. The agreement of the analytic ansatz with numerical data in the q=3 case is very good at high and low temperatures as well as at the critical point. It is shown that the q>4 cases naturally fit into the same scheme and that one should also expect a good agreement with numerical data. The limiting q=4 case is shortly discussed.
Non compact continuum limit of two coupled Potts models
NASA Astrophysics Data System (ADS)
Vernier, Éric; Lykke Jacobsen, Jesper; Saleur, Hubert
2014-10-01
We study two Q-state Potts models coupled by the product of their energy operators, in the regime 2 < Q ⩽ 4 where the coupling is relevant. A particular choice of weights for the square lattice is shown to be equivalent to the integrable a_3(2) vertex model. It corresponds to a selfdual system of two antiferromagnetic Potts models, coupled ferromagnetically. We derive the Bethe ansatz equations and study them numerically for two arbitrary twist angles. The continuum limit is shown to involve two compact bosons and one non compact boson, with discrete states emerging from the continuum at appropriate twists. The non compact boson entails strong logarithmic corrections to the finite-size behaviour of the scaling levels, an understanding of which allows us to correct an earlier proposal for some of the critical exponents. In particular, we infer the full set of magnetic scaling dimensions (watermelon operators) of the Potts model.
Series analysis of Q-state checkerboard Potts models
Hansel, D.; Maillard, J.M.
1988-12-01
The series analysis of the low temperature expansion of the checkerboard q-state Potts model in a magnetic field initiated in two previous papers is continued. In particular algebraic varieties of the parameter space (corresponding or generalizing the so-called disorder solutions), the checkerboard Potts model and its Bethe approximation are indistinguishable as far as one is concerned with the partition function and its first order derivatives. The difference between the two models occurs for higher order derivatives. In particular one gives the exact expression of the (low temperature expansion of the) susceptibility of the checkerboard Ising model in zero magnetic field on one of these varieties.
Simulation of the 3-state Potts model with chemical potential
Mercado, Ydalia Delgado; Gattringer, Christof; Evertz, Hans Gerd
2011-05-23
The 3-state Potts model with chemical potential is mapped to a flux representation where the complex action problem is resolved. We perform a Monte Carlo simulation based on a worm algorithm to study the phase diagram of the model. Our results shed light on the role which center symmetry and its breaking play for the QCD phase diagram.
The Potts model on a Bethe lattice with nonmagnetic impurities
Semkin, S. V. Smagin, V. P.
2015-10-15
We have obtained a solution for the Potts model on a Bethe lattice with mobile nonmagnetic impurities. A method is proposed for constructing a “pseudochaotic” impurity distribution by a vanishing correlation in the arrangement of impurity atoms for the nearest sites. For a pseudochaotic impurity distribution, we obtained the phase-transition temperature, magnetization, and spontaneous magnetization jumps at the phase-transition temperature.
A hybrid parallel framework for the cellular Potts model simulations
Jiang, Yi; He, Kejing; Dong, Shoubin
2009-01-01
The Cellular Potts Model (CPM) has been widely used for biological simulations. However, most current implementations are either sequential or approximated, which can't be used for large scale complex 3D simulation. In this paper we present a hybrid parallel framework for CPM simulations. The time-consuming POE solving, cell division, and cell reaction operation are distributed to clusters using the Message Passing Interface (MPI). The Monte Carlo lattice update is parallelized on shared-memory SMP system using OpenMP. Because the Monte Carlo lattice update is much faster than the POE solving and SMP systems are more and more common, this hybrid approach achieves good performance and high accuracy at the same time. Based on the parallel Cellular Potts Model, we studied the avascular tumor growth using a multiscale model. The application and performance analysis show that the hybrid parallel framework is quite efficient. The hybrid parallel CPM can be used for the large scale simulation ({approx}10{sup 8} sites) of complex collective behavior of numerous cells ({approx}10{sup 6}).
Exact Potts model partition functions on ladder graphs
NASA Astrophysics Data System (ADS)
Shrock, Robert
2000-08-01
We present exact calculations of the partition function Z of the q-state Potts model and its generalization to real q, for arbitrary temperature on n-vertex ladder graphs, i.e., strips of the square lattice with width Ly=2 and arbitrary length Lx, with free, cyclic, and Möbius longitudinal boundary conditions. These partition functions are equivalent to Tutte/Whitney polynomials for these graphs. The free energy is calculated exactly for the infinite-length limit of these ladder graphs and the thermodynamics is discussed. By comparison with strip graphs of other widths, we analyze how the singularities at the zero-temperature critical point of the ferromagnet on infinite-length, finite-width strips depend on the width. We point out and study the following noncommutativity at certain special values q s: lim n→∞ limq→q s Z 1/n≠ limq→q s limn→∞ Z 1/n. It is shown that the Potts antiferromagnet on both the infinite-length line and ladder graphs with cyclic or Möbius boundary conditions exhibits a phase transition at finite temperature if 0< q<2, but with unphysical properties, including negative specific heat and non-existence, in the low-temperature phase, of an n→∞ limit for thermodynamic functions that is independent of boundary conditions. Considering the full generalization to arbitrary complex q and temperature, we determine the singular locus B in the corresponding C2 space, arising as the accumulation set of partition function zeros as n→∞. In particular, we study the connection with the T=0 limit of the Potts antiferromagnet where B reduces to the accumulation set of chromatic zeros. Certain properties of the complex-temperature phase diagrams are shown to exhibit close connections with those of the model on the square lattice, showing that exact solutions on infinite-length strips provide a way of gaining insight into these complex-temperature phase diagrams.
Interplay between sign problem and Z3 symmetry in three-dimensional Potts models
NASA Astrophysics Data System (ADS)
Hirakida, Takehiro; Kouno, Hiroaki; Takahashi, Junichi; Yahiro, Masanobu
2016-07-01
We construct four kinds of Z3 -symmetric three-dimensional (3D) Potts models, each with a different number of states at each site on a 3D lattice, by extending the 3D 3-state Potts model. Comparing the ordinary Potts model with the four Z3-symmetric Potts models, we investigate how Z3 symmetry affects the sign problem and see how the deconfinement transition line changes in the μ -κ plane as the number of states increases, where μ (κ ) plays a role of chemical potential (temperature) in the models. We find that the sign problem is almost cured by imposing Z3 symmetry. This mechanism may happen in Z3-symmetric QCD-like theory. We also show that the deconfinement transition line has stronger μ dependence with respect to increasing the number of states.
Hexagon and pentagon identities for the Z sub 3 Potts model
Ryang, S. )
1991-04-15
Investigating the transformation properties of the conformal blocks in the {ital Z}{sub 3} Potts model we derive some braid matrices. From the obtained braid matrices we explicitly show how the hexagon and pentagon identities are satisfied.
Multiscale Model of Colorectal Cancer Using the Cellular Potts Framework
Osborne, James M
2015-01-01
Colorectal cancer (CRC) is one of the major causes of death in the developed world and forms a canonical example of tumorigenesis. CRC arises from a string of mutations of individual cells in the colorectal crypt, making it particularly suited for multiscale multicellular modeling, where mutations of individual cells can be clearly represented and their effects readily tracked. In this paper, we present a multicellular model of the onset of colorectal cancer, utilizing the cellular Potts model (CPM). We use the model to investigate how, through the modification of their mechanical properties, mutant cells colonize the crypt. Moreover, we study the influence of mutations on the shape of cells in the crypt, suggesting possible cell- and tissue-level indicators for identifying early-stage cancerous crypts. Crucially, we discuss the effect that the motility parameters of the model (key factors in the behavior of the CPM) have on the distribution of cells within a homeostatic crypt, resulting in an optimal parameter regime that accurately reflects biological assumptions. In summary, the key results of this paper are 1) how to couple the CPM with processes occurring on other spatial scales, using the example of the crypt to motivate suitable motility parameters; 2) modeling mutant cells with the CPM; 3) and investigating how mutations influence the shape of cells in the crypt. PMID:26461973
A node-based version of the cellular Potts model.
Scianna, Marco; Preziosi, Luigi
2016-09-01
The cellular Potts model (CPM) is a lattice-based Monte Carlo method that uses an energetic formalism to describe the phenomenological mechanisms underlying the biophysical problem of interest. We here propose a CPM-derived framework that relies on a node-based representation of cell-scale elements. This feature has relevant consequences on the overall simulation environment. First, our model can be implemented on any given domain, provided a proper discretization (which can be regular or irregular, fixed or time evolving). Then, it allowed an explicit representation of cell membranes, whose displacements realistically result in cell movement. Finally, our node-based approach can be easily interfaced with continuous mechanics or fluid dynamics models. The proposed computational environment is here applied to some simple biological phenomena, such as cell sorting and chemotactic migration, also in order to achieve an analysis of the performance of the underlying algorithm. This work is finally equipped with a critical comparison between the advantages and disadvantages of our model with respect to the traditional CPM and to some similar vertex-based approaches. PMID:27416549
Potts models with magnetic field: Arithmetic, geometry, and computation
NASA Astrophysics Data System (ADS)
Dasu, Shival; Marcolli, Matilde
2015-11-01
We give a sheaf theoretic interpretation of Potts models with external magnetic field, in terms of constructible sheaves and their Euler characteristics. We show that the polynomial countability question for the hypersurfaces defined by the vanishing of the partition function is affected by changes in the magnetic field: elementary examples suffice to see non-polynomially countable cases that become polynomially countable after a perturbation of the magnetic field. The same recursive formula for the Grothendieck classes, under edge-doubling operations, holds as in the case without magnetic field, but the closed formulae for specific examples like banana graphs differ in the presence of magnetic field. We give examples of computation of the Euler characteristic with compact support, for the set of real zeros, and find a similar exponential growth with the size of the graph. This can be viewed as a measure of topological and algorithmic complexity. We also consider the computational complexity question for evaluations of the polynomial, and show both tractable and NP-hard examples, using dynamic programming.
Jason D. Hales; Veena Tikare
2014-04-01
The Used Fuel Disposition (UFD) program has initiated a project to develop a hydride formation modeling tool using a hybrid Pottsphase field approach. The Potts model is incorporated in the SPPARKS code from Sandia National Laboratories. The phase field model is provided through MARMOT from Idaho National Laboratory.
Marginal dimensions of the Potts model with invisible states
NASA Astrophysics Data System (ADS)
Krasnytska, M.; Sarkanych, P.; Berche, B.; Holovatch, Yu; Kenna, R.
2016-06-01
We reconsider the mean-field Potts model with q interacting and r non-interacting (invisible) states. The model was recently introduced to explain discrepancies between theoretical predictions and experimental observations of phase transitions in some systems where the Z q -symmetry is spontaneously broken. We analyse the marginal dimensions of the model, i.e., the value of r at which the order of the phase transition changes. In the q = 2 case, we determine that value to be {r}{{c}}=3.65(5); there is a second-order phase transition there when r\\lt {r}{{c}} and a first-order one at r\\gt {r}{{c}}. We also analyse the region 1≤slant q\\lt 2 and show that the change from second to first order there is manifest through a new mechanism involving two marginal values of r. The q = 1 limit gives bond percolation. Above the lower value r c1, the order parameters exhibit discontinuities at temperature \\tilde{t} below a critical value t c. The larger value r c2 marks the point at which the phase transition at t c changes from second to first order. Thus, for {r}{{c}1}\\lt r\\lt {r}{{c}2}, the transition at t c remains second order while at \\tilde{t} the system undergoes a first order phase transition. As r increases further, \\tilde{t} increases, bringing the discontinuity closer to t c. Finally, when r exceeds r c2 \\tilde{t} coincides with t c and the phase transition becomes first order. This new mechanism indicates how the discontinuity characteristic of first order phase transitions emerges.
Cyclic period-3 window in antiferromagnetic potts and Ising models on recursive lattices
NASA Astrophysics Data System (ADS)
Ananikian, N. S.; Ananikyan, L. N.; Chakhmakhchyan, L. A.
2011-09-01
The magnetic properties of the antiferromagnetic Potts model with two-site interaction and the antiferromagnetic Ising model with three-site interaction on recursive lattices have been studied. A cyclic period-3 window has been revealed by the recurrence relation method in the antiferromagnetic Q-state Potts model on the Bethe lattice (at Q < 2) and in the antiferromagnetic Ising model with three-site interaction on the Husimi cactus. The Lyapunov exponents have been calculated, modulated phases and a chaotic regime in the cyclic period-3 window have been found for one-dimensional rational mappings determined the properties of these systems.
A Bayesian non-parametric Potts model with application to pre-surgical FMRI data.
Johnson, Timothy D; Liu, Zhuqing; Bartsch, Andreas J; Nichols, Thomas E
2013-08-01
The Potts model has enjoyed much success as a prior model for image segmentation. Given the individual classes in the model, the data are typically modeled as Gaussian random variates or as random variates from some other parametric distribution. In this article, we present a non-parametric Potts model and apply it to a functional magnetic resonance imaging study for the pre-surgical assessment of peritumoral brain activation. In our model, we assume that the Z-score image from a patient can be segmented into activated, deactivated, and null classes, or states. Conditional on the class, or state, the Z-scores are assumed to come from some generic distribution which we model non-parametrically using a mixture of Dirichlet process priors within the Bayesian framework. The posterior distribution of the model parameters is estimated with a Markov chain Monte Carlo algorithm, and Bayesian decision theory is used to make the final classifications. Our Potts prior model includes two parameters, the standard spatial regularization parameter and a parameter that can be interpreted as the a priori probability that each voxel belongs to the null, or background state, conditional on the lack of spatial regularization. We assume that both of these parameters are unknown, and jointly estimate them along with other model parameters. We show through simulation studies that our model performs on par, in terms of posterior expected loss, with parametric Potts models when the parametric model is correctly specified and outperforms parametric models when the parametric model in misspecified. PMID:22627277
Potts model on directed small-world Voronoi-Delaunay lattices
NASA Astrophysics Data System (ADS)
Marques, R. M.; Lima, F. W. S.; Costa Filho, Raimundo N.
2016-06-01
The critical properties of the Potts model with q = 3 and 4 states in two-dimensions on directed small-world Voronoi-Delaunay random lattices with quenched connectivity disorder are investigated. This disordered system is simulated by applying the Monte Carlo update heat bath algorithm. The Potts model on these directed small-world random lattices presents in fact a second-order phase transition with new critical exponents for q = 3 and value of the rewiring probability p = 0.01, but for q = 4 the system exhibits only a first-order phase transition independent of p (0 < p < 1).
NASA Astrophysics Data System (ADS)
Chang, Shu-Chiuan; Shrock, Robert
2001-07-01
The q-state Potts model partition function (equivalent to the Tutte polynomial) for a lattice strip of fixed width Ly and arbitrary length Lx has the form Z(G,q,v)=∑ j=1N Z,G,λ c Z,G,j(λ Z,G,j) L x, where v is a temperature-dependent variable. The special case of the zero-temperature antiferromagnet ( v=-1) is the chromatic polynomial P( G, q). Using coloring and transfer matrix methods, we give general formulas for C X,G=∑ j=1N X,G,λ c X,G,j for X= Z, P on cyclic and Möbius strip graphs of the square and triangular lattice. Combining these with a general expression for the (unique) coefficient cZ, G, j of degree d in q: c (d)=U 2d( q/2) , where Un( x) is the Chebyshev polynomial of the second kind, we determine the number of λZ, G, j's with coefficient c( d) in Z( G, q, v) for these cyclic strips of width Ly to be n Z(L y,d)=(2d+1)(L y+d+1) -1{2L y}/{L y-d } for 0⩽ d⩽ Ly and zero otherwise. For both cyclic and Möbius strips of these lattices, the total number of distinct eigenvalues λZ, G, j is calculated to be N Z,L y,λ = {2L y}/{L y}. Results are also presented for the analogous numbers nP( Ly, d) and NP, Ly, λ for P( G, q). We find that nP( Ly,0)= nP( Ly-1,1)= MLy-1 (Motzkin number), nZ( Ly,0)= CLy (the Catalan number), and give an exact expression for NP, Ly, λ. Our results for NZ, Ly, λ and NP, Ly, λ apply for both the cyclic and Möbius strips of both the square and triangular lattices; we also point out the interesting relations NZ, Ly, λ=2 NDA, tri, Ly and NP, Ly, λ=2 NDA, sq, Ly, where NDA, Λ, n denotes the number of directed lattice animals on the lattice Λ. We find the asymptotic growths NZ, Ly, λ∼ Ly-1/24 Ly and NP, Ly, λ∼ Ly-1/23 Ly as Ly→∞. Some general geometric identities for Potts model partition functions are also presented.
Parallel family trees for transfer matrices in the Potts model
NASA Astrophysics Data System (ADS)
Navarro, Cristobal A.; Canfora, Fabrizio; Hitschfeld, Nancy; Navarro, Gonzalo
2015-02-01
The computational cost of transfer matrix methods for the Potts model is related to the question in how many ways can two layers of a lattice be connected? Answering the question leads to the generation of a combinatorial set of lattice configurations. This set defines the configuration space of the problem, and the smaller it is, the faster the transfer matrix can be computed. The configuration space of generic (q , v) transfer matrix methods for strips is in the order of the Catalan numbers, which grows asymptotically as O(4m) where m is the width of the strip. Other transfer matrix methods with a smaller configuration space indeed exist but they make assumptions on the temperature, number of spin states, or restrict the structure of the lattice. In this paper we propose a parallel algorithm that uses a sub-Catalan configuration space of O(3m) to build the generic (q , v) transfer matrix in a compressed form. The improvement is achieved by grouping the original set of Catalan configurations into a forest of family trees, in such a way that the solution to the problem is now computed by solving the root node of each family. As a result, the algorithm becomes exponentially faster than the Catalan approach while still highly parallel. The resulting matrix is stored in a compressed form using O(3m ×4m) of space, making numerical evaluation and decompression to be faster than evaluating the matrix in its O(4m ×4m) uncompressed form. Experimental results for different sizes of strip lattices show that the parallel family trees (PFT) strategy indeed runs exponentially faster than the Catalan Parallel Method (CPM), especially when dealing with dense transfer matrices. In terms of parallel performance, we report strong-scaling speedups of up to 5.7 × when running on an 8-core shared memory machine and 28 × for a 32-core cluster. The best balance of speedup and efficiency for the multi-core machine was achieved when using p = 4 processors, while for the cluster
An improvement of extremality regions for Gibbs measures of the Potts model on a Cayley tree
NASA Astrophysics Data System (ADS)
Haydarov, Farhod; Khakimov, Rustam
2016-03-01
We give a condition of extemelity for translation-invariant Gibbs measures of q—state Potts model on a Cayley tree. We'll improve the regions of extremality for some measures considered in [14]. Moreover, some results in [14] are generalized.
Phase transitions of the q-state Potts model on multiply-laced Sierpinski gaskets
NASA Astrophysics Data System (ADS)
Tian, Liang; Ma, Hui; Guo, Wenan; Tang, Lei-Han
2013-05-01
We present an exact solution of the q-state Potts model on a class of generalized Sierpinski fractal lattices. The model is shown to possess an ordered phase at low temperatures and a continuous transition to the high temperature disordered phase at any q ≥ 1. Multicriticality is observed in the presence of a symmetry-breaking field. Exact renormalization group analysis yields the phase diagram of the model and a complete set of critical exponents at various transitions.
Fluctuation complexity of agent-based financial time series model by stochastic Potts system
NASA Astrophysics Data System (ADS)
Hong, Weijia; Wang, Jun
2015-03-01
Financial market is a complex evolved dynamic system with high volatilities and noises, and the modeling and analyzing of financial time series are regarded as the rather challenging tasks in financial research. In this work, by applying the Potts dynamic system, a random agent-based financial time series model is developed in an attempt to uncover the empirical laws in finance, where the Potts model is introduced to imitate the trading interactions among the investing agents. Based on the computer simulation in conjunction with the statistical analysis and the nonlinear analysis, we present numerical research to investigate the fluctuation behaviors of the proposed time series model. Furthermore, in order to get a robust conclusion, we consider the daily returns of Shanghai Composite Index and Shenzhen Component Index, and the comparison analysis of return behaviors between the simulation data and the actual data is exhibited.
Graphical Representations for Ising and Potts Models in General External Fields
NASA Astrophysics Data System (ADS)
Cioletti, Leandro; Vila, Roberto
2016-01-01
This work is concerned with the theory of graphical representation for the Ising and Potts models over general lattices with non-translation invariant external field. We explicitly describe in terms of the random-cluster representation the distribution function and, consequently, the expected value of a single spin for the Ising and q-state Potts models with general external fields. We also consider the Gibbs states for the Edwards-Sokal representation of the Potts model with non-translation invariant magnetic field and prove a version of the FKG inequality for the so called general random-cluster model (GRC model) with free and wired boundary conditions in the non-translation invariant case. Adding the amenability hypothesis on the lattice, we obtain the uniqueness of the infinite connected component and the almost sure quasilocality of the Gibbs measures for the GRC model with such general magnetic fields. As a final application of the theory developed, we show the uniqueness of the Gibbs measures for the ferromagnetic Ising model with a positive power-law decay magnetic field with small enough power, as conjectured in Bissacot et al. (Commun Math Phys 337: 41-53, 2015).
Lattice models of glasses and Potts models for community detection
NASA Astrophysics Data System (ADS)
Darst, Richard K.
In Part I, we construct a configurationally constrained lattice glass model following the example of Biroli and Mézard (Phys. Rev. Lett., 82, 025501 (2001)), which we denote t154. By examining the relaxation, atomic motion, Stokes-Einstein relationship violation, time-dependent displacement (van Hove function), wavevector-dependent relaxation, and multi-point correlations S4 and χ4 , we can show that this new model satisfies all minimal requirements set by the observed phenomena of dynamical heterogeneity of supercooled liquids, though with a drastically different theoretical basis from existing lattice models of glasses based on kinetic facilitation. We then proceed to perform a more detailed comparison between lattice glass models, including t154 and a model by Ciamarra et. al. (Phys. Rev. E 68 066111 (2003)), with traditional facilitated models. We study two forms of dynamical sensitivity: sensitivity to boundary conditions, and a sensitivity to initial conditions. By comparison to atomistic computer simulation, we find evidence that the lattice glass models better describe glassy behavior. We conclude by discussing the implications of our findings for contrasting theories of the glass transition. In Part II, we change our focus and examine community detection in graphs from a theoretical standpoint. Many disparate community definitions have been proposed, however except for one, few have been analyzed in any great detail. In this work, we, for the first time, formally study a definition based on internal edge density. Using the concept that internal edge density is the fraction of intra-community edges relative to the maximal number of intra-community edges, we produce a rich framework to use as the basis of community detection. We discuss its use in local and global community detection algorithms, and how our methods can extend to overlapping and hierarchical communities, and weighted, directed, and multi-graphs. In order to validate our definition, we use
CSOS models descending from chiral Potts models: degeneracy of the eigenspace and loop algebra
NASA Astrophysics Data System (ADS)
Au-Yang, Helen; Perk, Jacques H. H.
2016-04-01
Monodromy matrices of the {{\\boldsymbol{τ }}}2\\phantom{^{\\prime }} model are known to satisfy a Yang-Baxter equation with a six-vertex R-matrix as the intertwiner. The commutation relations of the elements of the monodromy matrices are completely determined by this R-matrix. We show the reason why in the superintegrable case the eigenspace is degenerate, but not in the general case. We then show that the eigenspaces of special CSOS models descending from the chiral Potts model are also degenerate. The existence of an L({{sl}}2) quantum loop algebra (or subalgebra) in these models is established by showing that the Serre relations hold for the generators. The highest weight polynomial (or the Drinfeld polynomial) of the representation is obtained by using the method of Baxter for the superintegrable case. As a byproduct, the eigenvalues of all such CSOS models are given explicitly.
Sums of random matrices and the Potts model on random planar maps
NASA Astrophysics Data System (ADS)
Atkin, Max R.; Niedner, Benjamin; Wheater, John F.
2016-05-01
We compute the partition function of the q-states Potts model on a random planar lattice with p≤slant q allowed, equally weighted colours on a connected boundary. To this end, we employ its matrix model representation in the planar limit, generalising a result by Voiculescu for the addition of random matrices to a situation beyond free probability theory. We show that the partition functions with p and q - p colours on the boundary are related algebraically. Finally, we investigate the phase diagram of the model when 0≤slant q≤slant 4 and comment on the conformal field theory description of the critical points.
Shaken, but not stirred—Potts model coupled to quantum gravity
NASA Astrophysics Data System (ADS)
Ambjørn, J. A.; Anagnostopoulos, K. N.; Loll, R.; Pushkina, I.
2009-01-01
We investigate the critical behaviour of both matter and geometry of the three-state Potts model coupled to two-dimensional Lorentzian quantum gravity in the framework of causal dynamical triangulations. Contrary to what general arguments on the effects of disorder suggest, we find strong numerical evidence that the critical exponents of the matter are not changed under the influence of quantum fluctuations in the geometry, compared to their values on fixed, regular lattices. This lends further support to previous findings that quantum gravity models based on causal dynamical triangulations are in many ways better behaved than their Euclidean counterparts.
The early history of the integrable chiral Potts model and the odd-even problem
NASA Astrophysics Data System (ADS)
Perk, Jacques H. H.
2016-04-01
In the first part of this paper I shall discuss the round-about way of how the integrable chiral Potts model was discovered about 30 years ago. As there should be more higher-genus models to be discovered, this might be of interest. In the second part I shall discuss some quantum group aspects, especially issues of odd versus even N related to the Serre relations conjecture in our quantum loop subalgebra paper of 5 years ago and how we can make good use of coproducts, also borrowing ideas of Drinfeld, Jimbo, Deguchi, Fabricius, McCoy and Nishino.
Potts model simulation of grain size distributions during final stage sintering
Zeng, P.; Tikare, V.
1998-09-01
The Potts Monte Carlo model was used to simulate microstructural evolution and characterize grain size distribution during the final stages of sintering. Simultaneous grain growth, pore migration and pore shrinkage were simulated in a system with an initial porosity of 10% with varying ratios of grain boundary mobility to pore shrinkage rates. This investigation shows that the presence of pores changes the grain size distribution and the topological characteristics due to pinning of grains by pores. As pores shrink away, their pinning effect decreases. Once pore shrinkage is complete, normal grain growth is achieved.
Brittle damage models in DYNA2D
Faux, D.R.
1997-09-01
DYNA2D is an explicit Lagrangian finite element code used to model dynamic events where stress wave interactions influence the overall response of the system. DYNA2D is often used to model penetration problems involving ductile-to-ductile impacts; however, with the advent of the use of ceramics in the armor-anti-armor community and the need to model damage to laser optics components, good brittle damage models are now needed in DYNA2D. This report will detail the implementation of four brittle damage models in DYNA2D, three scalar damage models and one tensor damage model. These new brittle damage models are then used to predict experimental results from three distinctly different glass damage problems.
Dynamics of Cell Shape and Forces on Micropatterned Substrates Predicted by a Cellular Potts Model
Albert, Philipp J.; Schwarz, Ulrich S.
2014-01-01
Micropatterned substrates are often used to standardize cell experiments and to quantitatively study the relation between cell shape and function. Moreover, they are increasingly used in combination with traction force microscopy on soft elastic substrates. To predict the dynamics and steady states of cell shape and forces without any a priori knowledge of how the cell will spread on a given micropattern, here we extend earlier formulations of the two-dimensional cellular Potts model. The third dimension is treated as an area reservoir for spreading. To account for local contour reinforcement by peripheral bundles, we augment the cellular Potts model by elements of the tension-elasticity model. We first parameterize our model and show that it accounts for momentum conservation. We then demonstrate that it is in good agreement with experimental data for shape, spreading dynamics, and traction force patterns of cells on micropatterned substrates. We finally predict shapes and forces for micropatterns that have not yet been experimentally studied. PMID:24896113
NASA Astrophysics Data System (ADS)
Hu, Zhan-Ning
In this letter, the connection is found between the "star-square" relation in the Baxter-Bazhanov model and the "star-triangle" relation in the chiral Potts model, which means that the tetrahedron equation of the Baxter-Bazhanov model is a consequence of the latter. The four additional constraints in the tetrahedron equation given by Kashaev et al. hold naturally in respect to the spherical trigonometry parametrizations.
Structural propensities of kinase family proteins from a Potts model of residue co-variation.
Haldane, Allan; Flynn, William F; He, Peng; Vijayan, R S K; Levy, Ronald M
2016-08-01
Understanding the conformational propensities of proteins is key to solving many problems in structural biology and biophysics. The co-variation of pairs of mutations contained in multiple sequence alignments of protein families can be used to build a Potts Hamiltonian model of the sequence patterns which accurately predicts structural contacts. This observation paves the way to develop deeper connections between evolutionary fitness landscapes of entire protein families and the corresponding free energy landscapes which determine the conformational propensities of individual proteins. Using statistical energies determined from the Potts model and an alignment of 2896 PDB structures, we predict the propensity for particular kinase family proteins to assume a "DFG-out" conformation implicated in the susceptibility of some kinases to type-II inhibitors, and validate the predictions by comparison with the observed structural propensities of the corresponding proteins and experimental binding affinity data. We decompose the statistical energies to investigate which interactions contribute the most to the conformational preference for particular sequences and the corresponding proteins. We find that interactions involving the activation loop and the C-helix and HRD motif are primarily responsible for stabilizing the DFG-in state. This work illustrates how structural free energy landscapes and fitness landscapes of proteins can be used in an integrated way, and in the context of kinase family proteins, can potentially impact therapeutic design strategies. PMID:27241634
Ginsparg, P.
1991-01-01
These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.
Ginsparg, P.
1991-12-31
These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.
Multi-Scale Modeling in Morphogenesis: A Critical Analysis of the Cellular Potts Model
Voss-Böhme, Anja
2012-01-01
Cellular Potts models (CPMs) are used as a modeling framework to elucidate mechanisms of biological development. They allow a spatial resolution below the cellular scale and are applied particularly when problems are studied where multiple spatial and temporal scales are involved. Despite the increasing usage of CPMs in theoretical biology, this model class has received little attention from mathematical theory. To narrow this gap, the CPMs are subjected to a theoretical study here. It is asked to which extent the updating rules establish an appropriate dynamical model of intercellular interactions and what the principal behavior at different time scales characterizes. It is shown that the longtime behavior of a CPM is degenerate in the sense that the cells consecutively die out, independent of the specific interdependence structure that characterizes the model. While CPMs are naturally defined on finite, spatially bounded lattices, possible extensions to spatially unbounded systems are explored to assess to which extent spatio-temporal limit procedures can be applied to describe the emergent behavior at the tissue scale. To elucidate the mechanistic structure of CPMs, the model class is integrated into a general multiscale framework. It is shown that the central role of the surface fluctuations, which subsume several cellular and intercellular factors, entails substantial limitations for a CPM's exploitation both as a mechanistic and as a phenomenological model. PMID:22984409
A study of perfect wetting for Potts and Blume-Capel models with correlation inequalities
De Coninck, J.; Messager, A.; Miracle-Sole, S.; Ruiz, J. )
1988-07-01
The so-called perfect wetting phenomenon is studied for the q-state, d {>=} 2 Potts model. Using a new correlation inequality, a general inequality is established for the surface tension between ordered phases ({sigma}{sup a,b}) and the surface tension between an ordered and the disordered phases ({sigma}{sup a,f}) for any even value of q. This result implies in particular {sigma}{sub {beta}{sub t}}{sup a,b} {>=} {sigma}{sub {beta}{sub t}}{sup a,f} + {sigma}{sub {beta}{sub t}}{sup b,f} > 0 at the transition point {beta}{sub t} where the previous phases coexist for q large. This inequality is connected to perfect wetting at the transition point using thermodynamic considerations. The same kinds of results are derived for the Blume-Capel model.
High-precision percolation thresholds and Potts-model critical manifolds from graph polynomials
NASA Astrophysics Data System (ADS)
>Jesper Lykke Jacobsen,
2014-04-01
The critical curves of the q-state Potts model can be determined exactly for regular two-dimensional lattices G that are of the three-terminal type. This comprises the square, triangular, hexagonal and bow-tie lattices. Jacobsen and Scullard have defined a graph polynomial PB(q, v) that gives access to the critical manifold for general lattices. It depends on a finite repeating part of the lattice, called the basis B, and its real roots in the temperature variable v = eK - 1 provide increasingly accurate approximations to the critical manifolds upon increasing the size of B. Using transfer matrix techniques, these authors computed PB(q, v) for large bases (up to 243 edges), obtaining determinations of the ferromagnetic critical point vc > 0 for the (4, 82), kagome, and (3, 122) lattices to a precision (of the order 10-8) slightly superior to that of the best available Monte Carlo simulations. In this paper we describe a more efficient transfer matrix approach to the computation of PB(q, v) that relies on a formulation within the periodic Temperley-Lieb algebra. This makes possible computations for substantially larger bases (up to 882 edges), and the precision on vc is hence taken to the range 10-13. We further show that a large variety of regular lattices can be cast in a form suitable for this approach. This includes all Archimedean lattices, their duals and their medials. For all these lattices we tabulate high-precision estimates of the bond percolation thresholds pc and Potts critical points vc. We also trace and discuss the full Potts critical manifold in the (q, v) plane, paying special attention to the antiferromagnetic region v < 0. Finally, we adapt the technique to site percolation as well, and compute the polynomials PB(p) for certain Archimedean and dual lattices (those having only cubic and quartic vertices), using very large bases (up to 243 vertices). This produces the site percolation thresholds pc to a precision of the order of 10-9.
Spanning Forests and the q-State Potts Model in the Limit q →0
NASA Astrophysics Data System (ADS)
Jacobsen, Jesper Lykke; Salas, Jesús; Sokal, Alan D.
2005-06-01
We study the q-state Potts model with nearest-neighbor coupling v=eβJ-1 in the limit q,v → 0 with the ratio w = v/q held fixed. Combinatorially, this limit gives rise to the generating polynomial of spanning forests; physically, it provides information about the Potts-model phase diagram in the neighborhood of (q,v) = (0,0). We have studied this model on the square and triangular lattices, using a transfer-matrix approach at both real and complex values of w. For both lattices, we have computed the symbolic transfer matrices for cylindrical strips of widths 2≤ L ≤ 10, as well as the limiting curves B of partition-function zeros in the complex w-plane. For real w, we find two distinct phases separated by a transition point w= w 0, where w0 =-1/4 (resp. w0=-0.1753 ± 0.0002) for the square (resp. triangular) lattice. For w>w0 we find a non-critical disordered phase that is compatible with the predicted asymptotic freedom as w → +∞. For w
FAST TRACK COMMUNICATION Critical exponents of domain walls in the two-dimensional Potts model
NASA Astrophysics Data System (ADS)
Dubail, Jérôme; Lykke Jacobsen, Jesper; Saleur, Hubert
2010-12-01
We address the geometrical critical behavior of the two-dimensional Q-state Potts model in terms of the spin clusters (i.e. connected domains where the spin takes a constant value). These clusters are different from the usual Fortuin-Kasteleyn clusters, and are separated by domain walls that can cross and branch. We develop a transfer matrix technique enabling the formulation and numerical study of spin clusters even when Q is not an integer. We further identify geometrically the crossing events which give rise to conformal correlation functions. This leads to an infinite series of fundamental critical exponents h_{\\ell _1-\\ell _2,2\\ell _1}, valid for 0 <= Q <= 4, that describe the insertion of ell1 thin and ell2 thick domain walls.
A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis
Chen, Nan; Glazier, James A.; Izaguirre, Jesús A.; Alber, Mark S.
2007-01-01
The Cellular Potts Model (CPM) has been used in a wide variety of biological simulations. However, most current CPM implementations use a sequential modified Metropolis algorithm which restricts the size of simulations. In this paper we present a parallel CPM algorithm for simulations of morphogenesis, which includes cell–cell adhesion, a cell volume constraint, and cell haptotaxis. The algorithm uses appropriate data structures and checkerboard subgrids for parallelization. Communication and updating algorithms synchronize properties of cells simulated on different processor nodes. Tests show that the parallel algorithm has good scalability, permitting large-scale simulations of cell morphogenesis (107 or more cells) and broadening the scope of CPM applications. The new algorithm satisfies the balance condition, which is sufficient for convergence of the underlying Markov chain. PMID:18084624
A Cellular Potts Model of single cell migration in presence of durotaxis.
Allena, R; Scianna, M; Preziosi, L
2016-05-01
Cell migration is a fundamental biological phenomenon during which cells sense their surroundings and respond to different types of signals. In presence of durotaxis, cells preferentially crawl from soft to stiff substrates by reorganizing their cytoskeleton from an isotropic to an anisotropic distribution of actin filaments. In the present paper, we propose a Cellular Potts Model to simulate single cell migration over flat substrates with variable stiffness. We have tested five configurations: (i) a substrate including a soft and a stiff region, (ii) a soft substrate including two parallel stiff stripes, (iii) a substrate made of successive stripes with increasing stiffness to create a gradient and (iv) a stiff substrate with four embedded soft squares. For each simulation, we have evaluated the morphology of the cell, the distance covered, the spreading area and the migration speed. We have then compared the numerical results to specific experimental observations showing a consistent agreement. PMID:26968932
Transfer matrix computation of critical polynomials for two-dimensional Potts models
Jacobsen, Jesper Lykke; Scullard, Christian R.
2013-02-04
We showed, In our previous work, that critical manifolds of the q-state Potts model can be studied by means of a graph polynomial PB(q, v), henceforth referred to as the critical polynomial. This polynomial may be defined on any periodic two-dimensional lattice. It depends on a finite subgraph B, called the basis, and the manner in which B is tiled to construct the lattice. The real roots v = eK — 1 of PB(q, v) either give the exact critical points for the lattice, or provide approximations that, in principle, can be made arbitrarily accurate by increasing the size ofmore » B in an appropriate way. In earlier work, PB(q, v) was defined by a contraction-deletion identity, similar to that satisfied by the Tutte polynomial. Here, we give a probabilistic definition of PB(q, v), which facilitates its computation, using the transfer matrix, on much larger B than was previously possible.We present results for the critical polynomial on the (4, 82), kagome, and (3, 122) lattices for bases of up to respectively 96, 162, and 243 edges, compared to the limit of 36 edges with contraction-deletion. We discuss in detail the role of the symmetries and the embedding of B. The critical temperatures vc obtained for ferromagnetic (v > 0) Potts models are at least as precise as the best available results from Monte Carlo simulations or series expansions. For instance, with q = 3 we obtain vc(4, 82) = 3.742 489 (4), vc(kagome) = 1.876 459 7 (2), and vc(3, 122) = 5.033 078 49 (4), the precision being comparable or superior to the best simulation results. More generally, we trace the critical manifolds in the real (q, v) plane and discuss the intricate structure of the phase diagram in the antiferromagnetic (v < 0) region.« less
Šimėnas, Mantas; Balčiūnas, Sergejus; Ma Combining Cedilla Czka, Mirosław; Banys, Jūras; Tornau, Evaldas E
2016-07-21
We propose a combined experimental and numerical study to describe an order-disorder structural phase transition in perovskite-based [(CH3)2NH2][M(HCOO)3] (M = Zn(2+), Mn(2+), Fe(2+), Co(2+) and Ni(2+)) dense metal-organic frameworks (MOFs). The three-fold degenerate orientation of the molecular (CH3)2NH2(+) (DMA(+)) cation implies a selection of the statistical three-state model of the Potts type. It is constructed on a simple cubic lattice where each lattice point can be occupied by a DMA(+) cation in one of the available states. In our model the main interaction is the nearest-neighbor Potts-type interaction, which effectively accounts for the H-bonding between DMA(+) cations and M(HCOO)3(-) cages. The model is modified by accounting for the dipolar interactions which are evaluated for the real monoclinic lattice using density functional theory. We employ the Monte Carlo method to numerically study the model. The calculations are supplemented with the experimental measurements of electric polarization. The obtained results indicate that the three-state Potts model correctly describes the phase transition order in these MOFs, while dipolar interactions are necessary to obtain better agreement with the experimental polarization. We show that in our model with substantial dipolar interactions the ground state changes from uniform to the layers with alternating polarization directions. PMID:27341447
Dynamic metastability in the two-dimensional Potts ferromagnet
NASA Astrophysics Data System (ADS)
Ibáñez Berganza, Miguel; Petri, Alberto; Coletti, Pietro
2014-05-01
We investigate the nonequilibrium dynamics of the two-dimensional (2D) Potts model on the square lattice after a quench below the discontinuous transition point. By means of numerical simulations of systems with q =12, 24, and 48, we observe the onset of a stationary regime below the temperature-driven transition, in a temperature interval decreasing with the system size and increasing with q. These results obtained dynamically agree with those obtained from the analytical continuation of the free energy [J. L. Meunier and A. Morel, Eur. Phys. J. B 13, 341 (2000), 10.1007/s100510050040], from which metastability in the 2D Potts model results to be a finite-size effect.
Chair, Noureddine
2014-02-15
We have recently developed methods for obtaining exact two-point resistance of the complete graph minus N edges. We use these methods to obtain closed formulas of certain trigonometrical sums that arise in connection with one-dimensional lattice, in proving Scott’s conjecture on permanent of Cauchy matrix, and in the perturbative chiral Potts model. The generalized trigonometrical sums of the chiral Potts model are shown to satisfy recursion formulas that are transparent and direct, and differ from those of Gervois and Mehta. By making a change of variables in these recursion formulas, the dimension of the space of conformal blocks of SU(2) and SO(3) WZW models may be computed recursively. Our methods are then extended to compute the corner-to-corner resistance, and the Kirchhoff index of the first non-trivial two-dimensional resistor network, 2×N. Finally, we obtain new closed formulas for variant of trigonometrical sums, some of which appear in connection with number theory. -- Highlights: • Alternative derivation of certain trigonometrical sums of the chiral Potts model are given. • Generalization of these trigonometrical sums satisfy recursion formulas. • The dimension of the space of conformal blocks may be computed from these recursions. • Exact corner-to-corner resistance, the Kirchhoff index of 2×N are given.
Fraction of uninfected walkers in the one-dimensional Potts model
NASA Astrophysics Data System (ADS)
O'Donoghue, S. J.; Bray, A. J.
2002-05-01
The dynamics of the one-dimensional q-state Potts model, in the zero-temperature limit, can be formulated through the motion of random walkers which either annihilate (A+A-->∅) or coalesce (A+A-->A) with a q-dependent probability. We consider all of the walkers in this model to be mutually infectious. Whenever two walkers meet, they experience mutual contamination. Walkers which avoid an encounter with another random walker up to time t remain uninfected. The fraction of uninfected walkers is known to obey a power-law decay U(t)~t-φ(q), with a nontrivial exponent φ(q) [C. Monthus, Phys. Rev. E 54, 4844 (1996); S. N. Majumdar and S. J. Cornell, ibid. 57, 3757 (1998)]. We probe the numerical values of φ(q) to a higher degree of accuracy than previous simulations and relate the exponent φ(q) to the persistence exponent θ(q) [B. Derrida, V. Hakim, and V. Pasquier, Phys. Rev. Lett. 75, 751 (1995)], through the relation φ(q)=γ(q)θ(q) where γ is an exponent introduced in [S. J. O'Donoghue and A. J. Bray, preceding paper, Phys. Rev. E 65, XXXX (2002)]. Our study is extended to include the coupled diffusion-limited reaction A+A-->B, B+B-->A in one dimension with equal initial densities of A and B particles. We find that the density of walkers decays in this model as ρ(t)~t-1/2. The fraction of sites unvisited by either an A or a B particle is found to obey a power law, P(t)~t-θ with θ~=1.33. We discuss these exponents within the context of the q-state Potts model and present numerical evidence that the fraction of walkers which remain uninfected decays as U(t)~t-φ, where φ~=1.13 when infection occurs between like particles only, and φ~=1.93 when we also include cross-species contamination. We find that the relation between φ and θ in this model can also be characterized by an exponent γ, where similarly, φ=γθ.
Nature of phase transitions in Axelrod-like coupled Potts models in two dimensions
NASA Astrophysics Data System (ADS)
Gandica, Yerali; Chiacchiera, Silvia
2016-03-01
We study F coupled q -state Potts models in a two-dimensional square lattice. The interaction between the different layers is attractive to favor a simultaneous alignment in all of them, and its strength is fixed. The nature of the phase transition for zero field is numerically determined for F =2 ,3 . Using the Lee-Kosterlitz method, we find that it is continuous for F =2 and q =2 , whereas it is abrupt for higher values of q and/or F . When a continuous or a weakly first-order phase transition takes place, we also analyze the properties of the geometrical clusters. This allows us to determine the fractal dimension D of the incipient infinite cluster and to examine the finite-size scaling of the cluster number density via data collapse. A mean-field approximation of the model, from which some general trends can be determined, is presented too. Finally, since this lattice model has been recently considered as a thermodynamic counterpart of the Axelrod model of social dynamics, we discuss our results in connection with this one.
Cluster-size distribution and the magnetic property of a Potts model
NASA Astrophysics Data System (ADS)
Hu, Chin-Kun
1986-11-01
Based on the connection between a q-state Potts model (QPM) and a q-state bond-correlated percolation model (QBCPM), we propose that in the calculation of the free energy and a physical quantity, e.g., the magnetic susceptibility, we need only to retain the terms of the most probable cluster-size distribution (MPCSD) defined in the text. For the one-dimensional model, the MPCSD may be calculated exactly. The free energy and the magnetic susceptibility determined by such MPCSD are the same as those calculated exactly by the transfer-matrix method. For the QPM on the lattice with dimensions d>=2, the above assumption about the MPCSD implies that the magnetic susceptibility of the QPM is proportional to the mean cluster sizes of the QBCPM for both T>Tc and T
Transfer matrix computation of critical polynomials for two-dimensional Potts models
Jacobsen, Jesper Lykke; Scullard, Christian R.
2013-02-04
We showed, In our previous work, that critical manifolds of the q-state Potts model can be studied by means of a graph polynomial P_{B}(q, v), henceforth referred to as the critical polynomial. This polynomial may be defined on any periodic two-dimensional lattice. It depends on a finite subgraph B, called the basis, and the manner in which B is tiled to construct the lattice. The real roots v = e^{K} — 1 of P_{B}(q, v) either give the exact critical points for the lattice, or provide approximations that, in principle, can be made arbitrarily accurate by increasing the size of B in an appropriate way. In earlier work, P_{B}(q, v) was defined by a contraction-deletion identity, similar to that satisfied by the Tutte polynomial. Here, we give a probabilistic definition of P_{B}(q, v), which facilitates its computation, using the transfer matrix, on much larger B than was previously possible.We present results for the critical polynomial on the (4, 8^{2}), kagome, and (3, 12^{2}) lattices for bases of up to respectively 96, 162, and 243 edges, compared to the limit of 36 edges with contraction-deletion. We discuss in detail the role of the symmetries and the embedding of B. The critical temperatures v_{c }obtained for ferromagnetic (v > 0) Potts models are at least as precise as the best available results from Monte Carlo simulations or series expansions. For instance, with q = 3 we obtain v_{c}(4, 8^{2}) = 3.742 489 (4), v_{c}(kagome) = 1.876 459 7 (2), and v_{c}(3, 12^{2}) = 5.033 078 49 (4), the precision being comparable or superior to the best simulation results. More generally, we trace the critical manifolds in the real (q, v) plane and discuss the intricate structure of the phase diagram in the antiferromagnetic (v < 0) region.
Reconstruction of a Real World Social Network using the Potts Model and Loopy Belief Propagation
Bisconti, Cristian; Corallo, Angelo; Fortunato, Laura; Gentile, Antonio A.; Massafra, Andrea; Pellè, Piergiuseppe
2015-01-01
The scope of this paper is to test the adoption of a statistical model derived from Condensed Matter Physics, for the reconstruction of the structure of a social network. The inverse Potts model, traditionally applied to recursive observations of quantum states in an ensemble of particles, is here addressed to observations of the members' states in an organization and their (anti)correlations, thus inferring interactions as links among the members. Adopting proper (Bethe) approximations, such an inverse problem is showed to be tractable. Within an operational framework, this network-reconstruction method is tested for a small real-world social network, the Italian parliament. In this study case, it is easy to track statuses of the parliament members, using (co)sponsorships of law proposals as the initial dataset. In previous studies of similar activity-based networks, the graph structure was inferred directly from activity co-occurrences: here we compare our statistical reconstruction with such standard methods, outlining discrepancies and advantages. PMID:26617539
Improved contact prediction in proteins: using pseudolikelihoods to infer Potts models.
Ekeberg, Magnus; Lövkvist, Cecilia; Lan, Yueheng; Weigt, Martin; Aurell, Erik
2013-01-01
Spatially proximate amino acids in a protein tend to coevolve. A protein's three-dimensional (3D) structure hence leaves an echo of correlations in the evolutionary record. Reverse engineering 3D structures from such correlations is an open problem in structural biology, pursued with increasing vigor as more and more protein sequences continue to fill the data banks. Within this task lies a statistical inference problem, rooted in the following: correlation between two sites in a protein sequence can arise from firsthand interaction but can also be network-propagated via intermediate sites; observed correlation is not enough to guarantee proximity. To separate direct from indirect interactions is an instance of the general problem of inverse statistical mechanics, where the task is to learn model parameters (fields, couplings) from observables (magnetizations, correlations, samples) in large systems. In the context of protein sequences, the approach has been referred to as direct-coupling analysis. Here we show that the pseudolikelihood method, applied to 21-state Potts models describing the statistical properties of families of evolutionarily related proteins, significantly outperforms existing approaches to the direct-coupling analysis, the latter being based on standard mean-field techniques. This improved performance also relies on a modified score for the coupling strength. The results are verified using known crystal structures of specific sequence instances of various protein families. Code implementing the new method can be found at http://plmdca.csc.kth.se/. PMID:23410359
Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
NASA Astrophysics Data System (ADS)
Ekeberg, Magnus; Lövkvist, Cecilia; Lan, Yueheng; Weigt, Martin; Aurell, Erik
2013-01-01
Spatially proximate amino acids in a protein tend to coevolve. A protein's three-dimensional (3D) structure hence leaves an echo of correlations in the evolutionary record. Reverse engineering 3D structures from such correlations is an open problem in structural biology, pursued with increasing vigor as more and more protein sequences continue to fill the data banks. Within this task lies a statistical inference problem, rooted in the following: correlation between two sites in a protein sequence can arise from firsthand interaction but can also be network-propagated via intermediate sites; observed correlation is not enough to guarantee proximity. To separate direct from indirect interactions is an instance of the general problem of inverse statistical mechanics, where the task is to learn model parameters (fields, couplings) from observables (magnetizations, correlations, samples) in large systems. In the context of protein sequences, the approach has been referred to as direct-coupling analysis. Here we show that the pseudolikelihood method, applied to 21-state Potts models describing the statistical properties of families of evolutionarily related proteins, significantly outperforms existing approaches to the direct-coupling analysis, the latter being based on standard mean-field techniques. This improved performance also relies on a modified score for the coupling strength. The results are verified using known crystal structures of specific sequence instances of various protein families. Code implementing the new method can be found at http://plmdca.csc.kth.se/.
Cellular Potts Modeling of Tumor Growth, Tumor Invasion, and Tumor Evolution
Szabó, András; Merks, Roeland M. H.
2013-01-01
Despite a growing wealth of available molecular data, the growth of tumors, invasion of tumors into healthy tissue, and response of tumors to therapies are still poorly understood. Although genetic mutations are in general the first step in the development of a cancer, for the mutated cell to persist in a tissue, it must compete against the other, healthy or diseased cells, for example by becoming more motile, adhesive, or multiplying faster. Thus, the cellular phenotype determines the success of a cancer cell in competition with its neighbors, irrespective of the genetic mutations or physiological alterations that gave rise to the altered phenotype. What phenotypes can make a cell “successful” in an environment of healthy and cancerous cells, and how? A widely used tool for getting more insight into that question is cell-based modeling. Cell-based models constitute a class of computational, agent-based models that mimic biophysical and molecular interactions between cells. One of the most widely used cell-based modeling formalisms is the cellular Potts model (CPM), a lattice-based, multi particle cell-based modeling approach. The CPM has become a popular and accessible method for modeling mechanisms of multicellular processes including cell sorting, gastrulation, or angiogenesis. The CPM accounts for biophysical cellular properties, including cell proliferation, cell motility, and cell adhesion, which play a key role in cancer. Multiscale models are constructed by extending the agents with intracellular processes including metabolism, growth, and signaling. Here we review the use of the CPM for modeling tumor growth, tumor invasion, and tumor progression. We argue that the accessibility and flexibility of the CPM, and its accurate, yet coarse-grained and computationally efficient representation of cell and tissue biophysics, make the CPM the method of choice for modeling cellular processes in tumor development. PMID:23596570
Competitive heterogeneous nucleation onto a microscopic impurity in a Potts model
NASA Astrophysics Data System (ADS)
Asuquo, Cletus C.; McArthur, Danielle; Bowles, Richard K.
2016-08-01
Many metastable systems can nucleate to multiple competing stable or intermediate metastable states. In this work, a Potts model, subject to external fields, is used to study the competitive nucleation of two phases attempting to grow on a microscopic impurity. Monte Carlo simulations are used to calculate the free energy surfaces for the system under different conditions, where the relative stability of the phases is adjusted by changing the interaction parameters, and the nucleation rates obtained using multicomponent transition state theory (TST) are compared with the rates measured using the survival probability method. We find that the two methods predict similar nucleation rates when the free energy barrier used in the transition state theory is defined as the work required to form a critical embryo from the metastable phase. An analysis of the free energy surfaces also reveals that the competition between the nucleating phases leads to an effective drying of the impurity which slows down the nucleation rate compared to the single phase case.
Potts model partition functions for self-dual families of strip graphs
NASA Astrophysics Data System (ADS)
Chang, Shu-Chiuan; Shrock, Robert
2001-12-01
We consider the q-state Potts model on families of self-dual strip graphs GD of the square lattice of width Ly and arbitrarily great length Lx, with periodic longitudinal boundary conditions. The general partition function Z and the T=0 antiferromagnetic special case P (chromatic polynomial) have the respective forms ∑ j=1 NF, Ly, λcF, Ly, j( λF, Ly, j) Lx, with F= Z, P. For arbitrary Ly, we determine (i) the general coefficient cF, Ly, j in terms of Chebyshev polynomials, (ii) the number nF( Ly, d) of terms with each type of coefficient, and (iii) the total number of terms NF, Ly, λ. We point out interesting connections between the nZ( Ly, d) and Temperley-Lieb algebras, and between the NF, Ly, λ and enumerations of directed lattice animals. Exact calculations of P are presented for 2⩽ Ly⩽4. In the limit of infinite length, we calculate the ground state degeneracy per site (exponent of the ground state entropy), W( q). Generalizing q from Z+ to C, we determine the continuous locus B in the complex q plane where W( q) is singular. We find the interesting result that for all Ly values considered, the maximal point at which B crosses the real q-axis, denoted qc, is the same, and is equal to the value for the infinite square lattice, qc=3. This is the first family of strip graphs of which we are aware that exhibits this type of universality of qc.
Jacobsen, J L; Saleur, H
2008-02-29
We determine exactly the probability distribution of the number N_(c) of valence bonds connecting a subsystem of length L>1 to the rest of the system in the ground state of the XXX antiferromagnetic spin chain. This provides, in particular, the asymptotic behavior of the valence-bond entanglement entropy S_(VB)=N_(c)ln2=4ln2/pi(2)lnL disproving a recent conjecture that this should be related with the von Neumann entropy, and thus equal to 1/3lnL. Our results generalize to the Q-state Potts model. PMID:18352661
NASA Astrophysics Data System (ADS)
Murtazaev, A. K.; Babaev, A. B.; Ataeva, G. Ya.
2015-07-01
The effect of quenched-in nonmagnetic impurities on phase transitions in a two-dimensional diluted antiferromagnetic three-vertex Potts model on a triangular lattice has been investigated using the Monte Carlo method. The systems with linear dimensions L × L = N and L = 9-144 have been considered. It has been shown using the fourth-order Binder cumulant method that the introduction of a quenched-in disorder into a spin system described by the two-dimensional antiferromagnetic Potts model leads to a change from the first-order phase transition to the second-order phase transition.
NASA Astrophysics Data System (ADS)
Babaev, A. B.; Magomedov, M. A.; Murtazaev, A. K.; Kassan-Ogly, F. A.; Proshkin, A. I.
2016-02-01
Phase transitions (PTs) and frustrations in two-dimensional structures described by a three-vertex antiferromagnetic Potts model on a triangular lattice are investigated by the Monte Carlo method with regard to nearest and next-nearest neighbors with interaction constants J 1 and J 2, respectively. PTs in these models are analyzed for the ratio r = J 2/ J 1 of next-nearest to nearest exchange interaction constants in the interval | r| = 0-1.0. On the basis of the analysis of the low-temperature entropy, the density of states function of the system, and the fourth-order Binder cumulants, it is shown that a Potts model with interaction constants J 1 < 0 and J 2 < 0 exhibits a first-order PT in the range of 0 ⩽ r < 0.2, whereas, in the interval 0.2 ⩽ r ⩽ 1.0, frustrations arise in the system. At the same time, for J 1 > 0 and J 2 < 0, frustrations arise in the range 0.5 < | r| < 1.0, while, in the interval 0 ⩽ | r| ⩽ 1/3, the model exhibits a second-order PT.
NASA Astrophysics Data System (ADS)
Barton, J. P.; Cocco, S.; De Leonardis, E.; Monasson, R.
2014-07-01
The mean-field (MF) approximation offers a simple, fast way to infer direct interactions between elements in a network of correlated variables, a common, computationally challenging problem with practical applications in fields ranging from physics and biology to the social sciences. However, MF methods achieve their best performance with strong regularization, well beyond Bayesian expectations, an empirical fact that is poorly understood. In this work, we study the influence of pseudocount and L2-norm regularization schemes on the quality of inferred Ising or Potts interaction networks from correlation data within the MF approximation. We argue, based on the analysis of small systems, that the optimal value of the regularization strength remains finite even if the sampling noise tends to zero, in order to correct for systematic biases introduced by the MF approximation. Our claim is corroborated by extensive numerical studies of diverse model systems and by the analytical study of the m-component spin model for large but finite m. Additionally, we find that pseudocount regularization is robust against sampling noise and often outperforms L2-norm regularization, particularly when the underlying network of interactions is strongly heterogeneous. Much better performances are generally obtained for the Ising model than for the Potts model, for which only couplings incoming onto medium-frequency symbols are reliably inferred.
WFR-2D: an analytical model for PWAS-generated 2D ultrasonic guided wave propagation
NASA Astrophysics Data System (ADS)
Shen, Yanfeng; Giurgiutiu, Victor
2014-03-01
This paper presents WaveFormRevealer 2-D (WFR-2D), an analytical predictive tool for the simulation of 2-D ultrasonic guided wave propagation and interaction with damage. The design of structural health monitoring (SHM) systems and self-aware smart structures requires the exploration of a wide range of parameters to achieve best detection and quantification of certain types of damage. Such need for parameter exploration on sensor dimension, location, guided wave characteristics (mode type, frequency, wavelength, etc.) can be best satisfied with analytical models which are fast and efficient. The analytical model was constructed based on the exact 2-D Lamb wave solution using Bessel and Hankel functions. Damage effects were inserted in the model by considering the damage as a secondary wave source with complex-valued directivity scattering coefficients containing both amplitude and phase information from wave-damage interaction. The analytical procedure was coded with MATLAB, and a predictive simulation tool called WaveFormRevealer 2-D was developed. The wave-damage interaction coefficients (WDICs) were extracted from harmonic analysis of local finite element model (FEM) with artificial non-reflective boundaries (NRB). The WFR-2D analytical simulation results were compared and verified with full scale multiphysics finite element models and experiments with scanning laser vibrometer. First, Lamb wave propagation in a pristine aluminum plate was simulated with WFR-2D, compared with finite element results, and verified by experiments. Then, an inhomogeneity was machined into the plate to represent damage. Analytical modeling was carried out, and verified by finite element simulation and experiments. This paper finishes with conclusions and suggestions for future work.
Quasi-Long-Range Order and Vortex Lattice in the Three-State Potts Model
NASA Astrophysics Data System (ADS)
Bhattacharya, Soumyadeep; Ray, Purusattam
2016-03-01
We show that the order-disorder phase transition in the three-state Potts ferromagnet on a square lattice is driven by a coupled proliferation of domain walls and vortices. Raising the vortex core energy above a threshold value decouples the proliferation and splits the transition into two. The phase between the two transitions exhibits an emergent U(1) symmetry and quasi-long-range order. Lowering the core energy below a threshold value also splits the order-disorder transition but the system forms a vortex lattice in the intermediate phase.
Ding, Chengxiang; Fu, Zhe; Guo, Wenan; Wu, F Y
2010-06-01
In the preceding paper, one of us (F. Y. Wu) considered the Potts model and bond and site percolation on two general classes of two-dimensional lattices, the triangular-type and kagome-type lattices, and obtained closed-form expressions for the critical frontier with applications to various lattice models. For the triangular-type lattices Wu's result is exact, and for the kagome-type lattices Wu's expression is under a homogeneity assumption. The purpose of the present paper is twofold: First, an essential step in Wu's analysis is the derivation of lattice-dependent constants A,B,C for various lattice models, a process which can be tedious. We present here a derivation of these constants for subnet networks using a computer algorithm. Second, by means of a finite-size scaling analysis based on numerical transfer matrix calculations, we deduce critical properties and critical thresholds of various models and assess the accuracy of the homogeneity assumption. Specifically, we analyze the q -state Potts model and the bond percolation on the 3-12 and kagome-type subnet lattices (n×n):(n×n) , n≤4 , for which the exact solution is not known. Our numerical determination of critical properties such as conformal anomaly and magnetic correlation length verifies that the universality principle holds. To calibrate the accuracy of the finite-size procedure, we apply the same numerical analysis to models for which the exact critical frontiers are known. The comparison of numerical and exact results shows that our numerical values are correct within errors of our finite-size analysis, which correspond to 7 or 8 significant digits. This in turn infers that the homogeneity assumption determines critical frontiers with an accuracy of 5 decimal places or higher. Finally, we also obtained the exact percolation thresholds for site percolation on kagome-type subnet lattices (1×1):(n×n) for 1≤n≤6 . PMID:20866382
Kauffman knot invariant from SO(N) or Sp(N) Chern-Simons theory and the Potts model
Astorino, Marco
2010-06-15
The expectation value of Wilson loop operators in three-dimensional SO(N) Chern-Simons gauge theory gives a known knot invariant: the Kauffman polynomial. Here this result is derived, at the first order, via a simple variational method. With the same procedure the skein relation for Sp(N) are also obtained. Jones polynomial arises as special cases: Sp(2), SO(-2), and SL(2,R). These results are confirmed and extended up to the second order, by means of perturbation theory, which moreover let us establish a duality relation between SO({+-}N) and Sp({+-}N) invariants. A correspondence between the first orders in perturbation theory of SO(-2), Sp(2) or SU(2) Chern-Simons quantum holonomy's traces and the partition function of the Q=4 Potts model is built.
NASA Astrophysics Data System (ADS)
Salas, Jesús; Sokal, Alan D.
2011-09-01
We study, using transfer-matrix methods, the partition-function zeros of the square-lattice q-state Potts antiferromagnet at zero temperature (= square-lattice chromatic polynomial) for the boundary conditions that are obtained from an m× n grid with free boundary conditions by adjoining one new vertex adjacent to all the sites in the leftmost column and a second new vertex adjacent to all the sites in the rightmost column. We provide numerical evidence that the partition-function zeros are becoming dense everywhere in the complex q-plane outside the limiting curve {B}_{infty}(sq) for this model with ordinary (e.g. free or cylindrical) boundary conditions. Despite this, the infinite-volume free energy is perfectly analytic in this region.
Homogenization models for 2-D grid structures
NASA Technical Reports Server (NTRS)
Banks, H. T.; Cioranescu, D.; Rebnord, D. A.
1992-01-01
In the past several years, we have pursued efforts related to the development of accurate models for the dynamics of flexible structures made of composite materials. Rather than viewing periodicity and sparseness as obstacles to be overcome, we exploit them to our advantage. We consider a variational problem on a domain that has large, periodically distributed holes. Using homogenization techniques we show that the solution to this problem is in some topology 'close' to the solution of a similar problem that holds on a much simpler domain. We study the behavior of the solution of the variational problem as the holes increase in number, but decrease in size in such a way that the total amount of material remains constant. The result is an equation that is in general more complex, but with a domain that is simply connected rather than perforated. We study the limit of the solution as the amount of material goes to zero. This second limit will, in most cases, retrieve much of the simplicity that was lost in the first limit without sacrificing the simplicity of the domain. Finally, we show that these results can be applied to the case of a vibrating Love-Kirchhoff plate with Kelvin-Voigt damping. We rely heavily on earlier results of (Du), (CS) for the static, undamped Love-Kirchhoff equation. Our efforts here result in a modification of those results to include both time dependence and Kelvin-Voigt damping.
NASA Astrophysics Data System (ADS)
Lach, Theodore M.
2003-10-01
The CBM (model) of the nucleus has resulted in the prediction of two new quarks, an "up" quark of mass 237.31 MeV/c2 and a "dn" quark of mass 42.392 MeV/c2. These two new predicted quarks helped to determine that the masses of the quarks and leptons are all related by a geometric progression relationship. The mass of each quark or lepton is just the "geometric mean" of two related elementary particles, either in the same generation or in the same family. This numerology predicts the following masses for the electron family: 0.511000 (electron), 7.74 (predicted), 117.3, 1778.4 (tau), 26950.1 MeV. The geometric ratio of this progression is 15.154 (e to the power e). The mass of the tau in this theory agrees very well with accepted values. This theory suggests that all the "dn like" quarks have a mass of just 10X multiples of 4.24 MeV (the mass of the "d" quark). The first 3 "up like" quark masses are 38, 237.31 and 1500 MeV. This theory also predicts a new heavy generation with a lepton mass of 27 GeV, a "dn like" quark of 42.4 GeV, and an "up like" quark of 65 GeV. Significant evidence already exists for the existence of these new quarks, and lepton. Ref. Masses of the Sub-Nuclear Particles, nucl-th/ 0008026, @ http://xxx.lanl.gov. Infinite Energy, Vol 5, issue 30.
NASA Astrophysics Data System (ADS)
Saburov, Mansoor; Khameini Ahmad, Mohd Ali
2015-12-01
Unlike the real number field, a set of p-adic Gibbs measures of p-adic lattice models of statistical mechanics has a complex structure in a sense that it is strongly tied up with a Diophantine problem over p-adic fields. Recently, all translation-invariant p-adic Gibbs measures of the p-adic Potts model on the Cayley tree of order two were described by means of roots of a certain quadratic equation over some domain of the p-adic field. In this paper, we consider the same problem on the Cayley tree of order three. In this case, we show that all translation-invariant p-adic Gibbs measures of the p-adic Potts model can be described in terms of roots of some cubic equation over Zpsetminus Zp^{*}. In own its turn, we also provide a solvability criterion of a general cubic equation over Zpsetminus Zp^{*} for p > 3.
NASA Astrophysics Data System (ADS)
Ding, Chengxiang; Fu, Zhe; Guo, Wenan; Wu, F. Y.
2010-06-01
In the preceding paper, one of us (F. Y. Wu) considered the Potts model and bond and site percolation on two general classes of two-dimensional lattices, the triangular-type and kagome-type lattices, and obtained closed-form expressions for the critical frontier with applications to various lattice models. For the triangular-type lattices Wu’s result is exact, and for the kagome-type lattices Wu’s expression is under a homogeneity assumption. The purpose of the present paper is twofold: First, an essential step in Wu’s analysis is the derivation of lattice-dependent constants A,B,C for various lattice models, a process which can be tedious. We present here a derivation of these constants for subnet networks using a computer algorithm. Second, by means of a finite-size scaling analysis based on numerical transfer matrix calculations, we deduce critical properties and critical thresholds of various models and assess the accuracy of the homogeneity assumption. Specifically, we analyze the q -state Potts model and the bond percolation on the 3-12 and kagome-type subnet lattices (n×n):(n×n) , n≤4 , for which the exact solution is not known. Our numerical determination of critical properties such as conformal anomaly and magnetic correlation length verifies that the universality principle holds. To calibrate the accuracy of the finite-size procedure, we apply the same numerical analysis to models for which the exact critical frontiers are known. The comparison of numerical and exact results shows that our numerical values are correct within errors of our finite-size analysis, which correspond to 7 or 8 significant digits. This in turn infers that the homogeneity assumption determines critical frontiers with an accuracy of 5 decimal places or higher. Finally, we also obtained the exact percolation thresholds for site percolation on kagome-type subnet lattices (1×1):(n×n) for 1≤n≤6 .
Technical Review of the UNET2D Hydraulic Model
Perkins, William A.; Richmond, Marshall C.
2009-05-18
The Kansas City District of the US Army Corps of Engineers is engaged in a broad range of river management projects that require knowledge of spatially-varied hydraulic conditions such as velocities and water surface elevations. This information is needed to design new structures, improve existing operations, and assess aquatic habitat. Two-dimensional (2D) depth-averaged numerical hydraulic models are a common tool that can be used to provide velocity and depth information. Kansas City District is currently using a specific 2D model, UNET2D, that has been developed to meet the needs of their river engineering applications. This report documents a tech- nical review of UNET2D.
Okamoto, Atsushi; Kuwatani, Tatsu; Omori, Toshiaki; Hukushima, Koji
2015-10-01
Metastable minerals commonly form during reactions between water and rock. The nucleation mechanism of polymorphic phases from solution are explored here using a two-dimensional Potts model. The model system is composed of a solvent and three polymorphic solid phases. The local state and position of the solid phase are updated by Metropolis dynamics. Below the critical temperature, a large cluster of the least stable solid phase initially forms in the solution before transitioning into more-stable phases following the Ostwald step rule. The free-energy landscape as a function of the modal abundance of each solid phase clearly reveals that before cluster formation, the least stable phase has an energetic advantage because of its low interfacial energy with the solution, and after cluster formation, phase transformation occurs along the valley of the free-energy landscape, which contains several minima for the regions of three phases. Our results indicate that the solid-solid and solid-liquid interfacial energy contribute to the formation of the complex free-energy landscape and nucleation pathways following the Ostwald step rule. PMID:26565191
NASA Astrophysics Data System (ADS)
Okamoto, Atsushi; Kuwatani, Tatsu; Omori, Toshiaki; Hukushima, Koji
2015-10-01
Metastable minerals commonly form during reactions between water and rock. The nucleation mechanism of polymorphic phases from solution are explored here using a two-dimensional Potts model. The model system is composed of a solvent and three polymorphic solid phases. The local state and position of the solid phase are updated by Metropolis dynamics. Below the critical temperature, a large cluster of the least stable solid phase initially forms in the solution before transitioning into more-stable phases following the Ostwald step rule. The free-energy landscape as a function of the modal abundance of each solid phase clearly reveals that before cluster formation, the least stable phase has an energetic advantage because of its low interfacial energy with the solution, and after cluster formation, phase transformation occurs along the valley of the free-energy landscape, which contains several minima for the regions of three phases. Our results indicate that the solid-solid and solid-liquid interfacial energy contribute to the formation of the complex free-energy landscape and nucleation pathways following the Ostwald step rule.
Praveen, E. Satyanarayana, S. V. M.
2014-04-24
Traditional definition of phase transition involves an infinitely large system in thermodynamic limit. Finite systems such as biological proteins exhibit cooperative behavior similar to phase transitions. We employ recently discovered analysis of inflection points of microcanonical entropy to estimate the transition temperature of the phase transition in q state Potts model on a finite two dimensional square lattice for q=3 (second order) and q=8 (first order). The difference of energy density of states (DOS) Δ ln g(E) = ln g(E+ ΔE) −ln g(E) exhibits a point of inflexion at a value corresponding to inverse transition temperature. This feature is common to systems exhibiting both first as well as second order transitions. While the difference of DOS registers a monotonic variation around the point of inflexion for systems exhibiting second order transition, it has an S-shape with a minimum and maximum around the point of inflexion for the case of first order transition.
NASA Astrophysics Data System (ADS)
Liberty, Joshua W.
This dissertation uses the hierarchical q-state Potts model at the critical point to develop a new random number generator test. We start with an exposition of renormalization group approach by means of which one can numerically exactly compute the free energy, specific heat and susceptibility of large, but finite lattices. We then show that generalization of these standard techniques allows one to also compute probability distributions related to the energy and the order parameter. The various computed quantities can be compared with Monte Carlo estimates of the same quantities. We demonstrate that the structure of the hierarchical lattices used allows one to perform the Monte Carlo calculations by direct sampling. This avoids the usual critical slowing down that plagues Monte Carlo calculations at the critical point. As is well known, critical behavior is highly susceptible to perturbations. We expect that flaws of the pseudo random number generator, such as correlations, will cause statistically significant discrepancies between the results of the simulations and the numerically exactly computed results. Details of the computer code generated for these tests are included.
An Intercomparison of 2-D Models Within a Common Framework
NASA Technical Reports Server (NTRS)
Weisenstein, Debra K.; Ko, Malcolm K. W.; Scott, Courtney J.; Jackman, Charles H.; Fleming, Eric L.; Considine, David B.; Kinnison, Douglas E.; Connell, Peter S.; Rotman, Douglas A.; Bhartia, P. K. (Technical Monitor)
2002-01-01
A model intercomparison among the Atmospheric and Environmental Research (AER) 2-D model, the Goddard Space Flight Center (GSFC) 2-D model, and the Lawrence Livermore National Laboratory 2-D model allows us to separate differences due to model transport from those due to the model's chemical formulation. This is accomplished by constructing two hybrid models incorporating the transport parameters of the GSFC and LLNL models within the AER model framework. By comparing the results from the native models (AER and e.g. GSFC) with those from the hybrid model (e.g. AER chemistry with GSFC transport), differences due to chemistry and transport can be identified. For the analysis, we examined an inert tracer whose emission pattern is based on emission from a High Speed Civil Transport (HSCT) fleet; distributions of trace species in the 2015 atmosphere; and the response of stratospheric ozone to an HSCT fleet. Differences in NO(y) in the upper stratosphere are found between models with identical transport, implying different model representations of atmospheric chemical processes. The response of O3 concentration to HSCT aircraft emissions differs in the models from both transport-dominated differences in the HSCT-induced perturbations of H2O and NO(y) as well as from differences in the model represent at ions of O3 chemical processes. The model formulations of cold polar processes are found to be the most significant factor in creating large differences in the calculated ozone perturbations
Statics and dynamics of the ten-state mean-field Potts glass model: a Monte Carlo study
NASA Astrophysics Data System (ADS)
Brangian, Claudio; Kob, Walter; Binder, Kurt
2002-01-01
We investigate by means of Monte Carlo simulations the fully connected p-state Potts model for different system sizes in order to see how the static and dynamic properties of a finite model compare with the, exactly known, behaviour of the system in the thermodynamic limit. Using p = 10 we are able to study the equilibrium dynamics for system sizes as large as N = 2560. We find that the static quantities, such as the energy, the entropy, the spin glass susceptibility as well as the distribution of the order parameter P(q) show very strong finite-size effects. From P(q) we calculate the fourth-order cumulant g4(N,T) and the Guerra parameter G(N,T) and show that these quantities cannot be used to locate the static transition temperature for the system sizes investigated. Also the spin-autocorrelation function C(t) shows strong finite-size effects in that it does not show a plateau even for temperatures around the dynamical critical temperature TD. We show that the dependence on N and T of the α-relaxation time can be understood by means of a dynamical finite-size scaling ansatz. C(t) does not obey the time-temperature superposition principle for temperatures around TD, but does so for significantly lower T. Finally we study the relaxation dynamics of the individual spins and show that their dependence on time depends strongly on the chosen spin, i.e. that the system is dynamically very heterogeneous, which explains the non-exponentiality of C(t).
NASA Astrophysics Data System (ADS)
Scianna, Marco; Preziosi, Luigi
2014-03-01
Cell migration is fundamental in a wide variety of physiological and pathological phenomena, among other in cancer invasion and development. In particular, the migratory/invasive capability of single metastatic cells is fundamental in determining the malignancy of a solid tumor. Specific cell migration phenotypes result for instance from the reciprocal interplay between the biophysical and biochemical properties of both the malignant cells themselves and of the surrounding environment. In particular, the extracellular matrices (ECMs) forming connective tissues can provide both loosely organized zones and densely packed barriers, which may impact cell invasion mode and efficiency. The critical processes involved in cell movement within confined spaces are (i) the proteolytic activity of matrix metalloproteinases (MMPs) and (ii) the deformation of the entire cell body, and in particular of the nucleus. We here present an extended cellular Potts model (CPM) to simulate a bio-engineered matrix system, which tests the active motile behavior of a single cancer cell into narrow channels of different widths. As distinct features of our approach, the cell is modeled as a compartmentalized discrete element, differentiated in the nucleus and in the cytosolic region, while a directional shape-dependent movement is explicitly driven by the evolution of its polarity vector. As outcomes, we find that, in a large track, the tumor cell is not able to maintain a directional movement. On the contrary, a structure of subcellular width behaves as a contact guidance sustaining cell persistent locomotion. In particular, a MMP-deprived cell is able to repolarize and follow the micropattern geometry, while a full MMP activity leads to a secondary track expansion by degrading the matrix structure. Finally, we confirm that cell movement within a subnuclear structure can be achieved either by pericellular proteolysis or by a significant deformation of cell nucleus.
2-D Magnetohydrodynamic Modeling of A Pulsed Plasma Thruster
NASA Technical Reports Server (NTRS)
Thio, Y. C. Francis; Cassibry, J. T.; Wu, S. T.; Rodgers, Stephen L. (Technical Monitor)
2002-01-01
Experiments are being performed on the NASA Marshall Space Flight Center (MSFC) MK-1 pulsed plasma thruster. Data produced from the experiments provide an opportunity to further understand the plasma dynamics in these thrusters via detailed computational modeling. The detailed and accurate understanding of the plasma dynamics in these devices holds the key towards extending their capabilities in a number of applications, including their applications as high power (greater than 1 MW) thrusters, and their use for producing high-velocity, uniform plasma jets for experimental purposes. For this study, the 2-D MHD modeling code, MACH2, is used to provide detailed interpretation of the experimental data. At the same time, a 0-D physics model of the plasma initial phase is developed to guide our 2-D modeling studies.
2 1/2 -D compressible reconnection model
NASA Astrophysics Data System (ADS)
Skender, M.; Vršnak, B.
The exact solution of the jump conditions on the RD/SMS discontinuity system in a two-and-half-dimensional (2 1/2 -D) symmetrical reconnection model enables one to analyse the outflowing jet characteristics in dependence on the inflow velocity, and to follow changes in transition to the two-dimensional model. Implications arising from the exact solution and its relevance for solar flares are discussed.
Percivall Pott: tuberculous spondylitis.
Sternbach, G
1996-01-01
Tuberculous spondylitis, also known as Pott's disease, is an entity that produces a characteristic kyphotic deformity, and was described by Sir Percivall Pott in 1779 and 1782. The majority of his patients were infants and young children. Although the incidence of tuberculosis in the industrialized world has since declined dramatically, the number of cases of extrapulmonary disease, though small, has remained relatively unchanged. In developing countries, spondylitis is still generally a disease of children, but in Europe and North America, it more commonly involves older adults. Pott's spondylitis represents a reactivation of latent disease, frequently years after the initial infection. Clinical findings include complaints of back pain and symptoms of fever, chills, weight loss, malaise, and fatigue. Characteristically a late finding, paraplegia is occasionally the initial indicator of spinal involvement. There is an average delay of a year between the onset of symptoms and patient presentation. Plain spinal radiographs usually are the initial diagnostic modality utilized. Computed tomography scanning and magnetic resonance imaging can be used to further define the process. The differential diagnosis includes neoplasm, pyogenic or disseminated fungal infection, and sarcoid arthritis. PMID:8655942
NASA Astrophysics Data System (ADS)
Lykke Jacobsen, Jesper
2015-11-01
In previous work with Scullard, we have defined a graph polynomial P B (q, T) that gives access to the critical temperature T c of the q-state Potts model defined on a general two-dimensional lattice {L}. It depends on a basis B, containing n × m unit cells of {L}, and the relevant root T c(n, m) of P B (q, T) was observed to converge quickly to T c in the limit n,m\\to ∞ . Moreover, in exactly solvable cases there is no finite-size dependence at all. In this paper we show how to reformulate this method as an eigenvalue problem within the periodic Temperley-Lieb (TL) algebra. This corresponds to taking m\\to ∞ first, so that the bases B are semi-infinite cylinders of circumference n. The limit implies faster convergence in n, while maintaining the n-independence in exactly solvable cases. In this setup, T c(n) is determined by equating the largest eigenvalues of two topologically distinct sectors of the transfer matrix. Crucially, these two sectors determine the same critical exponent in the continuum limit, and the observed fast convergence is thus corroborated by results of conformal field theory. We obtain similar results for the dense and dilute phases of the O(N) loop model, using now a transfer matrix within the dilute periodic TL algebra. Compared with our previous study, the eigenvalue formulation allows us to double the size n for which T c(n) can be obtained, using the same computational effort. We study in details three significant cases: (i) bond percolation on the kagome lattice, up to n max = 14; (ii) site percolation on the square lattice, to n max = 21; and (iii) self-avoiding polygons on the square lattice, to n max = 19. Convergence properties of T c(n) and extrapolation schemes are studied in details for the first two cases. This leads to rather accurate values for the percolation thresholds: p c = 0.524 404 999 167 439(4) for bond percolation on the kagome lattice, and p c = 0.592 746 050 792 10(2) for site percolation on the square lattice.
Modelling RF sources using 2-D PIC codes
Eppley, K.R.
1993-03-01
In recent years, many types of RF sources have been successfully modelled using 2-D PIC codes. Both cross field devices (magnetrons, cross field amplifiers, etc.) and pencil beam devices (klystrons, gyrotrons, TWT`S, lasertrons, etc.) have been simulated. All these devices involve the interaction of an electron beam with an RF circuit. For many applications, the RF structure may be approximated by an equivalent circuit, which appears in the simulation as a boundary condition on the electric field (``port approximation``). The drive term for the circuit is calculated from the energy transfer between beam and field in the drift space. For some applications it may be necessary to model the actual geometry of the structure, although this is more expensive. One problem not entirely solved is how to accurately model in 2-D the coupling to an external waveguide. Frequently this is approximated by a radial transmission line, but this sometimes yields incorrect results. We also discuss issues in modelling the cathode and injecting the beam into the PIC simulation.
Modelling RF sources using 2-D PIC codes
Eppley, K.R.
1993-03-01
In recent years, many types of RF sources have been successfully modelled using 2-D PIC codes. Both cross field devices (magnetrons, cross field amplifiers, etc.) and pencil beam devices (klystrons, gyrotrons, TWT'S, lasertrons, etc.) have been simulated. All these devices involve the interaction of an electron beam with an RF circuit. For many applications, the RF structure may be approximated by an equivalent circuit, which appears in the simulation as a boundary condition on the electric field ( port approximation''). The drive term for the circuit is calculated from the energy transfer between beam and field in the drift space. For some applications it may be necessary to model the actual geometry of the structure, although this is more expensive. One problem not entirely solved is how to accurately model in 2-D the coupling to an external waveguide. Frequently this is approximated by a radial transmission line, but this sometimes yields incorrect results. We also discuss issues in modelling the cathode and injecting the beam into the PIC simulation.
Unitary matrix models and 2D quantum gravity
Dalley, S. . Joseph Henry Labs.); Johnson, C.V.; Morris, T.R. . Dept. of Physics); Watterstam, A. )
1992-09-21
In this paper the KdV and modified KdV integrable hierarchies are shown to be different descriptions of the same 2D gravitational system - open-closed string theory. Non-perturbative solutions of the multicritical unitary matrix models map to non-singular solutions of the renormalization group equation for the string susceptibility, [P, Q] = Q. The authors also demonstrate that the large-N solutions of unitary matrix integrals in external fields, studied by Gross and Newman, equal the non-singular pure closed-string solutions of [[bar P], Q] = Q.
2D numerical modelling of meandering channel formation
NASA Astrophysics Data System (ADS)
XIAO, Y.; ZHOU, G.; YANG, F. S.
2016-03-01
A 2D depth-averaged model for hydrodynamic sediment transport and river morphological adjustment was established. The sediment transport submodel takes into account the influence of non-uniform sediment with bed surface armoring and considers the impact of secondary flow in the direction of bed-load transport and transverse slope of the river bed. The bank erosion submodel incorporates a simple simulation method for updating bank geometry during either degradational or aggradational bed evolution. Comparison of the results obtained by the extended model with experimental and field data, and numerical predictions validate that the proposed model can simulate grain sorting in river bends and duplicate the characteristics of meandering river and its development. The results illustrate that by using its control factors, the improved numerical model can be applied to simulate channel evolution under different scenarios and improve understanding of patterning processes.
Brane brick models and 2 d (0 , 2) triality
NASA Astrophysics Data System (ADS)
Franco, Sebastián; Lee, Sangmin; Seong, Rak-Kyeong
2016-05-01
We provide a brane realization of 2 d (0 , 2) Gadde-Gukov-Putrov triality in terms of brane brick models. These are Type IIA brane configurations that are T-dual to D1-branes over singular toric Calabi-Yau 4-folds. Triality translates into a local transformation of brane brick models, whose simplest representative is a cube move. We present explicit examples and construct their triality networks. We also argue that the classical mesonic moduli space of brane brick model theories, which corresponds to the probed Calabi-Yau 4-fold, is invariant under triality. Finally, we discuss triality in terms of phase boundaries, which play a central role in connecting Calabi-Yau 4-folds to brane brick models.
Experimental validation of 2D profile photoresist shrinkage model
NASA Astrophysics Data System (ADS)
Bunday, Benjamin; Cordes, Aaron; Self, Andy; Ferry, Lorena; Danilevsky, Alex
2011-03-01
For many years, lithographic resolution has been the main obstacle in allowing the pace of transistor densification to meet Moore's Law. For the 32 nm node and beyond, new lithography techniques will be used, including immersion ArF (iArF) lithography and extreme ultraviolet lithography (EUVL). As in the past, these techniques will use new types of photoresists with the capability to print smaller feature widths and pitches. These smaller feature sizes will also require the use of thinner layers of photoresists, such as under 100 nm. In previous papers, we focused on ArF and iArF photoresist shrinkage. We evaluated the magnitude of shrinkage for both R&D and mature resists as a function of chemical formulation, lithographic sensitivity, scanning electron microscope (SEM) beam condition, and feature size. Shrinkage results were determined by the well accepted methodology described in SEMATECH's CD-SEM Unified Specification. In other associated works, we first developed a 1-D model for resist shrinkage for the bottom linewidth and then a 2-D profile model that accounted for shrinkage of all aspects of a trapezoidal profile along a given linescan. A fundamental understanding of the phenomenology of the shrinkage trends was achieved, including how the shrinkage behaves differently for different sized and shaped features. In the 1-D case, calibration of the parameters to describe the photoresist material and the electron beam was all that was required to fit the models to real shrinkage data, as long as the photoresist was thick enough that the beam could not penetrate the entire layer of resist. The later 2-D model included improvements for solving the CD shrinkage in thin photoresists, which is now of great interest for upcoming realistic lithographic processing to explore the change in resist profile with electron dose and to predict the influence of initial resist profile on shrinkage characteristics. The 2-D model also included shrinkage due to both the primary
Nature of ordering in Potts spin glasses
NASA Astrophysics Data System (ADS)
Banavar, Jayanth R.; Cieplak, Marek
1989-09-01
The zero-temperature scaling approach is applied to the three-state Potts spin glass. Our results suggest that the +/-J model has a lower critical dimensionality greater than 3, whereas for the Gaussian model this dimensionality is slightly less than 3. The T=0 scaling exponents are estimated in D=2 and 3. The results are based mostly on exact transfer-matrix calculations and on a Monte Carlo quenching procedure.
A 2D channel-clogging biofilm model.
Winstanley, H F; Chapwanya, M; Fowler, A C; O'Brien, S B G
2015-09-01
We present a model of biofilm growth in a long channel where the biomass is assumed to have the rheology of a viscous polymer solution. We examine the competition between growth and erosion-like surface detachment due to the flow. A particular focus of our investigation is the effect of the biofilm growth on the fluid flow in the pores, and the issue of whether biomass can grow sufficiently to shut off fluid flow through the pores, thus clogging the pore space. Net biofilm growth is coupled along the pore length via flow rate and nutrient transport in the pore flow. Our 2D model extends existing results on stability of 1D steady state biofilm thicknesses to show that, in the case of flows driven by a fixed pressure drop, full clogging of the pore can indeed happen in certain cases dependent on the functional form of the detachment term. PMID:25240390
Mass loss in 2D rotating stellar models
Lovekin, Caterine; Deupree, Bob
2010-10-05
Radiatively driven mass loss is an important factor in the evolution of massive stars . The mass loss rates depend on a number of stellar parameters, including the effective temperature and luminosity. Massive stars are also often rapidly rotating, which affects their structure and evolution. In sufficiently rapidly rotating stars, both the effective temperature and radius vary significantly as a function of latitude, and hence mass loss rates can vary appreciably between the poles and the equator. In this work, we discuss the addition of mass loss to a 2D stellar evolution code (ROTORC) and compare evolution sequences with and without mass loss. Preliminary results indicate that a full 2D calculation of mass loss using the local effective temperature and luminosity can significantly affect the distribution of mass loss in rotating main sequence stars. More mass is lost from the pole than predicted by 1D models, while less mass is lost at the equator. This change in the distribution of mass loss will affect the angular momentum loss, the surface temperature and luminosity, and even the interior structure of the star. After a single mass loss event, these effects are small, but can be expected to accumulate over the course of the main sequence evolution.
2D Quantum Transport Modeling in Nanoscale MOSFETs
NASA Technical Reports Server (NTRS)
Svizhenko, Alexei; Anantram, M. P.; Govindan, T. R.; Biegel, Bryan
2001-01-01
With the onset of quantum confinement in the inversion layer in nanoscale MOSFETs, behavior of the resonant level inevitably determines all device characteristics. While most classical device simulators take quantization into account in some simplified manner, the important details of electrostatics are missing. Our work addresses this shortcoming and provides: (a) a framework to quantitatively explore device physics issues such as the source-drain and gate leakage currents, DIBL, and threshold voltage shift due to quantization, and b) a means of benchmarking quantum corrections to semiclassical models (such as density- gradient and quantum-corrected MEDICI). We have developed physical approximations and computer code capable of realistically simulating 2-D nanoscale transistors, using the non-equilibrium Green's function (NEGF) method. This is the most accurate full quantum model yet applied to 2-D device simulation. Open boundary conditions, oxide tunneling and phase-breaking scattering are treated on equal footing. Electrons in the ellipsoids of the conduction band are treated within the anisotropic effective mass approximation. Quantum simulations are focused on MIT 25, 50 and 90 nm "well- tempered" MOSFETs and compared to classical and quantum corrected models. The important feature of quantum model is smaller slope of Id-Vg curve and consequently higher threshold voltage. These results are quantitatively consistent with I D Schroedinger-Poisson calculations. The effect of gate length on gate-oxide leakage and sub-threshold current has been studied. The shorter gate length device has an order of magnitude smaller current at zero gate bias than the longer gate length device without a significant trade-off in on-current. This should be a device design consideration.
Cascading rainfall uncertainties into 2D inundation impact models
NASA Astrophysics Data System (ADS)
Souvignet, Maxime; de Almeida, Gustavo; Champion, Adrian; Garcia Pintado, Javier; Neal, Jeff; Freer, Jim; Cloke, Hannah; Odoni, Nick; Coxon, Gemma; Bates, Paul; Mason, David
2013-04-01
Existing precipitation products show differences in their spatial and temporal distribution and several studies have presented how these differences influence the ability to predict hydrological responses. However, an atmospheric-hydrologic-hydraulic uncertainty cascade is seldom explored and how, importantly, input uncertainties propagate through this cascade is still poorly understood. Such a project requires a combination of modelling capabilities, runoff generation predictions based on those rainfall forecasts, and hydraulic flood wave propagation based on the runoff predictions. Accounting for uncertainty in each component is important in decision making for issuing flood warnings, monitoring or planning. We suggest a better understanding of uncertainties in inundation impact modelling must consider these differences in rainfall products. This will improve our understanding of the input uncertainties on our predictive capability. In this paper, we propose to address this issue by i) exploring the effects of errors in rainfall on inundation predictive capacity within an uncertainty framework, i.e. testing inundation uncertainty against different comparable meteorological conditions (i.e. using different rainfall products). Our method cascades rainfall uncertainties into a lumped hydrologic model (FUSE) within the GLUE uncertainty framework. The resultant prediction uncertainties in discharge provide uncertain boundary conditions, which are cascaded into a simplified shallow water 2D hydraulic model (LISFLOOD-FP). Rainfall data captured by three different measurement techniques - rain gauges, gridded data and numerical weather predictions (NWP) models are used to assess the combined input data and model parameter uncertainty. The study is performed in the Severn catchment over the period between June and July 2007, where a series of rainfall events causing record floods in the study area). Changes in flood area extent are compared and the uncertainty envelope is
Duality Between Spin Networks and the 2D Ising Model
NASA Astrophysics Data System (ADS)
Bonzom, Valentin; Costantino, Francesco; Livine, Etera R.
2016-06-01
The goal of this paper is to exhibit a deep relation between the partition function of the Ising model on a planar trivalent graph and the generating series of the spin network evaluations on the same graph. We provide respectively a fermionic and a bosonic Gaussian integral formulation for each of these functions and we show that they are the inverse of each other (up to some explicit constants) by exhibiting a supersymmetry relating the two formulations. We investigate three aspects and applications of this duality. First, we propose higher order supersymmetric theories that couple the geometry of the spin networks to the Ising model and for which supersymmetric localization still holds. Secondly, after interpreting the generating function of spin network evaluations as the projection of a coherent state of loop quantum gravity onto the flat connection state, we find the probability distribution induced by that coherent state on the edge spins and study its stationary phase approximation. It is found that the stationary points correspond to the critical values of the couplings of the 2D Ising model, at least for isoradial graphs. Third, we analyze the mapping of the correlations of the Ising model to spin network observables, and describe the phase transition on those observables on the hexagonal lattice. This opens the door to many new possibilities, especially for the study of the coarse-graining and continuum limit of spin networks in the context of quantum gravity.
Effects of Agent's Repulsion in 2d Flocking Models
NASA Astrophysics Data System (ADS)
Moussa, Najem; Tarras, Iliass; Mazroui, M'hammed; Boughaleb, Yahya
In nature many animal groups, such as fish schools or bird flocks, clearly display structural order and appear to move as a single coherent entity. In order to understand the complex behavior of these systems, many models have been proposed and tested so far. This paper deals with an extension of the Vicsek model, by including a second zone of repulsion, where each agent attempts to maintain a minimum distance from the others. The consideration of this zone in our study seems to play an important role during the travel of agents in the two-dimensional (2D) flocking models. Our numerical investigations show that depending on the basic ingredients such as repulsion radius (R1), effect of density of agents (ρ) and noise (η), our nonequilibrium system can undergo a kinetic phase transition from no transport to finite net transport. For different values of ρ, kinetic phase diagrams in the plane (η ,R1) are found. Implications of these findings are discussed.
2-D Model for Normal and Sickle Cell Blood Microcirculation
NASA Astrophysics Data System (ADS)
Tekleab, Yonatan; Harris, Wesley
2011-11-01
Sickle cell disease (SCD) is a genetic disorder that alters the red blood cell (RBC) structure and function such that hemoglobin (Hb) cannot effectively bind and release oxygen. Previous computational models have been designed to study the microcirculation for insight into blood disorders such as SCD. Our novel 2-D computational model represents a fast, time efficient method developed to analyze flow dynamics, O2 diffusion, and cell deformation in the microcirculation. The model uses a finite difference, Crank-Nicholson scheme to compute the flow and O2 concentration, and the level set computational method to advect the RBC membrane on a staggered grid. Several sets of initial and boundary conditions were tested. Simulation data indicate a few parameters to be significant in the perturbation of the blood flow and O2 concentration profiles. Specifically, the Hill coefficient, arterial O2 partial pressure, O2 partial pressure at 50% Hb saturation, and cell membrane stiffness are significant factors. Results were found to be consistent with those of Le Floch [2010] and Secomb [2006].
Ab initio modeling of 2D layered organohalide lead perovskites.
Fraccarollo, Alberto; Cantatore, Valentina; Boschetto, Gabriele; Marchese, Leonardo; Cossi, Maurizio
2016-04-28
A number of 2D layered perovskites A2PbI4 and BPbI4, with A and B mono- and divalent ammonium and imidazolium cations, have been modeled with different theoretical methods. The periodic structures have been optimized (both in monoclinic and in triclinic systems, corresponding to eclipsed and staggered arrangements of the inorganic layers) at the DFT level, with hybrid functionals, Gaussian-type orbitals and dispersion energy corrections. With the same methods, the various contributions to the solid stabilization energy have been discussed, separating electrostatic and dispersion energies, organic-organic intralayer interactions and H-bonding effects, when applicable. Then the electronic band gaps have been computed with plane waves, at the DFT level with scalar and full relativistic potentials, and including the correlation energy through the GW approximation. Spin orbit coupling and GW effects have been combined in an additive scheme, validated by comparing the computed gap with well known experimental and theoretical results for a model system. Finally, various contributions to the computed band gaps have been discussed on some of the studied systems, by varying some geometrical parameters and by substituting one cation in another's place. PMID:27131557
2-D Inhomogeneous Modeling of the Solar CO Bands
NASA Astrophysics Data System (ADS)
Ayres, T. R.
1996-05-01
The recent discovery of off-limb emissions in the mid-IR ( ~ 5 mu m) vibration-rotation bands of solar carbon monoxide (CO) has sparked new interest in the formation of the molecular lines, and their ability to diagnose thermal conditions at high altitudes. The off-limb extensions of the strong CO lines indicate the penetration of cool material (T ~ 3500 K) several hundred kilometers into the otherwise hot (T ~ 6000 K) chromosphere. The origin of the cool gas, and its role in the thermal energy balance, remain controversial. The interpretation of the CO observations must rely heavily upon numerical modeling, in particular highly-inhomogeneous thermal structures arrayed in a 2-D scheme that can properly treat the geometry of the grazing rays at the solar limb. The radiation transport, itself, is especially simple for the CO off-limb emissions, because the fundamental bands form quite close to LTE (high collision rates; low spontaneous decay rates) and the background continuum is purely thermal as well (f--f transitions in H(-) and H). Thus, the geometrical aspects of the problem can be treated in considerably more detail than would be practical for typical NLTE scattering lines. I describe the recent modeling efforts, and the diagnostic potential of the CO bands for future observational studies of inhomogeneous surface structure on the Sun, and on other stars of late spectral type. This work was supported by NSF grant AST-9218063 to the University of Colorado.
Ab initio modeling of 2D layered organohalide lead perovskites
NASA Astrophysics Data System (ADS)
Fraccarollo, Alberto; Cantatore, Valentina; Boschetto, Gabriele; Marchese, Leonardo; Cossi, Maurizio
2016-04-01
A number of 2D layered perovskites A2PbI4 and BPbI4, with A and B mono- and divalent ammonium and imidazolium cations, have been modeled with different theoretical methods. The periodic structures have been optimized (both in monoclinic and in triclinic systems, corresponding to eclipsed and staggered arrangements of the inorganic layers) at the DFT level, with hybrid functionals, Gaussian-type orbitals and dispersion energy corrections. With the same methods, the various contributions to the solid stabilization energy have been discussed, separating electrostatic and dispersion energies, organic-organic intralayer interactions and H-bonding effects, when applicable. Then the electronic band gaps have been computed with plane waves, at the DFT level with scalar and full relativistic potentials, and including the correlation energy through the GW approximation. Spin orbit coupling and GW effects have been combined in an additive scheme, validated by comparing the computed gap with well known experimental and theoretical results for a model system. Finally, various contributions to the computed band gaps have been discussed on some of the studied systems, by varying some geometrical parameters and by substituting one cation in another's place.
NASA Astrophysics Data System (ADS)
Jacobsen, Jesper Lykke; Salas, Jesús; Sokal, Alan D.
2003-09-01
We study the chromatic polynomial P G ( q) for m× n triangular-lattice strips of widths m≤12P,9F (with periodic or free transverse boundary conditions, respectively) and arbitrary lengths n (with free longitudinal boundary conditions). The chromatic polynomial gives the zero-temperature limit of the partition function for the q-state Potts antiferromagnet. We compute the transfer matrix for such strips in the Fortuin-Kasteleyn representation and obtain the corresponding accumulation sets of chromatic zeros in the complex q-plane in the limit n→∞. We recompute the limiting curve obtained by Baxter in the thermodynamic limit m, n→∞ and find new interesting features with possible physical consequences. Finally, we analyze the isolated limiting points and their relation with the Beraha numbers.
A 2D electrohydrodynamic model for electrorotation of fluid drops.
Feng, James Q
2002-02-01
A theoretical analysis of spontaneous electrorotation of deformable fluid drops in a DC electric field is presented with a 2D electrohydrodynamic model. The fluids in the system are assumed to be leaky dielectric and Newtonian. If the rotating flow is dominant over the cellular convection type of electrohydrodynamic flow, closed-form solutions for drops of small deformations can be obtained. Because the governing equations are in general nonlinear even when drop deformations are ignored, the general solution for even undeformed drop takes a form of infinite series and can only be evaluated by numerical means. Both closed-form solutions for special cases and numerical solutions for more general cases are obtained here to describe steady-state field variables and first-order drop deformations. In a DC electric field of strength beyond the threshold value, spontaneous electrorotation of a drop is shown to occur when charge relaxation in the surrounding fluid is faster than the fluid inside the drop. With increasing the strength of the applied electric field from the threshold for onset of electrorotation, the axis of drop contraction deviates from from that of the applied electric field in the direction of the rotating flow with an angle increasing with the field strength. PMID:16290391
2D modeling of electromagnetic waves in cold plasmas
Crombé, K.; Van Eester, D.; Koch, R.; Kyrytsya, V.
2014-02-12
The consequences of sheath (rectified) electric fields, resulting from the different mobility of electrons and ions as a response to radio frequency (RF) fields, are a concern for RF antenna design as it can cause damage to antenna parts, limiters and other in-vessel components. As a first step to a more complete description, the usual cold plasma dielectric description has been adopted, and the density profile was assumed to be known as input. Ultimately, the relevant equations describing the wave-particle interaction both on the fast and slow timescale will need to be tackled but prior to doing so was felt as a necessity to get a feeling of the wave dynamics involved. Maxwell's equations are solved for a cold plasma in a 2D antenna box with strongly varying density profiles crossing also lower hybrid and ion-ion hybrid resonance layers. Numerical modelling quickly becomes demanding on computer power, since a fine grid spacing is required to capture the small wavelengths effects of strongly evanescent modes.
Numerical modeling of seismogram envelopes in 2-D random media
NASA Astrophysics Data System (ADS)
Fehler, Michael
2002-11-01
Several portions of seismograms recorded from regional earthquakes cannot be easily explained as resulting from waves propagating along deterministic paths within the Earth. For example, seismic coda, which is the tail portion of the seismogram of an earthquake recorded at distances of less than 100 km, is considered as resulting from waves that are multiply scattered from random heterogeneities in the Earth's lithosphere. At greater distances, observations that the duration of the initial arriving wave packet is much longer than the source-time duration is explained as being due to multiple forward scattering along the path between the source and the receiver. To investigate these phenomena, we use a finite difference method to numerically simulate 2-D scalar-waves that propagate through random media characterized by a von Karman autocorrelation function. Such media are considered to be appropriate models for the random component of the structure of the Earth's lithosphere. We investigate the characteristics of the resulting wavefields and compare them with those of observed seismograms.
VAM2D: Variably saturated analysis model in two dimensions
Huyakorn, P.S.; Kool, J.B.; Wu, Y.S. )
1991-10-01
This report documents a two-dimensional finite element model, VAM2D, developed to simulate water flow and solute transport in variably saturated porous media. Both flow and transport simulation can be handled concurrently or sequentially. The formulation of the governing equations and the numerical procedures used in the code are presented. The flow equation is approximated using the Galerkin finite element method. Nonlinear soil moisture characteristics and atmospheric boundary conditions (e.g., infiltration, evaporation and seepage face), are treated using Picard and Newton-Raphson iterations. Hysteresis effects and anisotropy in the unsaturated hydraulic conductivity can be taken into account if needed. The contaminant transport simulation can account for advection, hydrodynamic dispersion, linear equilibrium sorption, and first-order degradation. Transport of a single component or a multi-component decay chain can be handled. The transport equation is approximated using an upstream weighted residual method. Several test problems are presented to verify the code and demonstrate its utility. These problems range from simple one-dimensional to complex two-dimensional and axisymmetric problems. This document has been produced as a user's manual. It contains detailed information on the code structure along with instructions for input data preparation and sample input and printed output for selected test problems. Also included are instructions for job set up and restarting procedures. 44 refs., 54 figs., 24 tabs.
Predicting Fracture Using 2D Finite Element Modeling
MacNeil, J.A.M.; Adachi, J.D; Goltzman, D; Josse, R.G; Kovacs, C.S; Prior, J.C; Olszynski, W; Davison, K.S.; Kaiser, S.M
2013-01-01
A decrease in bone density at the hip or spine has been shown to increase the risk of fracture. A limitation of the bone mineral density (BMD) measurement is that it provides only a measure of a bone samples average density when projected onto a 2D surface. Effectively, what determines bone fracture is whether an applied load exceeds ultimate strength, with both bone tissue material properties (can be approximated through bone density), and geometry playing a role. The goal of this project was to use bone geometry and BMD obtained from radiographs and DXA measurements respectively to estimate fracture risk, using a two-dimensional finite element model (FEM) of the sagittal plane of lumbar vertebrae. The Canadian Multicenter Osteoporosis Study (CaMos) data was used for this study. There were 4194 men and women over the age of 50 years, with 786 having fractures. Each subject had BMD testing and radiographs of their lumbar vertebrae. A single two dimensional FEM of the first to fourth lumbar vertebra was automatically generated for each subject. Bone tissue stiffness was assigned based on the BMD of the individual vertebrae, and adjusted for patient age. Axial compression boundary conditions were applied with a force proportional to body mass. The resulting overall strain from the applied force was found. Men and women were analyzed separately. At baseline, the sensitivity of BMD to predict fragility fractures in women and men was 3.77 % and 0.86 %, while the sensitivity of FEM to predict fragility fractures for women and men was 10.8 % and 11.3 %. The FEM ROC curve demonstrated better performance compared to BMD. The relative risk of being considered at high fracture risk using FEM at baseline, was a better predictor of 5 year incident fragility fracture risk compared to BMD. PMID:21959170
A 2-D modeling contribution to river training design
NASA Astrophysics Data System (ADS)
Anselmo, V.; Coccato, M.; Frank, E.; Guiot, E.
2003-04-01
In the last ten years, two major floods (1994 and 2000) occurred in North-western Italy and a few questions arose about the hydraulic behavior of the streams as well about the choice and design of protection works. The River Po Authority is oriented to assign "design flows" in selected cross sections of the main rivers, as a design constraint to land management and river training in the upstream areas. Since the region has been fully developed in the last century and somewhere it is overcrowded, space for spreading flood flows is strongly reduced, while large partially developed areas are prone to flooding and residents ask for being protected. A first question regards the contribution to flood peak reduction of the still existing flood prone undeveloped areas beside the main channels, and a second question is about the best way to improve such a behavior. A 2-D unsteady model (Sobek, originated by Delft Hydraulics) was applied to a 25 km reach of the upper River Po. The effects of major floods was investigated, proving that the reduction of the peak flow is minor mainly because of the rather high slope (0.0015) and of the flood volume (500·106 m3). Aiming to enhance the role of the flooded areas, a few types of river training schemes were checked, with particular attention to the so called "Po system". Depth and extension of compartments are the main variables. Results are interesting, but must be evaluated in front of the cost-benefit analysis. The investigation is being extended to more steep stream reaches (up to 0.01), which are representative of the main upper Po tributaries.
A 2D simulation model for urban flood management
NASA Astrophysics Data System (ADS)
Price, Roland; van der Wielen, Jonathan; Velickov, Slavco; Galvao, Diogo
2014-05-01
The European Floods Directive, which came into force on 26 November 2007, requires member states to assess all their water courses and coast lines for risk of flooding, to map flood extents and assets and humans at risk, and to take adequate and coordinated measures to reduce the flood risk in consultation with the public. Flood Risk Management Plans are to be in place by 2015. There are a number of reasons for the promotion of this Directive, not least because there has been much urban and other infrastructural development in flood plains, which puts many at risk of flooding along with vital societal assets. In addition there is growing awareness that the changing climate appears to be inducing more frequent extremes of rainfall with a consequent increases in the frequency of flooding. Thirdly, the growing urban populations in Europe, and especially in the developing countries, means that more people are being put at risk from a greater frequency of urban flooding in particular. There are urgent needs therefore to assess flood risk accurately and consistently, to reduce this risk where it is important to do so or where the benefit is greater than the damage cost, to improve flood forecasting and warning, to provide where necessary (and possible) flood insurance cover, and to involve all stakeholders in decision making affecting flood protection and flood risk management plans. Key data for assessing risk are water levels achieved or forecasted during a flood. Such levels should of course be monitored, but they also need to be predicted, whether for design or simulation. A 2D simulation model (PriceXD) solving the shallow water wave equations is presented specifically for determining flood risk, assessing flood defense schemes and generating flood forecasts and warnings. The simulation model is required to have a number of important properties: -Solve the full shallow water wave equations using a range of possible solutions; -Automatically adjust the time step and
A 2D simulation model for urban flood management
NASA Astrophysics Data System (ADS)
Price, Roland; van der Wielen, Jonathan; Velickov, Slavco; Galvao, Diogo
2014-05-01
The European Floods Directive, which came into force on 26 November 2007, requires member states to assess all their water courses and coast lines for risk of flooding, to map flood extents and assets and humans at risk, and to take adequate and coordinated measures to reduce the flood risk in consultation with the public. Flood Risk Management Plans are to be in place by 2015. There are a number of reasons for the promotion of this Directive, not least because there has been much urban and other infrastructural development in flood plains, which puts many at risk of flooding along with vital societal assets. In addition there is growing awareness that the changing climate appears to be inducing more frequent extremes of rainfall with a consequent increases in the frequency of flooding. Thirdly, the growing urban populations in Europe, and especially in the developing countries, means that more people are being put at risk from a greater frequency of urban flooding in particular. There are urgent needs therefore to assess flood risk accurately and consistently, to reduce this risk where it is important to do so or where the benefit is greater than the damage cost, to improve flood forecasting and warning, to provide where necessary (and possible) flood insurance cover, and to involve all stakeholders in decision making affecting flood protection and flood risk management plans. Key data for assessing risk are water levels achieved or forecasted during a flood. Such levels should of course be monitored, but they also need to be predicted, whether for design or simulation. A 2D simulation model (PriceXD) solving the shallow water wave equations is presented specifically for determining flood risk, assessing flood defense schemes and generating flood forecasts and warnings. The simulation model is required to have a number of important properties: -Solve the full shallow water wave equations using a range of possible solutions; -Automatically adjust the time step and
The Implementation of C-ID, R2D2 Model on Learning Reading Comprehension
ERIC Educational Resources Information Center
Rayanto, Yudi Hari; Rusmawan, Putu Ngurah
2016-01-01
The purposes of this research are to find out, (1) whether C-ID, R2D2 model is effective to be implemented on learning Reading comprehension, (2) college students' activity during the implementation of C-ID, R2D2 model on learning Reading comprehension, and 3) college students' learning achievement during the implementation of C-ID, R2D2 model on…
NASA Astrophysics Data System (ADS)
Chae, Dongho; Constantin, Peter; Wu, Jiahong
2014-09-01
We give an example of a well posed, finite energy, 2D incompressible active scalar equation with the same scaling as the surface quasi-geostrophic equation and prove that it can produce finite time singularities. In spite of its simplicity, this seems to be the first such example. Further, we construct explicit solutions of the 2D Boussinesq equations whose gradients grow exponentially in time for all time. In addition, we introduce a variant of the 2D Boussinesq equations which is perhaps a more faithful companion of the 3D axisymmetric Euler equations than the usual 2D Boussinesq equations.
NASA Astrophysics Data System (ADS)
Dai, Yan-Wei; Hu, Bing-Quan; Zhao, Jian-Hui; Zhou, Huan-Qiang
2010-09-01
The ground-state fidelity per lattice site is computed for the quantum three-state Potts model in a transverse magnetic field on an infinite-size lattice in one spatial dimension in terms of the infinite matrix product state algorithm. It is found that, on the one hand, a pinch point is identified on the fidelity surface around the critical point, and on the other hand, the ground-state fidelity per lattice site exhibits bifurcations at pseudo critical points for different values of the truncation dimension, which in turn approach the critical point as the truncation dimension becomes large. This implies that the ground-state fidelity per lattice site enables us to capture spontaneous symmetry breaking when the control parameter crosses the critical value. In addition, a finite-entanglement scaling of the von Neumann entropy is performed with respect to the truncation dimension, resulting in a precise determination of the central charge at the critical point. Finally, we compute the transverse magnetization, from which the critical exponent β is extracted from the numerical data.
2-D model of the streamer zone of a leader
NASA Astrophysics Data System (ADS)
Milikh, G. M.; Likhanskii, A. V.; Shneider, M. N.; Raina, A.; George, A.
2016-02-01
Formation of the streamer zone of a leader is an outstanding problem in the physics of electric discharges which is relevant to laboratory leaders, as well as to the leaders formed by lightning. Despite substantial progress in the theoretical understanding of this complicated phenomenon, significant puzzles, such as the low propagation velocity of a leader compared to the fast streamers, remain. The objective of this paper is to present 2-D plasma simulations of the formation and propagation of the streamer zone of a leader. In these simulations we will generate a group of streamers that propagate in a discharge gap while interacting with each other. It is shown that interaction between the streamers significantly reduces their propagation velocity. This explains why the leader, which consists of many streamers, is much slower than a single streamer formed in the same discharge gap. It is shown that the mean velocity suppression of the group of streamers is determined by the inter-streamer distance. The critical value of the packing factor of the streamers at which the interactions between them can be neglected, and thus the discussed process can be treated as caused by a single streamer, is obtained.
Radiological evaluation of Pott puffy tumor
Wells, R.G.; Sty, J.R.; Landers, A.D.
1986-03-14
The Pott puffy tumor represents frontal osteomyelitis with subperiosteal (pericranial) abscess, secondary to frontal sinusitis. Pott puffy tumor is one of several potential complications of infection of a frontal sinus. Computed tomography (CT) and radionuclide bone imaging have proved to be invaluable tools in the diagnosis of frontal sinusitis, osteomyelitis, and intracranial infection. This article details the radionuclide bone imaging and findings on CT in three children with Pott puffy tumor, as well as the clinical features and pathophysicological mechanisms.
2D quantum double models from a 3D perspective
NASA Astrophysics Data System (ADS)
Bernabé Ferreira, Miguel Jorge; Padmanabhan, Pramod; Teotonio-Sobrinho, Paulo
2014-09-01
In this paper we look at three dimensional (3D) lattice models that are generalizations of the state sum model used to define the Kuperberg invariant of 3-manifolds. The partition function is a scalar constructed as a tensor network where the building blocks are tensors given by the structure constants of an involutory Hopf algebra A. These models are very general and are hard to solve in its entire parameter space. One can obtain familiar models, such as ordinary gauge theories, by letting A be the group algebra {C}(G) of a discrete group G and staying on a certain region of the parameter space. We consider the transfer matrix of the model and show that quantum double Hamiltonians are derived from a particular choice of the parameters. Such a construction naturally leads to the star and plaquette operators of the quantum double Hamiltonians, of which the toric code is a special case when A={C}({{{Z}}_{2}}). This formulation is convenient to study ground states of these generalized quantum double models where they can naturally be interpreted as tensor network states. For a surface Σ, the ground state degeneracy is determined by the Kuperberg 3-manifold invariant of \\Sigma \\times {{S}^{1}}. It is also possible to obtain extra models by simply enlarging the allowed parameter space but keeping the solubility of the model. While some of these extra models have appeared before in the literature, our 3D perspective allows for an uniform description of them.
Spin-spin correlation functions of spin systems coupled to 2-d quantum gravity for 0 < c < 1.
NASA Astrophysics Data System (ADS)
Ambjørn, J.; Anagnostopoulos, K. N.; Magnea, U.; Thorleifsson, G.
1997-02-01
We perform Monte Carlo simulations of 2-d dynamically triangulated surfaces coupled to Ising and three-states Potts model matter. By measuring spin-spin correlation functions as a function of the geodesic distance we provide substantial evidence for a diverging correlation length at βc. The corresponding scaling exponents are directly related to the KPZ exponents of the matter fields as conjectured in [4].
Li, Jonathan F.; Lowengrub, John
2014-01-01
There are numerous biological examples where genes associated with migratory ability of cells also confer the cells with an increased fitness even though these genes may not have any known effect on the cell mitosis rates. Here, we provide insight into these observations by analyzing the effects of cell migration, compression, and contact inhibition on the growth of tumor cell clusters using the Cellular Potts Model (CPM) in a monolayer geometry. This is a follow-up of a previous study (Thalhauser et al., Biol. Direct, 2010, 5:21) in which a Moran-type model was used to study the interaction of cell proliferation, migratory potential and death on the emergence of invasive phenotypes. Here, we extend the study to include the effects of cell size and shape. In particular, we investigate the interplay between cell motility and compressibility within the CPM and find that the CPM predicts that increased cell motility leads to smaller cells. This is an artifact in the CPM. An analysis of the CPM reveals an explicit inverse-relationship between the cell stiffness and motility parameters. We use this relationship to compensate for motility-induced changes in cell size in the CPM so that in the corrected CPM, cell size is independent of the cell motility. We find that subject to comparable levels of compression, clusters of motile cells grow faster than clusters of less motile cells, in qualitative agreement with biological observations and our previous study. Increasing compression tends to reduce growth rates. Contact inhibition penalizes clumped cells by halting their growth and gives motile cells an even greater advantage. Finally, our model predicts cell size distributions that are consistent with those observed in clusters of neuroblastoma cells cultured in low and high density conditions. PMID:24211749
A fully coupled 2D model of equiaxed eutectic solidification
Charbon, Ch.; LeSar, R.
1995-12-31
We propose a model of equiaxed eutectic solidification that couples the macroscopic level of heat diffusion with the microscopic level of nucleation and growth of the eutectic grains. The heat equation with the source term corresponding to the latent heat release due to solidification is calculated numerically by means of an implicit finite difference method. In the time stepping scheme, the evolution of solid fraction is deduced from a stochastic model of nucleation and growth which uses the local temperature (interpolated from the FDM mesh) to determine the local grain density and the local growth rate. The solid-liquid interface of each grain is tracked by using a subdivision of each grain perimeter in a large number of sectors. The state of each sector (i.e. whether it is still in contact with the liquid or already captured by an other grain) and the increase of radius of each grain during one time step allows one to compute the increase of solid fraction. As for deterministic models, the results of the model are the evolution of temperature and of solid fraction at any point of the sample. Moreover the model provides a complete picture of the microstructure, thus not limiting the microstructural information to the average grain density but allowing one to compute any stereological value of interest. We apply the model to the solidification of gray cast iron.
Improvement of a 2D numerical model of lava flows
NASA Astrophysics Data System (ADS)
Ishimine, Y.
2013-12-01
I propose an improved procedure that reduces an improper dependence of lava flow directions on the orientation of Digital Elevation Model (DEM) in two-dimensional simulations based on Ishihara et al. (in Lava Flows and Domes, Fink, JH eds., 1990). The numerical model for lava flow simulations proposed by Ishihara et al. (1990) is based on two-dimensional shallow water model combined with a constitutive equation for a Bingham fluid. It is simple but useful because it properly reproduces distributions of actual lava flows. Thus, it has been regarded as one of pioneer work of numerical simulations of lava flows and it is still now widely used in practical hazard prediction map for civil defense officials in Japan. However, the model include an improper dependence of lava flow directions on the orientation of DEM because the model separately assigns the condition for the lava flow to stop due to yield stress for each of two orthogonal axes of rectangular calculating grid based on DEM. This procedure brings a diamond-shaped distribution as shown in Fig. 1 when calculating a lava flow supplied from a point source on a virtual flat plane although the distribution should be circle-shaped. To improve the drawback, I proposed a modified procedure that uses the absolute value of yield stress derived from both components of two orthogonal directions of the slope steepness to assign the condition for lava flows to stop. This brings a better result as shown in Fig. 2. Fig. 1. (a) Contour plots calculated with the original model of Ishihara et al. (1990). (b) Contour plots calculated with a proposed model.
Stratosphere chemistry in a 2-D model with residual circulation
NASA Technical Reports Server (NTRS)
Guthrie, Paul D.; Jackman, Charles H.
1990-01-01
The objective of this research was to examine the effects of chemical perturbations on the stratosphere using models which can incorporate fully interactive radiative, chemical, and dynamical responses, in the context of a zonally averaged model. Model runs for the unperturbed, chlorine-perturbed and simultaneously chlorine-and CO2-perturbed cases were completed using the JPL-87 chemical kinetics data. The base case was analyzed and submitted for publication. The perturbed cases show substantial sensitivity of the predicted column ozone depletion to the perturbations affecting lower stratosphere temperature, but less to far dynamical perturbations. The column ozone distribution changed substantially when the kinetics data was changed. This implies a greater-than-expected uncertainty in predicted latitude distributions of ozone depletion, due to uncertainty about the accuracy and completeness of the chemical kinetics data set.
Development of CCHE2D embankment break model
Technology Transfer Automated Retrieval System (TEKTRAN)
Earthen embankment breach often results in detrimental impact on downstream residents and infrastructure, especially those located in the flooding zone. Embankment failures are most commonly caused by overtopping or internal erosion. This study is to develop a practical numerical model for simulat...
Phase Structure of the Random Zq Models in 2D
NASA Astrophysics Data System (ADS)
Sasamoto, T.; Nishimori, H.
We discuss the phase diagram of the random Zq models in two dimensions. It is argued that, when q is large enough, there exist three phases in the phase diagram with two axes being the temperature and the strength of randomness. Our conlusions are derived based on the application of the duality arguments for random systems, which have been formulated recently by Maillard et al.
Simulation of subgrid orographic precipitation with an embedded 2-D cloud-resolving model
NASA Astrophysics Data System (ADS)
Jung, Joon-Hee; Arakawa, Akio
2016-03-01
By explicitly resolving cloud-scale processes with embedded two-dimensional (2-D) cloud-resolving models (CRMs), superparameterized global atmospheric models have successfully simulated various atmospheric events over a wide range of time scales. Up to now, however, such models have not included the effects of topography on the CRM grid scale. We have used both 3-D and 2-D CRMs to simulate the effects of topography with prescribed "large-scale" winds. The 3-D CRM is used as a benchmark. The results show that the mean precipitation can be simulated reasonably well by using a 2-D representation of topography as long as the statistics of the topography such as the mean and standard deviation are closely represented. It is also shown that the use of a set of two perpendicular 2-D grids can significantly reduce the error due to a 2-D representation of topography.
Analytic Differentiation of Barlat's 2D Criteria for Inverse Modeling
Endelt, Benny; Nielsen, Karl Brian; Danckert, Joachim
2005-08-05
The demand for alternative identification schemes for identification of constitutive parameters is getting more pronounced as the complexity of the constitutive equations increases, i.e. the number of parameters subject to identification. A general framework for inverse identification of constitutive parameters associated with sheet metal forming is proposed in the article. The inverse problem is solved, through minimization of the least square error between an experimental punch force sampled from a deep drawing and a predicted punch force produced from a coherent finite element model.
Google Earth as a tool in 2-D hydrodynamic modeling
NASA Astrophysics Data System (ADS)
Chien, Nguyen Quang; Keat Tan, Soon
2011-01-01
A method for coupling virtual globes with geophysical hydrodynamic models is presented. Virtual globes such as Google TM Earth can be used as a visualization tool to help users create and enter input data. The authors discuss techniques for representing linear and areal geographical objects with KML (Keyhole Markup Language) files generated using computer codes (scripts). Although virtual globes offer very limited tools for data input, some data of categorical or vector type can be entered by users, and then transformed into inputs for the hydrodynamic program by using appropriate scripts. An application with the AnuGA hydrodynamic model was used as an illustration of the method. Firstly, users draw polygons on the Google Earth screen. These features are then saved in a KML file which is read using a script file written in the Lua programming language. After the hydrodynamic simulation has been performed, another script file is used to convert the resulting output text file to a KML file for visualization, where the depths of inundation are represented by the color of discrete point icons. The visualization of a wind speed vector field was also included as a supplementary example.
Conservation laws and LETKF with 2D Shallow Water Model
NASA Astrophysics Data System (ADS)
Zeng, Yuefei; Janjic, Tijana
2016-04-01
Numerous approaches have been proposed to maintain physical conservation laws in the numerical weather prediction models. However, to achieve a reliable prediction, adequate initial conditions are also necessary, which are produced by a data assimilation algorithm. If an ensemble Kalman filters (EnKF) is used for this purpose, it has been shown that it could yield unphysical analysis ensemble that for example violates principles of mass conservation and positivity preservation (e.g. Janjic et al 2014) . In this presentation, we discuss the selection of conservation criteria for the analysis step, and start with testing the conservation of mass, energy and enstrophy. The simple experiments deal with nonlinear shallow water equations and simulated observations that are assimilated with LETKF (Localized Ensemble Transform Kalman Filter, Hunt et al. 2007). The model is discretized in a specific way to conserve mass, angular momentum, energy and enstrophy. The effects of the data assimilation on the conserved quantities (of mass, energy and enstrophy) depend on observation covarage, localization radius, observed variable and observation operator. Having in mind that Arakawa (1966) and Arakawa and Lamb (1977) showed that the conservation of both kinetic energy and enstrophy by momentum advection schemes in the case of nondivergent flow prevents systematic and unrealistic energy cascade towards high wave numbers, a cause of excessive numerical noise and possible eventual nonlinear instability, we test the effects on prediction depending on the type of errors in the initial condition. The performance with respect to nonlinear energy cascade is assessed as well.
A 2D model to design MHD induction pumps
NASA Astrophysics Data System (ADS)
Stieglitz, R.; Zeininger, J.
2006-09-01
Technical liquid metal systems accompanied by a thermal transfer of energy such as reactor systems, metallurgical processes, metal refinement, casting, etc., require a forced convection of the fluid. The increased temperatures and more often the environmental conditions as, e.g., in a nuclear environment, pumping principles are required, in which rotating parts are absent. Additionally, in many applications a controlled atmosphere is indispensable, in order to ensure the structural integrity of the duct walls. An interesting option to overcome the sealing problem of a mechanical pump towards the surrounding is offered by induction systems. Although their efficiency compared to that of turbo machines is quite low, they have several advantages, which are attractive to the specific requirements in liquid metal applications such as: - low maintenance costs due to the absence of sealings, bearings and moving parts; - low degradation rate of the structural material; - simple replacement of the inductor without cut of the piping system; - fine regulation of flow rate by different inductor connections; - change of pump characteristics without change of the mechanical set-up. Within the article, general design requirements of electromagnetic pumps (EMP) are elaborated. The design of two annular linear induction pumps operating with sodium and lead-bismuth are presented and the calculated pump characteristics and experimentally obtained data are compared. In this context, physical effects leading to deviations between the model and the real data are addressed. Finally, the main results are summarized. Tables 4, Figs 4, Refs 12.
Bond Order Correlations in the 2D Hubbard Model
NASA Astrophysics Data System (ADS)
Moore, Conrad; Abu Asal, Sameer; Yang, Shuxiang; Moreno, Juana; Jarrell, Mark
We use the dynamical cluster approximation to study the bond correlations in the Hubbard model with next nearest neighbor (nnn) hopping to explore the region of the phase diagram where the Fermi liquid phase is separated from the pseudogap phase by the Lifshitz line at zero temperature. We implement the Hirsch-Fye cluster solver that has the advantage of providing direct access to the computation of the bond operators via the decoupling field. In the pseudogap phase, the parallel bond order susceptibility is shown to persist at zero temperature while it vanishes for the Fermi liquid phase which allows the shape of the Lifshitz line to be mapped as a function of filling and nnn hopping. Our cluster solver implements NVIDIA's CUDA language to accelerate the linear algebra of the Quantum Monte Carlo to help alleviate the sign problem by allowing for more Monte Carlo updates to be performed in a reasonable amount of computation time. Work supported by the NSF EPSCoR Cooperative Agreement No. EPS-1003897 with additional support from the Louisiana Board of Regents.
GEO2D - Two-Dimensional Computer Model of a Ground Source Heat Pump System
James Menart
2013-06-07
This file contains a zipped file that contains many files required to run GEO2D. GEO2D is a computer code for simulating ground source heat pump (GSHP) systems in two-dimensions. GEO2D performs a detailed finite difference simulation of the heat transfer occurring within the working fluid, the tube wall, the grout, and the ground. Both horizontal and vertical wells can be simulated with this program, but it should be noted that the vertical wall is modeled as a single tube. This program also models the heat pump in conjunction with the heat transfer occurring. GEO2D simulates the heat pump and ground loop as a system. Many results are produced by GEO2D as a function of time and position, such as heat transfer rates, temperatures and heat pump performance. On top of this information from an economic comparison between the geothermal system simulated and a comparable air heat pump systems or a comparable gas, oil or propane heating systems with a vapor compression air conditioner. The version of GEO2D in the attached file has been coupled to the DOE heating and cooling load software called ENERGYPLUS. This is a great convenience for the user because heating and cooling loads are an input to GEO2D. GEO2D is a user friendly program that uses a graphical user interface for inputs and outputs. These make entering data simple and they produce many plotted results that are easy to understand. In order to run GEO2D access to MATLAB is required. If this program is not available on your computer you can download the program MCRInstaller.exe, the 64 bit version, from the MATLAB website or from this geothermal depository. This is a free download which will enable you to run GEO2D..
Comparison of 1D and 2D modelling with soil erosion model SMODERP
NASA Astrophysics Data System (ADS)
Kavka, Petr; Weyskrabova, Lenka; Zajicek, Jan
2013-04-01
The contribution presents a comparison of a runoff simulated by profile method (1D) and spatially distributed method (2D). Simulation model SMODERP is used for calculation and prediction of soil erosion and surface runoff from agricultural land. SMODERP is physically based model that includes the processes of infiltration (Phillips equation), surface runoff (kinematic wave based equation), surface retention, surface roughness and vegetation impact on runoff. 1D model was developed in past, new 2D model was developed in last two years. The model is being developed at the Department of Irrigation, Drainage and Landscape Engineering, Civil Engineering Faculty, CTU in Prague. 2D model was developed as a tool for widespread GIS software ArcGIS. The physical relations were implemented through Python script. This script uses ArcGIS system tools for raster and vectors treatment of the inputs. Flow direction is calculated by Steepest Descent algorithm in the preliminary version of 2D model. More advanced multiple flow algorithm is planned in the next version. Spatially distributed models enable to estimate not only surface runoff but also flow in the rills. Surface runoff is described in the model by kinematic wave equation. Equation uses Manning roughness coefficient for surface runoff. Parameters for five different soil textures were calibrated on the set of forty measurements performed on the laboratory rainfall simulator. For modelling of the rills a specific sub model was created. This sub model uses Manning formula for flow estimation. Numerical stability of the model is solved by Courant criterion. Spatial scale is fixed. Time step is dynamically changed depending on how flow is generated and developed. SMODERP is meant to be used not only for the research purposes, but mainly for the engineering practice. We also present how the input data can be obtained based on available resources (soil maps and data, land use, terrain models, field research, etc.) and how can
NASA Astrophysics Data System (ADS)
Komura, Yukihiro; Okabe, Yutaka
2016-03-01
We present new versions of sample CUDA programs for the GPU computing of the Swendsen-Wang multi-cluster spin flip algorithm. In this update, we add the method of GPU-based cluster-labeling algorithm without the use of conventional iteration (Komura, 2015) to those programs. For high-precision calculations, we also add a random-number generator in the cuRAND library. Moreover, we fix several bugs and remove the extra usage of shared memory in the kernel functions.
Analysis of vegetation effect on waves using a vertical 2-D RANS model
Technology Transfer Automated Retrieval System (TEKTRAN)
A vertical two-dimensional (2-D) model has been applied in the simulation of wave propagation through vegetated water bodies. The model is based on an existing model SOLA-VOF which solves the Reynolds-Averaged Navier-Stokes (RANS) equations with the finite difference method on a staggered rectangula...
Simulation of Cardiac Arrhythmias Using a 2D Heterogeneous Whole Heart Model
Balakrishnan, Minimol; Chakravarthy, V. Srinivasa; Guhathakurta, Soma
2015-01-01
Simulation studies of cardiac arrhythmias at the whole heart level with electrocardiogram (ECG) gives an understanding of how the underlying cell and tissue level changes manifest as rhythm disturbances in the ECG. We present a 2D whole heart model (WHM2D) which can accommodate variations at the cellular level and can generate the ECG waveform. It is shown that, by varying cellular-level parameters like the gap junction conductance (GJC), excitability, action potential duration (APD) and frequency of oscillations of the auto-rhythmic cell in WHM2D a large variety of cardiac arrhythmias can be generated including sinus tachycardia, sinus bradycardia, sinus arrhythmia, sinus pause, junctional rhythm, Wolf Parkinson White syndrome and all types of AV conduction blocks. WHM2D includes key components of the electrical conduction system of the heart like the SA (Sino atrial) node cells, fast conducting intranodal pathways, slow conducting atriovenctricular (AV) node, bundle of His cells, Purkinje network, atrial, and ventricular myocardial cells. SA nodal cells, AV nodal cells, bundle of His cells, and Purkinje cells are represented by the Fitzhugh-Nagumo (FN) model which is a reduced model of the Hodgkin-Huxley neuron model. The atrial and ventricular myocardial cells are modeled by the Aliev-Panfilov (AP) two-variable model proposed for cardiac excitation. WHM2D can prove to be a valuable clinical tool for understanding cardiac arrhythmias. PMID:26733873
Fast 2D flood modelling using GPU technology - recent applications and new developments
NASA Astrophysics Data System (ADS)
Crossley, Amanda; Lamb, Rob; Waller, Simon; Dunning, Paul
2010-05-01
In recent years there has been considerable interest amongst scientists and engineers in exploiting the potential of commodity graphics hardware for desktop parallel computing. The Graphics Processing Units (GPUs) that are used in PC graphics cards have now evolved into powerful parallel co-processors that can be used to accelerate the numerical codes used for floodplain inundation modelling. We report in this paper on experience over the past two years in developing and applying two dimensional (2D) flood inundation models using GPUs to achieve significant practical performance benefits. Starting with a solution scheme for the 2D diffusion wave approximation to the 2D Shallow Water Equations (SWEs), we have demonstrated the capability to reduce model run times in ‘real-world' applications using GPU hardware and programming techniques. We then present results from a GPU-based 2D finite volume SWE solver. A series of numerical test cases demonstrate that the model produces outputs that are accurate and consistent with reference results published elsewhere. In comparisons conducted for a real world test case, the GPU-based SWE model was over 100 times faster than the CPU version. We conclude with some discussion of practical experience in using the GPU technology for flood mapping applications, and for research projects investigating use of Monte Carlo simulation methods for the analysis of uncertainty in 2D flood modelling.
Simulation of Cardiac Arrhythmias Using a 2D Heterogeneous Whole Heart Model.
Balakrishnan, Minimol; Chakravarthy, V Srinivasa; Guhathakurta, Soma
2015-01-01
Simulation studies of cardiac arrhythmias at the whole heart level with electrocardiogram (ECG) gives an understanding of how the underlying cell and tissue level changes manifest as rhythm disturbances in the ECG. We present a 2D whole heart model (WHM2D) which can accommodate variations at the cellular level and can generate the ECG waveform. It is shown that, by varying cellular-level parameters like the gap junction conductance (GJC), excitability, action potential duration (APD) and frequency of oscillations of the auto-rhythmic cell in WHM2D a large variety of cardiac arrhythmias can be generated including sinus tachycardia, sinus bradycardia, sinus arrhythmia, sinus pause, junctional rhythm, Wolf Parkinson White syndrome and all types of AV conduction blocks. WHM2D includes key components of the electrical conduction system of the heart like the SA (Sino atrial) node cells, fast conducting intranodal pathways, slow conducting atriovenctricular (AV) node, bundle of His cells, Purkinje network, atrial, and ventricular myocardial cells. SA nodal cells, AV nodal cells, bundle of His cells, and Purkinje cells are represented by the Fitzhugh-Nagumo (FN) model which is a reduced model of the Hodgkin-Huxley neuron model. The atrial and ventricular myocardial cells are modeled by the Aliev-Panfilov (AP) two-variable model proposed for cardiac excitation. WHM2D can prove to be a valuable clinical tool for understanding cardiac arrhythmias. PMID:26733873
2D face database diversification based on 3D face modeling
NASA Astrophysics Data System (ADS)
Wang, Qun; Li, Jiang; Asari, Vijayan K.; Karim, Mohammad A.
2011-05-01
Pose and illumination are identified as major problems in 2D face recognition (FR). It has been theoretically proven that the more diversified instances in the training phase, the more accurate and adaptable the FR system appears to be. Based on this common awareness, researchers have developed a large number of photographic face databases to meet the demand for data training purposes. In this paper, we propose a novel scheme for 2D face database diversification based on 3D face modeling and computer graphics techniques, which supplies augmented variances of pose and illumination. Based on the existing samples from identical individuals of the database, a synthesized 3D face model is employed to create composited 2D scenarios with extra light and pose variations. The new model is based on a 3D Morphable Model (3DMM) and genetic type of optimization algorithm. The experimental results show that the complemented instances obviously increase diversification of the existing database.
A multispeed Discrete Boltzmann Model for transcritical 2D shallow water flows
NASA Astrophysics Data System (ADS)
La Rocca, Michele; Montessori, Andrea; Prestininzi, Pietro; Succi, Sauro
2015-03-01
In this work a Discrete Boltzmann Model for the solution of transcritical 2D shallow water flows is presented and validated. In order to provide the model with transcritical capabilities, a particular multispeed velocity set has been employed for the discretization of the Boltzmann equation. It is shown that this particular set naturally yields a simple and closed procedure to determine higher order equilibrium distribution functions needed to simulate transcritical flow. The model is validated through several classical benchmarks and is proven to correctly and accurately simulate both 1D and 2D transitions between the two flow regimes.
A 2-D dynamical model of mesospheric temperature inversions in winter
Hauchecorne, A.; Maillard, A. )
1990-11-01
A 2-D stratospheric and mesospheric dynamical model including drag and diffusion due to gravity wave breaking is used to simulate winter mesospheric temperature inversions similar to those observed by Rayleigh lidar. It is shown that adiabatic heating associated to descending velocities in the mesosphere is the main mechanism involved in the formation of such inversions. Sensitivity tests are performed with the model and confirm this assumption. It is also explained why other previous similar studies with 2-D models did not show mesospheric inversion layers.
Merging of RVR meander with CONCEPTS: Simplified 2D model for long-term meander evolution
Technology Transfer Automated Retrieval System (TEKTRAN)
RVR Meander is a simplified two-dimensional (2D) hydrodynamic and migration model (Abad and Garcia, 2006) while CONCEPTS (CONservational Channel Evolution and Pollutant Transport System) is a one-dimensional (1D) hydrodynamic and morphodynamic model (Langendoen and Alonso, 2008; Langendoen and Simon...
Introducing the R2D2 Model: Online Learning for the Diverse Learners of This World
ERIC Educational Resources Information Center
Bonk, Curtis J.; Zhang, Ke
2006-01-01
The R2D2 method--read, reflect, display, and do--is a new model for designing and delivering distance education, and in particular, online learning. Such a model is especially important to address the diverse preferences of online learners of varied generations and varied Internet familiarity. Four quadrants can be utilized separately or as part…
Evaluation of 2D shallow-water model for spillway flow with a complex geometry
Technology Transfer Automated Retrieval System (TEKTRAN)
Although the two-dimensional (2D) shallow water model is formulated based on several assumptions such as hydrostatic pressure distribution and vertical velocity is negligible, as a simple alternative to the complex 3D model, it has been used to compute water flows in which these assumptions may be ...
Knight shift and spin relaxation in the single band 2D Hubbard model
NASA Astrophysics Data System (ADS)
Leblanc, James; Chen, Xi; Gull, Emanuel
We study in detail the roles of spin and charge fluctuations in the single band 2D Hubbard model. Using dynamical mean field theory and cluster extensions such as the dynamical cluster approximation (DCA), we compute the full two particle susceptibilities in the spin and charge representations. By performing analytic continuations we obtain the temperature and doping dependence of the spin-lattice relaxation (T1- 1) and knight shift in the 2D Hubbard model relevant to NMR results on doped cuprates and connect these to RPA results in weak coupling limits.
NASA Astrophysics Data System (ADS)
Pasternack, Gregory B.; Gilbert, Andrew T.; Wheaton, Joseph M.; Buckland, Evan M.
2006-08-01
SummaryResource managers, scientists, government regulators, and stakeholders are considering sophisticated numerical models for managing complex environmental problems. In this study, observations from a river-rehabilitation experiment involving gravel augmentation and spawning habitat enhancement were used to assess sources and magnitudes of error in depth, velocity, and shear velocity predictions made at the 1-m scale with a commercial two-dimensional (depth-averaged) model. Error in 2D model depth prediction averaged 21%. This error was attributable to topographic survey resolution, which at 1 pt per 1.14 m 2, was inadequate to resolve small humps and depressions influencing point measurements. Error in 2D model velocity prediction averaged 29%. More than half of this error was attributable to depth prediction error. Despite depth and velocity error, 56% of tested 2D model predictions of shear velocity were within the 95% confidence limit of the best field-based estimation method. Ninety percent of the error in shear velocity prediction was explained by velocity prediction error. Multiple field-based estimates of shear velocity differed by up to 160%, so the lower error for the 2D model's predictions suggests such models are at least as accurate as field measurement. 2D models enable detailed, spatially distributed estimates compared to the small number measurable in a field campaign of comparable cost. They also can be used for design evaluation. Although such numerical models are limited to channel types adhering to model assumptions and yield predictions only accurate to ˜20-30%, they can provide a useful tool for river-rehabilitation design and assessment, including spatially diverse habitat heterogeneity as well as for pre- and post-project appraisal.
Validation of DYSTOOL for unsteady aerodynamic modeling of 2D airfoils
NASA Astrophysics Data System (ADS)
González, A.; Gomez-Iradi, S.; Munduate, X.
2014-06-01
From the point of view of wind turbine modeling, an important group of tools is based on blade element momentum (BEM) theory using 2D aerodynamic calculations on the blade elements. Due to the importance of this sectional computation of the blades, the National Renewable Wind Energy Center of Spain (CENER) developed DYSTOOL, an aerodynamic code for 2D airfoil modeling based on the Beddoes-Leishman model. The main focus here is related to the model parameters, whose values depend on the airfoil or the operating conditions. In this work, the values of the parameters are adjusted using available experimental or CFD data. The present document is mainly related to the validation of the results of DYSTOOL for 2D airfoils. The results of the computations have been compared with unsteady experimental data of the S809 and NACA0015 profiles. Some of the cases have also been modeled using the CFD code WMB (Wind Multi Block), within the framework of a collaboration with ACCIONA Windpower. The validation has been performed using pitch oscillations with different reduced frequencies, Reynolds numbers, amplitudes and mean angles of attack. The results have shown a good agreement using the methodology of adjustment for the value of the parameters. DYSTOOL have demonstrated to be a promising tool for 2D airfoil unsteady aerodynamic modeling.
2D-photochemical model for forbidden oxygen line emission for comet 1P/Halley
NASA Astrophysics Data System (ADS)
Cessateur, G.; De Keyser, J.; Maggiolo, R.; Rubin, M.; Gronoff, G.; Gibbons, A.; Jehin, E.; Dhooghe, F.; Gunell, H.; Vaeck, N.; Loreau, J.
2016-08-01
We present here a 2D-model of photochemistry for computing the production and loss mechanisms of the O(1S) and O(1D) states, which are responsible for the emission lines at 577.7 nm, 630 nm, and 636.4 nm, in case of the comet 1P/Halley. The presence of O2 within cometary atmospheres, measured by the in-situ ROSETTA and GIOTTO missions, necessitates a revision of the usual photochemical models. Indeed, the photodissociation of molecular oxygen also leads to a significant production of oxygen in excited electronic states. In order to correctly model the solar UV flux absorption, we consider here a 2D configuration. While the green to red-doublet ratio is not affected by the solar UV flux absorption, estimates of the red-doublet and green lines emissions are, however, overestimated by a factor of two in the 1D model compared to the 2D model. Considering a spherical symmetry, emission maps can be deduced from the 2D model in order to be directly compared to ground and/or in-situ observations.
Oriented Gaussian mixture models for nonrigid 2D/3D coronary artery registration.
Baka, N; Metz, C T; Schultz, C J; van Geuns, R-J; Niessen, W J; van Walsum, T
2014-05-01
2D/3D registration of patient vasculature from preinterventional computed tomography angiography (CTA) to interventional X-ray angiography is of interest to improve guidance in percutaneous coronary interventions. In this paper we present a novel feature based 2D/3D registration framework, that is based on probabilistic point correspondences, and show its usefulness on aligning 3D coronary artery centerlines derived from CTA images with their 2D projection derived from interventional X-ray angiography. The registration framework is an extension of the Gaussian mixture model (GMM) based point-set registration to the 2D/3D setting, with a modified distance metric. We also propose a way to incorporate orientation in the registration, and show its added value for artery registration on patient datasets as well as in simulation experiments. The oriented GMM registration achieved a median accuracy of 1.06 mm, with a convergence rate of 81% for nonrigid vessel centerline registration on 12 patient datasets, using a statistical shape model. The method thereby outperformed the iterative closest point algorithm, the GMM registration without orientation, and two recently published methods on 2D/3D coronary artery registration. PMID:24770908
The simulation of 3D mass models in 2D digital mammography and breast tomosynthesis
Shaheen, Eman De Keyzer, Frederik; Bosmans, Hilde; Ongeval, Chantal Van; Dance, David R.; Young, Kenneth C.
2014-08-15
Purpose: This work proposes a new method of building 3D breast mass models with different morphological shapes and describes the validation of the realism of their appearance after simulation into 2D digital mammograms and breast tomosynthesis images. Methods: Twenty-five contrast enhanced MRI breast lesions were collected and each mass was manually segmented in the three orthogonal views: sagittal, coronal, and transversal. The segmented models were combined, resampled to have isotropic voxel sizes, triangularly meshed, and scaled to different sizes. These masses were referred to as nonspiculated masses and were then used as nuclei onto which spicules were grown with an iterative branching algorithm forming a total of 30 spiculated masses. These 55 mass models were projected into 2D projection images to obtain mammograms after image processing and into tomographic sequences of projection images, which were then reconstructed to form 3D tomosynthesis datasets. The realism of the appearance of these mass models was assessed by five radiologists via receiver operating characteristic (ROC) analysis when compared to 54 real masses. All lesions were also given a breast imaging reporting and data system (BIRADS) score. The data sets of 2D mammography and tomosynthesis were read separately. The Kendall's coefficient of concordance was used for the interrater observer agreement assessment for the BIRADS scores per modality. Further paired analysis, using the Wilcoxon signed rank test, of the BIRADS assessment between 2D and tomosynthesis was separately performed for the real masses and for the simulated masses. Results: The area under the ROC curves, averaged over all observers, was 0.54 (95% confidence interval [0.50, 0.66]) for the 2D study, and 0.67 (95% confidence interval [0.55, 0.79]) for the tomosynthesis study. According to the BIRADS scores, the nonspiculated and the spiculated masses varied in their degrees of malignancy from normal (BIRADS 1) to highly
Impact of high speed civil transports on stratospheric ozone: A 2-D model investigation
Kinnison, D.E.; Connell, P.S.
1996-12-01
This study investigates the effect on stratospheric ozone from a fleet of proposed High Speed Civil Transports (HSCTs). The new LLNL 2-D operator-split chemical-radiative-transport model of the troposphere and stratosphere is used for this HSCT investigation. This model is integrated in a diurnal manner, using an implicit numerical solver. Therefore, rate coefficients are not modified by any sort of diurnal average factor. This model also does not make any assumptions on lumping of chemical species into families. Comparisons to previous model-derived HSCT assessment of ozone change are made, both to the previous LLNL 2-D model and to other models from the international assessment modeling community. The sensitivity to the NO{sub x} emission index and sulfate surface area density is also explored.
Extension and application of the Preissmann slot model to 2D transient mixed flows
NASA Astrophysics Data System (ADS)
Maranzoni, Andrea; Dazzi, Susanna; Aureli, Francesca; Mignosa, Paolo
2015-08-01
This paper presents an extension of the Preissmann slot concept for the modeling of highly transient two-dimensional (2D) mixed flows. The classic conservative formulation of the 2D shallow water equations for free surface flows is adapted by assuming that two fictitious vertical slots, aligned along the two Cartesian plane directions and normally intersecting, are added on the ceiling of each integration element. Accordingly, transitions between free surface and pressurized flow can be handled in a natural and straightforward way by using the same set of governing equations. The opportunity of coupling free surface and pressurized flows is actually useful not only in one-dimensional (1D) problems concerning sewer systems but also for modeling 2D flooding phenomena in which the pressurization of bridges, culverts, or other crossing hydraulic structures can be expected. Numerical simulations are performed by using a shock-capturing MUSCL-Hancock finite volume scheme combined with the FORCE (First-Order Centred) solver for the evaluation of the numerical fluxes. The validation of the mathematical model is accomplished on the basis of both exact solutions of 1D discontinuous initial value problems and reference radial solutions of idealized test cases with cylindrical symmetry. Furthermore, the capability of the model to deal with practical field-scale applications is assessed by simulating the transit of a bore under an arch bridge. Numerical results show that the proposed model is suitable for the prediction of highly transient 2D mixed flows.
Comparison of 3-D finite element model of ashlar masonry with 2-D numerical models of ashlar masonry
NASA Astrophysics Data System (ADS)
Beran, Pavel
2016-06-01
3-D state of stress in heterogeneous ashlar masonry can be also computed by several suitable chosen 2-D numerical models of ashlar masonry. The results obtained from 2-D numerical models well correspond to the results obtained from 3-D numerical model. The character of thermal stress is the same. While using 2-D models the computational time is reduced more than hundredfold and therefore this method could be used for computation of thermal stresses during long time periods with 10 000 of steps.
2D-Raman-THz spectroscopy: A sensitive test of polarizable water models
NASA Astrophysics Data System (ADS)
Hamm, Peter
2014-11-01
In a recent paper, the experimental 2D-Raman-THz response of liquid water at ambient conditions has been presented [J. Savolainen, S. Ahmed, and P. Hamm, Proc. Natl. Acad. Sci. U. S. A. 110, 20402 (2013)]. Here, all-atom molecular dynamics simulations are performed with the goal to reproduce the experimental results. To that end, the molecular response functions are calculated in a first step, and are then convoluted with the laser pulses in order to enable a direct comparison with the experimental results. The molecular dynamics simulation are performed with several different water models: TIP4P/2005, SWM4-NDP, and TL4P. As polarizability is essential to describe the 2D-Raman-THz response, the TIP4P/2005 water molecules are amended with either an isotropic or a anisotropic polarizability a posteriori after the molecular dynamics simulation. In contrast, SWM4-NDP and TL4P are intrinsically polarizable, and hence the 2D-Raman-THz response can be calculated in a self-consistent way, using the same force field as during the molecular dynamics simulation. It is found that the 2D-Raman-THz response depends extremely sensitively on details of the water model, and in particular on details of the description of polarizability. Despite the limited time resolution of the experiment, it could easily distinguish between various water models. Albeit not perfect, the overall best agreement with the experimental data is obtained for the TL4P water model.
Parallelized CCHE2D flow model with CUDA Fortran on Graphics Process Units
Technology Transfer Automated Retrieval System (TEKTRAN)
This paper presents the CCHE2D implicit flow model parallelized using CUDA Fortran programming technique on Graphics Processing Units (GPUs). A parallelized implicit Alternating Direction Implicit (ADI) solver using Parallel Cyclic Reduction (PCR) algorithm on GPU is developed and tested. This solve...
ERIC Educational Resources Information Center
Park, Elisa L.
2009-01-01
The purpose of this study is to understand the dynamics of Korean students' international mobility to study abroad by using the 2-D Model. The first D, "the driving force factor," explains how and what components of the dissatisfaction with domestic higher education perceived by Korean students drives students' outward mobility to seek foreign…
2D-Raman-THz spectroscopy: A sensitive test of polarizable water models
Hamm, Peter
2014-11-14
In a recent paper, the experimental 2D-Raman-THz response of liquid water at ambient conditions has been presented [J. Savolainen, S. Ahmed, and P. Hamm, Proc. Natl. Acad. Sci. U. S. A. 110, 20402 (2013)]. Here, all-atom molecular dynamics simulations are performed with the goal to reproduce the experimental results. To that end, the molecular response functions are calculated in a first step, and are then convoluted with the laser pulses in order to enable a direct comparison with the experimental results. The molecular dynamics simulation are performed with several different water models: TIP4P/2005, SWM4-NDP, and TL4P. As polarizability is essential to describe the 2D-Raman-THz response, the TIP4P/2005 water molecules are amended with either an isotropic or a anisotropic polarizability a posteriori after the molecular dynamics simulation. In contrast, SWM4-NDP and TL4P are intrinsically polarizable, and hence the 2D-Raman-THz response can be calculated in a self-consistent way, using the same force field as during the molecular dynamics simulation. It is found that the 2D-Raman-THz response depends extremely sensitively on details of the water model, and in particular on details of the description of polarizability. Despite the limited time resolution of the experiment, it could easily distinguish between various water models. Albeit not perfect, the overall best agreement with the experimental data is obtained for the TL4P water model.
Justification for a 2D versus 3D fingertip finite element model during static contact simulations.
Harih, Gregor; Tada, Mitsunori; Dolšak, Bojan
2016-10-01
The biomechanical response of a human hand during contact with various products has not been investigated in details yet. It has been shown that excessive contact pressure on the soft tissue can result in discomfort, pain and also cumulative traumatic disorders. This manuscript explores the benefits and limitations of a simplified two-dimensional vs. an anatomically correct three-dimensional finite element model of a human fingertip. Most authors still use 2D FE fingertip models due to their simplicity and reduced computational costs. However we show that an anatomically correct 3D FE fingertip model can provide additional insight into the biomechanical behaviour. The use of 2D fingertip FE models is justified when observing peak contact pressure values as well as displacement during the contact for the given studied cross-section. On the other hand, an anatomically correct 3D FE fingertip model provides a contact pressure distribution, which reflects the fingertip's anatomy. PMID:26856769
Molecular Dynamics implementation of BN2D or 'Mercedes Benz' water model
NASA Astrophysics Data System (ADS)
Scukins, Arturs; Bardik, Vitaliy; Pavlov, Evgen; Nerukh, Dmitry
2015-05-01
Two-dimensional 'Mercedes Benz' (MB) or BN2D water model (Naim, 1971) is implemented in Molecular Dynamics. It is known that the MB model can capture abnormal properties of real water (high heat capacity, minima of pressure and isothermal compressibility, negative thermal expansion coefficient) (Silverstein et al., 1998). In this work formulas for calculating the thermodynamic, structural and dynamic properties in microcanonical (NVE) and isothermal-isobaric (NPT) ensembles for the model from Molecular Dynamics simulation are derived and verified against known Monte Carlo results. The convergence of the thermodynamic properties and the system's numerical stability are investigated. The results qualitatively reproduce the peculiarities of real water making the model a visually convenient tool that also requires less computational resources, thus allowing simulations of large (hydrodynamic scale) molecular systems. We provide the open source code written in C/C++ for the BN2D water model implementation using Molecular Dynamics.
MODELING THE TRANSVERSE THERMAL CONDUCTIVITY OF 2-D SICF/SIC COMPOSITES MADE WITH WOVEN FABRIC
Youngblood, Gerald E; Senor, David J; Jones, Russell H
2004-06-01
The hierarchical two-layer (H2L) model describes the effective transverse thermal conductivity (Keff) of a 2D-SiCf/SiC composite plate made from stacked and infiltrated woven fabric layers in terms of constituent properties and microstructural and architectural variables. The H2L model includes the effects of fiber-matrix interfacial conductance, high fiber packing fractions within individual tows and the non-uniform nature of 2D fabric/matrix layers that usually include a significant amount of interlayer porosity. Previously, H2L model Keff-predictions were compared to measured values for two versions of 2D Hi-Nicalon/PyC/ICVI-SiC composite, one with a “thin” (0.11m) and the other with a “thick” (1.04m) pyrocarbon (PyC) fiber coating, and for a 2D Tyranno SA/”thin” PyC/FCVI-SIC composite. In this study, H2L model Keff-predictions were compared to measured values for a 2D-SiCf/SiC composite made using the ICVI-process with Hi-Nicalon type S fabric and a “thin” PyC fiber coating. The values of Keff determined for the latter composite were significantly greater than the Keff-values determined for the composites made with either the Hi-Nicalon or the Tyranno SA fabrics. Differences in Keff-values were expected for the different fiber types, but major differences also were due to observed microstructural and architectural variations between the composite systems, and as predicted by the H2L model.
The 2dF Galaxy Redshift Survey: voids and hierarchical scaling models
NASA Astrophysics Data System (ADS)
Croton, Darren J.; Colless, Matthew; Gaztañaga, Enrique; Baugh, Carlton M.; Norberg, Peder; Baldry, I. K.; Bland-Hawthorn, J.; Bridges, T.; Cannon, R.; Cole, S.; Collins, C.; Couch, W.; Dalton, G.; de Propris, R.; Driver, S. P.; Efstathiou, G.; Ellis, R. S.; Frenk, C. S.; Glazebrook, K.; Jackson, C.; Lahav, O.; Lewis, I.; Lumsden, S.; Maddox, S.; Madgwick, D.; Peacock, J. A.; Peterson, B. A.; Sutherland, W.; Taylor, K.
2004-08-01
We measure the redshift-space reduced void probability function (VPF) for 2dFGRS volume-limited galaxy samples covering the absolute magnitude range MbJ-5log10h=-18 to -22. Theoretically, the VPF connects the distribution of voids to the moments of galaxy clustering of all orders, and can be used to discriminate clustering models in the weakly non-linear regime. The reduced VPF measured from the 2dFGRS is in excellent agreement with the paradigm of hierarchical scaling of the galaxy clustering moments. The accuracy of our measurement is such that we can rule out, at a very high significance, popular models for galaxy clustering, including the lognormal distribution. We demonstrate that the negative binomial model gives a very good approximation to the 2dFGRS data over a wide range of scales, out to at least 20 h-1 Mpc. Conversely, the reduced VPF for dark matter in a Λ cold dark matter (ΛCDM) universe does appear to be lognormal on small scales but deviates significantly beyond ~4 h-1 Mpc. We find little dependence of the 2dFGRS reduced VPF on galaxy luminosity. Our results hold independently in both the North and South Galactic Pole survey regions.
Simplified 2D Bidomain Model of Whole Heart Electrical Activity and ECG Generation
NASA Astrophysics Data System (ADS)
Sovilj, Siniša; Magjarević, Ratko; Abed, Amr Al; Lovell, Nigel H.; Dokos, Socrates
2014-06-01
The aim of this study was the development of a geometrically simple and highly computationally-efficient two dimensional (2D) biophysical model of whole heart electrical activity, incorporating spontaneous activation of the sinoatrial node (SAN), the specialized conduction system, and realistic surface ECG morphology computed on the torso. The FitzHugh-Nagumo (FHN) equations were incorporated into a bidomain finite element model of cardiac electrical activity, which was comprised of a simplified geometry of the whole heart with the blood cavities, the lungs and the torso as an extracellular volume conductor. To model the ECG, we placed four electrodes on the surface of the torso to simulate three Einthoven leads VI, VII and VIII from the standard 12-lead system. The 2D model was able to reconstruct ECG morphology on the torso from action potentials generated at various regions of the heart, including the sinoatrial node, atria, atrioventricular node, His bundle, bundle branches, Purkinje fibers, and ventricles. Our 2D cardiac model offers a good compromise between computational load and model complexity, and can be used as a first step towards three dimensional (3D) ECG models with more complex, precise and accurate geometry of anatomical structures, to investigate the effect of various cardiac electrophysiological parameters on ECG morphology.
Approximate analytic solutions to 3D unconfined groundwater flow within regional 2D models
NASA Astrophysics Data System (ADS)
Luther, K.; Haitjema, H. M.
2000-04-01
We present methods for finding approximate analytic solutions to three-dimensional (3D) unconfined steady state groundwater flow near partially penetrating and horizontal wells, and for combining those solutions with regional two-dimensional (2D) models. The 3D solutions use distributed singularities (analytic elements) to enforce boundary conditions on the phreatic surface and seepage faces at vertical wells, and to maintain fixed-head boundary conditions, obtained from the 2D model, at the perimeter of the 3D model. The approximate 3D solutions are analytic (continuous and differentiable) everywhere, including on the phreatic surface itself. While continuity of flow is satisfied exactly in the infinite 3D flow domain, water balance errors can occur across the phreatic surface.
2D and 3D numerical models on compositionally buoyant diapirs in the mantle wedge
NASA Astrophysics Data System (ADS)
Hasenclever, Jörg; Morgan, Jason Phipps; Hort, Matthias; Rüpke, Lars H.
2011-11-01
We present 2D and 3D numerical model calculations that focus on the physics of compositionally buoyant diapirs rising within a mantle wedge corner flow. Compositional buoyancy is assumed to arise from slab dehydration during which water-rich volatiles enter the mantle wedge and form a wet, less dense boundary layer on top of the slab. Slab dehydration is prescribed to occur in the 80-180 km deep slab interval, and the water transport is treated as a diffusion-like process. In this study, the mantle's rheology is modeled as being isoviscous for the benefit of easier-to-interpret feedbacks between water migration and buoyant viscous flow of the mantle. We use a simple subduction geometry that does not change during the numerical calculation. In a large set of 2D calculations we have identified that five different flow regimes can form, in which the position, number, and formation time of the diapirs vary as a function of four parameters: subduction angle, subduction rate, water diffusivity (mobility), and mantle viscosity. Using the same numerical method and numerical resolution we also conducted a suite of 3D calculations for 16 selected parameter combinations. Comparing the 2D and 3D results for the same model parameters reveals that the 2D models can only give limited insights into the inherently 3D problem of mantle wedge diapirism. While often correctly predicting the position and onset time of the first diapir(s), the 2D models fail to capture the dynamics of diapir ascent as well as the formation of secondary diapirs that result from boundary layer perturbations caused by previous diapirs. Of greatest importance for physically correct results is the numerical resolution in the region where diapirs nucleate, which must be high enough to accurately capture the growth of the thin wet boundary layer on top of the slab and, subsequently, the formation, morphology, and ascent of diapirs. Here 2D models can be very useful to quantify the required resolution, which we
TRENT2D WG: a smart web infrastructure for debris-flow modelling and hazard assessment
NASA Astrophysics Data System (ADS)
Zorzi, Nadia; Rosatti, Giorgio; Zugliani, Daniel; Rizzi, Alessandro; Piffer, Stefano
2016-04-01
Mountain regions are naturally exposed to geomorphic flows, which involve large amounts of sediments and induce significant morphological modifications. The physical complexity of this class of phenomena represents a challenging issue for modelling, leading to elaborate theoretical frameworks and sophisticated numerical techniques. In general, geomorphic-flows models proved to be valid tools in hazard assessment and management. However, model complexity seems to represent one of the main obstacles to the diffusion of advanced modelling tools between practitioners and stakeholders, although the UE Flood Directive (2007/60/EC) requires risk management and assessment to be based on "best practices and best available technologies". Furthermore, several cutting-edge models are not particularly user-friendly and multiple stand-alone software are needed to pre- and post-process modelling data. For all these reasons, users often resort to quicker and rougher approaches, leading possibly to unreliable results. Therefore, some effort seems to be necessary to overcome these drawbacks, with the purpose of supporting and encouraging a widespread diffusion of the most reliable, although sophisticated, modelling tools. With this aim, this work presents TRENT2D WG, a new smart modelling solution for the state-of-the-art model TRENT2D (Armanini et al., 2009, Rosatti and Begnudelli, 2013), which simulates debris flows and hyperconcentrated flows adopting a two-phase description over a mobile bed. TRENT2D WG is a web infrastructure joining advantages offered by the software-delivering model SaaS (Software as a Service) and by WebGIS technology and hosting a complete and user-friendly working environment for modelling. In order to develop TRENT2D WG, the model TRENT2D was converted into a service and exposed on a cloud server, transferring computational burdens from the user hardware to a high-performing server and reducing computational time. Then, the system was equipped with an
NASA Technical Reports Server (NTRS)
Gao, Shou-Ting; Ping, Fan; Li, Xiao-Fan; Tao, Wei-Kuo
2004-01-01
Although dry/moist potential vorticity is a useful physical quantity for meteorological analysis, it cannot be applied to the analysis of 2D simulations. A convective vorticity vector (CVV) is introduced in this study to analyze 2D cloud-resolving simulation data associated with 2D tropical convection. The cloud model is forced by the vertical velocity, zonal wind, horizontal advection, and sea surface temperature obtained from the TOGA COARE, and is integrated for a selected 10-day period. The CVV has zonal and vertical components in the 2D x-z frame. Analysis of zonally-averaged and mass-integrated quantities shows that the correlation coefficient between the vertical component of the CVV and the sum of the cloud hydrometeor mixing ratios is 0.81, whereas the correlation coefficient between the zonal component and the sum of the mixing ratios is only 0.18. This indicates that the vertical component of the CVV is closely associated with tropical convection. The tendency equation for the vertical component of the CVV is derived and the zonally-averaged and mass-integrated tendency budgets are analyzed. The tendency of the vertical component of the CVV is determined by the interaction between the vorticity and the zonal gradient of cloud heating. The results demonstrate that the vertical component of the CVV is a cloud-linked parameter and can be used to study tropical convection.
Parameterising root system growth models using 2D neutron radiography images
NASA Astrophysics Data System (ADS)
Schnepf, Andrea; Felderer, Bernd; Vontobel, Peter; Leitner, Daniel
2013-04-01
Root architecture is a key factor for plant acquisition of water and nutrients from soil. In particular in view of a second green revolution where the below ground parts of agricultural crops are important, it is essential to characterise and quantify root architecture and its effect on plant resource acquisition. Mathematical models can help to understand the processes occurring in the soil-plant system, they can be used to quantify the effect of root and rhizosphere traits on resource acquisition and the response to environmental conditions. In order to do so, root architectural models are coupled with a model of water and solute transport in soil. However, dynamic root architectural models are difficult to parameterise. Novel imaging techniques such as x-ray computed tomography, neutron radiography and magnetic resonance imaging enable the in situ visualisation of plant root systems. Therefore, these images facilitate the parameterisation of dynamic root architecture models. These imaging techniques are capable of producing 3D or 2D images. Moreover, 2D images are also available in the form of hand drawings or from images of standard cameras. While full 3D imaging tools are still limited in resolutions, 2D techniques are a more accurate and less expensive option for observing roots in their environment. However, analysis of 2D images has additional difficulties compared to the 3D case, because of overlapping roots. We present a novel algorithm for the parameterisation of root system growth models based on 2D images of root system. The algorithm analyses dynamic image data. These are a series of 2D images of the root system at different points in time. Image data has already been adjusted for missing links and artefacts and segmentation was performed by applying a matched filter response. From this time series of binary 2D images, we parameterise the dynamic root architecture model in the following way: First, a morphological skeleton is derived from the binary
Validation of a 2-D semi-coupled numerical model for fluid-structure-seabed interaction
NASA Astrophysics Data System (ADS)
Ye, Jianhong; Jeng, Dongsheng; Wang, Ren; Zhu, Changqi
2013-10-01
A 2-D semi-coupled model PORO-WSSI 2D (also be referred as FSSI-CAS 2D) for the Fluid-Structure-Seabed Interaction (FSSI) has been developed by employing RANS equations for wave motion in fluid domain, VARANS equations for porous flow in porous structures; and taking the dynamic Biot's equations (known as "u - p" approximation) for soil as the governing equations. The finite difference two-step projection method and the forward time difference method are adopted to solve the RANS, VARANS equations; and the finite element method is adopted to solve the "u - p" approximation. A data exchange port is developed to couple the RANS, VARANS equations and the dynamic Biot's equations together. The analytical solution proposed by Hsu and Jeng (1994) and some experiments conducted in wave flume or geotechnical centrifuge in which various waves involved are used to validate the developed semi-coupled numerical model. The sandy bed involved in these experiments is poro-elastic or poro-elastoplastic. The inclusion of the interaction between fluid, marine structures and poro-elastoplastic seabed foundation is a special point and highlight in this paper, which is essentially different with other previous coupled models The excellent agreement between the numerical results and the experiment data indicates that the developed coupled model is highly reliablefor the FSSI problem.
2D density model of the Chinese continental lithosphere along a NW-SE transect
NASA Astrophysics Data System (ADS)
Šimonová, Barbora; Bielik, Miroslav; Dérerová, Jana
2015-06-01
This paper presents a 2D density model along a transect from NW to SE China. The model was first constructed by the transformation of seismic velocity to density, revealed by previous deep seismic soundings (DSS) investigations in China. Then, the 2D density model was updated using the GM-SYS software by fitting the computed to the observed gravity data. Based on the density distribution of anomalous layers we divided the Chinese continental crust along the transect into three regions: north-western, central and south-eastern. The first one includes the Junggar Basin, Tianshan and Tarim Basin. The second part consists of the Qilian Orogen, the Qaidam Basin and the Songpan Ganzi Basin. The third region is represented by the Yangtze and the Cathaysia blocks. The low velocity body (vp =5.2 - 6.2 km/s) at the junction of the North-western and Central parts at a depth between 21 - 31 km, which was discovered out by DSS, was also confirmed by our 2D density modelling.
A Neural-FEM tool for the 2-D magnetic hysteresis modeling
NASA Astrophysics Data System (ADS)
Cardelli, E.; Faba, A.; Laudani, A.; Lozito, G. M.; Riganti Fulginei, F.; Salvini, A.
2016-04-01
The aim of this work is to present a new tool for the analysis of magnetic field problems considering 2-D magnetic hysteresis. In particular, this tool makes use of the Finite Element Method to solve the magnetic field problem in real device, and fruitfully exploits a neural network (NN) for the modeling of 2-D magnetic hysteresis of materials. The NS has as input the magnetic inductions components B at the k-th simulation step and returns as output the corresponding values of the magnetic field H corresponding to the input pattern. It is trained by vector measurements performed on the magnetic material to be modeled. This input/output scheme is directly implemented in a FEM code employing the magnetic potential vector A formulation. Validations through measurements on a real device have been performed.
TMRPres2D: high quality visual representation of transmembrane protein models.
Spyropoulos, Ioannis C; Liakopoulos, Theodore D; Bagos, Pantelis G; Hamodrakas, Stavros J
2004-11-22
The 'TransMembrane protein Re-Presentation in 2-Dimensions' (TMRPres2D) tool, automates the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins. Protein sequence data and structural information may be acquired from public protein knowledge bases, emanate from prediction algorithms, or even be defined by the user. Several important biological and physical sequence attributes can be embedded in the graphical representation. PMID:15201184
A simple 2-D inundation model for incorporating flood damage in urban drainage planning
NASA Astrophysics Data System (ADS)
Pathirana, A.; Tsegaye, S.; Gersonius, B.; Vairavamoorthy, K.
2008-11-01
In this paper a new inundation model code is developed and coupled with Storm Water Management Model, SWMM, to relate spatial information associated with urban drainage systems as criteria for planning of storm water drainage networks. The prime objective is to achive a model code that is simple and fast enough to be consistently be used in planning stages of urban drainage projects. The formulation for the two-dimensional (2-D) surface flow model algorithms is based on the Navier Stokes equation in two dimensions. An Alternating Direction Implicit (ADI) finite difference numerical scheme is applied to solve the governing equations. This numerical scheme is used to express the partial differential equations with time steps split into two halves. The model algorithm is written using C++ computer programming language. This 2-D surface flow model is then coupled with SWMM for simulation of both pipe flow component and surcharge induced inundation in urban areas. In addition, a damage calculation block is integrated within the inundation model code. The coupled model is shown to be capable of dealing with various flow conditions, as well as being able to simulate wetting and drying processes that will occur as the flood flows over an urban area. It has been applied under idealized and semi-hypothetical cases to determine detailed inundation zones, depths and velocities due to surcharged water on overland surface.
Comparison between 2D and 3D Numerical Modelling of a hot forging simulative test
Croin, M.; Ghiotti, A.; Bruschi, S.
2007-04-07
The paper presents the comparative analysis between 2D and 3D modelling of a simulative experiment, performed in laboratory environment, in which operating conditions approximate hot forging of a turbine aerofoil section. The plane strain deformation was chosen as an ideal case to analyze the process because of the thickness variations in the final section and the consequent distributions of contact pressure and sliding velocity at the interface that are closed to the conditions of the real industrial process. In order to compare the performances of 2D and 3D approaches, two different analyses were performed and compared with the experiments in terms of loads and temperatures peaks at the interface between the dies and the workpiece.
Nested 1D-2D approach for urban surface flood modeling
NASA Astrophysics Data System (ADS)
Murla, Damian; Willems, Patrick
2015-04-01
Floods in urban areas as a consequence of sewer capacity exceedance receive increased attention because of trends in urbanization (increased population density and impermeability of the surface) and climate change. Despite the strong recent developments in numerical modeling of water systems, urban surface flood modeling is still a major challenge. Whereas very advanced and accurate flood modeling systems are in place and operation by many river authorities in support of flood management along rivers, this is not yet the case in urban water management. Reasons include the small scale of the urban inundation processes, the need to have very high resolution topographical information available, and the huge computational demands. Urban drainage related inundation modeling requires a 1D full hydrodynamic model of the sewer network to be coupled with a 2D surface flood model. To reduce the computational times, 0D (flood cones), 1D/quasi-2D surface flood modeling approaches have been developed and applied in some case studies. In this research, a nested 1D/2D hydraulic model has been developed for an urban catchment at the city of Gent (Belgium), linking the underground sewer (minor system) with the overland surface (major system). For the overland surface flood modelling, comparison was made of 0D, 1D/quasi-2D and full 2D approaches. The approaches are advanced by considering nested 1D-2D approaches, including infiltration in the green city areas, and allowing the effects of surface storm water storage to be simulated. An optimal nested combination of three different mesh resolutions was identified; based on a compromise between precision and simulation time for further real-time flood forecasting, warning and control applications. Main streets as mesh zones together with buildings as void regions constitute one of these mesh resolution (3.75m2 - 15m2); they have been included since they channel most of the flood water from the manholes and they improve the accuracy of
Mechanical Modelling of Pultrusion Process: 2D and 3D Numerical Approaches
NASA Astrophysics Data System (ADS)
Baran, Ismet; Hattel, Jesper H.; Akkerman, Remko; Tutum, Cem C.
2015-02-01
The process induced variations such as residual stresses and distortions are a critical issue in pultrusion, since they affect the structural behavior as well as the mechanical properties and geometrical precision of the final product. In order to capture and investigate these variations, a mechanical analysis should be performed. In the present work, the two dimensional (2D) quasi-static plane strain mechanical model for the pultrusion of a thick square profile developed by the authors is further improved using generalized plane strain elements. In addition to that, a more advanced 3D thermo-chemical-mechanical analysis is carried out using 3D quadratic elements which is a novel application for the numerical modelling of the pultrusion process. It is found that the 2D mechanical models give relatively reasonable and accurate stress and displacement evolutions in the transverse direction as compared to the 3D model. Moreover, the generalized plane strain model predicts the longitudinal process induced stresses more similar to the ones calculated in the 3D model as compared with the plane strain model.
Canonical vs. micro-canonical sampling methods in a 2D Ising model
Kepner, J.
1990-12-01
Canonical and micro-canonical Monte Carlo algorithms were implemented on a 2D Ising model. Expressions for the internal energy, U, inverse temperature, Z, and specific heat, C, are given. These quantities were calculated over a range of temperature, lattice sizes, and time steps. Both algorithms accurately simulate the Ising model. To obtain greater than three decimal accuracy from the micro-canonical method requires that the more complicated expression for Z be used. The overall difference between the algorithms is small. The physics of the problem under study should be the deciding factor in determining which algorithm to use. 13 refs., 6 figs., 2 tabs.
Complex zeros of the 2 d Ising model on dynamical random lattices
NASA Astrophysics Data System (ADS)
Ambjørn, J.; Anagnostopoulos, K. N.; Magnea, U.
1998-04-01
We study the zeros in the complex plane of the partition function for the Ising model coupled to 2 d quantum gravity for complex magnetic field and for complex temperature. We compute the zeros by using the exact solution coming from a two matrix model and by Monte Carlo simulations of Ising spins on dynamical triangulations. We present evidence that the zeros form simple one-dimensional patterns in the complex plane, and that the critical behaviour of the system is governed by the scaling of the distribution of singularities near the critical point.
Brane brick models, toric Calabi-Yau 4-folds and 2d (0,2) quivers
NASA Astrophysics Data System (ADS)
Franco, Sebastián; Lee, Sangmin; Seong, Rak-Kyeong
2016-02-01
We introduce brane brick models, a novel type of Type IIA brane configurations consisting of D4-branes ending on an NS5-brane. Brane brick models are T-dual to D1-branes over singular toric Calabi-Yau 4-folds. They fully encode the infinite class of 2 d (generically) {N}=(0,2) gauge theories on the worldvolume of the D1-branes and streamline their connection to the probed geometries. For this purpose, we also introduce new combinatorial procedures for deriving the Calabi-Yau associated to a given gauge theory and vice versa.
2D-3D Registration of CT Vertebra Volume to Fluoroscopy Projection: A Calibration Model Assessment
NASA Astrophysics Data System (ADS)
Bifulco, P.; Cesarelli, M.; Allen, R.; Romano, M.; Fratini, A.; Pasquariello, G.
2009-12-01
This study extends a previous research concerning intervertebral motion registration by means of 2D dynamic fluoroscopy to obtain a more comprehensive 3D description of vertebral kinematics. The problem of estimating the 3D rigid pose of a CT volume of a vertebra from its 2D X-ray fluoroscopy projection is addressed. 2D-3D registration is obtained maximising a measure of similarity between Digitally Reconstructed Radiographs (obtained from the CT volume) and real fluoroscopic projection. X-ray energy correction was performed. To assess the method a calibration model was realised a sheep dry vertebra was rigidly fixed to a frame of reference including metallic markers. Accurate measurement of 3D orientation was obtained via single-camera calibration of the markers and held as true 3D vertebra position; then, vertebra 3D pose was estimated and results compared. Error analysis revealed accuracy of the order of 0.1 degree for the rotation angles of about 1 mm for displacements parallel to the fluoroscopic plane, and of order of 10 mm for the orthogonal displacement.
A 2-D semi-analytical model of double-gate tunnel field-effect transistor
NASA Astrophysics Data System (ADS)
Huifang, Xu; Yuehua, Dai; Ning, Li; Jianbin, Xu
2015-05-01
A 2-D semi-analytical model of double gate (DG) tunneling field-effect transistor (TFET) is proposed. By aid of introducing two rectangular sources located in the gate dielectric layer and the channel, the 2-D Poisson equation is solved by using a semi-analytical method combined with an eigenfunction expansion method. The expression of the surface potential is obtained, which is a special function for the infinite series expressions. The influence of the mobile charges on the potential profile is taken into account in the proposed model. On the basis of the potential profile, the shortest tunneling length and the average electrical field can be derived, and the drain current is then constructed by using Kane's model. In particular, the changes of the tunneling parameters Ak and Bk influenced by the drain—source voltage are also incorporated in the predicted model. The proposed model shows a good agreement with TCAD simulation results under different drain—source voltages, silicon film thicknesses, gate dielectric layer thicknesses, and gate dielectric layer constants. Therefore, it is useful to optimize the DG TFET and this provides a physical insight for circuit level design. Project supported by the National Natural Science Foundation of China (No. 61376106) and the Graduate Innovation Fund of Anhui University.
Heo, Jingu; Savvides, Marios
2012-12-01
In this paper, we propose a novel method for generating a realistic 3D human face from a single 2D face image for the purpose of synthesizing new 2D face images at arbitrary poses using gender and ethnicity specific models. We employ the Generic Elastic Model (GEM) approach, which elastically deforms a generic 3D depth-map based on the sparse observations of an input face image in order to estimate the depth of the face image. Particularly, we show that Gender and Ethnicity specific GEMs (GE-GEMs) can approximate the 3D shape of the input face image more accurately, achieving a better generalization of 3D face modeling and reconstruction compared to the original GEM approach. We qualitatively validate our method using publicly available databases by showing each reconstructed 3D shape generated from a single image and new synthesized poses of the same person at arbitrary angles. For quantitative comparisons, we compare our synthesized results against 3D scanned data and also perform face recognition using synthesized images generated from a single enrollment frontal image. We obtain promising results for handling pose and expression changes based on the proposed method. PMID:22201062
Modeling the Elastic Modulus of 2D Woven CVI SiC Composites
NASA Technical Reports Server (NTRS)
Morscher, Gregory N.
2006-01-01
The use of fiber, interphase, CVI SiC minicomposites as structural elements for 2D-woven SiC fiber reinforced chemically vapor infiltrated (CVI) SiC matrix composites is demonstrated to be a viable approach to model the elastic modulus of these composite systems when tensile loaded in an orthogonal direction. The 0deg (loading direction) and 90deg (perpendicular to loading direction) oriented minicomposites as well as the open porosity and excess SiC associated with CVI SiC composites were all modeled as parallel elements using simple Rule of Mixtures techniques. Excellent agreement for a variety of 2D woven Hi-Nicalon(TradeMark) fiber-reinforced and Sylramic-iBN reinforced CVI SiC matrix composites that differed in numbers of plies, constituent content, thickness, density, and number of woven tows in either direction (i.e, balanced weaves versus unbalanced weaves) was achieved. It was found that elastic modulus was not only dependent on constituent content, but also the degree to which 90deg minicomposites carried load. This depended on the degree of interaction between 90deg and 0deg minicomposites which was quantified to some extent by composite density. The relationships developed here for elastic modulus only necessitated the knowledge of the fractional contents of fiber, interphase and CVI SiC as well as the tow size and shape. It was concluded that such relationships are fairly robust for orthogonally loaded 2D woven CVI SiC composite system and can be implemented by ceramic matrix composite component modelers and designers for modeling the local stiffness in simple or complex parts fabricated with variable constituent contents.
A solidification constitutive model for NIKE2D and NIKE3D
Raboin, P.J.
1994-03-17
This memo updates the current status of a solidification material model development which has been underway for more than a year. Significant modeling goals such as predicting cut-off stresses, thermo-elasto-plasticity, strain rate dependent plasticity and dynamic recovery have been completed. The model is called SOLMAT for solidification material model, and while developed for NIKE2D, it has already been implemented in NIKE3D and NIT03D by B. Maker. This memo details the future development strategy of SOLMAT including liquid and solid constitutive improvements, coupling of deviatoric and dilatational deformation and a plan to switch between constitutive theories. It explains some of the difficulties associated solidification modeling and proposes two experiments to measure properties for using SOLMAT. Due to the sensitive nature of these plans in relation to programmatic and CRADA concerns, this memo should be treated as confidential document.
An Integrative Model of Excitation Driven Fluid Flow in a 2D Uterine Channel
NASA Astrophysics Data System (ADS)
Maggio, Charles; Fauci, Lisa; Chrispell, John
2009-11-01
We present a model of intra-uterine fluid flow in a sagittal cross-section of the uterus by inducing peristalsis in a 2D channel. This is an integrative multiscale computational model that takes as input fluid viscosity, passive tissue properties of the uterine channel and a prescribed wave of membrane depolarization. This voltage pulse is coupled to a model of calcium dynamics inside a uterine smooth muscle cell, which in turn drives a kinetic model of myosin phosphorylation governing contractile muscle forces. Using the immersed boundary method, these muscle forces are communicated to a fluid domain to simulate the contractions which occur in a human uterus. An analysis of the effects of model parameters on the flow properties and emergent geometry of the peristaltic channel will be presented.
Global regularity for the 2D Oldroyd-B model in the corotational case
NASA Astrophysics Data System (ADS)
Ye, Zhuan; Xu, Xiaojing
2016-09-01
This paper is dedicated to the Oldroyd-B model with fractional dissipation $(-\\Delta)^{\\alpha}\\tau$ for any $\\alpha>0$. We establish the global smooth solutions to the Oldroyd-B model in the corotational case with arbitrarily small fractional powers of the Laplacian in two spatial dimensions. The methods described here are quite different from the tedious iterative approach used in recent paper \\cite{XY}. Moreover, in the Appendix we provide some a priori estimates to the Oldroyd-B model in the critical case which may be useful and of interest for future improvement. Finally, the global regularity to to the Oldroyd-B model in the corotational case with $-\\Delta u$ replaced by $(-\\Delta)^{\\gamma}u$ for $\\gamma>1$ are also collected in the Appendix. Therefore our result is more closer to the resolution of the well-known global regularity issue on the critical 2D Oldroyd-B model.
A velocity-dependent anomalous radial transport model for (2-D, 2-V) kinetic transport codes
NASA Astrophysics Data System (ADS)
Bodi, Kowsik; Krasheninnikov, Sergei; Cohen, Ron; Rognlien, Tom
2008-11-01
Plasma turbulence constitutes a significant part of radial plasma transport in magnetically confined plasmas. This turbulent transport is modeled in the form of anomalous convection and diffusion coefficients in fluid transport codes. There is a need to model the same in continuum kinetic edge codes [such as the (2-D, 2-V) transport version of TEMPEST, NEO, and the code being developed by the Edge Simulation Laboratory] with non-Maxwellian distributions. We present an anomalous transport model with velocity-dependent convection and diffusion coefficients leading to a diagonal transport matrix similar to that used in contemporary fluid transport models (e.g., UEDGE). Also presented are results of simulations corresponding to radial transport due to long-wavelength ExB turbulence using a velocity-independent diffusion coefficient. A BGK collision model is used to enable comparison with fluid transport codes.
Evaluation of Hydrus-2D model for solute distribution in subsurface drip
NASA Astrophysics Data System (ADS)
Souza, Claudinei; Bizari, Douglas; Grecco, Katarina
2015-04-01
The competition for water use between agriculture, industry and population has become intense over the years, requiring a rational use of this resource for food production. The subsurface drip irrigation can help producers with the optimization of operating parameters such as frequency and duration of irrigation, flow, spacing and depth of the dripper installation. This information can be obtained by numerical simulations using mathematical models, thus the aim of this study was to evaluate the HYDRUS-2D model from experimental data to predict the size of the wet bulbs generated by emitters of different application rates (1.0 and 1.6 L h-1). The results showed that horizontal displacement (bulb diameter) remained the largest in all the bulbs, observed both in experimental trials and estimated by the model and the correlation between them was high, above 0.90 to below 16% error. We conclude that the HYDRUS-2D model can be used to estimate the dimensions of the wet bulb getting new information on the sizing of the irrigation system.
Exact solution of an anisotropic 2D random walk model with strong memory correlations
NASA Astrophysics Data System (ADS)
Cressoni, J. C.; Viswanathan, G. M.; da Silva, M. A. A.
2013-12-01
Over the last decade, there has been progress in understanding one-dimensional non-Markovian processes via analytic, sometimes exact, solutions. The extension of these ideas and methods to two and higher dimensions is challenging. We report the first exactly solvable two-dimensional (2D) non-Markovian random walk model belonging to the family of the elephant random walk model. In contrast to Lévy walks or fractional Brownian motion, such models incorporate memory effects by keeping an explicit history of the random walk trajectory. We study a memory driven 2D random walk with correlated memory and stops, i.e. pauses in motion. The model has an inherent anisotropy with consequences for its diffusive properties, thereby mixing the dominant regime along one dimension with a subdiffusive walk along a perpendicular dimension. The anomalous diffusion regimes are fully characterized by an exact determination of the Hurst exponent. We discuss the remarkably rich phase diagram, as well as several possible combinations of the independent walks in both directions. The relationship between the exponents of the first and second moments is also unveiled.
Molecular-dynamics of a 2D Model of the Shape Memory Effect
NASA Astrophysics Data System (ADS)
Kastner, Oliver
2006-08-01
This work investigates the thermodynamic properties of a qualitative atomistic model for austenite martensite transitions. The model, still in 2D, employs Lennard-Jones potentials for the determination of the atomic interactions. By use of two atom species it is possible to identify three stable lattice structures in 2D, interpreted as austenite and two variants of martensite. The model is described in the first part of the work [6] in detail. The present work studies the thermodynamic properties of the model concerning a small, 2-dimensional test assembly consisting of 41 atoms. The phase stability is investigated by exploitation of the condition of minimal free energy. The free energy is calculated from the thermal equation of state, which is measured in numerical tensile tests. In the second part of this work a chain of eleven 41-atom assemblies is investigated. The chain is interpreted as an idealized larger body, where the individual crystallites represent crystallographic layers allowing for the creation of micro structure. By use of tensile tests at various temperature conditions we sketch how such chain may exhibit quasi-plasticity, pseudo-elasticity and the shape memory effect.
Momentum Transport: 2D and 3D Cloud Resolving Model Simulations
NASA Technical Reports Server (NTRS)
Tao, Wei-Kuo
2001-01-01
The major objective of this study is to investigate the momentum budgets associated with several convective systems that developed during the TOGA COARE IOP (west Pacific warm pool region) and GATE (east Atlantic region). The tool for this study is the improved Goddard Cumulas Ensemble (GCE) model which includes a 3-class ice-phase microphysical scheme, explicit cloud radiative interactive processes and air-sea interactive surface processes. The model domain contains 256 x 256 grid points (with 2 km resolution) in the horizontal and 38 grid points (to a depth of 22 km) in the vertical. The 2D domain has 1024 grid points. The simulations were performed over a 7-day time period (December 19-26, 1992, for TOGA COARE and September 1-7, 1994 for GATE). Cyclic literal boundary conditions are required for this type of long-term integration. Two well organized squall systems (TOGA, COARE February 22, 1993, and GATE September 12, 1994) were also simulated using the 3D GCE model. Only 9 h simulations were required to cover the life time of the squall systems. the lateral boundary conditions were open for these two squall systems simulations. the following will be examined: (1) the momentum budgets in the convective and stratiform regions, (2) the relationship between momentum transport and cloud organization (i.e., well organized squall lines versus less organized convective), (3) the differences and similarities in momentum transport between 2D and 3D simulated convective systems, and (4) the differences and similarities in momentum budgets between cloud systems simulated with open and cyclic lateral boundary conditions. Preliminary results indicate that there are only small differences between 2D and 3D simulated momentum budgets. Major differences occur, however, between momentum budgets associated with squall systems simulated using different lateral boundary conditions.
Fan, D.; Geng, C.; Chen, L.Q.
1997-03-01
The local kinetics and topological phenomena during normal grain growth were studied in two dimensions by computer simulations employing a continuum diffuse-interface field model. The relationships between topological class and individual grain growth kinetics were examined, and compared with results obtained previously from analytical theories, experimental results and Monte Carlo simulations. It was shown that both the grain-size and grain-shape (side) distributions are time-invariant and the linear relationship between the mean radii of individual grains and topological class n was reproduced. The moments of the shape distribution were determined, and the differences among the data from soap froth. Potts model and the present simulation were discussed. In the limit when the grain size goes to zero, the average number of grain edges per grain is shown to be between 4 and 5, implying the direct vanishing of 4- and 5-sided grains, which seems to be consistent with recent experimental observations on thin films. Based on the simulation results, the conditions for the applicability of the familiar Mullins-Von Neumann law and the Hillert`s equation were discussed.
A quasi 2D semianalytical model for the potential profile in hetero and homojunction tunnel FETs
NASA Astrophysics Data System (ADS)
Villani, F.; Gnani, E.; Gnudi, A.; Reggiani, S.; Baccarani, G.
2015-11-01
A quasi 2D semianalytical model for the potential profile in hetero and homojunction tunnel FETs is developed and compared with full-quantum simulation results. It will be shown that the pure analytical solution perfectly matches results at high VDS. However, a coupling with the numerical solution of the 1D Poisson equation in the radial direction is necessary at low VDS, in order to properly account for the charge density in equilibrium with the drain contact. With such an approach we are able to correctly predict the potential profile for both the linear and saturation regimes.
Vector chiral phases in the frustrated 2D XY model and quantum spin chains.
Schenck, H; Pokrovsky, V L; Nattermann, T
2014-04-18
The phase diagram of the frustrated 2D classical and 1D quantum XY models is calculated analytically. Four transitions are found: the vortex unbinding transitions triggered by strong fluctuations occur above and below the chiral transition temperature. Vortex interaction is short range on small and logarithmic on large scales. The chiral transition, though belonging to the Ising universality class by symmetry, has different critical exponents due to nonlocal interaction. In a narrow region close to the Lifshitz point a reentrant phase transition between paramagnetic and quasiferromagnetic phase appears. Applications to antiferromagnetic quantum spin chains and multiferroics are discussed. PMID:24785067
NASA Astrophysics Data System (ADS)
Zou, B.; Li, D. F.; Hu, H. J.; Zhang, H. W.; Lou, L. H.; Chen, M.; Lv, Z. Y.
Based on the verified two dimensional(2D) finite element model for river flow simulation, the effect of estuary training levees on the water flow and sediment movement in the Yellow River estuary is analyzed. For disclosing the effect of setting the two training levees on the flow and sediment motion, the calculation and analysis for the two projects, (one is no levees, the other is setting up two no levees) are given. The results show that when setting up two training levees, water flow is bound by levees and the water flows become more concentrated. As a result, velocity increases in the main channel, sediment carrying capacity of water flow increases correspondingly.
Image restoration using 2D autoregressive texture model and structure curve construction
NASA Astrophysics Data System (ADS)
Voronin, V. V.; Marchuk, V. I.; Petrosov, S. P.; Svirin, I.; Agaian, S.; Egiazarian, K.
2015-05-01
In this paper an image inpainting approach based on the construction of a composite curve for the restoration of the edges of objects in an image using the concepts of parametric and geometric continuity is presented. It is shown that this approach allows to restore the curved edges and provide more flexibility for curve design in damaged image by interpolating the boundaries of objects by cubic splines. After edge restoration stage, a texture restoration using 2D autoregressive texture model is carried out. The image intensity is locally modeled by a first spatial autoregressive model with support in a strongly causal prediction region on the plane. Model parameters are estimated by Yule-Walker method. Several examples considered in this paper show the effectiveness of the proposed approach for large objects removal as well as recovery of small regions on several test images.
Kosaki-Longo index and classification of charges in 2D quantum spin models
NASA Astrophysics Data System (ADS)
Naaijkens, Pieter
2013-08-01
We consider charge superselection sectors of two-dimensional quantum spin models corresponding to cone localisable charges, and prove that the number of equivalence classes of such charges is bounded by the Kosaki-Longo index of an inclusion of certain observable algebras. To demonstrate the power of this result we apply the theory to the toric code on a 2D infinite lattice. For this model we can compute the index of this inclusion, and conclude that there are four distinct irreducible charges in this model, in accordance with the analysis of the toric code model on compact surfaces. We also give a sufficient criterion for the non-degeneracy of the charge sectors, in the sense that Verlinde's matrix S is invertible.
Accelerating numerical modeling of wave propagation through 2-D anisotropic materials using OpenCL.
Molero, Miguel; Iturrarán-Viveros, Ursula
2013-03-01
We present an implementation of the numerical modeling of elastic waves propagation, in 2D anisotropic materials, using the new parallel computing devices (PCDs). Our study is aimed both to model laboratory experiments and explore the capabilities of the emerging PCDs by discussing performance issues. In the experiments a sample plate of an anisotropic material placed inside a water tank is rotated and, for every angle of rotation it is subjected to an ultrasonic wave (produced by a large source transducer) that propagates in the water and through the material producing some reflection and transmission signals that are recording by a "point-like" receiver. This experiment is numerically modeled by running a finite difference code covering a set of angles θ∈[-50°, 50°], and recorded the signals for the transmission and reflection results. Transversely anisotropic and weakly orthorhombic materials are considered. We accelerated the computation using an open-source toolkit called PyOpenCL, which lets one to easily access the OpenCL parallel computation API's from the high-level programming environment of Python. A speedup factor over 19 using the GPU is obtained when compared with the execution of the same program in parallel using a CPU multi-core (in this case we use the 4-cores that has the CPU). The performance for different graphic cards and operating systems is included together with the full 2-D finite difference code with PyOpenCL. PMID:23290584
Self-Organization in 2D Traffic Flow Model with Jam-Avoiding Drive
NASA Astrophysics Data System (ADS)
Nagatani, Takashi
1995-04-01
A stochastic cellular automaton (CA) model is presented to investigate the traffic jam by self-organization in the two-dimensional (2D) traffic flow. The CA model is the extended version of the 2D asymmetric exclusion model to take into account jam-avoiding drive. Each site contains either a car moving to the up, a car moving to the right, or is empty. A up car can shift right with probability p ja if it is blocked ahead by other cars. It is shown that the three phases (the low-density phase, the intermediate-density phase and the high-density phase) appear in the traffic flow. The intermediate-density phase is characterized by the right moving of up cars. The jamming transition to the high-density jamming phase occurs with higher density of cars than that without jam-avoiding drive. The jamming transition point p 2c increases with the shifting probability p ja. In the deterministic limit of p ja=1, it is found that a new jamming transition occurs from the low-density synchronized-shifting phase to the high-density moving phase with increasing density of cars. In the synchronized-shifting phase, all up cars do not move to the up but shift to the right by synchronizing with the move of right cars. We show that the jam-avoiding drive has an important effect on the dynamical jamming transition.
Stochastic dynamics of phase singularities under ventricular fibrillation in 2D Beeler-Reuter model
NASA Astrophysics Data System (ADS)
Suzuki, Akio; Konno, Hidetoshi
2011-09-01
The dynamics of ventricular fibrillation (VF) has been studied extensively, and the initiation mechanism of VF has been elucidated to some extent. However, the stochastic dynamical nature of sustained VF remains unclear so far due to the complexity of high dimensional chaos in a heterogeneous system. In this paper, various statistical mechanical properties of sustained VF are studied numerically in 2D Beeler-Reuter-Drouhard-Roberge (BRDR) model with normal and modified ionic current conductance. The nature of sustained VF is analyzed by measuring various fluctuations of spatial phase singularity (PS) such as velocity, lifetime, the rates of birth and death. It is found that the probability density function (pdf) for lifetime of PSs is independent of system size. It is also found that the hyper-Gamma distribution serves as a universal pdf for the counting number of PSs for various system sizes and various parameters of our model tissue under VF. Further, it is demonstrated that the nonlinear Langevin equation associated with a hyper-Gamma process can mimic the pdf and temporal variation of the number of PSs in the 2D BRDR model.
NASA Astrophysics Data System (ADS)
Yan, Bo; Li, Yuguo; Liu, Ying
2016-07-01
In this paper, we present an adaptive finite element (FE) algorithm for direct current (DC) resistivity modeling in 2-D generally anisotropic conductivity structures. Our algorithm is implemented on an unstructured triangular mesh that readily accommodates complex structures such as topography and dipping layers and so on. We implement a self-adaptive, goal-oriented grid refinement algorithm in which the finite element analysis is performed on a sequence of refined grids. The grid refinement process is guided by an a posteriori error estimator. The problem is formulated in terms of total potentials where mixed boundary conditions are incorporated. This type of boundary condition is superior to the Dirichlet type of conditions and improves numerical accuracy considerably according to model calculations. We have verified the adaptive finite element algorithm using a two-layered earth with azimuthal anisotropy. The FE algorithm with incorporation of mixed boundary conditions achieves high accuracy. The relative error between the numerical and analytical solutions is less than 1% except in the vicinity of the current source location, where the relative error is up to 2.4%. A 2-D anisotropic model is used to demonstrate the effects of anisotropy upon the apparent resistivity in DC soundings.
Qu, Qiang; Qu, Jian; Han, Lu; Zhan, Min; Wu, Lan-xiang; Zhang, Yi-wen; Zhang, Wei; Zhou, Hong-hao
2014-01-01
Aim: Herbal products have been widely used, and the safety of herb-drug interactions has aroused intensive concerns. This study aimed to investigate the effects of phytochemicals on the catalytic activities of human CYP2D6*1 and CYP2D6*10 in vitro. Methods: HepG2 cells were stably transfected with CYP2D6*1 and CYP2D6*10 expression vectors. The metabolic kinetics of the enzymes was studied using HPLC and fluorimetry. Results: HepG2-CYP2D6*1 and HepG2-CYP2D6*10 cell lines were successfully constructed. Among the 63 phytochemicals screened, 6 compounds, including coptisine sulfate, bilobalide, schizandrin B, luteolin, schizandrin A and puerarin, at 100 μmol/L inhibited CYP2D6*1- and CYP2D6*10-mediated O-demethylation of a coumarin compound AMMC by more than 50%. Furthermore, the inhibition by these compounds was dose-dependent. Eadie-Hofstee plots demonstrated that these compounds competitively inhibited CYP2D6*1 and CYP2D6*10. However, their Ki values for CYP2D6*1 and CYP2D6*10 were very close, suggesting that genotype-dependent herb-drug inhibition was similar between the two variants. Conclusion: Six phytochemicals inhibit CYP2D6*1 and CYP2D6*10-mediated catalytic activities in a dose-dependent manner in vitro. Thus herbal products containing these phytochemicals may inhibit the in vivo metabolism of co-administered drugs whose primary route of elimination is CYP2D6. PMID:24786236
Modeling and Control of 2-D Grasping of an Object with Arbitrary Shape under Rolling Contact
NASA Astrophysics Data System (ADS)
Arimoto, Suguru; Yoshida, Morio; Sekimoto, Masahiro; Tahara, Kenji
Modeling, control, and stabilization of dynamics of two-dimensional object grasping by using a pair of multi-joint robot fingers are investigated under rolling contact constraints and an arbitrary geometry of the object and fingertips. First, a fundamental testbed problem of modeling and control of rolling motion between 2-D rigid bodies with an arbitrary shape is treated under the assumption that the two contour curves coincide at the contact point and share the same tangent. The rolling constraint induces the Euler equation of motion that is parameterized by a common arclength parameter and constrained onto the kernel space orthogonally complemented to the image space spanned from the constraint gradient. By extending the analysis to the problem of stable grasp of a 2-D object with an arbitrary shape by a pair of robot fingers, the Euler-Lagrange equation of motion of the overall fingers/object system parametrized by arclength parameters is derived, together with a couple of first-order differential equations that express evolutions of contact points in terms of the second fundamental form. It is shown that 2-D rolling constraints are integrable in the sense of Frobonius even if their Pfaffian forms are characterized by arclength parameters. A control signal called “blind grasping” is introduced and shown to be effective in stabilization of grasping without using the details of the object shape and parameters or external sensing. An extension of the Dirichlet-Lagrange stability theorem to a class of systems with DOF-redundancy under constraints is suggested by using a Morse-Bott-Lyapunov function.
Uncertainties in modelling Mt. Pinatubo eruption with 2-D AER model and CCM SOCOL
NASA Astrophysics Data System (ADS)
Kenzelmann, P.; Weisenstein, D.; Peter, T.; Luo, B. P.; Rozanov, E.; Fueglistaler, S.; Thomason, L. W.
2009-04-01
Large volcanic eruptions may introduce a strong forcing on climate. They challenge the skills of climate models. In addition to the short time attenuation of solar light by ashes the formation of stratospheric sulphate aerosols, due to volcanic sulphur dioxide injection into the lower stratosphere, may lead to a significant enhancement of the global albedo. The sulphate aerosols have a residence time of about 2 years. As a consequence of the enhanced sulphate aerosol concentration both the stratospheric chemistry and dynamics are strongly affected. Due to absorption of longwave and near infrared radiation the temperature in the lower stratosphere increases. So far chemistry climate models overestimate this warming [Eyring et al. 2006]. We present an extensive validation of extinction measurements and model runs of the eruption of Mt. Pinatubo in 1991. Even if Mt. Pinatubo eruption has been the best quantified volcanic eruption of this magnitude, the measurements show considerable uncertainties. For instance the total amount of sulphur emitted to the stratosphere ranges from 5-12 Mt sulphur [e.g. Guo et al. 2004, McCormick, 1992]. The largest uncertainties are in the specification of the main aerosol cloud. SAGE II, for instance, could not measure the peak of the aerosol extinction for about 1.5 years, because optical termination was reached. The gap-filling of the SAGE II [Thomason and Peter, 2006] using lidar measurements underestimates the total extinctions in the tropics for the first half year after the eruption by 30% compared to AVHRR [Rusell et. al 1992]. The same applies to the optical dataset described by Stenchikov et al. [1998]. We compare these extinction data derived from measurements with extinctions derived from AER 2D aerosol model calculations [Weisenstein et al., 2007]. Full microphysical calculations with injections of 14, 17, 20 and 26 Mt SO2 in the lower stratosphere were performed. The optical aerosol properties derived from SAGE II
Longtime Well-posedness for the 2D Groma-Balogh Model
NASA Astrophysics Data System (ADS)
Wan, Renhui; Chen, Jiecheng
2016-07-01
In this paper, we consider the cauchy problem for the 2D Groma-Balogh model (Acta Mater 47:3647-3654, 1999). From the works Cannone et al. (Arch Ration Mech Anal 196:71-96, 2010) and El Hajj (Ann Inst Henri Poincaré Anal Nonlinéaire 27:21-35, 2010), one can see global well-posedness for this model is an open question. However, we can prove longtime well-posedness. In particular, we show that this model admits a unique solution with the lifespan T^star satisfying T^star log ^2(1+T^star )≳ ɛ ^{-2} if the initial data is of size ɛ . To achieve this, we first establish some new decay estimates concerning the operator e^{-{R}_{12}^2t} . Then, we prove the longtime well-posedness by utilizing the weak dissipation to deal with the nonlinear terms.
Well-posedness and generalized plane waves simulations of a 2D mode conversion model
NASA Astrophysics Data System (ADS)
Imbert-Gérard, Lise-Marie
2015-12-01
Certain types of electro-magnetic waves propagating in a plasma can undergo a mode conversion process. In magnetic confinement fusion, this phenomenon is very useful to heat the plasma, since it permits to transfer the heat at or near the plasma center. This work focuses on a mathematical model of wave propagation around the mode conversion region, from both theoretical and numerical points of view. It aims at developing, for a well-posed equation, specific basis functions to study a wave mode conversion process. These basis functions, called generalized plane waves, are intrinsically based on variable coefficients. As such, they are particularly adapted to the mode conversion problem. The design of generalized plane waves for the proposed model is described in detail. Their implementation within a discontinuous Galerkin method then provides numerical simulations of the process. These first 2D simulations for this model agree with qualitative aspects studied in previous works.
The concept models and implementations of multiport neural net associative memory for 2D patterns
NASA Astrophysics Data System (ADS)
Krasilenko, Vladimir G.; Nikolskyy, Aleksandr I.; Yatskovskaya, Rimma A.; Yatskovsky, Victor I.
2011-04-01
The paper considers neural net models and training and recognizing algorithms with base neurobiologic operations: p-step autoequivalence and non-equivalenc The Modified equivalently models (MEMs) of multiport neural net associative memory (MNNAM) are offered with double adaptive - equivalently weighing (DAEW) for recognition of 2D-patterns (images). It is shown, the computing process in MNNAM under using the proposed MEMs, is reduced to two-step and multi-step algorithms and step-by-step matrix-matrix (tensor-tensor) procedures. The given results of computer simulations confirmed the perspective of such models. Besides the result was received when MNNAM capacity on base of MEMs exceeded the amount of neurons.
Modeling floods in a dense urban area using 2D shallow water equations
NASA Astrophysics Data System (ADS)
Mignot, E.; Paquier, A.; Haider, S.
2006-07-01
SummaryA code solving the 2D shallow water equations by an explicit second-order scheme is used to simulate the severe October 1988 flood in the Richelieu urban locality of the French city of Nîmes. A reference calculation using a detailed description of the street network and of the cross-sections of the streets, considering impervious residence blocks and neglecting the flow interaction with the sewer network provides a mean peak water elevation 0.13 m lower than the measured flood marks with a standard deviation between the measured and computed water depths of 0.53 m. Sensitivity analysis of various topographical and numerical parameters shows that globally, the results keep the same level of accuracy, which reflects both the stability of the calculation method and the smoothening of results. However, the local flow modifications due to change of parameter values can drastically modify the local water depths, especially when the local flow regime is modified. Furthermore, the flow distribution to the downstream parts of the city can be altered depending on the set of parameters used. Finally, a second event, the 2002 flood, was simulated with the calibrated model providing results similar to 1988 flood calculation. Thus, the article shows that, after calibration, a 2D model can be used to help planning mitigation measures in a dense urban area.
Modeling and 2-D discrete simulation of dislocation dynamics for plastic deformation of metal
NASA Astrophysics Data System (ADS)
Liu, Juan; Cui, Zhenshan; Ou, Hengan; Ruan, Liqun
2013-05-01
Two methods are employed in this paper to investigate the dislocation evolution during plastic deformation of metal. One method is dislocation dynamic simulation of two-dimensional discrete dislocation dynamics (2D-DDD), and the other is dislocation dynamics modeling by means of nonlinear analysis. As screw dislocation is prone to disappear by cross-slip, only edge dislocation is taken into account in simulation. First, an approach of 2D-DDD is used to graphically simulate and exhibit the collective motion of a large number of discrete dislocations. In the beginning, initial grains are generated in the simulation cells according to the mechanism of grain growth and the initial dislocation is randomly distributed in grains and relaxed under the internal stress. During the simulation process, the externally imposed stress, the long range stress contribution of all dislocations and the short range stress caused by the grain boundaries are calculated. Under the action of these forces, dislocations begin to glide, climb, multiply, annihilate and react with each other. Besides, thermal activation process is included. Through the simulation, the distribution of dislocation and the stress-strain curves can be obtained. On the other hand, based on the classic dislocation theory, the variation of the dislocation density with time is described by nonlinear differential equations. Finite difference method (FDM) is used to solve the built differential equations. The dislocation evolution at a constant strain rate is taken as an example to verify the rationality of the model.
2D and 3D shape based segmentation using deformable models.
El-Baz, Ayman; Yuksel, Seniha E; Shi, Hongjian; Farag, Aly A; El-Ghar, Mohamed A; Eldiasty, Tarek; Ghoneim, Mohamed A
2005-01-01
A novel shape based segmentation approach is proposed by modifying the external energy component of a deformable model. The proposed external energy component depends not only on the gray level of the images but also on the shape information which is obtained from the signed distance maps of objects in a given data set. The gray level distribution and the signed distance map of the points inside and outside the object of interest are accurately estimated by modelling the empirical density function with a linear combination of discrete Gaussians (LCDG) with positive and negative components. Experimental results on the segmentation of the kidneys from low-contrast DCE-MRI and on the segmentation of the ventricles from brain MRI's show how the approach is accurate in segmenting 2-D and 3-D data sets. The 2D results for the kidney segmentation have been validated by a radiologist and the 3D results of the ventricle segmentation have been validated with a geometrical phantom. PMID:16686036
Interpretation of gravity data using 2-D continuous wavelet transformation and 3-D inverse modeling
NASA Astrophysics Data System (ADS)
Roshandel Kahoo, Amin; Nejati Kalateh, Ali; Salajegheh, Farshad
2015-10-01
Recently the continuous wavelet transform has been proposed for interpretation of potential field anomalies. In this paper, we introduced a 2D wavelet based method that uses a new mother wavelet for determination of the location and the depth to the top and base of gravity anomaly. The new wavelet is the first horizontal derivatives of gravity anomaly of a buried cube with unit dimensions. The effectiveness of the proposed method is compared with Li and Oldenburg inversion algorithm and is demonstrated with synthetics and real gravity data. The real gravity data is taken over the Mobrun massive sulfide ore body in Noranda, Quebec, Canada. The obtained results of the 2D wavelet based algorithm and Li and Oldenburg inversion on the Mobrun ore body had desired similarities to the drill-hole depth information. In all of the inversion algorithms the model non-uniqueness is the challenging problem. Proposed method is based on a simple theory and there is no model non-uniqueness on it.
A 2D Electromechanical Model of Human Atrial Tissue Using the Discrete Element Method
Brocklehurst, Paul; Adeniran, Ismail; Yang, Dongmin; Sheng, Yong; Zhang, Henggui; Ye, Jianqiao
2015-01-01
Cardiac tissue is a syncytium of coupled cells with pronounced intrinsic discrete nature. Previous models of cardiac electromechanics often ignore such discrete properties and treat cardiac tissue as a continuous medium, which has fundamental limitations. In the present study, we introduce a 2D electromechanical model for human atrial tissue based on the discrete element method (DEM). In the model, single-cell dynamics are governed by strongly coupling the electrophysiological model of Courtemanche et al. to the myofilament model of Rice et al. with two-way feedbacks. Each cell is treated as a viscoelastic body, which is physically represented by a clump of nine particles. Cell aggregations are arranged so that the anisotropic nature of cardiac tissue due to fibre orientations can be modelled. Each cell is electrically coupled to neighbouring cells, allowing excitation waves to propagate through the tissue. Cell-to-cell mechanical interactions are modelled using a linear contact bond model in DEM. By coupling cardiac electrophysiology with mechanics via the intracellular Ca2+ concentration, the DEM model successfully simulates the conduction of cardiac electrical waves and the tissue's corresponding mechanical contractions. The developed DEM model is numerically stable and provides a powerful method for studying the electromechanical coupling problem in the heart. PMID:26583141
Locally adaptive 2D-3D registration using vascular structure model for liver catheterization.
Kim, Jihye; Lee, Jeongjin; Chung, Jin Wook; Shin, Yeong-Gil
2016-03-01
Two-dimensional-three-dimensional (2D-3D) registration between intra-operative 2D digital subtraction angiography (DSA) and pre-operative 3D computed tomography angiography (CTA) can be used for roadmapping purposes. However, through the projection of 3D vessels, incorrect intersections and overlaps between vessels are produced because of the complex vascular structure, which makes it difficult to obtain the correct solution of 2D-3D registration. To overcome these problems, we propose a registration method that selects a suitable part of a 3D vascular structure for a given DSA image and finds the optimized solution to the partial 3D structure. The proposed algorithm can reduce the registration errors because it restricts the range of the 3D vascular structure for the registration by using only the relevant 3D vessels with the given DSA. To search for the appropriate 3D partial structure, we first construct a tree model of the 3D vascular structure and divide it into several subtrees in accordance with the connectivity. Then, the best matched subtree with the given DSA image is selected using the results from the coarse registration between each subtree and the vessels in the DSA image. Finally, a fine registration is conducted to minimize the difference between the selected subtree and the vessels of the DSA image. In experimental results obtained using 10 clinical datasets, the average distance errors in the case of the proposed method were 2.34±1.94mm. The proposed algorithm converges faster and produces more correct results than the conventional method in evaluations on patient datasets. PMID:26824922
2-D Modeling of Nanoscale MOSFETs: Non-Equilibrium Green's Function Approach
NASA Technical Reports Server (NTRS)
Svizhenko, Alexei; Anantram, M. P.; Govindan, T. R.; Biegel, Bryan
2001-01-01
We have developed physical approximations and computer code capable of realistically simulating 2-D nanoscale transistors, using the non-equilibrium Green's function (NEGF) method. This is the most accurate full quantum model yet applied to 2-D device simulation. Open boundary conditions and oxide tunneling are treated on an equal footing. Electrons in the ellipsoids of the conduction band are treated within the anisotropic effective mass approximation. Electron-electron interaction is treated within Hartree approximation by solving NEGF and Poisson equations self-consistently. For the calculations presented here, parallelization is performed by distributing the solution of NEGF equations to various processors, energy wise. We present simulation of the "benchmark" MIT 25nm and 90nm MOSFETs and compare our results to those from the drift-diffusion simulator and the quantum-corrected results available. In the 25nm MOSFET, the channel length is less than ten times the electron wavelength, and the electron scattering time is comparable to its transit time. Our main results are: (1) Simulated drain subthreshold current characteristics are shown, where the potential profiles are calculated self-consistently by the corresponding simulation methods. The current predicted by our quantum simulation has smaller subthreshold slope of the Vg dependence which results in higher threshold voltage. (2) When gate oxide thickness is less than 2 nm, gate oxide leakage is a primary factor which determines off-current of a MOSFET (3) Using our 2-D NEGF simulator, we found several ways to drastically decrease oxide leakage current without compromising drive current. (4) Quantum mechanically calculated electron density is much smaller than the background doping density in the poly silicon gate region near oxide interface. This creates an additional effective gate voltage. Different ways to. include this effect approximately will be discussed.
Be2D: A model to understand the distribution of meteoric 10Be in soilscapes
NASA Astrophysics Data System (ADS)
Campforts, Benjamin; Vanacker, Veerle; Vanderborght, Jan; Govers, Gerard
2016-04-01
Cosmogenic nuclides have revolutionised our understanding of earth surface process rates. They have become one of the standard tools to quantify soil production by weathering, soil redistribution and erosion. Especially Beryllium-10 has gained much attention due to its long half-live and propensity to be relatively conservative in the landscape. The latter makes 10Be an excellent tool to assess denudation rates over the last 1000 to 100 × 103 years, bridging the anthropogenic and geological time scale. Nevertheless, the mobility of meteoric 10Be in soil systems makes translation of meteoric 10Be inventories into erosion and deposition rates difficult. Here we present a coupled soil hillslope model, Be2D, that is applied to synthetic and real topography to address the following three research questions. (i) What is the influence of vertical meteoric Be10 mobility, caused by chemical mobility, clay translocation and bioturbation, on its lateral redistribution over the soilscape, (ii) How does vertical mobility influence erosion rates and soil residence times inferred from meteoric 10Be inventories and (iii) To what extent can a tracer with a half-life of 1.36 Myr be used to distinguish between natural and human-disturbed soil redistribution rates? The model architecture of Be2D is designed to answer these research questions. Be2D is a dynamic model including physical processes such as soil formation, physical weathering, clay migration, bioturbation, creep, overland flow and tillage erosion. Pathways of meteoric 10Be mobility are simulated using a two step approach which is updated each timestep. First, advective and diffusive mobility of meteoric 10Be is simulated within the soil profile and second, lateral redistribution because of lateral soil fluxes is calculated. The performance and functionality of the model is demonstrated through a number of synthetic and real model runs using existing datasets of meteoric 10Be from case-studies in southeastern US. Brute
Estimating nitrogen losses in furrow irrigated soil amended by compost using HYDRUS-2D model
NASA Astrophysics Data System (ADS)
Iqbal, Shahid; Guber, Andrey; Zaman Khan, Haroon; ullah, Ehsan
2014-05-01
Furrow irrigation commonly results in high nitrogen (N) losses from soil profile via deep infiltration. Estimation of such losses and their reduction is not a trivial task because furrow irrigation creates highly nonuniform distribution of soil water that leads to preferential water and N fluxes in soil profile. Direct measurements of such fluxes are impractical. The objective of this study was to assess applicability of HYDRUS-2D model for estimating nitrogen balance in manure amended soil under furrow irrigation. Field experiments were conducted in a sandy loam soil amended by poultry manure compost (PMC) and pressmud compost (PrMC) fertilizers. The PMC and PrMC contained 2.5% and 0.9% N and were applied at 5 rates: 2, 4, 6, 8 and 10 ton/ha. Plots were irrigated starting from 26th day from planting using furrows with 1x1 ridge to furrow aspect ratio. Irrigation depths were 7.5 cm and time interval between irrigations varied from 8 to 15 days. Results of the field experiments showed that approximately the same corn yield was obtained with considerably higher N application rates using PMC than using PrMC as a fertilizer. HYDRUS-2D model was implemented to evaluate N fluxes in soil amended by PMC and PrMC fertilizers. Nitrogen exchange between two pools of organic N (compost and soil) and two pools of mineral N (soil NH4-N and soil NO3-N) was modeled using mineralization and nitrification reactions. Sources of mineral N losses from soil profile included denitrification, root N uptake and leaching with deep infiltration of water. HYDRUS-2D simulations showed that the observed increases in N root water uptake and corn yields associated with compost application could not be explained by the amount of N added to soil profile with the compost. Predicted N uptake by roots significantly underestimated the field data. Good agreement between simulated and field-estimated values of N root uptake was achieved when the rate of organic N mineralization was increased
NASA Astrophysics Data System (ADS)
Bezzeccheri, E.; Colasanti, S.; Falco, A.; Liguori, R.; Rubino, A.; Lugli, P.
2016-05-01
Vertical Organic Transistors and Phototransistors have been proven to be promising technologies due to the advantages of reduced channel length and larger sensitive area with respect to planar devices. Nevertheless, a real improvement of their performance is subordinate to the quantitative description of their operation mechanisms. In this work, we present a comparative study on the modeling of vertical and planar Organic Phototransistor (OPT) structures. Computer-based simulations of the devices have been carried out with Synopsys Sentaurus TCAD in a 2D Drift-Diffusion framework. The photoactive semiconductor material has been modeled using the virtual semiconductor approach as the archetypal P3HT:PC61BM bulk heterojunction. It has been found that both simulated devices have comparable electrical and optical characteristics, accordingly to recent experimental reports on the subject.
An investigation of DTNS2D for use as an incompressible turbulence modelling test-bed
NASA Technical Reports Server (NTRS)
Steffen, Christopher J., Jr.
1992-01-01
This paper documents an investigation of a two dimensional, incompressible Navier-Stokes solver for use as a test-bed for turbulence modelling. DTNS2D is the code under consideration for use at the Center for Modelling of Turbulence and Transition (CMOTT). This code was created by Gorski at the David Taylor Research Center and incorporates the pseudo compressibility method. Two laminar benchmark flows are used to measure the performance and implementation of the method. The classical solution of the Blasius boundary layer is used for validating the flat plate flow, while experimental data is incorporated in the validation of backward facing step flow. Velocity profiles, convergence histories, and reattachment lengths are used to quantify these calculations. The organization and adaptability of the code are also examined in light of the role as a numerical test-bed.
Singularities of the Partition Function for the Ising Model Coupled to 2D Quantum Gravity
NASA Astrophysics Data System (ADS)
Ambjørn, J.; Anagnostopoulos, K. N.; Magnea, U.
We study the zeros in the complex plane of the partition function for the Ising model coupled to 2D quantum gravity for complex magnetic field and real temperature, and for complex temperature and real magnetic field, respectively. We compute the zeros by using the exact solution coming from a two-matrix model and by Monte-Carlo simulations of Ising spins on dynamical triangulations. We present evidence that the zeros form simple one-dimensional curves in the complex plane, and that the critical behaviour of the system is governed by the scaling of the distribution of the singularities near the critical point. Despite the small size of the systems studied, we can obtain a reasonable estimate of the (known) critical exponents.
A guide to using material model No. 11 in NIKE2D: An internal variable, viscoplasticity model
Flower, E.C.; Nikkel, D.J. Jr.
1990-10-30
The need to accurately model the superplastic forming process which is highly rate and temperature dependent motivated the evaluation of Bammann's internal variable, viscoplasticity material model. The model is based upon the concepts of unified creep plasticity, but employs a yield surface for efficient implementation into large-scale numerical computer codes. It has proven elsewhere to be quite successful in describing large strain, thermal-mechanical behavior of crystalline materials. Features of the model enable it to simulate the apparent strain-rate behavior exhibited by many metals above one half the melt temperature. It is the efficient incorporation of features that make the model attractive for use in finite element modeling of metal deformation processes. Although this model was implemented into the Lawrence Livermore National Laboratory's NIKE2D finite element program in 1986, there have been no known reports of successful use by NIKE2D users. The purpose of this report is to provide the user the proper format to input model parameters, a procedure for determining appropriate values for material constants from experimental data, and supplemental information on the model relevant to the implementation in the NIKE2D finite element program. Detailed accounts of the theoretical aspects of the model can be found in the cited references. 4 refs., 8 figs.
Neutrino-electron Scattering in 2-D Models of Supernova Convection
NASA Astrophysics Data System (ADS)
DeNisco, K. R.; Swesty, F. D.; Myra, E. S.
2005-12-01
We present results from 2-D supernova simulations which include the effects of neutrino-electron scattering. The importance of neutrino-electron scattering in stellar collapse has been known for two decades. Yet it has often been neglected in multidimensional simulations due to the difficulty of implementing it consistently. The inclusion of this process is numerically challenging because of the extremely short scattering timescales involved. The stiffness resulting from this short timescale precludes an explicit numerical treatment of this phenomenon, such as those that have recently been utilized in some 2-D models. We describe our fully-implicit treatment of this process and present our initial results. This work was performed at the State University of New York at Stony Brook as part of the TeraScale Supernova Initiative, and is funded by SciDAC grant DE-FC02-01ER41185 from the U.S. Department of Energy, Office of Science High-Energy, Nuclear, and Advanced Scientific Computing Research Programs. We gratefully acknowledge support of the National Energy Research Scientific Computing Center (NERSC) for computational and consulting support.
Nutter, C.
1980-11-01
GRAV2D is an interactive computer program used for modeling 2-1/2 dimensional gravity data. A forward algorithm is used to give the theoretical attraction of gravity intensity at a station due to a perturbing body given by the initial model. The resultant model can then be adjusted for a better fit by a combination of manual adjustment, one-dimensional automatic search, and Marquardt inversion. GRAV2D has an interactive data management system for data manipulation and display built around subroutines to do a forward problem, a one-dimensional direct search and an inversion. This is a user's guide and documentation for GRAV2D.
2D time-domain finite-difference modeling for viscoelastic seismic wave propagation
NASA Astrophysics Data System (ADS)
Fan, Na; Zhao, Lian-Feng; Xie, Xiao-Bi; Ge, Zengxi; Yao, Zhen-Xing
2016-07-01
Real Earth media are not perfectly elastic. Instead, they attenuate propagating mechanical waves. This anelastic phenomenon in wave propagation can be modeled by a viscoelastic mechanical model consisting of several standard linear solids. Using this viscoelastic model, we approximate a constant Q over a frequency band of interest. We use a four-element viscoelastic model with a tradeoff between accuracy and computational costs to incorporate Q into 2D time-domain first-order velocity-stress wave equations. To improve the computational efficiency, we limit the Q in the model to a list of discrete values between 2 and 1000. The related stress and strain relaxation times that characterize the viscoelastic model are pre-calculated and stored in a database for use by the finite-difference calculation. A viscoelastic finite-difference scheme that is second-order in time and fourth-order in space is developed based on the MacCormack algorithm. The new method is validated by comparing the numerical result with analytical solutions that are calculated using the generalized reflection/transmission coefficient method. The synthetic seismograms exhibit greater than 95 per cent consistency in a two-layer viscoelastic model. The dispersion generated from the simulation is consistent with the Kolsky-Futterman dispersion relationship.
Transforming 2d Cadastral Data Into a Dynamic Smart 3d Model
NASA Astrophysics Data System (ADS)
Tsiliakou, E.; Labropoulos, T.; Dimopoulou, E.
2013-08-01
3D property registration has become an imperative need in order to optimally reflect all complex cases of the multilayer reality of property rights and restrictions, revealing their vertical component. This paper refers to the potentials and multiple applications of 3D cadastral systems and explores the current state-of-the art, especially the available software with which 3D visualization can be achieved. Within this context, the Hellenic Cadastre's current state is investigated, in particular its data modeling frame. Presenting the methodologies and specifications addressing the registration of 3D properties, the operating cadastral system's shortcomings and merits are pointed out. Nonetheless, current technological advances as well as the availability of sophisticated software packages (proprietary or open source) call for 3D modeling. In order to register and visualize the complex reality in 3D, Esri's CityEngine modeling software has been used, which is specialized in the generation of 3D urban environments, transforming 2D GIS Data into Smart 3D City Models. The application of the 3D model concerns the Campus of the National Technical University of Athens, in which a complex ownership status is established along with approved special zoning regulations. The 3D model was built using different parameters based on input data, derived from cadastral and urban planning datasets, as well as legal documents and architectural plans. The process resulted in a final 3D model, optimally describing the cadastral situation and built environment and proved to be a good practice example of 3D visualization.
NASA Astrophysics Data System (ADS)
Mo, Yike; Greenhalgh, Stewart A.; Robertsson, Johan O. A.; Karaman, Hakki
2015-05-01
Lateral velocity variations and low velocity near-surface layers can produce strong scattered and guided waves which interfere with reflections and lead to severe imaging problems in seismic exploration. In order to investigate these specific problems by laboratory seismic modelling, a simple 2D ultrasonic model facility has been recently assembled within the Wave Propagation Lab at ETH Zurich. The simulated geological structures are constructed from 2 mm thick metal and plastic sheets, cut and bonded together. The experiments entail the use of a piezoelectric source driven by a pulse amplifier at ultrasonic frequencies to generate Lamb waves in the plate, which are detected by piezoelectric receivers and recorded digitally on a National Instruments recording system, under LabVIEW software control. The 2D models employed were constructed in-house in full recognition of the similitude relations. The first heterogeneous model features a flat uniform low velocity near-surface layer and deeper dipping and flat interfaces separating different materials. The second model is comparable but also incorporates two rectangular shaped inserts, one of low velocity, the other of high velocity. The third model is identical to the second other than it has an irregular low velocity surface layer of variable thickness. Reflection as well as transmission experiments (crosshole & vertical seismic profiling) were performed on each model. The two dominant Lamb waves recorded are the fundamental symmetric mode (non-dispersive) and the fundamental antisymmetric (flexural) dispersive mode, the latter normally being absent when the source transducer is located on a model edge but dominant when it is on the flat planar surface of the plate. Experimental group and phase velocity dispersion curves were determined and plotted for both modes in a uniform aluminium plate. For the reflection seismic data, various processing techniques were applied, as far as pre-stack Kirchhoff migration. The
Turbulence modeling for subsonic separated flows over 2-D airfoils and 3-D wings
NASA Astrophysics Data System (ADS)
Rosen, Aaron M.
Accurate predictions of turbulent boundary layers and flow separation through computational fluid dynamics (CFD) are becoming more and more essential for the prediction of loads in the design of aerodynamic flight components. Standard eddy viscosity models used in many commercial codes today do not capture the nonequilibrium effects seen in a separated flow and thus do not generally make accurate separation predictions. Part of the reason for this is that under nonequilibrium conditions such as a strong adverse pressure gradient, the history effects of the flow play an important role in the growth and decay of turbulence. More recent turbulence models such as Olsen and Coakley's Lag model and Lillard's lagRST model seek to simulate these effects by lagging the turbulent variables when nonequilibrium effects become important. The purpose of the current research is to assess how these nonequilibrium turbulence models capture the separated regions on various 2-D airfoils and 3-D wings. Nonequilibrium models including the Lag model and the lagRST model are evaluated in comparison with three baseline models (Spalart-Allmaras, Wilcox's k-omega, and Menter's SST) using a modified version of the OVERFLOW code. Tuning the model coefficients of the Lag and lagRST models is also explored. Results show that the various lagRST formulations display an improvement in velocity profile predictions over the standard RANS models, but have trouble capturing the edge of the boundary layer. Experimental separation location measurements were not available, but several trends are noted which may be useful to tuning the model coefficients in the future.
2D-photochemical modeling of Saturn’s stratosphere: hydrocarbon and water distributions
NASA Astrophysics Data System (ADS)
Hue, Vincent; Cavalié, Thibault; Hersant, Franck; Dobrijevic, Michel; Greathouse, Thomas; Lellouch, Emmanuel; Hartogh, Paul; Cassidy, Timothy; Spiga, Aymeric; Guerlet, Sandrine; Sylvestre, Melody
2014-11-01
Saturn’s axial tilt of 27° produces seasons in a similar way as on Earth. The seasonal forcing over Saturn’s 30 years period influences the production/loss of the major atmospheric absorbers and coolants through photochemistry, and influences therefore Saturn’s stratospheric temperatures. We have developed a 2D time-dependent photochemical model of Saturn’s atmosphere [Hue et al., in prep.], coupled to a radiative-climate model [Greathouse et al., 2008] to study seasonal effects on its atmospheric composition. Cassini spacecraft has revealed that the distribution of hydrocarbons in Saturn’s stratosphere [Guerlet et al., 2009] differs from pure photochemical predictions, i.e. without meridional transport [Moses et al., 2005]. Differences between the observed distribution of hydrocarbons and 2D-photochemical predictions are likely to be an indicator of dynamical forcing.Disentangling the origin of water in the stratosphere of this planet has been a long-term issue. Due to Saturn’s cold tropopause trap, which acts as a transport barrier, the water vapor observed by the Infrared Space Observatory (ISO) [Feuchtgruber et al., 1997] has an external origin. Three external sources have been identified: (i) permanent flux from interplanetary dust particles, (ii) local sources form planetary environments (rings, satellites), (iii) large cometary impacts, similar to Shoemaker-Levy 9 on Jupiter. Previous observations of Saturn with Herschel’s Hsso program [Hartogh et al., 2009] led to the detection of a water torus around Saturn [Hartogh et al., 2011], fed by Enceladus’ geysers. A substantial fraction of this torus is predicted to be a local source of water for Saturn’s and its satellites, as it will spread in this system [Cassidy et al., 2010]. Using the new 2D-photochemical model, we test here the validity of Enceladus’ torus as the source of Saturn’s stratospheric water.References : Hue et al., in prep. Greathouse et al., 2008. AGU Fall Meeting
On the assimilation of flood extension images into 2D shallow-water models
NASA Astrophysics Data System (ADS)
Monnier, J.; Couderc, F.; Dartus, D.; Madec, R.; Vila, J.
2012-12-01
In river hydraulics, assimilation of water level measurements at gauging stations is well controlled, while assimilation of images (e.g. from satellite) is still delicate. In the present talk, we address the richness of satellite information to constraint a 2D shallow-water model, and present also related difficulties. A preliminary study done on Mosel river is presented in [LaMo] [HoLaMoPu]. On selected parts of the image, an 0th order model flow allows to obtain some reliable water levels with quantified uncertainties (C. Puech et al.). Next, variationnal sensitivities (based on a gradient computation and adjoint equations) reveal some difficulties that a model designer have to tackle (e.g. roughness parameters at open boundaries), and allow to better understand both the model and the flow. Next, a variational data assimilation algorithm (4D-var) shows that such data lead to a better calibration of the model (e.g. roughness coefficients) and potentially allows to identify the incoming and/or outgoing flow at open boundaries, [LaMo] [HoLaMoPu]. On the other side, the flood dynamic extension is difficult to represent accurately using a 2D SW model since the wet-dry front dynamics is difficult to compute. We compare some 2nd order finite volume solvers and obtain an accurate and stable scheme at wet-dry front. Then, we present some basic rules of compatibility between data and mesh resolution in order to be reliable enough to constraint the model with flood extension data, [CoMaMoViDa]. All the algorithms are implemented into DassFlow software (Fortran, MPI, adjoint) [Da]. [CoMaMoViDa] F. Couderc, R. Madec, J. Monnier, J.-P. Vila, D. Dartus. "Sensitivity analysis and variational data assimilation for geophysical shallow water flows". Submitted. [Da] DassFlow - Data Assimilation for Free Surface Flows. Open-source computational software http://www-gmm.insa-toulouse.fr/~monnier/DassFlow/ [HoLaMoPu] R. Hostache, X. Lai, J. Monnier, C. Puech. "Assimilation of spatial
The combined effect of attraction and orientation zones in 2D flocking models
NASA Astrophysics Data System (ADS)
Iliass, Tarras; Cambui, Dorilson
2016-01-01
In nature, many animal groups, such as fish schools or bird flocks, clearly display structural order and appear to move as a single coherent entity. In order to understand the complex motion of these systems, we study the Vicsek model of self-propelled particles (SPP) which is an important tool to investigate the behavior of collective motion of live organisms. This model reproduces the biological behavior patterns in the two-dimensional (2D) space. Within the framework of this model, the particles move with the same absolute velocity and interact locally in the zone of orientation by trying to align their direction with that of the neighbors. In this paper, we model the collective movement of SPP using an agent-based model which follows biologically motivated behavioral rules, by adding a second region called the attraction zone, where each particles move towards each other avoiding being isolated. Our main goal is to present a detailed numerical study on the effect of the zone of attraction on the kinetic phase transition of our system. In our study, the consideration of this zone seems to play an important role in the cohesion. Consequently, in the directional orientation, the zone that we added forms the compact particle group. In our simulation, we show clearly that the model proposed here can produce two collective behavior patterns: torus and dynamic parallel group. Implications of these findings are discussed.
Coronary arteries motion modeling on 2D x-ray images
NASA Astrophysics Data System (ADS)
Gao, Yang; Sundar, Hari
2012-02-01
During interventional procedures, 3D imaging modalities like CT and MRI are not commonly used due to interference with the surgery and radiation exposure concerns. Therefore, real-time information is usually limited and building models of cardiac motion are difficult. In such case, vessel motion modeling based on 2-D angiography images become indispensable. Due to issues with existing vessel segmentation algorithms and the lack of contrast in occluded vessels, manual segmentation of certain branches is usually necessary. In addition, such occluded branches are the most important vessels during coronary interventions and obtaining motion models for these can greatly help in reducing the procedure time and radiation exposure. Segmenting different cardiac phases independently does not guarantee temporal consistency and is not efficient for occluded branches required manual segmentation. In this paper, we propose a coronary motion modeling system which extracts the coronary tree for every cardiac phase, maintaining the segmentation by tracking the coronary tree during the cardiac cycle. It is able to map every frame to the specific cardiac phase, thereby inferring the shape information of the coronary arteries using the model corresponding to its phase. Our experiments show that our motion modeling system can achieve promising results with real-time performance.
2-D modeling of laterally acoustically coupled thin film bulk acoustic wave resonator filters.
Pensala, Tuomas; Meltaus, Johanna; Kokkonen, Kimmo; Ylilammi, Markku
2010-11-01
A 2-D model is developed for calculating lateral acoustical coupling between adjacent thin film BAW resonators forming an electrical N-port. The model is based on solution and superposition of lateral eigenmodes and eigenfrequencies in a structure consisting of adjacent regions with known plate wave dispersion properties. Mechanical and electrical response of the device are calculated as a superposition of eigenmodes according to voltage drive at one electrical port at a time while extracting current induced in the other ports, leading to a full Y-parameter description of the device. Exemplary cases are simulated to show the usefulness of the model in the study of the basic design rules of laterally coupled thin film BAW resonator filters. Model predictions are compared to an experimental 1.9-GHz band-pass filter based on aluminum nitride thin film technology and lateral acoustical coupling. Good agreement is obtained in prediction of passband behavior. The eigenmode-based model forms a useful tool for fast simulation of laterally coupled acoustic devices. It allows one to gain insight into basic device physics in a very intuitive fashion compared with more detailed but heavier finite element method. Shortcomings of this model and possible improvements are discussed. PMID:21041141
Models Ion Trajectories in 2D and 3D Electrostatic and Magnetic Fields
2000-02-21
SIMION3D7.0REV is a C based ion optics simulation program that can model complex problems using Laplace equation solutions for potential fields. The program uses an ion optics workbench that can hold up to 200 2D and/or 3D electrostatic/magnetic potential arrays. Arrays can have up to 50,000,000 points. SIMION3D7.0''s 32 bit virtual Graphics User Interface provides a highly interactive advanced user environment. All potential arrays are visualized as 3D objects that the user can cut awaymore » to inspect ion trajectories and potential energy surfaces. User programs allow the user to customize the program for specific simulations. A geometry file option supports the definition of highly complex array geometry. Algorithm modifications have improved this version''s computational speed and accuracy.« less
Surface delta interaction in the g7/2 - d5/2 model space
NASA Astrophysics Data System (ADS)
Yu, Xiaofei; Zamick, Larry
2016-05-01
Using an attractive surface delta interaction we obtain wave functions for 2 neutrons (or neutron holes) in the g7/2 -d5/2 model space. If we take the single particle energies to be degenerate we find that the g factors for I = 2 , 4 and 6 are all the same G (J) =gl, the orbital g factor of the nucleon. For a free neutron gl = 0, so in this case all 2 particles or 2 holes' g factors are equal to zero. Only the orbital part of the g-factors contributes - the spin part cancels out. We then consider the effects of introducing a single energy splitting between the 2 orbits. We make a linear approximation for all other n values.
3D prostate boundary segmentation from ultrasound images using 2D active shape models.
Hodge, Adam C; Ladak, Hanif M
2006-01-01
Boundary outlining, or segmentation, of the prostate is an important task in diagnosis and treatment planning for prostate cancer. This paper describes an algorithm for semi-automatic, three-dimensional (3D) segmentation of the prostate boundary from ultrasound images based on two-dimensional (2D) active shape models (ASM) and rotation-based slicing. Evaluation of the algorithm used distance- and volume-based error metrics to compare algorithm generated boundary outlines to gold standard (manually generated) boundary outlines. The mean absolute distance between the algorithm and gold standard boundaries was 1.09+/-0.49 mm, the average percent absolute volume difference was 3.28+/-3.16%, and a 5x speed increase as compared manual planimetry was achieved. PMID:17946106
Optical fiber poling by induction: analysis by 2D numerical modeling.
De Lucia, F; Huang, D; Corbari, C; Healy, N; Sazio, P J A
2016-04-15
Since their first demonstration some 25 years ago, thermally poled silica fibers have been used to realize device functions such as electro-optic modulation, switching, polarization-entangled photons, and optical frequency conversion with a number of advantages over bulk free-space components. We have recently developed an innovative induction poling technique that could allow for the development of complex microstructured fiber geometries for highly efficient χ^{(2)}-based device applications. To systematically implement these more advanced poled fiber designs, we report here the development of comprehensive numerical models of the induction poling mechanism itself via two-dimensional (2D) simulations of ion migration and space-charge region formation using finite element analysis. PMID:27082323
Models Ion Trajectories in 2D and 3D Electrostatic and Magnetic Fields
Dahl, David
2000-02-21
SIMION3D7.0REV is a C based ion optics simulation program that can model complex problems using Laplace equation solutions for potential fields. The program uses an ion optics workbench that can hold up to 200 2D and/or 3D electrostatic/magnetic potential arrays. Arrays can have up to 50,000,000 points. SIMION3D7.0''s 32 bit virtual Graphics User Interface provides a highly interactive advanced user environment. All potential arrays are visualized as 3D objects that the user can cut away to inspect ion trajectories and potential energy surfaces. User programs allow the user to customize the program for specific simulations. A geometry file option supports the definition of highly complex array geometry. Algorithm modifications have improved this version''s computational speed and accuracy.
Robust autonomous model learning from 2D and 3D data sets.
Langs, Georg; Donner, René; Peloschek, Philipp; Bischof, Horst
2007-01-01
In this paper we propose a weakly supervised learning algorithm for appearance models based on the minimum description length (MDL) principle. From a set of training images or volumes depicting examples of an anatomical structure, correspondences for a set of landmarks are established by group-wise registration. The approach does not require any annotation. In contrast to existing methods no assumptions about the topology of the data are made, and the topology can change throughout the data set. Instead of a continuous representation of the volumes or images, only sparse finite sets of interest points are used to represent the examples during optimization. This enables the algorithm to efficiently use distinctive points, and to handle texture variations robustly. In contrast to standard elasticity based deformation constraints the MDL criterion accounts for systematic deformations typical for training sets stemming from medical image data. Experimental results are reported for five different 2D and 3D data sets. PMID:18051152
Calibration Of 2D Hydraulic Inundation Models In The Floodplain Region Of The Lower Tagus River
NASA Astrophysics Data System (ADS)
Pestanana, R.; Matias, M.; Canelas, R.; Araujo, A.; Roque, D.; Van Zeller, E.; Trigo-Teixeira, A.; Ferreira, R.; Oliveira, R.; Heleno, S.
2013-12-01
In terms of inundated area, the largest floods in Portugal occur in the Lower Tagus River. On average, the river overflows every 2.5 years, at times blocking roads and causing important agricultural damages. This paper focus on the calibration of 2D-horizontal flood simulation models for the floods of 2001 and 2006 on a 70-km stretch of the Lower Tagus River. Flood extent maps, derived from ERS SAR and ENVISAT ASAR imagery were compared with the flood extent maps obtained for each simulation, to calibrate roughness coefficients. The combination of the calibration results from the 2001 and 2006 floods provided a preliminary Manning coefficient map of the study area.
Universality Class of the Nishimori Point in the 2D +/-J Random-Bond Ising Model
NASA Astrophysics Data System (ADS)
Honecker, A.; Picco, M.; Pujol, P.
2001-07-01
We study the universality class of the Nishimori point in the 2D +/-J random-bond Ising model by means of the numerical transfer-matrix method. Using the domain-wall free energy, we locate the position of the fixed point along the Nishimori line at the critical concentration value pc = 0.1094+/-0.0002 and estimate ν = 1.33+/-0.03. Then, we obtain the exponents for the moments of the spin-spin correlation functions as well as the value for the central charge c = 0.464+/-0.004. The main qualitative result is the fact that percolation is now excluded as a candidate for describing the universality class of this fixed point.
Universality class of the Nishimori point in the 2D +/- J random-bond Ising model.
Honecker, A; Picco, M; Pujol, P
2001-07-23
We study the universality class of the Nishimori point in the 2D +/- J random-bond Ising model by means of the numerical transfer-matrix method. Using the domain-wall free energy, we locate the position of the fixed point along the Nishimori line at the critical concentration value p(c) = 0.1094 +/- 0.0002 and estimate nu = 1.33 +/- 0.03. Then, we obtain the exponents for the moments of the spin-spin correlation functions as well as the value for the central charge c = 0.464 +/- 0.004. The main qualitative result is the fact that percolation is now excluded as a candidate for describing the universality class of this fixed point. PMID:11461639
Structure-approximating inverse protein folding problem in the 2D HP model.
Gupta, Arvind; Manuch, Ján; Stacho, Ladislav
2005-12-01
The inverse protein folding problem is that of designing an amino acid sequence which has a particular native protein fold. This problem arises in drug design where a particular structure is necessary to ensure proper protein-protein interactions. In this paper, we show that in the 2D HP model of Dill it is possible to solve this problem for a broad class of structures. These structures can be used to closely approximate any given structure. One of the most important properties of a good protein (in drug design) is its stability--the aptitude not to fold simultaneously into other structures. We show that for a number of basic structures, our sequences have a unique fold. PMID:16379538
An application of the distributed hydrologic model CASC2D to a tropical montane watershed
NASA Astrophysics Data System (ADS)
Marsik, Matt; Waylen, Peter
2006-11-01
SummaryIncreased stormflow in the Quebrada Estero watershed (2.5 km 2), in the northwestern Central Valley tectonic depression of Costa Rica, reportedly has caused flooding of the city of San Ramón in recent decades. Although scientifically untested, urban expansion was deemed the cause and remedial measures were recommended by the Programa de Investigación en Desarrollo Humano Sostenible (ProDUS). CASC2D, a physically-based, spatially explicit hydrologic model, was constructed and calibrated to a June 10th 2002 storm that delivered 110.5 mm of precipitation in 4.5 h visibly exceeded the bankfull stage (0.9 m) of the Quebrada flooding portions of San Ramón. The calibrated hydrograph showed a peak discharge 16.68% (2.5 m 3 s -1) higher, an above flood stage duration 20% shorter, and time to peak discharge 11 min later than the same observed discharge hydrograph characteristics. Simulations of changing land cover conditions from 1979 to 1999 showed an increase also in the peak discharge, above flood stage duration, and time to peak discharge. Analysis using a modified location quotient identified increased urbanization in lower portions of the watershed over the time period studied. These results suggest that increased urbanization in the Quebrada Estero watershed have increased flooding peaks, and durations above threshold, confirming the ProDUS report. These results and the CASC2D model offer an easy-to-use, pragmatic planning tool for policymakers in San Ramón to assess future development scenarios and their potential flooding impacts to San Ramón.
2D Distinct Element Method (DEM) models of the initiation, propagation and saturation of rock joints
NASA Astrophysics Data System (ADS)
Arslan, A.; Schöpfer, M. P.; Walsh, J. J.; Childs, C.
2009-12-01
In layered sequences, rock joints usually best develop within the more brittle layers and commonly display a regular spacing that scales with layer thickness. A variety of conceptual and mechanical models have been developed for these observations. A limitation of previous approaches, however, is that fracture initiation and associated interface slip are not explicitly simulated; instead, fractures were predefined and interfaces were welded. To surmount this problem, we have modelled the formation and growth of joints in layered sequences by using the two-dimensional Distinct Element Method (DEM) as implemented in the Particle Flow Code (PFC-2D). In PFC-2D, rock is represented by an assemblage of circular particles that are bonded at particle-particle contacts. Failure occurs if either the tensile or shear strength of a bond is exceeded. The models comprise a central brittle layer with high Young’s modulus, which is embedded in a low Young’s modulus matrix. The interfaces between the layers are defined by ‘smooth joint’ contacts, a modelling feature that eliminates interparticle bumpiness and associated interlocking friction. Consequently, this feature allows the user to assign macroscopic properties such as friction and cohesion along layer interfaces in a controlled manner. Layer parallel extension is applied by assigning a velocity to particles at the lateral boundaries of the model while maintaining a constant vertical confining pressure. Models were extended until joint saturation in the central layer was reached. We thereby explored the impact of confining pressure and interface properties (friction, cohesion) on joint spacing. A number of important conclusions can be drawn from our models: (i) The distributions of average horizontal normal stress within the layer and of shear stress at the interface are consistent with analytical solutions (stress-transfer theory). (ii) At low interfacial shear strength, new joints form preferentially midway between
Assessment of the Impacts of Compensation Flow Changes Upon Instream Habitat Using 2D Modelling
NASA Astrophysics Data System (ADS)
Mould, D. C.; Lane, S. N.; Christmas, M.
2004-05-01
Many millstone-grit rivers in northern England are impounded. In such cases the water company in the area has to release compensation flows from the reservoirs, traditionally to meet industrial needs: these flows are rarely set with ecology in mind; and have commonly involved constant flow. Dam overtopping may create spates, but spawning in many fish species is prompted by a spate flow in the early autumn when dams are rarely full enough to overtop. Such flows are important for fine sediment flushing and controlling the wetted useable area for spawning. Classical physical habitat modelling for instream habitat has been largely reliant upon 1D approaches, such as the Instream Flow Incremental Methodology (IFIM). Here we use a 2D finite element model (FESWMS), to simulate changes in instream habitat with variations in the compensation flow regimes. The spatial resolution of 2D models can be adapted to the scale of fish habitats so providing better representation of the reach-scale flow processes (such as slack water in the margins, wetting and drying) than the 1D case. The model is applied to the Rivers Rivelin and Loxley in Sheffield, Northern England. At the confluence of the two rivers, the compensation flow level is set at 30.6 Thousand Cubic Metres per Day (TCMD). Due to historical reasons, the compensation is not divided equally, as the Loxley receives 28 TCMD whilst the Rivelin receives only 2.6 TCMD. The model is used to simulate a transfer of 6 TCMD from the Loxley to the Rivelin. After validation, model predictions are combined with available habitat requirement data (e.g. velocity and depth needs) to develop an index of change in habitat suitability in terms of first order variables (e.g. velocity, depth and wetted useable area). This suggests that the change in compensation may significantly improve instream ecology in relation to macroinvertebrates, brown trout (Salmo trutta) and bullhead (Cottus gobio) in the Rivelin without causing detrimental impacts
Spin Circuit Model for Spin Orbit Torques in 2D Channels
NASA Astrophysics Data System (ADS)
Hong, Seokmin
2015-03-01
Recently, the unique coupling between charge and spin in topological insulators has been explored through various types of electrical measurements, which could have interesting applications. In this talk, we present a spin circuit model for spin orbit torques in topological insulator surface states and other 2D channels. We show with a simple example that results from the circuit model agree well with those obtained from nonequilibrium Green's function (NEGF) based quantum transport simulation. Some predictions of our model have already received experimental support and we hope this model can provide a unifying framework that can be used to critically evaluate experimental results, to explore new types of devices as well as to answer fundamental questions regarding these materials. The model for spin-orbit torques described here can be incorporated into a broader spin-circuit approach which, we believe, provides a natural platform for multi-physics, multi-component spintronic devices. This work was supported by FAME, a Semiconductor Research Corporation program sponsored by MARCO and DARPA.
Spin Circuit Model for 2D Channels with Spin-Orbit Coupling
Hong, Seokmin; Sayed, Shehrin; Datta, Supriyo
2016-01-01
In this paper we present a general theory for an arbitrary 2D channel with “spin momentum locking” due to spin-orbit coupling. It is based on a semiclassical model that classifies all the channel electronic states into four groups based on the sign of the z-component of the spin (up (U), down (D)) and the sign of the x-component of the velocity (+, −). This could be viewed as an extension of the standard spin diffusion model which uses two separate electrochemical potentials for U and D states. Our model uses four: U+, D+, U−, and D−. We use this formulation to develop an equivalent spin circuit that is also benchmarked against a full non-equilibrium Green’s function (NEGF) model. The circuit representation can be used to interpret experiments and estimate important quantities of interest like the charge to spin conversion ratio or the maximum spin current that can be extracted. The model should be applicable to topological insulator surface states with parallel channels as well as to other layered structures with interfacial spin-orbit coupling. PMID:26932563
Thermochemical Nonequilibrium 2D Modeling of Nitrogen Inductively Coupled Plasma Flow
NASA Astrophysics Data System (ADS)
Yu, Minghao; Yusuke, Takahashi; Hisashi, Kihara; Ken-ichi, Abe; Kazuhiko, Yamada; Takashi, Abe; Satoshi, Miyatani
2015-09-01
Two-dimensional (2D) numerical simulations of thermochemical nonequilibrium inductively coupled plasma (ICP) flows inside a 10-kW inductively coupled plasma wind tunnel (ICPWT) were carried out with nitrogen as the working gas. Compressible axisymmetric Navier-Stokes (N-S) equations coupled with magnetic vector potential equations were solved. A four-temperature model including an improved electron-vibration relaxation time was used to model the internal energy exchange between electron and heavy particles. The third-order accuracy electron transport properties (3rd AETP) were applied to the simulations. A hybrid chemical kinetic model was adopted to model the chemical nonequilibrium process. The flow characteristics such as thermal nonequilibrium, inductive discharge, effects of Lorentz force were made clear through the present study. It was clarified that the thermal nonequilibrium model played an important role in properly predicting the temperature field. The prediction accuracy can be improved by applying the 3rd AETP to the simulation for this ICPWT. supported by Grant-in-Aid for Scientific Research (No. 23560954), sponsored by the Japan Society for the Promotion of Science
Incorporating a Turbulence Transport Model into 2-D Hybrid Hall Thruster Simulations
NASA Astrophysics Data System (ADS)
Cha, Eunsun; Cappelli, Mark A.; Fernandez, Eduardo
2014-10-01
2-D hybrid simulations of Hall plasma thrusters that do not resolve cross-field transport-generating fluctuations require a model to capture how electrons migrate across the magnetic field. We describe the results of integrating a turbulent electron transport model into simulations of plasma behavior in a plane spanned by the E and B field vectors. The simulations treat the electrons as a fluid and the heavy species (ions/neutrals) as discrete particles. The transport model assumes that the turbulent eddy cascade in the electron fluid to smaller scales is the primary means of electron energy dissipation. Using this model, we compare simulations to experimental measurements made on a laboratory Hall discharge over a range of discharge voltage. Both the current-voltage trends as well as the plasma properties such as plasma temperature, electron density, and ion velocities seem agree favorably with experiments, where a simple Bohm transport model tends to perform poorly in capturing much of the discharge behavior.
Spin Circuit Model for 2D Channels with Spin-Orbit Coupling.
Hong, Seokmin; Sayed, Shehrin; Datta, Supriyo
2016-01-01
In this paper we present a general theory for an arbitrary 2D channel with "spin momentum locking" due to spin-orbit coupling. It is based on a semiclassical model that classifies all the channel electronic states into four groups based on the sign of the z-component of the spin (up (U), down (D)) and the sign of the x-component of the velocity (+, -). This could be viewed as an extension of the standard spin diffusion model which uses two separate electrochemical potentials for U and D states. Our model uses four: U+, D+, U-, and D-. We use this formulation to develop an equivalent spin circuit that is also benchmarked against a full non-equilibrium Green's function (NEGF) model. The circuit representation can be used to interpret experiments and estimate important quantities of interest like the charge to spin conversion ratio or the maximum spin current that can be extracted. The model should be applicable to topological insulator surface states with parallel channels as well as to other layered structures with interfacial spin-orbit coupling. PMID:26932563
Spin Circuit Model for 2D Channels with Spin-Orbit Coupling
NASA Astrophysics Data System (ADS)
Hong, Seokmin; Sayed, Shehrin; Datta, Supriyo
2016-03-01
In this paper we present a general theory for an arbitrary 2D channel with “spin momentum locking” due to spin-orbit coupling. It is based on a semiclassical model that classifies all the channel electronic states into four groups based on the sign of the z-component of the spin (up (U), down (D)) and the sign of the x-component of the velocity (+, -). This could be viewed as an extension of the standard spin diffusion model which uses two separate electrochemical potentials for U and D states. Our model uses four: U+, D+, U-, and D-. We use this formulation to develop an equivalent spin circuit that is also benchmarked against a full non-equilibrium Green’s function (NEGF) model. The circuit representation can be used to interpret experiments and estimate important quantities of interest like the charge to spin conversion ratio or the maximum spin current that can be extracted. The model should be applicable to topological insulator surface states with parallel channels as well as to other layered structures with interfacial spin-orbit coupling.
Field Evaluation of a Novel 2D Preferential Flow Snowpack Hydrology Model
NASA Astrophysics Data System (ADS)
Leroux, N.; Pomeroy, J. W.; Kinar, N. J.
2015-12-01
Accurate estimation of snowmelt flux is of primary importance for runoff hydrograph prediction, which is used for water management and flood forecasting. Lateral flows and preferential flow pathways in porous media flow have proven critical for improving soil and groundwater flow models, but though many physically-based layered snowmelt models have been developed, only 1D matrix flow is accounted for in these models. Therefore, there is a need for snowmelt models that include these processes so as to examine the potential to improve snowmelt hydrological modelling. A 2D model is proposed that enables an improved understanding of energy and water flows within deep heterogeneous snowpacks, including those on slopes. A dual pathway theory is presented that simulates the formation of preferential flow paths, vertical and lateral water flows through the snow matrix and flow fingers, internal energy fluxes, melt, wet snow metamorphism, and internal refreezing. The dual pathway model utilizes an explicit finite volume method to solve for the energy and water flux equations over a non-orthogonal grid. It was run and evaluated using in-situ data collected from snowpit - accessed gravimetric, thermometric, photographic, and dielectric observations and novel non-invasive acoustic observations of layering, temperature, flowpath geometry, density and wetness at the Fortress Mountain Snow Laboratory, Alberta, Canada. The melt of a natural snowpack was artificially generated after detailed observation of snowpack initial conditions such as snow layer properties, temperature, and liquid water content. Snowpack ablation and liquid water content distribution over time were then measured and used for model parameterization and validation. Energy available at the snow surface and soil slope angle were set as mondel inputs. Model verification was based on snowpack property evolution. The heterogeneous flow model can be an important tool to help understand snowmelt flow processes, how
NASA Astrophysics Data System (ADS)
Shen, D.; Wang, J.; Cheng, X.; Rui, Y.; Ye, S.
2015-02-01
The rapid progress of Light Detection And Ranging (LiDAR) technology has made acquirement and application of high-resolution digital elevation model (DEM) data increasingly popular, especially with regards to the study of floodplain flow modeling. High-resolution DEM data include many redundant interpolation points, needs a high amount of calculation, and does not match the size of computational mesh. These disadvantages are a common problem for floodplain flow modeling studies. Two-dimensional (2-D) hydraulic modeling, a popular method of analyzing floodplain flow, offers high precision of elevation parameterization for computational mesh while ignoring much micro-topographic information of the DEM data itself. We offer a flood simulation method that integrates 2-D hydraulic model results and high-resolution DEM data, enabling the calculation of flood water levels in DEM grid cells through local inverse distance weighted interpolation. To get rid of the false inundation areas during interpolation, it employs the run-length encoding method to mark the inundated DEM grid cells and determine the real inundation areas through the run-length boundary tracing technique, which solves the complicated problem of the connectivity between DEM grid cells. We constructed a 2-D hydraulic model for the Gongshuangcha polder, a flood storage area of Dongting Lake, using our integrated method to simulate the floodplain flow. The results demonstrate that this method can solve DEM associated problems efficiently and simulate flooding processes with greater accuracy than DEM only simulations.
A new model for two-dimensional numerical simulation of pseudo-2D gas-solids fluidized beds
Li, Tingwen; Zhang, Yongmin
2013-10-11
Pseudo-two dimensional (pseudo-2D) fluidized beds, for which the thickness of the system is much smaller than the other two dimensions, is widely used to perform fundamental studies on bubble behavior, solids mixing, or clustering phenomenon in different gas-solids fluidization systems. The abundant data from such experimental systems are very useful for numerical model development and validation. However, it has been reported that two-dimensional (2D) computational fluid dynamic (CFD) simulations of pseudo-2D gas-solids fluidized beds usually predict poor quantitative agreement with the experimental data, especially for the solids velocity field. In this paper, a new model is proposed to improve the 2D numerical simulations of pseudo-2D gas-solids fluidized beds by properly accounting for the frictional effect of the front and back walls. Two previously reported pseudo-2D experimental systems were simulated with this model. Compared to the traditional 2D simulations, significant improvements in the numerical predictions have been observed and the predicted results are in better agreement with the available experimental data.
A case study of fluid flow in fractured rock mass based on 2-D DFN modeling
NASA Astrophysics Data System (ADS)
Han, Jisu; Noh, Young-Hwan; Um, Jeong-Gi; Choi, Yosoon
2014-05-01
A two dimensional steady-state fluid flow through fractured rock mass of an abandoned copper mine in Korea is addressed based on discrete fracture network modeling. An injection well and three observation wells were installed at the field site to monitor the variations of total heads induced by injection of fresh water. A series of packer tests were performed to estimate the rock mass permeability. First, the two dimensional stochastic fracture network model was built and validated for a granitic rock mass using the geometrical and statistical data obtained from surface exposures and borehole logs. This validated fracture network model was combined with the fracture data observed on boreholes to generate a stochastic-deterministic fracture network system. Estimated apertures for each of the fracture sets using permeability data obtained from borehole packer tests were discussed next. Finally, a systematic procedure for fluid flow modeling in fractured rock mass in two dimensional domain was presented to estimate the conductance, flow quantity and nodal head in 2-D conceptual linear pipe channel network. The results obtained in this study clearly show that fracture geometry parameters (orientation, density and size) play an important role in the hydraulic behavior of fractured rock masses.
Distributed and coupled 2D electro-thermal model of power semiconductor devices
NASA Astrophysics Data System (ADS)
Belkacem, Ghania; Lefebvre, Stéphane; Joubert, Pierre-Yves; Bouarroudj-Berkani, Mounira; Labrousse, Denis; Rostaing, Gilles
2014-05-01
The development of power electronics in the field of transportations (automotive, aeronautics) requires the use of power semiconductor devices providing protection and diagnostic functions. In the case of series protections power semiconductor devices which provide protection may operate in shortcircuit and act as a current limiting device. This mode of operations is very constraining due to the large dissipation of power. In these particular conditions of operation, electro-thermal models of power semiconductor devices are of key importance in order to optimize their thermal design and increase their reliability. The development of such an electro-thermal model for power MOSFET transistors based on the coupling between two computation softwares (Matlab and Cast3M) is described in this paper. The 2D electro-thermal model is able to predict (i) the temperature distribution on chip surface well as in the volume under short-circuit operations, (ii) the effect of the temperature on the distribution of the current flowing within the die and (iii) the effects of the ageing of the metallization layer on the current density and the temperature. In this paper, the electrical and thermal models are described as well as the implemented coupling scheme.
Studies of Arctic stratospheric ozone in a 2-D model including some effects of zonal asymmetries
Isaksen, I.S.A.; Rognerud, B.; Stordal, F. ); Coffey, M.T.; Mankin, W.G. )
1990-03-01
A two-dimensional (2-D) zonally averaged chemistry-transport model of the stratosphere has been extended to include some zonally asymmetric effects to study the chemically disturbed conditions in the Arctic winter during the occurrence of polar stratospheric clouds (PSCs). The model allows air parcels that have been in PSCs in the polar night to be exposed to sunlight during the passage south through a wave trough. Large enhancements of ClO are estimated as well as significant ozone reductions, most pronounced around the 20 km height level. The ozone depletions maximize in late March, about one month after the cease in PSC activity in the model, and amount to 5-8% in column ozone at 70{degree}N. In agreement with column measurements made from the DC-8, the model estimates an increase in the columns of HNO{sub 3} and ClONO{sub 2}, and a decrease in the HCl column within the polar vortex.
LBQ2D, Extending the Line Broadened Quasilinear Model to TAE-EP Interaction
NASA Astrophysics Data System (ADS)
Ghantous, Katy; Gorelenkov, Nikolai; Berk, Herbert
2012-10-01
The line broadened quasilinear model was proposed and tested on the one dimensional electrostatic case of the bump on tailfootnotetextH.L Berk, B. Breizman and J. Fitzpatrick, Nucl. Fusion, 35:1661, 1995 to study the wave particle interaction. In conventional quasilinear theory, the sea of overlapping modes evolve with time as the particle distribution function self consistently undergo diffusion in phase space. The line broadened quasilinear model is an extension to the conventional theory in a way that allows treatment of isolated modes as well as overlapping modes by broadening the resonant line in phase space. This makes it possible to treat the evolution of modes self consistently from onset to saturation in either case. We describe here the model denoted by LBQ2D which is an extension of the proposed one dimensional line broadened quasilinear model to the case of TAEs interacting with energetic particles in two dimensional phase space, energy as well as canonical angular momentum. We study the saturation of isolated modes in various regimes and present the analytical derivation and numerical results. Finally, we present, using ITER parameters, the case where multiple modes overlap and describe the techniques used for the numerical treatment.
Obtaining instantaneous water levels relative to a geoid with a 2D storm surge model
NASA Astrophysics Data System (ADS)
Slobbe, D. C.; Verlaan, M.; Klees, R.; Gerritsen, H.
2013-01-01
Current and new applications of 2D storm surge models such as the Dutch Continental Shelf Model (DCSM) require that the models provide proper estimates of the instantaneous water levels expressed relative to a particular geoid, rather than only the tide and surge components expressed relative to the ill-defined model's zero height surface. For DCSM, this is realized by adding the depth-averaged horizontal baroclinic pressure gradients to the model equations, which are derived from 4D salinity and temperature fields provided by the Proudman Oceanographic Laboratory hydrodynamic model (POL's hindcast). The vertical datum of the extended model is fixed to that of the European Gravimetric Geoid model 2008 (EGG08). This is done by an adjustment of the model parameters that depend on the choice of the reference surface (e.g., bathymetry) and by referring the water levels along the open boundaries to this reference surface. Using different numerical experiments we investigate the effects on the water levels of several approximations we have made during the implementation. The ability of the model to reproduce both the mean sea level (MSL) and instantaneous water levels is assessed by a comparison with the MSL derived from POL's hindcast as well as with instantaneous water levels acquired by various radar altimeter satellites. From this comparison we conclude that our modeled MSL is in good agreement with the MSL derived from POL's hindcast; the standard deviation of the differences is below 2 cm. However, larger differences in MSL are observed when comparing the model output with the MSL derived from radar altimeter data. They are attributed to either geoid errors or errors in the used salinity and temperature fields. The root mean squared (rms) differences between observed and modeled instantaneous water levels over the entire model domain varies from 9 cm for data acquired by the TOPEX satellite to 11 cm for data acquired by the GFO-1 satellite. These numbers improve to
A New 2D-Advection-Diffusion Model Simulating Trace Gas Distributions in the Lowermost Stratosphere
NASA Astrophysics Data System (ADS)
Hegglin, M. I.; Brunner, D.; Peter, T.; Wirth, V.; Fischer, H.; Hoor, P.
2004-12-01
Tracer distributions in the lowermost stratosphere are affected by both, transport (advective and non-advective) and in situ sources and sinks. They influence ozone photochemistry, radiative forcing, and heating budgets. In-situ measurements of long-lived species during eight measurement campaigns revealed relatively simple behavior of the tracers in the lowermost stratosphere when represented in an equivalent-latitude versus potential temperature framework. We here present a new 2D-advection-diffusion model that simulates the main transport pathways influencing the tracer distributions in the lowermost stratosphere. The model includes slow diabatic descent of aged stratospheric air and vertical and/or horizontal diffusion across the tropopause and within the lowermost stratosphere. The diffusion coefficients used in the model represent the combined effects of different processes with the potential of mixing tropospheric air into the lowermost stratosphere such as breaking Rossby and gravity waves, deep convection penetrating the tropopause, turbulent diffusion, radiatively driven upwelling etc. They were specified by matching model simulations to observed distributions of long-lived trace gases such as CO and N2O obtained during the project SPURT. The seasonally conducted campaigns allow us to study the seasonal dependency of the diffusion coefficients. Despite its simplicity the model yields a surprisingly good description of the small scale features of the measurements and in particular of the observed tracer gradients at the tropopause. The correlation coefficients between modeled and measured trace gas distributions were up to 0.95. Moreover, mixing across isentropes appears to be more important than mixing across surfaces of constant equivalent latitude (or PV). With the aid of the model, the distribution of the fraction of tropospheric air in the lowermost stratosphere can be determined.
Transectional heat transfer in thermoregulating bigeye tuna (Thunnus obesus) - a 2D heat flux model.
Boye, Jess; Musyl, Michael; Brill, Richard; Malte, Hans
2009-11-01
We developed a 2D heat flux model to elucidate routes and rates of heat transfer within bigeye tuna Thunnus obesus Lowe 1839 in both steady-state and time-dependent settings. In modeling the former situation, we adjusted the efficiencies of heat conservation in the red and the white muscle so as to make the output of the model agree as closely as possible with observed cross-sectional isotherms. In modeling the latter situation, we applied the heat exchanger efficiencies from the steady-state model to predict the distribution of temperature and heat fluxes in bigeye tuna during their extensive daily vertical excursions. The simulations yielded a close match to the data recorded in free-swimming fish and strongly point to the importance of the heat-producing and heat-conserving properties of the white muscle. The best correspondence between model output and observed data was obtained when the countercurrent heat exchangers in the blood flow pathways to the red and white muscle retained 99% and 96% (respectively) of the heat produced in these tissues. Our model confirms that the ability of bigeye tuna to maintain elevated muscle temperatures during their extensive daily vertical movements depends on their ability to rapidly modulate heating and cooling rates. This study shows that the differential cooling and heating rates could be fully accounted for by a mechanism where blood flow to the swimming muscles is either exclusively through the heat exchangers or completely shunted around them, depending on the ambient temperature relative to the body temperature. Our results therefore strongly suggest that such a mechanism is involved in the extensive physiological thermoregulatory abilities of endothermic bigeye tuna. PMID:19880733
Comparing a 2D fluid model of the DC planar magnetron cathode to experiments
Garcia, M.
1996-05-01
Planar magnetron cathodes have arching magnetic field lines which concentrate plasma density near the electrode surface. This enhances the ion bombardment of the surface and the yield of sputtered atoms. Magnetron cathodes are used in the Plasma Electrode Pockels Cell (PEPC) devices of the Laser Program because they provide for significantly higher conduction than do glow discharges. An essential feature of magnetron cathodes is that the vector product of the perpendicular electric field, E[sub y], with the parallel component of the magnetic field, B[sub x], forms a closed track with a circulating current along the cathode surface. An analytical, 2D, two component, quasi-neutral, continuum model yields formulas for the plasma density, the total and component current densities, the electric field, and the positive electrical potential, between the cathode surface and a distant, uniform plasma. For a specific gas, the free parameters are electron temperature, gas number density, and total current. The model is applied to the interpretation of experimental data from the PEPC device, as well as a small vacuum facility for testing magnetron cathodes. Finally, the model has been applied to generate cross sectional views of a PEPC magnetron cathode track.
Doubled CO2 Effects on NO(y) in a Coupled 2D Model
NASA Technical Reports Server (NTRS)
Rosenfield, J. E.; Douglass, A. R.
1998-01-01
Changes in temperature and ozone have been the main focus of studies of the stratospheric impact of doubled CO2. Increased CO2 is expected to cool the stratosphere, which will result in increases in stratospheric ozone through temperature dependent loss rates. Less attention has been paid to changes in minor constituents which affect the O3 balance and which may provide additional feedbacks. Stratospheric NO(y) fields calculated using the GSFC 2D interactive chemistry-radiation-dynamics model show significant sensitivity to the model CO2. Modeled upper stratospheric NO(y) decreases by about 15% in response to CO2 doubling, mainly due to the temperature decrease calculated to result from increased cooling. The abundance of atomic nitrogen, N, increases because the rate of the strongly temperature dependent reaction N + O2 yields NO + O decreases at lower temperatures. Increased N leads to an increase in the loss of NO(y) which is controlled by the reaction N + NO yields N2 + O. The NO(y) reduction is shown to be sensitive to the NO photolysis rate. The decrease in the O3 loss rate due to the NO(y) changes is significant when compared to the decrease in the O3 loss rate due to the temperature changes.
Simulation of abrasive flow machining process for 2D and 3D mixture models
NASA Astrophysics Data System (ADS)
Dash, Rupalika; Maity, Kalipada
2015-12-01
Improvement of surface finish and material removal has been quite a challenge in a finishing operation such as abrasive flow machining (AFM). Factors that affect the surface finish and material removal are media viscosity, extrusion pressure, piston velocity, and particle size in abrasive flow machining process. Performing experiments for all the parameters and accurately obtaining an optimized parameter in a short time are difficult to accomplish because the operation requires a precise finish. Computational fluid dynamics (CFD) simulation was employed to accurately determine optimum parameters. In the current work, a 2D model was designed, and the flow analysis, force calculation, and material removal prediction were performed and compared with the available experimental data. Another 3D model for a swaging die finishing using AFM was simulated at different viscosities of the media to study the effects on the controlling parameters. A CFD simulation was performed by using commercially available ANSYS FLUENT. Two phases were considered for the flow analysis, and multiphase mixture model was taken into account. The fluid was considered to be a
Complex 2D matrix model and geometrical map on the complex-Nc plane
NASA Astrophysics Data System (ADS)
Nawa, Kanabu; Ozaki, Sho; Nagahiro, Hideko; Jido, Daisuke; Hosaka, Atsushi
2013-08-01
We study the parameter dependence of the internal structure of resonance states by formulating a complex two-dimensional (2D) matrix model, where the two dimensions represent two levels of resonances. We calculate a critical value of the parameter at which a "nature transition" with character exchange occurs between two resonance states, from the viewpoint of geometry on complex-parameter space. Such a critical value is useful for identifying the internal structure of resonance states with variation of the parameter in the system. We apply the model to analyze the internal structure of hadrons with variation of the color number N_c from infty to a realistic value 3. By regarding 1/N_c as the variable parameter in our model, we calculate a critical color number of the nature transition between hadronic states in terms of a quark-antiquark pair and a mesonic molecule as exotics from the geometry on the complex-N_c plane. For large-N_c effective theory, we employ the chiral Lagrangian induced by holographic QCD with a D4/D8/overline {D8} multi-D brane system in type IIA superstring theory.
Field-induced magnetization jumps and quantum criticality in the 2D J-Q model
NASA Astrophysics Data System (ADS)
Iaizzi, Adam; Sandvik, Anders
The J-Q model is a `designer hamiltonian' formed by adding a four spin `Q' term to the standard antiferromagnetic S = 1 / 2 Heisenberg model. The Q term drives a quantum phase transition to a valence-bond solid (VBS) state: a non-magnetic state with a pattern of local singlets which breaks lattice symmetries. The elementary excitations of the VBS are triplons, i.e. gapped S=1 quasiparticles. There is considerable interest in the quantum phase transition between the Néel and VBS states as an example of deconfined quantum criticality. Near the phase boundary, triplons deconfine into pairs of bosonic spin-1/2 excitations known as spinons. Using exact diagonalization and the stochastic series expansion quantum monte carlo method, we study the 2D J-Q model in the presence of an external magnetic field. We use the field to force a nonzero density of magnetic excitations at T=0 and look for signatures of Bose-Einstein condensation of spinons. At higher magnetic fields, there is a jump in the induced magnetization caused by the onset of an effective attractive interaction between magnons on a ferromagnetic background. We characterize the first order quantum phase transition and determine the minimum value of the coupling ratio q ≡ Q / J required to produce this jump. Funded by NSF DMR-1410126.
2d Affine XY-Spin Model/4d Gauge Theory Duality and Deconfinement
Anber, Mohamed M.; Poppitz, Erich; Unsal, Mithat; /SLAC /Stanford U., Phys. Dept. /San Francisco State U.
2012-08-16
We introduce a duality between two-dimensional XY-spin models with symmetry-breaking perturbations and certain four-dimensional SU(2) and SU(2) = Z{sub 2} gauge theories, compactified on a small spatial circle R{sup 1,2} x S{sup 1}, and considered at temperatures near the deconfinement transition. In a Euclidean set up, the theory is defined on R{sup 2} x T{sup 2}. Similarly, thermal gauge theories of higher rank are dual to new families of 'affine' XY-spin models with perturbations. For rank two, these are related to models used to describe the melting of a 2d crystal with a triangular lattice. The connection is made through a multi-component electric-magnetic Coulomb gas representation for both systems. Perturbations in the spin system map to topological defects in the gauge theory, such as monopole-instantons or magnetic bions, and the vortices in the spin system map to the electrically charged W-bosons in field theory (or vice versa, depending on the duality frame). The duality permits one to use the two-dimensional technology of spin systems to study the thermal deconfinement and discrete chiral transitions in four-dimensional SU(N{sub c}) gauge theories with n{sub f} {ge} 1 adjoint Weyl fermions.
Prominence fine-structure dynamics as inferred from 2D non-LTE models
NASA Astrophysics Data System (ADS)
Gunar, Stanislav; Schmieder, Brigitte; Mein, Pierre; Heinzel, Petr
2012-07-01
2D multi-thread prominence fine structure models are able to produce synthetic Lyman spectra in very good agreement with spectral observations by SOHO/SUMER including the spectral line asymmetries. The synthetic differential emission measure curves derived from these models are also in a good agreement with observations. Now we show that these models are also able to produce synthetic H-alpha line profiles in very good agreement with observations which allows us to analyze not only the physical parameters of the prominence fine-structure plasma but also some aspects of its dynamical behaviour. We compare the synthetic H-alpha spectra with the observed spectra of the April 26, 2007 prominence using three statistical parameters: the line integrated intensity, the line full-width at the half-maximum (FWHM), and the Doppler velocity derived from shifts of the line profiles. This statistical analysis allows us to conclude that the overall statistical distribution of the LOS velocities in the April 26, 2007 prominence at the time of the observations was below +/-15 km/s and in the prominence core was close to +/-10 km/s. In combination with the analysis of the Lyman spectra we determine several physical parameters of the observed prominence fine structures which show that the April 26, 2007 prominence was relatively less massive. We are also able to put some constrains on the prominence core temperature that might be relatively low, reaching values below 6000 K.
Automatic 3D high-fidelity traffic interchange modeling using 2D road GIS data
NASA Astrophysics Data System (ADS)
Wang, Jie; Shen, Yuzhong
2011-03-01
3D road models are widely used in many computer applications such as racing games and driving simulations. However, almost all high-fidelity 3D road models were generated manually by professional artists at the expense of intensive labor. There are very few existing methods for automatically generating 3D high-fidelity road networks, especially for those existing in the real world. Real road network contains various elements such as road segments, road intersections and traffic interchanges. Among them, traffic interchanges present the most challenges to model due to their complexity and the lack of height information (vertical position) of traffic interchanges in existing road GIS data. This paper proposes a novel approach that can automatically produce 3D high-fidelity road network models, including traffic interchange models, from real 2D road GIS data that mainly contain road centerline information. The proposed method consists of several steps. The raw road GIS data are first preprocessed to extract road network topology, merge redundant links, and classify road types. Then overlapped points in the interchanges are detected and their elevations are determined based on a set of level estimation rules. Parametric representations of the road centerlines are then generated through link segmentation and fitting, and they have the advantages of arbitrary levels of detail with reduced memory usage. Finally a set of civil engineering rules for road design (e.g., cross slope, superelevation) are selected and used to generate realistic road surfaces. In addition to traffic interchange modeling, the proposed method also applies to other more general road elements. Preliminary results show that the proposed method is highly effective and useful in many applications.
Govind Rajan, Ananth; Warner, Jamie H; Blankschtein, Daniel; Strano, Michael S
2016-04-26
Transition metal dichalcogenides (TMDs) like molybdenum disulfide (MoS2) and tungsten disulfide (WS2) are layered materials capable of growth to one monolayer thickness via chemical vapor deposition (CVD). Such CVD methods, while powerful, are notoriously difficult to extend across different reactor types and conditions, with subtle variations often confounding reproducibility, particularly for 2D TMD growth. In this work, we formulate the first generalized TMD synthetic theory by constructing a thermodynamic and kinetic growth mechanism linked to CVD reactor parameters that is predictive of specific geometric shape, size, and aspect ratio from triangular to hexagonal growth, depending on specific CVD reactor conditions. We validate our model using experimental data from Wang et al. (Chem. Mater. 2014, 26, 6371-6379) that demonstrate the systemic evolution of MoS2 morphology down the length of a flow CVD reactor where variations in gas phase concentrations can be accurately estimated using a transport model (CSulfur = 9-965 μmol/m(3); CMoO3 = 15-16 mmol/m(3)) under otherwise isothermal conditions (700 °C). A stochastic model which utilizes a site-dependent activation energy barrier based on the intrinsic TMD bond energies and a series of Evans-Polanyi relations leads to remarkable, quantitative agreement with both shape and size evolution along the reactor. The model is shown to extend to the growth of WS2 at 800 °C and MoS2 under varied process conditions. Finally, a simplified theory is developed to translate the model into a "kinetic phase diagram" of the growth process. The predictive capability of this model and its extension to other TMD systems promise to significantly increase the controlled synthesis of such materials. PMID:26937889
2D dynamical magma propagation modeling: application to the 2001 Mount Etna eruption
NASA Astrophysics Data System (ADS)
Pinel, Virginie; Carrara, Alexandre; Maccaferri, Francesco; Rivalta, Eleonora; Corbi, Fabio
2016-04-01
Numerical and analog studies of dike propagation in a stress field induced by volcanic edifice construction have shown that surface loading tends both to attract the magma and to reduce its velocity. Available numerical models can either calculate the trajectory or the velocity of the ascending dikes, but not both of them simultaneously. We developed a hybrid model of dyke propagation in two dimensions solving both for the magma trajectory and velocity as a function of the source overpressure, the magma physical properties (density and viscosity) as well as the crustal density and stress field. We first calculate a dyke trajectory in 2D and secondly run a 1D dynamical model of dyke propagation along this trajectory taken into account the influence of the stress field seen by the magma along this path. This model is used to characterize the influence of surface load on magma migration towards the surface and compared to previous results obtained by analog modeling.We find that the amplitude of dyke deflection and magma velocity variation depend on the ratio between the dyke driving pressure (source overpressure as well buoyancy) and the stress field perturbation. Our model is then applied to the July 2001 eruption of Etna, where the final dyke deflection had been previously interpreted as due to the topographic load by Bonaccorso et al. [2010]. We show that the velocity decrease observed during the last stage of the propagation can also be attributed to the local stress field. We use the dyke propagation duration to estimate the magma overpressure at the dyke bottom to be less than 4 MPa.
Wu, Chao; Jiang, Xi-Ling; Shen, Hong-Wu; Yu, Ai-Ming
2009-01-01
Harmaline is a β-carboline alkaloid showing neuroprotective and neurotoxic properties. Our recent studies have revealed an important role for cytochrome P450 2D6 (CYP2D6) in harmaline O-demethylation. This study, therefore, aimed to delineate the effects of CYP2D6 phenotype/genotype on harmaline metabolism, pharmacokinetics (PK) and pharmacodynamics (PD), and to develop a pharmacogenetics mechanism-based compartmental PK model. In vitro kinetic studies on metabolite formation in human CYP2D6 extensive metabolizer (EM) and poor metabolizer (PM) hepatocytes indicated that harmaline O-demethylase activity (Vmax/Km) was about 9-fold higher in EM hepatocytes. Substrate depletion showed mono-exponential decay trait, and estimated in vitro harmaline clearance (CLint, μL/min/106 cells) was significantly lower in PM hepatocytes (28.5) than EM hepatocytes (71.1). In vivo studies in CYP2D6-humanized and wild-type mouse models showed that wild-type mice were subjected to higher and longer exposure to harmaline (5 and 15 mg/kg; i.v. and i.p.), and more severe hypothermic responses. The PK/PD data were nicely described by our pharmacogenetics-based PK model involving the clearance of drug by CYP2D6 (CLCYP2D6) and other mechanisms (CLother), and an indirect response PD model, respectively. Wild-type mice were also more sensitive to harmaline in marble-burying tests, as manifested by significantly lower ED50 and steeper Hill slope. These findings suggest that distinct CYP2D6 status may cause considerable variations in harmaline metabolism, PK and PD. In addition, the pharmacogenetics-based PK model may be extended to define PK difference caused by other polymorphic drug-metabolizing enzyme in different populations. PMID:19445902
On the assimilation of SWOT type data into 2D shallow-water models
NASA Astrophysics Data System (ADS)
Frédéric, Couderc; Denis, Dartus; Pierre-André, Garambois; Ronan, Madec; Jérôme, Monnier; Jean-Paul, Villa
2013-04-01
In river hydraulics, assimilation of water level measurements at gauging stations is well controlled, while assimilation of images is still delicate. In the present talk, we address the richness of satellite mapped information to constrain a 2D shallow-water model, but also related difficulties. 2D shallow models may be necessary for small scale modelling in particular for low-water and flood plain flows. Since in both cases, the dynamics of the wet-dry front is essential, one has to elaborate robust and accurate solvers. In this contribution we introduce robust second order, stable finite volume scheme [CoMaMoViDaLa]. Comparisons of real like tests cases with more classical solvers highlight the importance of an accurate flood plain modelling. A preliminary inverse study is presented in a flood plain flow case, [LaMo] [HoLaMoPu]. As a first step, a 0th order data processing model improves observation operator and produces more reliable water level derived from rough measurements [PuRa]. Then, both model and flow behaviours can be better understood thanks to variational sensitivities based on a gradient computation and adjoint equations. It can reveal several difficulties that a model designer has to tackle. Next, a 4D-Var data assimilation algorithm used with spatialized data leads to improved model calibration and potentially leads to identify river discharges. All the algorithms are implemented into DassFlow software (Fortran, MPI, adjoint) [Da]. All these results and experiments (accurate wet-dry front dynamics, sensitivities analysis, identification of discharges and calibration of model) are currently performed in view to use data from the future SWOT mission. [CoMaMoViDaLa] F. Couderc, R. Madec, J. Monnier, J.-P. Vila, D. Dartus, K. Larnier. "Sensitivity analysis and variational data assimilation for geophysical shallow water flows". Submitted. [Da] DassFlow - Data Assimilation for Free Surface Flows. Computational software http
MAST-2D diffusive model for flood prediction on domains with triangular Delaunay unstructured meshes
NASA Astrophysics Data System (ADS)
Aricò, C.; Sinagra, M.; Begnudelli, L.; Tucciarelli, T.
2011-11-01
A new methodology for the solution of the 2D diffusive shallow water equations over Delaunay unstructured triangular meshes is presented. Before developing the new algorithm, the following question is addressed: it is worth developing and using a simplified shallow water model, when well established algorithms for the solution of the complete one do exist? The governing Partial Differential Equations are discretized using a procedure similar to the linear conforming Finite Element Galerkin scheme, with a different flux formulation and a special flux treatment that requires Delaunay triangulation but entire solution monotonicity. A simple mesh adjustment is suggested, that attains the Delaunay condition for all the triangle sides without changing the original nodes location and also maintains the internal boundaries. The original governing system is solved applying a fractional time step procedure, that solves consecutively a convective prediction system and a diffusive correction system. The non linear components of the problem are concentrated in the prediction step, while the correction step leads to the solution of a linear system of the order of the number of computational cells. A semi-analytical procedure is applied for the solution of the prediction step. The discretized formulation of the governing equations allows to handle also wetting and drying processes without any additional specific treatment. Local energy dissipations, mainly the effect of vertical walls and hydraulic jumps, can be easily included in the model. Several numerical experiments have been carried out in order to test (1) the stability of the proposed model with regard to the size of the Courant number and to the mesh irregularity, (2) its computational performance, (3) the convergence order by means of mesh refinement. The model results are also compared with the results obtained by a fully dynamic model. Finally, the application to a real field case with a Venturi channel is presented.
Basic Brackets of a 2D Model for the Hodge Theory Without its Canonical Conjugate Momenta
NASA Astrophysics Data System (ADS)
Kumar, R.; Gupta, S.; Malik, R. P.
2016-06-01
We deduce the canonical brackets for a two (1+1)-dimensional (2D) free Abelian 1-form gauge theory by exploiting the beauty and strength of the continuous symmetries of a Becchi-Rouet-Stora-Tyutin (BRST) invariant Lagrangian density that respects, in totality, six continuous symmetries. These symmetries entail upon this model to become a field theoretic example of Hodge theory. Taken together, these symmetries enforce the existence of exactly the same canonical brackets amongst the creation and annihilation operators that are found to exist within the standard canonical quantization scheme. These creation and annihilation operators appear in the normal mode expansion of the basic fields of this theory. In other words, we provide an alternative to the canonical method of quantization for our present model of Hodge theory where the continuous internal symmetries play a decisive role. We conjecture that our method of quantization is valid for a class of field theories that are tractable physical examples for the Hodge theory. This statement is true in any arbitrary dimension of spacetime.
Learning structured models for segmentation of 2-D and 3-D imagery.
Lucchi, Aurelien; Marquez-Neila, Pablo; Becker, Carlos; Li, Yunpeng; Smith, Kevin; Knott, Graham; Fua, Pascal
2015-05-01
Efficient and accurate segmentation of cellular structures in microscopic data is an essential task in medical imaging. Many state-of-the-art approaches to image segmentation use structured models whose parameters must be carefully chosen for optimal performance. A popular choice is to learn them using a large-margin framework and more specifically structured support vector machines (SSVM). Although SSVMs are appealing, they suffer from certain limitations. First, they are restricted in practice to linear kernels because the more powerful nonlinear kernels cause the learning to become prohibitively expensive. Second, they require iteratively finding the most violated constraints, which is often intractable for the loopy graphical models used in image segmentation. This requires approximation that can lead to reduced quality of learning. In this paper, we propose three novel techniques to overcome these limitations. We first introduce a method to "kernelize" the features so that a linear SSVM framework can leverage the power of nonlinear kernels without incurring much additional computational cost. Moreover, we employ a working set of constraints to increase the reliability of approximate subgradient methods and introduce a new way to select a suitable step size at each iteration. We demonstrate the strength of our approach on both 2-D and 3-D electron microscopic (EM) image data and show consistent performance improvement over state-of-the-art approaches. PMID:25438309
T-duality without isometry via extended gauge symmetries of 2D sigma models
NASA Astrophysics Data System (ADS)
Chatzistavrakidis, Athanasios; Deser, Andreas; Jonke, Larisa
2016-01-01
Target space duality is one of the most profound properties of string theory. However it customarily requires that the background fields satisfy certain invariance conditions in order to perform it consistently; for instance the vector fields along the directions that T-duality is performed have to generate isometries. In the present paper we examine in detail the possibility to perform T-duality along non-isometric directions. In particular, based on a recent work of Kotov and Strobl, we study gauged 2D sigma models where gauge invariance for an extended set of gauge transformations imposes weaker constraints than in the standard case, notably the corresponding vector fields are not Killing. This formulation enables us to follow a procedure analogous to the derivation of the Buscher rules and obtain two dual models, by integrating out once the Lagrange multipliers and once the gauge fields. We show that this construction indeed works in non-trivial cases by examining an explicit class of examples based on step 2 nilmanifolds.
A computational model of the short-cut rule for 2D shape decomposition.
Luo, Lei; Shen, Chunhua; Liu, Xinwang; Zhang, Chunyuan
2015-01-01
We propose a new 2D shape decomposition method based on the short-cut rule. The short-cut rule originates from cognition research, and states that the human visual system prefers to partition an object into parts using the shortest possible cuts. We propose and implement a computational model for the short-cut rule and apply it to the problem of shape decomposition. The model we proposed generates a set of cut hypotheses passing through the points on the silhouette, which represent the negative minima of curvature. We then show that most part-cut hypotheses can be eliminated by analysis of local properties of each. Finally, the remaining hypotheses are evaluated in ascending length order, which guarantees that of any pair of conflicting cuts only the shortest will be accepted. We demonstrate that, compared with state-of-the-art shape decomposition methods, the proposed approach achieves decomposition results, which better correspond to human intuition as revealed in psychological experiments. PMID:25438318
Optimal implicit 2-D finite differences to model wave propagation in poroelastic media
NASA Astrophysics Data System (ADS)
Itzá, Reymundo; Iturrarán-Viveros, Ursula; Parra, Jorge O.
2016-08-01
Numerical modeling of seismic waves in heterogeneous porous reservoir rocks is an important tool for the interpretation of seismic surveys in reservoir engineering. We apply globally optimal implicit staggered-grid finite differences (FD) to model 2-D wave propagation in heterogeneous poroelastic media at a low-frequency range (<10 kHz). We validate the numerical solution by comparing it to an analytical-transient solution obtaining clear seismic wavefields including fast P and slow P and S waves (for a porous media saturated with fluid). The numerical dispersion and stability conditions are derived using von Neumann analysis, showing that over a wide range of porous materials the Courant condition governs the stability and this optimal implicit scheme improves the stability of explicit schemes. High-order explicit FD can be replaced by some lower order optimal implicit FD so computational cost will not be as expensive while maintaining the accuracy. Here, we compute weights for the optimal implicit FD scheme to attain an accuracy of γ = 10-8. The implicit spatial differentiation involves solving tridiagonal linear systems of equations through Thomas' algorithm.
Optimal implicit 2-D finite differences to model wave propagation in poroelastic media
NASA Astrophysics Data System (ADS)
Itzá, Reymundo; Iturrarán-Viveros, Ursula; Parra, Jorge O.
2016-05-01
Numerical modeling of seismic waves in heterogeneous porous reservoir rocks is an important tool for the interpretation of seismic surveys in reservoir engineering. We apply globally optimal implicit staggered-grid finite-differences to model 2-D wave propagation in heterogeneous poroelastic media at a low-frequency range (<10kHz). We validate the numerical solution by comparing it to an analytical-transient solution obtaining clear seismic wavefields including fast P, slow P and S waves (for a porous media saturated with fluid). The numerical dispersion and stability conditions are derived using von Neumann analysis, showing that over a wide range of porous materials the Courant condition governs the stability and this optimal implicit scheme improves the stability of explicit schemes. High order explicit finite-differences (FD) can be replaced by some lower order optimal implicit FD so computational cost will not be as expensive while maintaining the accuracy. Here we compute weights for the optimal implicit FD scheme to attain an accuracy of γ = 10-8. The implicit spatial differentiation involves solving tridiagonal linear systems of equations through Thomas' algorithm.
Hydraulic Modeling of Alluvial Fans along the Truckee Canal using the 2-Dimensional Model SRH2D
NASA Astrophysics Data System (ADS)
Wright, J.; Kallio, R.; Sankovich, V.
2013-12-01
Alluvial fans are gently sloping, fan-shaped landforms created by sediment deposition at the ends of mountain valleys. Their gentle slopes and scenic vistas are attractive to developers. Unfortunately, alluvial fans are highly flood-prone, and the flow paths of flood events are highly variable, thereby placing human developments at risk. Many studies have been performed on alluvial fans in the arid west because of the uncertainty of their flow paths and flood extents. Most of these studies have been focused on flood elevations and mitigation. This study is not focused on the flood elevations. Rather, it is focused on the attenuation effects of alluvial fans on floods entering and potentially failing a Reclamation canal. The Truckee Canal diverts water from the Truckee River to Lahontan Reservoir. The drainage areas along the canal are alluvial fans with complex distributary channel networks . Ideally, in nature, the sediment grain-size distribution along the alluvial fan flow paths would provide enough infiltration and subsurface storage to attenuate floods entering the canal and reduce risk to low levels. Human development, however, can prevent the natural losses from occurring due to concentrated flows within the alluvial fan. While the concentrated flows might mitigate flood risk inside the fan, they do not lower the flood risk of the canal. A 2-dimensional hydraulic model, SRH-2D, was coupled to a 1-dimensional rainfall-runoff model to estimate the flood attenuation effects of the alluvial fan network surrounding an 11 mile stretch of the Truckee Canal near Fernley, Nevada. Floods having annual exceedance probabilities ranging from 1/10 to 1/100 were computed and analyzed. SRH-2D uses a zonal approach for modeling river systems, allowing areas to be divided into separate zones based on physical parameters such as surface roughness and infiltration. One of the major features of SRH-2D is the adoption of an unstructured hybrid mixed element mesh, which is based
Combining multitracing and 2D-modelling to identify the dynamic of heavy metals during flooding.
NASA Astrophysics Data System (ADS)
Hissler, C.; Hostache, R.; Matgen, P.; Tosheva, Z.; David, E.; Bates, P.; Stille, P.
2012-04-01
to assess the risk of floodplain contamination in heavy metal due to river sediment deposition and to heavy metal partitioning between particulate and dissolved phases. We focus on a multidisciplinary approach combining environmental geochemistry (multitracing) and hydraulic modelling (using TELEMAC-2D). One important single flood event was selected to illustrate this innovative approach. During the entire flood, the river water was sampled every hour in order to collect the particulate and the dissolved fractions. All the tracers were analyzed in both fractions. An important set of hydrological and sedimentological data are used to reach a more efficient calibration of the TELEMAC modelling system. In addition to standard techniques of hydrochemistry, new approaches of in situ suspended sediment transport monitoring will help getting new insights on the hydraulic system behaviour.
Electrical resistivity tomography applied to a complex lava dome: 2D and 3D models comparison
NASA Astrophysics Data System (ADS)
Portal, Angélie; Fargier, Yannick; Lénat, Jean-François; Labazuy, Philippe
2015-04-01
The study of volcanic domes growth (e.g. St. Helens, Unzen, Montserrat) shows that it is often characterized by a succession of extrusion phases, dome explosions and collapse events. Lava dome eruptive activity may last from days to decades. Therefore, their internal structure, at the end of the eruption, is complex and includes massive extrusions and lava lobes, talus and pyroclastic deposits as well as hydrothermal alteration. The electrical resistivity tomography (ERT) method, initially developed for environmental and engineering exploration, is now commonly used for volcano structure imaging. Because a large range of resistivity values is often observed in volcanic environments, the method is well suited to study the internal structure of volcanic edifices. We performed an ERT survey on an 11ka years old trachytic lava dome, the Puy de Dôme volcano (French Massif Central). The analysis of a recent high resolution DEM (LiDAR 0.5 m), as well as other geophysical data, strongly suggest that the Puy de Dôme is a composite dome. 11 ERT profiles have been carried out, both at the scale of the entire dome (base diameter of ~2 km and height of 400 m) on the one hand, and at a smaller scale on the summit part on the other hand. Each profile is composed of 64 electrodes. Three different electrode spacing have been used depending on the study area (35 m for the entire dome, 10 m and 5 m for its summit part). Some profiles were performed with half-length roll-along acquisitions, in order to keep a good trade-off between depth of investigation and resolution. Both Wenner-alpha and Wenner-Schlumberger protocols were used. 2-D models of the electrical resistivity distribution were computed using RES2DINV software. In order to constrain inversion models interpretation, the depth of investigation (DOI) method was applied to those results. It aims to compute a sensitivity index on inversion results, illustrating how the data influence the model and constraining models
Water cycling beneath subduction zones in 2D and 3D numerical models (Invited)
NASA Astrophysics Data System (ADS)
Rupke, L.; Iyer, K. H.; Hasenclever, J.; Morgan, J.
2013-12-01
Tracing the cycling of fluids and volatiles through subduction zones continues to be a challenging task with budgets still having large error bars attached to them. In this contribution we show how numerical models can help to integrate various geological, geophysical, and geochemical datasets and how they can be used to put better bounds on the likely amounts of water being subducted, released into the arc and back-arc melting regions, and recycled to the deeper mantle. To achieve this task we use a suite of numerical models. Bending related faulting and hydration of the incoming lithosphere is resolved using a reactive flow model that solves for crustal scale fluid flow and mantle serpentinization using reaction kinetics. Seismic tomography studies from offshore Chile and Central America are used to evaluate and constrain the effective reaction rate. These rates are then used to assess the contribution of serpentinization to the water budget at subduction zones. The pattern of hydration is controlled by the reaction kinetics and serpentinization is most intense around the 270°C isotherm. The depth of this isotherm correlates well with the dominant spacing of double seismic zones observed globally. Comparison of the results with heat flow data suggests that observed seafloor temperature gradients in the bend-fault region are too low to be caused by ';one-pass' downward water flow into the serpentinizing lithosphere, but rather suggest that bend-faults are areas of active hydrothermal circulation. This implies that serpentine-sourced vents and chemosynthetic vent communities should be found in this deep-sea environment as well. Dehydration reactions are resolved with a 2D kinematic subduction zone model that computes the temperature field and the likely locations and volumes of slab fluid release due to metamorphic dehydration reactions. Here we find that up to 1/3 of the subducted water may be transported into the deeper mantle for the coldest subduction zones
Modeling of two-storey precast school building using Ruaumoko 2D program
Hamid, N. H.; Tarmizi, L. H.; Ghani, K. D.
2015-05-15
The long-distant earthquake loading from Sumatra and Java Island had caused some slight damages to precast and reinforced concrete buildings in West Malaysia such as cracks on wall panels, columns and beams. Subsequently, the safety of existing precast concrete building is needed to be analyzed because these buildings were designed using BS 8110 which did not include the seismic loading in the design. Thus, this paper emphasizes on the seismic performance and dynamic behavior of precast school building constructed in Malaysia under three selected past earthquakes excitations ; El Centro 1940 North-South, El Centro East-West components and San Fernando 1971 using RUAUMOKO 2D program. This program is fully utilized by using prototype precast school model and dynamic non-linear time history analysis. From the results, it can be concluded that two-storey precast school building has experienced severe damage and partial collapse especially at beam-column joint under San Fernando and El Centro North-South Earthquake as its exceeds the allowable inter-storey drift and displacement as specified in Eurocode 8. The San Fernando earthquake has produced a massive destruction to the precast building under viscous damping, ξ = 5% and this building has generated maximum building displacement of 435mm, maximum building drift of 0.68% and maximum bending moment at 8458kNm.
NASA Astrophysics Data System (ADS)
Straatsma, Menno; Huthoff, Fredrik
2011-01-01
In The Netherlands, 2D-hydrodynamic simulations are used to evaluate the effect of potential safety measures against river floods. In the investigated scenarios, the floodplains are completely inundated, thus requiring realistic representations of hydraulic roughness of floodplain vegetation. The current study aims at providing better insight into the uncertainty of flood water levels due to uncertain floodplain roughness parameterization. The study focuses on three key elements in the uncertainty of floodplain roughness: (1) classification error of the landcover map, (2), within class variation of vegetation structural characteristics, and (3) mapping scale. To assess the effect of the first error source, new realizations of ecotope maps were made based on the current floodplain ecotope map and an error matrix of the classification. For the second error source, field measurements of vegetation structure were used to obtain uncertainty ranges for each vegetation structural type. The scale error was investigated by reassigning roughness codes on a smaller spatial scale. It is shown that classification accuracy of 69% leads to an uncertainty range of predicted water levels in the order of decimeters. The other error sources are less relevant. The quantification of the uncertainty in water levels can help to make better decisions on suitable flood protection measures. Moreover, the relation between uncertain floodplain roughness and the error bands in water levels may serve as a guideline for the desired accuracy of floodplain characteristics in hydrodynamic models.
Modeling of two-storey precast school building using Ruaumoko 2D program
NASA Astrophysics Data System (ADS)
Hamid, N. H.; Tarmizi, L. H.; Ghani, K. D.
2015-05-01
The long-distant earthquake loading from Sumatra and Java Island had caused some slight damages to precast and reinforced concrete buildings in West Malaysia such as cracks on wall panels, columns and beams. Subsequently, the safety of existing precast concrete building is needed to be analyzed because these buildings were designed using BS 8110 which did not include the seismic loading in the design. Thus, this paper emphasizes on the seismic performance and dynamic behavior of precast school building constructed in Malaysia under three selected past earthquakes excitations ; El Centro 1940 North-South, El Centro East-West components and San Fernando 1971 using RUAUMOKO 2D program. This program is fully utilized by using prototype precast school model and dynamic non-linear time history analysis. From the results, it can be concluded that two-storey precast school building has experienced severe damage and partial collapse especially at beam-column joint under San Fernando and El Centro North-South Earthquake as its exceeds the allowable inter-storey drift and displacement as specified in Eurocode 8. The San Fernando earthquake has produced a massive destruction to the precast building under viscous damping, ξ = 5% and this building has generated maximum building displacement of 435mm, maximum building drift of 0.68% and maximum bending moment at 8458kNm.
Modelling 2001 lahars at Popocatépetl volcano using FLO2D numerical code
NASA Astrophysics Data System (ADS)
Caballero, L.; Capra, L.
2013-12-01
Popocatépetl volcano is located on the central part of the Transmexican Volcanic Belt. It is one of the most active volcanoes in Mexico and endanger more than 25 million people that lives in its surroundings. In the last months, the renewal of its volcanic activity put into alert scientific community. One of the possible scenarios is the 2001 explosive activity, which was characterized by a 8 km eruptive column and the subsequent formation of pumice flows up to 4 km from the crater. Lahars were generated few hours after, remobilizing the new deposits towards NE flank of the volcano, along Huiloac Gorge, almost reaching Santiago Xalitzintla town (Capra et al., 2004). The occurrence of a similar scenario makes very important to reproduce this event to delimitate accurately lahar hazard zones. In this work, 2001 lahar deposit is modeled using FLO2D numerical code. Geophone data is used to reconstruct initial hydrograph and sediment concentration. Sensitivity study of most important parameters used by this code like Manning, and α and β coefficients was conducted in order to achieve a good simulation. Results obtained were compared with field data and demonstrated a good agreement in thickness and flow distribution. A comparison with previously published data with laharZ program (Muñoz-Salinas, 2009) is also made. Additionally, lahars with fluctuating sediment concentrations but with similar volume are simulated to observe the influence of the rheological behavior on lahar distribution.
Spot size variation FCS in simulations of the 2D Ising model
NASA Astrophysics Data System (ADS)
Burns, Margaret C.; Nouri, Mariam; Veatch, Sarah L.
2016-06-01
Spot variation fluorescence correlation spectroscopy (svFCS) was developed to study the movement and organization of single molecules in plasma membranes. This experimental technique varies the size of an illumination area while measuring correlations in time using standard fluorescence correlation methods. Frequently, this data is interpreted using the assumption that correlation measurements reflect the dynamics of single molecule motions, and not motions of the average composition. Here, we explore how svFCS measurements report on the dynamics of components diffusing within simulations of a 2D Ising model with a conserved order parameter. Simulated correlation functions report on both the fast dynamics of single component mobility and the slower dynamics of the average composition. Over a range of simulation conditions, a conventional svFCS analysis suggests the presence of anomalous diffusion even though single molecule motions are nearly Brownian in these simulations. This misinterpretation is most significant when the surface density of the fluorescent label is elevated, therefore we suggest future measurements be made over a range of tracer densities. Some simulation conditions reproduce qualitative features of published svFCS experimental data. Overall, this work emphasizes the need to probe membranes using multiple complimentary experimental methodologies in order to draw conclusions regarding the nature of spatial and dynamical heterogeneity in these systems.
GPU computing with OpenCL to model 2D elastic wave propagation: exploring memory usage
NASA Astrophysics Data System (ADS)
Iturrarán-Viveros, Ursula; Molero-Armenta, Miguel
2015-01-01
Graphics processing units (GPUs) have become increasingly powerful in recent years. Programs exploring the advantages of this architecture could achieve large performance gains and this is the aim of new initiatives in high performance computing. The objective of this work is to develop an efficient tool to model 2D elastic wave propagation on parallel computing devices. To this end, we implement the elastodynamic finite integration technique, using the industry open standard open computing language (OpenCL) for cross-platform, parallel programming of modern processors, and an open-source toolkit called [Py]OpenCL. The code written with [Py]OpenCL can run on a wide variety of platforms; it can be used on AMD or NVIDIA GPUs as well as classical multicore CPUs, adapting to the underlying architecture. Our main contribution is its implementation with local and global memory and the performance analysis using five different computing devices (including Kepler, one of the fastest and most efficient high performance computing technologies) with various operating systems.
2D and 3D multipactor modeling in dielectric-loaded accelerator structures
NASA Astrophysics Data System (ADS)
Sinitsyn, Oleksandr; Nusinovich, Gregory; Antonsen, Thomas
2010-11-01
Multipactor (MP) is known as the avalanche growth of the number of secondary electrons emitted from a solid surface exposed to an RF electric field under vacuum conditions. MP is a severe problem in modern rf systems and, therefore, theoretical and experimental studies of MP are of great interest to the researchers working in various areas of physics and engineering. In this work we present results of MP studies in dielectric-loaded accelerator (DLA) structures. First, we show simulation results obtained with the use of the 2D self-consistent MP model (O. V. Sinitsyn, et. al., Phys. Plasmas, vol. 16, 073102 (2009)) and compare those to experimental ones obtained during recent extensive studies of DLA structures performed by Argonne National Laboratory, Naval Research Laboratory, SLAC National Accelerator Laboratory and Euclid TechLabs (C. Jing, et al., IEEE Trans. Plasma Sci., vol. 38, pp. 1354-1360 (2010)). Then we present some new results of 3D analysis of MP which include studies of particle trajectories and studies of MP development at the early stage.
Spectral functions in the 1D and 2D Bose Hubbard model
NASA Astrophysics Data System (ADS)
Ivancic, Robert; Duchon, Eric; Trivedi, Nandini
2014-03-01
We use state of the art numerical techniques including quantum Monte Carlo and maximum entropy methods to obtain the low energy excitation spectra in the superfluid and Mott-insulator phases of the Bose Hubbard model. These results are checked in 1D against Bethe Ansatz and tDMRG results and extended to 2D where such approaches are impossible. In the superfluid, we find linearly dispersing Bogoliubov sound modes as well as additional gapped modes broadened by interaction effects. In the Mott insulator, we find evidence for a finite gap and well defined quasiparticle excitations. We examine properties such as the excitation lifetime, density of states, and speed of sound as the system is tuned across the quantum phase transition that separates the superfluid and Mott states. These results provide an important theoretical framework for upcoming ultracold atom experiments in one and two dimensions. We acknowledge support from the NSF DMR-0907275 (R.I., E.D. and N.T.).
D Recording for 2d Delivering - the Employment of 3d Models for Studies and Analyses -
NASA Astrophysics Data System (ADS)
Rizzi, A.; Baratti, G.; Jiménez, B.; Girardi, S.; Remondino, F.
2011-09-01
In the last years, thanks to the advances of surveying sensors and techniques, many heritage sites could be accurately replicated in digital form with very detailed and impressive results. The actual limits are mainly related to hardware capabilities, computation time and low performance of personal computer. Often, the produced models are not visible on a normal computer and the only solution to easily visualized them is offline using rendered videos. This kind of 3D representations is useful for digital conservation, divulgation purposes or virtual tourism where people can visit places otherwise closed for preservation or security reasons. But many more potentialities and possible applications are available using a 3D model. The problem is the ability to handle 3D data as without adequate knowledge this information is reduced to standard 2D data. This article presents some surveying and 3D modeling experiences within the APSAT project ("Ambiente e Paesaggi dei Siti d'Altura Trentini", i.e. Environment and Landscapes of Upland Sites in Trentino). APSAT is a multidisciplinary project funded by the Autonomous Province of Trento (Italy) with the aim documenting, surveying, studying, analysing and preserving mountainous and hill-top heritage sites located in the region. The project focuses on theoretical, methodological and technological aspects of the archaeological investigation of mountain landscape, considered as the product of sequences of settlements, parcelling-outs, communication networks, resources, and symbolic places. The mountain environment preserves better than others the traces of hunting and gathering, breeding, agricultural, metallurgical, symbolic activities characterised by different lengths and environmental impacts, from Prehistory to the Modern Period. Therefore the correct surveying and documentation of this heritage sites and material is very important. Within the project, the 3DOM unit of FBK is delivering all the surveying and 3D material to
Approaches to Modeling Coupled Flow and Reaction in a 2-D Cementation Experiment
Steefel, Carl; Cochepin, B.; Trotignon, L.; Bildstein, O.; Steefel, C.; Lagneau, V.; van der Lee, J.
2008-04-01
Porosity evolution at reactive interfaces is a key process that governs the evolution and performances of many engineered systems that have important applications in earth and environmental sciences. This is the case, for example, at the interface between cement structures and clays in deep geological nuclear waste disposals. Although in a different transport regime, similar questions arise for permeable reactive barriers used for biogeochemical remediation in surface environments. The COMEDIE project aims at investigating the coupling between transport, hydrodynamics and chemistry when significant variations of porosity occur. The present work focuses on a numerical benchmark used as a design exercise for the future COMEDIE-2D experiment. The use of reactive transport simulation tools like Hytec and Crunch provides predictions of the physico-chemical evolutions that are expected during the future experiments in laboratory. Focus is given in this paper on the evolution during the simulated experiment of precipitate, permeability and porosity fields. A first case is considered in which the porosity is constant. Results obtained with Crunch and Hytec are in relatively good agreement. Differences are attributable to the models of reactive surface area taken into account for dissolution/precipitation processes. Crunch and Hytec simulations taking into account porosity variations are then presented and compared. Results given by the two codes are in qualitative agreement, with differences attributable in part to the models of reactive surface area for dissolution/precipitation processes. As a consequence, the localization of secondary precipitates predicted by Crunch leads to lower local porosities than for predictions obtained by Hytec and thus to a stronger coupling between flow and chemistry. This benchmark highlights the importance of the surface area model employed to describe systems in which strong porosity variations occur as a result of dissolution
1D and 2D urban dam-break flood modelling in Istanbul, Turkey
NASA Astrophysics Data System (ADS)
Ozdemir, Hasan; Neal, Jeffrey; Bates, Paul; Döker, Fatih
2014-05-01
Urban flood events are increasing in frequency and severity as a consequence of several factors such as reduced infiltration capacities due to continued watershed development, increased construction in flood prone areas due to population growth, the possible amplification of rainfall intensity due to climate change, sea level rise which threatens coastal development, and poorly engineered flood control infrastructure (Gallegos et al., 2009). These factors will contribute to increased urban flood risk in the future, and as a result improved modelling of urban flooding according to different causative factor has been identified as a research priority (Gallegos et al., 2009; Ozdemir et al. 2013). The flooding disaster caused by dam failures is always a threat against lives and properties especially in urban environments. Therefore, the prediction of dynamics of dam-break flows plays a vital role in the forecast and evaluation of flooding disasters, and is of long-standing interest for researchers. Flooding occurred on the Ayamama River (Istanbul-Turkey) due to high intensity rainfall and dam-breaching of Ata Pond in 9th September 2009. The settlements, industrial areas and transportation system on the floodplain of the Ayamama River were inundated. Therefore, 32 people were dead and millions of Euros economic loses were occurred. The aim of this study is 1 and 2-Dimensional flood modelling of the Ata Pond breaching using HEC-RAS and LISFLOOD-Roe models and comparison of the model results using the real flood extent. The HEC-RAS model solves the full 1-D Saint Venant equations for unsteady open channel flow whereas LISFLOOD-Roe is the 2-D shallow water model which calculates the flow according to the complete Saint Venant formulation (Villanueva and Wright, 2006; Neal et al., 2011). The model consists a shock capturing Godunov-type scheme based on the Roe Riemann solver (Roe, 1981). 3 m high resolution Digital Surface Model (DSM), natural characteristics of the pond
NASA Astrophysics Data System (ADS)
Jung, J.; Arakawa, A.
2015-12-01
Through explicitly resolved cloud-scale processes by embedded 2-D cloud-resolving models (CRMs), the Multiscale Modeling Framework (MMF) known as the superparameterization has been reasonably successful to simulate various atmospheric events over a wide range of time scales. One thing to be justified is, however, if the influence of complex 3-D topography can be adequately represented by the embedded 2-D CRMs. In this study, simulations are performed in the presence of a variety of topography with embedded 3-D and 2-D CRMs in a single-column inactive GCM. Through the comparison between these simulations, it is demonstrated that the 2-D representation of topography is able to simulate the statistics of precipitation due to 3-D topography reasonably well as long as the topographic characteristics, such as the mean and standard deviation, are closely recognized. It is also shown that the use of two perpendicular sets of 2-D representations tends to reduce the error due to a 2-D representation.
Pool Formation in Boulder-Bed Streams: Implications From 1-D and 2-D Numerical Modeling
NASA Astrophysics Data System (ADS)
Harrison, L. R.; Keller, E. A.
2003-12-01
In mountain rivers of Southern California, boulder-large roughness elements strongly influence flow hydraulics and pool formation and maintenance. In these systems, boulders appear to control the stream morphology by converging flow and producing deep pools during channel forming discharges. Our research goal is to develop quantitative relationships between boulder roughness elements, temporal patterns of scour and fill, and geomorphic processes that are important in producing pool habitat. The longitudinal distribution of shear stress, unit stream power and velocity were estimated along a 48 m reach on Rattlesnake Creek, using the HEC-RAS v 3.0 and River 2-D numerical models. The reach has an average slope of 0.02 and consists of a pool-riffle sequence with a large boulder constriction directly above the pool. Model runs were performed for a range of stream discharges to test if scour and fill thresholds for pool and riffle environments could be identified. Results from the HEC-RAS simulations identified that thresholds in shear stress, unit stream power and mean velocity occur above a discharge of 5.0 cms. Results from the one-dimensional analysis suggest that the reversal in competency is likely due to changes in cross-sectional width at varying flows. River 2-D predictions indicated that strong transverse velocity gradients were present through the pool at higher modeled discharges. At a flow of 0.5 cms (roughly 1/10th bankfull discharge), velocities are estimated at 0.6 m/s and 1.3 m/s for the pool and riffle, respectively. During discharges of 5.15 cms (approximate bankfull discharge), the maximum velocity in the pool center increased to nearly 3.0 m/s, while the maximum velocity over the riffle is estimated at approximately 2.5 cms. These results are consistent with those predicted by HEC-RAS, though the reversal appears to be limited to a narrow jet that occurs through the pool head and pool center. Model predictions suggest that the velocity reversal is
On craton thinning/destruction: Insight from 2D thermal-mechanical numerical modeling
NASA Astrophysics Data System (ADS)
Liao, J.
2014-12-01
Although most cratons maintain stable, some exceptions are present, such as the North China craton, North Atlantic craton, and Wyoming craton, which have experienced dramatic lithospheric deformation/thinning. Mechanisms triggering cratonic thinning remains enigmatic [Lee et al., 2011]. Using a 2D thermo-mechanical coupled numerical model [Gerya and Yuen, 2007], we investigate two possible mechanisms: (1) stratification of cratonic lithospheric mantle, and (2) rheological weakening due to hydration.Lithospheric mantle stratification is a common feature in cratonic areas which has been demonstrated by geophysical and geochemical studies [Thybo and Perchuc, 1997; Griffin et al., 2004; Romanowicz, 2009; Rychert and Shearer, 2009; Yuan and Romanowicz, 2010]. The influence of lithospheric mantle stratification during craton evolution remains poorly understood. A rheologically weak layer representing hydrated and/or metasomatized composition is implemented in the lithospheric mantle. Our results show that the weak mantle layer changes the dynamics of lithospheric extension by enhancing the deformation of the overlying mantle and crust and inhibiting deformation of the underlying mantle [Liao et al., 2013; Liao and Gerya, 2014]. Modeling results are compared with North China and North Atlantic cratons. Our work indicates that although the presence of a weak layer may not be sufficient to initiate craton deformation, it enhances deformation by lowering the required extensional plate boundary force. Rheological weakening due to hydration is a possible mechanism triggering/enhancing craton deformation, especially for cratons jaxtaposing with a subduction, since water can release from a subducting slab. We investigate the influence of wet mantle flow laws [Hirth and Kohlstedt, 2003], in which a water parameter (i.e. constant water content) is involved. Our results show that wet dislocation alone does not accelerate cratonic deformation significantly. However, if wet diffusion
Facial Sketch Synthesis Using 2D Direct Combined Model-Based Face-Specific Markov Network.
Tu, Ching-Ting; Chan, Yu-Hsien; Chen, Yi-Chung
2016-08-01
A facial sketch synthesis system is proposed, featuring a 2D direct combined model (2DDCM)-based face-specific Markov network. In contrast to the existing facial sketch synthesis systems, the proposed scheme aims to synthesize sketches, which reproduce the unique drawing style of a particular artist, where this drawing style is learned from a data set consisting of a large number of image/sketch pairwise training samples. The synthesis system comprises three modules, namely, a global module, a local module, and an enhancement module. The global module applies a 2DDCM approach to synthesize the global facial geometry and texture of the input image. The detailed texture is then added to the synthesized sketch in a local patch-based manner using a parametric 2DDCM model and a non-parametric Markov random field (MRF) network. Notably, the MRF approach gives the synthesized results an appearance more consistent with the drawing style of the training samples, while the 2DDCM approach enables the synthesis of outcomes with a more derivative style. As a result, the similarity between the synthesized sketches and the input images is greatly improved. Finally, a post-processing operation is performed to enhance the shadowed regions of the synthesized image by adding strong lines or curves to emphasize the lighting conditions. The experimental results confirm that the synthesized facial images are in good qualitative and quantitative agreement with the input images as well as the ground-truth sketches provided by the same artist. The representing power of the proposed framework is demonstrated by synthesizing facial sketches from input images with a wide variety of facial poses, lighting conditions, and races even when such images are not included in the training data set. Moreover, the practical applicability of the proposed framework is demonstrated by means of automatic facial recognition tests. PMID:27244737
NASA Astrophysics Data System (ADS)
Shen, D.; Wang, J.; Cheng, X.; Rui, Y.; Ye, S.
2015-08-01
The rapid progress of lidar technology has made the acquirement and application of high-resolution digital elevation model (DEM) data increasingly popular, especially in regards to the study of floodplain flow. However, high-resolution DEM data pose several disadvantages for floodplain modeling studies; e.g., the data sets contain many redundant interpolation points, large numbers of calculations are required to work with data, and the data do not match the size of the computational mesh. Two-dimensional (2-D) hydraulic modeling, which is a popular method for analyzing floodplain flow, offers highly precise elevation parameterization for computational mesh while ignoring much of the micro-topographic information of the DEM data itself. We offer a flood simulation method that integrates 2-D hydraulic model results and high-resolution DEM data, thus enabling the calculation of flood water levels in DEM grid cells through local inverse distance-weighted interpolation. To get rid of the false inundation areas during interpolation, it employs the run-length encoding method to mark the inundated DEM grid cells and determine the real inundation areas through the run-length boundary tracing technique, which solves the complicated problem of connectivity between DEM grid cells. We constructed a 2-D hydraulic model for the Gongshuangcha detention basin, which is a flood storage area of Dongting Lake in China, by using our integrated method to simulate the floodplain flow. The results demonstrate that this method can solve DEM associated problems efficiently and simulate flooding processes with greater accuracy than simulations only with DEM.
Building a 2.5D Digital Elevation Model from 2D Imagery
NASA Technical Reports Server (NTRS)
Padgett, Curtis W.; Ansar, Adnan I.; Brennan, Shane; Cheng, Yang; Clouse, Daniel S.; Almeida, Eduardo
2013-01-01
When projecting imagery into a georeferenced coordinate frame, one needs to have some model of the geographical region that is being projected to. This model can sometimes be a simple geometrical curve, such as an ellipse or even a plane. However, to obtain accurate projections, one needs to have a more sophisticated model that encodes the undulations in the terrain including things like mountains, valleys, and even manmade structures. The product that is often used for this purpose is a Digital Elevation Model (DEM). The technology presented here generates a high-quality DEM from a collection of 2D images taken from multiple viewpoints, plus pose data for each of the images and a camera model for the sensor. The technology assumes that the images are all of the same region of the environment. The pose data for each image is used as an initial estimate of the geometric relationship between the images, but the pose data is often noisy and not of sufficient quality to build a high-quality DEM. Therefore, the source imagery is passed through a feature-tracking algorithm and multi-plane-homography algorithm, which refine the geometric transforms between images. The images and their refined poses are then passed to a stereo algorithm, which generates dense 3D data for each image in the sequence. The 3D data from each image is then placed into a consistent coordinate frame and passed to a routine that divides the coordinate frame into a number of cells. The 3D points that fall into each cell are collected, and basic statistics are applied to determine the elevation of that cell. The result of this step is a DEM that is in an arbitrary coordinate frame. This DEM is then filtered and smoothed in order to remove small artifacts. The final step in the algorithm is to take the initial DEM and rotate and translate it to be in the world coordinate frame [such as UTM (Universal Transverse Mercator), MGRS (Military Grid Reference System), or geodetic] such that it can be saved in
Dynamic Linkages Between the Transition Zone & Surface Plate Motions in 2D Models of Subduction
NASA Astrophysics Data System (ADS)
Arredondo, K.; Billen, M. I.
2012-12-01
Descending subducted slabs affect both plate tectonics at the surface and overall mantle flow (e.g. Conrad and Lithgow-Bertelloni, 2002). For time-dependent numerical models, the potential evolution of these slabs, ranging from immediate penetration into the lower mantle to prior buckling and stagnation, are affected by parameters such as the plate age, the viscosity jump into the lower mantle, the presence of phase transitions, trench motion and the chosen governing equation approximation (e.g. Billen and Hirth, 2007). Similarly, the overall deviatoric stress within the slab, especially where modified by the phase transitions, may explain the uneven distribution of deep earthquakes with depth (e.g. Bina, 1997). Better understanding of these processes may arise from a more realistic 2-D model that is fully-dynamic, with an overriding plate, freely-moving trench, compositionally-layered slab and seven major phase transitions, in addition to using the compressible (TALA) form of the governing equations. Though the thermodynamic parameters of certain phase transitions may be uncertain, this study aims to test the latest data and encourage further mineralogical research. We will present fully-dynamic models, which explore the importance of the phase transitions, especially those that have been previously excluded such as the wadsleyite to ringwoodite and the pyroxene and garnet phase transitions. These phase transitions, coupled with the modeled compositionally distinct crust, harzburgite, and pyrolite lithosphere layers, may produce new large-scale dynamic behavior not seen in past numerical models, as well as stress variations within the slab related to deep slab seismicity. Feedback from the compositionally complex slab to the dynamic trench may provide further insight on the mechanics of slab stagnation and behavior in the upper and lower mantle. Billen, M. I., and G. Hirth, Rheologic controls on slab dynamics, Geochemistry, Geophysics and Geosystems, 8 (Q08012
Development of a Geocryologic Model of Permafrost From 2D Inversion of IP Profiling
NASA Astrophysics Data System (ADS)
Fortier, R.; Leblanc, A.
2004-05-01
Non-invasive investigation of permafrost along a planned route of pipeline, road or airstrip in cold regions involves the use of effective methods for detecting, characterizing, mapping and monitoring permafrost conditions on various spatial and temporal scales. Among the available near-surface geophysical methods, the electrical resistivity imaging is probably the most suitable method since the resistivity contrast between unfrozen and frozen ground can be one or two orders of magnitude. Induced polarization (IP) profiling was carried out to study the spatial distribution of ground ice in two permafrost mounds near Umiujaq in Nunavik, Canada. A dipole-dipole array was used to perform the IP profiling. Pseudo-sections of electrical resistivity and chargeability giving a misrepresented cross-section of the sub-surface were first draw. The inversion of IP profiling was also performed using DCIP2D developed by UBC-GIF for estimating the spatial distribution of electrical properties in the ground to create realistic models of sub-surface resistivity and chargeability cross-section. The inverse models show clearly the presence of ice-rich core in the permafrost mounds. The ice-rich cores are underlined by high resistivity values while the unfrozen zones show low resistivity values. The localisation of the permafrost table is highlighted by a strong contrast of resistivity while the permafrost base is marked by a transitional change in resistivity. In the hollow between the permafrost mounds, the models show low resistivity values characteristic of unfrozen zone. A synthetic resistivity sounding built from the most acceptable inverse model correlates well with electrical resistivity logging carried out in the permafrost mound during cone penetration tests. The inversion of IP profiling is fundamental for defining realistic models of sub-surface resistivity and chargeability. Electrical resistivity imaging is a appropriate near-surface geophysical method for permafrost
NASA Astrophysics Data System (ADS)
Croissant, Thomas; Lague, Dimitri; Davy, Philippe; Steer, Philippe
2016-04-01
In active mountain ranges, large earthquakes (Mw > 5-6) trigger numerous landslides that impact river dynamics. These landslides bring local and sudden sediment piles that will be eroded and transported along the river network causing downstream changes in river geometry, transport capacity and erosion efficiency. The progressive removal of landslide materials has implications for downstream hazards management and also for understanding landscape dynamics at the timescale of the seismic cycle. The export time of landslide-derived sediments after large-magnitude earthquakes has been studied from suspended load measurements but a full understanding of the total process, including the coupling between sediment transfer and channel geometry change, still remains an issue. Note that the transport of small sediment pulses has been studied in the context of river restoration, but the magnitude of sediment pulses generated by landslides may make the problem different. Here, we study the export of large volumes (>106 m3) of sediments with the 2D hydro-morphodynamic model, Eros. This model uses a new hydrodynamic module that resolves a reduced form of the Saint-Venant equations with a particle method. It is coupled with a sediment transport and lateral and vertical erosion model. Eros accounts for the complex retroactions between sediment transport and fluvial geometry, with a stochastic description of the floods experienced by the river. Moreover, it is able to reproduce several features deemed necessary to study the evacuation of large sediment pulses, such as river regime modification (single-thread to multi-thread), river avulsion and aggradation, floods and bank erosion. Using a synthetic and simple topography we first present how granulometry, landslide volume and geometry, channel slope and flood frequency influence 1) the dominance of pulse advection vs. diffusion during its evacuation, 2) the pulse export time and 3) the remaining volume of sediment in the catchment
Analytical formulation of 2-D aeroelastic model in weak ground effect
NASA Astrophysics Data System (ADS)
Dessi, Daniele; Mastroddi, Franco; Mancini, Simone
2013-10-01
This paper deals with the aeroelastic modeling and analysis of a 2-D oscillating airfoil in ground effect, elastically constrained by linear and torsional springs and immersed in an incompressible potential flow (typical section) at a finite distance from the ground. This work aims to extend Theodorsen theory, valid in an unbounded flow domain, to the case of weak ground effect, i.e., for clearances above half the airfoil chord. The key point is the determination of the aerodynamic loads, first in the frequency domain and then in the time domain, accounting for their dependence on the ground distance. The method of images is exploited in order to comply with the impermeability condition on the ground. The new integral equation in the unknown vortex distribution along the chord and the wake is solved using asymptotic expansions in the perturbation parameter defined as the inverse of the non-dimensional ground clearance of the airfoil. The mathematical model describing the aeroelastic system is transformed from the frequency domain into the time domain and then in a pure differential form using a finite-state aerodynamic approximation (augmented states). The typical section, which the developed theory is applied to, is obtained as a reduced model of a wing box finite element representation, thus allowing comparison with the corresponding aeroelastic analysis carried out by a commercial solver based on a 3-D lifting surface aerodynamic model. Stability (flutter margins) and response of the airfoil both in frequency and time domains are then investigated. In particular, within the developed theory, the solution of the Wagner problem can be directly achieved confirming an asymptotic trend of the aerodynamic coefficients toward the steady-state conditions different from that relative to the unbounded domain case. The dependence of flutter speed and the frequency response functions on ground clearance is highlighted, showing the usefulness of this approach in efficiently
Potts glass reflection of the decoding threshold for qudit quantum error correcting codes
NASA Astrophysics Data System (ADS)
Jiang, Yi; Kovalev, Alexey A.; Pryadko, Leonid P.
We map the maximum likelihood decoding threshold for qudit quantum error correcting codes to the multicritical point in generalized Potts gauge glass models, extending the map constructed previously for qubit codes. An n-qudit quantum LDPC code, where a qudit can be involved in up to m stabilizer generators, corresponds to a ℤd Potts model with n interaction terms which can couple up to m spins each. We analyze general properties of the phase diagram of the constructed model, give several bounds on the location of the transitions, bounds on the energy density of extended defects (non-local analogs of domain walls), and discuss the correlation functions which can be used to distinguish different phases in the original and the dual models. This research was supported in part by the Grants: NSF PHY-1415600 (AAK), NSF PHY-1416578 (LPP), and ARO W911NF-14-1-0272 (LPP).
NASA Astrophysics Data System (ADS)
Abdelmalak, M.; Mourgues, R.; Bureau, D.
2012-04-01
The analysis of surface deformation in response to approaching intrusion is important for assessing volcanic hazards. In this paper, we present results from 2D scaled models of magma intrusion, in which we discuss the propagation mode and related surface deformation during dyke growth. Our experiments consist in the injection of analogue magma (Golden syrup) into cohesive fine-grained silica powder, simulating the brittle upper crust. Using an optical image correlation technique (Particle Imaging Velocimetry), we were able to follow the surface deformation, the displacements within the country rock and to calculate strains induced by the magma emplacement. We identified two kinds of intrusion morphologies resulting from different interactions between the dyke and plastic deformations occurring in the country rock near the surface. In both morphologies, the dyke is vertical at depth. Our analysis demonstrates that both hydraulic tensile opening and shear-related propagation operate during this first stage of vertical growth. At the same time, the surface lifted up and formed a smooth symmetrical dome. Both types of morphologies differ in the upper part. During a second stage of evolution, the first type of intrusion inclined at a dip between 45 to 65°. This inclination is not caused by shear deformations and is attributed to stress rotation near the tip. Closer to the surface, the growth of the inclined sheet creates shear bands which conduct the fluid toward the surface. The surface uplift becomes asymmetric. The second type of intrusion does not rotate at depth and continues its vertical propagation by catching vertical tensile cracks. The intrusion of magma in these cracks creates horizontal stresses which are responsible for the closure of fractures and the formation of reverse faults. At the surface the dome remains symmetrical. For both intrusions, the surface uplift accelerates during the second stage and it is strongly influenced by the presence or the
The Two-Commponent Model and 2d Metal-Insulator Transition
NASA Astrophysics Data System (ADS)
Castner, Theodore G.
2004-03-01
Fermi liquid theory for the 2d MIT is extended to include the soft correlation gap (CG) in the density-of-states N(E) from carrier interactions [N(E)α(E-E_F)^t] producing a minimum in N(E) at E_F. The results are consistent with the scaling form g=g_cexp(xT_o/T) in a limited T-regime, but not as Tarrow0 ruling out the perfect conductor scenario. The two-component model of itinerant plus localized electrons n_i+n_loc=n=n_c(1+x) for n>nc is an essential feature and allows a full explanation of the T-dependence of the metallic resistivity ratio ρ_i(T)/ρ_i(0) [ρ_i= 1/(σ-σ_c)] including the maximum at T_max. The results explain the Hanein et al. data^1 for p-type GaAs and show p_i(T)/p_i(0)=1+T/T_phi in a restricted T-range where T_phi=xTc [T_c=E_c/k, E_c=mobility edge] as x=p/p_c-1 goes to 0. The correction to EF from the soft CG [of width |Delta_c] yields a constant ratio E_F/Δc as x goes to 0. The origin of the nonuniversal gc [ρc at x=0] and implications for the beta function β(g)=ln(g/g_c) and single particle scaling will be discussed. 1. Y. Hanein et al., PRL80, 1288 (1998);Phys.Rev.B58, R13338 (1998).
2D condensation model for the inner Solar Nebula: an enstatite-rich environment
NASA Astrophysics Data System (ADS)
Pignatale, F. C.; Liffman, Kurt; Maddison, Sarah T.; Brooks, Geoffrey
2016-04-01
Infrared observations provide the dust composition in the protoplanetary discs surface layers, but cannot probe the dust chemistry in the mid-plane, where planet formation occurs. Meteorites show that dynamics was important in determining the dust distribution in the Solar Nebula and needs to be considered if we are to understand the global chemistry in discs. 1D radial condensation sequences can only simulate one disc layer at a time and cannot describe the global chemistry or the complexity of meteorites. To address these limitations, we compute for the first time the 2D distribution of condensates in the inner Solar Nebula using a thermodynamic equilibrium model, and derive time-scales for vertical settling and radial migration of dust. We find two enstatite-rich zones within 1 AU from the young Sun: a band ˜0.1 AU thick in the upper optically-thin layer of the disc interior to 0.8 AU, and in the optically-thick disc mid-plane out to ˜0.4 AU. The two enstatite-rich zones support recent evidence that Mercury and enstatite chondrites (ECs) shared a bulk material with similar composition. Our results are also consistent with infrared observation of protoplanetary disc which show emission of enstatite-rich dust in the inner surface of discs. The resulting chemistry and dynamics suggests that the formation of the bulk material of ECs occurred in the inner surface layer of the disc, within 0.4 AU. We also propose a simple alternative scenario in which gas fractionation and vertical settling of the condensates lead to an enstatite-chondritic bulk material.
Combined global 2D-local 3D modeling of the industrial Czochralski silicon crystal growth process
NASA Astrophysics Data System (ADS)
Jung, T.; Seebeck, J.; Friedrich, J.
2013-04-01
A global, axisymmetric thermal model of a Czochralski furnace is coupled to an external, local, 3D, time-dependent flow model of the melt via the inclusion of turbulent heat fluxes, extracted from the 3D melt model, into the 2D furnace model. Boundary conditions of the 3D model are updated using results from the 2D model. In the 3D model the boundary layers are resolved by aggressive mesh refinement towards the walls, and the Large Eddy Simulation approach is used to model the turbulent flow in the melt volume on a relatively coarse mesh to minimize calculation times. It is shown that by using this approach it is possible to reproduce fairly good results from Direct Numerical Simulations obtained on much finer meshes, as well as experimental results for interface shape and oxygen concentration in the case of growth of silicon crystals with 210 mm diameter for photovoltaics by the Czochralski method.
Chen, Meimei; Yang, Xuemei; Lai, Xinmei; Gao, Yuxing
2015-10-15
Cholesteryl ester transfer protein (CETP) inhibitors hold promise as new agents against coronary heart disease. Molecular modeling techniques such as 2D-QSAR and 3D-QSAR analysis were applied to establish models to distinguish potent and weak CETP inhibitors. 2D and 3D QSAR models-based a series of diphenylpyridylethanamine (DPPE) derivatives (newly identified as CETP inhibitors) were then performed to elucidate structural and physicochemical requirements for higher CETP inhibitory activity. The linear and spline 2D-QSAR models were developed through multiple linear regression (MLR) and support vector machine (SVM) methods. The best 2D-QSAR model obtained by SVM gave a high predictive ability (R(2)train=0.929, R(2)test=0.826, Q(2)LOO=0.780). Also, the 2D-QSAR models uncovered that SlogP_VSA0, E_sol and Vsurf_DW23 were important features in defining activity. In addition, the best 3D-QSAR model presented higher predictive ability (R(2)train=0.958, R(2)test=0.852, Q(2)LOO=0.734) based on comparative molecular field analysis (CoMFA). Meanwhile, the derived contour maps from 3D-QSAR model revealed the significant structural features (steric and electronic effects) required for improving CETP inhibitory activity. Consequently, twelve newly designed DPPE derivatives were proposed to be robust and potent CETP inhibitors. Overall, these derived models may help to design novel DPPE derivatives with better CETP inhibitory activity. PMID:26346366
A MODIFIED LIGHT TRANSMISSION VISUALIZATION METHOD FOR DNAPL SATURATION MEASUREMENTS IN 2-D MODELS
In this research, a light transmission visualization (LTV) method was used to quantify dense non-aqueous phase liquids (DNAPL) saturation in two-dimensional (2-D), two fluid phase systems. The method is an expansion of earlier LTV methods and takes into account both absorption an...
• LTV can be used to characterize free phase PCE architecture in 2-D flow chambers without using a dye. • Results to date suggest that error in PCE detection using LTV can be less than 10% if the imaging system is optimized. • Mass balance calculations show a maximum error of 9...
Comparison of the 1D flux theory with a 2D hydrodynamic secondary settling tank model.
Ekama, G A; Marais, P
2004-01-01
The applicability of the 1D idealized flux theory (1DFT) for design of secondary settling tanks (SSTs) is evaluated by comparing its predicted maximum surface overflow (SOR) and solids loading (SLR) rates with that calculated from the 2D hydrodynamic model SettlerCAD using as a basis 35 full scale SST stress tests conducted on different SSTs with diameters from 30 to 45m and 2.25 to 4.1 m side water depth, with and without Stamford baffles. From the simulations, a relatively consistent pattern appeared, i.e. that the 1DFT can be used for design but its predicted maximum SLR needs to be reduced by an appropriate flux rating, the magnitude of which depends mainly on SST depth and hydraulic loading rate (HLR). Simulations of the sloping bottom shallow (1.5-2.5 m SWD) Dutch SSTs tested by STOWa and the Watts et al. SST, all with doubled SWDs, and the Darvill new (4.1 m) and old (2.5 m) SSTs with interchanged depths, were run to confirm the sensitivity of the flux rating to depth and HLR. Simulations with and without a Stamford baffle were also done. While the design of the internal features of the SST, such as baffling, have a marked influence on the effluent SS concentration for underloaded SSTs, these features appeared to have only a small influence on the flux rating, i.e. capacity, of the SST, In the meantime until more information is obtained, it would appear that from the simulations so far that the flux rating of 0.80 of the 1DFT maximum SLR recommended by Ekama and Marais remains a reasonable value to apply in the design of full scale SSTs--for deep SSTs (4 m SWD) the flux rating could be increased to 0.85 and for shallow SSTs (2.5 m SWD) decreased to 0.75. It is recommended that (i) while the apparent interrelationship between SST flux rating and depth suggests some optimization of the volume of the SST, that this be avoided and that (ii) the depth of the SST be designed independently of the surface area as is usually the practice and once selected, the
Development of models for the two-dimensional, two-fluid code for sodium boiling NATOF-2D. [LMFBR
Zielinski, R.G.; Kazimi, M.S.
1981-09-01
Several features were incorporated into NATOF-2D, a two-dimensional, two fluid code developed at MIT for the purpose of analysis of sodium boiling transients under LMFBR conditions. They include improved interfacial mass, momentum and energy exchange rate models, and a cell-to-cell radial heat conduction mechanism which was calibrated by simulation of Westinghouse Blanket Heat Transfer Test Program Runs 544 and 545. Finally, a direct method of pressure field solution was implemented into a direct method of pressure field solution was implemented into NATOF-2D, replacing the iterative technique previously available, and resulted in substantially reduced computational costs.
NASA Technical Reports Server (NTRS)
Dyominov, I. G.
1989-01-01
On the basis of the 2-D radiative-photochemical model of the ozone layer at heights 0 to 60 km in the Northern Hemisphere there are revealed and analyzed in detail the characteristic features of the season-altitude-latitude variations of ozone and temperature due to changes of the solar flux during the 11 year cycle, electron and proton precipitations.
NASA Astrophysics Data System (ADS)
Bandrowski, D.; Lai, Y.; Bradley, N.; Gaeuman, D. A.; Murauskas, J.; Som, N. A.; Martin, A.; Goodman, D.; Alvarez, J.
2014-12-01
In the field of river restoration sciences there is a growing need for analytical modeling tools and quantitative processes to help identify and prioritize project sites. 2D hydraulic models have become more common in recent years and with the availability of robust data sets and computing technology, it is now possible to evaluate large river systems at the reach scale. The Trinity River Restoration Program is now analyzing a 40 mile segment of the Trinity River to determine priority and implementation sequencing for its Phase II rehabilitation projects. A comprehensive approach and quantitative tool has recently been developed to analyze this complex river system referred to as: 2D-Hydrodynamic Based Logic Modeling (2D-HBLM). This tool utilizes various hydraulic output parameters combined with biological, ecological, and physical metrics at user-defined spatial scales. These metrics and their associated algorithms are the underpinnings of the 2D-HBLM habitat module used to evaluate geomorphic characteristics, riverine processes, and habitat complexity. The habitat metrics are further integrated into a comprehensive Logic Model framework to perform statistical analyses to assess project prioritization. The Logic Model will analyze various potential project sites by evaluating connectivity using principal component methods. The 2D-HBLM tool will help inform management and decision makers by using a quantitative process to optimize desired response variables with balancing important limiting factors in determining the highest priority locations within the river corridor to implement restoration projects. Effective river restoration prioritization starts with well-crafted goals that identify the biological objectives, address underlying causes of habitat change, and recognizes that social, economic, and land use limiting factors may constrain restoration options (Bechie et. al. 2008). Applying natural resources management actions, like restoration prioritization, is
Driven microswimmers on a 2D substrate: A stochastic towed sled model
NASA Astrophysics Data System (ADS)
Marchegiani, Giampiero; Marchesoni, Fabio
2015-11-01
We investigate, both numerically and analytically, the diffusion properties of a stochastic sled sliding on a substrate, subject to a constant towing force. The problem is motivated by the growing interest in controlling transport of artificial microswimmers in 2D geometries at low Reynolds numbers. We simulated both symmetric and asymmetric towed sleds. Remarkable properties of their mobilities and diffusion constants include sidewise drifts and excess diffusion peaks. We interpret our numerical findings by making use of stochastic approximation techniques.
Driven microswimmers on a 2D substrate: A stochastic towed sled model
Marchegiani, Giampiero; Marchesoni, Fabio
2015-11-14
We investigate, both numerically and analytically, the diffusion properties of a stochastic sled sliding on a substrate, subject to a constant towing force. The problem is motivated by the growing interest in controlling transport of artificial microswimmers in 2D geometries at low Reynolds numbers. We simulated both symmetric and asymmetric towed sleds. Remarkable properties of their mobilities and diffusion constants include sidewise drifts and excess diffusion peaks. We interpret our numerical findings by making use of stochastic approximation techniques.
Numerical Simulations of High-Frequency Respiratory Flows in 2D and 3D Lung Bifurcation Models
NASA Astrophysics Data System (ADS)
Chen, Zixi; Parameswaran, Shamini; Hu, Yingying; He, Zhaoming; Raj, Rishi; Parameswaran, Siva
2014-07-01
To better understand the human pulmonary system and optimize the high-frequency oscillatory ventilation (HFOV) design, numerical simulations were conducted under normal breathing frequency and HFOV condition using a CFD code Ansys Fluent and its user-defined C programs. 2D and 3D double bifurcating lung models were created, and the geometry corresponds to fifth to seventh generations of airways with the dimensions based on the Weibel's pulmonary model. Computations were carried out for different Reynolds numbers (Re = 400 and 1000) and Womersley numbers (α = 4 and 16) to study the air flow fields, gas transportation, and wall shear stresses in the lung airways. Flow structure was compared with experimental results. Both 2D and 3D numerical models successfully reproduced many results observed in the experiment. The oxygen concentration distribution in the lung model was investigated to analyze the influence of flow oscillation on gas transport inside the lung model.
Modeling the Transverse Thermal Conductivity of 2-D SiCf/SiC Composites Made with Woven Fabric
Youngblood, Gerald E.; Senor, David J.; Jones, Russell H.
2004-06-30
The hierarchical two-layer (H2L) model was developed to describe the effective transverse thermal conductivity, Keff, of a 2D-SiCf/SiC composite made from stacked and infiltrated woven fabric layers in terms of constituent properties and microstructural and architectural variables. The H2L model includes the expected effects of fiber-matrix interfacial conductance as well as the effects of high fiber packing fractions within individual tows and the non-uniform nature of 2D-fabric layers that usually include a significant amount of interlayer porosity. Previously, H2L model predictions were compared to measured values of Keff for two versions of DuPont 2D-Hi NicalonÃ”/PyC/ICVI-SiC composite, one with a â€œthinâ€ (0.110 Î¼m) and the other with a â€œthickâ€ (1.040 Î¼m) pyrocarbon (PyC) fiber coating, and for a 2D-TyrannoÃ” SA/â€thinâ€ PyC/FCVI-SIC composite made by ORNL. In this study, H2L model predictions are compared to measured Keff-values for a 2D-SiCf/SiC composite made by GE Power Systems (formerly DuPont Lanxide) using the ICVI-process with Hi-NicalonÃ” type S fabric. The values of Keff determined for the composite made with the Hi-NicalonÃ” type S fabric were significantly greater than Keff-values determined for the composites made with either the Hi-NicalonÃ”or the TyrannoÃ” SA fabrics. Differences in Keff-values were expected for using different fiber types, but major differences also were due to observed microstructural variations between the systems, and as predicted by the H2L model.
NASA Astrophysics Data System (ADS)
Fang, F.; Zhang, T.; Pavlidis, D.; Pain, C. C.; Buchan, A. G.; Navon, I. M.
2014-10-01
A novel reduced order model (ROM) based on proper orthogonal decomposition (POD) has been developed for a finite-element (FE) adaptive mesh air pollution model. A quadratic expansion of the non-linear terms is employed to ensure the method remained efficient. This is the first time such an approach has been applied to air pollution LES turbulent simulation through three dimensional landscapes. The novelty of this work also includes POD's application within a FE-LES turbulence model that uses adaptive resolution. The accuracy of the reduced order model is assessed and validated for a range of 2D and 3D urban street canyon flow problems. By comparing the POD solutions against the fine detail solutions obtained from the full FE model it is shown that the accuracy is maintained, where fine details of the air flows are captured, whilst the computational requirements are reduced. In the examples presented below the size of the reduced order models is reduced by factors up to 2400 in comparison to the full FE model while the CPU time is reduced by up to 98% of that required by the full model.
Local Autoencoding for Parameter Estimation in a Hidden Potts-Markov Random Field.
Song, Sanming; Si, Bailu; Herrmann, J Michael; Feng, Xisheng
2016-05-01
A local-autoencoding (LAE) method is proposed for the parameter estimation in a Hidden Potts-Markov random field model. Due to sampling cost, Markov chain Monte Carlo methods are rarely used in real-time applications. Like other heuristic methods, LAE is based on a conditional independence assumption. It adapts, however, the parameters in a block-by-block style with a simple Hebbian learning rule. Experiments with given label fields show that the LAE is able to converge in far less time than required for a scan. It is also possible to derive an estimate for LAE based on a Cramer–Rao bound that is similar to the classical maximum pseudolikelihood method. As a general algorithm, LAE can be used to estimate the parameters in anisotropic label fields. Furthermore, LAE is not limited to the classical Potts model and can be applied to other types of Potts models by simple label field transformations and straightforward learning rule extensions. Experimental results on image segmentations demonstrate the efficiency and generality of the LAE algorithm. PMID:27019491
NASA Astrophysics Data System (ADS)
Yogurtcu, Osman N.; Johnson, Margaret E.
2015-08-01
The dynamics of association between diffusing and reacting molecular species are routinely quantified using simple rate-equation kinetics that assume both well-mixed concentrations of species and a single rate constant for parameterizing the binding rate. In two-dimensions (2D), however, even when systems are well-mixed, the assumption of a single characteristic rate constant for describing association is not generally accurate, due to the properties of diffusional searching in dimensions d ≤ 2. Establishing rigorous bounds for discriminating between 2D reactive systems that will be accurately described by rate equations with a single rate constant, and those that will not, is critical for both modeling and experimentally parameterizing binding reactions restricted to surfaces such as cellular membranes. We show here that in regimes of intrinsic reaction rate (ka) and diffusion (D) parameters ka/D > 0.05, a single rate constant cannot be fit to the dynamics of concentrations of associating species independently of the initial conditions. Instead, a more sophisticated multi-parametric description than rate-equations is necessary to robustly characterize bimolecular reactions from experiment. Our quantitative bounds derive from our new analysis of 2D rate-behavior predicted from Smoluchowski theory. Using a recently developed single particle reaction-diffusion algorithm we extend here to 2D, we are able to test and validate the predictions of Smoluchowski theory and several other theories of reversible reaction dynamics in 2D for the first time. Finally, our results also mean that simulations of reactive systems in 2D using rate equations must be undertaken with caution when reactions have ka/D > 0.05, regardless of the simulation volume. We introduce here a simple formula for an adaptive concentration dependent rate constant for these chemical kinetics simulations which improves on existing formulas to better capture non-equilibrium reaction dynamics from dilute
NASA Technical Reports Server (NTRS)
Shie, Chung-Lin; Tao, Wei-Kuo; Simpson, Joanne
2003-01-01
The 1999 Kwajalein Atoll field experiment (KWAJEX), one of several major TRMM (Tropical Rainfall Measuring Mission) field experiments, has successfully obtained a wealth of information and observation data on tropical convective systems over the western Central Pacific region. In this paper, clouds and convective systems that developed during three active periods (Aug 7-12, Aug 17-21, and Aug 29-Sep 13) around Kwajalein Atoll site are simulated using both 2D and 3D Goddard Cumulus Ensemble (GCE) models. Based on numerical results, the clouds and cloud systems are generally unorganized and short lived. These features are validated by radar observations that support the model results. Both the 2D and 3D simulated rainfall amounts and their stratiform contribution as well as the heat, water vapor, and moist static energy budgets are examined for the three convective episodes. Rainfall amounts are quantitatively similar between the two simulations, but the stratiform contribution is considerably larger in the 2D simulation. Regardless of dimension, fo all three cases, the large-scale forcing and net condensation are the two major physical processes that account for the evolution of the budgets with surface latent heat flux and net radiation solar and long-wave radiation)being secondary processes. Quantitative budget differences between 2D and 3D as well as between various episodes will be detailed.Morover, simulated radar signatures and Q1/Q2 fields from the three simulations are compared to each other and with radar and sounding observations.
NASA Astrophysics Data System (ADS)
Ciminelli, C.; Armenise, M. N.
2007-07-01
In this paper report on the design of a 2D PBG filter in polymeric material. The filter is a Fabry-Perot cavity having a self-sustained membrane configuration. A deep parametric analysis has been carried out for improving the performance, taking also into account the fabrication tolerances Best performance in terms of lateral confinement have been obtained in case of square lattice. As for materials, polystyrene shown best in terms of refractive index value, length of the photonic crystal structure and attenuation value in the band gap. The filter can be used either in sensing applications or in telecommunication field.
NASA Astrophysics Data System (ADS)
Ivy, D. J.; Rigby, M. L.; Prinn, R. G.; Muhle, J.; Weiss, R. F.
2009-12-01
We present optimized annual global emissions from 1973-2008 of nitrogen trifluoride (NF3), a powerful greenhouse gas which is not currently regulated by the Kyoto Protocol. In the past few decades, NF3 production has dramatically increased due to its usage in the semiconductor industry. Emissions were estimated through the 'pulse-method' discrete Kalman filter using both a simple, flexible 2-D 12-box model used in the Advanced Global Atmospheric Gases Experiment (AGAGE) network and the Model for Ozone and Related Tracers (MOZART v4.5), a full 3-D atmospheric chemistry model. No official audited reports of industrial NF3 emissions are available, and with limited information on production, a priori emissions were estimated using both a bottom-up and top-down approach with two different spatial patterns based on semiconductor perfluorocarbon (PFC) emissions from the Emission Database for Global Atmospheric Research (EDGAR v3.2) and Semiconductor Industry Association sales information. Both spatial patterns used in the models gave consistent results, showing the robustness of the estimated global emissions. Differences between estimates using the 2-D and 3-D models can be attributed to transport rates and resolution differences. Additionally, new NF3 industry production and market information is presented. Emission estimates from both the 2-D and 3-D models suggest that either the assumed industry release rate of NF3 or industry production information is still underestimated.
Stock, Kristin; Estrada, Marta F; Vidic, Suzana; Gjerde, Kjersti; Rudisch, Albin; Santo, Vítor E; Barbier, Michaël; Blom, Sami; Arundkar, Sharath C; Selvam, Irwin; Osswald, Annika; Stein, Yan; Gruenewald, Sylvia; Brito, Catarina; van Weerden, Wytske; Rotter, Varda; Boghaert, Erwin; Oren, Moshe; Sommergruber, Wolfgang; Chong, Yolanda; de Hoogt, Ronald; Graeser, Ralph
2016-01-01
Two-dimensional (2D) cell cultures growing on plastic do not recapitulate the three dimensional (3D) architecture and complexity of human tumors. More representative models are required for drug discovery and validation. Here, 2D culture and 3D mono- and stromal co-culture models of increasing complexity have been established and cross-comparisons made using three standard cell carcinoma lines: MCF7, LNCaP, NCI-H1437. Fluorescence-based growth curves, 3D image analysis, immunohistochemistry and treatment responses showed that end points differed according to cell type, stromal co-culture and culture format. The adaptable methodologies described here should guide the choice of appropriate simple and complex in vitro models. PMID:27364600
Stock, Kristin; Estrada, Marta F.; Vidic, Suzana; Gjerde, Kjersti; Rudisch, Albin; Santo, Vítor E.; Barbier, Michaël; Blom, Sami; Arundkar, Sharath C.; Selvam, Irwin; Osswald, Annika; Stein, Yan; Gruenewald, Sylvia; Brito, Catarina; van Weerden, Wytske; Rotter, Varda; Boghaert, Erwin; Oren, Moshe; Sommergruber, Wolfgang; Chong, Yolanda; de Hoogt, Ronald; Graeser, Ralph
2016-01-01
Two-dimensional (2D) cell cultures growing on plastic do not recapitulate the three dimensional (3D) architecture and complexity of human tumors. More representative models are required for drug discovery and validation. Here, 2D culture and 3D mono- and stromal co-culture models of increasing complexity have been established and cross-comparisons made using three standard cell carcinoma lines: MCF7, LNCaP, NCI-H1437. Fluorescence-based growth curves, 3D image analysis, immunohistochemistry and treatment responses showed that end points differed according to cell type, stromal co-culture and culture format. The adaptable methodologies described here should guide the choice of appropriate simple and complex in vitro models. PMID:27364600
Müller, Peter; Messmer, Marie; Bayer, Monika; Pfeilschifter, Josef M; Hintermann, Edith; Christen, Urs
2016-05-01
Non-alcoholic fatty liver disease (NAFLD) and its more severe development non-alcoholic steatohepatitis (NASH) are increasing worldwide. In particular NASH, which is characterized by an active hepatic inflammation, has often severe consequences including progressive fibrosis, cirrhosis, and eventually hepatocellular carcinoma (HCC). Here we investigated how metabolic liver injury is influencing the pathogenesis of autoimmune hepatitis (AIH). We used the CYP2D6 mouse model in which wild type C57BL/6 mice are infected with an Adenovirus expressing the major liver autoantigen cytochrome P450 2D6 (CYP2D6). Such mice display several features of human AIH, including interface hepatitis, formation of LKM-1 antibodies and CYP2D6-specific T cells, as well as hepatic fibrosis. NAFLD was induced with a high-fat diet (HFD). We found that pre-existing NAFLD potentiates the severity of AIH. Mice fed for 12 weeks with a HFD displayed increased cellular infiltration of the liver, enhanced hepatic fibrosis and elevated numbers of liver autoantigen-specific T cells. Our data suggest that a pre-existing metabolic liver injury constitutes an additional risk for the severity of an autoimmune condition of the liver, such as AIH. PMID:26924542
SU-E-T-05: A 2D EPID Transit Dosimetry Model Based On An Empirical Quadratic Formalism
Tan, Y; Metwaly, M; Glegg, M; Baggarley, S; Elliott, A
2014-06-01
Purpose: To describe a 2D electronic portal imaging device (EPID) transit dosimetry model, based on an empirical quadratic formalism, that can predict either EPID or in-phantom dose distribution for comparisons with EPID captured image or treatment planning system (TPS) dose respectively. Methods: A quadratic equation can be used to relate the reduction in intensity of an exit beam to the equivalent path length of the attenuator. The calibration involved deriving coefficients from a set of dose planes measured for homogeneous phantoms with known thicknesses under reference conditions. In this study, calibration dose planes were measured with EPID and ionisation chamber (IC) in water for the same reference beam (6MV, 100mu, 20×20cm{sup 2}) and set of thicknesses (0–30cm). Since the same calibration conditions were used, the EPID and IC measurements can be related through the quadratic equation. Consequently, EPID transit dose can be predicted from TPS exported dose planes and in-phantom dose can be predicted using EPID distribution captured during treatment as an input. The model was tested with 4 open fields, 6 wedge fields, and 7 IMRT fields on homogeneous and heterogeneous phantoms. Comparisons were done using 2D absolute gamma (3%/3mm) and results were validated against measurements with a commercial 2D array device. Results: The gamma pass rates for comparisons between EPID measured and predicted ranged from 93.6% to 100.0% for all fields and phantoms tested. Results from this study agreed with 2D array measurements to within 3.1%. Meanwhile, comparisons in-phantom between TPS computed and predicted ranged from 91.6% to 100.0%. Validation with 2D array device was not possible for inphantom comparisons. Conclusion: A 2D EPID transit dosimetry model for treatment verification was described and proven to be accurate. The model has the advantage of being generic and allows comparisons at the EPID plane as well as multiple planes in-phantom.
A new micromechanical approach of micropolar continuum modeling for 2-D periodic cellular material
NASA Astrophysics Data System (ADS)
Niu, Bin; Yan, Jun
2016-06-01
In this paper, we present a new united approach to formulate the equivalent micropolar constitutive relation of two-dimensional (2-D) periodic cellular material to capture its non-local properties and to explain the size effects in its structural analysis. The new united approach takes both the displacement compatibility and the equilibrium of forces and moments into consideration, where Taylor series expansion of the displacement and rotation fields and the extended averaging procedure with an explicit enforcement of equilibrium are adopted in the micromechanical analysis of a unit cell. In numerical examples, the effective micropolar constants obtained in this paper and others derived in the literature are used for the equivalent micropolar continuum simulation of cellular solids. The solutions from the equivalent analysis are compared with the discrete simulation solutions of the cellular solids. It is found that the micropolar constants developed in this paper give satisfying results of equivalent analysis for the periodic cellular material.
2-D Modeling of the Variability of the Solar Interior for Climate Studies
NASA Astrophysics Data System (ADS)
Sofia, S.; Li, L. H.; Spada, F.; Ventura, P.
2012-07-01
To establish the possible influence of solar variability on climate, it is necessary to understand the luminosity changes induced by a variable dynamo magnetic field. To accomplish this, we have developed a 2D code of the structure and evolution of the solar interior (based on the 1D YREC code), that includes rotation, magnetic fields of arbitrary configuration, and turbulence, that can be run on very short time scales (down to 1 year), and that represents all global parameters (R, L, Teff) with a relative accuracy of 1 part per million, or better. This paper discusses the motivation for this work, the structure and the physical components of the code, and its application to interpret the results of the SODISM experiment on the PICARD satellite, and of the balloon-borne Solar Disk Sextant (SDS) experiment.
A 2-D Self-Consistent DSMC Model for Chemically Reacting Low Pressure Plasma Reactors
Bartel, Timothy J.; Economou, Demetre; Johannes, Justine E.
1999-06-17
This paper will focus on the methodology of using a 2D plasma Direct Simulation Monte Carlo technique to simulate the species transport in an inductively coupled, low pressure, chemically reacting plasma system. The pressure in these systems is typically less than 20 mtorr with plasma densities of approximately 10{sup 17} {number_sign}/m{sup 3} and an ionization level of only 0.1%. This low ionization level tightly couples the neutral, ion, and electron chemistries and interactions in a system where the flow is subsonic. We present our strategy and compare simulation results to experimental data for Cl{sub 2} in a Gaseous Electronics Conference (GEC) reference cell modified with an inductive coil.
2D full wave modeling for a synthetic Doppler backscattering diagnostic
Hillesheim, J. C.; Schmitz, L.; Kubota, S.; Rhodes, T. L.; Carter, T. A.; Holland, C.
2012-10-15
Doppler backscattering (DBS) is a plasma diagnostic used in tokamaks and other magnetic confinement devices to measure the fluctuation level of intermediate wavenumber (k{sub {theta}}{rho}{sub s}{approx} 1) density fluctuations and the lab frame propagation velocity of turbulence. Here, a synthetic DBS diagnostic is described, which has been used for comparisons between measurements in the DIII-D tokamak and predictions from nonlinear gyrokinetic simulations. To estimate the wavenumber range to which a Gaussian beam would be sensitive, a ray tracing code and a 2D finite difference, time domain full wave code are used. Experimental density profiles and magnetic geometry are used along with the experimental antenna and beam characteristics. An example of the effect of the synthetic diagnostic on the output of a nonlinear gyrokinetic simulation is presented.
A Model of the Effect of Uncertainty on the C elegans L2/L2d Decision
Avery, Leon
2014-01-01
At the end of the first larval stage, the C elegans larva chooses between two developmental pathways, an L2 committed to reproductive development and an L2d, which has the option of undergoing reproductive development or entering the dauer diapause. I develop a quantitative model of this choice using mathematical tools developed for pricing financial options. The model predicts that the optimal decision must take into account not only the expected potential for reproductive growth, but also the uncertainty in that expected potential. Because the L2d has more flexibility than the L2, it is favored in unpredictable environments. I estimate that the ability to take uncertainty into account may increase reproductive value by as much as 5%, and discuss possible experimental tests for this ability. PMID:25029446
NASA Astrophysics Data System (ADS)
Lin, L.; Ding, S. S.; Chen, J.; Liang, X. Y.; Li, X. M.
2012-05-01
A 2D random void model (RVM) is proposed to describe voids morphology in Carbon Fiber Reinforced Plastic (CFRP) composite materials and used to investigate Ultrasonic Scattering Attenuation Coefficient (USAC). Void morphology simulations from RVM present good matches to micrographic observations. The fluctuations of USAC due to the randomness of void morphology and their dependence on the frequency have been discussed, which are significantly helpful to clarify ultrasonic scattering attenuation mechanism from voids in nature.
2D Radiation MHD K-shell Modeling of Single Wire Array Stainless Steel Experiments on the Z Machine
Thornhill, J. W.; Giuliani, J. L.; Apruzese, J. P.; Chong, Y. K.; Davis, J.; Dasgupta, A.; Whitney, K. G.; Clark, R. W.; Jones, B.; Coverdale, C. A.; Ampleford, D. J.; Cuneo, M. E.; Deeney, C.
2009-01-21
Many physical effects can produce unstable plasma behavior that affect K-shell emission from arrays. Such effects include: asymmetry in the initial density profile, asymmetry in power flow, thermal conduction at the boundaries, and non-uniform wire ablation. Here we consider how asymmetry in the radiation field also contributes to the generation of multidimensional plasma behavior that affects K-shell power and yield. To model this radiation asymmetry, we have incorporated into the MACH2 r-z MHD code a self-consistent calculation of the non-LTE population kinetics based on radiation transport using multi-dimensional ray tracing. Such methodology is necessary for modeling the enhanced radiative cooling that occurs at the anode and cathode ends of the pinch during the run-in phase of the implosion. This enhanced radiative cooling is due to reduced optical depth at these locations producing an asymmetric flow of radiative energy that leads to substantial disruption of large initial diameter (>5 cm) pinches and drives 1D into 2D fluid (i.e., Rayleigh-Taylor like) flows. The impact of this 2D behavior on K-shell power and yield is investigated by comparing 1D and 2D model results with data obtained from a series of single wire array stainless steel experiments performed on the Z generator.
Compartment modeling anslysis of C-11 flumazenil kinetics in human brain using dynamic 2D and 3D PET
Choi, Y.; Simpson, N.; Townsend, D.W.
1994-05-01
We examined the feasibility of compartment modeling analysis and the numerical accuracy of model parameters of radioligand delivery and binding in the brain using 2D and 3D PET. Two subjects were injected with C-11 flumazenil (FMZ) i.v., and imaged over the brain with a dynamic sequence of 6x20 s, 2x30 s, 4x90 s, 4x180 s, 2x300 s, 2x600 s, and 2x1200 s frames. Different scatter correction methods were applied to the 3D data: No scatter correction (NOC), dual-energy window subtraction (DEW) and convolution-subtraction (CON). The kinetic data for regions listed below were fitted to a 2-compartment, 2-parameter model. Both 2D and 3D results are similar and within the expected range. The 3D %SE was less than 2D despite the smaller dose. The effect of the scatter in 3D parameter estimates appears to be small. These preliminary data indicate temporally sufficient kinetic data can be acquired in 3D mode to perform compartmental analysis of C-11 FMZ. Improved sensitivity in 3D may allow more accurate receptor characterization especially in small structures or in low specific binding areas.
Toward IMRT 2D dose modeling using artificial neural networks: A feasibility study
Kalantzis, Georgios; Vasquez-Quino, Luis A.; Zalman, Travis; Pratx, Guillem; Lei, Yu
2011-10-15
Purpose: To investigate the feasibility of artificial neural networks (ANN) to reconstruct dose maps for intensity modulated radiation treatment (IMRT) fields compared with those of the treatment planning system (TPS). Methods: An artificial feed forward neural network and the back-propagation learning algorithm have been used to replicate dose calculations of IMRT fields obtained from PINNACLE{sup 3} v9.0. The ANN was trained with fluence and dose maps of IMRT fields for 6 MV x-rays, which were obtained from the amorphous silicon (a-Si) electronic portal imaging device of Novalis TX. Those fluence distributions were imported to the TPS and the dose maps were calculated on the horizontal midpoint plane of a water equivalent homogeneous cylindrical virtual phantom. Each exported 2D dose distribution from the TPS was classified into two clusters of high and low dose regions, respectively, based on the K-means algorithm and the Euclidian metric in the fluence-dose domain. The data of each cluster were divided into two sets for the training and validation phase of the ANN, respectively. After the completion of the ANN training phase, 2D dose maps were reconstructed by the ANN and isodose distributions were created. The dose maps reconstructed by ANN were evaluated and compared with the TPS, where the mean absolute deviation of the dose and the {gamma}-index were used. Results: A good agreement between the doses calculated from the TPS and the trained ANN was achieved. In particular, an average relative dosimetric difference of 4.6% and an average {gamma}-index passing rate of 93% were obtained for low dose regions, and a dosimetric difference of 2.3% and an average {gamma}-index passing rate of 97% for high dose region. Conclusions: An artificial neural network has been developed to convert fluence maps to corresponding dose maps. The feasibility and potential of an artificial neural network to replicate complex convolution kernels in the TPS for IMRT dose calculations
Quantum geometry of 2D gravity coupled to unitary matter
NASA Astrophysics Data System (ADS)
Ambjørn, J.; Anagnostopoulos, K. N.
1997-02-01
We show that there exists a divergent correlation length in 2D quantum gravity for the matter fields close to the critical point provided one uses the invariant geodesic distance as the measure of distance. The corresponding reparameterization invariant two-point functions satisfy all scaling relations known from the ordinary theory of critical phenomena and the KPZ exponents are determined by the power-like fall-off of these two-point functions. The only difference compared to flat space is the appearance of a dynamically generated fractal dimension d h in the scaling relations. We analyze numerically the fractal properties of space-time for the Ising and three-states Potts model coupled to two-dimensional quantum gravity using finite size scaling as well as small distance scaling of invariant correlation functions. Our data are consistent with dh = 4, but we cannot rule out completely the conjecture dH = -2 α1/ α-1, where α- n is the gravitational dressing exponent of a spinless primary field of conformal weight ( n + 1, n + 1). We compute the moments < L> and the loop-length distribution function and show that the fractal properties associated with these observables are identical, with good accuracy, to the pure gravity case.
A novel simple procedure to consider seismic soil structure interaction effects in 2D models
NASA Astrophysics Data System (ADS)
Jaramillo, Juan Diego; Gómez, Juan David; Restrepo, Doriam; Rivera, Santiago
2014-09-01
A method is proposed to estimate the seismic soil-structure-interaction (SSI) effects for use in engineering practice. It is applicable to 2D structures subjected to vertically incident shear waves supported by homogenous half-spaces. The method is attractive since it keeps the simplicity of the spectral approach, overcomes some of the difficulties and inaccuracies of existing classical techniques and yet it considers a physically consistent excitation. This level of simplicity is achieved through a response spectra modification factor that can be applied to the free-field 5%-damped response spectra to yield design spectral ordinates that take into account the scattered motions introduced by the interaction effects. The modification factor is representative of the Transfer Function (TF) between the structural relative displacements and the free-field motion, which is described in terms of its maximum amplitude and associated frequency. Expressions to compute the modification factor by practicing engineers are proposed based upon a parametric study using 576 cases representative of actual structures. The method is tested in 10 cases spanning a wide range of common fundamental vibration periods.
NASA Astrophysics Data System (ADS)
Puyate, Y. T.; Rim-Rukeh, A.
A 2D model that describes diffusion of oxygen with biochemical reaction during biofilm formation process in static aqueous medium is presented. The analysis is based on X60 steel placed at the bottom of a container containing produced water inoculated with Leptothrix discophora (iron-oxidizing bacteria). These bacteria form biofilms on the exposed surfaces of the metal. The biofilm-microorganisms absorb oxygen from the produced water through biochemical reaction, resulting in transfer of oxygen from the bulk liquid phase to the biofilm. Predictions of the model are compared with experimental data and good agreement is obtained.
Kraloua, B.; Hennad, A.
2008-09-23
The aim of this paper is to determine electric and physical properties by 2D modelling of glow discharge low pressure in continuous regime maintained by term constant source. This electric discharge is confined in reactor plan-parallel geometry. This reactor is filled by Argon monatomic gas. Our continuum model the order two is composed the first three moments the Boltzmann's equations coupled with Poisson's equation by self consistent method. These transport equations are discretized by the finite volumes method. The equations system is resolved by a new technique, it is about the N-BEE explicit scheme using the time splitting method.
NASA Astrophysics Data System (ADS)
Klemm, Dietmar; Marrani, Alessio; Petri, Nicolò; Santoli, Camilla
2015-09-01
We consider a deformation of the well-known stu model of N = 2, D = 4 supergravity, characterized by a non-homogeneous special Kähler manifold, and by the smallest electric-magnetic duality Lie algebra consistent with its upliftability to five dimensions. We explicitly solve the BPS attractor equations and construct static supersymmetric black holes with radial symmetry, in the context of U(1) dyonic Fayet-Iliopoulos gauging, focussing on axion-free solutions. Due to non-homogeneity of the scalar manifold, the model evades the analysis recently given in the literature. The relevant physical properties of the resulting black hole solution are discussed.
NASA Astrophysics Data System (ADS)
Autovino, Dario; Negm, Amro; Rallo, Giovanni; Provenzano, Giuseppe
2016-04-01
In Mediterranean countries characterized by limited water resources for agricultural and societal sectors, irrigation management plays a major role to improve water use efficiency at farm scale, mainly where irrigation systems are correctly designed to guarantee a suitable application efficiency and the uniform water distribution throughout the field. In the last two decades, physically-based agro-hydrological models have been developed to simulate mass and energy exchange processes in the soil-plant-atmosphere (SPA) system. Mechanistic models like HYDRUS 2D/3D (Šimunek et al., 2011) have been proposed to simulate all the components of water balance, including actual crop transpiration fluxes estimated according to a soil potential-dependent sink term. Even though the suitability of these models to simulate the temporal dynamics of soil and crop water status has been reported in the literature for different horticultural crops, a few researches have been considering arboreal crops where the higher gradients of root water uptake are the combination between the localized irrigation supply and the three dimensional root system distribution. The main objective of the paper was to assess the performance of HYDRUS-2D model to evaluate soil water contents and transpiration fluxes of an olive orchard irrigated with two different water distribution systems. Experiments were carried out in Castelvetrano (Sicily) during irrigation seasons 2011 and 2012, in a commercial farm specialized in the production of table olives (Olea europaea L., var. Nocellara del Belice), representing the typical variety of the surrounding area. During the first season, irrigation water was provided by a single lateral placed along the plant row with four emitters per plant (ordinary irrigation), whereas during the second season a grid of emitters laid on the soil was installed in order to irrigate the whole soil surface around the selected trees. The model performance was assessed based on the
Local Mass Transfer Coefficient for Idealized 2D Urban Street Canyon Models
NASA Astrophysics Data System (ADS)
Leung, Ka Kit; Liu, Chun-Ho
2011-09-01
Human activities in urban areas is one of the major sources of anthropogenic releases in the atmospheric boundary layer (ABL). The mechanism of urban morphology for the heat and mass transfer in built environment is thus an attractive topic in the research community. In this paper, a series of laboratory measurements is conducted to elucidate the mass transfer from hypothetical urban roughness constructed by idealized 2D street canyons. The experiments are carried out in the wind tunnel in the University of Hong Kong. The urban ABL structure inside the wind tunnel is controlled by placing small cubic Styrofoam blocks upstream of the test section. The street canyons are fabricated by movable rectangular acrylic blocks so that different building height to street width (aspect) ratios are examined. The height of building blocks is kept minimum to make sure that the urban ABL over the street canyons is high enough for fully developed turbulent flows. The prevailing wind is normal to the street axis, demonstrating the scenario of least pollutant removal from the street canyons to the urban ABL. The sample street canyon is covered by soaked filter papers to represent uniform mass concentrations on the building facades and ground surface. The wet bulb temperature of the filter papers is continuously monitored to ensure saturated conditions. Their weight before and after an experiment is used to measure the amount of water evaporated. Preliminary results illustrate the local mass transfer coefficient distribution for aspect ratios 1/4, 1/2, 1, and 2, which are comparable with those available in literuatre.
NASA Astrophysics Data System (ADS)
Luo, Xin; Lu, Xin; Cong, Chunxiao; Yu, Ting; Xiong, Qihua; Ying Quek, Su
2015-10-01
2D layered materials have recently attracted tremendous interest due to their fascinating properties and potential applications. The interlayer interactions are much weaker than the intralayer bonds, allowing the as-synthesized materials to exhibit different stacking sequences, leading to different physical properties. Here, we show that regardless of the space group of the 2D materials, the Raman frequencies of the interlayer shear modes observed under the typical configuration blue shift for AB stacked materials, and red shift for ABC stacked materials, as the number of layers increases. Our predictions are made using an intuitive bond polarizability model which shows that stacking sequence plays a key role in determining which interlayer shear modes lead to the largest change in polarizability (Raman intensity); the modes with the largest Raman intensity determining the frequency trends. We present direct evidence for these conclusions by studying the Raman modes in few layer graphene, MoS2, MoSe2, WSe2 and Bi2Se3, using both first principles calculations and Raman spectroscopy. This study sheds light on the influence of stacking sequence on the Raman intensities of intrinsic interlayer modes in 2D layered materials in general, and leads to a practical way of identifying the stacking sequence in these materials.
2005-07-01
Aniso2d is a two-dimensional seismic forward modeling code. The earth is parameterized by an X-Z plane in which the seismic properties Can have monoclinic with x-z plane symmetry. The program uses a user define time-domain wavelet to produce synthetic seismograms anrwhere within the two-dimensional media.
NASA Technical Reports Server (NTRS)
Matthaeus, W. H.; Pontius, D. H., Jr.; Gray, P. C.; Bieber, J. W.
1995-01-01
A two-component model for the spectrum of interplanetary magnetic fluctuations was proposed on the basis of ISEE observations, and has found an intriguing level of application in other solar wind studies. The model fluctuations consist of a fraction of 'slab' fluctuations, varying only in the direction parallel to the locally uniform mean magnetic field B(0) and a complement of 2D (two-dimensional) fluctuations that vary in the directions transverse to B(0). We have developed an spectral method computational algorithm for computing the magnetic flux surfaces (flux tubes) associated with the composite model, based upon a precise analogy with equations for ideal transport of a passive scalar in planar two dimensional geometry. Visualization of various composite models will be presented, including the 80 percent 2D/ 20 percent slab model with delta B/B(0) approximately equals 1 and a minus 5/3 spectral law, that is thought to approximately represent a snapshot of solar wind turbulence. Characteristically, the visualizations show that flux tubes, even when defined as regular on some plane, shred and disperse rapidly as they are viewed along the parallel direction. This diffusive process, which generalizes the standard picture of field line random walk, will be discussed in detail. Evidently, the traditional picture that flux tubes randomize like strands of spaghetti with a uniform tangle along the axial direction is in need of modification.
NASA Technical Reports Server (NTRS)
Fleming, Eric L.; Jackman, Charles H.; Considine, David B.; Stolarski, Richard S.
1999-01-01
In this study, we examine the sensitivity of long lived tracers to changes in the base transport components in our 2-D model. Changes to the strength of the residual circulation in the upper troposphere and stratosphere and changes to the lower stratospheric K(sub zz) had similar effects in that increasing the transport rates decreased the overall stratospheric mean age, and increased the rate of removal of material from the stratosphere. Increasing the stratospheric K(sub yy) increased the mean age due to the greater recycling of air parcels through the middle atmosphere, via the residual circulation, before returning to the troposphere. However, increasing K(sub yy) along with self-consistent increases in the corresponding planetary wave drive, which leads to a stronger residual circulation, more than compensates for the K(sub yy)-effect, and produces significantly younger ages throughout the stratosphere. Simulations with very small tropical stratospheric K(sub yy) decreased the globally averaged age of air by as much as 25% in the middle and upper stratosphere, and resulted in substantially weaker vertical age gradients above 20 km in the extratropics. We found only very small stratospheric tracer sensitivity to the magnitude of the horizontal mixing across the tropopause, and to the strength of the mesospheric gravity wave drag and diffusion used in the model. We also investigated the transport influence on chemically active tracers and found a strong age-tracer correlation, both in concentration and calculated lifetimes. The base model transport gives the most favorable overall comparison with a variety of inert tracer observations, and provides a significant improvement over our previous 1995 model transport. Moderate changes to the base transport were found to provide modest agreement with some of the measurements. Transport scenarios with residence times ranging from moderately shorter to slightly longer relative to the base case simulated N2O lifetimes
Munbodh, Reshma; Tagare, Hemant D.; Chen Zhe; Jaffray, David A.; Moseley, Douglas J.; Knisely, Jonathan P. S.; Duncan, James S.
2009-10-15
Purpose: In external beam radiation therapy of pelvic sites, patient setup errors can be quantified by registering 2D projection radiographs acquired during treatment to a 3D planning computed tomograph (CT). We present a 2D-3D registration framework based on a statistical model of the intensity values in the two imaging modalities. Methods: The model assumes that intensity values in projection radiographs are independently but not identically distributed due to the nonstationary nature of photon counting noise. Two probability distributions are considered for the intensity values: Poisson and Gaussian. Using maximum likelihood estimation, two similarity measures, maximum likelihood with a Poisson (MLP) and maximum likelihood with Gaussian (MLG), distribution are derived. Further, we investigate the merit of the model-based registration approach for data obtained with current imaging equipment and doses by comparing the performance of the similarity measures derived to that of the Pearson correlation coefficient (ICC) on accurately collected data of an anthropomorphic phantom of the pelvis and on patient data. Results: Registration accuracy was similar for all three similarity measures and surpassed current clinical requirements of 3 mm for pelvic sites. For pose determination experiments with a kilovoltage (kV) cone-beam CT (CBCT) and kV projection radiographs of the phantom in the anterior-posterior (AP) view, registration accuracies were 0.42 mm (MLP), 0.29 mm (MLG), and 0.29 mm (ICC). For kV CBCT and megavoltage (MV) AP portal images of the same phantom, registration accuracies were 1.15 mm (MLP), 0.90 mm (MLG), and 0.69 mm (ICC). Registration of a kV CT and MV AP portal images of a patient was successful in all instances. Conclusions: The results indicate that high registration accuracy is achievable with multiple methods including methods that are based on a statistical model of a 3D CT and 2D projection images.
Comparison of 2-D and 3-D models of grid erosion in an ion thruster
NASA Technical Reports Server (NTRS)
Peng, Xiaohang; Ruyten, Wilhelmus M.; Keefer, Dennis
1991-01-01
Numerical results of particle-in-cell/Monte Carlo calculations of accelerator grid erosion in an ion thruster are presented. Specifically, it is shown that a three-dimensional model is required to account for the experimentally observed pitting of the accelerator grid between grid apertures. Some comparisons with earlier two-dimensional, axisymmetric model are made, and it is shown that, for identical operating conditions of the thruster, the wear-through time in the three-dimensional model is about two to three times higher than that obtained previously with the two-dimensional model, namely on the order of 10,000 hours for sample calculation.
NASA Astrophysics Data System (ADS)
Filipović, Vilim; Romić, Davor; Romić, Marija; Matijević, Lana; Mallmann, Fábio J. K.; Robinson, David A.
2016-04-01
Growing vegetables commercially requires intensive management and involves high irrigation demands and input of agrochemicals. Plastic mulch application in combination with drip irrigation is a common agricultural management technique practiced due to variety of benefits to the crop, mostly vegetable biomass production. However, the use of these techniques can result in various impacts on water and nutrient distribution in underlying soil and consequently affect nutrient leaching towards groundwater resources. The aim of this work is to estimate the effect of plastic mulch cover in combination with drip irrigation on water and nitrate dynamics in soil using HYDRUS-2D model. The field site was located in Croatian costal karst area on a Gleysol (WRB). The experiment was designed according to the split-plot design in three repetitions and was divided into plots with plastic mulch cover (MULCH) and control plots with bare soil (CONT). Each of these plots received applications of three levels of nitrogen fertilizer: 70, 140, and 210 kg per ha. All plots were equipped with drip irrigation and cropped with bell pepper (Capsicum annuum L. cv. Bianca F1). Lysimeters were installed at 90 cm depth in all plots and were used for monitoring the water and nitrate outflow. HYDRUS-2D was used for modeling the water and nitrogen outflow in the MULCH and CONT plots, implementing the proper boundary conditions. HYDRUS-2D simulated results showed good fitting to the field site observed data in both cumulative water and nitrate outflow, with high level of agreement. Water flow simulations produced model efficiency of 0.84 for CONT and 0.56 for MULCH plots, while nitrate simulations showed model efficiency ranging from 0.67 to 0.83 and from 0.70 to 0.93, respectively. Additional simulations were performed with the absence of the lysimeter, revealing faster transport of nitrates below drip line in the CONT plots, mostly because of the increased surface area subjected to precipitation
Collective Flocking Dynamics: Long Rang Order in a Non-Equilibrium 2D XY Model
NASA Astrophysics Data System (ADS)
Tu, Yuhai
1996-03-01
We propose and study a non-equilibrium continuum dynamical model for the collective motion of large groups of biological organisms (e.g., flocks of birds, slime molds, schools of fishs, etc.) (J. Toner and Y. Tu, Phys. Rev. Lett.), 75(23), 4326(1995) Our model becomes highly non-trivial, and different from the equilibrium model, for d
Li, Yunfeng; Pizlo, Zygmunt; Steinman, Robert M
2009-05-01
Human beings perceive 3D shapes veridically, but the underlying mechanisms remain unknown. The problem of producing veridical shape percepts is computationally difficult because the 3D shapes have to be recovered from 2D retinal images. This paper describes a new model, based on a regularization approach, that does this very well. It uses a new simplicity principle composed of four shape constraints: viz., symmetry, planarity, maximum compactness and minimum surface. Maximum compactness and minimum surface have never been used before. The model was tested with random symmetrical polyhedra. It recovered their 3D shapes from a single randomly-chosen 2D image. Neither learning, nor depth perception, was required. The effectiveness of the maximum compactness and the minimum surface constraints were measured by how well the aspect ratio of the 3D shapes was recovered. These constraints were effective; they recovered the aspect ratio of the 3D shapes very well. Aspect ratios recovered by the model were compared to aspect ratios adjusted by four human observers. They also adjusted aspect ratios very well. In those rare cases, in which the human observers showed large errors in adjusted aspect ratios, their errors were very similar to the errors made by the model. PMID:18621410
FireStem2D – A Two-Dimensional Heat Transfer Model for Simulating Tree Stem Injury in Fires
Chatziefstratiou, Efthalia K.; Bohrer, Gil; Bova, Anthony S.; Subramanian, Ravishankar; Frasson, Renato P. M.; Scherzer, Amy; Butler, Bret W.; Dickinson, Matthew B.
2013-01-01
FireStem2D, a software tool for predicting tree stem heating and injury in forest fires, is a physically-based, two-dimensional model of stem thermodynamics that results from heating at the bark surface. It builds on an earlier one-dimensional model (FireStem) and provides improved capabilities for predicting fire-induced mortality and injury before a fire occurs by resolving stem moisture loss, temperatures through the stem, degree of bark charring, and necrotic depth around the stem. We present the results of numerical parameterization and model evaluation experiments for FireStem2D that simulate laboratory stem-heating experiments of 52 tree sections from 25 trees. We also conducted a set of virtual sensitivity analysis experiments to test the effects of unevenness of heating around the stem and with aboveground height using data from two studies: a low-intensity surface fire and a more intense crown fire. The model allows for improved understanding and prediction of the effects of wildland fire on injury and mortality of trees of different species and sizes. PMID:23894599
Simulation of Ultra-Small MOSFETs Using a 2-D Quantum-Corrected Drift-Diffusion Model
NASA Technical Reports Server (NTRS)
Biegal, Bryan A.; Rafferty, Connor S.; Yu, Zhiping; Ancona, Mario G.; Dutton, Robert W.; Saini, Subhash (Technical Monitor)
1998-01-01
The continued down-scaling of electronic devices, in particular the commercially dominant MOSFET, will force a fundamental change in the process of new electronics technology development in the next five to ten years. The cost of developing new technology generations is soaring along with the price of new fabrication facilities, even as competitive pressure intensifies to bring this new technology to market faster than ever before. To reduce cost and time to market, device simulation must become a more fundamental, indeed dominant, part of the technology development cycle. In order to produce these benefits, simulation accuracy must improve markedly. At the same time, device physics will become more complex, with the rapid increase in various small-geometry and quantum effects. This work describes both an approach to device simulator development and a physical model which advance the effort to meet the tremendous electronic device simulation challenge described above. The device simulation approach is to specify the physical model at a high level to a general-purpose (but highly efficient) partial differential equation solver (in this case PROPHET, developed by Lucent Technologies), which then simulates the model in 1-D, 2-D, or 3-D for a specified device and test regime. This approach allows for the rapid investigation of a wide range of device models and effects, which is certainly essential for device simulation to catch up with, and then stay ahead of, electronic device technology of the present and future. The physical device model used in this work is the density-gradient (DG) quantum correction to the drift-diffusion model [Ancona, Phys. Rev. B 35(5), 7959 (1987)]. This model adds tunneling and quantum smoothing of carrier density profiles to the drift-diffusion model. We used the DG model in 1-D and 2-D (for the first time) to simulate both bipolar and unipolar devices. Simulations of heavily-doped, short-base diodes indicated that the DG quantum
Interface localization in the 2D Ising model with a driven line
NASA Astrophysics Data System (ADS)
Cohen, O.; Mukamel, D.
2016-04-01
We study the effect of a one-dimensional driving field on the interface between two coexisting phases in a two dimensional model. This is done by considering an Ising model on a cylinder with Glauber dynamics in all sites and additional biased Kawasaki dynamics in the central ring. Based on the exact solution of the two-dimensional Ising model, we are able to compute the phase diagram of the driven model within a special limit of fast drive and slow spin flips in the central ring. The model is found to exhibit two phases where the interface is pinned to the central ring: one in which it fluctuates symmetrically around the central ring and another where it fluctuates asymmetrically. In addition, we find a phase where the interface is centered in the bulk of the system, either below or above the central ring of the cylinder. In the latter case, the symmetry breaking is ‘stronger’ than that found in equilibrium when considering a repulsive potential on the central ring. This equilibrium model is analyzed here by using a restricted solid-on-solid model.
A Coupled Finite-Volume Model for 2-D Surface and 3-D Subsurface Flows
Technology Transfer Automated Retrieval System (TEKTRAN)
Surface-subsurface interactions are an intrinsic component of the hydrologic response within a watershed; therefore, hydrologic modeling tools should consider these interactions to provide reliable predictions, especially during rainfall-runoff processes. This paper presents a fully implicit coupled...
A 2D stochastic micro-macro model of equiaxed eutectic solidification
NASA Astrophysics Data System (ADS)
Charbon, Ch; LeSar, R.
1997-01-01
We propose a model of equiaxed eutectic solidification that couples macroscopic heat diffusion with a microscopic description of nucleation and growth of the eutectic grains. The heat equation is solved numerically by means of an implicit finite difference method. The evolution of solid fraction is deduced from a stochastic model of nucleation and growth which uses the local temperature (interpolated from the FDM mesh) to determine the local grain density and the local growth rate. The model predicts the evaluations of both temperature and solid fraction at any point of the sample. Moreover, a realistic appearance of the recalescence on the cooling curves, as well as a detailed picture of the microstructure, are predicted. We apply the model to the solidification of grey cast iron.
A 2D analytical cylindrical gate tunnel FET (CG-TFET) model: impact of shortest tunneling distance
NASA Astrophysics Data System (ADS)
Dash, S.; Mishra, G. P.
2015-09-01
A 2D analytical tunnel field-effect transistor (FET) potential model with cylindrical gate (CG-TFET) based on the solution of Laplace’s equation is proposed. The band-to-band tunneling (BTBT) current is derived by the help of lateral electric field and the shortest tunneling distance. However, the analysis is extended to obtain the subthreshold swing (SS) and transfer characteristics of the device. The dependency of drain current, SS and transconductance on gate voltage and shortest tunneling distance is discussed. Also, the effect of scaling the gate oxide thickness and the cylindrical body diameter on the electrical parameters of the device is analyzed.
Performance of Replica-Exchange Wang-Landau Sampling for the 2D Ising Model: A Brief Survey
Zhao, Yiwei; Cheung, Siu Wun; Li, Ying Wai; Eisenbach, Markus
2014-01-01
We report a brief performance study of the replica-exchange Wang-Landau algorithm, a recently proposed parallel realization of Wang-Landau sampling, using the 2D Ising model as a test case. The simulation time is found to scale inversely with the square root of the number of subwindows (and thus number of processors) used to span the global parameter space. We also investigate the time profiles for random walkers in dierent subwindows to complete iterations, which will aid the development of and adaptive load-balancing scheme.
Baryon acoustic oscillations in 2D: Modeling redshift-space power spectrum from perturbation theory
Taruya, Atsushi; Nishimichi, Takahiro; Saito, Shun
2010-09-15
We present an improved prescription for the matter power spectrum in redshift space taking proper account of both nonlinear gravitational clustering and redshift distortion, which are of particular importance for accurately modeling baryon acoustic oscillations (BAOs). Contrary to the models of redshift distortion phenomenologically introduced but frequently used in the literature, the new model includes the corrections arising from the nonlinear coupling between the density and velocity fields associated with two competitive effects of redshift distortion, i.e., Kaiser and Finger-of-God effects. Based on the improved treatment of perturbation theory for gravitational clustering, we compare our model predictions with the monopole and quadrupole power spectra of N-body simulations, and an excellent agreement is achieved over the scales of BAOs. Potential impacts on constraining dark energy and modified gravity from the redshift-space power spectrum are also investigated based on the Fisher-matrix formalism, particularly focusing on the measurements of the Hubble parameter, angular diameter distance, and growth rate for structure formation. We find that the existing phenomenological models of redshift distortion produce a systematic error on measurements of the angular diameter distance and Hubble parameter by 1%-2%, and the growth-rate parameter by {approx}5%, which would become non-negligible for future galaxy surveys. Correctly modeling redshift distortion is thus essential, and the new prescription for the redshift-space power spectrum including the nonlinear corrections can be used as an accurate theoretical template for anisotropic BAOs.
Multi-level model for 2D human motion analysis and description
NASA Astrophysics Data System (ADS)
Foures, Thomas; Joly, Philippe
2003-01-01
This paper deals with the proposition of a model for human motion analysis in a video. Its main caracteristic is to adapt itself automatically to the current resolution, the actual quality of the picture, or the level of precision required by a given application, due to its possible decomposition into several hierarchical levels. The model is region-based to address some analysis processing needs. The top level of the model is only defined with 5 ribbons, which can be cut into sub-ribbons regarding to a given (or an expected) level of details. Matching process between model and current picture consists in the comparison of extracted subject shape with a graphical rendering of the model built on the base of some computed parameters. The comparison is processed by using a chamfer matching algorithm. In our developments, we intend to realize a platform of interaction between a dancer and tools synthetizing abstract motion pictures and music in the conditions of a real-time dialogue between a human and a computer. In consequence, we use this model in a perspective of motion description instead of motion recognition: no a priori gestures are supposed to be recognized as far as no a priori application is specially targeted. The resulting description will be made following a Description Scheme compliant with the movement notation called "Labanotation".
New urban area flood model: a comparison with MIKE11-quasi2d
NASA Astrophysics Data System (ADS)
Sole, A.; Zuccaro, G.
2005-08-01
Recent hydrogeological events have increased both public interest and that of the Scientific Community in a more accurate study of flooding in urban areas. The present project proposes a new model which offers an optimal integration of two models, one for flood wave propagation in riverbeds and the other for flooding in urban areas. We consider it necessary to not only treat the modelling of the outflow in riverbeds and outside riverbeds.together but to integrate them thoroughly. We simulate the propagation in riverbed of the flood event with a model solving the equations of De Saint Venant with the explicit scheme at the finite differences by McCormack. The propagation outside the riverbed is simulated using an algorithm proposed by Braschi et al. (1990). This algorithm is based on a local discretization of the urban territory, divided in a series of "tanks" and "channels". Each tank is associated with an area of an extension related to the position of the other tanks and the quantity of buildings, modelled as insurmountable obstacles. The model facilitates the simultaneous performance of the two simulations: at each instant, the quantitiy of water overflow, depending on the piezometric level in every section, is calculated as a function of the dimensions of the weirs (the banks), assuming it passes through the critical state. Then, it is transferred to the tanks placed in the surroundings of the overflow points. Those points are the starting nodes for the propagation of the flood because they are connected to the network of tanks in which the surrounding land has been schematised. In this paper, we present a comparison of one of the most powerful models of inundation simulation in urban and no-urban areas. The field area is the city of Albenga (SV, Italy) and the simulated event is the inundation of the 1994 (return period of about 25 years).
The Pott's puffy tumor: a dangerous sign for intracranial complications.
Ketenci, Ibrahim; Unlü, Yaşar; Tucer, Bülent; Vural, Alperen
2011-12-01
The Pott's puffy tumor is a subperiosteal abscess of the frontal bone associated with osteomyelitis. The purpose of this article is to alert the physician to the severe complications of this entity. The records of six patients were reviewed retrospectively. There were four adults and two adolescents. Nasal endoscopy showed edematous, polypoid mucosa in middle meatus in three and nasal polyps in the rest. At initial admission, two had orbital subperiosteal abscess, but normal cranial CT findings. During hospitalization, three experienced frontal lobe abscess and one frontal cerebritis. Endoscopic sinus surgery was performed in all with external drainage of Pott's puffy tumor in addition to antibiotherapy. Three patients underwent craniotomy/craniectomy for removal of frontal lobe abscesses. One patient with frontal lobe abscess died. Pott's puffy tumor may result in potentially dangerous intracranial complications. Early diagnosis and treatment are essential to reduce morbidity and mortality. PMID:21660452
SIMULATION REAL SCALE EXPERIMENT ON LEVEE BREACH USING 2D SHALLOW FLOW MODEL
NASA Astrophysics Data System (ADS)
Zenno, Hiroki; Iwasaki, Toshiki; Shimizu, Yasuyuki; Kimura, Ichiro
Flood in rivers is a common disaster all over the world. If a levee breach happens, it sometimes causes a fatal disaster. In addition, many buildings, urban facilities, lifelines, etc. are seriously damaged. Detailed mechanism of a levee breach has not been clarified yet. Therefore, it is important to predict the collapsing process of riverbank and behavior of overtop flow for reducing damage. We applied a two-dimensional shallow flow computational model to levee breach phenomena caused by overflow and the performance of the model was elucidated. A calibration of the numerical model is made through the comparison with field experimental data. Recently, a real-scale experiment on a levee breach was carried out at the Chiyoda Experimental Channel in Hokkaido, Japan. We performed the computation under the same conditions in the experiment. The computational results showed the excellent performance for simulating levee breach phenomena.
Pangolin v1.0, a conservative 2-D transport model for large scale parallel calculation
NASA Astrophysics Data System (ADS)
Praga, A.; Cariolle, D.; Giraud, L.
2014-07-01
To exploit the possibilities of parallel computers, we designed a large-scale bidimensional atmospheric transport model named Pangolin. As the basis for a future chemistry-transport model, a finite-volume approach was chosen both for mass preservation and to ease parallelization. To overcome the pole restriction on time-steps for a regular latitude-longitude grid, Pangolin uses a quasi-area-preserving reduced latitude-longitude grid. The features of the regular grid are exploited to improve parallel performances and a custom domain decomposition algorithm is presented. To assess the validity of the transport scheme, its results are compared with state-of-the-art models on analytical test cases. Finally, parallel performances are shown in terms of strong scaling and confirm the efficient scalability up to a few hundred of cores.
Simulating HFIR Core Thermal Hydraulics Using 3D-2D Model Coupling
Travis, Adam R; Freels, James D; Ekici, Kivanc
2013-01-01
A model utilizing interdimensional variable coupling is presented for simulating the thermal hydraulic interactions of the High Flux Isotope Reactor (HFIR) core at Oak Ridge National Laboratory (ORNL). The model s domain consists of a single, explicitly represented three-dimensional fuel plate and a simplified two-dimensional coolant channel slice. In simplifying the coolant channel, and thus the number of mesh points in which the Navier-Stokes equations must be solved, the computational cost and solution time are both greatly reduced. In order for the reduced-dimension coolant channel to interact with the explicitly represented fuel plate, however, interdimensional variable coupling must be enacted along all shared boundaries. The primary focus of this paper is in detailing the collection, storage, passage, and application of variables across this interdimensional interface. Comparisons are made showing the general speed-up associated with this simplified coupled model.
Global existence for a model of inhomogeneous incompressible elastodynamics in 2D
NASA Astrophysics Data System (ADS)
Yin, Silu
2016-05-01
In this paper, we investigate a model of incompressible, isotropic, inhomogeneous elastodynamics in two space dimensions, inspired by Lei in [18]. We prove the global existence for this Cauchy problem with sufficiently small initial displacement and small density disturbance around constant.
2D stochastic-integral models for characterizing random grain noise in titanium alloys
Sabbagh, Harold A.; Murphy, R. Kim; Sabbagh, Elias H.; Cherry, Matthew; Pilchak, Adam; Knopp, Jeremy S.; Blodgett, Mark P.
2014-02-18
We extend our previous work, in which we applied high-dimensional model representation (HDMR) and analysis of variance (ANOVA) concepts to the characterization of a metallic surface that has undergone a shot-peening treatment to reduce residual stresses, and has, therefore, become a random conductivity field. That example was treated as a onedimensional problem, because those were the only data available. In this study, we develop a more rigorous two-dimensional model for characterizing random, anisotropic grain noise in titanium alloys. Such a model is necessary if we are to accurately capture the 'clumping' of crystallites into long chains that appear during the processing of the metal into a finished product. The mathematical model starts with an application of the Karhunen-Loève (K-L) expansion for the random Euler angles, θ and φ, that characterize the orientation of each crystallite in the sample. The random orientation of each crystallite then defines the stochastic nature of the electrical conductivity tensor of the metal. We study two possible covariances, Gaussian and double-exponential, which are the kernel of the K-L integral equation, and find that the double-exponential appears to satisfy measurements more closely of the two. Results based on data from a Ti-7Al sample will be given, and further applications of HDMR and ANOVA will be discussed.
An Inexpensive 2-D and 3-D Model of the Sarcomere as a Teaching Aid
ERIC Educational Resources Information Center
Rios, Vitor Passos; Bonfim, Vanessa Maria Gomes
2013-01-01
To address a common problem of teaching the sliding filament theory (that is, students have difficulty in visualizing how the component proteins of the sarcomere differ, how they organize themselves into a single working unit, and how they function in relation to each other), we have devised a simple model, with inexpensive materials, to be built…
Edge gradients evaluation for 2D hybrid finite volume method model
Technology Transfer Automated Retrieval System (TEKTRAN)
In this study, a two-dimensional depth-integrated hydrodynamic model was developed using FVM on a hybrid unstructured collocated mesh system. To alleviate the negative effects of mesh irregularity and non-uniformity, a conservative evaluation method for edge gradients based on the second-order Tayl...
Hard Copy to Digital Transfer: 3D Models that Match 2D Maps
ERIC Educational Resources Information Center
Kellie, Andrew C.
2011-01-01
This research describes technical drawing techniques applied in a project involving digitizing of existing hard copy subsurface mapping for the preparation of three dimensional graphic and mathematical models. The intent of this research was to identify work flows that would support the project, ensure the accuracy of the digital data obtained,…
A 2-D Interface Element for Coupled Analysis of Independently Modeled 3-D Finite Element Subdomains
NASA Technical Reports Server (NTRS)
Kandil, Osama A.
1998-01-01
Over the past few years, the development of the interface technology has provided an analysis framework for embedding detailed finite element models within finite element models which are less refined. This development has enabled the use of cascading substructure domains without the constraint of coincident nodes along substructure boundaries. The approach used for the interface element is based on an alternate variational principle often used in deriving hybrid finite elements. The resulting system of equations exhibits a high degree of sparsity but gives rise to a non-positive definite system which causes difficulties with many of the equation solvers in general-purpose finite element codes. Hence the global system of equations is generally solved using, a decomposition procedure with pivoting. The research reported to-date for the interface element includes the one-dimensional line interface element and two-dimensional surface interface element. Several large-scale simulations, including geometrically nonlinear problems, have been reported using the one-dimensional interface element technology; however, only limited applications are available for the surface interface element. In the applications reported to-date, the geometry of the interfaced domains exactly match each other even though the spatial discretization within each domain may be different. As such, the spatial modeling of each domain, the interface elements and the assembled system is still laborious. The present research is focused on developing a rapid modeling procedure based on a parametric interface representation of independently defined subdomains which are also independently discretized.
A simplified 2D model for meander migration with physically-based bank evolution
Technology Transfer Automated Retrieval System (TEKTRAN)
The migration rate calculated by numerical models of river meandering is commonly based on a method that relates migration rate to near-bank excess velocity multiplied by a dimensionless coefficient. Notwithstanding its simplicity, since the early 1980s this method has provided important insight int...
Nonlinear state-space modeling of human motion using 2-D marker observations.
Vartiainen, Paavo; Bragge, Timo; Arokoski, Jari P; Karjalainen, Pasi A
2014-07-01
A novel method for the estimation of human kinematics, based on state-space modeling, is proposed. The state consists of the positions, orientations, velocities, and accelerations of an articulated model. Estimation is performed using the unscented Kalman filter (UKF) algorithm with a fixed-interval smoother. Impulsive acceleration at floor contact of the foot is estimated by implementing a contact constraint in the UKF evolution model. The constraint inserts an acceleration impulse into the model state. The estimation method was applied to marker-based motion analysis in a motion laboratory. Validation measurements were performed with a rigid test device and with human gait. A triaxial accelerometer was used to evaluate acceleration estimates. Comparison between the proposed method and the extended Kalman smoother showed a clear difference in the quality of estimates during impulsive accelerations. The proposed approach enables estimation of human kinematics during both continuous and transient accelerations. The approach provides a novel way of estimating acceleration at foot initial contact, and thus enables more accurate evaluation of loading from the beginning of the floor contact. PMID:24760898
Dynamic Linkages Between the Transition Zone & Surface Plate Motions in 2D Models of Subduction
NASA Astrophysics Data System (ADS)
Arredondo, K.; Billen, M. I.
2013-12-01
While slab pull is considered the dominant force controlling plate motion and speed, its magnitude is controlled by slab behavior in the mantle, where tomographic studies show a wide range of possibilities from direct penetration to folding, or stagnation directly above the lower mantle (e.g. Fukao et al., 2009). Geodynamic studies have investigated various parameters, such as plate age and two phase transitions, to recreate observed behavior (e.g. Běhounková and Cízková, 2008). However, past geodynamic models have left out known slab characteristics that may have a large impact on slab behavior and our understanding of subduction processes. Mineral experiments and seismic observations have indicated the existence of additional phase transitions in the mantle transition zone that may produce buoyancy forces large enough to affect the descent of a subducting slab (e.g. Ricard et al., 2005). The current study systematically tests different common assumptions used in geodynamic models: kinematic versus free-slip boundary conditions, the effects of adiabatic heating, viscous dissipation and latent heat, compositional layering and a more complete suite of phase transitions. Final models have a complete energy equation, with eclogite, harzburgite and pyrolite lithosphere compositional layers, and seven composition-dependent phase transitions within the olivine, pyroxene and garnet polymorph minerals. Results show important feedback loops between different assumptions and new behavior from the most complete models. Kinematic models show slab weakening or breaking above the 660 km boundary and between compositional layers. The behavior in dynamic models with a free-moving trench and overriding plate is compared to the more commonly found kinematic models. The new behavior may have important implications for the depth distribution of deep earthquakes within the slab. Though the thermodynamic parameters of certain phase transitions may be uncertain, their presence and
Application of 2D-Nonlinear Shallow Water Model of Tsunami by using Adomian Decomposition Method
Waewcharoen, Sribudh; Boonyapibanwong, Supachai; Koonprasert, Sanoe
2008-09-01
One of the most important questions in tsunami modeling is the estimation of tsunami run-up heights at different points along a coastline. Methods for numerical simulation of tsunami wave propagation in deep and shallow seas are well developed and have been widely used by many scientists (2001-2008). In this paper, we consider a two-dimensional nonlinear shallow water model of tsunami given by Tivon Jacobson is work [1]. u{sub t}+uu{sub x}+{nu}u{sub y} -c{sup 2}(h{sub x}+(h{sub b}){sub x}) {nu}{sub t}+u{nu}{sub x}+{nu}{nu}{sub y} = -c{sup 2}(h{sub y}+(h{sub b}){sub y}) h{sub t}+(hu){sub x}+(h{nu}){sub y} = 0 g-shore, h is surface elevation and s, t is time, u is velocity of cross-shore, {nu} is velocity of along-shore, h is surface elevation and h{sub b} is function of shore. This is a nondimensionalized model with the gravity g and constant reference depth H factored into c = {radical}(gH). We apply the Adomian Decompostion Method (ADM) to solve the tsunami model. This powerful method has been used to obtain explicit and numerical solutions of three types of diffusion-convection-reaction (DECR) equations. The ADM results for the tsunami model yield analytical solutions in terms of a rapidly convergent infinite power series. Symbolic computation, numerical results and graphs of solutions are obtained by Maple program.
Magmatism vs mushmatism: 2D thermo-mechanical modelling of crustal mush processes
NASA Astrophysics Data System (ADS)
Roele, K.; Morgan, J. V.; Jackson, M.
2015-12-01
The concept of 'mushmatism'- that a magma chamber resides in a crystalline state for the majority of its life, has been suggested as a plausible mechanism for observed crustal melt evolution. It is proposed that as melt is generated, its composition evolves as it rises buoyantly, reacting chemically with the surrounding crystal mush at progressively lower temperatures. It is therefore possible to explain formation of granitic melts and observed mafic-felsic layering in the crust using mush processes. It has previously been assumed that a high influx rate of molten material is required for large volumes of crustal melt to be produced. This has been modelled in the past with repetitive sill intrusion at unrealistically high rates (>3x107 m3a-1) to cause a large enough thermal perturbation of the geotherm to sustain eruptible melt in the shallow crust. However, these models are purely thermal and neglect the effects of melt segregation and mush processes on longevity of melt volumes in the crust. We have developed an axisymmetric thermo-mechanical model that includes mass transport described by coupled matrix compaction and buoyant melt segregation during repeated sill intrusion. Results are consistent with thermal models in that they demonstrate dominance of crystalline mush processes in the transient magma chamber at low-to-moderate intrusion rates. However, addition of buoyant segregation leads to formation of discrete high melt fraction layers as melt ascends through the emplacement zone. This causes a decoupling in location of maximum temperature and melt fraction not observed by purely thermal models. Our results therefore have significant implications for current methods of interpretation of geophysical data, in particular, calculating melt volumes and determining the depth of the magma chamber. In addition, transient reservoirs are produced at lower emplacement rates by the thermo-mechanical model because accumulated magma is evolved and able to remain liquid
A Survey on Model Based Approaches for 2D and 3D Visual Human Pose Recovery
Perez-Sala, Xavier; Escalera, Sergio; Angulo, Cecilio; Gonzàlez, Jordi
2014-01-01
Human Pose Recovery has been studied in the field of Computer Vision for the last 40 years. Several approaches have been reported, and significant improvements have been obtained in both data representation and model design. However, the problem of Human Pose Recovery in uncontrolled environments is far from being solved. In this paper, we define a general taxonomy to group model based approaches for Human Pose Recovery, which is composed of five main modules: appearance, viewpoint, spatial relations, temporal consistence, and behavior. Subsequently, a methodological comparison is performed following the proposed taxonomy, evaluating current SoA approaches in the aforementioned five group categories. As a result of this comparison, we discuss the main advantages and drawbacks of the reviewed literature. PMID:24594613
Multi-particle FEM modeling on microscopic behavior of 2D particle compaction
NASA Astrophysics Data System (ADS)
Zhang, Y. X.; An, X. Z.; Zhang, Y. L.
2015-03-01
In this paper, the discrete random packing and various ordered packings such as tetragonal and hexagonal close packed structures generated by discrete element method and honeycomb, which is manually generated were input as the initial packing structures into the multi-particle finite element model (FEM) to study their densification during compaction, where each particle is discretized as a FEM mesh. The macro-property such as relative density and micro-properties such as local morphology, stress, coordination number and densification mechanism obtained from various initial packings are characterized and analyzed. The results show that the coupling of discrete feature in particle scale with the continuous FEM in macro-scale can effectively conquer the difficulties in traditional FEM modeling, which provides a reasonable way to reproduce the compaction process and identify the densification mechanism more accurately and realistically.
Stability of Solitary Waves and Vortices in a 2D Nonlinear Dirac Model
NASA Astrophysics Data System (ADS)
Cuevas-Maraver, Jesús; Kevrekidis, Panayotis G.; Saxena, Avadh; Comech, Andrew; Lan, Ruomeng
2016-05-01
We explore a prototypical two-dimensional massive model of the nonlinear Dirac type and examine its solitary wave and vortex solutions. In addition to identifying the stationary states, we provide a systematic spectral stability analysis, illustrating the potential of spinor solutions to be neutrally stable in a wide parametric interval of frequencies. Solutions of higher vorticity are generically unstable and split into lower charge vortices in a way that preserves the total vorticity. These conclusions are found not to be restricted to the case of cubic two-dimensional nonlinearities but are found to be extended to the case of quintic nonlinearity, as well as to that of three spatial dimensions. Our results also reveal nontrivial differences with respect to the better understood nonrelativistic analogue of the model, namely the nonlinear Schrödinger equation.
Mixed-RKDG Finite Element Methods for the 2-D Hydrodynamic Model for Semiconductor Device Simulation
Chen, Zhangxin; Cockburn, Bernardo; Jerome, Joseph W.; Shu, Chi-Wang
1995-01-01
In this paper we introduce a new method for numerically solving the equations of the hydrodynamic model for semiconductor devices in two space dimensions. The method combines a standard mixed finite element method, used to obtain directly an approximation to the electric field, with the so-called Runge-Kutta Discontinuous Galerkin (RKDG) method, originally devised for numerically solving multi-dimensional hyperbolic systems of conservation laws, which is applied here to the convective part of the equations. Numerical simulations showing the performance of the new method are displayed, and the results compared with those obtained by using Essentially Nonoscillatory (ENO) finite difference schemes. Frommore » the perspective of device modeling, these methods are robust, since they are capable of encompassing broad parameter ranges, including those for which shock formation is possible. The simulations presented here are for Gallium Arsenide at room temperature, but we have tested them much more generally with considerable success.« less
A 2D Particle in Cell model for ion extraction and focusing in electrostatic accelerators
Veltri, P. Serianni, G.; Cavenago, M.
2014-02-15
Negative ions are fundamental to produce intense and high energy neutral beams used to heat the plasma in fusion devices. The processes regulating the ion extraction involve the formation of a sheath on a scale comparable to the Debye length of the plasma. On the other hand, the ion acceleration as a beam is obtained on distances greater than λ{sub D}. The paper presents a model for both the phases of ion extraction and acceleration of the ions and its implementation in a numerical code. The space charge of particles is deposited following usual Particle in Cell codes technique, while the field is solved with finite element methods. Some hypotheses on the beam plasma transition are described, allowing to model both regions at the same time. The code was tested with the geometry of the NIO1 negative ions source, and the results are compared with existing ray tracing codes and discussed.
Stability of Solitary Waves and Vortices in a 2D Nonlinear Dirac Model.
Cuevas-Maraver, Jesús; Kevrekidis, Panayotis G; Saxena, Avadh; Comech, Andrew; Lan, Ruomeng
2016-05-27
We explore a prototypical two-dimensional massive model of the nonlinear Dirac type and examine its solitary wave and vortex solutions. In addition to identifying the stationary states, we provide a systematic spectral stability analysis, illustrating the potential of spinor solutions to be neutrally stable in a wide parametric interval of frequencies. Solutions of higher vorticity are generically unstable and split into lower charge vortices in a way that preserves the total vorticity. These conclusions are found not to be restricted to the case of cubic two-dimensional nonlinearities but are found to be extended to the case of quintic nonlinearity, as well as to that of three spatial dimensions. Our results also reveal nontrivial differences with respect to the better understood nonrelativistic analogue of the model, namely the nonlinear Schrödinger equation. PMID:27284659
A hierarchical lattice spring model to simulate the mechanics of 2-D materials-based composites
NASA Astrophysics Data System (ADS)
Brely, Lucas; Bosia, Federico; Pugno, Nicola
2015-07-01
In the field of engineering materials, strength and toughness are typically two mutually exclusive properties. Structural biological materials such as bone, tendon or dentin have resolved this conflict and show unprecedented damage tolerance, toughness and strength levels. The common feature of these materials is their hierarchical heterogeneous structure, which contributes to increased energy dissipation before failure occurring at different scale levels. These structural properties are the key to exceptional bioinspired material mechanical properties, in particular for nanocomposites. Here, we develop a numerical model in order to simulate the mechanisms involved in damage progression and energy dissipation at different size scales in nano- and macro-composites, which depend both on the heterogeneity of the material and on the type of hierarchical structure. Both these aspects have been incorporated into a 2-dimensional model based on a Lattice Spring Model, accounting for geometrical nonlinearities and including statistically-based fracture phenomena. The model has been validated by comparing numerical results to continuum and fracture mechanics results as well as finite elements simulations, and then employed to study how structural aspects impact on hierarchical composite material properties. Results obtained with the numerical code highlight the dependence of stress distributions on matrix properties and reinforcement dispersion, geometry and properties, and how failure of sacrificial elements is directly involved in the damage tolerance of the material. Thanks to the rapidly developing field of nanocomposite manufacture, it is already possible to artificially create materials with multi-scale hierarchical reinforcements. The developed code could be a valuable support in the design and optimization of these advanced materials, drawing inspiration and going beyond biological materials with exceptional mechanical properties.
Intermittent Turbulence and SOC Dynamics in a 2-D Driven Current-Sheet Model
NASA Technical Reports Server (NTRS)
Klimas, A. J.; Uritsky, V.; Vinas, A. F.; Vassiliasdis, D.; Baker, D. N.
2005-01-01
Borovsky et al. have shown that Earth's magnetotail plasma sheet is strongly turbulent. More recently, Borovsky and Funsten have shown that eddy turbulence dominates and have suggested that the eddy turbulence is driven by fast flows that act as jets in the plasma. Through basic considerations of energy and magnetic flux conservation, these fast flows are thought to be localized to small portions of the total plasma sheet and to be generated by magnetic flux reconnection that is similarly localized. Angelopoulos et al., using single spacecraft Geotail data, have shown that the plasma sheet turbulence exhibits signs of intermittence and Weygand et al., using four spacecraft Cluster data, have confirmed and expanded on this conclusion. Uritsky et al., using Polar UVI image data, have shown that the evolution of bright, nightside, UV auroral emission regions is consistent with many of the properties of systems in self-organized criticality (SOC). Klimas et al. have suggested that the auroral dynamics is a reflection of the dynamics of the fast flows in the plasma. sheet. Their hypothesis is that the transport of magnetic fludenergy through the magnetotail is enabled by scale-free avalanches of localized reconnection whose SOC dynamics are reflected in the auroral UV emission dynamics. A corollary of this hypothesis is that the strong, intermittent, eddy turbulence of the plasma sheet is closely related to its critical dynamics. The question then arises: Can in situ evidence for the SOC dynamics be found in the properties of the plasma sheet turbulence? A 2-dimensional numerical driven current-sheet model of the central plasma sheet has been developed that incorporates an idealized current-driven instability with a resistive MHD system. It has been shown that the model can evolve into SOC in a physically relevant parameter regime. Initial results from a study of intermittent turbulence in this model and the relationship of this turbulence to the model's known SOC
Radar Reflectivity Simulated by a 2-D Spectra Bin Model: Sensitivity of Cloud-aerosol Interaction
NASA Technical Reports Server (NTRS)
Li, Kiaowen; Tao, Wei-Kuo; Khain, Alexander; Simpson, Joanne; Johnson, Daniel
2003-01-01
The Goddard Cumulus Ensemble (GCE) model with bin spectra microphysics is used to simulate mesoscale convective systems.The model uses explicit bins to represent size spectra of cloud nuclei, water drops, ice crystals, snow and graupel. Each hydrometeorite category is described by 33 mass bins. The simulations provide a unique data set of simulated raindrop size distribution in a realistic dynamic frame. Calculations of radar parameters using simulated drop size distribution serve as an evaluation of numerical model performance. In addition, the GCE bin spectra modes is a very useful tool to study uncertainties related to radar observations; all the environmental parameters are precisely known. In this presentation, we concentrate on the discussion of Z-R (ZDR-R) relation in the simulated systems. Due to computational limitations, the spectra bin model has been run in two dimensions with 31 stretched vertical layers and 1026 horizontal grid points (1 km resolution). Two different cases, one in midlatitude continent, the other in tropical ocean, have been simulated. The continental case is a strong convection which lasted for two hours. The oceanic case is a persistent system with more than 10 hours' life span. It is shown that the simulated Z-R (ZDR-R) relations generally agree with observations using radar and rain gauge data. The spatial and temporal variations of Z-R relation in different locations are also analyzed. Impact of aerosols on cloud formation and raindrop size distribution was studied. Both clean (low CCN) and dirty (high CCN) cases are simulated. The Z-R relation is shown to vary considerable in the initial CCN concentrations.
Impacts of Large-Scale Circulation on Convection: A 2-D Cloud Resolving Model Study
NASA Technical Reports Server (NTRS)
Li, X; Sui, C.-H.; Lau, K.-M.
1999-01-01
Studies of impacts of large-scale circulation on convection, and the roles of convection in heat and water balances over tropical region are fundamentally important for understanding global climate changes. Heat and water budgets over warm pool (SST=29.5 C) and cold pool (SST=26 C) were analyzed based on simulations of the two-dimensional cloud resolving model. Here the sensitivity of heat and water budgets to different sizes of warm and cold pools is examined.
NASA Astrophysics Data System (ADS)
Hue, V.; Greathouse, T. K.; Cavalié, T.; Dobrijevic, M.; Hersant, F.
2016-03-01
Saturn's axial tilt of 26.7° produces seasons in a similar way as on Earth. Both the stratospheric temperature and composition are affected by this latitudinally varying insolation along Saturn's orbital path. The atmospheric thermal structure is controlled and regulated by the amount of hydrocarbons in the stratosphere, which act as absorbers and coolants from the UV to the far-IR spectral range, and this structure has an influence on the amount of hydrocarbons. We study here the feedback between the chemical composition and the thermal structure by coupling a latitudinal and seasonal photochemical model with a radiative seasonal model. Our results show that the seasonal temperature peak in the higher stratosphere, associated with the seasonal increase of insolation, is shifted earlier than the maximum insolation peak. This shift is increased with increasing latitudes and is caused by the low amount of stratospheric coolants in the spring season. At 80° in both hemispheres, the temperature peak at 10-2 mbar is seen to occur half a season (3-4 Earth years) earlier than was previously predicted by radiative seasonal models that assumed spatially and temporally uniform distribution of coolants. This shift progressively decreases with increasing pressure, up to around the 0.5 mbar pressure level where it vanishes. On the opposite, the thermal field has a small feedback on the abundance distributions. Accounting for that feedback modifies the predicted equator-to-pole temperature gradient. The meridional gradients of temperature at the mbar pressure levels are better reproduced when this feedback is accounted for. At lower pressure levels, Saturn's stratospheric thermal structure seems to depart from pure radiative seasonal equilibrium as previously suggested by Guerlet et al. (2014). Although the agreement with the absolute value of the stratospheric temperature observed by Cassini is moderate, it is a mandatory step toward a fully coupled GCM-photochemical model.
Dynamic Linkages Between the Transition Zone & Surface Plate Motion in 2D Models of Subduction
NASA Astrophysics Data System (ADS)
Arredondo, K.; Billen, M. I.
2014-12-01
Subduction zones exhibit a wide range of behavior, from slab stagnation at 660 km to direct penetration into the lower mantle. Due to uncertainties in the tectonic history of individual subduction zones, such as trench velocities, potential mechanisms for controlling slab behavior in the transition zone are explored using numerical models. Numerical simulations have utilized a range of assumptions to improve computational efficiency, such as ignoring latent heat, ignoring compositional effects or fixing the trench location: the net effect of these assumptions resulting modeled dynamics remains unclear. Additionally the eight major, composition-dependent, phase transitions for pyrolite, harzburgite and eclogite may be an important influence on subducting slab dynamics due to the additional forces that are dependent on depth and compositional layering within the slab (e.g., Ricard et al., 2005). With the goal of developing more complete, self-consistent, and less idealized simulations, we test the importance of various factors on slab behavior: the presence of shear, adiabatic and latent heating, compositional layering, composition-dependent phase transitions and explicit plate speeds versus dynamically evolving plate and trench velocities. Preliminary results indicate that individual components have a relatively minor effect, but produce large changes when combined together. The extent of slab folding and stagnation is overestimated by only modeling the 410 and 660 km phase transitions. Dynamic models with all seven composition-dependent phase transitions are very sensitive to the plate strength and weak zone viscosity, causing large changes in plate speed and slab detachment. Changes to the overriding plate buoyance and strength investigate the origin and influence of trench movement on slab deformation. These feedbacks and parameter-sensitive behavior indicate that the wide range of observed slab behavior may result from subtle differences in plate and plate
Superdiffusive cell motility on 2D substrates modeled as a persistent Lévy walk
NASA Astrophysics Data System (ADS)
Passucci, Giuseppe; Brasch, Megan E.; Deakin, Nicholas O.; Turner, Christopher E.; Henderson, James H.; Manning, M. Lisa
Cell motility is an essential part of many biological processes such as morphogenesis, wound healing and tumorigenesis. We quantified cell motility by tracking mouse fibroblast and human breast carcinoma nuclei to construct cell trajectories. The mean-squared displacement of these trajectories reveals that cell motion is super diffusive, where displacements scale faster than t 1 / 2 in all directions. Existing self-propelled particle (SPP) models that do not explicitly incorporate ensemble heterogeneity are unable to predict this super-diffusive behavior. Therefore we developed a run-and-tumble SPP model with Levy distributed run times that captures observed super-diffusive behavior in the mean-squared displacement as well as scaling collapse exponents of displacement probability distributions which match those of mouse fibroblast and human breast carcinoma cell trajectories. We additionally introduced small fluctuations in particle orientation during runs, which generates a crossover from super-diffusive to diffusive dynamics at a very long times. This timescale can be extracted in experiments from the velocity auto-correlation function, allowing us to explicitly test this model prediction.
Dyson instability for 2D nonlinear O(N) sigma models
Meurice, Y.
2009-09-01
For lattice models with compact field integration (nonlinear sigma models over compact manifolds and gauge theories with compact groups) and satisfying some discrete symmetry, the change of sign of the bare coupling g{sub 0}{sup 2} at zero results in a mere discontinuity in the average energy rather than the catastrophic instability occurring in theories with integration over arbitrarily large fields. This indicates that the large order of perturbative series and the nonperturbative contributions should have unexpected features. Using the large-N limit of two-dimensional nonlinear O(N) sigma model, we discuss the complex singularities of the average energy for complex 't Hooft coupling {lambda}{sup t}=g{sub 0}{sup 2}N. A striking difference with the usual situation is the absence of the cut along the negative real axis. We show that the zeros of the partition function can only be inside a clover shape region of the complex {lambda}{sup t} plane. We calculate the density of states and use the result to verify numerically the statement about the zeros. We propose dispersive representations of the derivatives of the average energy for an approximate expression of the discontinuity. The discontinuity is purely nonperturbative and contributions at small negative coupling in one dispersive representation are essential to guarantee that the derivatives become exponentially small when {lambda}{sup t}{yields}0{sup +}. We discuss the implications for gauge theories.
2D numerical modelling of fluid percolation in the subduction zone
NASA Astrophysics Data System (ADS)
Dymkova, D.; Gerya, T.; Podladchikov, Y.
2012-04-01
Subducting slab dehydration and resulting aqueous fluid percolation triggers partial melting in the mantle wedge and is accompanied with the further melt percolation through the porous space to the region above the slab. This problem is a complex coupled chemical, thermal and mechanical process responsible for the magmatic arcs formation and change of the mantle wedge properties. We have created a two-dimensional model of a two-phase flow in a porous media solving a coupled Darcy-Stokes system of equations for two incompressible media for the case of nonlinear visco-plastic rheology of solid matrix. Our system of equation is expanded for the high-porosity limits and stabilized for the case of high porosity contrasts. We use a finite-difference method with fully staggered grid in a combination with marker-in-cell technique for advection of fluid and solid phase. We performed a comparison with a benchmark of a thermal convection in a porous media in a bottom-heated box to verify the interdependency of Rayleigh and Nusselt numbers with earlier obtained ones (Cherkaoui & Wilcock, 1999). We have demonstrated the stability and robustness of the algorithm in case of strongly non-linear visco-plastic rheology of solid including cases with localization of both deformation and porous flow along spontaneously forming shear bands. We have checked our model for the forming of localized porous channels under a simple shear stress (Katz et al, 2006). We have developed a setup of a self-initiating due to gravitational instability subduction. With our coupled fluid-solid flow we have achieved a self-consistent water downward suction by a slab bending predicted by the other models with a simplified fluid kinematical motion implementation (Faccenda et al, 2009). With this setup we have obtained a self-consistent upper crust weakening by a porous fluid pressure which was theoretically assumed in the previously existing subduction models (Gerya & Meilick, 2011; Faccenda et al, 2009
NASA Astrophysics Data System (ADS)
Noji, H.
This study investigates the losses in a two conducting-layer REBCO cable fabricated by researchers at Furukawa Electric Co. Ltd. The losses were calculated using a combination of my electric circuit (EC) model with a two-dimensional finite element method (2D FEM). The helical pitches of the tapes in each layer, P1 and P2, were adjusted to equalize the current in both cable layers, although the loss calculation assumed infinite helical pitches and the same current in each layer at first. The results showed that the losses depended on the relative tape-position angle between the layers (θ/θ'), because the vertical field between adjacent tapes in the same layer varied with θ/θ'. When simulating the real cable, the helical pitches were adjusted and the layer currents were calculated by the EC model. These currents were input to the 2D FEM to compute the losses. The losses changed along the cable length because the difference between P1 and P2 altered the θ/θ' along this direction. The average angle-dependent and position-dependent losses were equal and closely approximated the measured losses. As an example to reduce the loss in this cable, the angle and the helical pitches were fixed at θ/θ' = 0.5 and P1 = P2 = 100 mm (S-direction). The calculation with these conditions indicated that the loss is about one order of magnitude lower than the measurement.
NASA Astrophysics Data System (ADS)
Kalisperakis, I.; Stentoumis, Ch.; Grammatikopoulos, L.; Karantzalos, K.
2015-08-01
The indirect estimation of leaf area index (LAI) in large spatial scales is crucial for several environmental and agricultural applications. To this end, in this paper, we compare and evaluate LAI estimation in vineyards from different UAV imaging datasets. In particular, canopy levels were estimated from i.e., (i) hyperspectral data, (ii) 2D RGB orthophotomosaics and (iii) 3D crop surface models. The computed canopy levels have been used to establish relationships with the measured LAI (ground truth) from several vines in Nemea, Greece. The overall evaluation indicated that the estimated canopy levels were correlated (r2 > 73%) with the in-situ, ground truth LAI measurements. As expected the lowest correlations were derived from the calculated greenness levels from the 2D RGB orthomosaics. The highest correlation rates were established with the hyperspectral canopy greenness and the 3D canopy surface models. For the later the accurate detection of canopy, soil and other materials in between the vine rows is required. All approaches tend to overestimate LAI in cases with sparse, weak, unhealthy plants and canopy.
NASA Astrophysics Data System (ADS)
Elangovan, Premkumar; Warren, Lucy M.; Mackenzie, Alistair; Rashidnasab, Alaleh; Diaz, Oliver; Dance, David R.; Young, Kenneth C.; Bosmans, Hilde; Strudley, Celia J.; Wells, Kevin
2014-08-01
Planar 2D x-ray mammography is generally accepted as the preferred screening technique used for breast cancer detection. Recently, digital breast tomosynthesis (DBT) has been introduced to overcome some of the inherent limitations of conventional planar imaging, and future technological enhancements are expected to result in the introduction of further innovative modalities. However, it is crucial to understand the impact of any new imaging technology or methodology on cancer detection rates and patient recall. Any such assessment conventionally requires large scale clinical trials demanding significant investment in time and resources. The concept of virtual clinical trials and virtual performance assessment may offer a viable alternative to this approach. However, virtual approaches require a collection of specialized modelling tools which can be used to emulate the image acquisition process and simulate images of a quality indistinguishable from their real clinical counterparts. In this paper, we present two image simulation chains constructed using modelling tools that can be used for the evaluation of 2D-mammography and DBT systems. We validate both approaches by comparing simulated images with real images acquired using the system being simulated. A comparison of the contrast-to-noise ratios and image blurring for real and simulated images of test objects shows good agreement ( < 9% error). This suggests that our simulation approach is a promising alternative to conventional physical performance assessment followed by large scale clinical trials.
Study on the human perception of incipient and overall slippages using a 2D FE fingertip model.
Zhongkui Wang; Chathuranga, Damith Suresh; Hirai, Shinichi
2015-08-01
Slippage on the fingertips is an important phenomenon that occurs constantly in our daily life. However, the mechanism behind the slippage, especially incipient slippage, which appears prior to overall slippage, has not been fully understood. In this paper, a 2D finite element (FE) model of the human fingertip was presented to study how the human fingertip perceives slippages. The 2D geometries of the fingertip were generated based on magnetic resonance (MR) images. The fingertip model consisted of four layers: epidermis, dermis, subcutaneous tissue, and distal phalanx. The microstructures of the intermediate and limiting ridges in between the epidermis and dermis layers were manually constructed to locate four types of mechanoreceptors. Simulations of pushing and sliding motions were implemented, and mechanical measures of the acceleration and strain energy density (SED) were investigated at the locations of the mechanoreceptors. We found that both incipient and overall slippages could be clearly detected using the acceleration signal captured by the FA-I and SA-I receptors. The SED measurement does not provide useful information for the slippage detection. PMID:26737602
NASA Astrophysics Data System (ADS)
Ghazanfarian, J.; Abbassi, A.
2012-03-01
Analytical and numerical solutions of the 2D transient dual-phase-lag (DPL) heat conduction equation are presented in this article. The geometry is that of a simplified metal oxide semiconductor field effect transistor with a heater placed on it. A temperature jump boundary condition is used on all boundaries in order to consider boundary phonon scattering at the micro- and nanoscale. A combination of a Laplace transformation technique and separation of variables is used to solve governing equations analytically, and a three-level finite difference scheme is employed to generate numerical results. The results are illustrated for three Knudsen numbers of 0.1, 1, and 10 at different instants of time. It is seen that the wave characteristic of the DPL model is strengthened by increasing the Knudsen number. It is found that the combination of the DPL model with the proposed mixed-type temperature boundary condition has the potential to accurately predict a 2D temperature distribution not only within the transistor itself but also in the near-boundary region.
Polymorphism, crystal nucleation and growth in the phase-field crystal model in 2D and 3D.
Tóth, Gyula I; Tegze, György; Pusztai, Tamás; Tóth, Gergely; Gránásy, László
2010-09-15
We apply a simple dynamical density functional theory, the phase-field crystal (PFC) model of overdamped conservative dynamics, to address polymorphism, crystal nucleation, and crystal growth in the diffusion-controlled limit. We refine the phase diagram for 3D, and determine the line free energy in 2D and the height of the nucleation barrier in 2D and 3D for homogeneous and heterogeneous nucleation by solving the respective Euler-Lagrange (EL) equations. We demonstrate that, in the PFC model, the body-centered cubic (bcc), the face-centered cubic (fcc), and the hexagonal close-packed structures (hcp) compete, while the simple cubic structure is unstable, and that phase preference can be tuned by changing the model parameters: close to the critical point the bcc structure is stable, while far from the critical point the fcc prevails, with an hcp stability domain in between. We note that with increasing distance from the critical point the equilibrium shapes vary from the sphere to specific faceted shapes: rhombic dodecahedron (bcc), truncated octahedron (fcc), and hexagonal prism (hcp). Solving the equation of motion of the PFC model supplied with conserved noise, solidification starts with the nucleation of an amorphous precursor phase, into which the stable crystalline phase nucleates. The growth rate is found to be time dependent and anisotropic; this anisotropy depends on the driving force. We show that due to the diffusion-controlled growth mechanism, which is especially relevant for crystal aggregation in colloidal systems, dendritic growth structures evolve in large-scale isothermal single-component PFC simulations. An oscillatory effective pair potential resembling those for model glass formers has been evaluated from structural data of the amorphous phase obtained by instantaneous quenching. Finally, we present results for eutectic solidification in a binary PFC model. PMID:21386517
NASA Astrophysics Data System (ADS)
Hayden-Lesmeister, A.; Remo, J. W.; Piazza, B.
2015-12-01
The Atchafalaya River (AR) in Louisiana is the principal distributary of the Mississippi River (MR), and its basin contains the largest contiguous area of baldcypress-water tupelo swamp forests in North America. After designation of the Atchafalaya River Basin (ARB) as a federal floodway following the destructive 1927 MR flood, it was extensively modified to accommodate a substantial portion of the MR flow (~25%) to mitigate flooding in southern Louisiana. These modifications and increased flows resulted in substantial incision along large portions of the AR, altering connectivity between the river and its associated waterbodies. As a result of incision, the hydroperiod has been substantially altered, which has contributed to a decline in ecological health of the ARB's baldcypress-water tupelo forests. While it is recognized that the altered hydroperiod has negatively affected natural baldcypress regeneration, it is unclear whether proposed projects designed to enhance flow connectivity will increase long-term survival of these forests. In this study, we have constructed a 1D2D hydrodynamic model using SOBEK 2.12 to realistically model key physical parameters such as residence times, inundation extent, water-surface elevations (WSELs), and flow velocities to increase our understanding of the ARB's altered hydroperiod and the consequences for baldcypress-water tupelo forests. While the model encompasses a majority of the ARB, our modeling effort is focused on the Flat Lake Water Management Unit located in the southern portion of the ARB, where it will also be used to evaluate flow connectivity enhancement projects within the management unit. We believe our 1D2D hybrid hydraulic modeling approach will provide the flexibility and accuracy needed to guide connectivity enhancement efforts in the ARB and may provide a model framework for guiding similar efforts along other highly-altered river systems.
Polymorphism, crystal nucleation and growth in the phase-field crystal model in 2D and 3D
NASA Astrophysics Data System (ADS)
Tóth, Gyula I.; Tegze, György; Pusztai, Tamás; Tóth, Gergely; Gránásy, László
2010-09-01
We apply a simple dynamical density functional theory, the phase-field crystal (PFC) model of overdamped conservative dynamics, to address polymorphism, crystal nucleation, and crystal growth in the diffusion-controlled limit. We refine the phase diagram for 3D, and determine the line free energy in 2D and the height of the nucleation barrier in 2D and 3D for homogeneous and heterogeneous nucleation by solving the respective Euler-Lagrange (EL) equations. We demonstrate that, in the PFC model, the body-centered cubic (bcc), the face-centered cubic (fcc), and the hexagonal close-packed structures (hcp) compete, while the simple cubic structure is unstable, and that phase preference can be tuned by changing the model parameters: close to the critical point the bcc structure is stable, while far from the critical point the fcc prevails, with an hcp stability domain in between. We note that with increasing distance from the critical point the equilibrium shapes vary from the sphere to specific faceted shapes: rhombic dodecahedron (bcc), truncated octahedron (fcc), and hexagonal prism (hcp). Solving the equation of motion of the PFC model supplied with conserved noise, solidification starts with the nucleation of an amorphous precursor phase, into which the stable crystalline phase nucleates. The growth rate is found to be time dependent and anisotropic; this anisotropy depends on the driving force. We show that due to the diffusion-controlled growth mechanism, which is especially relevant for crystal aggregation in colloidal systems, dendritic growth structures evolve in large-scale isothermal single-component PFC simulations. An oscillatory effective pair potential resembling those for model glass formers has been evaluated from structural data of the amorphous phase obtained by instantaneous quenching. Finally, we present results for eutectic solidification in a binary PFC model.
A simplified 2D model for meander migration with physically-based bank evolution
NASA Astrophysics Data System (ADS)
Motta, Davide; Abad, Jorge D.; Langendoen, Eddy J.; Garcia, Marcelo H.
2012-08-01
The rate of migration, calculated by numerical models of river meandering, is commonly based on a method that relates the rate of migration to near-bank excess velocity multiplied by a dimensionless coefficient. Notwithstanding its simplicity, since the early 1980s this method has provided important insight into the long-term evolution of meander planforms through theoretical exercises. Its use in practice has not been as successful, because the complexity of the physical processes responsible for bank retreat, the heterogeneity in floodplain soils, and the presence of vegetation, make the calibration of the dimensionless coefficient rather challenging. This paper presents a new approach that calculates rates of meander migration using physically-based streambank erosion formulations. The University of Illinois RVR Meander model, which simulates meandering-river flow and bed morphodynamics, is integrated with algorithms for streambank erosion of the US Department of Agriculture channel evolution computer model CONCEPTS. The performance of the proposed approach is compared to that of the more simple classic method through the application to several test cases for idealized and natural planform geometry. The advantages and limitations of the approach are discussed, focusing on simulated planform pattern, the impact of soil spatial heterogeneity, the relative importance of the different processes controlling bank erosion (hydraulic erosion, cantilever, and planar failure), the requirements for obtaining stable migration patterns (centerline filtering and interpolation of bank physical properties), and the capability of predicting the planform evolution of natural rivers over engineering time scales (i.e., 50 to 100 years). The applications show that the improved physically-based method of bank retreat is required to capture the complex long-term migration patterns of natural channels, which cannot be merely predicted from hydrodynamics only.
Spontaneous supersymmetry breaking in the 2D N=1 Wess-Zumino model.
Steinhauer, Kyle; Wenger, Urs
2014-12-01
We study the phase diagram of the two-dimensional N=1 Wess-Zumino model on the lattice using Wilson fermions and the fermion loop formulation. We give a complete nonperturbative determination of the ground state structure in the continuum and infinite volume limit. We also present a determination of the particle spectrum in the supersymmetric phase, in the supersymmetry broken phase and across the supersymmetry breaking phase transition. In the supersymmetry broken phase, we observe the emergence of the Goldstino particle. PMID:25526112
An Asymptotic Analysis of a 2-D Model of Dynamically Active Compartments Coupled by Bulk Diffusion
NASA Astrophysics Data System (ADS)
Gou, J.; Ward, M. J.
2016-04-01
A class of coupled cell-bulk ODE-PDE models is formulated and analyzed in a two-dimensional domain, which is relevant to studying quorum-sensing behavior on thin substrates. In this model, spatially segregated dynamically active signaling cells of a common small radius ɛ ≪ 1 are coupled through a passive bulk diffusion field. For this coupled system, the method of matched asymptotic expansions is used to construct steady-state solutions and to formulate a spectral problem that characterizes the linear stability properties of the steady-state solutions, with the aim of predicting whether temporal oscillations can be triggered by the cell-bulk coupling. Phase diagrams in parameter space where such collective oscillations can occur, as obtained from our linear stability analysis, are illustrated for two specific choices of the intracellular kinetics. In the limit of very large bulk diffusion, it is shown that solutions to the ODE-PDE cell-bulk system can be approximated by a finite-dimensional dynamical system. This limiting system is studied both analytically, using a linear stability analysis and, globally, using numerical bifurcation software. For one illustrative example of the theory, it is shown that when the number of cells exceeds some critical number, i.e., when a quorum is attained, the passive bulk diffusion field can trigger oscillations through a Hopf bifurcation that would otherwise not occur without the coupling. Moreover, for two specific models for the intracellular dynamics, we show that there are rather wide regions in parameter space where these triggered oscillations are synchronous in nature. Unless the bulk diffusivity is asymptotically large, it is shown that a diffusion-sensing behavior is possible whereby more clustered spatial configurations of cells inside the domain lead to larger regions in parameter space where synchronous collective oscillations between the small cells can occur. Finally, the linear stability analysis for these cell
Numerical modeling of electromagnetic waves scattering from 2D coastal breaking sea waves
NASA Astrophysics Data System (ADS)
Khairi, Refzul; Coatanhay, Arnaud; Khenchaf, Ali; Scolan, Yves Marie
2013-11-01
The aim of this work is to model the interaction of L-band electromagnetic waves with coastal breaking sea waves. The breaking sea waves' profiles are generated using the desingularized technique and the electromagnetic waves scattering is computed using the high-order method of moments (HO-MoM) combined with non uniform rational basis spline (NURBS) geometry. Our study mainly focuses upon the electromagnetic waves behavior in the crest and the cavity of breaking sea waves. Contribution to the Topical Issue "Numelec 2012", Edited by Adel Razek.
An Asymptotic Analysis of a 2-D Model of Dynamically Active Compartments Coupled by Bulk Diffusion
NASA Astrophysics Data System (ADS)
Gou, J.; Ward, M. J.
2016-08-01
A class of coupled cell-bulk ODE-PDE models is formulated and analyzed in a two-dimensional domain, which is relevant to studying quorum-sensing behavior on thin substrates. In this model, spatially segregated dynamically active signaling cells of a common small radius ɛ ≪ 1 are coupled through a passive bulk diffusion field. For this coupled system, the method of matched asymptotic expansions is used to construct steady-state solutions and to formulate a spectral problem that characterizes the linear stability properties of the steady-state solutions, with the aim of predicting whether temporal oscillations can be triggered by the cell-bulk coupling. Phase diagrams in parameter space where such collective oscillations can occur, as obtained from our linear stability analysis, are illustrated for two specific choices of the intracellular kinetics. In the limit of very large bulk diffusion, it is shown that solutions to the ODE-PDE cell-bulk system can be approximated by a finite-dimensional dynamical system. This limiting system is studied both analytically, using a linear stability analysis and, globally, using numerical bifurcation software. For one illustrative example of the theory, it is shown that when the number of cells exceeds some critical number, i.e., when a quorum is attained, the passive bulk diffusion field can trigger oscillations through a Hopf bifurcation that would otherwise not occur without the coupling. Moreover, for two specific models for the intracellular dynamics, we show that there are rather wide regions in parameter space where these triggered oscillations are synchronous in nature. Unless the bulk diffusivity is asymptotically large, it is shown that a diffusion-sensing behavior is possible whereby more clustered spatial configurations of cells inside the domain lead to larger regions in parameter space where synchronous collective oscillations between the small cells can occur. Finally, the linear stability analysis for these cell
Dynamics of quiescent prominence fine structures analyzed by 2D non-LTE modelling of the Hα line
NASA Astrophysics Data System (ADS)
Gunár, S.; Mein, P.; Schmieder, B.; Heinzel, P.; Mein, N.
2012-07-01
Aims: We analyze the dynamics of the prominence fine structures of a quiescent prominence observed on April 26, 2007 during a coordinated campaign of several spaceborne and ground-based instruments. We use Lyman spectra observed by SOHO/SUMER and the Hα line spectra obtained by MSDP spectrograph working at the Meudon Solar Tower. Methods: We employ the 2D multi-thread prominence fine-structure modelling that includes randomly distributed line-of-sight (LOS) velocities of individual threads to derive models producing synthetic Lyman lines in good agreement with the SOHO/SUMER observations. We then use these models to produce synthetic Hα line spectra that we compare with the observed spectra using three statistical parameters: the line integrated intensity, the line full-width at half-maximum (FWHM), and the Doppler velocity derived from shifts of the line profiles. Results: We demonstrate that the 2D multi-thread models that produce synthetic Lyman spectra in agreement with observations also generate synthetic Hα spectra in good agreement with the observed ones. The statistical analysis of the FWHM and Doppler velocities of the synthetic Hα line profiles show that the overall LOS velocities in the April 26, 2007 prominence at the time of the observations were below 15 km s-1 and in the prominence core were close to 10 km s-1. In combination with the analysis of the Lyman spectra, we determine several physical parameters of the observed prominence fine-structures that show that the April 26, 2007 prominence had a relatively low-mass weakly magnetized structure. We are also able to impose some constraints on the prominence core temperature, which may be relatively low, with values below 6000 K. Conclusions: The combination of 2D non-LTE prominence fine-structure modelling with the statistical analysis of the observed and synthetic Lyman and Hα spectra allows us to analyze the influence of the model input parameters and the velocity fields on the synthetic H
Competition Among Reputations in the 2D Sznajd Model: Spontaneous Emergence of Democratic States
NASA Astrophysics Data System (ADS)
Crokidakis, Nuno; Forgerini, Fabricio L.
2012-04-01
We propose a modification in the Sznajd sociophysics model defined on the square lattice. For this purpose, we consider reputation—a mechanism limiting the agents' persuasive power. The reputation is introduced as a time-dependent score, which can be positive or negative. This mechanism avoids dictatorship (full consensus, all spins parallel) for a wide range of model parameters. We consider two different situations: case 1, in which the agents' reputation increases for each persuaded neighbor, and case 2, in which the agents' reputation increases for each persuasion and decreases when a neighbor keeps his opinion. Our results show that the introduction of reputation avoids full consensus even for initial densities of up spins greater than 1/2. The relaxation times follow a log-normal-like distribution in both cases, but they are larger in case 2 due to the competition among reputations. In addition, we show that the usual phase transition occurs and depends on the initial concentration d of individuals with the same opinion, but the critical points d c in the two cases are different.
Modeling Selective Local Interactions with Memory: Motion on a 2D Lattice.
Weinberg, Daniel; Levy, Doron
2014-06-15
We consider a system of particles that simultaneously move on a two-dimensional periodic lattice at discrete times steps. Particles remember their last direction of movement and may either choose to continue moving in this direction, remain stationary, or move toward one of their neighbors. The form of motion is chosen based on predetermined stationary probabilities. Simulations of this model reveal a connection between these probabilities and the emerging patterns and size of aggregates. In addition, we develop a reaction diffusion master equation from which we derive a system of ODEs describing the dynamics of the particles on the lattice. Simulations demonstrate that solutions of the ODEs may replicate the aggregation patterns produced by the stochastic particle model. We investigate conditions on the parameters that influence the locations at which particles prefer to aggregate. This work is a two-dimensional generalization of [Galante & Levy, Physica D, http://dx.doi.org/10.1016/j.physd.2012.10.010], in which the corresponding one-dimensional problem was studied. PMID:25045193
Manifest: A computer program for 2-D flow modeling in Stirling machines
NASA Technical Reports Server (NTRS)
Gedeon, David
1989-01-01
A computer program named Manifest is discussed. Manifest is a program one might want to use to model the fluid dynamics in the manifolds commonly found between the heat exchangers and regenerators of Stirling machines; but not just in the manifolds - in the regenerators as well. And in all sorts of other places too, such as: in heaters or coolers, or perhaps even in cylinder spaces. There are probably nonStirling uses for Manifest also. In broad strokes, Manifest will: (1) model oscillating internal compressible laminar fluid flow in a wide range of two-dimensional regions, either filled with porous materials or empty; (2) present a graphics-based user-friendly interface, allowing easy selection and modification of region shape and boundary condition specification; (3) run on a personal computer, or optionally (in the case of its number-crunching module) on a supercomputer; and (4) allow interactive examination of the solution output so the user can view vector plots of flow velocity, contour plots of pressure and temperature at various locations and tabulate energy-related integrals of interest.
Subsurface Gas Flow and Ice Grain Acceleration within Enceladus and Europa Fissures: 2D DSMC Models
NASA Astrophysics Data System (ADS)
Tucker, O. J.; Combi, M. R.; Tenishev, V.
2014-12-01
The ejection of material from geysers is a ubiquitous occurrence on outer solar system bodies. Water vapor plumes have been observed emanating from the southern hemispheres of Enceladus and Europa (Hansen et al. 2011, Roth et al. 2014), and N2plumes carrying ice and ark particles on Triton (Soderblom et al. 2009). The gas and ice grain distributions in the Enceladus plume depend on the subsurface gas properties and the geometry of the fissures e.g., (Schmidt et al. 2008, Ingersoll et al. 2010). Of course the fissures can have complex geometries due to tidal stresses, melting, freezing etc., but directly sampled and inferred gas and grain properties for the plume (source rate, bulk velocity, terminal grain velocity) can be used to provide a basis to constrain characteristic dimensions of vent width and depth. We used a 2-dimensional Direct Simulation Monte Carlo (DSMC) technique to model venting from both axi-symmetric canyons with widths ~2 km and narrow jets with widths ~15-40 m. For all of our vent geometries, considered the water vapor source rates (1027 - 1028 s-1) and bulk gas velocities (~330 - 670 m/s) obtained at the surface were consistent with inferred values obtained by fits of the data for the plume densities (1026 - 1028 s-1, 250 - 1000 m/s) respectively. However, when using the resulting DSMC gas distribution for the canyon geometries to integrate the trajectories of ice grains we found it insufficient to accelerate submicron ice grains to Enceladus' escape speed. On the other hand, the gas distributions in the jet like vents accelerated grains > 10 μm significantly above Enceladus' escape speed. It has been suggested that micron-sized grains are ejected from the vents with speeds comparable to the Enceladus escape speed. Here we report on these results including comparisons to results obtained from 1D models as well as discuss the implications of our plume model results. We also show preliminary results for similar considerations applied to Europa
Directional 2D functions as models for fast layout pattern transfer verification
NASA Astrophysics Data System (ADS)
Torres, J. Andres; Hofmann, Mark; Otto, Oberdan
2009-03-01
results are analyzed from the point of view of runtime and matching with respect to a complete verification process that uses full mask data preparation followed by production-quality contour simulations under a variety of process variations, including perturbations to focus, mask bias and exposure. One of the main concerns with using an empirical model is its ability to predict topologies that were not part of the original calibration. While there is indeed a dependency on the model in regard to the data used for calibration, the results indicate that this dependency is weak and that such models are able to provide sufficient accuracy with much more tolerable computation times.
Comparative 2D BRT and seismic modeling of CO2 plumes in deep saline reservoirs
NASA Astrophysics Data System (ADS)
Hagrey, Said Attia Al; Strahser, Matthias; Rabbel, Wolfgang
2010-05-01
The multi-disciplinary research project 'CO2 MoPa' (modeling and parameterization of CO2 storage in deep saline formations for dimensions and risk analysis) deals, among others, with the parameterization of virtual subsurface storage sites to characterize rock properties with modeling of processes related to CCS in deep saline reservoirs. The geophysical task is to estimate the sensitivity and the resolution of reflection seismic and geoelectrical time-lapses in order to determine the propagation of CO2 within the sediments and the development of the CO2 reservoir. Compared with seismic, borehole electric resistivity tomography (BRT) has lower resolution, but its permanent installation and continuous monitoring can make it an economical alternative or complement. Seismic and geoelectric applications to quantify changes of intrinsic aquifer properties with time are justified by the lower density and velocity and the higher electric resistivity of CO2 in comparison to pore brine. We present here modeling results on scenarios with realistic parameters of deep saline formations of the German Basin (candidate for CCS). The study focuses on effects of parameters related to depth (temperature, pressure), petrophysics (salinity, porosity), plume dimensions/saturations and data acquisition, processing and inversions. Both methods show stronger effects with increasing brine salinity, CO2 reservoir thickness, porosity and CO2 saturation in the pores. Both methods have a pronounced depth dependence due to the pressure and temperature dependence of the velocities, densities and resistivities of the host rock, brine and CO2. Increasing depth means also decreasing frequencies of the seismic signal and hence weaker resolution. Because of the expected limited thickness of the CO2 reservoir, the reflections from its top and bottom will most likely interfere with each other, making it difficult to determine the exact dimensions of the reservoir. In BRT, the resulting resistivity
Reverse modeling of 2D and 3D diapiric salt structures
NASA Astrophysics Data System (ADS)
Fernandez, N.; Kaus, B.
2013-12-01
Mechanical forward modeling of salt diapirs formed by two different processes (differential loading and buoyancy driven) has been widely performed with numerical codes in many studies, whereas works focusing on the dynamic retro-deformation of such structures remain scarce. Buoyancy driven diapirs, in which the density difference between salt and overburden induces upward motion of salt, have been successfully retro-deformed in two and three dimensions using simple rheologies for the salt and overburden (e.g., Kaus & Podladchikov 2001). However, retro-deformation of down-building diapirs (syndepositional process in which salt structures grow while sediments are being deposited) using mechanical codes has only been done in two dimensions (e.g., Ismael-Zadeh et al. 2001), even though the importance of three-dimensionality in salt diapirism is accepted. We have used the two-dimensional visco-elasto-plastic finite element code MILAMIN_VEP to perform both forward and backward simulations and to check the validity of a reversed time step method (Kaus & Podladchikov 2001 and Ismael-Zadeh et al. 2001) for a wide range of parameters, variable sedimentation rates, and for non-linear rheologies. Forward simulations are run until the salt layer is exhausted and then a reverse time step is applied in order to retro-deform the model. Down-building process was mimicked using a fast-erosion condition at the surface, which keeps it flat and redistributes material at every time step. Initially, we have tested our method by retro-deforming salt structures that develop from an interface that is sinusoidally perturbed. More realistic simulations were performed by starting with randomly perturbed salt interface and using different rheological parameters for the salt and the overburden as well as variable sedimentation rates. Once the method has been proved successful for different parameters in two dimensions, the finite differences parallel code LaMEM has also been used to dynamically
Form factor expansions in the 2D Ising model and Painlevé VI
NASA Astrophysics Data System (ADS)
Mangazeev, Vladimir V.; Guttmann, Anthony J.
2010-10-01
We derive a Toda-type recurrence relation, in both high- and low-temperature regimes, for the λ-extended diagonal correlation functions C(N,N;λ) of the two-dimensional Ising model, using an earlier connection between diagonal form factor expansions and tau-functions within Painlevé VI (PVI) theory, originally discovered by Jimbo and Miwa. This greatly simplifies the calculation of the diagonal correlation functions, particularly their λ-extended counterparts. We also conjecture a closed form expression for the simplest off-diagonal case C(0,1;λ) where a connection to PVI theory is not known. Combined with the results for diagonal correlations these give all the initial conditions required for the λ-extended version of quadratic difference equations for the correlation functions discovered by McCoy, Perk and Wu. The results obtained here should provide a further potential algorithmic improvement in the λ-extended case, and facilitate other developments.
The hypergeometric series for the partition function of the 2D Ising model
NASA Astrophysics Data System (ADS)
Viswanathan, G. M.
2015-07-01
In 1944 Onsager published the formula for the partition function of the Ising model for the infinite square lattice. He was able to express the internal energy in terms of a special function, but he left the free energy as a definite integral. Seven decades later, the partition function and free energy have yet to be written in closed form, even with the aid of special functions. Here we evaluate the definite integral explicitly, using hypergeometric series. Let β denote the reciprocal temperature, J the coupling and f the free energy per spin. We prove that - β f = \\ln(2 \\cosh 2K) - κ2 ~ {_4F_3} \\big[~ 1,~1,~3/2,~3/2 ~~~2,~2,~2 ;16 κ2 ~\\big] ~ , where pFq is the generalized hypergeometric function, K = βJ, and 2κ = tanh 2K sech 2K.
Numerical Real Space Renormalization of a 2D Random Boson Model
NASA Astrophysics Data System (ADS)
Iyer, Shankar; Refael, Gil
2011-03-01
Interest in the random boson problem originated in experiments on Helium adsorbed in Vycor, but the problem arises in many contexts, including Josephson junction arrays and disordered cold atom systems. Recently, Altman, Kafri, Polkovnikov, and Refael have studied a rotor model description of interacting bosons subjected to quenched disorder in one dimension. Using a real space renormalization approach, they have identified a random fixed point that marks the transition between superfluid and Mott-glass phases. Here, we describe work that numerically extends their approach to the random boson problem in two dimensions. We first test the validity of the real space renormalization by comparison to exact diagonalization of small systems. Then, we move to larger systems and explore what the renormalization scheme can tell us about the nature of the insulating and superfluid phases.
2D analytical modeling of a wholly superconducting synchronous reluctance motor
NASA Astrophysics Data System (ADS)
Malé, G.; Lubin, T.; Mezani, S.; Lévêque, J.
2011-03-01
An analytical computation of the magnetic field distribution in a wholly superconducting synchronous reluctance motor is proposed. The stator of the studied motor consists of three-phase HTS armature windings fed by AC currents. The rotor is made with HTS bulks which have a nearly diamagnetic behavior under zero field cooling. The electromagnetic torque is obtained by the interaction between the rotating magnetic field created by the HTS windings and the HTS bulks. The proposed analytical model is based on the resolution of Laplace's and Poisson's equations (by the separation-of-variables technique) for each sub-domain, i.e. stator windings, air-gap, holes between HTS bulks and exterior iron shield. For the study, the HTS bulks are considered as perfect diamagnetic materials. The boundary and continuity conditions between the sub-domains yield to the global solution. Magnetic field distributions and electromagnetic torque obtained by the analytical method are compared with those obtained from finite element analyses.
Almost Gibbsianness and Parsimonious Description of the Decimated 2d-Ising Model
NASA Astrophysics Data System (ADS)
Le Ny, Arnaud
2013-07-01
In this paper, we complete and provide details for the existing characterizations of the decimation of the Ising model on {Z}2 in the generalized Gibbs context. We first recall a few features of the Dobrushin program of restoration of Gibbsianness and present the construction of global specifications consistent with the extremal decimated measures. We use them to prove that these renormalized measures are almost Gibbsian at any temperature and to analyse in detail its convex set of DLR measures. We also recall the weakly Gibbsian description and complete it using a potential that admits a quenched correlation decay, i.e. a well-defined configuration-dependent length beyond which this potential decays exponentially. We use these results to incorporate these decimated measures in the new framework of parsimonious random fields that has been recently developed to investigate probability aspects related to neurosciences.
A mathematical model for a didactic device able to simulate a 2D Newtonian gravitational field
NASA Astrophysics Data System (ADS)
De Marchi, Fabrizio
2015-01-01
In this paper we propose a mathematical model to describe a theoretical device able to simulate an inverse-square force on a test mass moving on a horizontal plane. We use two pulleys, a counterweight, a wire and a smooth rail, in addition to the test mass. The tension of the wire (i.e. the attractive force on the test mass) is determined by the position of a counterweight free to move on a rail placed under the plane. The profile of the rail is calculated in order to obtain the required Newtonian force. Details of this calculation are reported in the paper, and numerical simulations are provided in order to investigate the stability of the orbits under the effect of the main friction forces and other perturbative effects. This work points out that there are some criticalities intrinsic to the apparatus and gives some suggestions about how to minimize their impact.
Finite-size effects for anisotropic 2D Ising model with various boundary conditions
NASA Astrophysics Data System (ADS)
Izmailian, N. Sh
2012-12-01
We analyze the exact partition function of the anisotropic Ising model on finite M × N rectangular lattices under four different boundary conditions (periodic-periodic (pp), periodic-antiperiodic (pa), antiperiodic-periodic (ap) and antiperiodic-antiperiodic (aa)) obtained by Kaufman (1949 Phys. Rev. 76 1232), Wu and Hu (2002 J. Phys. A: Math. Gen. 35 5189) and Kastening (2002 Phys. Rev. E 66 057103)). We express the partition functions in terms of the partition functions Zα, β(J, k) with (α, β) = (0, 0), (1/2, 0), (0, 1/2) and (1/2, 1/2), J is an interaction coupling and k is an anisotropy parameter. Based on such expressions, we then extend the algorithm of Ivashkevich et al (2002 J. Phys. A: Math. Gen. 35 5543) to derive the exact asymptotic expansion of the logarithm of the partition function for all boundary conditions mentioned above. Our result is f = fbulk + ∑∞p = 0fp(ρ, k)S-p - 1, where f is the free energy of the system, fbulk is the free energy of the bulk, S = MN is the area of the lattice and ρ = M/N is the aspect ratio. All coefficients in this expansion are expressed through analytical functions. We have introduced the effective aspect ratio ρeff = ρ/sinh 2Jc and show that for pp and aa boundary conditions all finite size correction terms are invariant under the transformation ρeff → 1/ρeff. This article is part of ‘Lattice models and integrability’, a special issue of Journal of Physics A: Mathematical and Theoretical in honour of F Y Wu's 80th birthday.
Improving 2D and 3D Skin In Vitro Models Using Macromolecular Crowding.
Benny, Paula; Badowski, Cedric; Lane, E Birgitte; Raghunath, Michael
2016-01-01
The glycoprotein family of collagens represents the main structural proteins in the human body, and are key components of biomaterials used in modern tissue engineering. A technical bottleneck is the deposition of collagen in vitro, as it is notoriously slow, resulting in sub-optimal formation of connective tissue and subsequent tissue cohesion, particularly in skin models. Here, we describe a method which involves the addition of differentially-sized sucrose co-polymers to skin cultures to generate macromolecular crowding (MMC), which results in a dramatic enhancement of collagen deposition. Particularly, dermal fibroblasts deposited a significant amount of collagen I/IV/VII and fibronectin under MMC in comparison to controls. The protocol also describes a method to decellularize crowded cell layers, exposing significant amounts of extracellular matrix (ECM) which were retained on the culture surface as evidenced by immunocytochemistry. Total matrix mass and distribution pattern was studied using interference reflection microscopy. Interestingly, fibroblasts, keratinocytes and co-cultures produced cell-derived matrices (CDM) of varying composition and morphology. CDM could be used as "bio-scaffolds" for secondary cell seeding, where the current use of coatings or scaffolds, typically from xenogenic animal sources, can be avoided, thus moving towards more clinically relevant applications. In addition, this protocol describes the application of MMC during the submerged phase of a 3D-organotypic skin co-culture model which was sufficient to enhance ECM deposition in the dermo-epidermal junction (DEJ), in particular, collagen VII, the major component of anchoring fibrils. Electron microscopy confirmed the presence of anchoring fibrils in cultures developed with MMC, as compared to controls. This is significant as anchoring fibrils tether the dermis to the epidermis, hence, having a pre-formed mature DEJ may benefit skin graft recipients in terms of graft stability and
2D and 3D separate and joint inversion of airborne ZTEM and ground AMT data: Synthetic model studies
NASA Astrophysics Data System (ADS)
Sasaki, Yutaka; Yi, Myeong-Jong; Choi, Jihyang
2014-05-01
The ZTEM (Z-axis Tipper Electromagnetic) method measures naturally occurring audio-frequency magnetic fields and obtains the tipper function that defines the relationship among the three components of the magnetic field. Since the anomalous tipper responses are caused by the presence of lateral resistivity variations, the ZTEM survey is most suited for detecting and delineating conductive bodies extending to considerable depths, such as graphitic dykes encountered in the exploration of unconformity type uranium deposit. Our simulations shows that inversion of ZTEM data can detect reasonably well multiple conductive dykes placed 1 km apart. One important issue regarding ZTEM inversion is the effect of the initial model, because homogeneous half-space and (1D) layered structures produce no responses. For the 2D model with multiple conductive dykes, the inversion results were useful for locating the dykes even when the initial model was not close to the true background resistivity. For general 3D structures, however, the resolution of the conductive bodies can be reduced considerably depending on the initial model. This is because the tipper magnitudes from 3D conductors are smaller due to boundary charges than the 2D responses. To alleviate this disadvantage of ZTEM surveys, we combined ZTEM and audio-frequency magnetotelluric (AMT) data. Inversion of sparse AMT data was shown to be effective in providing a good initial model for ZTEM inversion. Moreover, simultaneously inverting both data sets led to better results than the sequential approach by enabling to identify structural features that were difficult to resolve from the individual data sets.
NASA Astrophysics Data System (ADS)
Hagedorn, B.; El-Kadi, A. I.
2009-12-01
The FLO-2D flood routing model with topography derived from 10 m DEMs was used to estimate runoff and suspended sediment fluxes of the Hanalei and Kawela catchments located on the Hawaiian islands of Kauai and Molokai, respectively. These catchments differ in average annual rainfall (~17.0 mm/day in the Hanalei vs. ~3.81 mm/day in the Kawela), discharge (~540 x 106 L/day in the Hanalei vs. 7.80 x 106 L/day in the Kawela), suspended sediment content (~13.3 mg/L in the Hanalei vs. ~39.8 mg/L in the Kawela) and vegetation cover (evergreen forests in the Hanalei vs. grassland in the Kawela). However, they are similar in catchment area (~80 km2), bedrock lithology (basalt and marine carbonates) and relief (3-70% slopes normal to river channel). Models were calibrated and validated using 4 years (2005-2008) of daily observed discharge and suspended sediment content data. Alternative scenarios of spatial distribution of rainfall, evaporation, infiltration and surface roughness were evaluated. Once surface flow begins, slope becomes the principal parameter controlling flow direction in both catchments and velocity and a convex topography promote a rapid spreading of the flow towards the estuaries, especially considering the smoothing effect on surface roughness of the gently dipping lowlands. Monthly runoff fluxes predicted by FLO-2D compared well with the measured data in the Hanalei; however, a significant difference between the actual and simulated runoff was observed in the Kawela River in the dry season. Predicted and observed monthly sediment yield correlated reasonably well in both catchments; however for the events of small rainfall magnitude, the model generally overestimated sediment yield, while the opposite was true for larger rainfall events. Our modeling results showed that sediment loading is strongly influenced by infiltration which, in turn, is controlled by the soil, land use and vegetation properties of the catchments. Lower proportions of riparian
NASA Astrophysics Data System (ADS)
Pestana, Rita; Matias, Magda; Canelas, Ricardo; Roque, Dora; Araujo, Amelia; Van Zeller, Emilia; Trigo-Teixeira, Antonio; Ferreira, Rui; Oliveira, Rodrigo; Heleno, Sandra; Falcão, Ana Paula; Gonçalves, Alexandre B.
2014-05-01
Floods account for 40% of all natural hazards worldwide and were responsible for the loss of about 100 thousand human lives and affected more than 1,4 million people in the last decade of the 20th century alone. Floods have been the deadliest natural hazard in Portugal in the last 100 years. In terms of inundated area, the largest floods in Portugal occur in the Lower Tagus (LT) River. On average, the river overflows every 2.5 years, at times blocking roads and causing important agricultural damages. The economical relevance of the area and the high frequency of the relevant flood events make the LT floodplain a good pilot region to conduct a data-driven, systematic calibration work of flood hydraulic models. This paper focus on the calibration of 2D-horizontal flood simulation models for the floods of 1997, 2001 and 2006 on a 70-km stretch of the LT River, between Tramagal and Omnias, using the software Tuflow. This computational engine provides 2D solutions based on the Stelling finite-difference, alternating direction implicit (ADI) scheme that solves the full 2D free surface shallow-water flow equations and allowed the introduction of structures that constrain water flow. The models were based on a digital terrain model (DTM) acquired in 2008 by radar techniques (5m of spatial resolution) and on in situ measurements of water elevation in Omnias (downstream boundary condition) and discharge in Tramagal and Zezere (upstream boundary conditions). Due to the relevancy of several dykes on this stretch of the LT River, non-existent on the available DTM, five of them were introduced in the models. All models have the same boundaries and were simulated using steady-state flow initial conditions. The resolution of the 2D grid mesh was 30m. Land cover data for the study area was retrieved from Corine Land Cover 2006 (CO-ordination of INformation on the Environment) with spatial resolution of 100m, and combined with estimated manning coefficients obtained in literature
Beyond classical nucleation theory: A 2-D lattice-gas automata model
NASA Astrophysics Data System (ADS)
Hickey, Joseph
Nucleation is the first step in the formation of a new phase in a thermodynamic system. The Classical Nucleation Theory (CNT) is the traditional theory used to describe this phenomenon. The object of this thesis is to investigate nucleation beyond one of the most significant limitations of the CNT: the assumption that the surface tension of a nucleating cluster of the new phase is independent of the cluster's size and has the same value that it would have in the bulk of the new phase. In order to accomplish this, we consider a microscopic, two-dimensional Lattice Gas Automata (LGA) model of precipitate nucleation in a supersaturated system, with model input parameters Ess (solid particle-to-solid particle bonding energy), Esw (solid particle-to-water particle bonding energy), eta (next-to-nearest neighbour bonding coeffiicent in solid phase), and Cin (initial solute concentration). The LGA method was chosen for its advantages of easy implementation, low memory requirements, and fast computation speed. Analytical results for the system's concentration and the crystal radius as functions of time are derived and the former is fit to the simulation data in order to determine the system's equilibrium concentration. A mean first-passage time (MFPT) technique is used to obtain the nucleation rate and critical nucleus size from the simulation data. The nucleation rate and supersaturation are evaluated using a modification to the CNT that incorporates a two-dimensional, radius-dependent surface tension term. The Tolman parameter, delta, which controls the radius-dependence of the surface tension, decreases (increases) as a function of the magnitude of Ess (Esw), at fixed values of eta and Esw (Ess). On the other hand, delta increases as eta increases while E ss and Esw are held constant. The constant surface tension term of the CNT, Sigma0, increases (decreases) with increasing magnitudes of Ess (Esw) fixed values of Esw (Ess), and increases as eta is increased. Together
Constrained Path Monte Carlo and Its Application to the 2-D Hubbard Model
NASA Astrophysics Data System (ADS)
Zhang, Shiwei
1996-03-01
A recently proposed^1 quantum Monte Carlo (MC) simulation algorithm will be described for studying the ground-state (T=0K) properties of many-fermion systems. The method relies on the usual Hubbard-Stratonovich transformation. It consists of branching random walks in an over-complete basis space of Slater determinants. Asymptotically, the random walks produce determinants |φ_i> non-orthogonal to each other that collectively represent the ground-state wave function in an MC sense: |Ψ_0>=sumi |φ_i>. This reformulation combines important advantages of existing ground-state MC methods and provides an algorithm closely linked to traditional quantum chemistry approaches. In cases free of the fermion MC ``sign'' problem (e.g., half-filled or negative U Hubbard model), the formulation is exact, as is the standard projector MC^2. In cases with the sign problem, we constrain^3 each |φ_i> in the random walk to maintain a positive overlap with a trial wave function |ψ_T>. This constraint eliminates the exponential scaling of CPU time with system size. The computed ground-state energy is an upper bound. The method becomes exact if |ψ_T> is exact. Test results on the two-dimensional Hubbard model show that, even with a simple |ψ_T> such as a free-electron or an unrestricted Hartree-Fock wave function, the method yields very accurate energy and correlation function values when compared with available data from exact diagonalization and quantum MC. Results will be presented on correlation functions (e.g., pair-field) for up to 16× 16 lattices, at various electron fillings and interaction strengths. Work supported in part by the Department of Energy's High Performance Computing and Communication Program at Los Alamos National Laboratory, and at OSU by DOE-Basic Energy Sciences, Division of Materials Sciences. ^1 Shiwei Zhang, J. Carlson, and J. E. Gubernatis, Phys. Rev. Lett. 74, 3652 (1995). ^2 R. Blankenbecler, D. J. Scalapino, and R. L. Sugar, Phys. Rev. D 24, 2278 (1981
2D models of gas flow and ice grain acceleration in Enceladus' vents using DSMC methods
NASA Astrophysics Data System (ADS)
Tucker, Orenthal J.; Combi, Michael R.; Tenishev, Valeriy M.
2015-09-01
The gas distribution of the Enceladus water vapor plume and the terminal speeds of ejected ice grains are physically linked to its subsurface fissures and vents. It is estimated that the gas exits the fissures with speeds of ∼300-1000 m/s, while the micron-sized grains are ejected with speeds comparable to the escape speed (Schmidt, J. et al. [2008]. Nature 451, 685-688). We investigated the effects of isolated axisymmetric vent geometries on subsurface gas distributions, and in turn, the effects of gas drag on grain acceleration. Subsurface gas flows were modeled using a collision-limiter Direct Simulation Monte Carlo (DSMC) technique in order to consider a broad range of flow regimes (Bird, G. [1994]. Molecular Gas Dynamics and the Direct Simulation of Gas Flows. Oxford University Press, Oxford; Titov, E.V. et al. [2008]. J. Propul. Power 24(2), 311-321). The resulting DSMC gas distributions were used to determine the drag force for the integration of ice grain trajectories in a test particle model. Simulations were performed for diffuse flows in wide channels (Reynolds number ∼10-250) and dense flows in narrow tubular channels (Reynolds number ∼106). We compared gas properties like bulk speed and temperature, and the terminal grain speeds obtained at the vent exit with inferred values for the plume from Cassini data. In the simulations of wide fissures with dimensions similar to that of the Tiger Stripes the resulting subsurface gas densities of ∼1014-1020 m-3 were not sufficient to accelerate even micron-sized ice grains to the Enceladus escape speed. In the simulations of narrow tubular vents with radii of ∼10 m, the much denser flows with number densities of 1021-1023 m-3 accelerated micron-sized grains to bulk gas speed of ∼600 m/s. Further investigations are required to understand the complex relationship between the vent geometry, gas source rate and the sizes and speeds of ejected grains.
Hubbard Model study of Off Diagonally Confined fermions in a 2D Optical Lattice
NASA Astrophysics Data System (ADS)
Cone, Dave; Chiesa, Simone; Scalettar, Richard; Batrouni, George
2010-03-01
We report Quantum Monte Carlo simulations of a Hubbard Hamiltonian which incorporates a proposed new method for confining atoms in an optical lattice employing an inhomogeneous array of hopping matrix elements which trap atoms by going to zero at the lattice edges. This has been termed ``Off Diagonal Confinement (ODC)'' [1] to distinguish it from the more conventional use of a parabolic trap coupling to (diagonal) density operators. It has the advantage of producing systems which, while still being inhomogeneous, are entirely in the Mott phase, and allow simulations which are free of the sign problem at low temperatures. We analyze the effects of using ODC traps on the local density, density fluctuation, spin, and pairing correlation functions. Finally, we will discuss the advantages and importance of this new confinement technique for modeling correlated systems. Research supported by the Department of Energy, Office of Science SCIDAC program, DOE-DE-FC0206ER25793. [1] V.G. Rousseau et al., arXiv:0909.3543
Time-Dependent 2D Modeling of Magnetron Plasma Torch in Turbulent Flow
NASA Astrophysics Data System (ADS)
Li, Lincun; Xia, Weidong
2008-06-01
A theoretical model is presented to describe the electromagnetic, heat transfer and fluid flow phenomena within a magnetron plasma torch and in the resultant plume, by using a commercial computational fluid dynamics (CFD) code FLUENT. Specific calculations are presented for a pure argon system (i.e., an argon plasma discharging into an argon environment), operated in a turbulent mode. An important finding of this work is that the external axial magnetic field (AMF) may have a significant effect on the behavior of arc plasma and thus affects the resulting plume. The AMF impels the plasma to retract axially and expand radially. As a result, the plasma intensity distribution on the cross section of torch seems to be more uniform. Numerical results also show that with AMF, the highest plasma temperature decreases and the anode arc root moves upstream significantly, while the current density distribution at the anode is more concentrated with a higher peak value. In addition, the use of AMF then induces a strong backflow at the torch spout and its magnitude increases with the AMF strength but decreases with the inlet gas velocity.
Structural Disorder of Folded Proteins: Isotope-Edited 2D IR Spectroscopy and Markov State Modeling
Baiz, Carlos R.; Tokmakoff, Andrei
2015-01-01
The conformational heterogeneity of the N-terminal domain of the ribosomal protein L9 (NTL91-39) in its folded state is investigated using isotope-edited two-dimensional infrared spectroscopy. Backbone carbonyls are isotope-labeled (13C=18O) at five selected positions (V3, V9, V9G13, G16, and G24) to provide a set of localized spectroscopic probes of the structure and solvent exposure at these positions. Structural interpretation of the amide I line shapes is enabled by spectral simulations carried out on structures extracted from a recent Markov state model. The V3 label spectrum indicates that the β-sheet contacts between strands I and II are well folded with minimal disorder. The V9 and V9G13 label spectra, which directly probe the hydrogen-bond contacts across the β-turn, show significant disorder, indicating that molecular dynamics simulations tend to overstabilize ideally folded β-turn structures in NTL91-39. In addition, G24-label spectra provide evidence for a partially disordered α-helix backbone that participates in hydrogen bonding with the surrounding water. PMID:25863066
ADDENDUM: Addendum to `On the singularity structure of the 2D Ising model susceptibility'
NASA Astrophysics Data System (ADS)
Nickel, Bernie
2000-03-01
A remarkable product formula first derived by Palmer and Tracy (1981 Adv. Appl. Math. 2 329) for the integrand of the two-dimensional Ising model susceptibility expansion coefficients icons/Journals/Common/chi" ALT="chi" ALIGN="TOP"/> (2n ) for temperatures T less than the critical T c is shown to apply equally for icons/Journals/Common/chi" ALT="chi" ALIGN="TOP"/> (2n +1) for T >T c and agrees with formulae derived by Yamada (1984 Prog. Theor. Phys. 71 1416). This new representation simplifies the derivation of the results in the original paper of this title (1999 J. Phys. A: Math. Gen. 32 3889) to the extent that the leading series behaviour and the singularity structure can be deduced almost by inspection. The derivation of series is also simplified and I show, using extended series and knowledge of the singularity structure, that there is now unambiguous evidence for correction to scaling terms in the susceptibility beyond those inferred from a nonlinear scaling field analysis.
NASA Astrophysics Data System (ADS)
Liu, Shuang; Hu, Xiangyun; Xi, Yufei; Liu, Tianyou
2015-03-01
The regular grid discretization is prevalent in the inverse modeling for gravity and magnetic data. However, this subdivision strategy performs lower precision to represent the rugged observation surface. To deal with this problem, we evaluate a non-structured discretization method in which the subsurface with rolling terrain is divided into numbers of Delaunay triangular cells and each mesh has the uniform physical property distributions. The gravity and magnetic anomalies of a complex-shaped anomalous body are represented as the summaries of the single anomaly produced by each triangle field source. When inverting for the potential field data, we specify a minimization objective function composed of data constraints and then use the preconditioned conjugate gradient algorithm to iteratively solve the matrix minimization equations, where the preconditioner is determined by the distances between triangular cells and surface observers. We test our method using synthetic data; all tests return favorable results. In the case studies involving the gravity and magnetic anomalies of the Mengku and Pobei deposits in Xinjiang, northwest China, the inferred magnetite orebodies and ultrabasic rocks distributions are verified by the additional drilling and geological information. The discretization of constrained Delaunay triangulation provides an useful approach of computing and inverting the potential field data on the situations of undulate topography and complicated objects.
Mechaly, Ariel E; Bellomio, Augusto; Morante, Koldo; Agirre, Jon; Gil-Cartón, David; Valle, Mikel; González-Mañas, Juan Manuel; Guérin, Diego M A
2012-11-01
The recent high-resolution structure of the toxin FraC derived from the sea anemone Actinia fragacea has provided new insight into the mechanism of pore formation by actinoporins. In this work, we report two new crystal forms of FraC in its oligomeric prepore conformation. Together with the previously reported structure, these two new structures reveal that ring-like nonamers of the toxin assemble into compact two-dimensional hexagonal arrays. This supramolecular organization is maintained in different relative orientations adopted by the oligomers within the crystal layers. Analyses of the aggregation of FraC pores in both planar and curved (vesicles) model membranes show similar 2D hexagonal arrangements. Our observations support a model in which hexagonal pore-packing is a clustering mechanism that maximizes toxin-driven membrane damage in the target cell. PMID:22728830
NASA Astrophysics Data System (ADS)
Liu, L.; Liu, Y.; Wang, X.; Yu, D.; Liu, K.; Huang, H.; Hu, G.
2015-03-01
Flash floods have occurred frequently in the urban areas of southern China. An effective process-oriented urban flood inundation model is urgently needed for urban storm-water and emergency management. This study develops an efficient and flexible cellular automaton (CA) model to simulate storm-water runoff and the flood inundation process during extreme storm events. The process of infiltration, inlets discharge and flow dynamics can be simulated with little preprocessing on commonly available basic urban geographic data. In this model, a set of gravitational diverging rules are implemented to govern the water flow in a rectangular template of three cells by three cells of a raster layer. The model is calibrated by one storm event and validated by another in a small urban catchment in Guangzhou of southern China. The depth of accumulated water at the catchment outlet is interpreted from street-monitoring closed-circuit television (CCTV) videos and verified by on-site survey. A good level of agreement between the simulated process and the reality is reached for both storm events. The model reproduces the changing extent and depth of flooded areas at the catchment outlet with an accuracy of 4 cm in water depth. Comparisons with a physically based 2-D model (FloodMap) show that the model is capable of effectively simulating flow dynamics. The high computational efficiency of the CA model can meet the needs of city emergency management.
NASA Astrophysics Data System (ADS)
Zhao, Dongmiao; Tang, Jun; Wu, Xiuguang; Lin, Changning; Liu, Lijun; Chen, Jian
2016-05-01
A 2D vertical (2DV) numerical model, without σ-coordinate transformation in the vertical direction, is developed for the simulation of fl ow and sediment transport in open channels. In the model, time-averaged Reynolds equations are closed by the k-ɛ nonlinear turbulence model. The modifi ed Youngs-VOF method is introduced to capture free surface dynamics, and the free surface slope is simulated using the ELVIRA method. Based on the power-law scheme, the k-ɛ model and the suspended-load transport model are solved numerically with an implicit scheme applied in the vertical plane and an explicit scheme applied in the horizontal plane. Bedload transport is modeled using the Euler-WENO scheme, and the grid-closing skill is adopted to deal with the moving channel bed boundary. Verifi cation of the model using laboratory data shows that the model is able to adequately simulate fl ow and sediment transport in open channels, and is a good starting point for the study of sediment transport dynamics in strong nonlinear fl ow scenarios.
Revisiting 2D numerical models for the 19th century outbursts of η Carinae
NASA Astrophysics Data System (ADS)
González, R. F.; Villa, A. M.; Gómez, G. C.; de Gouveia Dal Pino, E. M.; Raga, A. C.; Cantó, J.; Velázquez, P. F.; de La Fuente, E.
2010-02-01
We present here new results of two-dimensional hydrodynamical simulations of the eruptive events of the 1840s (the great) and the 1890s (the minor) eruptions suffered by the massive star η Carinae (Car). The two bipolar nebulae commonly known as the Homunculus and the little Homunculus (LH) were formed from the interaction of these eruptive events with the underlying stellar wind. We assume here an interacting, non-spherical multiple-phase wind scenario to explain the shape and the kinematics of both Homunculi, but adopt a more realistic parametrization of the phases of the wind. During the 1890s eruptive event, the outflow speed decreased for a short period of time. This fact suggests that the LH is formed when the eruption ends, from the impact of the post-outburst η Car wind (that follows the 1890s event) with the eruptive flow (rather than by the collision of the eruptive flow with the pre-outburst wind, as claimed in previous models; González et al.). Our simulations reproduce quite well the shape and the observed expansion speed of the large Homunculus. The LH (which is embedded within the large Homunculus) becomes Rayleigh-Taylor unstable and develop filamentary structures that resemble the spatial features observed in the polar caps. In addition, we find that the interior cavity between the two Homunculi is partially filled by material that is expelled during the decades following the great eruption. This result may be connected with the observed double-shell structure in the polar lobes of the η Car nebula. Finally, as in previous work, we find the formation of tenuous, equatorial, high-speed features that seem to be related to the observed equatorial skirt of η Car.
A 2-D Test Problem for CFD Modeling Heat Transfer in Spent Fuel Transfer Cask Neutron Shields
Zigh, Ghani; Solis, Jorge; Fort, James A.
2011-01-14
In the United States, commercial spent nuclear fuel is typically moved from spent fuel pools to outdoor dry storage pads within a transfer cask system that provides radiation shielding to protect personnel and the surrounding environment. The transfer casks are cylindrical steel enclosures with integral gamma and neutron radiation shields. Since the transfer cask system must be passively cooled, decay heat removal from spent nuclear fuel canister is limited by the rate of heat transfer through the cask components, and natural convection from the transfer cask surface. The primary mode of heat transfer within the transfer cask system is conduction, but some cask designs incorporate a liquid neutron shield tank surrounding the transfer cask structural shell. In these systems, accurate prediction of natural convection within the neutron shield tank is an important part of assessing the overall thermal performance of the transfer cask system. The large-scale geometry of the neutron shield tank, which is typically an annulus approximately 2 meters in diameter but only 5-10 cm in thickness, and the relatively small scale velocities (typically less than 5 cm/s) represent a wide range of spatial and temporal scales that contribute to making this a challenging problem for computational fluid dynamics (CFD) modeling. Relevant experimental data at these scales are not available in the literature, but some recent modeling studies offer insights into numerical issues and solutions; however, the geometries in these studies, and for the experimental data in the literature at smaller scales, all have large annular gaps that are not prototypic of the transfer cask neutron shield. This paper presents results for a simple 2-D problem that is an effective numerical analog for the neutron shield application. Because it is 2-D, solutions can be obtained relatively quickly allowing a comparison and assessment of sensitivity to model parameter changes. Turbulence models are considered as
NASA Astrophysics Data System (ADS)
Tezkan, Bülent; Červ, Václav; Pek, Josef
1992-12-01
Anisotropy in magnetotelluric (MT) data has been found very often and has been explained as the result of local structures of different conductivities. In this paper, an observed anisotropy in MT data is not interpreted qualitatively in terms of local structures but is modelled quantitatively by a quasi-anisotropic layer. Besides the MT transfer functions, measurements of the vertical magnetic component are required. The second goal of this paper is to describe a method which permits the resolution of mid-crustal conductive layers in the presence of an additional high-conductivity layer at the surface. This method is possible in a two-dimensional (2-D) situation that limits the spatial extension of the surface structure. Again, vertical magnetic field recordings are necessary, but the phase of the E-polarization with respect to the 2-D structure is the most sensitive parameter. Using two field sites in Southern Germany, it has been possible to give a quantitative explanation of anisotropy and an improved depth resolution, and to derive an integrated conductivity of the highly conductive mid-crustal layers using MT and geomagnetic depth sounding data. The anisotropic highly conductive layer is located 12 km beneath the poorly conductive Black Forest crystalline rocks, whereas it is at a depth of 6 km beneath the highly conductive Rhine Graben sediments.
Hodge, Adam C; Fenster, Aaron; Downey, Dónal B; Ladak, Hanif M
2006-12-01
Boundary outlining, or segmentation, of the prostate is an important task in diagnosis and treatment planning for prostate cancer. This paper describes an algorithm based on two-dimensional (2D) active shape models (ASM) for semi-automatic segmentation of the prostate boundary from ultrasound images. Optimisation of the 2D ASM for prostatic ultrasound was done first by examining ASM construction and image search parameters. Extension of the algorithm to three-dimensional (3D) segmentation was then done using rotational-based slicing. Evaluation of the 3D segmentation algorithm used distance- and volume-based error metrics to compare algorithm generated boundary outlines to gold standard (manually generated) boundary outlines. Minimum description length landmark placement for ASM construction, and specific values for constraints and image search were found to be optimal. Evaluation of the algorithm versus gold standard boundaries found an average mean absolute distance of 1.09+/-0.49 mm, an average percent absolute volume difference of 3.28+/-3.16%, and a 5x speed increase versus manual segmentation. PMID:16930764
2009-01-01
Background The fibroblast-populated 3D collagen matrix is a model of tissue and healing which has been used since the 1980's. It was hypothesized that anchorage disruption of the collagen matrix would produce p53-dependent apoptosis in the embedded fibroblasts, but results of hypothesis testing were variant. Findings The response of p53 to anchorage disruption in 3D culture or to UV irradiation in 2D culture was influenced both by fibroblast strain and culture conditions. It also was determined that data scatter in a collagen matrix contraction assay was related to fibroblast strain and possibly to technical factors, such as cell culture technician and/or number of matrices utilized. Subsequent analysis suggested that phenotypic drift and/or inter-strain genetic variability may have been responsible for the data scatter. In addition, several technical factors were identified that may have contributed to the scatter. Conclusion Experimentation with human foreskin fibroblasts in both 2D and 3D culture can produce variant data. The underlying cause of the data scatter appears to be partially due to the biologic variability of the fibroblast. PMID:19922655
Jones, Edward H; Smith, Colin C
2005-12-01
This paper describes an investigation into non-equilibrium partitioning tracer transport and interaction with non-aqueous-phase liquid (NAPL) contaminated water-saturated porous media using a two-dimensional (2-D) physical modelling methodology. A fluorescent partitioning tracer is employed within a transparent porous model which when imaged by a CCD digital camera can provide full spatial tracer concentrations and tracer breakthrough curves. Quasi one-dimensional (1-D) benchmarking tests in models packed with various combinations of clean quartz sand and NAPL are described. These modelled residual NAPL saturations, S(n), of 0-15%. Results demonstrated that the fluorescent partitioning tracer was able to detect and quantify the presence of NAPL at low flow rates. At larger flow rates and/or higher NAPL saturations, the tracer increasingly underpredicted the NAPL volume as expected and this is attributed primarily to non-equilibrium partitioning. Despite little change in permeability, change in NAPL saturations from 4% to 8% resulted in significant NAPL saturation underestimates at the same flow rates implying coalescence of NAPL into wider separated but larger ganglia. A 2-D investigation of an idealised heterogeneous residual NAPL contaminated flow field indicated little permeability change in the NAPL contaminated zone and thus little flow bypassing, leading to reduced underpredictions of NAPL saturations than for equivalent quasi 1-D cases. This was attributed to increased 'sampling' of the NAPL by the tracer. The process is clearly visually identifiable from the experimental images. This rapid and relatively inexpensive experimental method is of value in laboratory studies of partitioning tracer behaviour in porous media; in particular, the ability to observe full field concentrations makes it valuable for the study of complex heterogeneous systems. PMID:16298415
NASA Astrophysics Data System (ADS)
Campforts, Benjamin; Vanacker, Veerle; Vanderborght, Jan; Baken, Stijn; Smolders, Erik; Govers, Gerard
2016-04-01
Meteoric 10Be allows for the quantification of vertical and lateral soil fluxes over long time scales (103-105 yr). However, the mobility of meteoric 10Be in the soil system makes a translation of meteoric 10Be inventories into erosion and deposition rates complex. Here, we present a spatially explicit 2D model simulating the behaviour of meteoric 10Be on a hillslope. The model consists of two parts. The first component deals with advective and diffusive mobility of meteoric 10Be within the soil profile, and the second component describes lateral soil and meteoric 10Be fluxes over the hillslope. Soil depth is calculated dynamically, accounting for soil production through weathering as well as downslope fluxes of soil due to creep, water and tillage erosion. Synthetic model simulations show that meteoric 10Be inventories can be related to erosion and deposition across a wide range of geomorphological and pedological settings. Our results also show that meteoric 10Be can be used as a tracer to detect human impact on soil fluxes for soils with a high affinity for meteoric 10Be. However, the quantification of vertical mobility is essential for a correct interpretation of the observed variations in meteoric 10Be profiles and inventories. Application of the Be2D model to natural conditions using data sets from the Southern Piedmont (Bacon et al., 2012) and Appalachian Mountains (Jungers et al., 2009; West et al., 2013) allows to reliably constrain parameter values. Good agreement between simulated and observed meteoric 10Be concentrations and inventories is obtained with realistic parameter values. Furthermore, our results provide detailed insights into the processes redistributing meteoric 10Be at the soil-hillslope scale.
Lithospheric architecture of the Levant Basin (Eastern Mediterranean region): A 2D modeling approach
NASA Astrophysics Data System (ADS)
Inati, Lama; Zeyen, Hermann; Nader, Fadi-Henri; Adelinet, Mathilde; Sursock, Alexandre; Rahhal, Muhsin Elie; Roure, Francois
2016-04-01
One of the major uncertainties regarding the Levant Basin, known to be the site of rifting in the Late Paleozoic and Early Mesozoic, concerns its deep crustal configuration despite numerous old and recent geophysical studies in this region. The aim of this study is to deduce the deep structure of the lithosphere underlying the easternmost Mediterranean region, in particular the Levant Basin and its margins, where the nature of the crust, continental versus oceanic, remains debated and has major implications on understanding the regional tectonic and thermal evolution, and on constraining potential petroleum systems. The algorithm used is a trial and error method that delivers the crustal thickness and the depth of the lithosphere-asthenosphere boundary (LAB) as well as the crustal density distribution by integrating surface heat flow data, free-air gravity anomaly, Geoid and topography data. Moho depth and crustal thickness were locally constrained by refraction data where available. The models representing two EW sections show a progressively attenuated crystalline crust in an EW direction (35 to 8 km). The SN section represents a 12 km thick crust to the south, thins to 9-7 km towards the Lebanese coast and reaches 20 km in the north. The crystalline crust is best interpreted as a strongly thinned continental crust under the Levant Basin, represented by two distinct components, an upper and a lower crust. Nevertheless, the Herodotus Basin shows a thin crust, likely oceanic, with a thickness between 6 and 10 kms. West of the Eratosthenes Seamount, a local crustal anomaly is interpreted to be the result of an underlying continental crust with a thickness of 13 kms. The Moho under the Arabian plate is 35-40 km deep and becomes shallower towards the Mediterranean coast. Within the Levant Basin, the Moho appears to be situated between 20 and 23 km, reaching 26 km in the Herodotus Basin. While depth to LAB is around 110 km under the Arabian and the Eurasian plates, it
Not Available
1980-07-31
The Department of Energy (DOE), Morgantown Energy Technology Center (METC) has been supporting the development of flow models for Devonian shale gas reservoirs. The broad objectives of this modeling program are to: (1) develop and validate a mathematical model which describes gas flow through Devonian shales; (2) determine the sensitive parameters that affect deliverability and recovery of gas from Devonian shales; (3) recommend laboratory and field measurements for determination of those parameters critical to the productivity and timely recovery of gas from the Devonian shales; (4) analyze pressure and rate transient data from observation and production gas wells to determine reservoir parameters and well performance; and (5) study and determine the overall performance of Devonian shale reservoirs in terms of well stimulation, well spacing, and resource recovery as a function of gross reservoir properties such as anisotropy, porosity and thickness variations, and boundary effects. During the previous annual period, a mathematical model describing gas flow through Devonian shales and the software for a radial one-dimensional numerical model for single well performance were completed and placed into operation. Although the radial flow model is a powerful tool for studying single well behavior, it is inadequate for determining the effects of well spacing, stimulation treatments, and variation in reservoir properties. Hence, it has been necessary to extend the model to two-dimensions, maintaining full capability regarding Klinkerberg effects, desorption, and shale matrix parameters. During the current annual period, the radial flow model has been successfully extended to provide the two-dimensional capability necessary for the attainment of overall program objectives, as described above.
NASA Astrophysics Data System (ADS)
Nale, J. P.; Gosain, A. K.; Khosa, R.
2015-12-01
Pinder River, one of major headstreams of River Ganga, originates in Pindari Glaciers of Kumaon Himalayas and after passing through rugged gorges meets Alaknanda at Karanprayag forming one of the five celestial confluences of Upper Ganga region. While other sub-basins of Upper Ganga are facing severe ecological losses, Pinder basin is still in its virginal state and is well known for its beautiful valleys besides being host to unique and rare biodiversity. A proposed 252 MW run-of-river hydroelectric project at Devsari on this river has been a major concern on account of its perceived potential for egregious environmental and social impacts. In this context, the study presented tries to analyse the expected changes in aquatic habitat conditions after this project is operational (with different operation policies). SWAT hydrological modelling platform has been used to derive stream flow simulations under various scenarios ranging from the present to the likely future conditions. To analyse the habitat conditions, a two dimensional hydraulic-habitat model 'River-2D', a module of iRIC software, is used. Snow trout has been identified as the target keystone species and its habitat preferences, in the form of flow depths, flow velocity and substrate condition, are obtained from diverse sources of related literature and are provided as Habitat Suitability Indices to River-2D. Bed morphology constitutes an important River-2D input and has been obtained, for the designated 1 km long study reach of Pinder upto Karanprayag, from a combination of actual field observations and supplemented by SRTM 1 Arc-Second Global digital elevation data. Monthly Weighted Usable Area for three different life stages (Spawning, Juvenile and Adult) of Snow Trout are obtained corresponding to seven different flow discharges ranging from 10 cumec to 1000 cumec. Comparing the present and proposed future river flow conditions obtained from SWAT modelling, losses in Weighted Usable Area, for the
Gucy2f zebrafish knockdown – a model for Gucy2d-related leber congenital amaurosis
Stiebel-Kalish, Hadas; Reich, Ehud; Rainy, Nir; Vatine, Gad; Nisgav, Yael; Tovar, Anna; Gothilf, Yoav; Bach, Michael
2012-01-01
Mutations in retinal-specific guanylate cyclase (Gucy2d) are associated with Leber congenital amaurosis-1 (LCA1). Zebrafish offer unique advantages relative to rodents, including their excellent color vision, precocious retinal development, robust visual testing strategies, low cost, relatively easy transgenesis and shortened experimental times. In this study we will demonstrate the feasibility of using gene-targeting in the zebrafish as a model for the photoreceptor-specific GUCY2D-related LCA1, by reporting the visual phenotype and retinal histology resulting from Gucy2f knockdown. Gucy2f zebrafish LCA-orthologous cDNA was identified and isolated by PCR amplification. Its expression pattern was determined by whole-mount in-situ hybridization and its function was studied by gene knockdown using two different morpholino-modified oligos (MO), one that blocks translation of Gucy2f and one that blocks splicing of Gucy2f. Visual function was assessed with an optomotor assay on 6-days-post-fertilization larvae, and by analyzing changes in retinal histology. Gucy2f knockdown resulted in significantly lower vision as measured by the optomotor response compared with uninjected and control MO-injected zebrafish larvae. Histological changes in the Gucy2f-knockdown larvae included loss and shortening of cone and rod outer segments. A zebrafish model of Gucy2f-related LCA1 displays early visual dysfunction and photoreceptor layer dystrophy. This study serves as proof of concept for the use of zebrafish as a simple, inexpensive model with excellent vision on which further study of LCA-related genes is possible. PMID:22378290
NASA Astrophysics Data System (ADS)
Hahn-Woernle, Lisa; Dijkstra, Henk A.; van der Woerd, Hans J.
2013-04-01
Constraints on values of biological parameters by observed turbulence in a quasi-2D phytoplankton model of the North Atlantic Session and Session Number: Scaling and complex Physical and Biogeophysical Processes in the Atmosphere, Ocean and climate (NP3.1) Preferred Mode of Presentation: Oral Lisa Hahn-Woernle¹, Henk A. Dijkstra¹ & Hans J. van der Woerd² 1. Institute for Marine and Atmospheric research Utrecht, Utrecht University, Princetonplein 5, 3584 CC Utrecht, The Netherlands. 2. Institute for Environmental Studies, VU University, De Boelelaan 1085, 1081 HV Amsterdam, The Netherlands. During the STRATIPHYT cruises in Summer 2009 and Spring 2011 in-situ plankton and nutrient concentrations as well as upper-ocean turbulence characteristics were measured from Las Palmas to Reykjavik [1,2]. The measurements agree with previous findings that the incoming light intensity and the stratification of the upper ocean set important conditions for the initiation of the phytoplankton bloom close to the surface and also for a possible shift to a deep chlorophyll maximum below the mixed layer. These strong characteristic spatial patterns and temporal cycles of phytoplankton surface concentration are also observed in satellite images of chlorophyll-a concentration in the Northern Atlantic. To understand the meridional depth (upper 200 m) variation of the phytoplankton distributions, a quasi-2D phytoplankton model was used. The results indicate that with the given profiles of the turbulent vertical mixing coefficient, only a very limited interval for the biological model parameters leads to the observed depth of the phytoplankton maximum. [1] E. Jurado, H. van der Woerd and H. A. Dijkstra, Microstructure measurements along a quasi-meridional transect in the North Atlantic, J. Geophysical Res. Oceans, 117, C04016, doi:10.1029/2011JC007137, (2012). [2] E. Jurado, H. A. Dijkstra and H. van der Woerd, Microstructure observations during the spring 2011 STRATIPHYT-II cruise in the
A unified approach to the power law and the critical state modeling of superconductors in 2D
NASA Astrophysics Data System (ADS)
Morandi, Antonio; Fabbri, Massimo
2015-02-01
Two main options exist for modeling the non-linearity of the superconductor: the power law and the critical state model. A vanishing electric field is predicted by the critical state model, which does not take into account relaxation phenomena. The power law model is to be used if flux creep is to be taken into account. However, detectable flux creep may not occur in many operating conditions. In these cases the critical state represents a more accurate modeling option. The existing numerical tools usually incorporate either the power law with a finite n-exponent or the critical state model, not both. A numerical model which incorporates both the power law and the critical state modeling of superconductors in 2D is developed in this paper. The same mathematical formulation and discretization method are used in both of the cases, and the same matrix equation is obtained. The difference between the two models only arises when the solution of the matrix equation is dealt with. The model is implemented by means of one unique computer code. The discretization can be made by means of both triangular and rectangular meshes. A circuit interpretation of the model is also introduced. The equivalence of the proposed method with the variational approach reported in the literature for dealing with the critical state is also discussed in the paper. The numerical results for some cases of practical interest are presented. The difference between the results obtained by means of the two models in terms of current distribution and ac loss is pointed out.
2D radiative-magnetohydrostatic model of a prominence observed by Hinode, SoHO/SUMER and Meudon/MSDP
NASA Astrophysics Data System (ADS)
Berlicki, A.; Gunar, S.; Heinzel, P.; Schmieder, B.; Schwartz, P.
2011-06-01
Aims: Prominences observed by Hinode show very dynamical and intriguing structures. To understand the mechanisms that are responsible for these moving structures, it is important to know the physical conditions that prevail in fine-structure threads. In the present work we analyse a quiescent prominence with fine structures, which exhibits dynamic behaviour, which was observed in the hydrogen Hα line with Hinode/SOT, Meudon/MSDP and Ondřejov/HSFA2, and simultaneously in hydrogen Lyman lines with SoHO/SUMER during a coordinated campaign. We derive the fine-structure physical parameters of this prominence and also address the questions of the role of the magnetic dips and of the interpretation of the flows. Methods: We calibrate the SoHO/SUMER and Meudon/MSDP data and obtain the line profiles of the hydrogen Lyman series (Lβ to L6), the Ciii (977.03 Å) and Svi (933.40 Å), and Hα along the slit of SoHO/SUMER that crosses the Hinode/SOT prominence. We employ a complex 2D radiation-magnetohydrostatic (RMHS) modelling technique to properly interpret the observed spectral lines and derive the physical parameters of interest. The model was constrained not only with integrated intensities of the lines, but also with the hydrogen line profiles. Results: The slit of SoHO/SUMER is crossing different prominence structures: threads and dark bubbles. Comparing the observed integrated intensities, the depressions of Hα bubbles are clearly identified in the Lyman, Ciii, and Svi lines. To fit the observations, we propose a new 2D model with the following parameters: T = 8000 K, pcen = 0.035 dyn cm-2, B = 5 Gauss, ne = 1010 cm-3, 40 threads each 1000 km wide, plasma β is 3.5 × 10-2. Conclusions: The analysis of Ciii and Svi emission in dark Hα bubbles allows us to conclude that there is no excess of a hotter plasma in these bubbles. The new 2D model allows us to diagnose the orientation of the magnetic field versus the LOS. The 40 threads are integrated along the LOS. We
Using overlapping sonobuoy data from the Ross Sea to construct a 2D deep crustal velocity model
NASA Astrophysics Data System (ADS)
Selvans, M. M.; Clayton, R. W.; Stock, J. M.; Granot, R.
2012-03-01
Sonobuoys provide an alternative to using long streamers while conducting multi-channel seismic (MCS) studies, in order to provide deeper velocity control. We present analysis and modeling techniques for interpreting the sonobuoy data and illustrate the method with ten overlapping sonobuoys collected in the Ross Sea, offshore from Antarctica. We demonstrate the importance of using the MCS data to correct for ocean currents and changes in ship navigation, which is required before using standard methods for obtaining a 1D velocity profile from each sonobuoy. We verify our 1D velocity models using acoustic finite-difference (FD) modeling and by performing depth migration on the data, and demonstrate the usefulness of FD modeling for tying interval velocities to the shallow crust imaged using MCS data. Finally, we show how overlapping sonobuoys along an MCS line can be used to construct a 2D velocity model of the crust. The velocity model reveals a thin crust (5.5 ± 0.4 km) at the boundary between the Adare and Northern Basins, and implies that the crustal structure of the Northern Basin may be more similar to that of the oceanic crust in the Adare Basin than to the stretched continental crust further south in the Ross Sea.
Building 2D wide-area site models from single- and multipass single-polarization SAR data
NASA Astrophysics Data System (ADS)
Kuttikkad, Shyam; Chellappa, Rama; Novak, Leslie M.
1996-06-01
Wide area site models are useful for delineating regions of interest and assisting in tasks like monitoring and change detection. They are also useful in registering a newly acquired image to an existing one of the same site, or to a map. This paper presents an algorithm for building a 2D wide area site model from high resolution, single polarization synthetic aperture radar (SAR) data. A three stage algorithm, involving detection of bright pixels, statistical segmentation of the data into homogeneous regions, and labeling/validation of segmentation results, is used for this task. Constant false alarm rate (CFAR) detectors are used for detecting bright pixels. Under assumptions of a suitable model for the statistical distribution of single polarization intensity or complex data, maximum likelihood labeling is used for initial segmentation. Knowledge of the acquisition parameters and other geometric cues are used to refine the initial segmentation and to extract man-made objects like buildings, and their shadows, as well as roads, from these images. When data from multiple passes of the same site is available, site models yield feature points which can be used to register the different images. In case complete information regarding the radar location, heading, and depression angle are available, the multiple views can be registered prior to site model construction, leading to improved performance. Site models are also useful for SAR data compression, where possible targets, man-made objects, and their neighborhoods are compressed losslessly and the background regions are compressed using lossy schemes.
NASA Astrophysics Data System (ADS)
Zischg, Andreas Paul; Felder, Guido; WWeingartner, Rolf
2015-04-01
The catchment of the river Aare upstream of Bern, Switzerland, with an area of approx. 3000 km2 is a complex network of sub-catchments with different runoff characteristics; it also includes two larger lakes. Most of the rivers were regulated in the 18th century. An important regulation, however, was realised as early as in the 17th century. For this catchment, the worst case flood event was identified and its consequences were analysed. Beside the hydro-meteorological characteristics, an important basis to model the worst case flood is to understand the non-linear effects of flood retention in the valley bottom and in the lakes. The aim of this study was to compare these effects based on both the current river network and the historic one prior to the main river training works. This allows to quantify the human impacts. Methodologically, we set up a coupled 2D flood model representing the floodplains of the river Aare as well as of the tributaries Lombach, Lütschine, Zulg, Rotache, Chise and Guerbe. The flood simulation was made in 2D with the software BASEMENT-ETH (Vetsch et al. 2014). The model was calibrated by means of reproducing the large floods in August 2005 and the bankfull discharge for all river reaches. The model computes the discharge at the outlet of the Aare catchment at Bern by routing all discharges from the sub-catchments through the river reaches and their floodplains. With this, the modulation of the input hydrographs by widespread floodings in the floodplains can be quantified. The same configuration was applied on the basis of reconstructed digital terrain models representing the landscape and the river network before the first significant river training works had been realised. This terrain model was reconstructed by georeferencing and digitalizing historic maps and cross-sections combined with the mapping of the geomorphologic evidences of former river structures in non-modified areas. The latter mapping procedure was facilitated by the
NASA Astrophysics Data System (ADS)
Horritt, M. S.; Bates, P. D.; Mattinson, M. J.
2006-09-01
SummaryThe effects of mesh resolution and topographic data quality on the predictions of a 2D finite volume model of channel flow are investigated. 25 cm resolution side scan sonar swath bathymetry of a 7 km reach of the river Thames, UK, provides topography for a series of finite volume models with resolutions ranging from 2.5 to 50 m. Results from the coarser meshes are compared with the 2.5 m simulation which is used as a benchmark. The model shows greater sensitivity to mesh resolution than topographic sampling. Sensitivity to mesh resolution is attributed to two effects of roughly equal magnitude. Small elements are able to represent hydraulic features such as recirculation zones, and a more accurate representation of the domain boundary helps to drive these flow features. In practical terms, a models at a resolution of 20 and 50 m require 50 m cross-sections, whereas the 10 m model predictions are improved by using all the bathymetry data.
NASA Astrophysics Data System (ADS)
Schaa, R.; Gross, L.; du Plessis, J.
2016-04-01
We present a general finite-element solver, escript, tailored to solve geophysical forward and inverse modeling problems in terms of partial differential equations (PDEs) with suitable boundary conditions. Escript’s abstract interface allows geoscientists to focus on solving the actual problem without being experts in numerical modeling. General-purpose finite element solvers have found wide use especially in engineering fields and find increasing application in the geophysical disciplines as these offer a single interface to tackle different geophysical problems. These solvers are useful for data interpretation and for research, but can also be a useful tool in educational settings. This paper serves as an introduction into PDE-based modeling with escript where we demonstrate in detail how escript is used to solve two different forward modeling problems from applied geophysics (3D DC resistivity and 2D magnetotellurics). Based on these two different cases, other geophysical modeling work can easily be realized. The escript package is implemented as a Python library and allows the solution of coupled, linear or non-linear, time-dependent PDEs. Parallel execution for both shared and distributed memory architectures is supported and can be used without modifications to the scripts.
NASA Astrophysics Data System (ADS)
LeVeque, R. J.; Motley, M. R.
2015-12-01
A series of tsunami wave basin experiments of flow through a scale model of Seaside, Oregon have been used as validation data for a 2015 benchmarking workshop hosted by the National Tsunami Mitigation Program, which focused on better understanding the ability of tsunami models to predict flow velocities and inundation depths following a coastal inundation event. As researchers begin to assess the safety of coastal infrastructures, proper assessment of tsunami-induced forces on coastal structures is critical. Hydrodynamic forces on these structures are fundamentally proportional to the local momentum flux of the fluid, and experimental data included momentum flux measurements at many instrumented gauge locations. The GeoClaw tsunami model, which solves the two-dimensional shallow water equations, was compared against other codes during the benchmarking workshop, and more recently a three-dimensional computational fluid dynamics model using the open-source OpenFOAM software has been developed and results from this model are being compared with both the experimental data and the 2D GeoClaw results. In addition, the 3D model allows for computation of fluid forces on the faces of structures, permitting an investigation of the common use of momentum flux as a proxy for these forces. This work aims to assess the potential to apply these momentum flux predictions locally within the model to determine tsunami-induced forces on critical structures. Difficulties in working with these data sets and cross-model comparisons will be discussed. Ultimately, application of the more computationally efficient GeoClaw model, informed by the 3D OpenFOAM models, to predict forces on structures at the community scale can be expected to improve the safety and resilience of coastal communities.
NASA Astrophysics Data System (ADS)
Simão Ferreira, C. J.; Bijl, H.; van Bussel, G.; van Kuik, G.
2007-07-01
The implementation of wind energy conversion systems in the built environment renewed the interest and the research on Vertical Axis Wind Turbines (VAWT), which in this application present several advantages over Horizontal Axis Wind Turbines (HAWT). The VAWT has an inherent unsteady aerodynamic behavior due to the variation of angle of attack with the angle of rotation, perceived velocity and consequentially Reynolds number. The phenomenon of dynamic stall is then an intrinsic effect of the operation of a Vertical Axis Wind Turbine at low tip speed ratios, having a significant impact in both loads and power. The complexity of the unsteady aerodynamics of the VAWT makes it extremely attractive to be analyzed using Computational Fluid Dynamics (CFD) models, where an approximation of the continuity and momentum equations of the Navier-Stokes equations set is solved. The complexity of the problem and the need for new design approaches for VAWT for the built environment has driven the authors of this work to focus the research of CFD modeling of VAWT on: •comparing the results between commonly used turbulence models: URANS (Spalart-Allmaras and k-epsilon) and large eddy models (Large Eddy Simulation and Detached Eddy Simulation) •verifying the sensitivity of the model to its grid refinement (space and time), •evaluating the suitability of using Particle Image Velocimetry (PIV) experimental data for model validation. The 2D model created represents the middle section of a single bladed VAWT with infinite aspect ratio. The model simulates the experimental work of flow field measurement using Particle Image Velocimetry by Simão Ferreira et al for a single bladed VAWT. The results show the suitability of the PIV data for the validation of the model, the need for accurate simulation of the large eddies and the sensitivity of the model to grid refinement.
SU-E-T-430: Modeling MLC Leaf End in 2D for Sliding Window IMRT and Arc Therapy
Liang, X; Zhu, T
2014-06-01
Purpose: To develop a 2D geometric model for MLC accounting for leaf end dose leakage for dynamic IMRT and Rapidarc therapy. Methods: Leaf-end dose leakage is one of the problems for MLC dose calculation and modeling. Dosimetric leaf gap used to model the MLC and to count for leakage in dose calculation, but may not be accurate for smaller leaf gaps. We propose another geometric modeling method to compensate for the MLC round-shape leaf ends dose leakage, and improve the accuracy of dose calculation and dose verification. A triangular function is used to geometrically model the MLC leaf end leakage in the leaf motion direction, and a step function is used in the perpendicular direction. Dose measurements with different leaf gap, different window width, and different window height were conducted, and the results were used to fit the analytical model to get the model parameters. Results: Analytical models have been obtained for stop-and-shoot and dynamic modes for MLC motion. Parameters a=0.4, lw'=5.0 mm for 6X and a=0.54, lw'=4.1 mm for 15x were obtained from the fitting process. The proposed MLC leaf end model improves the dose profile at the two ends of the sliding window opening. This improvement is especially significant for smaller sliding window openings, which are commonly used for highly modulated IMRT plans and arc therapy plans. Conclusion: This work models the MLC round leaf end shape and movement pattern for IMRT dose calculation. The theory, as well as the results in this work provides a useful tool for photon beam IMRT dose calculation and verification.
NASA Astrophysics Data System (ADS)
Dages, Cecile; Samouelian, Anatja; Lanoix, Marthe; Dollinger, Jeanne; Chakkour, Sara; Chovelon, Gabrielle; Trabelsi, Khouloud; Voltz, Marc
2015-04-01
Ditches are involved in the transfer of pesticide to surface and groundwaters (e.g. Louchart et al., 2001). Soil horizons underlying ditch beds may present specific soil characteristics compared to neighbouring field soils due to erosion/deposition processes, to the specific biological activities (rooting dynamic and animal habitat) in the ditches (e.g. Vaughan et al., 2008) and to management practices (burning, dredging, mowing,...). Moreover, in contrast to percolation processes in field soils that can be assumed to be mainly 1D vertical, those occurring in the ditch beds are by essence 2D or even 3D. Nevertheless, due to a lake of knowledge, these specific aspects of transfer within ditch beds are generally omitted for hydrological simulation at the catchment scale (Mottes et al., 2014). Accordingly, the aims of this study were i) to characterize subsurface solute transfer through ditch beds and ii) to determine equivalent hydraulic parameters of the ditch beds for use in catchment scale hydrological simulations. A complementary aim was to evaluate the error in predictions performed when percolation in ditches is assumed to be similar to that in the neighbouring field soil. First, bromide transfer experiments were performed on undisturbed soil column (15 cm long with a 15 cm inner-diameter), horizontally and vertically sampled within each soil horizon underlying a ditch bed and within the neighboring field. Columns were sampled at the Roujan catchment (Hérault, France), which belongs to the long term Mediterranean hydrological observatory OMERE (Voltz and Albergel, 2002). Second, for each column, a set of parameters was determined by inverse optimization with mobile-immobile or dual permeability models, with CXTFIT (Toride et al., 1999) or with HYDRUS (Simunek et al., 1998). Third, infiltration and percolation in the ditch was simulated by a 2D flow domain approach considering the 2D variation in hydraulic properties of the cross section of a ditch bed. Last
NASA Astrophysics Data System (ADS)
Liu, L.; Liu, Y.; Wang, X.; Yu, D.; Liu, K.; Huang, H.; Hu, G.
2014-09-01
Flash floods have occurred frequently and severely in the urban areas of South China. An effective process-oriented urban flood inundation model becomes an urgent demand for urban storm water and emergency management. This study develops an effective and flexible cellular automaton (CA) model to simulate storm water runoff and the flood inundation process during extreme storm events. The process of infiltration, inlets discharge and flow dynamic can be simulated only with little pre-processing on commonly available basic urban geographic data. In this model, a set of gravitational diverging rules are implemented in a cellular automation (CA) model to govern the water flow in a 3 x 3 cell template of a raster layer. The model is calibrated by one storm event and validated by another in a small urban catchment in Guangzhou of Southern China. The depth of accumulated water at the catchment outlet is interpreted from street monitoring sensors and verified by on-site survey. A good level of agreement between the simulated process and the reality is reached for both storm events. The model reproduces the changing extent and depth of flooded areas at the catchment outlet with an accuracy of 4 cm in water depth. Comparisons with a physically-based 2-D model (FloodMap) results show that the model have the capability of simulating flow dynamics. The high computational efficiency of CA model can satisfy the demand of city emergency management. The encouraging results of the simulations demonstrate that the CA-based approach is capable of effectively representing the key processes associated with a storm event and reproducing the process of water accumulation at the catchment outlet for making process-considered city emergency management decisions.
NASA Technical Reports Server (NTRS)
Li, Xiao-Fan; Sui, C.-H.; Lau, K.-M.; Tao, W.-K.
2004-01-01
Prognostic cloud schemes are increasingly used in weather and climate models in order to better treat cloud-radiation processes. Simplifications are often made in such schemes for computational efficiency, like the scheme being used in the National Centers for Environment Prediction models that excludes some microphysical processes and precipitation-radiation interaction. In this study, sensitivity tests with a 2D cloud resolving model are carried out to examine effects of the excluded microphysical processes and precipitation-radiation interaction on tropical thermodynamics and cloud properties. The model is integrated for 10 days with the imposed vertical velocity derived from the Tropical Ocean Global Atmosphere Coupled Ocean-Atmosphere Response Experiment. The experiment excluding the depositional growth of snow from cloud ice shows anomalous growth of cloud ice and more than 20% increase of fractional cloud cover, indicating that the lack of the depositional snow growth causes unrealistically large mixing ratio of cloud ice. The experiment excluding the precipitation-radiation interaction displays a significant cooling and drying bias. The analysis of heat and moisture budgets shows that the simulation without the interaction produces more stable upper troposphere and more unstable mid and lower troposphere than does the simulation with the interaction. Thus, the suppressed growth of ice clouds in upper troposphere and stronger radiative cooling in mid and lower troposphere are responsible for the cooling bias, and less evaporation of rain associated with the large-scale subsidence induces the drying in mid and lower troposphere.
NASA Astrophysics Data System (ADS)
Kwan, Thomas; Huang, Chengkun; Carlsten, Bruce
2012-10-01
Understanding CSR effects in a bunch compressor requires accurate and self-consistent dynamical simulations accounting for the realistic beam shape and parameters, transient dynamics and possibly a material boundary. We first extend the well-known 1D CSR model into two dimensions and develop a simple numerical algorithm based on the Lienard-Wiechert formula for the electric field of a stiff beam. This numerical model includes the 2D spatial dependence of the field in the bending plane and is accurate for arbitrary beam energy. It also removes the singularity in space charge field presented in a 1D model. Good agreement is obtained with 1D CSR analytic [1] result for FEL related beam parameters but deviations are also found for low-energy or large spot size beams and off-axis fields. We also employ fully electromagnetic Particle-In-Cell (PIC) simulations for self-consistent CSR modeling. The relatively large numerical phase error and anisotropy in a standard PIC algorithm is improved with a high order Finite Difference Time Domain scheme. Detail self-consistent PIC simulations of the CSR fields and beam dynamics will be presented and discussed.
From 2D to 3D--a New Dimension for Modelling the Effect of Natural Products on Human Tissue.
Wrzesinski, Krzysztof; Fey, Stephen J
2015-01-01
Natural products, or their synthetic derivatives are a treasure trove to find potential candidates for novel drugs for human treatment. The selection of diamonds from the huge pile of worthless stone is a critical--and difficult--stage in the discovery pipeline. Of all the factors to be considered, perhaps the most important, is that the compound should have the desired effect on the tissue in vivo. Since it is not possible (or ethical) to test all compounds in vivo one must preselect using a surrogate assay system. While animal models have the advantage of being holistic and current 3D culture systems are reductionistic, they at least can be constructed from human cell types. In this review we will consider some of the evidence demonstrating that cells grown in 3D cultures have physiological performances that mimic functions seen in human tissues significantly better than cells grown using classical 2D culture systems. We will discuss advantages and disadvantages of these new culture technologies and highlight theoretical reasons for the differences. 3D cell culture technologies are more labour intensive than 2D culture systems and therefore their introduction is a trade-off between the value of obtaining data that is more relevant to the human condition against their through-put. It is already clear that future in vitro 3D systems will become more complex, using multiple cell types to more faithfully represent a particular tissue or even organ system. And one thing is sure - the diamonds are not easy to find! PMID:26429710
Modeling Coastal Salinity in Quasi 2D and 3D Using a DUALEM-421 and Inversion Software.
Davies, Gareth; Huang, Jingyi; Monteiro Santos, Fernando Acacio; Triantafilis, John
2015-01-01
Rising sea levels, owing to climate change, are a threat to fresh water coastal aquifers. This is because saline intrusions are caused by increases and intensification of medium-large scale influences including sea level rise, wave climate, tidal cycles, and shifts in beach morphology. Methods are therefore required to understand the dynamics of these interactions. While traditional borehole and galvanic contact resistivity (GCR) techniques have been successful they are time-consuming. Alternatively, frequency-domain electromagnetic (FEM) induction is potentially useful as physical contact with the ground is not required. A DUALEM-421 and EM4Soil inversion software package are used to develop a quasi two- (2D) and quasi three-dimensional (3D) electromagnetic conductivity images (EMCI) across Long Reef Beach located north of Sydney Harbour, New South Wales, Australia. The quasi 2D models discern: the dry sand (<10 mS/m) associated with the incipient dune; sand with fresh water (10 to 20 mS/m); mixing of fresh and saline water (20 to 500 mS/m), and; saline sand of varying moisture (more than 500 mS/m). The quasi 3D EMCIs generated for low and high tides suggest that daily tidal cycles do not have a significant effect on local groundwater salinity. Instead, the saline intrusion is most likely influenced by medium-large scale drivers including local wave climate and morphology along this wave-dominated beach. Further research is required to elucidate the influence of spring-neap tidal cycles, contrasting beach morphological states and sea level rise. PMID:25053423
NASA Astrophysics Data System (ADS)
Posmentier, E. S.; Faiia, A.; Feng, X.; Michel, F. A.
2009-12-01
The most widely cited climate feedback in the Arctic region is ice cover. Warming climate reduces the sea ice extent, which causes a lower surface albedo, resulting in more absorbed insolation and further warming - a positive feedback. Conversely, warming is also likely to result in increased Arctic evaporation and precipitation, leading to increased snow cover and a higher Arctic terrestrial albedo, which would cause cooling - a negative feedback. The balance between these feedbacks must be understood and quantified in order to predict climate response to influences such as increased greenhouse gases. Here, we use measurements of high latitude precipitation isotopes and a 2D model to investigate interannual variability in the contributions of subtropical and Arctic vapor sources to Arctic precipitation. In a previous study, we used isotopic ratios alone to investigate the sources of moisture to the Arctic. We found significant positive relationships between ice area and the d-excess of precipitation on both interannual and seasonal timescales, an expected result under the assumption that sea ice prevents evaporation from the sea surface and consequently reduces the contribution of Arctic moisture with low d-excess values to Arctic precipitation. In this work, we go a step further with an attempt to estimate the influence of sea ice cover on Arctic evaporation using a 2D model and constraining it with high latitude isotopic measurements. The 2D model is a vertical-meridional mass conservation model for H2O, HDO, and H218O with prescribed atmospheric circulation and temperatures. For each isotope, the rates of surface evaporation, sublimation, precipitation, and reevaporation of falling hydrometeors are calculated, and values of the humidity and isotopic concentrations of both vapor and hydrometeors are computed interdependently with the four process rates.. The model fractionation associated with the four processes is based primarily on the work of Jouzel and
Wortham, Brian W; Eppert, Bryan L; Motz, Greg T; Flury, Jennifer L; Orozco-Levi, Mauricio; Hoebe, Kasper; Panos, Ralph J; Maxfield, Melissa; Glasser, Stephan W; Senft, Albert P; Raulet, David H; Borchers, Michael T
2012-05-01
Chronic obstructive pulmonary disease (COPD) is characterized by peribronchial and perivascular inflammation and largely irreversible airflow obstruction. Acute disease exacerbations, due frequently to viral infections, lead to enhanced disease symptoms and contribute to long-term progression of COPD pathology. Previously, we demonstrated that NK cells from cigarette smoke (CS)-exposed mice exhibit enhanced effector functions in response to stimulating cytokines or TLR ligands. In this article, we show that the activating receptor NKG2D is a key mediator for CS-stimulated NK cell hyperresponsiveness, because CS-exposed NKG2D-deficient mice (Klrk1(-/-)) did not exhibit enhanced effector functions as assessed by cytokine responsiveness. NK cell cytotoxicity against MHC class I-deficient targets was not affected in a COPD model. However, NK cells from CS-exposed mice exhibit greater cytotoxic activity toward cells that express the NKG2D ligand RAET1ε. We also demonstrate that NKG2D-deficient mice exhibit diminished airway damage and reduced inflammation in a model of viral COPD exacerbation, which do not affect viral clearance. Furthermore, adoptive transfer of NKG2D(+) NK cells into CS-exposed, influenza-infected NKG2D-deficient mice recapitulated the phenotypes observed in CS-exposed, influenza-infected wild-type mice. Our findings indicate that NKG2D stimulation during long-term CS exposure is a central pathway in the development of NK cell hyperresponsiveness and influenza-mediated exacerbations of COPD. PMID:22467655
Numerical model of water flow and solute accumulation in vertisols using HYDRUS 2D/3D code
NASA Astrophysics Data System (ADS)
Weiss, Tomáš; Dahan, Ofer; Turkeltub, Tuvia
2015-04-01
Keywords: dessication-crack-induced-salinization, preferential flow, conceptual model, numerical model, vadose zone, vertisols, soil water retention function, HYDRUS 2D/3D Vertisols cover a hydrologically very significant area of semi-arid regions often through which water infiltrates to groundwater aquifers. Understanding of water flow and solute accumulation is thus very relevant to agricultural activity and water resources management. Previous works suggest a conceptual model of dessication-crack-induced-salinization where salinization of sediment in the deep section of the vadose zone (up to 4 m) is induced by subsurface evaporation due to convective air flow in the dessication cracks. It suggests that the salinization is induced by the hydraulic gradient between the dry sediment in the vicinity of cracks (low potential) and the relatively wet sediment further from the main cracks (high potential). This paper presents a modified previously suggested conceptual model and a numerical model. The model uses a simple uniform flow approach but unconventionally prescribes the boundary conditions and the hydraulic parameters of soil. The numerical model is bound to one location close to a dairy farm waste lagoon, but the application of the suggested conceptual model could be possibly extended to all semi-arid regions with vertisols. Simulations were conducted using several modeling approaches with an ultimate goal of fitting the simulation results to the controlling variables measured in the field: temporal variation in water content across thick layer of unsaturated clay sediment (>10 m), sediment salinity and salinity the water draining down the vadose zone to the water table. The development of the model was engineered in several steps; all computed as forward solutions by try-and-error approach. The model suggests very deep instant infiltration of fresh water up to 12 m, which is also supported by the field data. The paper suggests prescribing a special atmospheric
NASA Astrophysics Data System (ADS)
Kirnev, G.; Fundamenski, W.; Corrigan, G.
2007-06-01
The scrape-off layer (SOL) of the JET tokamak has been modelled using a two-dimensional plasma/neutral code, EDGE2D/NIMBUS, with variable transport coefficients, chosen according to nine candidate theories for radial heat transport in the SOL. Comparison of the radial power width on the outer divertor plates, λq, predicted by modelling and measured experimentally in L-mode and ELM-averaged H-mode at JET is presented. Transport coefficients based on classical and neo-classical ion conduction are found to offer the best agreement with experimentally measured λq magnitude and scaling with target power, upstream density and toroidal field. These results reinforce the findings of an earlier study, based on a simplified model of the SOL (Chankin 1997 Plasma Phys. Control. Fusion 39 1059), and support the earlier estimate of the power width at the entrance of the outer divertor volume in ITER, λq ap 4 mm mapped to the outer mid-plane (Fundamenski et al 2004 Nucl. Fusion 44 20).
NASA Astrophysics Data System (ADS)
Kim, Joon Hyun; Kwon, Woo Jin; Shin, Yong-Il
2016-05-01
In a recent experiment, it was found that the dissipative evolution of a corotating vortex pair in a trapped Bose-Einstein condensate is well described by a point vortex model with longitudinal friction on the vortex motion and the thermal friction coefficient was determined as a function of sample temperature. In this poster, we present a numerical study on the relaxation of 2D superfluid turbulence based on the dissipative point vortex model. We consider a homogeneous system in a cylindrical trap having randomly distributed vortices and implement the vortex-antivortex pair annihilation by removing a pair when its separation becomes smaller than a certain threshold value. We characterize the relaxation of the turbulent vortex states with the decay time required for the vortex number to be reduced to a quarter of initial number. We find the vortex decay time is inversely proportional to the thermal friction coefficient. In particular, we observe the decay times obtained from this work show good quantitative agreement with the experimental results in, indicating that in spite of its simplicity, the point vortex model reasonably captures the physics in the relaxation dynamics of the real system.
NASA Astrophysics Data System (ADS)
Kim, Ho Jun; Lee, Hae June
2016-06-01
The wide applicability of capacitively coupled plasma (CCP) deposition has increased the interest in developing comprehensive numerical models, but CCP imposes a tremendous computational cost when conducting a transient analysis in a three-dimensional (3D) model which reflects the real geometry of reactors. In particular, the detailed flow features of reactive gases induced by 3D geometric effects need to be considered for the precise calculation of radical distribution of reactive species. Thus, an alternative inclusive method for the numerical simulation of CCP deposition is proposed to simulate a two-dimensional (2D) CCP model based on the 3D gas flow results by simulating flow, temperature, and species fields in a 3D space at first without calculating the plasma chemistry. A numerical study of a cylindrical showerhead-electrode CCP reactor was conducted for particular cases of SiH4/NH3/N2/He gas mixture to deposit a hydrogenated silicon nitride (SiN x H y ) film. The proposed methodology produces numerical results for a 300 mm wafer deposition reactor which agree very well with the deposition rate profile measured experimentally along the wafer radius.
Understanding the Impact of 2D and 3D Fibroblast Cultures on In Vitro Breast Cancer Models
Sung, Kyung Eun; Su, Xiaojing; Berthier, Erwin; Pehlke, Carolyn; Friedl, Andreas; Beebe, David J.
2013-01-01
The utilization of 3D, physiologically relevant in vitro cancer models to investigate complex interactions between tumor and stroma has been increasing. Prior work has generally focused on the cancer cells and, the role of fibroblast culture conditions on tumor-stromal cell interactions is still largely unknown. Here, we focus on the stroma by comparing functional behaviors of human mammary fibroblasts (HMFs) cultured in 2D and 3D and their effects on the invasive progression of breast cancer cells (MCF10DCIS.com). We identified increased levels of several paracrine factors from HMFs cultured in 3D conditions that drive the invasive transition. Using a microscale co-culture model with improved compartmentalization and sensitivity, we demonstrated that HMFs cultured in 3D intensify the promotion of the invasive progression through the HGF/c-Met interaction. This study highlights the importance of the 3D stromal microenvironment in the development of multiple cell type in vitro cancer models. PMID:24124550
Multi-scale Model of Residual Strength of 2D Plain Weave C/SiC Composites in Oxidation Atmosphere
NASA Astrophysics Data System (ADS)
Chen, Xihui; Sun, Zhigang; Sun, Jianfen; Song, Yingdong
2016-06-01
Multi-scale models play an important role in capturing the nonlinear response of woven carbon fiber reinforced ceramic matrix composites. In plain weave carbon fiber/silicon carbon (C/SiC) composites, the carbon fibers and interphases will be oxidized at elevated temperature and the strength of the composite will be degraded when oxygen enters micro-cracks formed in the as-produced parts due to the mismatch in thermal properties between constituents. As a result of the oxidation on fiber surface, fiber shows a notch-like morphology. In this paper, the change rule of fiber notch depth is fitted by circular function. And a multi-scale model based upon the change rule of fiber notch depth is developed to simulate the residual strength and post-oxidation stress-strain curves of the composite. The multi-scale model is able to accurately predict the residual strength and post-oxidation stress-strain curves of the composite. Besides, the simulated residual strength and post-oxidation stress-strain curves of 2D plain weave C/SiC composites in oxidation atmosphere show good agreements with experimental results. Furthermore, the oxidation time and temperature of the composite are investigated to show their influences upon the residual strength and post-oxidation stress-strain curves of plain weave C/SiC composites.
NASA Astrophysics Data System (ADS)
Martowicz, A.; Ruzzene, M.; Staszewski, W. J.; Rimoli, J. J.; Uhl, T.
2014-03-01
The work deals with the reduction of numerical dispersion in simulations of wave propagation in solids. The phenomenon of numerical dispersion naturally results from time and spatial discretization present in a numerical model of mechanical continuum. Although discretization itself makes possible to model wave propagation in structures with complicated geometries and made of different materials, it inevitably causes simulation errors when improper time and length scales are chosen for the simulations domains. Therefore, by definition, any characteristic parameter for spatial and time resolution must create limitations on maximal wavenumber and frequency for a numerical model. It should be however noted that expected increase of the model quality and its functionality in terms of affordable wavenumbers, frequencies and speeds should not be achieved merely by denser mesh and reduced time integration step. The computational cost would be simply unacceptable. The authors present a nonlocal finite difference scheme with the coefficients calculated applying a Fourier series, which allows for considerable reduction of numerical dispersion. There are presented the results of analyses for 2D models, with isotropic and anisotropic materials, fulfilling the planar stress state. Reduced numerical dispersion is shown in the dispersion surfaces for longitudinal and shear waves propagating for different directions with respect to the mesh orientation and without dramatic increase of required number of nonlocal interactions. A case with the propagation of longitudinal wave in composite material is studied with given referential solution of the initial value problem for verification of the time-domain outcomes. The work gives a perspective of modeling of any type of real material dispersion according to measurements and with assumed accuracy.
Dickschen, Kristin; Willmann, Stefan; Thelen, Kirstin; Lippert, Jörg; Hempel, Georg; Eissing, Thomas
2012-01-01
Tamoxifen is a first-line endocrine agent in the mechanism-based treatment of estrogen receptor positive (ER+) mammary carcinoma and applied to breast cancer patients all over the world. Endoxifen is a secondary and highly active metabolite of tamoxifen that is formed among others by the polymorphic cytochrome P450 2D6 (CYP2D6). It is widely accepted that CYP2D6 poor metabolizers exert a pronounced decrease in endoxifen steady-state plasma concentrations compared to CYP2D6 extensive metabolizers. Nevertheless, an in-depth understanding of the chain of cause and effect between CYP2D6 genotype, endoxifen steady-state plasma concentration, and subsequent tamoxifen treatment benefit still remains to be evolved. In this study, physiologically based pharmacokinetic (PBPK)-modeling was applied to mechanistically investigate the impact of CYP2D6 phenotype on endoxifen formation in female breast cancer patients undergoing tamoxifen therapy. A PBPK-model of tamoxifen and its pharmacologically important metabolites N-desmethyltamoxifen (NDM-TAM), 4-hydroxytamoxifen (4-OH-TAM), and endoxifen was developed and validated. This model is able to simulate the pharmacokinetics (PK) after single and repeated oral tamoxifen doses in female breast cancer patients in dependence of the CYP2D6 phenotype. A detailed model-based analysis of the mass balance offered support for a recent hypothesis stating a more prominent role for endoxifen formation from 4-OH-TAM. In the future this model provides a good basis to further investigate the linkage of PK, mode of action, and treatment outcome in dependence of factors such as phenotype, ethnicity, or co-treatment with CYP2D6 inhibitors. PMID:22661948
NASA Astrophysics Data System (ADS)
Bignardi, S.; Mantovani, A.; Abu Zeid, N.
2016-08-01
OpenHVSR is a computer program developed in the Matlab environment, designed for the simultaneous modeling and inversion of large Horizontal-to-Vertical Spectral Ratio (HVSR or H/V) datasets in order to construct 2D/3D subsurface models (topography included). The program is designed to provide a high level of interactive experience to the user and still to be of intuitive use. It implements several effective and established tools already present in the code ModelHVSR by Herak (2008), and many novel features such as: -confidence evaluation on lateral heterogeneity -evaluation of frequency dependent single parameter impact on the misfit function -relaxation of Vp/Vs bounds to allow for water table inclusion -a new cost function formulation which include a slope dependent term for fast matching of peaks, which greatly enhances convergence in case of low quality HVSR curves inversion -capability for the user of editing the subsurface model at any time during the inversion and capability to test the changes before acceptance. In what follows, we shall present many features of the program and we shall show its capabilities on both simulated and real data. We aim to supply a powerful tool to the scientific and professional community capable of handling large sets of HSVR curves, to retrieve the most from their microtremor data within a reduced amount of time and allowing the experienced scientist the necessary flexibility to integrate into the model their own geological knowledge of the sites under investigation. This is especially desirable now that microtremor testing has become routinely used. After testing the code over different datasets, both simulated and real, we finally decided to make it available in an open source format. The program is available by contacting the authors.
NASA Astrophysics Data System (ADS)
Croissant, T.; Lague, D.; Davy, P.
2014-12-01
Numerical models of floodplain dynamics often use a simplified 1D description of flow hydraulics and sediment transport that cannot fully account for differential friction between vegetated banks and low friction in the main channel. Key parameters of such models are the friction coefficient and the description of the channel bathymetry which strongly influence predicted water depth and velocity, and therefore sediment transport capacity. In this study, we use a newly developed 2D hydrodynamic model, Floodos, whose efficiency is a major advantage for exploring channel morphodynamics from a flood event to millennial time scales. We evaluate the quality of Floodos predictions in the Whataroa river, New Zealand and assess the effect of a spatially distributed friction coefficient (SDFC) on long term sediment transport. Predictions from the model are compared to water depth data from a gauging station located on the Whataroa River in Southern Alps, New Zealand. The Digital Elevation Model (DEM) of the 2.5 km long studied reach is derived from a 2010 LiDAR acquisition with 2 m resolution and an interpolated bathymetry. The several large floods experienced by this river during 2010 allow us to access water depth for a wide range of possible river discharges and to retrieve the scaling between these two parameters. The high resolution DEM used has a non-negligible part of submerged bathymetry that airborne LiDAR was not able to capture. Bathymetry can be reconstructed by interpolation methods that introduce several uncertainties concerning water depth predictions. We address these uncertainties inherent to the interpolation using a simplified channel with a geometry (slope and width) similar to the Whataroa river. We then explore the effect of a SDFC on velocity pattern, water depth and sediment transport capacity and discuss its relevance on long term predictions of sediment transport and channel morphodynamics.
The Break-up and Drifting of the Continental Plates in 2D Models of Convecting Mantle
NASA Astrophysics Data System (ADS)
Dal Zilio, L.; Faccenda, M.; Capitanio, F. A.
2014-12-01
Since the early theory of Wegener, the break-up and drift of continents have been controversial and hotly debated topics. To assist the interpretation of the break-up and drift mechanisms and its relation with mantle circulation patterns, we carried out a 2D numerical modelling of the dynamics of these processes. Different regimes of upper plate deformation are studied as consequence of stress coupling with convection patterns. Subduction of the oceanic plate and induced mantle flow propagate basal tractions to the upper plate. This mantle drag forces (FMD) can be subdivided in two types: (1) active mantle drag occurring when the flow drives plate motion (FAD), and (2) passive mantle drag (FPD), when the asthenosphere resists plate motion. The active traction generated by the convective cell is counterbalanced by passive mantle viscous drag away from it and therefore tension is generated within the continental plate. The shear stress profiles indicate that break-up conditions are met where the gradient of the basal shear stress is maximised, however the break-up location varies largely depending on the convection style primarily controlled by slab stagnation on the transition zone, avalanching through or subduction in the lower mantle. We found good correspondence between our models and the evolution of convergent margins on Earth, giving precious insights into the break-up and drifting mechanisms of some continental plates, such as the North and South American plates, Calabria and the Japan Arc.
Floodplain mapping via 1D and quasi-2D numerical models in the valley of Thessaly, Greece
NASA Astrophysics Data System (ADS)
Oikonomou, Athanasios; Dimitriadis, Panayiotis; Koukouvinos, Antonis; Tegos, Aristoteles; Pagana, Vasiliki; Panagopoulos, Panayiotis-Dionisios; Mamassis, Nikolaos; Koutsoyiannis, Demetris
2013-04-01
The European Union Floods Directive defines a flood as 'a covering by water of land not normally covered by water'. Human activities, such as agriculture, urban development, industry and tourism, contribute to an increase in the likelihood and adverse impacts of flood events. The study of the hydraulic behaviour of a river is important in flood risk management. Here, we investigate the behaviour of three hydraulic models, with different theoretical frameworks, in a real case scenario. The area is located in the Penios river basin, in the plain of Thessaly (Greece). The three models used are the one-dimensional HEC-RAS and the quasi two-dimensional LISFLOOD-FP and FLO-2D which are compared to each other, in terms of simulated maximum water depth as well as maximum flow velocity, and to a real flood event. Moreover, a sensitivity analysis is performed to determine how each simulation is affected by the river and floodplain roughness coefficient, in terms of flood inundation.
NASA Astrophysics Data System (ADS)
Wang, Enjiang; Liu, Yang; Sen, Mrinal K.
2016-07-01
The 2D acoustic wave equation is commonly solved numerically by finite-difference (FD) methods in which the accuracy of solution is significantly affected by the FD stencils. The commonly used cross stencil can reach either only second-order accuracy for space domain dispersion-relation-based FD method or (2 M)th-order accuracy along eight specific propagation directions for time-space domain dispersion-relation-based FD method, if the conventional (2 M)th-order spatial FD and second-order temporal FD are used to discretize the equation. One other newly developed rhombus stencil can reach arbitrary even-order accuracy. However, this stencil adds significantly computational cost when the operator length is large. To achieve a balance between the solution accuracy and efficiency, we develop a new FD stencil to solve the 2D acoustic wave equation. This stencil is a combination of the cross stencil and rhombus stencil. A cross stencil with an operator length parameter M is used to approximate the spatial partial derivatives while a rhombus stencil with an operator length parameter N together with the conventional 2nd-order temporal FD is employed in approximating the temporal partial derivatives. Using this stencil, a new FD sc