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Sample records for 2d vlasov solver

  1. A scalable 2-D parallel sparse solver

    SciTech Connect

    Kothari, S.C.; Mitra, S.

    1995-12-01

    Scalability beyond a small number of processors, typically 32 or less, is known to be a problem for existing parallel general sparse (PGS) direct solvers. This paper presents a parallel general sparse PGS direct solver for general sparse linear systems on distributed memory machines. The algorithm is based on the well-known sequential sparse algorithm Y12M. To achieve efficient parallelization, a 2-D scattered decomposition of the sparse matrix is used. The proposed algorithm is more scalable than existing parallel sparse direct solvers. Its scalability is evaluated on a 256 processor nCUBE2s machine using Boeing/Harwell benchmark matrices.

  2. 2d PDE Linear Symmetric Matrix Solver

    1983-10-01

    ICCG2 (Incomplete Cholesky factorized Conjugate Gradient algorithm for 2d symmetric problems) was developed to solve a linear symmetric matrix system arising from a 9-point discretization of two-dimensional elliptic and parabolic partial differential equations found in plasma physics applications, such as resistive MHD, spatial diffusive transport, and phase space transport (Fokker-Planck equation) problems. These problems share the common feature of being stiff and requiring implicit solution techniques. When these parabolic or elliptic PDE''s are discretized withmore » finite-difference or finite-element methods,the resulting matrix system is frequently of block-tridiagonal form. To use ICCG2, the discretization of the two-dimensional partial differential equation and its boundary conditions must result in a block-tridiagonal supermatrix composed of elementary tridiagonal matrices. The incomplete Cholesky conjugate gradient algorithm is used to solve the linear symmetric matrix equation. Loops are arranged to vectorize on the Cray1 with the CFT compiler, wherever possible. Recursive loops, which cannot be vectorized, are written for optimum scalar speed. For matrices lacking symmetry, ILUCG2 should be used. Similar methods in three dimensions are available in ICCG3 and ILUCG3. A general source containing extensions and macros, which must be processed by a pre-compiler to obtain the standard FORTRAN source, is provided along with the standard FORTRAN source because it is believed to be more readable. The pre-compiler is not included, but pre-compilation may be performed by a text editor as described in the UCRL-88746 Preprint.« less

  3. 2d PDE Linear Asymmetric Matrix Solver

    1983-10-01

    ILUCG2 (Incomplete LU factorized Conjugate Gradient algorithm for 2d problems) was developed to solve a linear asymmetric matrix system arising from a 9-point discretization of two-dimensional elliptic and parabolic partial differential equations found in plasma physics applications, such as plasma diffusion, equilibria, and phase space transport (Fokker-Planck equation) problems. These equations share the common feature of being stiff and requiring implicit solution techniques. When these parabolic or elliptic PDE''s are discretized with finite-difference or finite-elementmore » methods, the resulting matrix system is frequently of block-tridiagonal form. To use ILUCG2, the discretization of the two-dimensional partial differential equation and its boundary conditions must result in a block-tridiagonal supermatrix composed of elementary tridiagonal matrices. A generalization of the incomplete Cholesky conjugate gradient algorithm is used to solve the matrix equation. Loops are arranged to vectorize on the Cray1 with the CFT compiler, wherever possible. Recursive loops, which cannot be vectorized, are written for optimum scalar speed. For problems having a symmetric matrix ICCG2 should be used since it runs up to four times faster and uses approximately 30% less storage. Similar methods in three dimensions are available in ICCG3 and ILUCG3. A general source, containing extensions and macros, which must be processed by a pre-compiler to obtain the standard FORTRAN source, is provided along with the standard FORTRAN source because it is believed to be more readable. The pre-compiler is not included, but pre-compilation may be performed by a text editor as described in the UCRL-88746 Preprint.« less

  4. A strategy to suppress recurrence in grid-based Vlasov solvers

    NASA Astrophysics Data System (ADS)

    Einkemmer, Lukas; Ostermann, Alexander

    2014-07-01

    In this paper we propose a strategy to suppress the recurrence effect present in grid-based Vlasov solvers. This method is formulated by introducing a cutoff frequency in Fourier space. Since this cutoff only has to be performed after a number of time steps, the scheme can be implemented efficiently and can relatively easily be incorporated into existing Vlasov solvers. Furthermore, the scheme proposed retains the advantage of grid-based methods in that high accuracy can be achieved. This is due to the fact that in contrast to the scheme proposed by Abbasi et al. no statistical noise is introduced into the simulation. We will illustrate the utility of the method proposed by performing a number of numerical simulations, including the plasma echo phenomenon, using a discontinuous Galerkin approximation in space and a Strang splitting based time integration. Contribution to the Topical Issue "Theory and Applications of the Vlasov Equation", edited by Francesco Pegoraro, Francesco Califano, Giovanni Manfredi and Philip J. Morrison.

  5. Ion acoustic wave collapse via two-ion wave decay: 2D Vlasov simulation and theory

    NASA Astrophysics Data System (ADS)

    Chapman, Thomas; Berger, Richard; Banks, Jeffrey; Brunner, Stephan

    2015-11-01

    The decay of ion acoustic waves (IAWs) via two-ion wave decay may transfer energy from the electric field of the IAWs to the particles, resulting in a significant heating of resonant particles. This process has previously been shown in numerical simulations to decrease the plasma reflectivity due to stimulated Brillouin scattering. Two-ion wave decay is a fundamental property of ion acoustic waves that occurs over most if not all of the parameter space of relevance to inertial confinement fusion experiments, and can lead to a sudden collapse of IAWs. The treatment of all species kinetically, and in particular the electrons, is required to describe the decay process correctly. We present fully kinetic 2D+2V Vlasov simulations of IAWs undergoing decay to a highly nonlinear turbulent state using the code LOKI. The scaling of the decay rate with characteristic plasma parameters and wave amplitude is shown. A new theory describing two-ion wave decay in 2D, that incorporates key kinetic properties of the electrons, is presented and used to explain quantitatively for the first time the observed decay of IAWs. Work performed under auspices of U.S. DoE by LLNL, Contract DE-AC52-07NA2734. Funded by LDRD 15-ERD-038 and supported by LLNL Grand Challenge allocation.

  6. Vlasov Fluid stability of a 2-D plasma with a linear magnetic field null

    SciTech Connect

    Kim, J.S.

    1984-01-01

    Vlasov Fluid stability of a 2-dimensional plasma near an O type magnetic null is investigated. Specifically, an elongated Z-pinch is considered, and applied to Field Reversed Configurations at Los Alamos National Laboratory by making a cylindrical approximation of the compact torus. The orbits near an elliptical O type null are found to be very complicated; the orbits are large and some are stochastic. The kinetic corrections to magnetohydrodynamics (MHD) are investigated by evaluating the expectation values of the growth rates of a Vlasov Fluid dispersion functional by using a set of trial functions based on ideal MHD. The dispersion functional involves fluid parts and orbit dependent parts. The latter involves phase integral of two time correlations. The phase integral is replaced by the time integral both for the regular and for the stochastic orbits. Two trial functions are used; one has a large displacement near the null and the other away from the null.

  7. Efficient simulation of pitch angle collisions in a 2+2-D Eulerian Vlasov code

    NASA Astrophysics Data System (ADS)

    Banks, Jeff; Berger, R.; Brunner, S.; Tran, T.

    2014-10-01

    Here we discuss pitch angle scattering collisions in the context of the Eulerian-based kinetic code LOKI that evolves the Vlasov-Poisson system in 2+2-dimensional phase space. The collision operator is discretized using 4th order accurate conservative finite-differencing. The treatment of the Vlasov operator in phase-space uses an approach based on a minimally diffuse, fourth-order-accurate discretization (Banks and Hittinger, IEEE T. Plasma Sci. 39, 2198). The overall scheme is therefore discretely conservative and controls unphysical oscillations. Some details of the numerical scheme will be presented, and the implementation on modern highly concurrent parallel computers will be discussed. We will present results of collisional effects on linear and non-linear Landau damping of electron plasma waves (EPWs). In addition we will present initial results showing the effect of collisions on the evolution of EPWs in two space dimensions. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344 and funded by the LDRD program at LLNL under project tracking code 12-ERD-061.

  8. ColDICE: A parallel Vlasov-Poisson solver using moving adaptive simplicial tessellation

    NASA Astrophysics Data System (ADS)

    Sousbie, Thierry; Colombi, Stéphane

    2016-09-01

    Resolving numerically Vlasov-Poisson equations for initially cold systems can be reduced to following the evolution of a three-dimensional sheet evolving in six-dimensional phase-space. We describe a public parallel numerical algorithm consisting in representing the phase-space sheet with a conforming, self-adaptive simplicial tessellation of which the vertices follow the Lagrangian equations of motion. The algorithm is implemented both in six- and four-dimensional phase-space. Refinement of the tessellation mesh is performed using the bisection method and a local representation of the phase-space sheet at second order relying on additional tracers created when needed at runtime. In order to preserve in the best way the Hamiltonian nature of the system, refinement is anisotropic and constrained by measurements of local Poincaré invariants. Resolution of Poisson equation is performed using the fast Fourier method on a regular rectangular grid, similarly to particle in cells codes. To compute the density projected onto this grid, the intersection of the tessellation and the grid is calculated using the method of Franklin and Kankanhalli [65-67] generalised to linear order. As preliminary tests of the code, we study in four dimensional phase-space the evolution of an initially small patch in a chaotic potential and the cosmological collapse of a fluctuation composed of two sinusoidal waves. We also perform a "warm" dark matter simulation in six-dimensional phase-space that we use to check the parallel scaling of the code.

  9. Assessment of the 2D MOC solver in MPACT: Michigan parallel characteristics transport code

    SciTech Connect

    Collins, B.; Kochunas, B.; Downar, T.

    2013-07-01

    MPACT (Michigan Parallel Characteristics Transport Code) is a new reactor analysis tool being developed by researchers at the University of Michigan as an advanced pin-resolved transport capability within VERA (Virtual Environment for Reactor Analysis). VERA is the end-user reactor simulation tool being developed by the Consortium for the Advanced Simulation of Light Water Reactors (CASL). The MPACT development project is itself unique for the way it is changing how students perform research to achieve the instructional and research goals of an academic institution, while providing immediate value to the industry. One of the major computational pieces in MPACT is the 2D MOC solver. It is critical that the 2D MOC solver provide an efficient, accurate, and robust solution over a broad range of reactor operating conditions. The C5G7 benchmark is first used to test the accuracy of the method with a fixed set of cross-sections. The VERA Core Physics Progression Problems are then used to compare the accuracy of both the 2D transport solver and also the cross-section treatments. (authors)

  10. Methods for Solving Gas Damping Problems in Perforated Microstructures Using a 2D Finite-Element Solver

    PubMed Central

    Veijola, Timo; Råback, Peter

    2007-01-01

    We present a straightforward method to solve gas damping problems for perforated structures in two dimensions (2D) utilising a Perforation Profile Reynolds (PPR) solver. The PPR equation is an extended Reynolds equation that includes additional terms modelling the leakage flow through the perforations, and variable diffusivity and compressibility profiles. The solution method consists of two phases: 1) determination of the specific admittance profile and relative diffusivity (and relative compressibility) profiles due to the perforation, and 2) solution of the PPR equation with a FEM solver in 2D. Rarefied gas corrections in the slip-flow region are also included. Analytic profiles for circular and square holes with slip conditions are presented in the paper. To verify the method, square perforated dampers with 16–64 holes were simulated with a three-dimensional (3D) Navier-Stokes solver, a homogenised extended Reynolds solver, and a 2D PPR solver. Cases for both translational (in normal to the surfaces) and torsional motion were simulated. The presented method extends the region of accurate simulation of perforated structures to cases where the homogenisation method is inaccurate and the full 3D Navier-Stokes simulation is too time-consuming.

  11. Comparison of different nonlinear solvers for 2D time-implicit stellar hydrodynamics

    NASA Astrophysics Data System (ADS)

    Viallet, M.; Baraffe, I.; Walder, R.

    2013-07-01

    Time-implicit schemes are attractive since they allow numerical time steps that are much larger than those permitted by the Courant-Friedrich-Lewy criterion characterizing time-explicit methods. This advantage comes, however, at a cost: the solution of a system of nonlinear equations is required at each time step. In this work, the nonlinear system results from the discretization of the hydrodynamical equations with the Crank-Nicholson scheme. We compare the cost of different methods, based on Newton-Raphson iterations, to solve this nonlinear system, and benchmark their performances against time-explicit schemes. Since our general scientific objective is to model stellar interiors, we use as test cases two realistic models for the convective envelope of a red giant and a young Sun. Focusing on 2D simulations, we show that the best performances are obtained with the quasi-Newton method proposed by Broyden. Another important concern is the accuracy of implicit calculations. Based on the study of an idealized problem, namely the advection of a single vortex by a uniform flow, we show that there are two aspects: i) the nonlinear solver has to be accurate enough to resolve the truncation error of the numerical discretization; and ii) the time step has be small enough to resolve the advection of eddies. We show that with these two conditions fulfilled, our implicit methods exhibit similar accuracy to time-explicit schemes, which have lower values for the time step and higher computational costs. Finally, we discuss in the conclusion the applicability of these methods to fully implicit 3D calculations.

  12. Proteus-MOC: A 3D deterministic solver incorporating 2D method of characteristics

    SciTech Connect

    Marin-Lafleche, A.; Smith, M. A.; Lee, C.

    2013-07-01

    A new transport solution methodology was developed by combining the two-dimensional method of characteristics with the discontinuous Galerkin method for the treatment of the axial variable. The method, which can be applied to arbitrary extruded geometries, was implemented in PROTEUS-MOC and includes parallelization in group, angle, plane, and space using a top level GMRES linear algebra solver. Verification tests were performed to show accuracy and stability of the method with the increased number of angular directions and mesh elements. Good scalability with parallelism in angle and axial planes is displayed. (authors)

  13. Vlasov simulation of 2D Modulational Instability of Ion Acoustic Waves and Prospects for Modeling such instabilities in Laser Propagation Codes

    NASA Astrophysics Data System (ADS)

    Berger, Richard; Chapman, T.; Banks, J. W.; Brunner, S.

    2015-11-01

    We present 2D+2V Vlasov simulations of Ion Acoustic waves (IAWs) driven by an external traveling-wave potential, ϕ0 (x , t) , with frequency, ω, and wavenumber, k, obeying the kinetic dispersion relation. Both electrons and ions are treated kinetically. Simulations with ϕ0 (x , t) , localized transverse to the propagation direction, model IAWs driven in a laser speckle. The waves bow with a positive or negative curvature of the wave fronts that depends on the sign of the nonlinear frequency shift ΔωNL , which is in turn determined by the magnitude of ZTe /Ti where Z is the charge state and Te , i is the electron, ion temperature. These kinetic effects result can cause modulational and self-focusing instabilities that transfer wave energy to kinetic energy. Linear dispersion properties of IAWs are used in laser propagation codes that predict the amount of light reflected by stimulated Brillouin scattering. At high enough amplitudes, the linear dispersion is invalid and these kinetic effects should be incorporated. Including the spatial and time scales of these instabilities is computationally prohibitive. We report progress including kinetic models in laser propagation codes. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344 and funded by the Laboratory Research and Development Program at LLNL under project tracking code 15.

  14. 2D divertor heat flux distribution using a 3D heat conduction solver in National Spherical Torus Experiment.

    PubMed

    Gan, K F; Ahn, J-W; Park, J-W; Maingi, R; McLean, A G; Gray, T K; Gong, X; Zhang, X D

    2013-02-01

    The divertor heat flux footprint in tokamaks is often observed to be non-axisymmetric due to intrinsic error fields, applied 3D magnetic fields or during transients such as edge localized modes. Typically, only 1D radial heat flux profiles are analyzed; however, analysis of the full 2D divertor measurements provides opportunities to study the asymmetric nature of the deposited heat flux. To accomplish this an improved 3D Fourier analysis method has been successfully applied in a heat conduction solver (TACO) to determine the 2D heat flux distribution at the lower divertor surface in the National Spherical Torus Experiment (NSTX) tokamak. This advance enables study of helical heat deposition onto the divertor. In order to account for heat transmission through poorly adhered surface layers on the divertor plate, a heat transmission coefficient, defined as the surface layer thermal conductivity divided by the thickness of the layer, was introduced to the solution of heat conduction equation. This coefficient is denoted as α and a range of values were tested in the model to ensure a reliable heat flux calculation until a specific value of α led to the constant total deposited energy in the numerical solution after the end of discharge. A comparison between 1D heat flux profiles from TACO and from a 2D heat flux calculation code, THEODOR, shows good agreement. Advantages of 2D heat flux distribution over the conventional 1D heat flux profile are also discussed, and examples of 2D data analysis in the study of striated heat deposition pattern as well as the toroidal degree of asymmetry of peak heat flux and heat flux width are demonstrated. PMID:23464209

  15. 2D divertor heat flux distribution using a 3D heat conduction solver in National Spherical Torus Experiment

    NASA Astrophysics Data System (ADS)

    Gan, K. F.; Ahn, J.-W.; Park, J.-W.; Maingi, R.; McLean, A. G.; Gray, T. K.; Gong, X.; Zhang, X. D.

    2013-02-01

    The divertor heat flux footprint in tokamaks is often observed to be non-axisymmetric due to intrinsic error fields, applied 3D magnetic fields or during transients such as edge localized modes. Typically, only 1D radial heat flux profiles are analyzed; however, analysis of the full 2D divertor measurements provides opportunities to study the asymmetric nature of the deposited heat flux. To accomplish this an improved 3D Fourier analysis method has been successfully applied in a heat conduction solver (TACO) to determine the 2D heat flux distribution at the lower divertor surface in the National Spherical Torus Experiment (NSTX) tokamak. This advance enables study of helical heat deposition onto the divertor. In order to account for heat transmission through poorly adhered surface layers on the divertor plate, a heat transmission coefficient, defined as the surface layer thermal conductivity divided by the thickness of the layer, was introduced to the solution of heat conduction equation. This coefficient is denoted as α and a range of values were tested in the model to ensure a reliable heat flux calculation until a specific value of α led to the constant total deposited energy in the numerical solution after the end of discharge. A comparison between 1D heat flux profiles from TACO and from a 2D heat flux calculation code, THEODOR, shows good agreement. Advantages of 2D heat flux distribution over the conventional 1D heat flux profile are also discussed, and examples of 2D data analysis in the study of striated heat deposition pattern as well as the toroidal degree of asymmetry of peak heat flux and heat flux width are demonstrated.

  16. Advanced Nodal P3/SP3 Axial Transport Solvers for the MPACT 2D/1D Scheme

    SciTech Connect

    Stimpson, Shane G; Collins, Benjamin S

    2015-01-01

    As part of its initiative to provide multiphysics simulations of nuclear reactor cores, the Consortium for Advanced Simulation of Light Water Reactors (CASL) is developing the Virtual Environment for Reactor Applications Core Simulator (VERA-CS). The MPACT code, which is the primary neutron transport solver of VERA-CS, employs the two-dimensional/one-dimensional (2D/1D) method to solve 3-dimensional neutron transport problems and provide sub-pin-level resolution of the power distribution. While 2D method of characteristics is used to solve for the transport effects within each plane, 1D-nodal methods are used axially. There have been extensive studies of the 2D/1D method with a variety nodal methods, and the P3/SP3 solver has proved to be an effective method of providing higher-fidelity solutions while maintaining a low computational burden.The current implementation in MPACT wraps a one-node nodal expansion method (NEM) kernel for each moment, iterating between them and performing multiple sweeps to resolve flux distributions. However, it has been observed that this approach is more sensitive to convergence problems. This paper documents the theory and application two new nodal P3/SP3 approaches to be used within the 2D/1D method in MPACT. These two approaches aim to provide enhanced stability compared with the pre-existing one-node approach. Results from the HY-NEM-SP3 solver show that the accuracy is consistent with the one-node formulations and provides improved convergence for some problems; but the solver has issues with cases in thin planes. Although the 2N-SENM-SP3 solver is still under development, it is intended to resolve the issues with HY-NEM-SP3 but it will incur some additional computational burden by necessitating an additional 1D-CMFD-P3 solver to generate the second moment cell-averaged scalar flux.

  17. Mesh type tradeoffs in 2D hydrodynamic modeling of flooding with a Godunov-based flow solver

    NASA Astrophysics Data System (ADS)

    Kim, Byunghyun; Sanders, Brett F.; Schubert, Jochen E.; Famiglietti, James S.

    2014-06-01

    The effect of mesh type on the accuracy and computational demands of a two-dimensional Godunov-type flood inundation model is critically examined. Cartesian grids, constrained and unconstrained triangular grids, constrained quadrilateral grids, and mixed meshes are considered, with and without local time stepping (LTS), to determine the approach that maximizes computational efficiency defined as accuracy relative to computational effort. A mixed-mesh numerical scheme is introduced so all grids are processed by the same solver. Analysis focuses on a wide range of dam-break type test cases, where Godunov-type flood models have proven very successful. Results show that different mesh types excel under different circumstances. Cartesian grids are 2-3 times more efficient with relatively simple terrain features such as rectilinear channels that call for a uniform grid resolution, while unstructured grids are about twice as efficient in complex domains with irregular terrain features that call for localized refinements. The superior efficiency of locally refined, unstructured grids in complex terrain is attributable to LTS; the locally refined unstructured grid becomes less efficient using global time stepping. These results point to mesh-type tradeoffs that should be considered in flood modeling applications. A mixed mesh model formulation with LTS is recommended as a general purpose solver because the mesh type can be adapted to maximize computational efficiency.

  18. A marching in space and time (MAST) solver of the shallow water equations. Part II: The 2D model

    NASA Astrophysics Data System (ADS)

    Aricò, C.; Nasello, C.; Tucciarelli, T.

    2007-05-01

    A novel methodology for the solution of the 2D shallow water equations is proposed. The algorithm is based on a fractional step decomposition of the original system in (1) a convective prediction, (2) a convective correction, and (3) a diffusive correction step. The convective components are solved using a Marching in Space and Time (MAST) procedure, that solves a sequence of small ODEs systems, one for each computational cell, ordered according to the cell value of a scalar approximated potential. The scalar potential is sought after computing first the minimum of a functional via the solution of a large linear system and then refining locally the optimum search. Model results are compared with the experimental data of two laboratory tests and with the results of other simulations carried out for the same tests by different authors. A comparison with the analytical solution of the oblique jump test has been also considered. Numerical results of the proposed scheme are in good agreement with measured data, as well as with analytical and higher order approximation methods results. The growth of the CPU time versus the cell number is investigated successively refining the elements of an initially coarse mesh. The CPU specific time, per element and per time step, is found out to be almost constant and no evidence of Courant-Friedrichs-Levi (CFL) number limitation has been detected in all the numerical experiments.

  19. Studying fast wave propagation and absorption at any cyclotron harmonic using a 2D finite element area coordinates wave equation solver

    SciTech Connect

    Lerche, Ernesto; Van Eester, Dirk

    2011-12-23

    Fourier analysis in the poloidal direction is a standard ingredient in present-day 2D wave equation solvers describing radio frequency waves in hot tokamak plasmas. Although a powerful and elegant technique, Fourier analysis has the disadvantage that a large number of modes is needed to describe the field pattern on a magnetic surface if a short wavelength mode exists on any - even very small - subpart of the particle trajectory. The present paper examines the potential of a method that does not suffer from this drawback: a finite element technique relying on simple linear or cubic area base functions that are defined on irregular elementary surfaces of triangular shape. The wave equation is solved in its weak Galerkin variational form and for realistic 2D tokamak geometry, accounting for the toroidal curvature but assuming the toroidal angle is ignorable, allowing to study the wave pattern for each of the independent toroidal modes excited by the antenna individually.The locally uniform full hot plasma dielectric tensor to all orders in finite Larmor radius was adopted. As the main intended application is the study of fast wave behavior (heating and current drive) at arbitrary harmonics, the wave vector complex amplitude appearing in the dielectric tensor is determined through a local dispersion root evaluation. High frequency fast wave propagation and damping is provided as an illustration in view of possible application of this type of current drive in future high density reactor-like tokamaks.

  20. Adaptive Vlasov Simulations of Intense Beams

    SciTech Connect

    Sonnendruecker, Eric; Gutnic, Michael; Haefele, Matthieu; Lemaire, Jean-Louis

    2005-06-08

    Most simulations of intense particle beams are performed nowadays using Particle In Cell (PIC) techniques. Direct grid based Vlasov methods have also been used but mostly for 1D simulations as they become very costly in higher dimensions when using uniform phase space grids. We have recently introduced adaptive mesh refinement techniques that allow us to automatically concentrate the grid points at places where the distribution function is varying most. In this paper we shall introduce this technique and show how it can be used to improve the efficiency of grid based Vlasov solvers.

  1. Higher-order in time "quasi-unconditionally stable" ADI solvers for the compressible Navier-Stokes equations in 2D and 3D curvilinear domains

    NASA Astrophysics Data System (ADS)

    Bruno, Oscar P.; Cubillos, Max

    2016-02-01

    This paper introduces alternating-direction implicit (ADI) solvers of higher order of time-accuracy (orders two to six) for the compressible Navier-Stokes equations in two- and three-dimensional curvilinear domains. The higher-order accuracy in time results from 1) An application of the backward differentiation formulae time-stepping algorithm (BDF) in conjunction with 2) A BDF-like extrapolation technique for certain components of the nonlinear terms (which makes use of nonlinear solves unnecessary), as well as 3) A novel application of the Douglas-Gunn splitting (which greatly facilitates handling of boundary conditions while preserving higher-order accuracy in time). As suggested by our theoretical analysis of the algorithms for a variety of special cases, an extensive set of numerical experiments clearly indicate that all of the BDF-based ADI algorithms proposed in this paper are "quasi-unconditionally stable" in the following sense: each algorithm is stable for all couples (h , Δt)of spatial and temporal mesh sizes in a problem-dependent rectangular neighborhood of the form (0 ,Mh) × (0 ,Mt). In other words, for each fixed value of Δt below a certain threshold, the Navier-Stokes solvers presented in this paper are stable for arbitrarily small spatial mesh-sizes. The second-order formulation has further been rigorously shown to be unconditionally stable for linear hyperbolic and parabolic equations in two-dimensional space. Although implicit ADI solvers for the Navier-Stokes equations with nominal second-order of temporal accuracy have been proposed in the past, the algorithms presented in this paper are the first ADI-based Navier-Stokes solvers for which second-order or better accuracy has been verified in practice under non-trivial (non-periodic) boundary conditions.

  2. Vlasov simulation in multiple spatial dimensions

    SciTech Connect

    Rose, Harvey A.; Daughton, William

    2011-12-15

    A long-standing challenge encountered in modeling plasma dynamics is achieving practical Vlasov equation simulation in multiple spatial dimensions over large length and time scales. While direct multi-dimension Vlasov simulation methods using adaptive mesh methods [M. Gutnic et al., Comput. Phys. Commun. 164, 214 (2004)] have recently shown promising results in two dimensions (2D) [J. W. Banks et al., Phys. Plasmas 18, 052102 (2011); B. I. Cohen et al., November 10, 2010, http://meetings.aps.org/link/BAPS.2010.DPP.NP9.142], in this paper, we present an alternative, the Vlasov multi dimensional (VMD) model, that is specifically designed to take advantage of solution properties in regimes when plasma waves are confined to a narrow cone, as may be the case for stimulated Raman scatter in large optic f laser beams. Perpendicular grid spacing large compared to a Debye length is then possible without instability or loss of accuracy, enabling an order 10 decrease in required computational resources compared to standard particle in cell (PIC) methods in 2D, with another reduction of that order in 3D. Further advantage compared to PIC methods accrues in regimes where particle noise is an issue. VMD and PIC results in a 2D model of localized Langmuir waves are in qualitative agreement.

  3. Comparing the line broadened quasilinear model to Vlasov code

    SciTech Connect

    Ghantous, K.; Berk, H. L.; Gorelenkov, N. N.

    2014-03-15

    The Line Broadened Quasilinear (LBQ) model is revisited to study its predicted saturation level as compared with predictions of a Vlasov solver BOT [Lilley et al., Phys. Rev. Lett. 102, 195003 (2009) and M. Lilley, BOT Manual. The parametric dependencies of the model are modified to achieve more accuracy compared to the results of the Vlasov solver both in regards to a mode amplitude's time evolution to a saturated state and its final steady state amplitude in the parameter space of the model's applicability. However, the regions of stability as predicted by LBQ model and BOT are found to significantly differ from each other. The solutions of the BOT simulations are found to have a larger region of instability than the LBQ simulations.

  4. Comparing the line broadened quasilinear model to Vlasov code

    NASA Astrophysics Data System (ADS)

    Ghantous, K.; Berk, H. L.; Gorelenkov, N. N.

    2014-03-01

    The Line Broadened Quasilinear (LBQ) model is revisited to study its predicted saturation level as compared with predictions of a Vlasov solver BOT [Lilley et al., Phys. Rev. Lett. 102, 195003 (2009) and M. Lilley, BOT Manual. The parametric dependencies of the model are modified to achieve more accuracy compared to the results of the Vlasov solver both in regards to a mode amplitude's time evolution to a saturated state and its final steady state amplitude in the parameter space of the model's applicability. However, the regions of stability as predicted by LBQ model and BOT are found to significantly differ from each other. The solutions of the BOT simulations are found to have a larger region of instability than the LBQ simulations.

  5. Study of non-axisymmetric divertor footprints using 2-D IR and visible cameras and a 3-D heat conduction solver in NSTX

    NASA Astrophysics Data System (ADS)

    Ahn, J.-W.; Gan, K. F.; Scotti, F.; Lore, J. D.; Maingi, R.; Canik, J. M.; Gray, T. K.; McLean, A. G.; Roquemore, A. L.; Soukhanovskii, V. A.

    2013-07-01

    Toroidally non-axisymmetric divertor profiles during the 3-D field application and for ELMs are studied with simultaneous observation by a new wide angle visible camera and a high speed IR camera. A newly implemented 3-D heat conduction code, TACO, is used to obtain divertor heat flux. The wide angle camera data confirmed the previously reported result on the validity of vacuum field line tracing on the prediction of split strike point pattern by 3-D fields as well as the phase locking of ELM heat flux to the 3-D fields. TACO calculates the 2-D heat flux distribution allowing assessment of toroidal asymmetry of peak heat flux and heat flux width. The degree of asymmetry (ɛDA) is defined to quantify the asymmetric heat deposition on the divertor surface and is found to have a strong positive dependence on peak heat flux.

  6. The stability of freely-propagating ion acoustic waves in 2D systems

    NASA Astrophysics Data System (ADS)

    Chapman, Thomas; Berger, Richard; Banks, Jeffrey; Brunner, Stephan

    2014-10-01

    The stability of a freely-propagating ion acoustic wave (IAW) is a basic science problem that is made difficult by the need to resolve electron kinetic effects over a timescale that greatly exceeds the IAW period during numerical simulation. Recent results examining IAW stability using a 1D+1V Vlasov-Poisson solver indicate that instability is a fundamental property of IAWs that occurs over most if not all of the parameter space of relevance to ICF experiments. We present here new results addressing the fundamental question of IAW stability across a broad range of plasma conditions in a 2D+2V system using LOKI, ranging from a regime of relatively weak to a regime of relatively strong ion kinetic effects. Work performed under the auspices of the U.S. DOE by LLNL (DE-AC52-07NA27344) and funded by the LDRD Program at LLNL (12-ERD-061).

  7. Outflow boundary conditions for the Fourier transformed three-dimensional Vlasov Maxwell system

    NASA Astrophysics Data System (ADS)

    Eliasson, B.

    2007-08-01

    A problem with the solution of the Vlasov equation is its tendency to become filamented/oscillatory in velocity space, which in numerical simulations can give rise to unphysical oscillations and recurrence effects. We present a three-dimensional Vlasov-Maxwell solver (three spatial and velocity dimensions, plus time), in which the Vlasov equation is Fourier transformed in velocity space and the resulting equations solved numerically. By designing absorbing outflow boundary conditions in the Fourier transformed velocity space, the highest Fourier modes in velocity space are removed from the numerical solution. This introduces a dissipative effect in velocity space and the numerical recurrence effect is strongly reduced. The well-posedness of the boundary conditions is proved analytically, while the stability of the numerical implementation is assessed by long-time numerical simulations. Well-known wave-modes in magnetized plasmas are shown to be reproduced by the numerical scheme.

  8. Exact Vlasov Solutions of Kinetic Flux Ropes

    NASA Astrophysics Data System (ADS)

    Ng, C. S.

    2014-12-01

    Small-scale magnetic flux ropes have been observed to form within the diffusion region in three-dimensional (3D) kinetic simulations of magnetic reconnection. Such 3D structures and the 2D version of them (plasmoids, secondary islands) could have important dynamical effects on the reconnection physics itself. Small-scale flux ropes have also been observed within the interplanetary space. We have found exact time-steady solutions of kinetic flux ropes by generalizing exact solutions of 2D Bernstein-Greene-Kruskal (BGK) modes in a magnetized plasma with finite magnetic field strength [Ng, Bhattacharjee, and Skiff, Phys. Plasmas 13, 055903 (2006)] to cases with azimuthal magnetic fields so that these structures carry electric current as well as steady electric and magnetic fields. Such fully nonlinear solutions now satisfy exactly the Vlasov-Poisson-Ampere system of equations. Solutions like these could describe small-scale flux ropes observed in reconnection diffusion regions or in the interplanetary space. They are also exact nonlinear solutions that can be used to validate numerical schemes for kinetic simulations. This work is supported by a National Science Foundation grant PHY-1004357.

  9. Geometric integration of the Vlasov-Maxwell system with a variational particle-in-cell scheme

    NASA Astrophysics Data System (ADS)

    Squire, J.; Qin, H.; Tang, W. M.

    2012-08-01

    A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of discrete exterior calculus [Desbrun et al., e-print arXiv:math/0508341 (2005)], the field solver, interpolation scheme, and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law.

  10. Geometric integration of the Vlasov-Maxwell system with a variational particle-in-cell scheme

    SciTech Connect

    Squire, J.; Tang, W. M.; Qin, H.

    2012-08-15

    A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of discrete exterior calculus [Desbrun et al., e-print arXiv:math/0508341 (2005)], the field solver, interpolation scheme, and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law.

  11. Geometric Integration Of The Vlasov-Maxwell System With A Variational Particle-in-cell Scheme

    SciTech Connect

    J. Squire, H. Qin and W.M. Tang

    2012-03-27

    A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of Discrete Exterior Calculus [1], the field solver, interpolation scheme and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law.

  12. Neutral Vlasov kinetic theory of magnetized plasmas

    SciTech Connect

    Tronci, Cesare; Camporeale, Enrico

    2015-02-15

    The low-frequency limit of Maxwell equations is considered in the Maxwell-Vlasov system. This limit produces a neutral Vlasov system that captures essential features of plasma dynamics, while neglecting radiation effects. Euler-Poincaré reduction theory is used to show that the neutral Vlasov kinetic theory possesses a variational formulation in both Lagrangian and Eulerian coordinates. By construction, the new model recovers all collisionless neutral models employed in plasma simulations. Then, comparisons between the neutral Vlasov system and hybrid kinetic-fluid models are presented in the linear regime.

  13. Vlasov multi-dimensional model dispersion relation

    SciTech Connect

    Lushnikov, Pavel M.; Rose, Harvey A.; Silantyev, Denis A.; Vladimirova, Natalia

    2014-07-15

    A hybrid model of the Vlasov equation in multiple spatial dimension D > 1 [H. A. Rose and W. Daughton, Phys. Plasmas 18, 122109 (2011)], the Vlasov multi dimensional model (VMD), consists of standard Vlasov dynamics along a preferred direction, the z direction, and N flows. At each z, these flows are in the plane perpendicular to the z axis. They satisfy Eulerian-type hydrodynamics with coupling by self-consistent electric and magnetic fields. Every solution of the VMD is an exact solution of the original Vlasov equation. We show approximate convergence of the VMD Langmuir wave dispersion relation in thermal plasma to that of Vlasov-Landau as N increases. Departure from strict rotational invariance about the z axis for small perpendicular wavenumber Langmuir fluctuations in 3D goes to zero like θ{sup N}, where θ is the polar angle and flows are arranged uniformly over the azimuthal angle.

  14. A multi-dimensional Vlasov-Fokker-Planck code for arbitrarily anisotropic high-energy-density plasmas

    SciTech Connect

    Tzoufras, M.; Tableman, A.; Tsung, F. S.; Mori, W. B.; Bell, A. R.

    2013-05-15

    To study the kinetic physics of High-Energy-Density Laboratory Plasmas, we have developed the parallel relativistic 2D3P Vlasov-Fokker-Planck code Oshun. The numerical scheme uses a Cartesian mesh in configuration-space and incorporates a spherical harmonic expansion of the electron distribution function in momentum-space. The expansion is truncated such that the necessary angular resolution of the distribution function is retained for a given problem. Finite collisionality causes rapid decay of the high-order harmonics, thereby providing a natural truncation mechanism for the expansion. The code has both fully explicit and implicit field-solvers and employs a linearized Fokker-Planck collision operator. Oshun has been benchmarked against well-known problems, in the highly kinetic limit to model collisionless relativistic instabilities, and in the hydrodynamic limit to recover transport coefficients. The performance of the code, its applicability, and its limitations are discussed in the context of simple problems with relevance to inertial fusion energy.

  15. An approximation method for electrostatic Vlasov turbulence

    NASA Technical Reports Server (NTRS)

    Klimas, A. J.

    1979-01-01

    Electrostatic Vlasov turbulence in a bounded spatial region is considered. An iterative approximation method with a proof of convergence is constructed. The method is non-linear and applicable to strong turbulence.

  16. Geometric integration of the Vlasov-Maxwell system with a variational particle-in-cell scheme

    NASA Astrophysics Data System (ADS)

    Squire, Jonathan; Qin, Hong; Tang, William

    2012-10-01

    A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of Discrete Exterior Calculus [1], the field solver, interpolation scheme and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law. This work was supported by USDOE Contract DE-AC02-09CH11466.[4pt] [1] M. Desbrun, A. N. Hirani, M. Leok, and J. E. Marsden, (2005), arXiv:math/0508341

  17. Vlasov simulations of auroral processes

    NASA Astrophysics Data System (ADS)

    Gunell, H.; De Keyser, J. M.; Mann, I.

    2013-12-01

    In the auroral zone, electric fields that are parallel to the magnetic field are known to exist. These fields contribute to the acceleration of the electrons that cause the auroral emissions. Thus, parallel electric fields form an integral part of the auroral current circuit. Transverse electric fields at high altitude result in parallel electric fields as a consequence of the closure of the field aligned currents through the conducting ionosphere. The parallel electric fields can be supported by the magnetic mirror field, by electric double layers, or both. We present Vlasov simulations of the plasma on a magnetic field line from the equatorial magnetosphere to the auroral ionosphere. In the upward current region, we find that about two thirds of the total voltage is concentrated in a stationary double layer at an altitude of about one earth radius. In the downward current region, double layers form and move upward not reaching a steady state. For equal currents in the two regions, the voltage is significantly lower in the downward than in the upward current region. Waves on electron time scales and vortices in electron phase space form on the high potential side of the double layers in the downward current region. Finally, we discuss how laboratory experiments can be used to simulate auroral acceleration and present computer simulations of a possible a laboratory configuration. This work was supported by the Belgian Science Policy Office through the Solar-Terrestrial Centre of Excellence and by PRODEX/Cluster PEA 90316. This research was conducted using the resources of the High Performance Computing Center North (HPC2N) at Umeå University in Sweden.

  18. Higher-order Hamiltonian fluid reduction of Vlasov equation

    SciTech Connect

    Perin, M.; Chandre, C.; Morrison, P.J.; Tassi, E.

    2014-09-15

    From the Hamiltonian structure of the Vlasov equation, we build a Hamiltonian model for the first three moments of the Vlasov distribution function, namely, the density, the momentum density and the specific internal energy. We derive the Poisson bracket of this model from the Poisson bracket of the Vlasov equation, and we discuss the associated Casimir invariants.

  19. Cosmology in one dimension: Vlasov dynamics

    NASA Astrophysics Data System (ADS)

    Manfredi, Giovanni; Rouet, Jean-Louis; Miller, Bruce; Shiozawa, Yui

    2016-04-01

    Numerical simulations of self-gravitating systems are generally based on N -body codes, which solve the equations of motion of a large number of interacting particles. This approach suffers from poor statistical sampling in regions of low density. In contrast, Vlasov codes, by meshing the entire phase space, can reach higher accuracy irrespective of the density. Here, we perform one-dimensional Vlasov simulations of a long-standing cosmological problem, namely, the fractal properties of an expanding Einstein-de Sitter universe in Newtonian gravity. The N -body results are confirmed for high-density regions and extended to regions of low matter density, where the N -body approach usually fails.

  20. Amesos Solver Package

    2004-03-01

    Amesos is the Direct Sparse Solver Package in Trilinos. The goal of Amesos is to make AX=S as easy as it sounds, at least for direct methods. Amesos provides interfaces to a number of third party sparse direct solvers, including SuperLU, SuperLU MPI, DSCPACK, UMFPACK and KLU. Amesos provides a common object oriented interface to the best sparse direct solvers in the world. A sparse direct solver solves for x in Ax = b. wheremore » A is a matrix and x and b are vectors (or multi-vectors). A sparse direct solver flrst factors A into trinagular matrices L and U such that A = LU via gaussian elimination and then solves LU x = b. Switching amongst solvers in Amesos roquires a change to a single parameter. Yet, no solver needs to be linked it, unless it is used. All conversions between the matrices provided by the user and the format required by the underlying solver is performed by Amesos. As new sparse direct solvers are created, they will be incorporated into Amesos, allowing the user to simpty link with the new solver, change a single parameter in the calling sequence, and use the new solver. Amesos allows users to specify whether the matrix has changed. Amesos can be used anywhere that any sparse direct solver is needed.« less

  1. Amesos Solver Package

    SciTech Connect

    Stanley, Vendall S.; Heroux, Michael A.; Hoekstra, Robert J.; Sala, Marzio

    2004-03-01

    Amesos is the Direct Sparse Solver Package in Trilinos. The goal of Amesos is to make AX=S as easy as it sounds, at least for direct methods. Amesos provides interfaces to a number of third party sparse direct solvers, including SuperLU, SuperLU MPI, DSCPACK, UMFPACK and KLU. Amesos provides a common object oriented interface to the best sparse direct solvers in the world. A sparse direct solver solves for x in Ax = b. where A is a matrix and x and b are vectors (or multi-vectors). A sparse direct solver flrst factors A into trinagular matrices L and U such that A = LU via gaussian elimination and then solves LU x = b. Switching amongst solvers in Amesos roquires a change to a single parameter. Yet, no solver needs to be linked it, unless it is used. All conversions between the matrices provided by the user and the format required by the underlying solver is performed by Amesos. As new sparse direct solvers are created, they will be incorporated into Amesos, allowing the user to simpty link with the new solver, change a single parameter in the calling sequence, and use the new solver. Amesos allows users to specify whether the matrix has changed. Amesos can be used anywhere that any sparse direct solver is needed.

  2. Cosmology in one dimension: Vlasov dynamics.

    PubMed

    Manfredi, Giovanni; Rouet, Jean-Louis; Miller, Bruce; Shiozawa, Yui

    2016-04-01

    Numerical simulations of self-gravitating systems are generally based on N-body codes, which solve the equations of motion of a large number of interacting particles. This approach suffers from poor statistical sampling in regions of low density. In contrast, Vlasov codes, by meshing the entire phase space, can reach higher accuracy irrespective of the density. Here, we perform one-dimensional Vlasov simulations of a long-standing cosmological problem, namely, the fractal properties of an expanding Einstein-de Sitter universe in Newtonian gravity. The N-body results are confirmed for high-density regions and extended to regions of low matter density, where the N-body approach usually fails. PMID:27176297

  3. Helical relativistic electron beam Vlasov equilibria

    NASA Astrophysics Data System (ADS)

    Lai, H. M.

    1980-08-01

    Three existing helical relativistic electron beam models are discussed and compared. Both Yoshikawa's and Lawson's models are shown to be derivable from appropriate Vlasov equilibria. A new helical Vlasov equilibrium with energy spread is presented and studied. Unlike Auer's axial current model in which the allowance of an energy spread limits the total current in the relativistic beam case, the present model, with the addition of an azimuthal current, permits solutions with arbitrarily large current. On the other hand, like the model studied by Kan and Lai, the present model leads to nonhollowed-out beam solutions in which, the larger the beam current, the more force-free is the magnetic field configuration.

  4. Kinetic Vlasov simulations of collisionless magnetic reconnection

    SciTech Connect

    Schmitz, H.; Grauer, R.

    2006-09-15

    A fully kinetic Vlasov simulation of the Geospace Environment Modeling Magnetic Reconnection Challenge is presented. Good agreement is found with previous kinetic simulations using particle in cell (PIC) codes, confirming both the PIC and the Vlasov code. In the latter the complete distribution functions f{sub k} (k=i,e) are discretized on a numerical grid in phase space. In contrast to PIC simulations, the Vlasov code does not suffer from numerical noise and allows a more detailed investigation of the distribution functions. The role of the different contributions of Ohm's law are compared by calculating each of the terms from the moments of the f{sub k}. The important role of the off-diagonal elements of the electron pressure tensor could be confirmed. The inductive electric field at the X line is found to be dominated by the nongyrotropic electron pressure, while the bulk electron inertia is of minor importance. Detailed analysis of the electron distribution function within the diffusion region reveals the kinetic origin of the nongyrotropic terms.

  5. Noiseless Vlasov-Poisson simulations with linearly transformed particles

    SciTech Connect

    Pinto, Martin C.; Sonnendrucker, Eric; Friedman, Alex; Grote, David P.; Lund, Steve M.

    2014-06-25

    We introduce a deterministic discrete-particle simulation approach, the Linearly-Transformed Particle-In-Cell (LTPIC) method, that employs linear deformations of the particles to reduce the noise traditionally associated with particle schemes. Formally, transforming the particles is justified by local first order expansions of the characteristic flow in phase space. In practice the method amounts of using deformation matrices within the particle shape functions; these matrices are updated via local evaluations of the forward numerical flow. Because it is necessary to periodically remap the particles on a regular grid to avoid excessively deforming their shapes, the method can be seen as a development of Denavit's Forward Semi-Lagrangian (FSL) scheme (Denavit, 1972 [8]). However, it has recently been established (Campos Pinto, 2012 [20]) that the underlying Linearly-Transformed Particle scheme converges for abstract transport problems, with no need to remap the particles; deforming the particles can thus be seen as a way to significantly lower the remapping frequency needed in the FSL schemes, and hence the associated numerical diffusion. To couple the method with electrostatic field solvers, two specific charge deposition schemes are examined, and their performance compared with that of the standard deposition method. Finally, numerical 1d1v simulations involving benchmark test cases and halo formation in an initially mismatched thermal sheet beam demonstrate some advantages of our LTPIC scheme over the classical PIC and FSL methods. Lastly, benchmarked test cases also indicate that, for numerical choices involving similar computational effort, the LTPIC method is capable of accuracy comparable to or exceeding that of state-of-the-art, high-resolution Vlasov schemes.

  6. Noiseless Vlasov-Poisson simulations with linearly transformed particles

    DOE PAGESBeta

    Pinto, Martin C.; Sonnendrucker, Eric; Friedman, Alex; Grote, David P.; Lund, Steve M.

    2014-06-25

    We introduce a deterministic discrete-particle simulation approach, the Linearly-Transformed Particle-In-Cell (LTPIC) method, that employs linear deformations of the particles to reduce the noise traditionally associated with particle schemes. Formally, transforming the particles is justified by local first order expansions of the characteristic flow in phase space. In practice the method amounts of using deformation matrices within the particle shape functions; these matrices are updated via local evaluations of the forward numerical flow. Because it is necessary to periodically remap the particles on a regular grid to avoid excessively deforming their shapes, the method can be seen as a development ofmore » Denavit's Forward Semi-Lagrangian (FSL) scheme (Denavit, 1972 [8]). However, it has recently been established (Campos Pinto, 2012 [20]) that the underlying Linearly-Transformed Particle scheme converges for abstract transport problems, with no need to remap the particles; deforming the particles can thus be seen as a way to significantly lower the remapping frequency needed in the FSL schemes, and hence the associated numerical diffusion. To couple the method with electrostatic field solvers, two specific charge deposition schemes are examined, and their performance compared with that of the standard deposition method. Finally, numerical 1d1v simulations involving benchmark test cases and halo formation in an initially mismatched thermal sheet beam demonstrate some advantages of our LTPIC scheme over the classical PIC and FSL methods. Lastly, benchmarked test cases also indicate that, for numerical choices involving similar computational effort, the LTPIC method is capable of accuracy comparable to or exceeding that of state-of-the-art, high-resolution Vlasov schemes.« less

  7. Noiseless Vlasov-Poisson simulations with linearly transformed particles

    NASA Astrophysics Data System (ADS)

    Campos Pinto, Martin; Sonnendrücker, Eric; Friedman, Alex; Grote, David P.; Lund, Steve M.

    2014-10-01

    We introduce a deterministic discrete-particle simulation approach, the Linearly-Transformed Particle-In-Cell (LTPIC) method, that employs linear deformations of the particles to reduce the noise traditionally associated with particle schemes. Formally, transforming the particles is justified by local first order expansions of the characteristic flow in phase space. In practice the method amounts of using deformation matrices within the particle shape functions; these matrices are updated via local evaluations of the forward numerical flow. Because it is necessary to periodically remap the particles on a regular grid to avoid excessively deforming their shapes, the method can be seen as a development of Denavit's Forward Semi-Lagrangian (FSL) scheme (Denavit, 1972 [8]). However, it has recently been established (Campos Pinto, 2012 [20]) that the underlying Linearly-Transformed Particle scheme converges for abstract transport problems, with no need to remap the particles; deforming the particles can thus be seen as a way to significantly lower the remapping frequency needed in the FSL schemes, and hence the associated numerical diffusion. To couple the method with electrostatic field solvers, two specific charge deposition schemes are examined, and their performance compared with that of the standard deposition method. Finally, numerical 1d1v simulations involving benchmark test cases and halo formation in an initially mismatched thermal sheet beam demonstrate some advantages of our LTPIC scheme over the classical PIC and FSL methods. Benchmarked test cases also indicate that, for numerical choices involving similar computational effort, the LTPIC method is capable of accuracy comparable to or exceeding that of state-of-the-art, high-resolution Vlasov schemes.

  8. Chaotic magnetic fields in Vlasov-Maxwell equilibria

    SciTech Connect

    Ghosh, Abhijit; Janaki, M. S.; Dasgupta, Brahmananda; Bandyopadhyay, Alak

    2014-03-15

    Stationary solutions of Vlasov-Maxwell equations are obtained by exploiting the invariants of single particle motion leading to linear or nonlinear functional relations between current and vector potential. For a specific combination of invariants, it is shown that Vlasov-Maxwell equilibria have an associated Hamiltonian that exhibits chaos.

  9. The Collisionless Shock in Hybrid-Vlasov Simulations

    NASA Astrophysics Data System (ADS)

    Pfau-Kempf, Y.; Vainio, R. O.; Palmroth, M.; Battarbee, M. C.; Hoilijoki, S.; Ganse, U.; von Alfthan, S.

    2015-12-01

    We will present an overview of the recent numerical results on collisionless shocks obtained from Vlasiator, a hybrid-Vlasov simulation designed to model the Earth's magnetosphere. We will present results on the Earth bow shock under different solar wind and interplanetary magnetic field conditions and compare them with results on planar shocks for similar Mach numbers. As the simulation treats only ions kinetically, we will limit our study to the ion scales and beyond, characterizing the nature of fluctuations and ion distribution functions under different conditions and numerical settings. We will also investigate the role of dimensionality of the system, i.e., compare simulations performed in 2D and 3D in ordinary space (with full 3D in velocity space in both cases). In particular, we will characterize the foreshock ULF waves reproduced by the simulations and compare them with quasi-linear theory and observations of ion foreshocks ahead of the quasi-parallel bow shock and interplanetary shocks. The reasons for the differences in the foreshock characteristics under different modeling approximations will be discussed, in particular concerning the oblique propagation and dispersion relations of the foreshock waves, which are markedly different from quasi-linear theory and in quantitative agreement with spacecraft observations.

  10. Transient Growth in a Magnetized Vlasov Plasma

    NASA Astrophysics Data System (ADS)

    Ratushnaya, Valeria; Samtaney, Ravi

    2015-11-01

    Collisionless plasmas, such as those encountered in tokamaks, exhibit a rich variety of instabilities. The physical origin, triggering mechanisms and fundamental understanding of many tokamak instabilities, however, is still an open problem. Aiming to gain a better insight into this question, we investigate the stability properties of a collisionless Vlasov plasma for the case of: (a) stationary homogeneous magnetic field, and (b) weakly non-stationary and non-homogeneous magnetic field. We narrow the scope of our investigation to the case of a Maxwellian plasma and examine its evolution with an electrostatic approximation. We show that the linearized Vlasov operator is non-normal, which leads to an algebraic growth of perturbations in a magnetized plasma followed by exponential decay, i.e., classical Landau damping behaviour. This is a so-called transient growth phenomenon, developed in the framework of non-modal stability theory in the context of hydrodynamics. In a homogeneous magnetic field the typical time scales of the transient growth are of the order of several plasma periods. The first-order distribution function and the corresponding electric field are calculated and the dependence on the initial conditions is studied. Supported by baseline research funds at KAUST.

  11. A multigrid fluid pressure solver handling separating solid boundary conditions.

    PubMed

    Chentanez, Nuttapong; Müller-Fischer, Matthias

    2012-08-01

    We present a multigrid method for solving the linear complementarity problem (LCP) resulting from discretizing the Poisson equation subject to separating solid boundary conditions in an Eulerian liquid simulation’s pressure projection step. The method requires only a few small changes to a multigrid solver for linear systems. Our generalized solver is fast enough to handle 3D liquid simulations with separating boundary conditions in practical domain sizes. Previous methods could only handle relatively small 2D domains in reasonable time, because they used expensive quadratic programming (QP) solvers. We demonstrate our technique in several practical scenarios, including nonaxis-aligned containers and moving solids in which the omission of separating boundary conditions results in disturbing artifacts of liquid sticking to solids. Our measurements show, that the convergence rate of our LCP solver is close to that of a standard multigrid solver. PMID:22411885

  12. A wavelet-MRA-based adaptive semi-Lagrangian method for the relativistic Vlasov-Maxwell system

    SciTech Connect

    Besse, Nicolas Latu, Guillaume Ghizzo, Alain Sonnendruecker, Eric Bertrand, Pierre

    2008-08-10

    In this paper we present a new method for the numerical solution of the relativistic Vlasov-Maxwell system on a phase-space grid using an adaptive semi-Lagrangian method. The adaptivity is performed through a wavelet multiresolution analysis, which gives a powerful and natural refinement criterion based on the local measurement of the approximation error and regularity of the distribution function. Therefore, the multiscale expansion of the distribution function allows to get a sparse representation of the data and thus save memory space and CPU time. We apply this numerical scheme to reduced Vlasov-Maxwell systems arising in laser-plasma physics. Interaction of relativistically strong laser pulses with overdense plasma slabs is investigated. These Vlasov simulations revealed a rich variety of phenomena associated with the fast particle dynamics induced by electromagnetic waves as electron trapping, particle acceleration, and electron plasma wavebreaking. However, the wavelet based adaptive method that we developed here, does not yield significant improvements compared to Vlasov solvers on a uniform mesh due to the substantial overhead that the method introduces. Nonetheless they might be a first step towards more efficient adaptive solvers based on different ideas for the grid refinement or on a more efficient implementation. Here the Vlasov simulations are performed in a two-dimensional phase-space where the development of thin filaments, strongly amplified by relativistic effects requires an important increase of the total number of points of the phase-space grid as they get finer as time goes on. The adaptive method could be more useful in cases where these thin filaments that need to be resolved are a very small fraction of the hyper-volume, which arises in higher dimensions because of the surface-to-volume scaling and the essentially one-dimensional structure of the filaments. Moreover, the main way to improve the efficiency of the adaptive method is to

  13. Fermion particle production in semiclassical Boltzmann-Vlasov transport theory

    SciTech Connect

    Dawson, John F.; Mihaila, Bogdan; Cooper, Fred

    2009-07-01

    We present numerical solutions of the semiclassical Boltzmann-Vlasov equation for fermion particle-antiparticle production by strong electric fields in boost-invariant coordinates in (1+1) and (3+1) dimensional QED. We compare the Boltzmann-Vlasov results with those of recent quantum field theory calculations and find good agreement. We conclude that extending the Boltzmann-Vlasov approach to the case of QCD should allow us to do a thorough investigation of how backreaction affects recent results on the dependence of the transverse momentum distribution of quarks and antiquarks on a second Casimir invariant of color SU(3)

  14. Vlasov versus reduced kinetic theories for helically symmetric equilibria

    SciTech Connect

    Tasso, H.; Throumoulopoulos, G. N.

    2013-04-15

    A new constant of motion for helically symmetric equilibria in the vicinity of the magnetic axis is obtained in the framework of Vlasov theory. In view of this constant of motion the Vlasov theory is compared with drift kinetic and gyrokinetic theories near axis. It turns out that as in the case of axisymmetric equilibria [H. Tasso and G. N. Throumoulopoulos, Phys. Plasmas 18, 064507 (2011)] the Vlasov current density thereon can differ appreciably from the drift kinetic and gyrokinetic current densities. This indicates some limitation on the implications of reduced kinetic theories, in particular, as concerns the physics of energetic particles in the central region of magnetically confined plasmas.

  15. A hybrid-Vlasov model based on the current advance method for the simulation of collisionless magnetized plasma

    SciTech Connect

    Valentini, F. . E-mail: valentin@fis.unical.it; Travnicek, P.; Califano, F.; Hellinger, P.; Mangeney, A.

    2007-07-01

    We present a numerical scheme for the integration of the Vlasov-Maxwell system of equations for a non-relativistic plasma, in the hybrid approximation, where the Vlasov equation is solved for the ion distribution function and the electrons are treated as a fluid. In the Ohm equation for the electric field, effects of electron inertia have been retained, in order to include the small scale dynamics up to characteristic lengths of the order of the electron skin depth. The low frequency approximation is used by neglecting the time derivative of the electric field, i.e. the displacement current in the Ampere equation. The numerical algorithm consists in coupling the splitting method proposed by Cheng and Knorr in 1976 [C.Z. Cheng, G. Knorr, J. Comput. Phys. 22 (1976) 330-351.] and the current advance method (CAM) introduced by Matthews in 1994 [A.P. Matthews, J. Comput. Phys. 112 (1994) 102-116.] In its present version, the code solves the Vlasov-Maxwell equations in a five-dimensional phase space (2-D in the physical space and 3-D in the velocity space) and it is implemented in a parallel version to exploit the computational power of the modern massively parallel supercomputers. The structure of the algorithm and the coupling between the splitting method and the CAM method (extended to the hybrid case) is discussed in detail. Furthermore, in order to test the hybrid-Vlasov code, the numerical results on propagation and damping of linear ion-acoustic modes and time evolution of linear elliptically polarized Alfven waves (including the so-called whistler regime) are compared to the analytical solutions. Finally, the numerical results of the hybrid-Vlasov code on the parametric instability of Alfven waves are compared with those obtained using a two-fluid approach.

  16. MPI parallelization of Vlasov codes for the simulation of nonlinear laser-plasma interactions

    NASA Astrophysics Data System (ADS)

    Savchenko, V.; Won, K.; Afeyan, B.; Decyk, V.; Albrecht-Marc, M.; Ghizzo, A.; Bertrand, P.

    2003-10-01

    The simulation of optical mixing driven KEEN waves [1] and electron plasma waves [1] in laser-produced plasmas require nonlinear kinetic models and massive parallelization. We use Massage Passing Interface (MPI) libraries and Appleseed [2] to solve the Vlasov Poisson system of equations on an 8 node dual processor MAC G4 cluster. We use the semi-Lagrangian time splitting method [3]. It requires only row-column exchanges in the global data redistribution, minimizing the total number of communications between processors. Recurrent communication patterns for 2D FFTs involves global transposition. In the Vlasov-Maxwell case, we use splitting into two 1D spatial advections and a 2D momentum advection [4]. Discretized momentum advection equations have a double loop structure with the outer index being assigned to different processors. We adhere to a code structure with separate routines for calculations and data management for parallel computations. [1] B. Afeyan et al., IFSA 2003 Conference Proceedings, Monterey, CA [2] V. K. Decyk, Computers in Physics, 7, 418 (1993) [3] Sonnendrucker et al., JCP 149, 201 (1998) [4] Begue et al., JCP 151, 458 (1999)

  17. Beam-Plasma Instabilities in a 2D Yukawa Lattice

    SciTech Connect

    Kyrkos, S.; Kalman, G. J.; Rosenberg, M.

    2009-06-05

    We consider a 2D Yukawa lattice of grains, with a beam of other charged grains moving in the lattice plane. In contrast to Vlasov plasmas, where the electrostatic instability excited by the beam is only longitudinal, here both longitudinal and transverse instabilities of the lattice phonons can develop. We determine and compare the transverse and longitudinal growth rates. The growth rate spectrum in wave number space exhibits remarkable gaps where no instability can develop. Depending on the system parameters, the transverse instability can be selectively excited.

  18. Two-dimensional Vlasov code simulation of magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Togano, K.; Umeda, T.; Ogino, T.

    2009-12-01

    There are numerous types of self-consistent simulations that treat plasmas according to some approximations. The fluid codes are used to study global and macroscopic processes in space plasmas. Nonlinear microscopic processes in space plasmas are studied with kinetic simulation codes. Numerical methods for kinetic simulations fall into two groups. One is particle-in-cell (PIC) method which follows motions of individual particles in a self-consistent electromagnetic field. However, a limitation on the number of particles gives rise to numerical thermal fluctuations. Another approach is Vlasov method which follows spatial and temporal development of distribution functions in the position-velocity phase space. In contrast to PIC codes, numerical noise is substantially suppressed. However, Vlasov codes require huge computer resources to represent distribution functions and Vlasov simulation techniques are still developing. Owing to the rapid advancement of recent computer technology, Vlasov code simulation would be more essential in the near future. In the present study, a new two-and-half-dimensional and fully electromagnetic Vlasov simulation code is developed in which phase-space distribution functions are defined in five-dimensional position-velocity phase space (x,y,vx,vy,vz). The Vlasov equation in two-dimensional configuration and three-dimensional velocity spaces is solved with a non-oscillatory and conservative scheme, and the full set of Maxwell’s equations are self-consistently solved based on the implicit Finite Difference Time Domain (FDTD) method. The Geospace Environment Modeling (GEM) magnetic reconnection challenge is chosen as a benchmark test of our two-dimensional Vlasov code. The result is compared with the past simulation results with Darwin-Vlasov, explicit PIC and implicit PIC codes. The present simulation with a very-low spatial resolution gives a high growth rate of magnetic flux, which is in agreement with the results of the GEM

  19. Parallel Multigrid Equation Solver

    2001-09-07

    Prometheus is a fully parallel multigrid equation solver for matrices that arise in unstructured grid finite element applications. It includes a geometric and an algebraic multigrid method and has solved problems of up to 76 mullion degrees of feedom, problems in linear elasticity on the ASCI blue pacific and ASCI red machines.

  20. Vlasov simulations of auroral flux tubes

    NASA Astrophysics Data System (ADS)

    Gunell, Herbert; De Keyser, Johan; Mann, Ingrid

    2013-04-01

    Electric fields that are parallel to the earth's magnetic field are known to exist in the auroral zone, where they contribute to the acceleration of auroral electrons. Thus, parallel electric fields form an integral part of the auroral current circuit. Transverse electric fields at high altitude result in parallel electric fields as a consequence of the closure of the field-aligned currents through the conducting ionosphere (L. R. Lyons, JGR, vol. 85, 1724, 1980). These parallel electric fields can be supported by the magnetic mirror field (Alfvén and Fälthammar, Cosmical Electrodynamics, 2nd ed., 1963). The current-voltage characteristics of an auroral flux tube has been studied using stationary kinetic models (Knight, Planet. and Space Sci., vol. 21, 741-750, 1973). Observations have shown that field-aligned potential drops often are concentrated in electric double layers (e.g. Ergun, et al., Phys. Plasmas, vol. 9, 3685-3694, 2002). In the upward current region, 20-50% of the total potential drop has been identified as localised. How the rest of the potential is spread out as function of altitude is not yet known from observations (Ergun et al., J. Geophys. Res., vol. 109, A12220, doi:101.1029/2004JA010545, 2004). We have performed Vlasov simulations, using a model that is one-dimensional in configuration space and two-dimensional in velocity space. In the upward current region, most of the potential drop is found in a thin, stationary, double layer. The rest is in a region, which extends a few earth radii above it. The current-voltage characteristic approximately follows the Knight relation. The altitude of the double layer decreases with an increasing field-aligned potential drop. In the downward current region, the voltage is significantly lower than in the upward current region for the same value of the current. Double layers have been observed also in the downward current region (Andersson et al., Phys. Plasmas, vol. 9, 3600-3609, doi:10

  1. Pliris Solver Package

    SciTech Connect

    Kotulski, Joseph D.; Womble, David E.; Greenberg, David; Driessen, Brian

    2004-03-01

    PLIRIS is an object-oriented solver built on top of a previous matrix solver used in a number of application codes. Puns solves a linear system directly via LU factorization with partial pivoting. The user provides the linear system in terms of Epetra Objects including a matrix and right-hand-sides. The user can then factor the matrix and perform the forward and back solve at a later time or solve for multiple right-hand-sides at once. This package is used when dense matrices are obtained in the problem formulation. These dense matrices occur whenever boundary element techniques are chosen for the solution procedure. This has been used in electromagnetics for both static and frequency domain problems.

  2. Pliris Solver Package

    2004-03-01

    PLIRIS is an object-oriented solver built on top of a previous matrix solver used in a number of application codes. Puns solves a linear system directly via LU factorization with partial pivoting. The user provides the linear system in terms of Epetra Objects including a matrix and right-hand-sides. The user can then factor the matrix and perform the forward and back solve at a later time or solve for multiple right-hand-sides at once. This packagemore » is used when dense matrices are obtained in the problem formulation. These dense matrices occur whenever boundary element techniques are chosen for the solution procedure. This has been used in electromagnetics for both static and frequency domain problems.« less

  3. Trapped Electron Instability of Electron Plasma Waves: Vlasov simulations and theory

    NASA Astrophysics Data System (ADS)

    Berger, Richard; Chapman, Thomas; Brunner, Stephan

    2013-10-01

    The growth of sidebands of a large-amplitude electron plasma wave is studied with Vlasov simulations for a range of amplitudes (. 001 < eϕ0 /Te < 1) and wavenumbers (0 . 25 Vlasov simulations allows the growth rate of the unstable modes to be determined accurately and compared to theory. Despite the simplicity of the dispersion relation, growth rates found with the Kruer-Dawson-Sudan model [Kruer et al. PRL 23, 838 (1969)] agree quite well with the numerical results. The most unstable modes with frequency and wavenumber ω , k satisfy the relation, ω - k .vph = +/-ωbe , where vph =ω0 /k0 and ωbe is the bounce frequency of a deeply trapped electron. In 2D simulations, we find that the instability persists and co-exists with the filamentation instability. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344 and funded by the Laboratory Research and Development Program at LLNL under project tracking code 12-ERD.

  4. Analysis of cancellation exponents in two-dimensional Vlasov turbulence

    SciTech Connect

    De Vita, G.; Valentini, F.; Servidio, S.; Primavera, L.; Carbone, V.; Veltri, P.; Sorriso-Valvo, L.

    2014-07-15

    Statistical properties of plasma turbulence are investigated by means of two-dimensional Vlasov simulations. In particular, a classical technique called signed measure is used to characterize the scaling behavior and the topology of sign-oscillating structures in simulations of the hybrid Vlasov-Maxwell model. Exploring different turbulence regimes, varying both the plasma β and the level of fluctuations, it is observed that Vlasov turbulence manifests two ranges with different exponents, the transition being observed near the ion skin depth. These results, which may have applications to both laboratory and astrophysical systems, further confirm the singular nature of small scale fluctuations in a plasma, mainly classified as intermittent, narrow, and intense current sheets.

  5. Transient growth in stable linearized Vlasov-Maxwell plasmas

    NASA Astrophysics Data System (ADS)

    Podesta, J. J.

    2010-12-01

    Large amplitude transient growth of kinetic scale perturbations in stable collisionless magnetized plasmas has recently been demonstrated using a linearized Landau fluid model. Initial perturbations with lengthscales of the order of the ion gyroradius were shown to have transient timescales that in some cases were long compared to the ion gyroperiod, Ωit≫1. Moreover, it was suggested that such perturbations are not rare but instead form a large class within the set of all possible initial conditions. For collisionless plasmas, the Vlasov-Maxwell equations provide a more complete description of kinetic physics and the existence of transient growth of solutions for the linearized Vlasov-Maxwell system is an interesting question. The existence of transient growth of solutions is demonstrated here for a special case of the Vlasov-Maxwell equations, namely, the one dimensional Vlasov-Poisson system. The analysis is different from the standard approach of nonmodal analysis since the initial value problem is described by a Volterra integral equation of the second kind, reflecting the fact that the time evolution of the system depends on the memory of the state from time zero through time t. For the case of a thermal equilibrium plasma, it is shown how initial conditions may be constructed to obtain solutions that grow linearly in time; the duration of this growth is the time required for a thermal electron to traverse the wavelength of the initial perturbation, a timescale that can last for many plasma periods 2π/ωpe, thus demonstrating the existence of transient growth of solutions for the linearized Vlasov-Poisson system. The results suggest that the phenomenon of transient growth may be a common feature of the linearized Vlasov-Maxwell system as well as for Landau fluid models.

  6. A multi-dimensional nonlinearly implicit, electromagnetic Vlasov-Darwin particle-in-cell (PIC) algorithm

    NASA Astrophysics Data System (ADS)

    Chen, Guangye; Chacón, Luis; CoCoMans Team

    2014-10-01

    For decades, the Vlasov-Darwin model has been recognized to be attractive for PIC simulations (to avoid radiative noise issues) in non-radiative electromagnetic regimes. However, the Darwin model results in elliptic field equations that renders explicit time integration unconditionally unstable. Improving on linearly implicit schemes, fully implicit PIC algorithms for both electrostatic and electromagnetic regimes, with exact discrete energy and charge conservation properties, have been recently developed in 1D. This study builds on these recent algorithms to develop an implicit, orbit-averaged, time-space-centered finite difference scheme for the particle-field equations in multiple dimensions. The algorithm conserves energy, charge, and canonical-momentum exactly, even with grid packing. A simple fluid preconditioner allows efficient use of large timesteps, O (√{mi/me}c/veT) larger than the explicit CFL. We demonstrate the accuracy and efficiency properties of the of the algorithm with various numerical experiments in 2D3V.

  7. On the singularity of the Vlasov-Poisson system

    SciTech Connect

    Zheng, Jian; Qin, Hong

    2013-09-15

    The Vlasov-Poisson system can be viewed as the collisionless limit of the corresponding Fokker-Planck-Poisson system. It is reasonable to expect that the result of Landau damping can also be obtained from the Fokker-Planck-Poisson system when the collision frequency ν approaches zero. However, we show that the collisionless Vlasov-Poisson system is a singular limit of the collisional Fokker-Planck-Poisson system, and Landau's result can be recovered only as the ν approaches zero from the positive side.

  8. On the Singularity of the Vlasov-Poisson System

    SciTech Connect

    and Hong Qin, Jian Zheng

    2013-04-26

    The Vlasov-Poisson system can be viewed as the collisionless limit of the corresponding Fokker- Planck-Poisson system. It is reasonable to expect that the result of Landau damping can also be obtained from the Fokker-Planck-Poisson system when the collision frequency v approaches zero. However, we show that the colllisionless Vlasov-Poisson system is a singular limit of the collisional Fokker-Planck-Poisson system, and Landau's result can be recovered only as the approaching zero from the positive side.

  9. Hamiltonian time integrators for Vlasov-Maxwell equations

    SciTech Connect

    He, Yang; Xiao, Jianyuan; Zhang, Ruili; Liu, Jian; Qin, Hong; Sun, Yajuan

    2015-12-15

    Hamiltonian time integrators for the Vlasov-Maxwell equations are developed by a Hamiltonian splitting technique. The Hamiltonian functional is split into five parts, which produces five exactly solvable subsystems. Each subsystem is a Hamiltonian system equipped with the Morrison-Marsden-Weinstein Poisson bracket. Compositions of the exact solutions provide Poisson structure preserving/Hamiltonian methods of arbitrary high order for the Vlasov-Maxwell equations. They are then accurate and conservative over a long time because of the Poisson-preserving nature.

  10. HPCCG Solver Package

    2007-03-01

    HPCCG is a simple PDE application and preconditioned conjugate gradient solver that solves a linear system on a beam-shaped domain. Although it does not address many performance issues present in real engineering applications, such as load imbalance and preconditioner scalability, it can serve as a first "sanity test" of new processor design choices, inter-connect network design choices and the scalability of a new computer system. Because it is self-contained, easy to compile and easily scaledmore » to 100s or 1000s of porcessors, it can be an attractive study code for computer system designers.« less

  11. Vlasov Simulation of the Interaction Between the Solar Wind and a Dielectric Body with Magnetic Anomaly

    NASA Astrophysics Data System (ADS)

    Ito, Y.; Umeda, T.; Ogino, T.

    2011-12-01

    The interaction of a plasma flow with an unmagnetized object is quite different from that with a magnetized object such as the Earth. Due to the absence of the global magnetic field, the unmagnetized object absorbs plasma particles which reach the surface, generating a plasma cavity called wake in the anti-solar side of the object. Since the velocity of the solar wind (SW) is larger than the thermal velocity of ions, ions cannot penetrate into the nightside of the moon. However, ions were observed in the deep wake by a Japanese spacecraft KAGUYA (SELENE) which is orbiting the moon in a polar orbit around 100km altitude. A key mechanism of this phenomenon is thought to be scattering of SW ions at the lunar dayside surface by an interaction between the Interplanetary Magnetic Field (IMF) and a lunar magnetic anomaly. In the present study, we examine structure of the wake due to the interaction between IMF and the magnetic anomaly via a full-kinetic Vlasov simulation. We performed one of the first global Vlasov simulations of magnetosphere. We assumed a 2.5D Cartesian system in which spatial grids are taken in the 2D plane and velocity grids are taken in 3D space. There exists an insulative sphere, in which the charge accumulates at the surface. The intrinsic magnetic field of the object as the magnetic anomaly is assumed to be the 2D dipole magnetic field. The solar wind also carries an IMF. The simulation results suggest that the magnetic anomaly on the dayside surface of the moon would affect to the formation of the wake field. The structure of plasma void is modified by the convection of magnetic field motion.

  12. Multirate Particle-in-Cell Time Integration Techniques of Vlasov-Maxwell Equations for Collisionless Kinetic Plasma Simulations

    SciTech Connect

    Chen, Guangye; Chacon, Luis; Knoll, Dana Alan; Barnes, Daniel C

    2015-07-31

    A multi-rate PIC formulation was developed that employs large timesteps for slow field evolution, and small (adaptive) timesteps for particle orbit integrations. Implementation is based on a JFNK solver with nonlinear elimination and moment preconditioning. The approach is free of numerical instabilities (ωpeΔt >>1, and Δx >> λD), and requires many fewer dofs (vs. explicit PIC) for comparable accuracy in challenging problems. Significant gains (vs. conventional explicit PIC) may be possible for large scale simulations. The paper is organized as follows: Vlasov-Maxwell Particle-in-cell (PIC) methods for plasmas; Explicit, semi-implicit, and implicit time integrations; Implicit PIC formulation (Jacobian-Free Newton-Krylov (JFNK) with nonlinear elimination allows different treatments of disparate scales, discrete conservation properties (energy, charge, canonical momentum, etc.)); Some numerical examples; and Summary.

  13. Aniso2D

    2005-07-01

    Aniso2d is a two-dimensional seismic forward modeling code. The earth is parameterized by an X-Z plane in which the seismic properties Can have monoclinic with x-z plane symmetry. The program uses a user define time-domain wavelet to produce synthetic seismograms anrwhere within the two-dimensional media.

  14. Global Weak Solutions to the Magnetohydrodynamic and Vlasov Equations

    NASA Astrophysics Data System (ADS)

    Chen, Robin Ming; Hu, Jilong; Wang, Dehua

    2016-06-01

    An initial-boundary value problem for the fluid-particle system of the inhomogeneous incompressible magnetohydrodynamic equations coupled with the Vlasov equation is studied in a three-dimensional bounded domain. New ideas are introduced to construct the approximate solutions. The existence of global weak solutions is established by the energy estimates and the weak convergence method.

  15. Maxwell-Vlasov equations as a continuous Hamiltonian system

    SciTech Connect

    Morrison, P.J.

    1980-11-01

    The well-known Maxwell-Vlasov equations that describe a collisionless plasma are cast into Hamiltonian form. The dynamical variables are the physical although noncanonical variables E, B, and f. We present a Poisson bracket which acts on these variables and the energy functional to produce the equations of motion.

  16. Maxwell-Vlasov equations as a continuous Hamiltonian system

    SciTech Connect

    Morrison, P.J.

    1980-09-01

    The well-known Maxwell-Vlasov equations that describe a collisionless plasma are cast into Hamiltonian form. The dynamical variables are the physical although noncanonical variables E, B and f. We present a Poisson bracket which acts on these variables and the energy functional to produce the equations of motion.

  17. Mesh2d

    SciTech Connect

    Greg Flach, Frank Smith

    2011-12-31

    Mesh2d is a Fortran90 program designed to generate two-dimensional structured grids of the form [x(i),y(i,j)] where [x,y] are grid coordinates identified by indices (i,j). The x(i) coordinates alone can be used to specify a one-dimensional grid. Because the x-coordinates vary only with the i index, a two-dimensional grid is composed in part of straight vertical lines. However, the nominally horizontal y(i,j0) coordinates along index i are permitted to undulate or otherwise vary. Mesh2d also assigns an integer material type to each grid cell, mtyp(i,j), in a user-specified manner. The complete grid is specified through three separate input files defining the x(i), y(i,j), and mtyp(i,j) variations.

  18. Mesh2d

    2011-12-31

    Mesh2d is a Fortran90 program designed to generate two-dimensional structured grids of the form [x(i),y(i,j)] where [x,y] are grid coordinates identified by indices (i,j). The x(i) coordinates alone can be used to specify a one-dimensional grid. Because the x-coordinates vary only with the i index, a two-dimensional grid is composed in part of straight vertical lines. However, the nominally horizontal y(i,j0) coordinates along index i are permitted to undulate or otherwise vary. Mesh2d also assignsmore » an integer material type to each grid cell, mtyp(i,j), in a user-specified manner. The complete grid is specified through three separate input files defining the x(i), y(i,j), and mtyp(i,j) variations.« less

  19. Vertical 2D Heterostructures

    NASA Astrophysics Data System (ADS)

    Lotsch, Bettina V.

    2015-07-01

    Graphene's legacy has become an integral part of today's condensed matter science and has equipped a whole generation of scientists with an armory of concepts and techniques that open up new perspectives for the postgraphene area. In particular, the judicious combination of 2D building blocks into vertical heterostructures has recently been identified as a promising route to rationally engineer complex multilayer systems and artificial solids with intriguing properties. The present review highlights recent developments in the rapidly emerging field of 2D nanoarchitectonics from a materials chemistry perspective, with a focus on the types of heterostructures available, their assembly strategies, and their emerging properties. This overview is intended to bridge the gap between two major—yet largely disjunct—developments in 2D heterostructures, which are firmly rooted in solid-state chemistry or physics. Although the underlying types of heterostructures differ with respect to their dimensions, layer alignment, and interfacial quality, there is common ground, and future synergies between the various assembly strategies are to be expected.

  20. Parallel tridiagonal equation solvers

    NASA Technical Reports Server (NTRS)

    Stone, H. S.

    1974-01-01

    Three parallel algorithms were compared for the direct solution of tridiagonal linear systems of equations. The algorithms are suitable for computers such as ILLIAC 4 and CDC STAR. For array computers similar to ILLIAC 4, cyclic odd-even reduction has the least operation count for highly structured sets of equations, and recursive doubling has the least count for relatively unstructured sets of equations. Since the difference in operation counts for these two algorithms is not substantial, their relative running times may be more related to overhead operations, which are not measured in this paper. The third algorithm, based on Buneman's Poisson solver, has more arithmetic operations than the others, and appears to be the least favorable. For pipeline computers similar to CDC STAR, cyclic odd-even reduction appears to be the most preferable algorithm for all cases.

  1. Amesos2 Templated Direct Sparse Solver Package

    2011-05-24

    Amesos2 is a templated direct sparse solver package. Amesos2 provides interfaces to direct sparse solvers, rather than providing native solver capabilities. Amesos2 is a derivative work of the Trilinos package Amesos.

  2. MILAMIN 2 - Fast MATLAB FEM solver

    NASA Astrophysics Data System (ADS)

    Dabrowski, Marcin; Krotkiewski, Marcin; Schmid, Daniel W.

    2013-04-01

    MILAMIN is a free and efficient MATLAB-based two-dimensional FEM solver utilizing unstructured meshes [Dabrowski et al., G-cubed (2008)]. The code consists of steady-state thermal diffusion and incompressible Stokes flow solvers implemented in approximately 200 lines of native MATLAB code. The brevity makes the code easily customizable. An important quality of MILAMIN is speed - it can handle millions of nodes within minutes on one CPU core of a standard desktop computer, and is faster than many commercial solutions. The new MILAMIN 2 allows three-dimensional modeling. It is designed as a set of functional modules that can be used as building blocks for efficient FEM simulations using MATLAB. The utilities are largely implemented as native MATLAB functions. For performance critical parts we use MUTILS - a suite of compiled MEX functions optimized for shared memory multi-core computers. The most important features of MILAMIN 2 are: 1. Modular approach to defining, tracking, and discretizing the geometry of the model 2. Interfaces to external mesh generators (e.g., Triangle, Fade2d, T3D) and mesh utilities (e.g., element type conversion, fast point location, boundary extraction) 3. Efficient computation of the stiffness matrix for a wide range of element types, anisotropic materials and three-dimensional problems 4. Fast global matrix assembly using a dedicated MEX function 5. Automatic integration rules 6. Flexible prescription (spatial, temporal, and field functions) and efficient application of Dirichlet, Neuman, and periodic boundary conditions 7. Treatment of transient and non-linear problems 8. Various iterative and multi-level solution strategies 9. Post-processing tools (e.g., numerical integration) 10. Visualization primitives using MATLAB, and VTK export functions We provide a large number of examples that show how to implement a custom FEM solver using the MILAMIN 2 framework. The examples are MATLAB scripts of increasing complexity that address a given

  3. Design of the LRP airfoil series using 2D CFD

    NASA Astrophysics Data System (ADS)

    Zahle, Frederik; Bak, Christian; Sørensen, Niels N.; Vronsky, Tomas; Gaudern, Nicholas

    2014-06-01

    This paper describes the design and wind tunnel testing of a high-Reynolds number, high lift airfoil series designed for wind turbines. The airfoils were designed using direct gradient- based numerical multi-point optimization based on a Bezier parameterization of the shape, coupled to the 2D Navier-Stokes flow solver EllipSys2D. The resulting airfoils, the LRP2-30 and LRP2-36, achieve both higher operational lift coefficients and higher lift to drag ratios compared to the equivalent FFA-W3 airfoils.

  4. Two coupled particle-finite volume methods using Delaunay-Voronoie meshes for the approximation of Vlasov-Poisson and Vlasov-Maxwell equations

    SciTech Connect

    Hermeline, F. )

    1993-05-01

    This paper deals with the approximation of Vlasov-Poisson and Vlasov-Maxwell equations. We present two coupled particle-finite volume methods which use the properties of Delaunay-Voronoi meshes. These methods are applied to benchmark calculations and engineering problems such as simulation of electron injector devices. 42 refs., 13 figs.

  5. A GPU-accelerated flow solver for incompressible two-phase fluid flows

    NASA Astrophysics Data System (ADS)

    Codyer, Stephen; Raessi, Mehdi; Khanna, Gaurav

    2011-11-01

    We present a numerical solver for incompressible, immiscible, two-phase fluid flows that is accelerated by using Graphics Processing Units (GPUs). The Navier-Stokes equations are solved by the projection method, which involves solving a pressure Poisson problem at each time step. A second-order discretization of the Poisson problem leads to a sparse matrix with five and seven diagonals for two- and three-dimensional simulations, respectively. Running a serial linear algebra solver on a single CPU can take 50-99.9% of the total simulation time to solve the above system for pressure. To remove this bottleneck, we utilized the large parallelization capabilities of GPUs; we developed a linear algebra solver based on the conjugate gradient iterative method (CGIM) by using CUDA 4.0 libraries and compared its performance with CUSP, an open-source, GPU library for linear algebra. Compared to running the CGIM solver on a single CPU core, for a 2D case, our GPU solver yields speedups of up to 88x in solver time and 81x overall time on a single GPU card. In 3D cases, the speedups are up to 81x (solver) and 15x (overall). Speedup is faster at higher grid resolutions and our GPU solver outperforms CUSP. Current work examines the acceleration versus a parallel CGIM CPU solver.

  6. Magnetic Field Solver

    NASA Technical Reports Server (NTRS)

    Ilin, Andrew V.

    2006-01-01

    The Magnetic Field Solver computer program calculates the magnetic field generated by a group of collinear, cylindrical axisymmetric electromagnet coils. Given the current flowing in, and the number of turns, axial position, and axial and radial dimensions of each coil, the program calculates matrix coefficients for a finite-difference system of equations that approximates a two-dimensional partial differential equation for the magnetic potential contributed by the coil. The program iteratively solves these finite-difference equations by use of the modified incomplete Cholesky preconditioned-conjugate-gradient method. The total magnetic potential as a function of axial (z) and radial (r) position is then calculated as a sum of the magnetic potentials of the individual coils, using a high-accuracy interpolation scheme. Then the r and z components of the magnetic field as functions of r and z are calculated from the total magnetic potential by use of a high-accuracy finite-difference scheme. Notably, for the finite-difference calculations, the program generates nonuniform two-dimensional computational meshes from nonuniform one-dimensional meshes. Each mesh is generated in such a way as to minimize the numerical error for a benchmark one-dimensional magnetostatic problem.

  7. Sherlock Holmes, Master Problem Solver.

    ERIC Educational Resources Information Center

    Ballew, Hunter

    1994-01-01

    Shows the connections between Sherlock Holmes's investigative methods and mathematical problem solving, including observations, characteristics of the problem solver, importance of data, questioning the obvious, learning from experience, learning from errors, and indirect proof. (MKR)

  8. Critical collapse in the spherically symmetric Einstein-Vlasov model

    NASA Astrophysics Data System (ADS)

    Akbarian, Arman; Choptuik, Matthew W.

    2014-11-01

    We solve the coupled Einstein-Vlasov system in spherical symmetry using direct numerical integration of the Vlasov equation in phase space. Focusing on the case of massless particles we study critical phenomena in the model, finding strong evidence for generic type I behavior at the black hole threshold that parallels what has previously been observed in the massive sector. For differing families of initial data we find distinct critical solutions, so there is no universality of the critical configuration itself. However we find indications of at least a weak universality in the lifetime scaling exponent, which is yet to be understood. Additionally, we clarify the role that angular momentum plays in the critical behavior in the massless case.

  9. Vlasov treatment of coherent synchrotron radiation from arbitrary planar orbits

    NASA Astrophysics Data System (ADS)

    Warnock, R.; Bassi, G.; Ellison, J. A.

    2006-03-01

    We study the influence of coherent synchrotron radiation (CSR) on particle bunches traveling on arbitrary planar orbits between parallel conducting plates which represent the vacuum chamber. Our goal is to follow the time evolution of the phase space distribution by solving the Vlasov-Maxwell equations in the time domain. This should provide simulations with lower numerical noise than the macro-particle method, and allow one to study such issues as emittance degradation and microbunching due to CSR in bunch compressors. The fields excited by the bunch are computed in the laboratory frame from a new formula that leads to much simpler computations than usual methods. The nonlinear Vlasov equation, formulated in the interaction picture, is integrated in the beam frame by approximating the Perron-Frobenius operator. For application to a chicane bunch compressor we take steps to deal with energy chirp.

  10. Variational formulations of guiding-center Vlasov-Maxwell theory

    NASA Astrophysics Data System (ADS)

    Brizard, Alain J.; Tronci, Cesare

    2016-06-01

    The variational formulations of guiding-center Vlasov-Maxwell theory based on Lagrange, Euler, and Euler-Poincaré variational principles are presented. Each variational principle yields a different approach to deriving guiding-center polarization and magnetization effects into the guiding-center Maxwell equations. The conservation laws of energy, momentum, and angular momentum are also derived by Noether method, where the guiding-center stress tensor is now shown to be explicitly symmetric.

  11. Vlasov simulations of collisionless magnetic reconnection without background density

    NASA Astrophysics Data System (ADS)

    Schmitz, H.; Grauer, R.

    2008-02-01

    A standard starting point for the simulation of collisionless reconnection is the Harris equilibrium which is made up of a current sheet that separates two regions of opposing magnetic field. Magnetohydrodynamic simulations of collisionless reconnection usually include a homogeneous background density for reasons of numerical stability. While, in some cases, this is a realistic assumption, the background density may introduce new effects both due to the more involved structure of the distribution function or due to the fact that the Alfvèn speed remains finite far away from the current sheet. We present a fully kinetic Vlasov simulation of the perturbed Harris equilibrium using a Vlasov code. Parameters are chosen to match the Geospace Environment Modeling (GEM) Magnetic Reconnection Challenge but excluding the background density. This allows to compare with earlier simulations [Schmitz H, Grauer R. Kinetic Vlasov simulations of collisionless magnetic reconnection. Phys Plasmas 2006;13:092309] which include the background density. It is found that the absence of a background density causes the reconnection rate to be higher. On the other hand, the time until the onset of reconnection is hardly affected. Again the off diagonal elements of the pressure tensor are found to be important on the X-line but with modified importance for the individual terms.

  12. Application of an unstructured grid flow solver to planes, trains and automobiles

    NASA Technical Reports Server (NTRS)

    Spragle, Gregory S.; Smith, Wayne A.; Yadlin, Yoram

    1993-01-01

    Rampant, an unstructured flow solver developed at Fluent Inc., is used to compute three-dimensional, viscous, turbulent, compressible flow fields within complex solution domains. Rampant is an explicit, finite-volume flow solver capable of computing flow fields using either triangular (2d) or tetrahedral (3d) unstructured grids. Local time stepping, implicit residual smoothing, and multigrid techniques are used to accelerate the convergence of the explicit scheme. The paper describes the Rampant flow solver and presents flow field solutions about a plane, train, and automobile.

  13. Numerical Vlasov-Maxwell modelling of space plasma

    NASA Astrophysics Data System (ADS)

    Eliasson, Bengt Erik

    The Vlasov equation describes the evolution of the distribution function of particles in phase space (x, v), where the particles interact with long-range forces, but where short-range “collisional” forces are neglected. A space plasma consists of low-mass electrically charged particles, and therefore the most important long-range forces acting in the plasma are the Lorentz forces created by electromagnetic fields. What makes the numerical solution of the Vlasov equation a challenging task is that the fully three-dimensional problem leads to a partial differential equation in the six-dimensional phase space, plus time, making it hard even to store a discretised solution in a computer's memory. Solutions to the Vlasov equation have also a tendency of becoming oscillatory in velocity space, due to free streaming terms (ballistic particles), in which steep gradients are created and problems of calculating the ν (velocity) derivative of the function accurately increase with time. In the present thesis, the numerical treatment is limited to one- and two-dimensional systems, leading to solutions in two- and four-dimensional phase space, respectively, plus time. The numerical method developed is based on the technique of Fourier transforming the Vlasov equation in velocity space and then solving the resulting equation, in which the small-scale information in velocity space is removed through outgoing wave boundary conditions in the Fourier transformed velocity space. The Maxwell equations are rewritten in a form which conserves the divergences of the electric and magnetic fields, by means of the Lorentz potentials. The resulting equations are solved numerically by high order methods, reducing the need for numerical over-sampling of the problem. The algorithm has been implemented in Fortran 90, and the code for solving the one-dimensional Vlasov equation has been parallelised by the method of domain decomposition, and has been implemented using the Message Passing

  14. A multi-dimensional, energy- and charge-conserving, nonlinearly implicit, electromagnetic Vlasov-Darwin particle-in-cell algorithm

    NASA Astrophysics Data System (ADS)

    Chen, G.; Chacón, L.

    2015-12-01

    For decades, the Vlasov-Darwin model has been recognized to be attractive for particle-in-cell (PIC) kinetic plasma simulations in non-radiative electromagnetic regimes, to avoid radiative noise issues and gain computational efficiency. However, the Darwin model results in an elliptic set of field equations that renders conventional explicit time integration unconditionally unstable. Here, we explore a fully implicit PIC algorithm for the Vlasov-Darwin model in multiple dimensions, which overcomes many difficulties of traditional semi-implicit Darwin PIC algorithms. The finite-difference scheme for Darwin field equations and particle equations of motion is space-time-centered, employing particle sub-cycling and orbit-averaging. The algorithm conserves total energy, local charge, canonical-momentum in the ignorable direction, and preserves the Coulomb gauge exactly. An asymptotically well-posed fluid preconditioner allows efficient use of large cell sizes, which are determined by accuracy considerations, not stability, and can be orders of magnitude larger than required in a standard explicit electromagnetic PIC simulation. We demonstrate the accuracy and efficiency properties of the algorithm with various numerical experiments in 2D-3V.

  15. Scalable Parallel Algebraic Multigrid Solvers

    SciTech Connect

    Bank, R; Lu, S; Tong, C; Vassilevski, P

    2005-03-23

    The authors propose a parallel algebraic multilevel algorithm (AMG), which has the novel feature that the subproblem residing in each processor is defined over the entire partition domain, although the vast majority of unknowns for each subproblem are associated with the partition owned by the corresponding processor. This feature ensures that a global coarse description of the problem is contained within each of the subproblems. The advantages of this approach are that interprocessor communication is minimized in the solution process while an optimal order of convergence rate is preserved; and the speed of local subproblem solvers can be maximized using the best existing sequential algebraic solvers.

  16. General complex polynomial root solver

    NASA Astrophysics Data System (ADS)

    Skowron, J.; Gould, A.

    2012-12-01

    This general complex polynomial root solver, implemented in Fortran and further optimized for binary microlenses, uses a new algorithm to solve polynomial equations and is 1.6-3 times faster than the ZROOTS subroutine that is commercially available from Numerical Recipes, depending on application. The largest improvement, when compared to naive solvers, comes from a fail-safe procedure that permits skipping the majority of the calculations in the great majority of cases, without risking catastrophic failure in the few cases that these are actually required.

  17. Self-correcting Multigrid Solver

    SciTech Connect

    Jerome L.V. Lewandowski

    2004-06-29

    A new multigrid algorithm based on the method of self-correction for the solution of elliptic problems is described. The method exploits information contained in the residual to dynamically modify the source term (right-hand side) of the elliptic problem. It is shown that the self-correcting solver is more efficient at damping the short wavelength modes of the algebraic error than its standard equivalent. When used in conjunction with a multigrid method, the resulting solver displays an improved convergence rate with no additional computational work.

  18. A discontinuous Galerkin method for Vlasov - like systems

    NASA Astrophysics Data System (ADS)

    Gamba, I. M.; Cheng, Yingda; Morrison, P. J.

    2011-10-01

    The discontinuous Galerkin (DG) method developed by some of us for integrating the Vlasov-Poisson system is described and generalized. Higher order polynomials on basis elements are used and extensive error analyses, including recurrence properties, are discussed. The method is conservative and preserves positivity of the distribution function. Several linear and nonlinear examples are treated that elucidate the DG methods ability to resolve filamentation and obtain high resolution BGK states. PJM was upported by U.S. Dept. of Energy Contract # DE-FG05-80ET-53088.

  19. A splitting algorithm for Vlasov simulation with filamentation filtration

    NASA Technical Reports Server (NTRS)

    Klimas, A. J.; Farrell, W. M.

    1994-01-01

    A Fourier-Fourier transformed version of the splitting algorithm for simulating solutions of the Vlasov-Poisson system of equations is introduced. It is shown that with the inclusion of filamentation filtration in this transformed algorithm it is both faster and more stable than the standard splitting algorithm. It is further shown that in a scalar computer environment this new algorithm is approximately equal in speed and far less noisy than its particle-in-cell counterpart. It is conjectured that in a multiprocessor environment the filtered splitting algorithm would be faster while producing more precise results.

  20. Trapping scaling for bifurcations in the Vlasov systems

    NASA Astrophysics Data System (ADS)

    Barré, J.; Métivier, D.; Yamaguchi, Y. Y.

    2016-04-01

    We study nonoscillating bifurcations of nonhomogeneous steady states of the Vlasov equation, a situation occurring in galactic models, or for Bernstein-Greene-Kruskal modes in plasma physics. Through an unstable manifold expansion, we show that in one spatial dimension the dynamics is very sensitive to the initial perturbation: the instability may saturate at small amplitude—generalizing the "trapping scaling" of plasma physics—or may grow to produce a large-scale modification of the system. Furthermore, resonances are strongly suppressed, leading to different phenomena with respect to the homogeneous case. These analytical findings are illustrated and extended by direct numerical simulations with a cosine interaction potential.

  1. A Vlasov equation with Dirac potential used in fusion plasmas

    SciTech Connect

    Bardos, Claude; Nouri, Anne

    2012-11-15

    Well-posedness of the Cauchy problem is analyzed for a singular Vlasov equation governing the evolution of the ionic distribution function of a quasineutral fusion plasma. The Penrose criterium is adapted to the linearized problem around a time and space homogeneous distribution function showing (due to the singularity) more drastic differences between stable and unstable situations. This pathology appears on the full nonlinear problem, well-posed locally in time with analytic initial data, but generally ill-posed in the Hadamard sense. Eventually with a very different class of solutions, mono-kinetic, which constrains the structure of the density distribution, the problem becomes locally in time well-posed.

  2. Vlasov simulations of electron trapping on auroral field lines

    NASA Astrophysics Data System (ADS)

    Gunell, H.; Mann, I.; De Keyser, J.; Andersson, L.

    2012-04-01

    In the auroral zone, electric fields that are parallel to the earth's magnetic field are known to exist and to contribute to the acceleration of auroral electrons. Transverse electric fields at high altitude result in parallel electric fields as a consequence of the closure of the field-aligned currents through the conducting ionosphere (L. R. Lyons, JGR, vol. 85, 1724, 1980). These parallel electric fields can be supported by the magnetic mirror field (Alfvén and Fälthammar, Cosmical Electrodynamics, 2nd ed., 1963). Stationary kinetic models have been used to study the current-voltage characteristics of the auroral current circuit (Knight, Planet. and Space Sci., vol. 21, 741-750, 1973). Fluid and hybrid simulations have been used to model parallel electric fields and Alfvén waves, and to study the relationship between them (e.g., Vedin and Rönnmark, JGR, vol. 111, 12201, 2006). Ergun, et al. (GRL, vol. 27, 4053-4056, 2000) found stationary Vlasov solutions over regions extending several Earth radii, and Main, et al. (PRL, vol. 97, 185001, 2006) performed Vlasov simulations of the auroral acceleration region. Observations have shown that field-aligned potential drops often are concentrated in electric double layers (e.g. Ergun, et al., Phys. Plasmas, vol. 9, 3685-3694, 2002). In the upward current region, 20-50% of the total potential drop has been identified as localised. How the rest of the potential is spread out as function of altitude is not yet known from observations. Gunell et al. (submitted to GRL, 2012) performed Vlasov simulations, using a model that is one-dimensional in configuration space and two-dimensional in velocity space, and found that about half of the potential drop is found in a thin double layer. The other half is in a region, which extends a few earth radii above it. The double layer itself is stationary, while there are oscillations in the longer low-field region. The current-voltage characteristic approximately follows the Knight

  3. High divergent 2D grating

    NASA Astrophysics Data System (ADS)

    Wang, Jin; Ma, Jianyong; Zhou, Changhe

    2014-11-01

    A 3×3 high divergent 2D-grating with period of 3.842μm at wavelength of 850nm under normal incidence is designed and fabricated in this paper. This high divergent 2D-grating is designed by the vector theory. The Rigorous Coupled Wave Analysis (RCWA) in association with the simulated annealing (SA) is adopted to calculate and optimize this 2D-grating.The properties of this grating are also investigated by the RCWA. The diffraction angles are more than 10 degrees in the whole wavelength band, which are bigger than the traditional 2D-grating. In addition, the small period of grating increases the difficulties of fabrication. So we fabricate the 2D-gratings by direct laser writing (DLW) instead of traditional manufacturing method. Then the method of ICP etching is used to obtain the high divergent 2D-grating.

  4. Implicit adaptive mesh refinement for 2D reduced resistive magnetohydrodynamics

    NASA Astrophysics Data System (ADS)

    Philip, Bobby; Chacón, Luis; Pernice, Michael

    2008-10-01

    An implicit structured adaptive mesh refinement (SAMR) solver for 2D reduced magnetohydrodynamics (MHD) is described. The time-implicit discretization is able to step over fast normal modes, while the spatial adaptivity resolves thin, dynamically evolving features. A Jacobian-free Newton-Krylov method is used for the nonlinear solver engine. For preconditioning, we have extended the optimal "physics-based" approach developed in [L. Chacón, D.A. Knoll, J.M. Finn, An implicit, nonlinear reduced resistive MHD solver, J. Comput. Phys. 178 (2002) 15-36] (which employed multigrid solver technology in the preconditioner for scalability) to SAMR grids using the well-known Fast Adaptive Composite grid (FAC) method [S. McCormick, Multilevel Adaptive Methods for Partial Differential Equations, SIAM, Philadelphia, PA, 1989]. A grid convergence study demonstrates that the solver performance is independent of the number of grid levels and only depends on the finest resolution considered, and that it scales well with grid refinement. The study of error generation and propagation in our SAMR implementation demonstrates that high-order (cubic) interpolation during regridding, combined with a robustly damping second-order temporal scheme such as BDF2, is required to minimize impact of grid errors at coarse-fine interfaces on the overall error of the computation for this MHD application. We also demonstrate that our implementation features the desired property that the overall numerical error is dependent only on the finest resolution level considered, and not on the base-grid resolution or on the number of refinement levels present during the simulation. We demonstrate the effectiveness of the tool on several challenging problems.

  5. Vlasov Simulations of Electron Plasma and Ion Acoustic Waves: self-focusing and harmonics

    NASA Astrophysics Data System (ADS)

    Banks, Jeffrey; Berger, R.; Cohen, B.; Hittinger, J.; Brunner, S.

    2011-10-01

    Vlasov simulations of nonlinear electron plasma (EPW) and ion acoustic waves (IAW) are presented in one and two dimensions. In 2D simulations with LOKI (Banks et al., 18, 052102 (2011)) the waves are created with an external traveling wave potential with a transverse envelope of width Δy such that thermal electrons transit the wave in a ``sideloss'' time, tsl ~ Δ y/ve where ve is the electron thermal velocity. The quasi-steady distribution of trapped electrons and its self-consistent plasma wave are studied after the external field is turned off. For sufficiently short times and large enough wave amplitudes, the magnitude of the negative frequency shift from trapped electrons is a local function of electrostatic potential. Analysis and simulations are presented of the damping and trapped-electron-induced self-focusing (H. Rose PoP 12, 012318 (2005)) of the finite-amplitude EPW. In 1D simulations with SAPRISTI (Brunner and Valeo, PRL 93, 145003 (2004)), IAWs are created with an external traveling wave potential with full electron dynamics. For large IAW amplitudes, the contribution from IAW harmonics to the frequency shift is significant and larger than fluid theory predicts. Prepared by LLNL under Contract DE-AC52-07NA27344.

  6. High-order continuum Vlasov-Maxwell simulations of collisionless plasmas

    NASA Astrophysics Data System (ADS)

    Vogman, G. V.; Colella, P.; Shumlak, U.

    2015-11-01

    Plasma kinetic theory treats each constituent species as a probability distribution function in phase space. Numerically, the velocity dependence of the distribution function can be sampled discretely as in particle-in-cell methods, or represented smoothly as in continuum methods. Continuum methods for solving kinetic theory governing equations are advantageous in that they can be cast in conservation-law form, are not susceptible to noise, and can be implemented using high-order numerical methods, which provide enhanced solution accuracy. A fourth-order accurate finite volume method has been developed to solve the continuum kinetic Vlasov-Maxwell equation system in 2D2V phase space using the Chombo library. The evolving species are collisionless, and are coupled through electromagnetic fields. The algorithm is validated against theoretical predictions using benchmarks based on the Dory-Guest-Harris instability and the Harris current sheet. Extension of the algorithm to cylindrical coordinates and its application to axisymmetric plasma configurations like the Z-pinch are also presented.

  7. An Upwind Solver for the National Combustion Code

    NASA Technical Reports Server (NTRS)

    Sockol, Peter M.

    2011-01-01

    An upwind solver is presented for the unstructured grid National Combustion Code (NCC). The compressible Navier-Stokes equations with time-derivative preconditioning and preconditioned flux-difference splitting of the inviscid terms are used. First order derivatives are computed on cell faces and used to evaluate the shear stresses and heat fluxes. A new flux limiter uses these same first order derivatives in the evaluation of left and right states used in the flux-difference splitting. The k-epsilon turbulence equations are solved with the same second-order method. The new solver has been installed in a recent version of NCC and the resulting code has been tested successfully in 2D on two laminar cases with known solutions and one turbulent case with experimental data.

  8. Verification and Validation Studies for the LAVA CFD Solver

    NASA Technical Reports Server (NTRS)

    Moini-Yekta, Shayan; Barad, Michael F; Sozer, Emre; Brehm, Christoph; Housman, Jeffrey A.; Kiris, Cetin C.

    2013-01-01

    The verification and validation of the Launch Ascent and Vehicle Aerodynamics (LAVA) computational fluid dynamics (CFD) solver is presented. A modern strategy for verification and validation is described incorporating verification tests, validation benchmarks, continuous integration and version control methods for automated testing in a collaborative development environment. The purpose of the approach is to integrate the verification and validation process into the development of the solver and improve productivity. This paper uses the Method of Manufactured Solutions (MMS) for the verification of 2D Euler equations, 3D Navier-Stokes equations as well as turbulence models. A method for systematic refinement of unstructured grids is also presented. Verification using inviscid vortex propagation and flow over a flat plate is highlighted. Simulation results using laminar and turbulent flow past a NACA 0012 airfoil and ONERA M6 wing are validated against experimental and numerical data.

  9. Phase segregation via Vlasov-Boltzmann particle dynamics

    SciTech Connect

    Bastea, S

    1999-01-19

    In order to better understand and model the phase segregation of binary fluids we opted for a mesoscopic description that proves to be simplifying both conceptually and computationally. The system that we studied is a mixture of two kinds of particles. All particles interact with each other through strong short-range interactions modeled by hard spheres with the same mass and diameter. There is also a smooth long-range repulsion between particles of different kinds. At low overall densities and weak enough repulsion the natural dynamical description for this system is given in terms of two coupled, energy and momentum conserving Vlasov- Boltzmann equations, making it what we call a dynamical mean-field model. The computational scheme that we used is a combination of direct sim- ulation Monte Carlo (DSMC) and particle-in-the-cell (PIC) evolution, that inherits the efficiency and robustness of these two algorithms. The DSMC is a stochastic algorithm due to Bird that consistently incorporates the as- sumptions behind the Boltzmann equation into the particle dynamics. The method is essentially the following: the physical space is divided into a net- work of cells containing typically tens of particles and the free flow of the particles over a small time interval {Delta}t is followed by representative collisions among pairs of particles sharing the same cell. The typical linear dimension of a cell is a fraction of the mean free path between collisions. The PIC method for integrating the equations of motion was first used to deal with the l/r potential in plasma physics. It takes advantage of the simple form of the Vlasov potential, which is a product in Fourier space, by calculating the densities on a grid through some weighting, then the potentials and forces on the same grid, and finally interpolating the forces at the position of each particle. These two methods can be naturally brought together by replacing the free flow of the DSMC procedure by motion in the

  10. Parallelized CCHE2D flow model with CUDA Fortran on Graphics Process Units

    Technology Transfer Automated Retrieval System (TEKTRAN)

    This paper presents the CCHE2D implicit flow model parallelized using CUDA Fortran programming technique on Graphics Processing Units (GPUs). A parallelized implicit Alternating Direction Implicit (ADI) solver using Parallel Cyclic Reduction (PCR) algorithm on GPU is developed and tested. This solve...

  11. Two-Dimensional Ffowcs Williams/Hawkings Equation Solver

    NASA Technical Reports Server (NTRS)

    Lockard, David P.

    2005-01-01

    FWH2D is a Fortran 90 computer program that solves a two-dimensional (2D) version of the equation, derived by J. E. Ffowcs Williams and D. L. Hawkings, for sound generated by turbulent flow. FWH2D was developed especially for estimating noise generated by airflows around such approximately 2D airframe components as slats. The user provides input data on fluctuations of pressure, density, and velocity on some surface. These data are combined with information about the geometry of the surface to calculate histories of thickness and loading terms. These histories are fast-Fourier-transformed into the frequency domain. For each frequency of interest and each observer position specified by the user, kernel functions are integrated over the surface by use of the trapezoidal rule to calculate a pressure signal. The resulting frequency-domain signals are inverse-fast-Fourier-transformed back into the time domain. The output of the code consists of the time- and frequency-domain representations of the pressure signals at the observer positions. Because of its approximate nature, FWH2D overpredicts the noise from a finite-length (3D) component. The advantage of FWH2D is that it requires a fraction of the computation time of a 3D Ffowcs Williams/Hawkings solver.

  12. Acceleration of FDTD mode solver by high-performance computing techniques.

    PubMed

    Han, Lin; Xi, Yanping; Huang, Wei-Ping

    2010-06-21

    A two-dimensional (2D) compact finite-difference time-domain (FDTD) mode solver is developed based on wave equation formalism in combination with the matrix pencil method (MPM). The method is validated for calculation of both real guided and complex leaky modes of typical optical waveguides against the bench-mark finite-difference (FD) eigen mode solver. By taking advantage of the inherent parallel nature of the FDTD algorithm, the mode solver is implemented on graphics processing units (GPUs) using the compute unified device architecture (CUDA). It is demonstrated that the high-performance computing technique leads to significant acceleration of the FDTD mode solver with more than 30 times improvement in computational efficiency in comparison with the conventional FDTD mode solver running on CPU of a standard desktop computer. The computational efficiency of the accelerated FDTD method is in the same order of magnitude of the standard finite-difference eigen mode solver and yet require much less memory (e.g., less than 10%). Therefore, the new method may serve as an efficient, accurate and robust tool for mode calculation of optical waveguides even when the conventional eigen value mode solvers are no longer applicable due to memory limitation. PMID:20588502

  13. SpectralPlasmaSolver: a Spectral Code for Multiscale Simulations of Collisionless, Magnetized Plasmas

    NASA Astrophysics Data System (ADS)

    Vencels, Juris; Delzanno, Gian Luca; Manzini, Gianmarco; Markidis, Stefano; Peng, Ivy Bo; Roytershteyn, Vadim

    2016-05-01

    We present the design and implementation of a spectral code, called SpectralPlasmaSolver (SPS), for the solution of the multi-dimensional Vlasov-Maxwell equations. The method is based on a Hermite-Fourier decomposition of the particle distribution function. The code is written in Fortran and uses the PETSc library for solving the non-linear equations and preconditioning and the FFTW library for the convolutions. SPS is parallelized for shared- memory machines using OpenMP. As a verification example, we discuss simulations of the two-dimensional Orszag-Tang vortex problem and successfully compare them against a fully kinetic Particle-In-Cell simulation. An assessment of the performance of the code is presented, showing a significant improvement in the code running-time achieved by preconditioning, while strong scaling tests show a factor of 10 speed-up using 16 threads.

  14. Time-domain Raman analytical forward solvers.

    PubMed

    Martelli, Fabrizio; Binzoni, Tiziano; Sekar, Sanathana Konugolu Venkata; Farina, Andrea; Cavalieri, Stefano; Pifferi, Antonio

    2016-09-01

    A set of time-domain analytical forward solvers for Raman signals detected from homogeneous diffusive media is presented. The time-domain solvers have been developed for two geometries: the parallelepiped and the finite cylinder. The potential presence of a background fluorescence emission, contaminating the Raman signal, has also been taken into account. All the solvers have been obtained as solutions of the time dependent diffusion equation. The validation of the solvers has been performed by means of comparisons with the results of "gold standard" Monte Carlo simulations. These forward solvers provide an accurate tool to explore the information content encoded in the time-resolved Raman measurements. PMID:27607645

  15. Efficient Solvers for Linear Elasticity Problems Based on the Discrete Fourier Transform and TFETI Decomposition

    NASA Astrophysics Data System (ADS)

    Mocek, Lukas; Kozubek, Tomas

    2011-09-01

    The paper deals with the numerical solution of elliptic boundary value problems for 2D linear elasticity using the fictitious domain method in combination with the discrete Fourier transform and the FETI domain decomposition. We briefly mention the theoretical background of these methods, introduce resulting solvers, and demonstrate their efficiency on model benchmarks.

  16. A generalized gyrokinetic Poisson solver

    SciTech Connect

    Lin, Z.; Lee, W.W.

    1995-03-01

    A generalized gyrokinetic Poisson solver has been developed, which employs local operations in the configuration space to compute the polarization density response. The new technique is based on the actual physical process of gyrophase-averaging. It is useful for nonlocal simulations using general geometry equilibrium. Since it utilizes local operations rather than the global ones such as FFT, the new method is most amenable to massively parallel algorithms.

  17. On unstructured grids and solvers

    NASA Technical Reports Server (NTRS)

    Barth, T. J.

    1990-01-01

    The fundamentals and the state-of-the-art technology for unstructured grids and solvers are highlighted. Algorithms and techniques pertinent to mesh generation are discussed. It is shown that grid generation and grid manipulation schemes rely on fast multidimensional searching. Flow solution techniques for the Euler equations, which can be derived from the integral form of the equations are discussed. Sample calculations are also provided.

  18. Mitigation of numerical Cerenkov radiation and instability using a hybrid finite difference-FFT Maxwell solver and a local charge conserving current deposit

    NASA Astrophysics Data System (ADS)

    Yu, Peicheng; Xu, Xinlu; Tableman, Adam; Decyk, Viktor K.; Tsung, Frank S.; Fiuza, Frederico; Davidson, Asher; Vieira, Jorge; Fonseca, Ricardo A.; Lu, Wei; Silva, Luis O.; Mori, Warren B.

    2015-12-01

    A hybrid Maxwell solver for fully relativistic and electromagnetic (EM) particle-in-cell (PIC) codes is described. In this solver, the EM fields are solved in k space by performing an FFT in one direction, while using finite difference operators in the other direction(s). This solver eliminates the numerical Cerenkov radiation for particles moving in the preferred direction. Moreover, the numerical Cerenkov instability (NCI) induced by the relativistically drifting plasma and beam can be eliminated using this hybrid solver by applying strategies that are similar to those recently developed for pure FFT solvers. A current correction is applied for the charge conserving current deposit to ensure that Gauss's Law is satisfied. A theoretical analysis of the dispersion properties in vacuum and in a drifting plasma for the hybrid solver is presented, and compared with PIC simulations with good agreement obtained. This hybrid solver is applied to both 2D and 3D Cartesian and quasi-3D (in which the fields and current are decomposed into azimuthal harmonics) geometries. Illustrative results for laser wakefield accelerator simulation in a Lorentz boosted frame using the hybrid solver in the 2D Cartesian geometry are presented, and compared against results from 2D UPIC-EMMA simulation which uses a pure spectral Maxwell solver, and from OSIRIS 2D lab frame simulation using the standard Yee solver. Very good agreement is obtained which demonstrates the feasibility of using the hybrid solver for high fidelity simulation of relativistically drifting plasma with no evidence of the numerical Cerenkov instability.

  19. Study on longitudinal dispersion relation in one-dimensional relativistic plasma: Linear theory and Vlasov simulation

    SciTech Connect

    Zhang, H.; Wu, S. Z.; Zhou, C. T.; He, X. T.; Key Laboratory of HEDP of the Ministry of Education, CAPT, Peking University, Beijing 100871 ; Zhu, S. P.

    2013-09-15

    The dispersion relation of one-dimensional longitudinal plasma waves in relativistic homogeneous plasmas is investigated with both linear theory and Vlasov simulation in this paper. From the Vlasov-Poisson equations, the linear dispersion relation is derived for the proper one-dimensional Jüttner distribution. Numerically obtained linear dispersion relation as well as an approximate formula for plasma wave frequency in the long wavelength limit is given. The dispersion of longitudinal wave is also simulated with a relativistic Vlasov code. The real and imaginary parts of dispersion relation are well studied by varying wave number and plasma temperature. Simulation results are in agreement with established linear theory.

  20. Benchmarking transport solvers for fracture flow problems

    NASA Astrophysics Data System (ADS)

    Olkiewicz, Piotr; Dabrowski, Marcin

    2015-04-01

    Fracture flow may dominate in rocks with low porosity and it can accompany both industrial and natural processes. Typical examples of such processes are natural flows in crystalline rocks and industrial flows in geothermal systems or hydraulic fracturing. Fracture flow provides an important mechanism for transporting mass and energy. For example, geothermal energy is primarily transported by the flow of the heated water or steam rather than by the thermal diffusion. The geometry of the fracture network and the distribution of the mean apertures of individual fractures are the key parameters with regard to the fracture network transmissivity. Transport in fractures can occur through the combination of advection and diffusion processes like in the case of dissolved chemical components. The local distribution of the fracture aperture may play an important role for both flow and transport processes. In this work, we benchmark various numerical solvers for flow and transport processes in a single fracture in 2D and 3D. Fracture aperture distributions are generated by a number of synthetic methods. We examine a single-phase flow of an incompressible viscous Newtonian fluid in the low Reynolds number limit. Periodic boundary conditions are used and a pressure difference is imposed in the background. The velocity field is primarly found using the Stokes equations. We systematically compare the obtained velocity field to the results obtained by solving the Reynolds equation. This allows us to examine the impact of the aperture distribution on the permeability of the medium and the local velocity distribution for two different mathematical descriptions of the fracture flow. Furthermore, we analyse the impact of aperture distribution on the front characteristics such as the standard deviation and the fractal dimension for systems in 2D and 3D.

  1. AnisWave 2D

    2004-08-01

    AnisWave2D is a 2D finite-difference code for a simulating seismic wave propagation in fully anisotropic materials. The code is implemented to run in parallel over multiple processors and is fully portable. A mesh refinement algorithm has been utilized to allow the grid-spacing to be tailored to the velocity model, avoiding the over-sampling of high-velocity materials that usually occurs in fixed-grid schemes.

  2. Vlasov tokamak equilibria with shearad toroidal flow and anisotropic pressure

    NASA Astrophysics Data System (ADS)

    Throumoulopoulos, George; Kuiroukidis, Apostolos; Tasso, Henri

    2015-11-01

    By choosing appropriate deformed Maxwellian ion and electron distribution functions depending on the two particle constants of motion, i.e. the energy and toroidal angular momentum, we reduce the Vlasov axisymmetric equilibrium problem for quasineutral plasmas to a transcendental Grad-Shafranov-like equation. This equation is then solved numerically under the Dirichlet boundary condition for an analytically prescribed boundary possessing a lower X-point to construct tokamak equilibria with toroidal sheared ion flow and anisotropic pressure. Depending on the deformation of the distribution functions these steady states can have toroidal current densities either peaked on the magnetic axis or hollow. These two kinds of equilibria may be regarded as a bifurcation in connection with symmetry properties of the distribution functions on the magnetic axis. This work has received funding from (a) the National Programme for the Controlled Thermonuclear Fusion, Hellenic Republic, (b) Euratom research and training programme 2014-2018 under grant agreement No 633053.

  3. Vlasov tokamak equilibria with sheared toroidal flow and anisotropic pressure

    SciTech Connect

    Kuiroukidis, Ap; Throumoulopoulos, G. N.; Tasso, H.

    2015-08-15

    By choosing appropriate deformed Maxwellian ion and electron distribution functions depending on the two particle constants of motion, i.e., the energy and toroidal angular momentum, we reduce the Vlasov axisymmetric equilibrium problem for quasineutral plasmas to a transcendental Grad-Shafranov-like equation. This equation is then solved numerically under the Dirichlet boundary condition for an analytically prescribed boundary possessing a lower X-point to construct tokamak equilibria with toroidal sheared ion flow and anisotropic pressure. Depending on the deformation of the distribution functions, these steady states can have toroidal current densities either peaked on the magnetic axis or hollow. These two kinds of equilibria may be regarded as a bifurcation in connection with symmetry properties of the distribution functions on the magnetic axis.

  4. PROTON KINETIC EFFECTS IN VLASOV AND SOLAR WIND TURBULENCE

    SciTech Connect

    Servidio, S.; Valentini, F.; Perrone, D.; Veltri, P.; Osman, K. T.; Chapman, S.; Califano, F.; Matthaeus, W. H.

    2014-02-01

    Kinetic plasma processes are investigated in the framework of solar wind turbulence, employing hybrid Vlasov-Maxwell (HVM) simulations. Statistical analysis of spacecraft observation data relates proton temperature anisotropy T /T {sub ∥} and parallel plasma beta β{sub ∥}, where subscripts refer to the ambient magnetic field direction. Here, this relationship is recovered using an ensemble of HVM simulations. By varying plasma parameters, such as plasma beta and fluctuation level, the simulations explore distinct regions of the parameter space given by T /T {sub ∥} and β{sub ∥}, similar to solar wind sub-datasets. Moreover, both simulation and solar wind data suggest that temperature anisotropy is not only associated with magnetic intermittent events, but also with gradient-type structures in the flow and in the density. This connection between non-Maxwellian kinetic effects and various types of intermittency may be a key point for understanding the complex nature of plasma turbulence.

  5. A 2D finite element wave equation solver based on triangular base elements

    NASA Astrophysics Data System (ADS)

    Van Eester, D.; Lerche, E.; Evrard, M.

    2009-11-01

    A finite element method based on the subdivision of the physical domain in triangular sub-domains in which simple local 'areale' coordinates are adopted is explored. The advantage of the method is that it straightforwardly allows grid refinement in regions where higher precision is required. The plasma model was kept simple for this 'proof-of-principle' exercise. Rather than accounting for the actual differential or integro-differential dielectric tensor, its locally uniform plasma equivalent was adopted for 3 possible choices: the cold plasma response, the full hot Stix/Swanson plasma tensor retaining all orders in finite Larmor radius (FLR) and the more common hot tensor, truncated at terms of second order in the Larmor radius.

  6. A 2D finite element wave equation solver based on triangular base elements

    SciTech Connect

    Van Eester, D.; Lerche, E.; Evrard, M.

    2009-11-26

    A finite element method based on the subdivision of the physical domain in triangular sub-domains in which simple local 'areale' coordinates are adopted is explored. The advantage of the method is that it straightforwardly allows grid refinement in regions where higher precision is required. The plasma model was kept simple for this 'proof-of-principle' exercise. Rather than accounting for the actual differential or integro-differential dielectric tensor, its locally uniform plasma equivalent was adopted for 3 possible choices: the cold plasma response, the full hot Stix/Swanson plasma tensor retaining all orders in finite Larmor radius (FLR) and the more common hot tensor, truncated at terms of second order in the Larmor radius.

  7. A Hilbert-Vlasov code for the study of high-frequency plasma beatwave accelerator

    SciTech Connect

    Ghizzo, A.; Bertrand, P.; Begue, M.L.; Johnston, T.W.; Shoucri, M.

    1996-04-01

    High-frequency beatwave simulations relevant to the University of California at Los Angeles (UCLA) experiment with relativistic eulerian hybrid Vlasov code are presented. These Hilbert-Vlasov simulations revealed a rich variety of phenomena associated with the fast particle dynamics induced by beatwave experiment for a high ratio of driver frequency to plasma frequency {omega}{sub pump}/{omega}{sub pump} {approx} 33. The present model allows one to extend detailed modeling to frequency ratios greater than the current practical maximum of 10 or so, for Vlasov or particle-in-cell (PIC) codes, by replacing the Maxwell equations by mode equations for the electromagnetic Vlasov code. Numerical results, including beat frequency chirping (i.e., pump frequency linearly decreasing with time), show that the amplitude limit due to relativistic detuning can be enhanced with accelerated particles up to the ultrarelativistic energies with a high-acceleration gradient of more than 25 GeV/m.

  8. Multi-moment advection scheme in three dimension for Vlasov simulations of magnetized plasma

    SciTech Connect

    Minoshima, Takashi; Matsumoto, Yosuke; Amano, Takanobu

    2013-03-01

    We present an extension of the multi-moment advection scheme [T. Minoshima, Y. Matsumoto, T. Amano, Multi-moment advection scheme for Vlasov simulations, Journal of Computational Physics 230 (2011) 6800–6823] to the three-dimensional case, for full electromagnetic Vlasov simulations of magnetized plasma. The scheme treats not only point values of a profile but also its zeroth to second order piecewise moments as dependent variables, and advances them on the basis of their governing equations. Similar to the two-dimensional scheme, the three-dimensional scheme can accurately solve the solid body rotation problem of a gaussian profile with little numerical dispersion or diffusion. This is a very important property for Vlasov simulations of magnetized plasma. We apply the scheme to electromagnetic Vlasov simulations. Propagation of linear waves and nonlinear evolution of the electron temperature anisotropy instability are successfully simulated with a good accuracy of the energy conservation.

  9. Global Existence for the Vlasov-Poisson System in Bounded Domains

    NASA Astrophysics Data System (ADS)

    Hwang, Hyung Ju; Velázquez, Juan J. L.

    2010-03-01

    In this paper we prove global existence for solutions of the Vlasov-Poisson system in convex bounded domains with specular boundary conditions and with a prescribed outward electrical field at the boundary.

  10. Finite Element Interface to Linear Solvers

    SciTech Connect

    Williams, Alan

    2005-03-18

    Sparse systems of linear equations arise in many engineering applications, including finite elements, finite volumes, and others. The solution of linear systems is often the most computationally intensive portion of the application. Depending on the complexity of problems addressed by the application, there may be no single solver capable of solving all of the linear systems that arise. This motivates the desire to switch an application from one solver librwy to another, depending on the problem being solved. The interfaces provided by solver libraries differ greatly, making it difficult to switch an application code from one library to another. The amount of library-specific code in an application Can be greatly reduced by having an abstraction layer between solver libraries and the application, putting a common "face" on various solver libraries. One such abstraction layer is the Finite Element Interface to Linear Solvers (EEl), which has seen significant use by finite element applications at Sandia National Laboratories and Lawrence Livermore National Laboratory.

  11. Derivation and classification of Vlasov-type and magnetohydrodynamics equations: Lagrange identity and Godunov's form

    NASA Astrophysics Data System (ADS)

    Vedenyapin, V. V.; Negmatov, M. A.

    2012-03-01

    We describe the derivation of the Vlasov-Maxwell equations from the Lagrangian of classical electrodynamics, from which magnetohydrodynamic-type equations are in turn derived. We consider both the relativistic and nonrelativistic cases: with zero temperature as the exact consequence of the Vlasov-Maxwell equations and with nonzero temperature as a zeroth-order approximation of the Maxwell-Chapman-Enskog method. We obtain the Lagrangian identities and their generalizations for these cases and compare them.

  12. Fast Poisson, Fast Helmholtz and fast linear elastostatic solvers on rectangular parallelepipeds

    SciTech Connect

    Wiegmann, A.

    1999-06-01

    FFT-based fast Poisson and fast Helmholtz solvers on rectangular parallelepipeds for periodic boundary conditions in one-, two and three space dimensions can also be used to solve Dirichlet and Neumann boundary value problems. For non-zero boundary conditions, this is the special, grid-aligned case of jump corrections used in the Explicit Jump Immersed Interface method. Fast elastostatic solvers for periodic boundary conditions in two and three dimensions can also be based on the FFT. From the periodic solvers we derive fast solvers for the new 'normal' boundary conditions and essential boundary conditions on rectangular parallelepipeds. The periodic case allows a simple proof of existence and uniqueness of the solutions to the discretization of normal boundary conditions. Numerical examples demonstrate the efficiency of the fast elastostatic solvers for non-periodic boundary conditions. More importantly, the fast solvers on rectangular parallelepipeds can be used together with the Immersed Interface Method to solve problems on non-rectangular domains with general boundary conditions. Details of this are reported in the preprint The Explicit Jump Immersed Interface Method for 2D Linear Elastostatics by the author.

  13. Analysis Tools for CFD Multigrid Solvers

    NASA Technical Reports Server (NTRS)

    Mineck, Raymond E.; Thomas, James L.; Diskin, Boris

    2004-01-01

    Analysis tools are needed to guide the development and evaluate the performance of multigrid solvers for the fluid flow equations. Classical analysis tools, such as local mode analysis, often fail to accurately predict performance. Two-grid analysis tools, herein referred to as Idealized Coarse Grid and Idealized Relaxation iterations, have been developed and evaluated within a pilot multigrid solver. These new tools are applicable to general systems of equations and/or discretizations and point to problem areas within an existing multigrid solver. Idealized Relaxation and Idealized Coarse Grid are applied in developing textbook-efficient multigrid solvers for incompressible stagnation flow problems.

  14. Stacking up 2D materials

    NASA Astrophysics Data System (ADS)

    Mayor, Louise

    2016-05-01

    Graphene might be the most famous example, but there are other 2D materials and compounds too. Louise Mayor explains how these atomically thin sheets can be layered together to create flexible “van der Waals heterostructures”, which could lead to a range of novel applications.

  15. MACSYMA's symbolic ordinary differential equation solver

    NASA Technical Reports Server (NTRS)

    Golden, J. P.

    1977-01-01

    The MACSYMA's symbolic ordinary differential equation solver ODE2 is described. The code for this routine is delineated, which is of interest because it is written in top-level MACSYMA language, and may serve as a good example of programming in that language. Other symbolic ordinary differential equation solvers are mentioned.

  16. KLU2 Direct Linear Solver Package

    2012-01-04

    KLU2 is a direct sparse solver for solving unsymmetric linear systems. It is related to the existing KLU solver, (in Amesos package and also as a stand-alone package from University of Florida) but provides template support for scalar and ordinal types. It uses a left looking LU factorization method.

  17. Vlasov simulation of the Rayleigh-Taylor instability

    NASA Astrophysics Data System (ADS)

    Wada, Yasutaka; Umeda, Takayuki; Machida, Shinobu

    2016-04-01

    The Rayleigh-Taylor instability (RTI) develops at an interface between two fluids with different densities when an external force is applied from a heavy fluid to a light fluid. The RTI is seen as a secondary instability of the Kelvin-Helmholtz instability taking place at the magnetopause. The spatial scale of the secondary RTI is on the ion inertial scale or ion gyro scale where non-MHD effects are important. In the previous studies of ideal MHD simulations, the RTI develops symmetrically in the horizontal axis. On the other hand, previous hall-MHD and Finite-Larmor-Radius (FLR)-MHD simulations have shown that the RTI develops asymmetrically in the horizontal axis. In this study, basic processes of non-MHD scale RTI are of interest. We perform four-dimensional Vlasov simulations of the RTI with two spatial dimensions and two velocity dimensions. We vary the ratio of the ion inertial length and/or the ion gyro radius to the spatial scale of the density gradient layer, and discuss the effect of the non-MHD effects on the linear growth and nonlinear development of the RTI.

  18. Vlasov Simulations of Ionospheric Heating Near Upper Hybrid Resonance

    NASA Astrophysics Data System (ADS)

    Najmi, A. C.; Eliasson, B. E.; Shao, X.; Milikh, G. M.; Papadopoulos, K.

    2014-12-01

    It is well-known that high-frequency (HF) heating of the ionosphere can excite field- aligned density striations (FAS) in the ionospheric plasma. Furthermore, in the neighborhood of various resonances, the pump wave can undergo parametric instabilities to produce a variety of electrostatic and electromagnetic waves. We have used a Vlasov simulation with 1-spatial dimension, 2-velocity dimensions, and 2-components of fields, to study the effects of ionospheric heating when the pump frequency is in the vicinity of the upper hybrid resonance, employing parameters currently available at ionospheric heaters such as HAARP. We have found that by seeding theplasma with a FAS of width ~20% of the simulation domain, ~10% depletion, and by applying a spatially uniform HF dipole pump electric field, the pump wave gives rise to a broad spectrum of density fluctuations as well as to upper hybrid and lower hybrid oscillating electric fields. We also observe collisionless bulk-heating of the electrons that varies non-linearly with the amplitude of the pump field.

  19. A robust multilevel simultaneous eigenvalue solver

    NASA Technical Reports Server (NTRS)

    Costiner, Sorin; Taasan, Shlomo

    1993-01-01

    Multilevel (ML) algorithms for eigenvalue problems are often faced with several types of difficulties such as: the mixing of approximated eigenvectors by the solution process, the approximation of incomplete clusters of eigenvectors, the poor representation of solution on coarse levels, and the existence of close or equal eigenvalues. Algorithms that do not treat appropriately these difficulties usually fail, or their performance degrades when facing them. These issues motivated the development of a robust adaptive ML algorithm which treats these difficulties, for the calculation of a few eigenvectors and their corresponding eigenvalues. The main techniques used in the new algorithm include: the adaptive completion and separation of the relevant clusters on different levels, the simultaneous treatment of solutions within each cluster, and the robustness tests which monitor the algorithm's efficiency and convergence. The eigenvectors' separation efficiency is based on a new ML projection technique generalizing the Rayleigh Ritz projection, combined with a technique, the backrotations. These separation techniques, when combined with an FMG formulation, in many cases lead to algorithms of O(qN) complexity, for q eigenvectors of size N on the finest level. Previously developed ML algorithms are less focused on the mentioned difficulties. Moreover, algorithms which employ fine level separation techniques are of O(q(sub 2)N) complexity and usually do not overcome all these difficulties. Computational examples are presented where Schrodinger type eigenvalue problems in 2-D and 3-D, having equal and closely clustered eigenvalues, are solved with the efficiency of the Poisson multigrid solver. A second order approximation is obtained in O(qN) work, where the total computational work is equivalent to only a few fine level relaxations per eigenvector.

  20. Improving Resource-Unaware SAT Solvers

    NASA Astrophysics Data System (ADS)

    Hölldobler, Steffen; Manthey, Norbert; Saptawijaya, Ari

    The paper discusses cache utilization in state-of-the-art SAT solvers. The aim of the study is to show how a resource-unaware SAT solver can be improved by utilizing the cache sensibly. The analysis is performed on a CDCL-based SAT solver using a subset of the industrial SAT Competition 2009 benchmark. For the analysis, the total cycles, the resource stall cycles, the L2 cache hits and the L2 cache misses are traced using sample based profiling. Based on the analysis, several techniques - some of which have not been used in SAT solvers so far - are proposed resulting in a combined speedup up to 83% without affecting the search path of the solver. The average speedup on the benchmark is 60%. The new techniques are also applied to MiniSAT2.0 improving its runtime by 20% on average.

  1. MOSS2D V1

    2001-01-31

    This software reduces the data from two-dimensional kSA MOS program, k-Space Associates, Ann Arbor, MI. Initial MOS data is recorded without headers in 38 columns, with one row of data per acquisition per lase beam tracked. The final MOSS 2d data file is reduced, graphed, and saved in a tab-delimited column format with headers that can be plotted in any graphing software.

  2. Belos Block Linear Solvers Package

    2004-03-01

    Belos is an extensible and interoperable framework for large-scale, iterative methods for solving systems of linear equations with multiple right-hand sides. The motivation for this framework is to provide a generic interface to a collection of algorithms for solving large-scale linear systems. Belos is interoperable because both the matrix and vectors are considered to be opaque objects--only knowledge of the matrix and vectors via elementary operations is necessary. An implementation of Balos is accomplished viamore » the use of interfaces. One of the goals of Belos is to allow the user flexibility in specifying the data representation for the matrix and vectors and so leverage any existing software investment. The algorithms that will be included in package are Krylov-based linear solvers, like Block GMRES (Generalized Minimal RESidual) and Block CG (Conjugate-Gradient).« less

  3. Galerkin CFD solvers for use in a multi-disciplinary suite for modeling advanced flight vehicles

    NASA Astrophysics Data System (ADS)

    Moffitt, Nicholas J.

    This work extends existing Galerkin CFD solvers for use in a multi-disciplinary suite. The suite is proposed as a means of modeling advanced flight vehicles, which exhibit strong coupling between aerodynamics, structural dynamics, controls, rigid body motion, propulsion, and heat transfer. Such applications include aeroelastics, aeroacoustics, stability and control, and other highly coupled applications. The suite uses NASA STARS for modeling structural dynamics and heat transfer. Aerodynamics, propulsion, and rigid body dynamics are modeled in one of the five CFD solvers below. Euler2D and Euler3D are Galerkin CFD solvers created at OSU by Cowan (2003). These solvers are capable of modeling compressible inviscid aerodynamics with modal elastics and rigid body motion. This work reorganized these solvers to improve efficiency during editing and at run time. Simple and efficient propulsion models were added, including rocket, turbojet, and scramjet engines. Viscous terms were added to the previous solvers to create NS2D and NS3D. The viscous contributions were demonstrated in the inertial and non-inertial frames. Variable viscosity (Sutherland's equation) and heat transfer boundary conditions were added to both solvers but not verified in this work. Two turbulence models were implemented in NS2D and NS3D: Spalart-Allmarus (SA) model of Deck, et al. (2002) and Menter's SST model (1994). A rotation correction term (Shur, et al., 2000) was added to the production of turbulence. Local time stepping and artificial dissipation were adapted to each model. CFDsol is a Taylor-Galerkin solver with an SA turbulence model. This work improved the time accuracy, far field stability, viscous terms, Sutherland?s equation, and SA model with NS3D as a guideline and added the propulsion models from Euler3D to CFDsol. Simple geometries were demonstrated to utilize current meshing and processing capabilities. Air-breathing hypersonic flight vehicles (AHFVs) represent the ultimate

  4. Nanoimprint lithography: 2D or not 2D? A review

    NASA Astrophysics Data System (ADS)

    Schift, Helmut

    2015-11-01

    Nanoimprint lithography (NIL) is more than a planar high-end technology for the patterning of wafer-like substrates. It is essentially a 3D process, because it replicates various stamp topographies by 3D displacement of material and takes advantage of the bending of stamps while the mold cavities are filled. But at the same time, it keeps all assets of a 2D technique being able to pattern thin masking layers like in photon- and electron-based traditional lithography. This review reports about 20 years of development of replication techniques at Paul Scherrer Institut, with a focus on 3D aspects of molding, which enable NIL to stay 2D, but at the same time enable 3D applications which are "more than Moore." As an example, the manufacturing of a demonstrator for backlighting applications based on thermally activated selective topography equilibration will be presented. This technique allows generating almost arbitrary sloped, convex and concave profiles in the same polymer film with dimensions in micro- and nanometer scale.

  5. Solar-wind turbulence at kinetic wavelengths: hybrid-Vlasov simulations

    NASA Astrophysics Data System (ADS)

    Valentini, F.; Califano, F.; Veltri, P.

    2010-12-01

    The cooling of the expanding solar wind is less efficient than expected. Scientists pointed out that the reason of this empirical evidence is related to the turbulent character of the solar wind plasma. The identification of the physical mechanism replacing "energy dissipation" in a collisionless magnetized plasma and establishing the link between macroscopic and microscopic scales would open a new scenario of broad importance in the field of turbulence and would have far-reaching implications in the problem of space plasma heating. Turbulent heating consists both in a progressive energy degradation and disorder increasing, going from large to small scales. The increase of disorder results into the production, through nonlinear interaction, of small-scale fluctuations involving not only the kinetic energy, as in the case of heat, but also the potential energy associated with electric and magnetic field fluctuations. To numerically analyze the kinetic effects on the evolution of the turbulent spectra in the solar wind, we make use of a recently developed numerical hybrid-Vlasov code [1], where the Vlasov equation is solved for the proton distribution function, while the electron response is taken into account through a generalized Ohm law that retains Hall effects and electron inertia terms. By performing multi-dimensional phase space simulations (1D or 2D in space and 3D in velocity) [2-5] on the last generation of supercomputers, we show that newly identified electrostatic (acoustic-like) modes, in longitudinal propagation with respect to the average magnetic field and driven by particle distribution functions far from local thermodynamic equilibrium, represent a privileged channel for turbulence to carry the energy towards small disordered scales. The system dynamics is analyzed for different electron to ion temperature ratios. Our numerical results provide a qualitative interpretation of a complex phenomenology ubiquitously recovered in many solar

  6. Coupling of a compressible vortex particle-mesh method with a near-body compressible discontinuous Galerkin solver

    NASA Astrophysics Data System (ADS)

    Parmentier, Philippe; Winckelmans, Gregoire; Chatelain, Philippe; Hillewaert, Koen

    2015-11-01

    A hybrid approach, coupling a compressible vortex particle-mesh method (CVPM, also with efficient Poisson solver) and a high order compressible discontinuous Galerkin Eulerian solver, is being developed in order to efficiently simulate flows past bodies; also in the transonic regime. The Eulerian solver is dedicated to capturing the anisotropic flow structures in the near-wall region whereas the CVPM solver is exploited away from the body and in the wake. An overlapping domain decomposition approach is used. The Eulerian solver, which captures the near-body region, also corrects the CVPM solution in that region at every time step. The CVPM solver, which captures the region away from the body and the wake, also provides the outer boundary conditions to the Eulerian solver. Because of the coupling, a boundary element method is also required for consistency. The approach is assessed on typical 2D benchmark cases. Supported by the Fund for Research Training in Industry and Agriculture (F.R.I.A.).

  7. Auroral Electrons Trapped and Lost: A Vlasov Simulation Study

    NASA Astrophysics Data System (ADS)

    Gunell, H.; Andersson, L.; De Keyser, J. M.; Mann, I.

    2014-12-01

    In the upward current region of the aurora, about two thirds of the total voltage between the auroral ionosphere and the equatorial magnetosphere can be concentrated in a stationary double layer at an altitude of about one earth radius, as Vlasov simulations of the plasma on a magnetic field line have shown (Gunell, et al., Ann. Geophys., 31, 1227-1240, 2013). We perform numerical experiments, changing the total voltage between the ionosphere and the equatorial magnetosphere during the course of the simulation. In the initial state, the total acceleration voltage is 3 kV and there is a double layer approximately 5000 km above the ionospheric end of the system. When the voltage is increased, electrons are trapped between the double layer and the magnetic mirror in a region of velocity space that initially was empty. When the voltage is decreased to its initial value these trapped electrons are released upwards. If the voltage is lowered first and then raised back to where it started, the newly trapped electrons remain trapped. As a consequence of the difference between the two cases, the electron pitch angle distribution, below the double layer, carries information about the recent history of the acceleration voltage. In both cases, most of the change in voltage, ΔV, is assumed by the double layer, in agreement with a study of Cluster data that could confine most of ΔV to altitudes below the spacecraft (Forsyth et al., JGR, 117, A12203, 2012). Hysteresis effects in the double layer position are seen in connection with the electron trapping. This work was supported by the Belgian Science Policy Office through the Solar-Terrestrial Centre of Excellence and by PRODEX/Cluster contract 13127/98/NL/VJ(IC)-PEA 90316.

  8. SUDOKU A STORY & A SOLVER

    SciTech Connect

    GARDNER, P.R.

    2006-04-01

    Sudoku, also known as Number Place, is a logic-based placement puzzle. The aim of the puzzle is to enter a numerical digit from 1 through 9 in each cell of a 9 x 9 grid made up of 3 x 3 subgrids (called ''regions''), starting with various digits given in some cells (the ''givens''). Each row, column, and region must contain only one instance of each numeral. Completing the puzzle requires patience and logical ability. Although first published in a U.S. puzzle magazine in 1979, Sudoku initially caught on in Japan in 1986 and attained international popularity in 2005. Last fall, after noticing Sudoku puzzles in some newspapers and magazines, I attempted a few just to see how hard they were. Of course, the difficulties varied considerably. ''Obviously'' one could use Trial and Error but all the advice was to ''Use Logic''. Thinking to flex, and strengthen, those powers, I began to tackle the puzzles systematically. That is, when I discovered a new tactical rule, I would write it down, eventually generating a list of ten or so, with some having overlap. They served pretty well except for the more difficult puzzles, but even then I managed to develop an additional three rules that covered all of them until I hit the Oregonian puzzle shown. With all of my rules, I could not seem to solve that puzzle. Initially putting my failure down to rapid mental fatigue (being unable to hold a sufficient quantity of information in my mind at one time), I decided to write a program to implement my rules and see what I had failed to notice earlier. The solver, too, failed. That is, my rules were insufficient to solve that particular puzzle. I happened across a book written by a fellow who constructs such puzzles and who claimed that, sometimes, the only tactic left was trial and error. With a trial and error routine implemented, my solver successfully completed the Oregonian puzzle, and has successfully solved every puzzle submitted to it since.

  9. ALPS - A LINEAR PROGRAM SOLVER

    NASA Technical Reports Server (NTRS)

    Viterna, L. A.

    1994-01-01

    Linear programming is a widely-used engineering and management tool. Scheduling, resource allocation, and production planning are all well-known applications of linear programs (LP's). Most LP's are too large to be solved by hand, so over the decades many computer codes for solving LP's have been developed. ALPS, A Linear Program Solver, is a full-featured LP analysis program. ALPS can solve plain linear programs as well as more complicated mixed integer and pure integer programs. ALPS also contains an efficient solution technique for pure binary (0-1 integer) programs. One of the many weaknesses of LP solvers is the lack of interaction with the user. ALPS is a menu-driven program with no special commands or keywords to learn. In addition, ALPS contains a full-screen editor to enter and maintain the LP formulation. These formulations can be written to and read from plain ASCII files for portability. For those less experienced in LP formulation, ALPS contains a problem "parser" which checks the formulation for errors. ALPS creates fully formatted, readable reports that can be sent to a printer or output file. ALPS is written entirely in IBM's APL2/PC product, Version 1.01. The APL2 workspace containing all the ALPS code can be run on any APL2/PC system (AT or 386). On a 32-bit system, this configuration can take advantage of all extended memory. The user can also examine and modify the ALPS code. The APL2 workspace has also been "packed" to be run on any DOS system (without APL2) as a stand-alone "EXE" file, but has limited memory capacity on a 640K system. A numeric coprocessor (80X87) is optional but recommended. The standard distribution medium for ALPS is a 5.25 inch 360K MS-DOS format diskette. IBM, IBM PC and IBM APL2 are registered trademarks of International Business Machines Corporation. MS-DOS is a registered trademark of Microsoft Corporation.

  10. SIERRA framework version 4 : solver services.

    SciTech Connect

    Williams, Alan B.

    2005-02-01

    Several SIERRA applications make use of third-party libraries to solve systems of linear and nonlinear equations, and to solve eigenproblems. The classes and interfaces in the SIERRA framework that provide linear system assembly services and access to solver libraries are collectively referred to as solver services. This paper provides an overview of SIERRA's solver services including the design goals that drove the development, and relationships and interactions among the various classes. The process of assembling and manipulating linear systems will be described, as well as access to solution methods and other operations.

  11. A New Class of Non-Linear, Finite-Volume Methods for Vlasov Simulation

    SciTech Connect

    Banks, J W; Hittinger, J A

    2009-11-24

    Methods for the numerical discretization of the Vlasov equation should efficiently use the phase space discretization and should introduce only enough numerical dissipation to promote stability and control oscillations. A new high-order, non-linear, finite-volume algorithm for the Vlasov equation that discretely conserves particle number and controls oscillations is presented. The method is fourth-order in space and time in well-resolved regions, but smoothly reduces to a third-order upwind scheme as features become poorly resolved. The new scheme is applied to several standard problems for the Vlasov-Poisson system, and the results are compared with those from other finite-volume approaches, including an artificial viscosity scheme and the Piecewise Parabolic Method. It is shown that the new scheme is able to control oscillations while preserving a higher degree of fidelity of the solution than the other approaches.

  12. The Mean-Field Limit for a Regularized Vlasov-Maxwell Dynamics

    NASA Astrophysics Data System (ADS)

    Golse, François

    2012-03-01

    The present work establishes the mean-field limit of a N-particle system towards a regularized variant of the relativistic Vlasov-Maxwell system, following the work of Braun-Hepp [Commun Math Phys 56:101-113, 1977] and Dobrushin [Func Anal Appl 13:115-123, 1979] for the Vlasov-Poisson system. The main ingredients in the analysis of this system are (a) a kinetic formulation of the Maxwell equations in terms of a distribution of electromagnetic potential in the momentum variable, (b) a regularization procedure for which an analogue of the total energy—i.e. the kinetic energy of the particles plus the energy of the electromagnetic field—is conserved and (c) an analogue of Dobrushin's stability estimate for the Monge-Kantorovich-Rubinstein distance between two solutions of the regularized Vlasov-Poisson dynamics adapted to retarded potentials.

  13. Euler solvers for transonic applications

    NASA Technical Reports Server (NTRS)

    Vanleer, Bram

    1989-01-01

    The 1980s may well be called the Euler era of applied aerodynamics. Computer codes based on discrete approximations of the Euler equations are now routinely used to obtain solutions of transonic flow problems in which the effects of entropy and vorticity production are significant. Such codes can even predict separation from a sharp edge, owing to the inclusion of artificial dissipation, intended to lend numerical stability to the calculation but at the same time enforcing the Kutta condition. One effect not correctly predictable by Euler codes is the separation from a smooth surface, and neither is viscous drag; for these some form of the Navier-Stokes equation is needed. It, therefore, comes as no surprise to observe that the Navier-Stokes has already begun before Euler solutions were fully exploited. Moreover, most numerical developments for the Euler equations are now constrained by the requirement that the techniques introduced, notably artificial dissipation, must not interfere with the new physics added when going from an Euler to a full Navier-Stokes approximation. In order to appreciate the contributions of Euler solvers to the understanding of transonic aerodynamics, it is useful to review the components of these computational tools. Space discretization, time- or pseudo-time marching and boundary procedures, the essential constituents are discussed. The subject of grid generation and grid adaptation to the solution are touched upon only where relevant. A list of unanswered questions and an outlook for the future are covered.

  14. ALPS: A Linear Program Solver

    NASA Technical Reports Server (NTRS)

    Ferencz, Donald C.; Viterna, Larry A.

    1991-01-01

    ALPS is a computer program which can be used to solve general linear program (optimization) problems. ALPS was designed for those who have minimal linear programming (LP) knowledge and features a menu-driven scheme to guide the user through the process of creating and solving LP formulations. Once created, the problems can be edited and stored in standard DOS ASCII files to provide portability to various word processors or even other linear programming packages. Unlike many math-oriented LP solvers, ALPS contains an LP parser that reads through the LP formulation and reports several types of errors to the user. ALPS provides a large amount of solution data which is often useful in problem solving. In addition to pure linear programs, ALPS can solve for integer, mixed integer, and binary type problems. Pure linear programs are solved with the revised simplex method. Integer or mixed integer programs are solved initially with the revised simplex, and the completed using the branch-and-bound technique. Binary programs are solved with the method of implicit enumeration. This manual describes how to use ALPS to create, edit, and solve linear programming problems. Instructions for installing ALPS on a PC compatible computer are included in the appendices along with a general introduction to linear programming. A programmers guide is also included for assistance in modifying and maintaining the program.

  15. Parallelizing alternating direction implicit solver on GPUs

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We present a parallel Alternating Direction Implicit (ADI) solver on GPUs. Our implementation significantly improves existing implementations in two aspects. First, we address the scalability issue of existing Parallel Cyclic Reduction (PCR) implementations by eliminating their hardware resource con...

  16. Exact momentum conservation laws for the gyrokinetic Vlasov-Poisson equations

    SciTech Connect

    Brizard, Alain J.; Tronko, Natalia

    2011-08-15

    The exact momentum conservation laws for the nonlinear gyrokinetic Vlasov-Poisson equations are derived by applying the Noether method on the gyrokinetic variational principle [A. J. Brizard, Phys. Plasmas 7, 4816 (2000)]. From the gyrokinetic Noether canonical-momentum equation derived by the Noether method, the gyrokinetic parallel momentum equation and other gyrokinetic Vlasov-moment equations are obtained. In addition, an exact gyrokinetic toroidal angular-momentum conservation law is derived in axisymmetric tokamak geometry, where the transport of parallel-toroidal momentum is related to the radial gyrocenter polarization, which includes contributions from the guiding-center and gyrocenter transformations.

  17. Linear stability of stationary solutions of the Vlasov-Poisson system in three dimensions

    SciTech Connect

    Batt, J.; Rein, G. . Mathematisches Inst.); Morrison, P.J. )

    1993-03-01

    Rigorous results on the stability of stationary solutions of the Vlasov-Poisson system are obtained in both the plasma physics and stellar dynamics contexts. It is proven that stationary solutions in the plasma physics (stellar dynamics) case are linearly stable if they are decreasing (increasing) functions of the local, i.e. particle, energy. The main tool in the analysis is the free energy of the system, a conserved quantity. In addition, an appropriate global existence result is proven for the linearized Vlasov-Poisson system and the existence of stationary solutions that satisfy the above stability condition is established.

  18. On axisymmetric and stationary solutions of the self-gravitating Vlasov system

    NASA Astrophysics Data System (ADS)

    Ames, Ellery; Andréasson, Håkan; Logg, Anders

    2016-08-01

    Axisymmetric and stationary solutions are constructed to the Einstein–Vlasov and Vlasov–Poisson systems. These solutions are constructed numerically, using finite element methods and a fixed-point iteration in which the total mass is fixed at each step. A variety of axisymmetric stationary solutions are exhibited, including solutions with toroidal, disk-like, spindle-like, and composite spatial density configurations, as are solutions with non-vanishing net angular momentum. In the case of toroidal solutions, we show for the first time, solutions of the Einstein–Vlasov system which contain ergoregions.

  19. Optimization of solver for gas flow modeling

    NASA Astrophysics Data System (ADS)

    Savichkin, D.; Dodulad, O.; Kloss, Yu

    2014-05-01

    The main purpose of the work is optimization of the solver for rarefied gas flow modeling based on the Boltzmann equation. Optimization method is based on SIMD extensions for ×86 processors. Computational code is profiled and manually optimized with SSE instructions. Heat flow, shock waves and Knudsen pump are modeled with optimized solver. Dependencies of computational time from mesh sizes and CPU capabilities are provided.

  20. FoSSI: the family of simplified solver interfaces for the rapid development of parallel numerical atmosphere and ocean models

    NASA Astrophysics Data System (ADS)

    Frickenhaus, Stephan; Hiller, Wolfgang; Best, Meike

    The portable software FoSSI is introduced that—in combination with additional free solver software packages—allows for an efficient and scalable parallel solution of large sparse linear equations systems arising in finite element model codes. FoSSI is intended to support rapid model code development, completely hiding the complexity of the underlying solver packages. In particular, the model developer need not be an expert in parallelization and is yet free to switch between different solver packages by simple modifications of the interface call. FoSSI offers an efficient and easy, yet flexible interface to several parallel solvers, most of them available on the web, such as PETSC, AZTEC, MUMPS, PILUT and HYPRE. FoSSI makes use of the concept of handles for vectors, matrices, preconditioners and solvers, that is frequently used in solver libraries. Hence, FoSSI allows for a flexible treatment of several linear equations systems and associated preconditioners at the same time, even in parallel on separate MPI-communicators. The second special feature in FoSSI is the task specifier, being a combination of keywords, each configuring a certain phase in the solver setup. This enables the user to control a solver over one unique subroutine. Furthermore, FoSSI has rather similar features for all solvers, making a fast solver intercomparison or exchange an easy task. FoSSI is a community software, proven in an adaptive 2D-atmosphere model and a 3D-primitive equation ocean model, both formulated in finite elements. The present paper discusses perspectives of an OpenMP-implementation of parallel iterative solvers based on domain decomposition methods. This approach to OpenMP solvers is rather attractive, as the code for domain-local operations of factorization, preconditioning and matrix-vector product can be readily taken from a sequential implementation that is also suitable to be used in an MPI-variant. Code development in this direction is in an advanced state under

  1. A parallel PCG solver for MODFLOW.

    PubMed

    Dong, Yanhui; Li, Guomin

    2009-01-01

    In order to simulate large-scale ground water flow problems more efficiently with MODFLOW, the OpenMP programming paradigm was used to parallelize the preconditioned conjugate-gradient (PCG) solver with in this study. Incremental parallelization, the significant advantage supported by OpenMP on a shared-memory computer, made the solver transit to a parallel program smoothly one block of code at a time. The parallel PCG solver, suitable for both MODFLOW-2000 and MODFLOW-2005, is verified using an 8-processor computer. Both the impact of compilers and different model domain sizes were considered in the numerical experiments. Based on the timing results, execution times using the parallel PCG solver are typically about 1.40 to 5.31 times faster than those using the serial one. In addition, the simulation results are the exact same as the original PCG solver, because the majority of serial codes were not changed. It is worth noting that this parallelizing approach reduces cost in terms of software maintenance because only a single source PCG solver code needs to be maintained in the MODFLOW source tree. PMID:19563427

  2. Finite Element Interface to Linear Solvers

    2005-03-18

    Sparse systems of linear equations arise in many engineering applications, including finite elements, finite volumes, and others. The solution of linear systems is often the most computationally intensive portion of the application. Depending on the complexity of problems addressed by the application, there may be no single solver capable of solving all of the linear systems that arise. This motivates the desire to switch an application from one solver librwy to another, depending on themore » problem being solved. The interfaces provided by solver libraries differ greatly, making it difficult to switch an application code from one library to another. The amount of library-specific code in an application Can be greatly reduced by having an abstraction layer between solver libraries and the application, putting a common "face" on various solver libraries. One such abstraction layer is the Finite Element Interface to Linear Solvers (EEl), which has seen significant use by finite element applications at Sandia National Laboratories and Lawrence Livermore National Laboratory.« less

  3. MICADO: Parallel implementation of a 2D-1D iterative algorithm for the 3D neutron transport problem in prismatic geometries

    SciTech Connect

    Fevotte, F.; Lathuiliere, B.

    2013-07-01

    The large increase in computing power over the past few years now makes it possible to consider developing 3D full-core heterogeneous deterministic neutron transport solvers for reference calculations. Among all approaches presented in the literature, the method first introduced in [1] seems very promising. It consists in iterating over resolutions of 2D and ID MOC problems by taking advantage of prismatic geometries without introducing approximations of a low order operator such as diffusion. However, before developing a solver with all industrial options at EDF, several points needed to be clarified. In this work, we first prove the convergence of this iterative process, under some assumptions. We then present our high-performance, parallel implementation of this algorithm in the MICADO solver. Benchmarking the solver against the Takeda case shows that the 2D-1D coupling algorithm does not seem to affect the spatial convergence order of the MOC solver. As for performance issues, our study shows that even though the data distribution is suited to the 2D solver part, the efficiency of the ID part is sufficient to ensure a good parallel efficiency of the global algorithm. After this study, the main remaining difficulty implementation-wise is about the memory requirement of a vector used for initialization. An efficient acceleration operator will also need to be developed. (authors)

  4. PSPIKE: A Parallel Hybrid Sparse Linear System Solver

    NASA Astrophysics Data System (ADS)

    Manguoglu, Murat; Sameh, Ahmed H.; Schenk, Olaf

    The availability of large-scale computing platforms comprised of tens of thousands of multicore processors motivates the need for the next generation of highly scalable sparse linear system solvers. These solvers must optimize parallel performance, processor (serial) performance, as well as memory requirements, while being robust across broad classes of applications and systems. In this paper, we present a new parallel solver that combines the desirable characteristics of direct methods (robustness) and effective iterative solvers (low computational cost), while alleviating their drawbacks (memory requirements, lack of robustness). Our proposed hybrid solver is based on the general sparse solver PARDISO, and the “Spike” family of hybrid solvers. The resulting algorithm, called PSPIKE, is as robust as direct solvers, more reliable than classical preconditioned Krylov subspace methods, and much more scalable than direct sparse solvers. We support our performance and parallel scalability claims using detailed experimental studies and comparison with direct solvers, as well as classical preconditioned Krylov methods.

  5. Lagrangian formulation of the one-dimensional Vlasov equation. [in plasma physics

    NASA Technical Reports Server (NTRS)

    Lewak, G. J.

    1974-01-01

    A new formulation of the one-dimensional Vlasov equation is derived which is analogous to the Kalman-transformed cold-plasma equations. The equations are shown to yield nonsecular, nonlinear approximations to a source or boundary-value problem. It is suggested that the formulation may have other applications in nonlinear plasma theory.

  6. Landau Damping in Sobolev Spaces for the Vlasov-HMF Model

    NASA Astrophysics Data System (ADS)

    Faou, Erwan; Rousset, Frédéric

    2016-02-01

    We consider the Vlasov-HMF (Hamiltonian Mean-Field) model. We consider solutions starting in a small Sobolev neighborhood of a spatially homogeneous state satisfying a linearized stability criterion (Penrose criterion). We prove that these solutions exhibit a scattering behavior to a modified state, which implies a nonlinear Landau damping effect with polynomial rate of damping.

  7. Numerical study of a Vlasov equation for systems with interacting particles

    SciTech Connect

    Herrera, Dianela; Curilef, Sergio

    2015-03-10

    We solve numerically the Vlasov equation for the self-gravitating sheet model. We used the method introduced by Cheng and Knorr [Comput Phys 22, 330-351 (1976)]. We discuss the quasi-stationary state for some thermodynamical observables, specifically the kinetic energy, whose trend is depicted for early evolution.

  8. Ill-Posedness of the Hydrostatic Euler and Singular Vlasov Equations

    NASA Astrophysics Data System (ADS)

    Han-Kwan, Daniel; Nguyen, Toan T.

    2016-09-01

    In this paper, we develop an abstract framework to establish ill-posedness, in the sense of Hadamard, for some nonlocal PDEs displaying unbounded unstable spectra. We apply this to prove the ill-posedness for the hydrostatic Euler equations as well as for the kinetic incompressible Euler equations and the Vlasov-Dirac-Benney system.

  9. The Vlasov-Maxwell-Boltzmann system with a uniform ionic background near Maxwellians

    NASA Astrophysics Data System (ADS)

    Lei, Yuanjie; Zhao, Huijiang

    2016-02-01

    The two-species Vlasov-Maxwell-Boltzmann system is an important model for plasma physics describing the time evolution of dilute charged particles consisting of electrons and ions under the influence of the self-consistent internally generated Lorentz forces. In physical situations the ion mass is usually much larger than the electron mass so that the electrons move much faster than the ions. Thus, the ions are often described by a fixed ion background and only the electrons move. For such a simple case, the two-species Vlasov-Maxwell-Boltzmann system is reduced to the one-species Vlasov-Maxwell-Boltzmann system. Although the one-species Vlasov-Maxwell-Boltzmann system is a simplified model of the two-species Vlasov-Maxwell-Boltzmann system, its global well-posedness theory near a given global Maxwellian in the perturbative framework is more difficult than the two-species case, which is partially due to the slow-decay of the electromagnetic field and up to now, the problem on the construction of global in time solutions near a given global Maxwellian in the perturbative framework for the Cauchy problem of the one-species Vlasov-Maxwell-Boltzmann system with cutoff non-hard sphere intermolecular collisions remains unsolved. It is shown in this paper that the Cauchy problem of the one-species Vlasov-Maxwell-Boltzmann system with cutoff non-hard sphere intermolecular collisions including the cutoff inverse power law potentials is globally well-posed provided that the perturbative initial data satisfies certain regularity, smallness, and integrability conditions. Our analysis is based on a new time-velocity weighted energy method with two key technical parts: one is to introduce the exponentially weighted estimates into the cutoff Boltzmann operator and the other is to design a delicate temporal energy X (t)-norm to obtain its uniform bound. As a by-product of our analysis, we can also deduce certain temporal decay estimates on the global solutions constructed above

  10. Multi-dimensional, fully-implicit, spectral method for the Vlasov-Maxwell equations with exact conservation laws in discrete form

    NASA Astrophysics Data System (ADS)

    Delzanno, G. L.

    2015-11-01

    A spectral method for the numerical solution of the multi-dimensional Vlasov-Maxwell equations is presented. The plasma distribution function is expanded in Fourier (for the spatial part) and Hermite (for the velocity part) basis functions, leading to a truncated system of ordinary differential equations for the expansion coefficients (moments) that is discretized with an implicit, second order accurate Crank-Nicolson time discretization. The discrete non-linear system is solved with a preconditioned Jacobian-Free Newton-Krylov method. It is shown analytically that the Fourier-Hermite method features exact conservation laws for total mass, momentum and energy in discrete form. Standard tests involving plasma waves and the whistler instability confirm the validity of the conservation laws numerically. The whistler instability test also shows that we can step over the fastest time scale in the system without incurring in numerical instabilities. Some preconditioning strategies are presented, showing that the number of linear iterations of the Krylov solver can be drastically reduced and a significant gain in performance can be obtained.

  11. New iterative solvers for the NAG Libraries

    SciTech Connect

    Salvini, S.; Shaw, G.

    1996-12-31

    The purpose of this paper is to introduce the work which has been carried out at NAG Ltd to update the iterative solvers for sparse systems of linear equations, both symmetric and unsymmetric, in the NAG Fortran 77 Library. Our current plans to extend this work and include it in our other numerical libraries in our range are also briefly mentioned. We have added to the Library the new Chapter F11, entirely dedicated to sparse linear algebra. At Mark 17, the F11 Chapter includes sparse iterative solvers, preconditioners, utilities and black-box routines for sparse symmetric (both positive-definite and indefinite) linear systems. Mark 18 will add solvers, preconditioners, utilities and black-boxes for sparse unsymmetric systems: the development of these has already been completed.

  12. Using SPARK as a Solver for Modelica

    SciTech Connect

    Wetter, Michael; Wetter, Michael; Haves, Philip; Moshier, Michael A.; Sowell, Edward F.

    2008-06-30

    Modelica is an object-oriented acausal modeling language that is well positioned to become a de-facto standard for expressing models of complex physical systems. To simulate a model expressed in Modelica, it needs to be translated into executable code. For generating run-time efficient code, such a translation needs to employ algebraic formula manipulations. As the SPARK solver has been shown to be competitive for generating such code but currently cannot be used with the Modelica language, we report in this paper how SPARK's symbolic and numerical algorithms can be implemented in OpenModelica, an open-source implementation of a Modelica modeling and simulation environment. We also report benchmark results that show that for our air flow network simulation benchmark, the SPARK solver is competitive with Dymola, which is believed to provide the best solver for Modelica.

  13. Verification of continuum drift kinetic equation solvers in NIMROD

    NASA Astrophysics Data System (ADS)

    Held, E. D.; Kruger, S. E.; Ji, J.-Y.; Belli, E. A.; Lyons, B. C.

    2015-03-01

    Verification of continuum solutions to the electron and ion drift kinetic equations (DKEs) in NIMROD [C. R. Sovinec et al., J. Comp. Phys. 195, 355 (2004)] is demonstrated through comparison with several neoclassical transport codes, most notably NEO [E. A. Belli and J. Candy, Plasma Phys. Controlled Fusion 54, 015015 (2012)]. The DKE solutions use NIMROD's spatial representation, 2D finite-elements in the poloidal plane and a 1D Fourier expansion in toroidal angle. For 2D velocity space, a novel 1D expansion in finite elements is applied for the pitch angle dependence and a collocation grid is used for the normalized speed coordinate. The full, linearized Coulomb collision operator is kept and shown to be important for obtaining quantitative results. Bootstrap currents, parallel ion flows, and radial particle and heat fluxes show quantitative agreement between NIMROD and NEO for a variety of tokamak equilibria. In addition, velocity space distribution function contours for ions and electrons show nearly identical detailed structure and agree quantitatively. A Θ-centered, implicit time discretization and a block-preconditioned, iterative linear algebra solver provide efficient electron and ion DKE solutions that ultimately will be used to obtain closures for NIMROD's evolving fluid model.

  14. Verification of continuum drift kinetic equation solvers in NIMROD

    SciTech Connect

    Held, E. D.; Ji, J.-Y.; Kruger, S. E.; Belli, E. A.; Lyons, B. C.

    2015-03-15

    Verification of continuum solutions to the electron and ion drift kinetic equations (DKEs) in NIMROD [C. R. Sovinec et al., J. Comp. Phys. 195, 355 (2004)] is demonstrated through comparison with several neoclassical transport codes, most notably NEO [E. A. Belli and J. Candy, Plasma Phys. Controlled Fusion 54, 015015 (2012)]. The DKE solutions use NIMROD's spatial representation, 2D finite-elements in the poloidal plane and a 1D Fourier expansion in toroidal angle. For 2D velocity space, a novel 1D expansion in finite elements is applied for the pitch angle dependence and a collocation grid is used for the normalized speed coordinate. The full, linearized Coulomb collision operator is kept and shown to be important for obtaining quantitative results. Bootstrap currents, parallel ion flows, and radial particle and heat fluxes show quantitative agreement between NIMROD and NEO for a variety of tokamak equilibria. In addition, velocity space distribution function contours for ions and electrons show nearly identical detailed structure and agree quantitatively. A Θ-centered, implicit time discretization and a block-preconditioned, iterative linear algebra solver provide efficient electron and ion DKE solutions that ultimately will be used to obtain closures for NIMROD's evolving fluid model.

  15. NKG2D ligands as therapeutic targets

    PubMed Central

    Spear, Paul; Wu, Ming-Ru; Sentman, Marie-Louise; Sentman, Charles L.

    2013-01-01

    The Natural Killer Group 2D (NKG2D) receptor plays an important role in protecting the host from infections and cancer. By recognizing ligands induced on infected or tumor cells, NKG2D modulates lymphocyte activation and promotes immunity to eliminate ligand-expressing cells. Because these ligands are not widely expressed on healthy adult tissue, NKG2D ligands may present a useful target for immunotherapeutic approaches in cancer. Novel therapies targeting NKG2D ligands for the treatment of cancer have shown preclinical success and are poised to enter into clinical trials. In this review, the NKG2D receptor and its ligands are discussed in the context of cancer, infection, and autoimmunity. In addition, therapies targeting NKG2D ligands in cancer are also reviewed. PMID:23833565

  16. Steady potential solver for unsteady aerodynamic analyses

    NASA Technical Reports Server (NTRS)

    Hoyniak, Dan

    1994-01-01

    Development of a steady flow solver for use with LINFLO was the objective of this report. The solver must be compatible with LINFLO, be composed of composite mesh, and have transonic capability. The approaches used were: (1) steady flow potential equations written in nonconservative form; (2) Newton's Method; (3) implicit, least-squares, interpolation method to obtain finite difference equations; and (4) matrix inversion routines from LINFLO. This report was given during the NASA LeRC Workshop on Forced Response in Turbomachinery in August of 1993.

  17. Multigrid in energy preconditioner for Krylov solvers

    SciTech Connect

    Slaybaugh, R.N.; Evans, T.M.; Davidson, G.G.; Wilson, P.P.H.

    2013-06-01

    We have added a new multigrid in energy (MGE) preconditioner to the Denovo discrete-ordinates radiation transport code. This preconditioner takes advantage of a new multilevel parallel decomposition. A multigroup Krylov subspace iterative solver that is decomposed in energy as well as space-angle forms the backbone of the transport solves in Denovo. The space-angle-energy decomposition facilitates scaling to hundreds of thousands of cores. The multigrid in energy preconditioner scales well in the energy dimension and significantly reduces the number of Krylov iterations required for convergence. This preconditioner is well-suited for use with advanced eigenvalue solvers such as Rayleigh Quotient Iteration and Arnoldi.

  18. ODE System Solver W. Krylov Iteration & Rootfinding

    SciTech Connect

    Hindmarsh, Alan C.

    1991-09-09

    LSODKR is a new initial value ODE solver for stiff and nonstiff systems. It is a variant of the LSODPK and LSODE solvers, intended mainly for large stiff systems. The main differences between LSODKR and LSODE are the following: (a) for stiff systems, LSODKR uses a corrector iteration composed of Newton iteration and one of four preconditioned Krylov subspace iteration methods. The user must supply routines for the preconditioning operations, (b) Within the corrector iteration, LSODKR does automatic switching between functional (fixpoint) iteration and modified Newton iteration, (c) LSODKR includes the ability to find roots of given functions of the solution during the integration.

  19. ODE System Solver W. Krylov Iteration & Rootfinding

    1991-09-09

    LSODKR is a new initial value ODE solver for stiff and nonstiff systems. It is a variant of the LSODPK and LSODE solvers, intended mainly for large stiff systems. The main differences between LSODKR and LSODE are the following: (a) for stiff systems, LSODKR uses a corrector iteration composed of Newton iteration and one of four preconditioned Krylov subspace iteration methods. The user must supply routines for the preconditioning operations, (b) Within the corrector iteration,more » LSODKR does automatic switching between functional (fixpoint) iteration and modified Newton iteration, (c) LSODKR includes the ability to find roots of given functions of the solution during the integration.« less

  20. Wave Speeds, Riemann Solvers and Artificial Viscosity

    SciTech Connect

    Rider, W.J.

    1999-07-18

    A common perspective on the numerical solution of the equation Euler equations for shock physics is examined. The common viewpoint is based upon the selection of nonlinear wavespeeds upon which the dissipation (implicit or explicit) is founded. This perspective shows commonality between Riemann solver based method (i.e. Godunov-type) and artificial viscosity (i.e. von Neumann-Richtmyer). As an example we derive an improved nonlinear viscous stabilization of a Richtmyer-Lax-Wendroff method. Additionally, we will define a form of classical artificial viscosity based upon the HLL Riemann solver.

  1. Two-dimensional flux-corrected transport solver for convectively dominated flows

    SciTech Connect

    Baer, M.R.; Gross, R.J.

    1986-01-01

    A numerical technique designed to solve a wide class of convectively dominated flow problems is presented. An attractive feature of the technique is its ability to resolve the behavior of field quantities possessing large gradients and/or shocks. The method is a finite-difference technique known as flux-corrected transport (FCT) that maintains four important numerical considerations - stability, accuracy, monotonicity, and conservation. The theory and methodology of two-dimensional FCT is presented. The method is applied in demonstrative example calculations of a 2-D Riemann problem with known exact solutions and to the Euler equations in a study of classical Rayleigh-Taylor and Kelvin-Helmholtz instability problems. The FCT solver has been vectorized for execution on the Cray 1S - a typical call with a 50 by 50 mesh requires about 0.00428 cpu seconds of execution time per call to the routine. Additionally, we have maintained a modular structure for the solver that eases its implementation. Fortran listings of two versions of the 2-D FCT solvers are appended with a driver main program illustrating the call sequence for the modules. 59 refs., 49 figs.

  2. Implications of the Electrostatic Approximation in the Beam Frame on the Nonlinear Vlasov-Maxwell Equations for Intense Beam Propagation

    SciTech Connect

    Ronald C. Davidson; W. Wei-li Lee; Hong Qin; Edward Startsev

    2001-11-08

    This paper develops a clear procedure for solving the nonlinear Vlasov-Maxwell equations for a one-component intense charged particle beam or finite-length charge bunch propagating through a cylindrical conducting pipe (radius r = r(subscript)w = const.), and confined by an applied focusing force. In particular, the nonlinear Vlasov-Maxwell equations are Lorentz-transformed to the beam frame ('primed' variables) moving with axial velocity relative to the laboratory. In the beam frame, the particle motions are nonrelativistic for the applications of practical interest, already a major simplification. Then, in the beam frame, we make the electrostatic approximation which fully incorporates beam space-charge effects, but neglects any fast electromagnetic processes with transverse polarization (e.g., light waves). The resulting Vlasov-Maxwell equations are then Lorentz-transformed back to the laboratory frame, and properties of the self-generated fields and resulting nonlinear Vlasov-Maxwell equations in the laboratory frame are discussed.

  3. Efficiency of Pareto joint inversion of 2D geophysical data using global optimization methods

    NASA Astrophysics Data System (ADS)

    Miernik, Katarzyna; Bogacz, Adrian; Kozubal, Adam; Danek, Tomasz; Wojdyła, Marek

    2016-04-01

    Pareto joint inversion of two or more sets of data is a promising new tool of modern geophysical exploration. In the first stage of our investigation we created software enabling execution of forward solvers of two geophysical methods (2D magnetotelluric and gravity) as well as inversion with possibility of constraining solution with seismic data. In the algorithm solving MT forward solver Helmholtz's equations, finite element method and Dirichlet's boundary conditions were applied. Gravity forward solver was based on Talwani's algorithm. To limit dimensionality of solution space we decided to describe model as sets of polygons, using Sharp Boundary Interface (SBI) approach. The main inversion engine was created using Particle Swarm Optimization (PSO) algorithm adapted to handle two or more target functions and to prevent acceptance of solutions which are non - realistic or incompatible with Pareto scheme. Each inversion run generates single Pareto solution, which can be added to Pareto Front. The PSO inversion engine was parallelized using OpenMP standard, what enabled execution code for practically unlimited amount of threads at once. Thereby computing time of inversion process was significantly decreased. Furthermore, computing efficiency increases with number of PSO iterations. In this contribution we analyze the efficiency of created software solution taking under consideration details of chosen global optimization engine used as a main joint minimization engine. Additionally we study the scale of possible decrease of computational time caused by different methods of parallelization applied for both forward solvers and inversion algorithm. All tests were done for 2D magnetotelluric and gravity data based on real geological media. Obtained results show that even for relatively simple mid end computational infrastructure proposed solution of inversion problem can be applied in practice and used for real life problems of geophysical inversion and interpretation.

  4. Frequency Domain Modelling by a Direct-Iterative Solver: A Space and Wavelet Approach

    NASA Astrophysics Data System (ADS)

    Hustedt, B.; Operto, S.; Virieux, J.

    2002-12-01

    Seismic forward modelling of wave propagation phenomena in complex rheologic media using a frequency domain finite-difference (FDFD) technique is of special interest for multisource experiments and waveform inversion schemes, because the complete wavefield solution can be computed in a fast and efficient way. FDFD modelling requires the inversion of an extremely large matrix-equation A x x = b, by either a direct or an iterative solver. The direct solver computes an effective inverse of A, called LU factorization. The main handicap is additional computer memory required for storing matrix fill-in coefficients, that are created during the factorization process. Iterative solvers are not limited by memory constraints (additional coefficients), but the convergence depends on a good initial solution difficult to guess before hand. For both solvers, available computer resources has limited wide-spread FDFD modelling applications to mainly two-dimensional (2D) and rarely three-dimensional (3D) problems. In order to overcome these limits, we propose the combination of a direct solver and an iterative solver, called Direct-Iterative Solver (DIS). The direct solver is used to compute an exact wavefield solution on a coarse discretized grid. We use a multifrontal decomposition technique. The coarse-grid size is determined preliminary by limits of the available computer resources, rather than by the wave simulation problem. We project the exact coarse-grid solution on a fine-grid, and use it as an initial solution for an iterative solver, which convergences to an acceptable approximation of the desired fine-grid solution. Two different DIS schemes have been implemented and tested for numerical accuracy and computational performance. The first approach, called the Direct-Iterative-Space Solver (DISS), projects the coarse-grid solution on the fine-grid by a bilinear interpolation. Though the interpolated solution nicely approximates the desired fine-grid solution, still for

  5. Perspectives for spintronics in 2D materials

    NASA Astrophysics Data System (ADS)

    Han, Wei

    2016-03-01

    The past decade has been especially creative for spintronics since the (re)discovery of various two dimensional (2D) materials. Due to the unusual physical characteristics, 2D materials have provided new platforms to probe the spin interaction with other degrees of freedom for electrons, as well as to be used for novel spintronics applications. This review briefly presents the most important recent and ongoing research for spintronics in 2D materials.

  6. Courant Number and Mach Number Insensitive CE/SE Euler Solvers

    NASA Technical Reports Server (NTRS)

    Chang, Sin-Chung

    2005-01-01

    It has been known that the space-time CE/SE method can be used to obtain ID, 2D, and 3D steady and unsteady flow solutions with Mach numbers ranging from 0.0028 to 10. However, it is also known that a CE/SE solution may become overly dissipative when the Mach number is very small. As an initial attempt to remedy this weakness, new 1D Courant number and Mach number insensitive CE/SE Euler solvers are developed using several key concepts underlying the recent successful development of Courant number insensitive CE/SE schemes. Numerical results indicate that the new solvers are capable of resolving crisply a contact discontinuity embedded in a flow with the maximum Mach number = 0.01.

  7. High Resolution Euler Solvers Based on the Space-Time Conservation Element and Solution Element Method

    NASA Technical Reports Server (NTRS)

    Wang, Xiao-Yen; Chow, Chuen-Yen; Chang, Sin-Chung

    1996-01-01

    The I-D, quasi I-D and 2-D Euler solvers based on the method of space-time conservation element and solution element are used to simulate various flow phenomena including shock waves, Mach stem, contact surface, expansion waves, and their intersections and reflections. Seven test problems are solved to demonstrate the capability of this method for handling unsteady compressible flows in various configurations. Numerical results so obtained are compared with exact solutions and/or numerical solutions obtained by schemes based on other established computational techniques. Comparisons show that the present Euler solvers can generate highly accurate numerical solutions to complex flow problems in a straightforward manner without using any ad hoc techniques in the scheme.

  8. Vectorization of a 2D-1D Iterative Algorithm for the 3D Neutron Transport Problem in Prismatic Geometries

    NASA Astrophysics Data System (ADS)

    Moustafa, Salli; Févotte, François; Lathuilière, Bruno; Plagne, Laurent

    2014-06-01

    The past few years have been marked by a noticeable increase in the interest in 3D whole-core heterogeneous deterministic neutron transport solvers for reference calculations. Due to the extremely large problem sizes tackled by such solvers, they need to use adapted numerical methods and need to be efficiently implemented to take advantage of the full computing power of modern systems. As for numerical methods, one possible approach consists in iterating over resolutions of 2D and 1D MOC problems by taking advantage of prismatic geometries. The MICADO solver, developed at EDF R&D, is a parallel implementation of such a method in distributed and shared memory systems. However it is currently unable to use SIMD vectorization to leverage the full computing power of modern CPUs. In this paper, we describe our first effort to support vectorization in MICADO, typically targeting Intel© SSE CPUs. Both the 2D and 1D algorithms are vectorized, allowing for high expected speedups for the whole spatial solver. We present benchmark computations, which show nearly optimal speedups for our vectorized implementation on the TAKEDA case.

  9. The properties of the first equation of the Vlasov chain of equations

    NASA Astrophysics Data System (ADS)

    Perepelkin, E. E.; Sadovnikov, B. I.; Inozemtseva, N. G.

    2015-05-01

    A derivation of the first Vlasov equation as a well-known Schrödinger equation for the probabilistic description of a system and families of the classic diffusion equations and heat conduction for the deterministic description of physical systems was inferred. A physical meaning of the phase of the wave function which is a scalar potential of the probabilistic flow velocity is demonstrated. Occurrence of the velocity potential vortex component leads to the Pauli equation for one of the spinar components. A scheme for the construction of the Schrödinger equation solution from the Vlasov equation solution and vice-versa is shown. A process of introduction of the potential to the Schrödinger equation and its interpretation are given. The analysis of the potential properties gives us the Maxwell equation, the equation of the kinematic point movement, and the equation for movement of the medium within electromagnetic fields.

  10. Large-time behavior for the Vlasov/compressible Navier-Stokes equations

    NASA Astrophysics Data System (ADS)

    Choi, Young-Pil

    2016-07-01

    We establish the large-time behavior for the coupled kinetic-fluid equations. More precisely, we consider the Vlasov equation coupled to the compressible isentropic Navier-Stokes equations through a drag forcing term. For this system, the large-time behavior shows the exponential alignment between particles and fluid velocities as time evolves. This improves the previous result by Bae et al. [Discrete Contin. Dyn. Syst. 34, 4419-4458 (2014)] in which they considered the Vlasov/Navier-Stokes equations with nonlocal velocity alignment forces for particles. Employing a new Lyapunov functional measuring the fluctuations of momentum and mass from the averaged quantities, we refine assumptions for the large-time behavior of the solutions to that system.

  11. Study of Bunch Instabilities By the Nonlinear Vlasov-Fokker-Planck Equation

    SciTech Connect

    Warnock, Robert L.; /SLAC

    2006-07-11

    Instabilities of the bunch form in storage rings may be induced through the wake field arising from corrugations in the vacuum chamber, or from the wake and precursor fields due to coherent synchrotron radiation (CSR). For over forty years the linearized Vlasov equation has been applied to calculate the threshold in current for an instability, and the initial growth rate. Increasing interest in nonlinear aspects of the motion has led to numerical solutions of the nonlinear Vlasov equation, augmented with Fokker-Planck terms to describe incoherent synchrotron radiation in the case of electron storage rings. This opens the door to much deeper studies of coherent instabilities, revealing a rich variety of nonlinear phenomena. Recent work on this topic by the author and collaborators is reviewed.

  12. Vlasov simulation of the interaction between the solar wind and a dielectric body

    NASA Astrophysics Data System (ADS)

    Umeda, Takayuki; Kimura, Tetsuya; Togano, Kentaro; Fukazawa, Keiichiro; Matsumoto, Yosuke; Miyoshi, Takahiro; Terada, Naoki; Nakamura, Takuma K. M.; Ogino, Tatsuki

    2011-01-01

    The global structure of wake field behind an unmagnetized object in the solar wind is studied by means of a 2.5-dimensional full-electromagnetic Vlasov simulation. The interaction of a plasma flow with an unmagnetized object is quite different from that with a magnetized object such as the Earth. Due to the absence of the global magnetic field, the unmagnetized object absorbs plasma particles that reach the surface, generating a plasma cavity called "wake" on the antisolar side of the object. For numerical simulations of electromagnetic structures around the wake, it is important to include the charging effect in global-scale simulations. The present study is one of the first attempts to study the formation of wake fields via a full-kinetic Vlasov simulation. It has been confirmed that the spatial structures of wake fields depend on the direction of interplanetary magnetic fields as well as the distance from the body.

  13. Nonlinear kinetic description of Raman growth using an envelope code, and comparisons with Vlasov simulations

    NASA Astrophysics Data System (ADS)

    Bénisti, Didier; Morice, Olivier; Gremillet, Laurent; Siminos, Evangelos; Strozzi, David J.

    2010-10-01

    In this paper, we present our nonlinear kinetic modeling of stimulated Raman scattering in a uniform and collisionless plasma using envelope equations. We recall the derivation of these equations, as well as our theoretical predictions for each of the nonlinear kinetic terms, the precision of which having been carefully checked against Vlasov simulations. We particularly focus here on the numerical resolution of these equations, which requires the additional concept of "self-optimization" that we explain, and we describe the envelope code BRAMA that we used. As an application of our modeling, we present one-dimensional BRAMA simulations of stimulated Raman scattering which predict threshold intensities, as well as time scales for Raman growth above threshold, in very good agreement with those inferred from Vlasov simulations. Finally, we discuss the differences between our modeling and other published ones.

  14. Vlasov simulation of the interaction between the solar wind and a dielectric body

    SciTech Connect

    Umeda, Takayuki; Kimura, Tetsuya; Togano, Kentaro; Matsumoto, Yosuke; Ogino, Tatsuki; Fukazawa, Keiichiro; Miyoshi, Takahiro; Terada, Naoki; Nakamura, Takuma K. M.

    2011-01-15

    The global structure of wake field behind an unmagnetized object in the solar wind is studied by means of a 2.5-dimensional full-electromagnetic Vlasov simulation. The interaction of a plasma flow with an unmagnetized object is quite different from that with a magnetized object such as the Earth. Due to the absence of the global magnetic field, the unmagnetized object absorbs plasma particles that reach the surface, generating a plasma cavity called ''wake'' on the antisolar side of the object. For numerical simulations of electromagnetic structures around the wake, it is important to include the charging effect in global-scale simulations. The present study is one of the first attempts to study the formation of wake fields via a full-kinetic Vlasov simulation. It has been confirmed that the spatial structures of wake fields depend on the direction of interplanetary magnetic fields as well as the distance from the body.

  15. One-dimensional Vlasov simulation of parallel electric fields in two-electron population plasma

    SciTech Connect

    Saharia, K.; Goswami, K. S.

    2007-09-15

    One-dimensional Vlasov simulation in electron current carrying multicomponent plasma seeded with a density depression is presented. Considering two electron populations [one is sufficiently hot ({approx}keV) and the other is cold along with cold background ions], the formation of weak double layers is investigated. Simulation results show that in this numerical setting, formation of such double layers needs the majority of the hot electrons.

  16. Chaos vs linear instability in the Vlasov equation: A fractal analysis characterization

    SciTech Connect

    Atalmi, A.; Baldo, M.; Burgio, G.F.; Rapisarda, A.

    1996-05-01

    In this paper we discuss the most recent results concerning the Vlasov dynamics inside the spinodal region. The chaotic behavior which follows an initial regular evolution is characterized through the calculation of the fractal dimension of the distribution of the final modes excited. The ambiguous role of the largest Lyapunov exponent for unstable systems is also critically reviewed. This investigation seems to confirm the crucial role played by deterministic chaos in nuclear multifragmentation. {copyright} {ital 1996 The American Physical Society.}

  17. Instability conditions for some periodic BGK waves in the Vlasov-Poisson system

    NASA Astrophysics Data System (ADS)

    Pankavich, Stephen; Allen, Robert

    2014-12-01

    A one-dimensional, collisionless plasma given by the Vlasov-Poisson system is considered and the stability properties of periodic steady state solutions known as Bernstein-Greene-Kruskal (BGK) waves are investigated. Sufficient conditions are determined under which BGK waves are linearly unstable under perturbations that share the same period as the equilibria. It is also shown that such solutions cannot support a monotonically decreasing particle distribution function.

  18. A Legendre-Fourier spectral method with exact conservation laws for the Vlasov-Poisson system

    NASA Astrophysics Data System (ADS)

    Manzini, G.; Delzanno, G. L.; Vencels, J.; Markidis, S.

    2016-07-01

    We present the design and implementation of an L2-stable spectral method for the discretization of the Vlasov-Poisson model of a collisionless plasma in one space and velocity dimension. The velocity and space dependence of the Vlasov equation are resolved through a truncated spectral expansion based on Legendre and Fourier basis functions, respectively. The Poisson equation, which is coupled to the Vlasov equation, is also resolved through a Fourier expansion. The resulting system of ordinary differential equation is discretized by the implicit second-order accurate Crank-Nicolson time discretization. The non-linear dependence between the Vlasov and Poisson equations is iteratively solved at any time cycle by a Jacobian-Free Newton-Krylov method. In this work we analyze the structure of the main conservation laws of the resulting Legendre-Fourier model, e.g., mass, momentum, and energy, and prove that they are exactly satisfied in the semi-discrete and discrete setting. The L2-stability of the method is ensured by discretizing the boundary conditions of the distribution function at the boundaries of the velocity domain by a suitable penalty term. The impact of the penalty term on the conservation properties is investigated theoretically and numerically. An implementation of the penalty term that does not affect the conservation of mass, momentum and energy, is also proposed and studied. A collisional term is introduced in the discrete model to control the filamentation effect, but does not affect the conservation properties of the system. Numerical results on a set of standard test problems illustrate the performance of the method.

  19. Renormalized perturbation theory - Vlasov-Poisson system, weak turbulence limit, and gyrokinetics

    NASA Astrophysics Data System (ADS)

    Zhang, Y. Z.; Mahadjan, S. M.

    1988-10-01

    The self-consistency of the renormalized perturbation theory of Zhang and Mahajan (1985) is demonstrated by applying it to the Vlasov-Poisson system and showing that the theory has the correct weak turbulence limit. Energy conservation is proved to arbitrary high order for the electrostatic drift waves. The theory is applied to derive renormalized equations for a low-beta gyrokinetic system. Comparison of this theory with other current theories is presented.

  20. Vlasov simulation of laser-driven shock acceleration and ion turbulence

    NASA Astrophysics Data System (ADS)

    Grassi, A.; Fedeli, L.; Sgattoni, A.; Macchi, A.

    2016-03-01

    We present a Vlasov, i.e. a kinetic Eulerian simulation study of nonlinear collisionless ion-acoustic shocks and solitons excited by an intense laser interacting with an overdense plasma. The use of the Vlasov code avoids problems with low particle statistics and allows a validation of particle-in-cell results. A simple, original correction to the splitting method for the numerical integration of the Vlasov equation has been implemented in order to ensure the charge conservation in the relativistic regime. We show that the ion distribution is affected by the development of a turbulence driven by the relativistic ‘fast’ electron bunches generated at the laser-plasma interaction surface. This leads to the onset of ion reflection at the shock front in an initially cold plasma where only soliton solutions without ion reflection are expected to propagate. We give a simple analytical model to describe the onset of the turbulence as a nonlinear coupling of the ion density with the fast electron currents, taking the pulsed nature of the relativistic electron bunches into account.

  1. Relativistic Eulerian Vlasov simulations of the amplification of seed pulses by Brillouin backscattering in plasmas

    SciTech Connect

    Shoucri, M.; Matte, J.-P.; Vidal, F.

    2015-05-15

    We apply an Eulerian Vlasov code to study the amplification by Brillouin scattering of a short seed laser pulse by a long pump laser pulse in an underdense plasma. The stimulated Brillouin backscattering interaction is the coupling of the pump and seed electromagnetic waves propagating in opposite directions, and the ion plasma wave. The code solves the one-dimensional relativistic Vlasov-Maxwell set of equations. Large amplitude ion waves are generated. In the simulations we present, the density plateau of the plasma is n{sub e}=0.3 n{sub c} (n{sub c} is the critical density), which excludes spurious stimulated Raman scattering amplification (which can occur only if n{sub e}Vlasov simulations allows to simulate long plasma amplifier lengths, and to follow the evolution of the system with a fully kinetic description and with an accurate representation of the phase-space structures of distribution function.

  2. L2-stability of the Vlasov-Maxwell-Boltzmann system near global Maxwellians

    NASA Astrophysics Data System (ADS)

    Ha, Seung-Yeal; Xiao, Qinghua; Xiong, Linjie; Zhao, Huijiang

    2013-12-01

    We present a L2-stability theory of the Vlasov-Maxwell-Boltzmann system for the two-species collisional plasma. We show that in a perturbative regime of a global Maxwellian, the L2-distance between two strong solutions can be controlled by that between initial data in a Lipschitz manner. Our stability result extends earlier results [Ha, S.-Y. and Xiao, Q.-H., "A revisiting to the L2-stability theory of the Boltzmann equation near global Maxwellians," (submitted) and Ha, S.-Y., Yang, X.-F., and Yun, S.-B., "L2 stability theory of the Boltzmann equation near a global Maxwellian," Arch. Ration. Mech. Anal. 197, 657-688 (2010)] on the L2-stability of the Boltzmann equation to the Boltzmann equation coupled with self-consistent external forces. As a direct application of our stability result, we show that classical solutions in Duan et al. ["Optimal large-time behavior of the Vlasov-Maxwell-Boltzmann system in the whole space," Commun. Pure Appl. Math. 24, 1497-1546 (2011)] and Guo ["The Vlasov-Maxwell-Boltzmann system near Maxwellians," Invent. Math. 153(3), 593-630 (2003)] satisfy a uniform L2-stability estimate. This is the first result on the L2-stability of the Boltzmann equation coupled with self-consistent field equations in three dimensions.

  3. Vlasov Simulation of the Effects of Collisions on the Damping of Electron Plasma Waves

    NASA Astrophysics Data System (ADS)

    Banks, Jeff; Berger, Richard; Chapman, Thomas; Brunner, Stephan; Tran, T.

    2015-11-01

    Kinetic simulation of two dimensional plasma waves through direct discretization of the Vlasov equation may be particularly attractive for situations where minimal numerical fluctuation levels are desired, such as when measuring growth rates of plasma wave instabilities. In many cases collisional effects can be important to the evolution of plasma waves because they both set a minimum damping rate for plasma waves and can scatter particles out of resonance through pitch angle scattering. Here we present Vlasov simulations of evolving electron plasma waves (EPWs) in plasmas of varying collisionality. We consider first the effects of electron-ion pitch angle collisions on the frequency and damping, Landau and collisional, of small-amplitude EPWs for a range of collision rates. In addition, the wave phase velocities are extracted from the simulation results and compared with theory. For this study we use the Eulerian-based kinetic code LOKI that evolves the Vlasov-Poisson system in 2+2-dimensional phase space. We then discuss extensions of the collision operator to include thermalization. Discretization of these collision operators using 4th order accurate conservative finite-differencing will be discussed. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344 and funded by the LDRD program at LLNL under project tracking code 15-ERD-038.

  4. Annotated Bibliography of EDGE2D Use

    SciTech Connect

    J.D. Strachan and G. Corrigan

    2005-06-24

    This annotated bibliography is intended to help EDGE2D users, and particularly new users, find existing published literature that has used EDGE2D. Our idea is that a person can find existing studies which may relate to his intended use, as well as gain ideas about other possible applications by scanning the attached tables.

  5. Staring 2-D hadamard transform spectral imager

    DOEpatents

    Gentry, Stephen M.; Wehlburg, Christine M.; Wehlburg, Joseph C.; Smith, Mark W.; Smith, Jody L.

    2006-02-07

    A staring imaging system inputs a 2D spatial image containing multi-frequency spectral information. This image is encoded in one dimension of the image with a cyclic Hadamarid S-matrix. The resulting image is detecting with a spatial 2D detector; and a computer applies a Hadamard transform to recover the encoded image.

  6. On applicability of the “thermalized potential” solver in simulations of the plasma flow in Hall thrusters

    SciTech Connect

    Geng, Jinyue; Brieda, Lubos; Rose, Laura; Keidar, Michael

    2013-09-14

    In Hall thrusters, the potential distribution plays an important role in discharge processes and ion acceleration. This paper presents a 2D potential solver in the Hall thruster instead of the “thermalized potential”, and compares equipotential contours solved by these two methods for different magnetic field conditions. The comparison results reveal that the expected “thermalized potential” works very well when the magnetic field is nearly uniform and electron temperature is constant along the magnetic field lines. However for the case with a highly non-uniform magnetic field or variable electron temperature along the magnetic field lines, the “thermalized potential” is not accurate. In some case with magnetic separatrix inside the thruster channel, the “thermalized potential” model cannot be applied at all. In those cases, a full 2D potential solver must be applied. Overall, this paper shows the limit of applicability of the “thermalized potential” model.

  7. Knowledge-based design of generate-and-patch problem solvers that solve global resource assignment problems

    NASA Technical Reports Server (NTRS)

    Voigt, Kerstin

    1992-01-01

    We present MENDER, a knowledge based system that implements software design techniques that are specialized to automatically compile generate-and-patch problem solvers that satisfy global resource assignments problems. We provide empirical evidence of the superior performance of generate-and-patch over generate-and-test: even with constrained generation, for a global constraint in the domain of '2D-floorplanning'. For a second constraint in '2D-floorplanning' we show that even when it is possible to incorporate the constraint into a constrained generator, a generate-and-patch problem solver may satisfy the constraint more rapidly. We also briefly summarize how an extended version of our system applies to a constraint in the domain of 'multiprocessor scheduling'.

  8. 2-D stationary gas dynamics in a barred galaxy

    NASA Astrophysics Data System (ADS)

    Mulder, W. A.

    2015-06-01

    A code for solving the 2-D isothermal Euler equations of gas dynamics in a rotating disc is presented. The gravitational potential represents a weak bar and controls the flow. A damped Newton method solves the second-order upwind discretisation of the equations for a steady-state solution, using a consistent linearisation and a direct solver. Successive grid refinement, starting from a finite-volume grid with 8 by 8 cells, is applied to find solutions on subsequently finer meshes. On coarser meshes, a first-order spatial discretisation is used. The method obtains quadratic convergence once the solution approaches the steady state. The initial search is quick with the first-order scheme and slower with the second-order discretisation, up to 256 by 256 cells. Beyond, with 512 by 512 cells, the number of iterations becomes too large to be of practical use. Potential causes are discussed. The code can be applied as a tool for generating flow models if used on not too fine meshes.

  9. Robust elastic 2D/3D geometric graph matching

    NASA Astrophysics Data System (ADS)

    Serradell, Eduard; Kybic, Jan; Moreno-Noguer, Francesc; Fua, Pascal

    2012-02-01

    We present an algorithm for geometric matching of graphs embedded in 2D or 3D space. It is applicable for registering any graph-like structures appearing in biomedical images, such as blood vessels, pulmonary bronchi, nerve fibers, or dendritic arbors. Our approach does not rely on the similarity of local appearance features, so it is suitable for multimodal registration with a large difference in appearance. Unlike earlier methods, the algorithm uses edge shape, does not require an initial pose estimate, can handle partial matches, and can cope with nonlinear deformations and topological differences. The matching consists of two steps. First, we find an affine transform that roughly aligns the graphs by exploring the set of all consistent correspondences between the nodes. This can be done at an acceptably low computational expense by using parameter uncertainties for pruning, backtracking as needed. Parameter uncertainties are updated in a Kalman-like scheme with each match. In the second step we allow for a nonlinear part of the deformation, modeled as a Gaussian Process. Short sequences of edges are grouped into superedges, which are then matched between graphs. This allows for topological differences. A maximum consistent set of superedge matches is found using a dedicated branch-and-bound solver, which is over 100 times faster than a standard linear programming approach. Geometrical and topological consistency of candidate matches is determined in a fast hierarchical manner. We demonstrate the effectiveness of our technique at registering angiography and retinal fundus images, as well as neural image stacks.

  10. Verifying a Local Generic Solver in Coq

    NASA Astrophysics Data System (ADS)

    Hofmann, Martin; Karbyshev, Aleksandr; Seidl, Helmut

    Fixpoint engines are the core components of program analysis tools and compilers. If these tools are to be trusted, special attention should be paid also to the correctness of such solvers. In this paper we consider the local generic fixpoint solver RLD which can be applied to constraint systems {x}sqsupseteq fx,{x}in V, over some lattice {D} where the right-hand sides f x are given as arbitrary functions implemented in some specification language. The verification of this algorithm is challenging, because it uses higher-order functions and relies on side effects to track variable dependences as they are encountered dynamically during fixpoint iterations. Here, we present a correctness proof of this algorithm which has been formalized by means of the interactive proof assistant Coq.

  11. Aleph Field Solver Challenge Problem Results Summary.

    SciTech Connect

    Hooper, Russell; Moore, Stan Gerald

    2015-01-01

    Aleph models continuum electrostatic and steady and transient thermal fields using a finite-element method. Much work has gone into expanding the core solver capability to support enriched mod- eling consisting of multiple interacting fields, special boundary conditions and two-way interfacial coupling with particles modeled using Aleph's complementary particle-in-cell capability. This report provides quantitative evidence for correct implementation of Aleph's field solver via order- of-convergence assessments on a collection of problems of increasing complexity. It is intended to provide Aleph with a pedigree and to establish a basis for confidence in results for more challeng- ing problems important to Sandia's mission that Aleph was specifically designed to address.

  12. Light field morphing using 2D features.

    PubMed

    Wang, Lifeng; Lin, Stephen; Lee, Seungyong; Guo, Baining; Shum, Heung-Yeung

    2005-01-01

    We present a 2D feature-based technique for morphing 3D objects represented by light fields. Existing light field morphing methods require the user to specify corresponding 3D feature elements to guide morph computation. Since slight errors in 3D specification can lead to significant morphing artifacts, we propose a scheme based on 2D feature elements that is less sensitive to imprecise marking of features. First, 2D features are specified by the user in a number of key views in the source and target light fields. Then the two light fields are warped view by view as guided by the corresponding 2D features. Finally, the two warped light fields are blended together to yield the desired light field morph. Two key issues in light field morphing are feature specification and warping of light field rays. For feature specification, we introduce a user interface for delineating 2D features in key views of a light field, which are automatically interpolated to other views. For ray warping, we describe a 2D technique that accounts for visibility changes and present a comparison to the ideal morphing of light fields. Light field morphing based on 2D features makes it simple to incorporate previous image morphing techniques such as nonuniform blending, as well as to morph between an image and a light field. PMID:15631126

  13. 2D materials for nanophotonic devices

    NASA Astrophysics Data System (ADS)

    Xu, Renjing; Yang, Jiong; Zhang, Shuang; Pei, Jiajie; Lu, Yuerui

    2015-12-01

    Two-dimensional (2D) materials have become very important building blocks for electronic, photonic, and phononic devices. The 2D material family has four key members, including the metallic graphene, transition metal dichalcogenide (TMD) layered semiconductors, semiconducting black phosphorous, and the insulating h-BN. Owing to the strong quantum confinements and defect-free surfaces, these atomically thin layers have offered us perfect platforms to investigate the interactions among photons, electrons and phonons. The unique interactions in these 2D materials are very important for both scientific research and application engineering. In this talk, I would like to briefly summarize and highlight the key findings, opportunities and challenges in this field. Next, I will introduce/highlight our recent achievements. We demonstrated atomically thin micro-lens and gratings using 2D MoS2, which is the thinnest optical component around the world. These devices are based on our discovery that the elastic light-matter interactions in highindex 2D materials is very strong. Also, I would like to introduce a new two-dimensional material phosphorene. Phosphorene has strongly anisotropic optical response, which creates 1D excitons in a 2D system. The strong confinement in phosphorene also enables the ultra-high trion (charged exciton) binding energies, which have been successfully measured in our experiments. Finally, I will briefly talk about the potential applications of 2D materials in energy harvesting.

  14. Inertial solvation in femtosecond 2D spectra

    NASA Astrophysics Data System (ADS)

    Hybl, John; Albrecht Ferro, Allison; Farrow, Darcie; Jonas, David

    2001-03-01

    We have used 2D Fourier transform spectroscopy to investigate polar solvation. 2D spectroscopy can reveal molecular lineshapes beneath ensemble averaged spectra and freeze molecular motions to give an undistorted picture of the microscopic dynamics of polar solvation. The transition from "inhomogeneous" to "homogeneous" 2D spectra is governed by both vibrational relaxation and solvent motion. Therefore, the time dependence of the 2D spectrum directly reflects the total response of the solvent-solute system. IR144, a cyanine dye with a dipole moment change upon electronic excitation, was used to probe inertial solvation in methanol and propylene carbonate. Since the static Stokes' shift of IR144 in each of these solvents is similar, differences in the 2D spectra result from solvation dynamics. Initial results indicate that the larger propylene carbonate responds more slowly than methanol, but appear to be inconsistent with rotational estimates of the inertial response. To disentangle intra-molecular vibrations from solvent motion, the 2D spectra of IR144 will be compared to the time-dependent 2D spectra of the structurally related nonpolar cyanine dye HDITCP.

  15. Internal Photoemission Spectroscopy of 2-D Materials

    NASA Astrophysics Data System (ADS)

    Nguyen, Nhan; Li, Mingda; Vishwanath, Suresh; Yan, Rusen; Xiao, Shudong; Xing, Huili; Cheng, Guangjun; Hight Walker, Angela; Zhang, Qin

    Recent research has shown the great benefits of using 2-D materials in the tunnel field-effect transistor (TFET), which is considered a promising candidate for the beyond-CMOS technology. The on-state current of TFET can be enhanced by engineering the band alignment of different 2D-2D or 2D-3D heterostructures. Here we present the internal photoemission spectroscopy (IPE) approach to determine the band alignments of various 2-D materials, in particular SnSe2 and WSe2, which have been proposed for new TFET designs. The metal-oxide-2-D semiconductor test structures are fabricated and characterized by IPE, where the band offsets from the 2-D semiconductor to the oxide conduction band minimum are determined by the threshold of the cube root of IPE yields as a function of photon energy. In particular, we find that SnSe2 has a larger electron affinity than most semiconductors and can be combined with other semiconductors to form near broken-gap heterojunctions with low barrier heights which can produce a higher on-state current. The details of data analysis of IPE and the results from Raman spectroscopy and spectroscopic ellipsometry measurements will also be presented and discussed.

  16. Domain decomposition for the SPN solver MINOS

    SciTech Connect

    Jamelot, Erell; Baudron, Anne-Marie; Lautard, Jean-Jacques

    2012-07-01

    In this article we present a domain decomposition method for the mixed SPN equations, discretized with Raviart-Thomas-Nedelec finite elements. This domain decomposition is based on the iterative Schwarz algorithm with Robin interface conditions to handle communications. After having described this method, we give details on how to optimize the convergence. Finally, we give some numerical results computed in a realistic 3D domain. The computations are done with the MINOS solver of the APOLLO3 (R) code. (authors)

  17. A perspective on unstructured grid flow solvers

    NASA Technical Reports Server (NTRS)

    Venkatakrishnan, V.

    1995-01-01

    This survey paper assesses the status of compressible Euler and Navier-Stokes solvers on unstructured grids. Different spatial and temporal discretization options for steady and unsteady flows are discussed. The integration of these components into an overall framework to solve practical problems is addressed. Issues such as grid adaptation, higher order methods, hybrid discretizations and parallel computing are briefly discussed. Finally, some outstanding issues and future research directions are presented.

  18. Fast 2D flood modelling using GPU technology - recent applications and new developments

    NASA Astrophysics Data System (ADS)

    Crossley, Amanda; Lamb, Rob; Waller, Simon; Dunning, Paul

    2010-05-01

    In recent years there has been considerable interest amongst scientists and engineers in exploiting the potential of commodity graphics hardware for desktop parallel computing. The Graphics Processing Units (GPUs) that are used in PC graphics cards have now evolved into powerful parallel co-processors that can be used to accelerate the numerical codes used for floodplain inundation modelling. We report in this paper on experience over the past two years in developing and applying two dimensional (2D) flood inundation models using GPUs to achieve significant practical performance benefits. Starting with a solution scheme for the 2D diffusion wave approximation to the 2D Shallow Water Equations (SWEs), we have demonstrated the capability to reduce model run times in ‘real-world' applications using GPU hardware and programming techniques. We then present results from a GPU-based 2D finite volume SWE solver. A series of numerical test cases demonstrate that the model produces outputs that are accurate and consistent with reference results published elsewhere. In comparisons conducted for a real world test case, the GPU-based SWE model was over 100 times faster than the CPU version. We conclude with some discussion of practical experience in using the GPU technology for flood mapping applications, and for research projects investigating use of Monte Carlo simulation methods for the analysis of uncertainty in 2D flood modelling.

  19. The method of polarized traces for the 2D Helmholtz equation

    NASA Astrophysics Data System (ADS)

    Zepeda-Núñez, Leonardo; Demanet, Laurent

    2016-03-01

    We present a solver for the 2D high-frequency Helmholtz equation in heterogeneous acoustic media, with online parallel complexity that scales optimally as O (N/L), where N is the number of volume unknowns, and L is the number of processors, as long as L grows at most like a small fractional power of N. The solver decomposes the domain into layers, and uses transmission conditions in boundary integral form to explicitly define "polarized traces", i.e., up- and down-going waves sampled at interfaces. Local direct solvers are used in each layer to precompute traces of local Green's functions in an embarrassingly parallel way (the offline part), and incomplete Green's formulas are used to propagate interface data in a sweeping fashion, as a preconditioner inside a GMRES loop (the online part). Adaptive low-rank partitioning of the integral kernels is used to speed up their application to interface data. The method uses second-order finite differences. The complexity scalings are empirical but motivated by an analysis of ranks of off-diagonal blocks of oscillatory integrals. They continue to hold in the context of standard geophysical community models such as BP and Marmousi 2, where convergence occurs in 5 to 10 GMRES iterations. While the parallelism in this paper stems from decomposing the domain, we do not explore the alternative of parallelizing the systems solves with distributed linear algebra routines.

  20. Brittle damage models in DYNA2D

    SciTech Connect

    Faux, D.R.

    1997-09-01

    DYNA2D is an explicit Lagrangian finite element code used to model dynamic events where stress wave interactions influence the overall response of the system. DYNA2D is often used to model penetration problems involving ductile-to-ductile impacts; however, with the advent of the use of ceramics in the armor-anti-armor community and the need to model damage to laser optics components, good brittle damage models are now needed in DYNA2D. This report will detail the implementation of four brittle damage models in DYNA2D, three scalar damage models and one tensor damage model. These new brittle damage models are then used to predict experimental results from three distinctly different glass damage problems.

  1. Matrix models of 2d gravity

    SciTech Connect

    Ginsparg, P.

    1991-01-01

    These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.

  2. Matrix models of 2d gravity

    SciTech Connect

    Ginsparg, P.

    1991-12-31

    These are introductory lectures for a general audience that give an overview of the subject of matrix models and their application to random surfaces, 2d gravity, and string theory. They are intentionally 1.5 years out of date.

  3. 2D electronic materials for army applications

    NASA Astrophysics Data System (ADS)

    O'Regan, Terrance; Perconti, Philip

    2015-05-01

    The record electronic properties achieved in monolayer graphene and related 2D materials such as molybdenum disulfide and hexagonal boron nitride show promise for revolutionary high-speed and low-power electronic devices. Heterogeneous 2D-stacked materials may create enabling technology for future communication and computation applications to meet soldier requirements. For instance, transparent, flexible and even wearable systems may become feasible. With soldier and squad level electronic power demands increasing, the Army is committed to developing and harnessing graphene-like 2D materials for compact low size-weight-and-power-cost (SWAP-C) systems. This paper will review developments in 2D electronic materials at the Army Research Laboratory over the last five years and discuss directions for future army applications.

  4. 2-d Finite Element Code Postprocessor

    1996-07-15

    ORION is an interactive program that serves as a postprocessor for the analysis programs NIKE2D, DYNA2D, TOPAZ2D, and CHEMICAL TOPAZ2D. ORION reads binary plot files generated by the two-dimensional finite element codes currently used by the Methods Development Group at LLNL. Contour and color fringe plots of a large number of quantities may be displayed on meshes consisting of triangular and quadrilateral elements. ORION can compute strain measures, interface pressures along slide lines, reaction forcesmore » along constrained boundaries, and momentum. ORION has been applied to study the response of two-dimensional solids and structures undergoing finite deformations under a wide variety of large deformation transient dynamic and static problems and heat transfer analyses.« less

  5. Chemical Approaches to 2D Materials.

    PubMed

    Samorì, Paolo; Palermo, Vincenzo; Feng, Xinliang

    2016-08-01

    Chemistry plays an ever-increasing role in the production, functionalization, processing and applications of graphene and other 2D materials. This special issue highlights a selection of enlightening chemical approaches to 2D materials, which nicely reflect the breadth of the field and convey the excitement of the individuals involved in it, who are trying to translate graphene and related materials from the laboratory into a real, high-impact technology. PMID:27478083

  6. Impact of high speed civil transports on stratospheric ozone: A 2-D model investigation

    SciTech Connect

    Kinnison, D.E.; Connell, P.S.

    1996-12-01

    This study investigates the effect on stratospheric ozone from a fleet of proposed High Speed Civil Transports (HSCTs). The new LLNL 2-D operator-split chemical-radiative-transport model of the troposphere and stratosphere is used for this HSCT investigation. This model is integrated in a diurnal manner, using an implicit numerical solver. Therefore, rate coefficients are not modified by any sort of diurnal average factor. This model also does not make any assumptions on lumping of chemical species into families. Comparisons to previous model-derived HSCT assessment of ozone change are made, both to the previous LLNL 2-D model and to other models from the international assessment modeling community. The sensitivity to the NO{sub x} emission index and sulfate surface area density is also explored.

  7. Extended 2D generalized dilaton gravity theories

    NASA Astrophysics Data System (ADS)

    de Mello, R. O.

    2008-09-01

    We show that an anomaly-free description of matter in (1+1) dimensions requires a deformation of the 2D relativity principle, which introduces a non-trivial centre in the 2D Poincaré algebra. Then we work out the reduced phase space of the anomaly-free 2D relativistic particle, in order to show that it lives in a noncommutative 2D Minkowski space. Moreover, we build a Gaussian wave packet to show that a Planck length is well defined in two dimensions. In order to provide a gravitational interpretation for this noncommutativity, we propose to extend the usual 2D generalized dilaton gravity models by a specific Maxwell component, which guages the extra symmetry associated with the centre of the 2D Poincaré algebra. In addition, we show that this extension is a high energy correction to the unextended dilaton theories that can affect the topology of spacetime. Further, we couple a test particle to the general extended dilaton models with the purpose of showing that they predict a noncommutativity in curved spacetime, which is locally described by a Moyal star product in the low energy limit. We also conjecture a probable generalization of this result, which provides strong evidence that the noncommutativity is described by a certain star product which is not of the Moyal type at high energies. Finally, we prove that the extended dilaton theories can be formulated as Poisson Sigma models based on a nonlinear deformation of the extended Poincaré algebra.

  8. Flood simulation using an open source quadtree grid shallow water flow solver

    NASA Astrophysics Data System (ADS)

    An, H.; Yu, S.

    2012-12-01

    We carry out performance testing of Gerris for flood simulation. Gerris Flow Solver is open source software and has the capability of adaptive quadtree grid generation. In particular, the shallow water flow solver within Gerris Flow Solver implements second-order accurate Gudunov type numerical schemes, with preserving the balance of source and flux terms on quadtree cut cell grids. The combination of quadtree grids with the cut cell method improves the flexibility of quadtree grids for grid generation. In addition, the model has the capacity of adaptive meshing in an easy and effective way, which can improve computational efficiency in 2D modeling. Pre- and post-processors are already well equipped for users. Finally, an extension such as bed erosion or sediment transport can be added if needed. Two flood events, Malpasset dam break in France and Baeksan levee failure in Korea, are simulated using Gerris, with adaptively refining meshes near water fronts and the river boundary. Simulation results are compared with survey data, experimental data as well as simulation results by other researchers. The simulation results demonstrate that the adaptive quadtree model can save approximately 95% of the computational cost while preserving the accuracy. Gerris is a very attractive alternative for flood managers given the favorable features demonstrated in this paper.

  9. Simultaneous elastic parameter inversion in 2-D/3-D TTI medium combined later arrival times

    NASA Astrophysics Data System (ADS)

    Bai, Chao-ying; Wang, Tao; Yang, Shang-bei; Li, Xing-wang; Huang, Guo-jiao

    2016-04-01

    Traditional traveltime inversion for anisotropic medium is, in general, based on a "weak" assumption in the anisotropic property, which simplifies both the forward part (ray tracing is performed once only) and the inversion part (a linear inversion solver is possible). But for some real applications, a general (both "weak" and "strong") anisotropic medium should be considered. In such cases, one has to develop a ray tracing algorithm to handle with the general (including "strong") anisotropic medium and also to design a non-linear inversion solver for later tomography. Meanwhile, it is constructive to investigate how much the tomographic resolution can be improved by introducing the later arrivals. For this motivation, we incorporated our newly developed ray tracing algorithm (multistage irregular shortest-path method) for general anisotropic media with a non-linear inversion solver (a damped minimum norm, constrained least squares problem with a conjugate gradient approach) to formulate a non-linear inversion solver for anisotropic medium. This anisotropic traveltime inversion procedure is able to combine the later (reflected) arrival times. Both 2-D/3-D synthetic inversion experiments and comparison tests show that (1) the proposed anisotropic traveltime inversion scheme is able to recover the high contrast anomalies and (2) it is possible to improve the tomographic resolution by introducing the later (reflected) arrivals, but not as expected in the isotropic medium, because the different velocity (qP, qSV and qSH) sensitivities (or derivatives) respective to the different elastic parameters are not the same but are also dependent on the inclination angle.

  10. L{sup 2}-stability of the Vlasov-Maxwell-Boltzmann system near global Maxwellians

    SciTech Connect

    Ha, Seung-Yeal Xiao, Qinghua; Xiong, Linjie Zhao, Huijiang

    2013-12-15

    We present a L{sup 2}-stability theory of the Vlasov-Maxwell-Boltzmann system for the two-species collisional plasma. We show that in a perturbative regime of a global Maxwellian, the L{sup 2}-distance between two strong solutions can be controlled by that between initial data in a Lipschitz manner. Our stability result extends earlier results [Ha, S.-Y. and Xiao, Q.-H., “A revisiting to the L{sup 2}-stability theory of the Boltzmann equation near global Maxwellians,” (submitted) and Ha, S.-Y., Yang, X.-F., and Yun, S.-B., “L{sup 2} stability theory of the Boltzmann equation near a global Maxwellian,” Arch. Ration. Mech. Anal. 197, 657–688 (2010)] on the L{sup 2}-stability of the Boltzmann equation to the Boltzmann equation coupled with self-consistent external forces. As a direct application of our stability result, we show that classical solutions in Duan et al. [“Optimal large-time behavior of the Vlasov-Maxwell-Boltzmann system in the whole space,” Commun. Pure Appl. Math. 24, 1497–1546 (2011)] and Guo [“The Vlasov-Maxwell-Boltzmann system near Maxwellians,” Invent. Math. 153(3), 593–630 (2003)] satisfy a uniform L{sup 2}-stability estimate. This is the first result on the L{sup 2}-stability of the Boltzmann equation coupled with self-consistent field equations in three dimensions.

  11. Wave dispersion in the hybrid-Vlasov model: Verification of Vlasiator

    SciTech Connect

    Kempf, Yann; Pokhotelov, Dimitry; Koskinen, Hannu E. J.; Alfthan, Sebastian von; Palmroth, Minna; Vaivads, Andris

    2013-11-15

    Vlasiator is a new hybrid-Vlasov plasma simulation code aimed at simulating the entire magnetosphere of the Earth. The code treats ions (protons) kinetically through Vlasov's equation in the six-dimensional phase space while electrons are a massless charge-neutralizing fluid [M. Palmroth et al., J. Atmos. Sol.-Terr. Phys. 99, 41 (2013); A. Sandroos et al., Parallel Comput. 39, 306 (2013)]. For first global simulations of the magnetosphere, it is critical to verify and validate the model by established methods. Here, as part of the verification of Vlasiator, we characterize the low-β plasma wave modes described by this model and compare with the solution computed by the Waves in Homogeneous, Anisotropic Multicomponent Plasmas (WHAMP) code [K. Rönnmark, Kiruna Geophysical Institute Reports No. 179, 1982], using dispersion curves and surfaces produced with both programs. The match between the two fundamentally different approaches is excellent in the low-frequency, long wavelength range which is of interest in global magnetospheric simulations. The left-hand and right-hand polarized wave modes as well as the Bernstein modes in the Vlasiator simulations agree well with the WHAMP solutions. Vlasiator allows a direct investigation of the importance of the Hall term by including it in or excluding it from Ohm's law in simulations. This is illustrated showing examples of waves obtained using the ideal Ohm's law and Ohm's law including the Hall term. Our analysis emphasizes the role of the Hall term in Ohm's law in obtaining wave modes departing from ideal magnetohydrodynamics in the hybrid-Vlasov model.

  12. Finite-N corrections to Vlasov dynamics and the range of pair interactions

    NASA Astrophysics Data System (ADS)

    Gabrielli, Andrea; Joyce, Michael; Morand, Jules

    2014-12-01

    We explore the conditions on a pair interaction for the validity of the Vlasov equation to describe the dynamics of an interacting N -particle system in the large N limit. Using a coarse graining in phase space of the exact Klimontovich equation for the N -particle system, we evaluate, neglecting correlations of density fluctuations, the scalings with N of the terms describing the corrections to the Vlasov equation for the coarse-grained one-particle phase space density. Considering a generic interaction with radial pair force F (r ) , with F (r ) ˜1 /rγ at large scales, and regulated to a bounded behavior below a "softening" scale ɛ , we find that there is an essential qualitative difference between the cases γ d , i.e., depending on the the integrability at large distances of the pair force. In the former case, the corrections to the Vlasov dynamics for a given coarse-grained scale are essentially insensitive to the softening parameter ɛ , while for γ >d the amplitude of these terms is directly regulated by ɛ , and thus by the small scale properties of the interaction. This corresponds to a simple physical criterion for a basic distinction between long-range (γ ≤d ) and short-range (γ >d ) interactions, different from the canonical one (γ ≤d +1 or γ >d +1 ) based on thermodynamic analysis. This alternative classification, based on purely dynamical considerations, is relevant notably to understanding the conditions for the existence of so-called quasistationary states in long-range interacting systems.

  13. Approximate Riemann solvers for the Godunov SPH (GSPH)

    NASA Astrophysics Data System (ADS)

    Puri, Kunal; Ramachandran, Prabhu

    2014-08-01

    The Godunov Smoothed Particle Hydrodynamics (GSPH) method is coupled with non-iterative, approximate Riemann solvers for solutions to the compressible Euler equations. The use of approximate solvers avoids the expensive solution of the non-linear Riemann problem for every interacting particle pair, as required by GSPH. In addition, we establish an equivalence between the dissipative terms of GSPH and the signal based SPH artificial viscosity, under the restriction of a class of approximate Riemann solvers. This equivalence is used to explain the anomalous “wall heating” experienced by GSPH and we provide some suggestions to overcome it. Numerical tests in one and two dimensions are used to validate the proposed Riemann solvers. A general SPH pairing instability is observed for two-dimensional problems when using unequal mass particles. In general, Ducowicz Roe's and HLLC approximate Riemann solvers are found to be suitable replacements for the iterative Riemann solver in the original GSPH scheme.

  14. Noninvariance of Energy-Momentum Scale Ranges in Vlasov Simulations of Relativistic Interactions and Warm Wavebreaking of Relativistic Plasma Waves

    NASA Astrophysics Data System (ADS)

    Thomas, Alec

    2015-11-01

    For certain classes of relativistic plasma problems, using a Lorentz boosted frame can be even more advantageous for gridded momentum space-position space-time simulations than Vay [Vay PRL 2007] showed was the case for position space-time simulations, resulting in speed up proportional to γboost6. The technique was applied using a Spectral Vlasov code to the problem of warm wavebreaking limits in relativistic plasma and demonstrates numerical results consistent with the analytic conclusions of Schroeder et al. [Schroeder PRE 2005]. By appropriate normalization, a self-similar behavior for the Vlasov equation in different Lorentz frames is found. These results are relevant to beam and laser driven plasma based accelerators and the potential for Vlasov simulation of them. National Science Foundation Career grant 1054164 and the Air Force Office of Scientific Research under Young Investigator Program grant FA9550-12-1-0310 and grant FA9550-14-1-0156.

  15. A Uniqueness Criterion for Unbounded Solutions to the Vlasov-Poisson System

    NASA Astrophysics Data System (ADS)

    Miot, Evelyne

    2016-07-01

    We prove uniqueness for the Vlasov-Poisson system in two and three dimensions under the condition that the L p norms of the macroscopic density grow at most linearly with respect to p. This allows for solutions with logarithmic singularities. We provide explicit examples of initial data that fulfill the uniqueness condition and that exhibit a logarithmic blow-up. In the gravitational two-dimensional case, such states are intimately related to radially symmetric steady solutions of the system. Our method relies on the Lagrangian formulation for the solutions, exploiting the second-order structure of the corresponding ODE.

  16. Kinetic model of collective scattering off fast ion generated electromagnetic fluctuations in magnetized Vlasov plasma

    SciTech Connect

    Heikkinen, J.A.; Dumbrajs, O.

    1996-02-01

    From the general three-wave coupling formalism in magnetized nonrelativistic Vlasov plasma, an expression is derived that gives the differential cross section for the scattering of incident radiation off of thermal fluctuations induced by ions in a hot magnetized plasma. The model is valid to any order in thermal parameters, and can thus generalize the previous theory models to regimes where either the electron Larmor radius or the electron cyclotron resonance are significant for the scattered wave. {copyright} {ital 1996 American Institute of Physics.}

  17. Time-Asymptotic Evolution of Spatially Uniform Gaussian Vlasov Fluctuation Fields

    NASA Astrophysics Data System (ADS)

    Lancellotti, Carlo

    2016-05-01

    We consider Vlasov fluctuations from a spatially uniform, infinitely extended plasma equilibrium and derive the appropriate Braun-Hepp evolution equations (with regularized potential). Assuming a Gaussian initial fluctuation field (of the form associated with the relevant central limit theorem), we show that at long times the fluctuating force field converges in law to a stationary Gaussian process. We also illustrate how the time-asymptotic fluctuating force field is formally associated with the diffusion matrix and drift vector for the Balescu-Guernsey-Lenard kinetic equation.

  18. Spectrum structure and behavior of the Vlasov-Maxwell-Boltzmann system without angular cutoff

    NASA Astrophysics Data System (ADS)

    Huang, Yongting

    2016-02-01

    The spectrum structure and behavior of the Vlasov-Maxwell-Boltzmann (VMB) system with physical angular non-cutoff intermolecular collisions are studied in this paper. The analysis shows the effect of the Lorentz force induced by the electro-magnetic field leads to some different spectrum structure from the non-cutoff Boltzmann equation. The spectrum structure in high frequency, quite different from the VMB system with angular cutoff assumption, also illustrates the hyperbolic structure of the Maxwell equation. Furthermore, the large time behavior and optimal convergence rates to the equilibrium of the non-cutoff VMB system are established on the spectrum analysis.

  19. Simulation study of entropy production in the one-dimensional Vlasov system

    NASA Astrophysics Data System (ADS)

    Dai, Zongliang; Wang, Shaojie

    2016-07-01

    The coarse-grain averaged distribution function of the one-dimensional Vlasov system is obtained by numerical simulation. The entropy productions in cases of the random field, the linear Landau damping, and the bump-on-tail instability are computed with the coarse-grain averaged distribution function. The computed entropy production is converged with increasing length of coarse-grain average. When the distribution function differs slightly from a Maxwellian distribution, the converged value agrees with the result computed by using the definition of thermodynamic entropy. The length of the coarse-grain average to compute the coarse-grain averaged distribution function is discussed.

  20. A Spectral Algorithm for Solving the Relativistic Vlasov-Maxwell Equations

    NASA Technical Reports Server (NTRS)

    Shebalin, John V.

    2001-01-01

    A spectral method algorithm is developed for the numerical solution of the full six-dimensional Vlasov-Maxwell system of equations. Here, the focus is on the electron distribution function, with positive ions providing a constant background. The algorithm consists of a Jacobi polynomial-spherical harmonic formulation in velocity space and a trigonometric formulation in position space. A transform procedure is used to evaluate nonlinear terms. The algorithm is suitable for performing moderate resolution simulations on currently available supercomputers for both scientific and engineering applications.

  1. Optimal Gradient Estimates and Asymptotic Behaviour for the Vlasov-Poisson System with Small Initial Data

    NASA Astrophysics Data System (ADS)

    Hwang, Hyung Ju; Rendall, Alan D.; Velázquez, Juan J. L.

    2011-04-01

    The Vlasov-Poisson system describes interacting systems of collisionless particles. For solutions with small initial data in three dimensions it is known that the spatial density of particles decays as t -3 at late times. In this paper this statement is refined to show that each derivative of the density which is taken leads to an extra power of decay, so that in N dimensions for {N ≥q 3} the derivative of the density of order k decays as t - N- k . An asymptotic formula for the solution at late times is also obtained.

  2. New Multigrid Solver Advances in TOPS

    SciTech Connect

    Falgout, R D; Brannick, J; Brezina, M; Manteuffel, T; McCormick, S

    2005-06-27

    In this paper, we highlight new multigrid solver advances in the Terascale Optimal PDE Simulations (TOPS) project in the Scientific Discovery Through Advanced Computing (SciDAC) program. We discuss two new algebraic multigrid (AMG) developments in TOPS: the adaptive smoothed aggregation method ({alpha}SA) and a coarse-grid selection algorithm based on compatible relaxation (CR). The {alpha}SA method is showing promising results in initial studies for Quantum Chromodynamics (QCD) applications. The CR method has the potential to greatly improve the applicability of AMG.

  3. DPS--a computerised diagnostic problem solver.

    PubMed

    Bartos, P; Gyárfas, F; Popper, M

    1982-01-01

    The paper contains a short description of the DPS system which is a computerized diagnostic problem solver. The system is under development of the Research Institute of Medical Bionics in Bratislava, Czechoslovakia. Its underlying philosophy yields from viewing the diagnostic process as process of cognitive problem solving. The implementation of the system is based on the methods of Artificial Intelligence and utilisation of production systems and frame theory should be noted in this context. Finally a list of program modules and their characterisation is presented. PMID:6811229

  4. Updates to the NEQAIR Radiation Solver

    NASA Technical Reports Server (NTRS)

    Cruden, Brett A.; Brandis, Aaron M.

    2014-01-01

    The NEQAIR code is one of the original heritage solvers for radiative heating prediction in aerothermal environments, and is still used today for mission design purposes. This paper discusses the implementation of the first major revision to the NEQAIR code in the last five years, NEQAIR v14.0. The most notable features of NEQAIR v14.0 are the parallelization of the radiation computation, reducing runtimes by about 30×, and the inclusion of mid-wave CO2 infrared radiation.

  5. Input-output-controlled nonlinear equation solvers

    NASA Technical Reports Server (NTRS)

    Padovan, Joseph

    1988-01-01

    To upgrade the efficiency and stability of the successive substitution (SS) and Newton-Raphson (NR) schemes, the concept of input-output-controlled solvers (IOCS) is introduced. By employing the formal properties of the constrained version of the SS and NR schemes, the IOCS algorithm can handle indefiniteness of the system Jacobian, can maintain iterate monotonicity, and provide for separate control of load incrementation and iterate excursions, as well as having other features. To illustrate the algorithmic properties, the results for several benchmark examples are presented. These define the associated numerical efficiency and stability of the IOCS.

  6. SmaggIce 2D Version 1.8: Software Toolkit Developed for Aerodynamic Simulation Over Iced Airfoils

    NASA Technical Reports Server (NTRS)

    Choo, Yung K.; Vickerman, Mary B.

    2005-01-01

    SmaggIce 2D version 1.8 is a software toolkit developed at the NASA Glenn Research Center that consists of tools for modeling the geometry of and generating the grids for clean and iced airfoils. Plans call for the completed SmaggIce 2D version 2.0 to streamline the entire aerodynamic simulation process--the characterization and modeling of ice shapes, grid generation, and flow simulation--and to be closely coupled with the public-domain application flow solver, WIND. Grid generated using version 1.8, however, can be used by other flow solvers. SmaggIce 2D will help researchers and engineers study the effects of ice accretion on airfoil performance, which is difficult to do with existing software tools because of complex ice shapes. Using SmaggIce 2D, when fully developed, to simulate flow over an iced airfoil will help to reduce the cost of performing flight and wind-tunnel tests for certifying aircraft in natural and simulated icing conditions.

  7. Optical modulators with 2D layered materials

    NASA Astrophysics Data System (ADS)

    Sun, Zhipei; Martinez, Amos; Wang, Feng

    2016-04-01

    Light modulation is an essential operation in photonics and optoelectronics. With existing and emerging technologies increasingly demanding compact, efficient, fast and broadband optical modulators, high-performance light modulation solutions are becoming indispensable. The recent realization that 2D layered materials could modulate light with superior performance has prompted intense research and significant advances, paving the way for realistic applications. In this Review, we cover the state of the art of optical modulators based on 2D materials, including graphene, transition metal dichalcogenides and black phosphorus. We discuss recent advances employing hybrid structures, such as 2D heterostructures, plasmonic structures, and silicon and fibre integrated structures. We also take a look at the future perspectives and discuss the potential of yet relatively unexplored mechanisms, such as magneto-optic and acousto-optic modulation.

  8. Large Area Synthesis of 2D Materials

    NASA Astrophysics Data System (ADS)

    Vogel, Eric

    Transition metal dichalcogenides (TMDs) have generated significant interest for numerous applications including sensors, flexible electronics, heterostructures and optoelectronics due to their interesting, thickness-dependent properties. Despite recent progress, the synthesis of high-quality and highly uniform TMDs on a large scale is still a challenge. In this talk, synthesis routes for WSe2 and MoS2 that achieve monolayer thickness uniformity across large area substrates with electrical properties equivalent to geological crystals will be described. Controlled doping of 2D semiconductors is also critically required. However, methods established for conventional semiconductors, such as ion implantation, are not easily applicable to 2D materials because of their atomically thin structure. Redox-active molecular dopants will be demonstrated which provide large changes in carrier density and workfunction through the choice of dopant, treatment time, and the solution concentration. Finally, several applications of these large-area, uniform 2D materials will be described including heterostructures, biosensors and strain sensors.

  9. 2D microwave imaging reflectometer electronics

    SciTech Connect

    Spear, A. G.; Domier, C. W. Hu, X.; Muscatello, C. M.; Ren, X.; Luhmann, N. C.; Tobias, B. J.

    2014-11-15

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program.

  10. 2D microwave imaging reflectometer electronics

    NASA Astrophysics Data System (ADS)

    Spear, A. G.; Domier, C. W.; Hu, X.; Muscatello, C. M.; Ren, X.; Tobias, B. J.; Luhmann, N. C.

    2014-11-01

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program.

  11. 2D microwave imaging reflectometer electronics.

    PubMed

    Spear, A G; Domier, C W; Hu, X; Muscatello, C M; Ren, X; Tobias, B J; Luhmann, N C

    2014-11-01

    A 2D microwave imaging reflectometer system has been developed to visualize electron density fluctuations on the DIII-D tokamak. Simultaneously illuminated at four probe frequencies, large aperture optics image reflections from four density-dependent cutoff surfaces in the plasma over an extended region of the DIII-D plasma. Localized density fluctuations in the vicinity of the plasma cutoff surfaces modulate the plasma reflections, yielding a 2D image of electron density fluctuations. Details are presented of the receiver down conversion electronics that generate the in-phase (I) and quadrature (Q) reflectometer signals from which 2D density fluctuation data are obtained. Also presented are details on the control system and backplane used to manage the electronics as well as an introduction to the computer based control program. PMID:25430247

  12. 2D-Crystal-Based Functional Inks.

    PubMed

    Bonaccorso, Francesco; Bartolotta, Antonino; Coleman, Jonathan N; Backes, Claudia

    2016-08-01

    The possibility to produce and process graphene, related 2D crystals, and heterostructures in the liquid phase makes them promising materials for an ever-growing class of applications as composite materials, sensors, in flexible optoelectronics, and energy storage and conversion. In particular, the ability to formulate functional inks with on-demand rheological and morphological properties, i.e., lateral size and thickness of the dispersed 2D crystals, is a step forward toward the development of industrial-scale, reliable, inexpensive printing/coating processes, a boost for the full exploitation of such nanomaterials. Here, the exfoliation strategies of graphite and other layered crystals are reviewed, along with the advances in the sorting of lateral size and thickness of the exfoliated sheets together with the formulation of functional inks and the current development of printing/coating processes of interest for the realization of 2D-crystal-based devices. PMID:27273554

  13. libmpdata++ 0.1: a library of parallel MPDATA solvers for systems of generalised transport equations

    NASA Astrophysics Data System (ADS)

    Jaruga, A.; Arabas, S.; Jarecka, D.; Pawlowska, H.; Smolarkiewicz, P. K.; Waruszewski, M.

    2014-11-01

    This paper accompanies first release of libmpdata++, a C++ library implementing the Multidimensional Positive-Definite Advection Transport Algorithm (MPDATA). The library offers basic numerical solvers for systems of generalised transport equations. The solvers are forward-in-time, conservative and non-linearly stable. The libmpdata++ library covers the basic second-order-accurate formulation of MPDATA, its third-order variant, the infinite-gauge option for variable-sign fields and a flux-corrected transport extension to guarantee non-oscillatory solutions. The library is equipped with a non-symmetric variational elliptic solver for implicit evaluation of pressure gradient terms. All solvers offer parallelisation through domain decomposition using shared-memory parallelisation. The paper describes the library programming interface, and serves as a user guide. Supported options are illustrated with benchmarks discussed in the MPDATA literature. Benchmark descriptions include code snippets as well as quantitative representations of simulation results. Examples of applications include: homogeneous transport in one, two and three dimensions in Cartesian and spherical domains; shallow-water system compared with analytical solution (originally derived for a 2-D case); and a buoyant convection problem in an incompressible Boussinesq fluid with interfacial instability. All the examples are implemented out of the library tree. Regardless of the differences in the problem dimensionality, right-hand-side terms, boundary conditions and parallelisation approach, all the examples use the same unmodified library, which is a key goal of libmpdata++ design. The design, based on the principle of separation of concerns, prioritises the user and developer productivity. The libmpdata++ library is implemented in C++, making use of the Blitz++ multi-dimensional array containers, and is released as free/libre and open-source software.

  14. libmpdata++ 1.0: a library of parallel MPDATA solvers for systems of generalised transport equations

    NASA Astrophysics Data System (ADS)

    Jaruga, A.; Arabas, S.; Jarecka, D.; Pawlowska, H.; Smolarkiewicz, P. K.; Waruszewski, M.

    2015-04-01

    This paper accompanies the first release of libmpdata++, a C++ library implementing the multi-dimensional positive-definite advection transport algorithm (MPDATA) on regular structured grid. The library offers basic numerical solvers for systems of generalised transport equations. The solvers are forward-in-time, conservative and non-linearly stable. The libmpdata++ library covers the basic second-order-accurate formulation of MPDATA, its third-order variant, the infinite-gauge option for variable-sign fields and a flux-corrected transport extension to guarantee non-oscillatory solutions. The library is equipped with a non-symmetric variational elliptic solver for implicit evaluation of pressure gradient terms. All solvers offer parallelisation through domain decomposition using shared-memory parallelisation. The paper describes the library programming interface, and serves as a user guide. Supported options are illustrated with benchmarks discussed in the MPDATA literature. Benchmark descriptions include code snippets as well as quantitative representations of simulation results. Examples of applications include homogeneous transport in one, two and three dimensions in Cartesian and spherical domains; a shallow-water system compared with analytical solution (originally derived for a 2-D case); and a buoyant convection problem in an incompressible Boussinesq fluid with interfacial instability. All the examples are implemented out of the library tree. Regardless of the differences in the problem dimensionality, right-hand-side terms, boundary conditions and parallelisation approach, all the examples use the same unmodified library, which is a key goal of libmpdata++ design. The design, based on the principle of separation of concerns, prioritises the user and developer productivity. The libmpdata++ library is implemented in C++, making use of the Blitz++ multi-dimensional array containers, and is released as free/libre and open-source software.

  15. Comparison of electromagnetic solvers for antennas mounted on vehicles

    NASA Astrophysics Data System (ADS)

    Mocker, M. S. L.; Hipp, S.; Spinnler, F.; Tazi, H.; Eibert, T. F.

    2015-11-01

    An electromagnetic solver comparison for various use cases of antennas mounted on vehicles is presented. For this purpose, several modeling approaches, called transient, frequency and integral solver, including the features fast resonant method and autoregressive filter, offered by CST MWS, are investigated. The solvers and methods are compared for a roof antenna itself, a simplified vehicle, a roof including a panorama window and a combination of antenna and vehicle. With these examples, the influence of different materials, data formats and parameters such as size and complexity are investigated. Also, the necessary configurations for the mesh and the solvers are described.

  16. ASTROP2-LE: A Mistuned Aeroelastic Analysis System Based on a Two Dimensional Linearized Euler Solver

    NASA Technical Reports Server (NTRS)

    Reddy, T. S. R.; Srivastava, R.; Mehmed, Oral

    2002-01-01

    An aeroelastic analysis system for flutter and forced response analysis of turbomachines based on a two-dimensional linearized unsteady Euler solver has been developed. The ASTROP2 code, an aeroelastic stability analysis program for turbomachinery, was used as a basis for this development. The ASTROP2 code uses strip theory to couple a two dimensional aerodynamic model with a three dimensional structural model. The code was modified to include forced response capability. The formulation was also modified to include aeroelastic analysis with mistuning. A linearized unsteady Euler solver, LINFLX2D is added to model the unsteady aerodynamics in ASTROP2. By calculating the unsteady aerodynamic loads using LINFLX2D, it is possible to include the effects of transonic flow on flutter and forced response in the analysis. The stability is inferred from an eigenvalue analysis. The revised code, ASTROP2-LE for ASTROP2 code using Linearized Euler aerodynamics, is validated by comparing the predictions with those obtained using linear unsteady aerodynamic solutions.

  17. The 2D lingual appliance system.

    PubMed

    Cacciafesta, Vittorio

    2013-09-01

    The two-dimensional (2D) lingual bracket system represents a valuable treatment option for adult patients seeking a completely invisible orthodontic appliance. The ease of direct or simplified indirect bonding of 2D lingual brackets in combination with low friction mechanics makes it possible to achieve a good functional and aesthetic occlusion, even in the presence of a severe malocclusion. The use of a self-ligating bracket significantly reduces chair-side time for the orthodontist, and the low-profile bracket design greatly improves patient comfort. PMID:24005953

  18. Inkjet printing of 2D layered materials.

    PubMed

    Li, Jiantong; Lemme, Max C; Östling, Mikael

    2014-11-10

    Inkjet printing of 2D layered materials, such as graphene and MoS2, has attracted great interests for emerging electronics. However, incompatible rheology, low concentration, severe aggregation and toxicity of solvents constitute critical challenges which hamper the manufacturing efficiency and product quality. Here, we introduce a simple and general technology concept (distillation-assisted solvent exchange) to efficiently overcome these challenges. By implementing the concept, we have demonstrated excellent jetting performance, ideal printing patterns and a variety of promising applications for inkjet printing of 2D layered materials. PMID:25169938

  19. Measurement of 2D birefringence distribution

    NASA Astrophysics Data System (ADS)

    Noguchi, Masato; Ishikawa, Tsuyoshi; Ohno, Masahiro; Tachihara, Satoru

    1992-10-01

    A new measuring method of 2-D birefringence distribution has been developed. It has not been an easy job to get a birefringence distribution in an optical element with conventional ellipsometry because of its lack of scanning means. Finding an analogy between the rotating analyzer method in ellipsometry and the phase-shifting method in recently developed digital interferometry, we have applied the phase-shifting algorithm to ellipsometry, and have developed a new method that makes the measurement of 2-D birefringence distribution easy and possible. The system contains few moving parts, assuring reliability, and measures a large area of a sample at one time, making the measuring time very short.

  20. Extension and application of the Preissmann slot model to 2D transient mixed flows

    NASA Astrophysics Data System (ADS)

    Maranzoni, Andrea; Dazzi, Susanna; Aureli, Francesca; Mignosa, Paolo

    2015-08-01

    This paper presents an extension of the Preissmann slot concept for the modeling of highly transient two-dimensional (2D) mixed flows. The classic conservative formulation of the 2D shallow water equations for free surface flows is adapted by assuming that two fictitious vertical slots, aligned along the two Cartesian plane directions and normally intersecting, are added on the ceiling of each integration element. Accordingly, transitions between free surface and pressurized flow can be handled in a natural and straightforward way by using the same set of governing equations. The opportunity of coupling free surface and pressurized flows is actually useful not only in one-dimensional (1D) problems concerning sewer systems but also for modeling 2D flooding phenomena in which the pressurization of bridges, culverts, or other crossing hydraulic structures can be expected. Numerical simulations are performed by using a shock-capturing MUSCL-Hancock finite volume scheme combined with the FORCE (First-Order Centred) solver for the evaluation of the numerical fluxes. The validation of the mathematical model is accomplished on the basis of both exact solutions of 1D discontinuous initial value problems and reference radial solutions of idealized test cases with cylindrical symmetry. Furthermore, the capability of the model to deal with practical field-scale applications is assessed by simulating the transit of a bore under an arch bridge. Numerical results show that the proposed model is suitable for the prediction of highly transient 2D mixed flows.

  1. On code verification of RANS solvers

    NASA Astrophysics Data System (ADS)

    Eça, L.; Klaij, C. M.; Vaz, G.; Hoekstra, M.; Pereira, F. S.

    2016-04-01

    This article discusses Code Verification of Reynolds-Averaged Navier Stokes (RANS) solvers that rely on face based finite volume discretizations for volumes of arbitrary shape. The study includes test cases with known analytical solutions (generated with the method of manufactured solutions) corresponding to laminar and turbulent flow, with the latter using eddy-viscosity turbulence models. The procedure to perform Code Verification based on grid refinement studies is discussed and the requirements for its correct application are illustrated in a simple one-dimensional problem. It is shown that geometrically similar grids are recommended for proper Code Verification and so the data should not have scatter making the use of least square fits unnecessary. Results show that it may be advantageous to determine the extrapolated error to cell size/time step zero instead of assuming that it is zero, especially when it is hard to determine the asymptotic order of grid convergence. In the RANS examples, several of the features of the ReFRESCO solver are checked including the effects of the available turbulence models in the convergence properties of the code. It is shown that it is required to account for non-orthogonality effects in the discretization of the diffusion terms and that the turbulence quantities transport equations can deteriorate the order of grid convergence of mean flow quantities.

  2. Using the scalable nonlinear equations solvers package

    SciTech Connect

    Gropp, W.D.; McInnes, L.C.; Smith, B.F.

    1995-02-01

    SNES (Scalable Nonlinear Equations Solvers) is a software package for the numerical solution of large-scale systems of nonlinear equations on both uniprocessors and parallel architectures. SNES also contains a component for the solution of unconstrained minimization problems, called SUMS (Scalable Unconstrained Minimization Solvers). Newton-like methods, which are known for their efficiency and robustness, constitute the core of the package. As part of the multilevel PETSc library, SNES incorporates many features and options from other parts of PETSc. In keeping with the spirit of the PETSc library, the nonlinear solution routines are data-structure-neutral, making them flexible and easily extensible. This users guide contains a detailed description of uniprocessor usage of SNES, with some added comments regarding multiprocessor usage. At this time the parallel version is undergoing refinement and extension, as we work toward a common interface for the uniprocessor and parallel cases. Thus, forthcoming versions of the software will contain additional features, and changes to parallel interface may result at any time. The new parallel version will employ the MPI (Message Passing Interface) standard for interprocessor communication. Since most of these details will be hidden, users will need to perform only minimal message-passing programming.

  3. Algebraic Multiscale Solver for Elastic Geomechanical Deformation

    NASA Astrophysics Data System (ADS)

    Castelletto, N.; Hajibeygi, H.; Tchelepi, H.

    2015-12-01

    Predicting the geomechanical response of geological formations to thermal, pressure, and mechanical loading is important in many engineering applications. The mathematical formulation that describes deformation of a reservoir coupled with flow and transport entails heterogeneous coefficients with a wide range of length scales. Such detailed heterogeneous descriptions of reservoir properties impose severe computational challenges for the study of realistic-scale (km) reservoirs. To deal with these challenges, we developed an Algebraic Multiscale Solver for ELastic geomechanical deformation (EL-AMS). Constructed on finite element fine-scale system, EL-AMS imposes a coarse-scale grid, which is a non-overlapping decomposition of the domain. Then, local (coarse) basis functions for the displacement vector are introduced. These basis functions honor the elastic properties of the local domains subject to the imposed local boundary conditions. The basis form the Restriction and Prolongation operators. These operators allow for the construction of accurate coarse-scale systems for the displacement. While the multiscale system is efficient for resolving low-frequency errors, coupling it with a fine-scale smoother, e.g., ILU(0), leads to an efficient iterative solver. Numerical results for several test cases illustrate that EL-AMS is quite efficient and applicable to simulate elastic deformation of large-scale heterogeneous reservoirs.

  4. Direct Comparison of Full-Scale Vlasov-Fokker-Planck and Classical Modeling of Megagauss Magnetic Field Generation in Plasma Near Hohlraum Walls From Nanosecond Laser Pulses

    NASA Astrophysics Data System (ADS)

    Joglekar, Archis; Thomas, Alexander; Read, Martin; Kingham, Robert

    2014-10-01

    Here, we present 2D numerical modeling of near critical density plasma using a fully implicit Vlasov-Fokker-Planck (VFP) code, IMPACTA, with the addition of a ray tracing package. In certain situations, such as those at the critical surface at the walls of a hohlraum, magnetic fields are generated through the crossed temperature and electron density gradients. Modeling shows 0.3 MG fields and the strong heating also results in magnetization of the plasma up to ωτ ~ 5 . In the case without magnetic field generation, the heat flows from the laser heating region are isotropic. Including magnetic fields causes the heat flow to form jets along the wall due to the Righi-Leduc effect. The heating of the wall region causes steeper temperature gradients. This serves as a positive feedback mechanism for the field generation rate resulting in nearly twice the amount of field generated in comparison to the case without magnetic fields over 1 ns. The heat conduction, field generation, and the calculation of other transport quantities, is performed ab-initio due to the nature of the VFP equation set. In order to determine the importance of the kinetic effects from IMPACTA, we perform direct comparison with a classical (Braginskii) transport code with hydrodynamic motion (CTC+). The authors would like to acknowledge DOE Grant #DESC0010621 and Advanced Research Computing, UM-AA.

  5. Vlasov-Poisson calculations of electron confinement times in Polywell(TM) devices using a steady-state particle-in-cell method

    NASA Astrophysics Data System (ADS)

    Kollasch, Jeffrey; Sovinec, Carl; Santarius, John

    2013-10-01

    Collisionless electron confinement times in polyhedral magnetic cusp configurations are investigated numerically with a particle-in-cell technique designed for steady-state conditions of the Vlasov-Poisson system. This method is based on iteratively solving particle trajectories in the time-independent electrostatic field produced by trajectories from a previous iteration. A new code based on this technique, SSUBPIC (steady-state unstructured-boundary particle-in-cell), is presented. It is found to converge rapidly for the cases investigated. The implementation is verified on computations of space-charge limited current in 1D and 2D configurations. Here, it is applied to study the effects of an ejecting virtual cathode potential well on a single electron species injected by guns into a Polywell(TM). Adverse effects of non-magnetically shielded structural members on confinement time are also calculated. Work supported by the Department of Defense (DoD) through the National Defense Science and Engineering Graduate Fellowship (NDSEG) Program.

  6. Electrostatic drift waves in a 2D magnetic current sheet - a new kinetic theory

    NASA Astrophysics Data System (ADS)

    Fruit, G.; Louarn, P.; Tur, A.

    2015-12-01

    In the general context of understanding the possible destabilization of the magnetotail before a substorm, a kinetic model for electromagnetic instabilities in resonant interaction with trapped bouncing electrons has been proposed for several years. Fruit et al. 2013 already used it to investigate the possibilities for electrostatic instabilities. Tur et al. 2014 generalizes the model for full electromagnetic perturbations.It turns out that some corrections should be added to the electrostatic version of Fruit et al. 2013. We propose to revist the theory in this present paper.Starting with a modified 2D Harris sheet as equilibrium state, the linearized gyrokinetic Vlasov equation is solved for electrostatic fluctuations with period of the order of the electron bounce period (a few seconds). The particle motion is restricted to its first Fourier component along the magnetic field and this allows the complete time integration of the non local perturbed distribution functions. The dispersion relation for electrostatic modes is finally obtained through the quasineutrality condition.The new feature of the present model is the inclusion of diamagnetic drift effects due to the density gradient in the tail. It is well known in MHD theory that drift waves are driven unstable through collisions or other dissipative effects. Here electrostatic drift waves are revisited in this more complete kinetic model including bouncing electrons and finite Larmor radius effects. A new mode has been found with original propagation proprieties. It is moreover mildly unstable due to electron or ion damping (dissipative instability).

  7. Vlasov simulations of electron-ion collision effects on damping of electron plasma waves

    NASA Astrophysics Data System (ADS)

    Banks, J. W.; Brunner, S.; Berger, R. L.; Tran, T. M.

    2016-03-01

    Collisional effects can play an essential role in the dynamics of plasma waves by setting a minimum damping rate and by interfering with wave-particle resonances. Kinetic simulations of the effects of electron-ion pitch angle scattering on Electron Plasma Waves (EPWs) are presented here. In particular, the effects of such collisions on the frequency and damping of small-amplitude EPWs for a range of collision rates and wave phase velocities are computed and compared with theory. Both the Vlasov simulations and linear kinetic theory find the direct contribution of electron-ion collisions to wave damping significantly reduced from that obtained through linearized fluid theory. To our knowledge, this simple result has not been published before. Simulations have been carried out using a grid-based (Vlasov) approach, based on a high-order conservative finite difference method for discretizing the Fokker-Planck equation describing the evolution of the electron distribution function. Details of the implementation of the collision operator within this framework are presented. Such a grid-based approach, which is not subject to numerical noise, is of particular interest for the accurate measurements of the wave damping rates.

  8. A Fully-Implicit, Ion-Electron, Vlasov-Poisson Algorithm

    NASA Astrophysics Data System (ADS)

    Taitano, William; Knoll, Dana; Chacon, Luis

    2010-11-01

    The Jacobian-Free-Newton-Krylov method (JFNK) is an advanced non- linear alogorithm that allows solution to a coupled systems of non-linear equations [1]. We put forth a new JFNK-based implicit plasma simulation algorithm. We have studied this algorithm within the context of a two-species Vlasov-Poisson system where the Vlasov equations are solved in an Eulerian frame [2]. We have investigated the route of non-linear-elimination/kinetic- enslavement to reduce the size of block Jacobian matrix in order to solve the field-kinetic system implicitly. The non-linear- elimination/kinetic-enslavement technique allows reduction in the size of non-linear system but still retains high order temporal accuracy and strong non-linear coupling. Our new algorithm make implicit time-dependent, coupled, field-kinetic systems more attractive. As will be shown, a fully implicit run was able to achieve 22 times speed-up compared to the explicit run for our ion-acoustic-showckwave simulation [2].[4pt] [1] D.A. Knoll and D.E. Keyes, J. Comput. Phys. vol. 193 (2004)[0pt] [2] W.T. Taitano, Masters Thesis, Nuclear Engineering, University of Idaho (2010)

  9. Gyrokinetic Vlasov-Poisson simulation in slab geometry using the conservative IDO scheme

    NASA Astrophysics Data System (ADS)

    Imadera, Kenji; Kishimoto, Yasuaki; Li, Jiquan; Saito, Daisuke; Utsumi, Takayuki

    2008-11-01

    We have introduced the IDO-CF (Conservative Form of Interpolated Differential Operator) scheme [1], which is one of the multi-moment schemes and has been applied to various CFD problems, in solving a Vlasov-Poisson system. The IDO scheme is found to be efficient in capturing a sharp domain interface like shock propagation, and in introducing dissipations like particle collision and also external source/sink terms. Furthermore, the IDO-CF scheme has exact mass conservation properties, so that we can apply it to the problems that need long time scale simulations. We first apply the scheme in studying the nonlinear Landau damping and two-stream instability. We have investigated the conservation property of the total mass, energy and entropy, and found that the IDO-CF scheme allows stable simulation over many bounce periods keeping higher accuracy than other multi-moment schemes. We have also developed a gyrokinetic full-f Vlasov code with the IDO-CF scheme in studying the slab ITG driven turbulence. [1] Y.Imai et al., J. Comput. Phys. 227, 2263(2008).

  10. VLASOV SIMULATIONS OF MULTI-ION PLASMA TURBULENCE IN THE SOLAR WIND

    SciTech Connect

    Perrone, D.; Valentini, F.; Servidio, S.; Dalena, S.; Veltri, P.

    2013-01-10

    Hybrid Vlasov-Maxwell simulations are employed to investigate the role of kinetic effects in a two-dimensional turbulent multi-ion plasma, composed of protons, alpha particles, and fluid electrons. In the typical conditions of the solar-wind environment, and in situations of decaying turbulence, the numerical results show that the velocity distribution functions of both ion species depart from the typical configuration of thermal equilibrium. These non-Maxwellian features are quantified through the statistical analysis of the temperature anisotropy, for both protons and alpha particles, in the reference frame given by the local magnetic field. Anisotropy is found to be higher in regions of high magnetic stress. Both ion species manifest a preferentially perpendicular heating, although the anisotropy is more pronounced for the alpha particles, according to solar wind observations. The anisotropy of the alpha particle, moreover, is correlated to the proton anisotropy and also depends on the local differential flow between the two species. Evident distortions of the particle distribution functions are present, with the production of bumps along the direction of the local magnetic field. The physical phenomenology recovered in these numerical simulations reproduces very common measurements in the turbulent solar wind, suggesting that the multi-ion Vlasov model constitutes a valid approach to understanding the nature of complex kinetic effects in astrophysical plasmas.

  11. Vlasov Simulations of Multi-ion Plasma Turbulence in the Solar Wind

    NASA Astrophysics Data System (ADS)

    Perrone, D.; Valentini, F.; Servidio, S.; Dalena, S.; Veltri, P.

    2013-01-01

    Hybrid Vlasov-Maxwell simulations are employed to investigate the role of kinetic effects in a two-dimensional turbulent multi-ion plasma, composed of protons, alpha particles, and fluid electrons. In the typical conditions of the solar-wind environment, and in situations of decaying turbulence, the numerical results show that the velocity distribution functions of both ion species depart from the typical configuration of thermal equilibrium. These non-Maxwellian features are quantified through the statistical analysis of the temperature anisotropy, for both protons and alpha particles, in the reference frame given by the local magnetic field. Anisotropy is found to be higher in regions of high magnetic stress. Both ion species manifest a preferentially perpendicular heating, although the anisotropy is more pronounced for the alpha particles, according to solar wind observations. The anisotropy of the alpha particle, moreover, is correlated to the proton anisotropy and also depends on the local differential flow between the two species. Evident distortions of the particle distribution functions are present, with the production of bumps along the direction of the local magnetic field. The physical phenomenology recovered in these numerical simulations reproduces very common measurements in the turbulent solar wind, suggesting that the multi-ion Vlasov model constitutes a valid approach to understanding the nature of complex kinetic effects in astrophysical plasmas.

  12. Non-modal stability analysis and transient growth in a magnetized Vlasov plasma

    NASA Astrophysics Data System (ADS)

    Ratushnaya, V.; Samtaney, R.

    2014-12-01

    Collisionless plasmas, such as those encountered in tokamaks, exhibit a rich variety of instabilities. The physical origin, triggering mechanisms and fundamental understanding of many plasma instabilities, however, are still open problems. We investigate the stability properties of a 3-dimensional collisionless Vlasov plasma in a stationary homogeneous magnetic field. We narrow the scope of our investigation to the case of Maxwellian plasma and examine its evolution with an electrostatic approximation. For the first time using a fully kinetic approach we show the emergence of the local instability, a transient growth, followed by classical Landau damping in a stable magnetized plasma. We show that the linearized Vlasov operator is non-normal leading to the algebraic growth of the perturbations using non-modal stability theory. The typical time scales of the obtained instabilities are of the order of several plasma periods. The first-order distribution function and the corresponding electric field are calculated and the dependence on the magnetic field and perturbation parameters is studied. Our results offer a new scenario of the emergence and development of plasma instabilities on the kinetic scale.

  13. Parallel stitching of 2D materials

    DOE PAGESBeta

    Ling, Xi; Wu, Lijun; Lin, Yuxuan; Ma, Qiong; Wang, Ziqiang; Song, Yi; Yu, Lili; Huang, Shengxi; Fang, Wenjing; Zhang, Xu; et al

    2016-01-27

    Diverse parallel stitched 2D heterostructures, including metal–semiconductor, semiconductor–semiconductor, and insulator–semiconductor, are synthesized directly through selective “sowing” of aromatic molecules as the seeds in the chemical vapor deposition (CVD) method. Lastly, the methodology enables the large-scale fabrication of lateral heterostructures, which offers tremendous potential for its application in integrated circuits.

  14. Parallel Stitching of 2D Materials.

    PubMed

    Ling, Xi; Lin, Yuxuan; Ma, Qiong; Wang, Ziqiang; Song, Yi; Yu, Lili; Huang, Shengxi; Fang, Wenjing; Zhang, Xu; Hsu, Allen L; Bie, Yaqing; Lee, Yi-Hsien; Zhu, Yimei; Wu, Lijun; Li, Ju; Jarillo-Herrero, Pablo; Dresselhaus, Mildred; Palacios, Tomás; Kong, Jing

    2016-03-01

    Diverse parallel stitched 2D heterostructures, including metal-semiconductor, semiconductor-semiconductor, and insulator-semiconductor, are synthesized directly through selective "sowing" of aromatic molecules as the seeds in the chemical vapor deposition (CVD) method. The methodology enables the large-scale fabrication of lateral heterostructures, which offers tremendous potential for its application in integrated circuits. PMID:26813882

  15. Baby universes in 2d quantum gravity

    NASA Astrophysics Data System (ADS)

    Ambjørn, Jan; Jain, Sanjay; Thorleifsson, Gudmar

    1993-06-01

    We investigate the fractal structure of 2d quantum gravity, both for pure gravity and for gravity coupled to multiple gaussian fields and for gravity coupled to Ising spins. The roughness of the surfaces is described in terms of baby universes and using numerical simulations we measure their distribution which is related to the string susceptibility exponent γstring.

  16. Computations of two-fluid models based on a simple and robust hybrid primitive variable Riemann solver with AUSMD

    NASA Astrophysics Data System (ADS)

    Niu, Yang-Yao

    2016-03-01

    This paper is to continue our previous work in 2008 on solving a two-fluid model for compressible liquid-gas flows. We proposed a pressure-velocity based diffusion term original derived from AUSMD scheme of Wada and Liou in 1997 to enhance its robustness. The proposed AUSMD schemes have been applied to gas and liquid fluids universally to capture fluid discontinuities, such as the fluid interfaces and shock waves, accurately for the Ransom's faucet problem, air-water shock tube problems and 2D shock-water liquid interaction problems. However, the proposed scheme failed at computing liquid-gas interfaces in problems under large ratios of pressure, density and volume of fraction. The numerical instability has been remedied by Chang and Liou in 2007 using the exact Riemann solver to enhance the accuracy and stability of numerical flux across the liquid-gas interface. Here, instead of the exact Riemann solver, we propose a simple AUSMD type primitive variable Riemann solver (PVRS) which can successfully solve 1D stiffened water-air shock tube and 2D shock-gas interaction problems under large ratios of pressure, density and volume of fraction without the expensive cost of tedious computer time. In addition, the proposed approach is shown to deliver a good resolution of the shock-front, rarefaction and cavitation inside the evolution of high-speed droplet impact on the wall.

  17. Multi-dimensional Vlasov Simulations and Modeling of Trapped-Electron Sideband and Filamentation Instabilities of Non-Linear Electron Plasma Waves

    NASA Astrophysics Data System (ADS)

    Berger, Richard

    2014-10-01

    Vlasov simulations of large amplitude electron plasma waves (EPWs), which play an essential role in laser-fusion relevant plasmas, have been carried out in 1D and 2D and compared with theoretical models. The electrons trapped in the wave troughs are shown to be well described by an ``adiabatic'' distribution with a corresponding frequency shift of the EPW. Trapped particles play an essential role in the mechanisms underlying sideband instabilities that may affect the EPW, in particular longitudinal instabilities of trapped particle instability (TPI) type, as well as transverse instabilities of kinetic filamentation type. A systematic study of the spectrum of linearly unstable modes in 1D and 2D systems, including their growth rates and wavevectors, has been completed by scanning the amplitude and wavenumber of the initial wave. Simulation results for the TPI are successfully compared with Kruer's reduced model and are also analyzed for the development of the ``negative mass instability''. In the non-linear phase, both the TPI and filamentation instabilities are shown to lead to a rapid loss of field energy and an associated increase in electron kinetic energy. Saturation of the instabilities is reached in conjunction with the development of significant regions in phase space where trajectories of particles, resonant with the initial wave, become chaotic. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344 and funded by the Laboratory Research and Development Program at LLNL under project tracking code 12-ERD.

  18. Application of 2D Non-Graphene Materials and 2D Oxide Nanostructures for Biosensing Technology

    PubMed Central

    Shavanova, Kateryna; Bakakina, Yulia; Burkova, Inna; Shtepliuk, Ivan; Viter, Roman; Ubelis, Arnolds; Beni, Valerio; Starodub, Nickolaj; Yakimova, Rositsa; Khranovskyy, Volodymyr

    2016-01-01

    The discovery of graphene and its unique properties has inspired researchers to try to invent other two-dimensional (2D) materials. After considerable research effort, a distinct “beyond graphene” domain has been established, comprising the library of non-graphene 2D materials. It is significant that some 2D non-graphene materials possess solid advantages over their predecessor, such as having a direct band gap, and therefore are highly promising for a number of applications. These applications are not limited to nano- and opto-electronics, but have a strong potential in biosensing technologies, as one example. However, since most of the 2D non-graphene materials have been newly discovered, most of the research efforts are concentrated on material synthesis and the investigation of the properties of the material. Applications of 2D non-graphene materials are still at the embryonic stage, and the integration of 2D non-graphene materials into devices is scarcely reported. However, in recent years, numerous reports have blossomed about 2D material-based biosensors, evidencing the growing potential of 2D non-graphene materials for biosensing applications. This review highlights the recent progress in research on the potential of using 2D non-graphene materials and similar oxide nanostructures for different types of biosensors (optical and electrochemical). A wide range of biological targets, such as glucose, dopamine, cortisol, DNA, IgG, bisphenol, ascorbic acid, cytochrome and estradiol, has been reported to be successfully detected by biosensors with transducers made of 2D non-graphene materials. PMID:26861346

  19. Application of 2D Non-Graphene Materials and 2D Oxide Nanostructures for Biosensing Technology.

    PubMed

    Shavanova, Kateryna; Bakakina, Yulia; Burkova, Inna; Shtepliuk, Ivan; Viter, Roman; Ubelis, Arnolds; Beni, Valerio; Starodub, Nickolaj; Yakimova, Rositsa; Khranovskyy, Volodymyr

    2016-01-01

    The discovery of graphene and its unique properties has inspired researchers to try to invent other two-dimensional (2D) materials. After considerable research effort, a distinct "beyond graphene" domain has been established, comprising the library of non-graphene 2D materials. It is significant that some 2D non-graphene materials possess solid advantages over their predecessor, such as having a direct band gap, and therefore are highly promising for a number of applications. These applications are not limited to nano- and opto-electronics, but have a strong potential in biosensing technologies, as one example. However, since most of the 2D non-graphene materials have been newly discovered, most of the research efforts are concentrated on material synthesis and the investigation of the properties of the material. Applications of 2D non-graphene materials are still at the embryonic stage, and the integration of 2D non-graphene materials into devices is scarcely reported. However, in recent years, numerous reports have blossomed about 2D material-based biosensors, evidencing the growing potential of 2D non-graphene materials for biosensing applications. This review highlights the recent progress in research on the potential of using 2D non-graphene materials and similar oxide nanostructures for different types of biosensors (optical and electrochemical). A wide range of biological targets, such as glucose, dopamine, cortisol, DNA, IgG, bisphenol, ascorbic acid, cytochrome and estradiol, has been reported to be successfully detected by biosensors with transducers made of 2D non-graphene materials. PMID:26861346

  20. jShyLU Scalable Hybrid Preconditioner and Solver

    2012-09-11

    ShyLU is numerical software to solve sparse linear systems of equations. ShyLU uses a hybrid direct-iterative Schur complement method, and may be used either as a preconditioner or as a solver. ShyLU is parallel and optimized for a single compute Solver node. ShyLU will be a package in the Trilinos software framework.

  1. Experiences with linear solvers for oil reservoir simulation problems

    SciTech Connect

    Joubert, W.; Janardhan, R.; Biswas, D.; Carey, G.

    1996-12-31

    This talk will focus on practical experiences with iterative linear solver algorithms used in conjunction with Amoco Production Company`s Falcon oil reservoir simulation code. The goal of this study is to determine the best linear solver algorithms for these types of problems. The results of numerical experiments will be presented.

  2. Shape reanalysis and sensitivities utilizing preconditioned iterative boundary solvers

    NASA Technical Reports Server (NTRS)

    Guru Prasad, K.; Kane, J. H.

    1992-01-01

    The computational advantages associated with the utilization of preconditined iterative equation solvers are quantified for the reanalysis of perturbed shapes using continuum structural boundary element analysis (BEA). Both single- and multi-zone three-dimensional problems are examined. Significant reductions in computer time are obtained by making use of previously computed solution vectors and preconditioners in subsequent analyses. The effectiveness of this technique is demonstrated for the computation of shape response sensitivities required in shape optimization. Computer times and accuracies achieved using the preconditioned iterative solvers are compared with those obtained via direct solvers and implicit differentiation of the boundary integral equations. It is concluded that this approach employing preconditioned iterative equation solvers in reanalysis and sensitivity analysis can be competitive with if not superior to those involving direct solvers.

  3. A real-time impurity solver for DMFT

    NASA Astrophysics Data System (ADS)

    Kim, Hyungwon; Aron, Camille; Han, Jong E.; Kotliar, Gabriel

    Dynamical mean-field theory (DMFT) offers a non-perturbative approach to problems with strongly correlated electrons. The method heavily relies on the ability to numerically solve an auxiliary Anderson-type impurity problem. While powerful Matsubara-frequency solvers have been developed over the past two decades to tackle equilibrium situations, the status of real-time impurity solvers that could compete with Matsubara-frequency solvers and be readily generalizable to non-equilibrium situations is still premature. We present a real-time solver which is based on a quantum Master equation description of the dissipative dynamics of the impurity and its exact diagonalization. As a benchmark, we illustrate the strengths of our solver in the context of the equilibrium Mott-insulator transition of the one-band Hubbard model and compare it with iterative perturbation theory (IPT) method. Finally, we discuss its direct application to a nonequilibrium situation.

  4. Linear iterative solvers for implicit ODE methods

    NASA Technical Reports Server (NTRS)

    Saylor, Paul E.; Skeel, Robert D.

    1990-01-01

    The numerical solution of stiff initial value problems, which lead to the problem of solving large systems of mildly nonlinear equations are considered. For many problems derived from engineering and science, a solution is possible only with methods derived from iterative linear equation solvers. A common approach to solving the nonlinear equations is to employ an approximate solution obtained from an explicit method. The error is examined to determine how it is distributed among the stiff and non-stiff components, which bears on the choice of an iterative method. The conclusion is that error is (roughly) uniformly distributed, a fact that suggests the Chebyshev method (and the accompanying Manteuffel adaptive parameter algorithm). This method is described, also commenting on Richardson's method and its advantages for large problems. Richardson's method and the Chebyshev method with the Mantueffel algorithm are applied to the solution of the nonlinear equations by Newton's method.

  5. Scalable Adaptive Multilevel Solvers for Multiphysics Problems

    SciTech Connect

    Xu, Jinchao

    2014-12-01

    In this project, we investigated adaptive, parallel, and multilevel methods for numerical modeling of various real-world applications, including Magnetohydrodynamics (MHD), complex fluids, Electromagnetism, Navier-Stokes equations, and reservoir simulation. First, we have designed improved mathematical models and numerical discretizaitons for viscoelastic fluids and MHD. Second, we have derived new a posteriori error estimators and extended the applicability of adaptivity to various problems. Third, we have developed multilevel solvers for solving scalar partial differential equations (PDEs) as well as coupled systems of PDEs, especially on unstructured grids. Moreover, we have integrated the study between adaptive method and multilevel methods, and made significant efforts and advances in adaptive multilevel methods of the multi-physics problems.

  6. Optimising a parallel conjugate gradient solver

    SciTech Connect

    Field, M.R.

    1996-12-31

    This work arises from the introduction of a parallel iterative solver to a large structural analysis finite element code. The code is called FEX and it was developed at Hitachi`s Mechanical Engineering Laboratory. The FEX package can deal with a large range of structural analysis problems using a large number of finite element techniques. FEX can solve either stress or thermal analysis problems of a range of different types from plane stress to a full three-dimensional model. These problems can consist of a number of different materials which can be modelled by a range of material models. The structure being modelled can have the load applied at either a point or a surface, or by a pressure, a centrifugal force or just gravity. Alternatively a thermal load can be applied with a given initial temperature. The displacement of the structure can be constrained by having a fixed boundary or by prescribing the displacement at a boundary.

  7. General purpose nonlinear system solver based on Newton-Krylov method.

    2013-12-01

    KINSOL is part of a software family called SUNDIALS: SUite of Nonlinear and Differential/Algebraic equation Solvers [1]. KINSOL is a general-purpose nonlinear system solver based on Newton-Krylov and fixed-point solver technologies [2].

  8. Static & Dynamic Response of 2D Solids

    1996-07-15

    NIKE2D is an implicit finite-element code for analyzing the finite deformation, static and dynamic response of two-dimensional, axisymmetric, plane strain, and plane stress solids. The code is fully vectorized and available on several computing platforms. A number of material models are incorporated to simulate a wide range of material behavior including elasto-placicity, anisotropy, creep, thermal effects, and rate dependence. Slideline algorithms model gaps and sliding along material interfaces, including interface friction, penetration and single surfacemore » contact. Interactive-graphics and rezoning is included for analyses with large mesh distortions. In addition to quasi-Newton and arc-length procedures, adaptive algorithms can be defined to solve the implicit equations using the solution language ISLAND. Each of these capabilities and more make NIKE2D a robust analysis tool.« less

  9. Stochastic Inversion of 2D Magnetotelluric Data

    2010-07-01

    The algorithm is developed to invert 2D magnetotelluric (MT) data based on sharp boundary parametrization using a Bayesian framework. Within the algorithm, we consider the locations and the resistivity of regions formed by the interfaces are as unknowns. We use a parallel, adaptive finite-element algorithm to forward simulate frequency-domain MT responses of 2D conductivity structure. Those unknown parameters are spatially correlated and are described by a geostatistical model. The joint posterior probability distribution function ismore » explored by Markov Chain Monte Carlo (MCMC) sampling methods. The developed stochastic model is effective for estimating the interface locations and resistivity. Most importantly, it provides details uncertainty information on each unknown parameter. Hardware requirements: PC, Supercomputer, Multi-platform, Workstation; Software requirements C and Fortan; Operation Systems/version is Linux/Unix or Windows« less

  10. Stochastic Inversion of 2D Magnetotelluric Data

    SciTech Connect

    Chen, Jinsong

    2010-07-01

    The algorithm is developed to invert 2D magnetotelluric (MT) data based on sharp boundary parametrization using a Bayesian framework. Within the algorithm, we consider the locations and the resistivity of regions formed by the interfaces are as unknowns. We use a parallel, adaptive finite-element algorithm to forward simulate frequency-domain MT responses of 2D conductivity structure. Those unknown parameters are spatially correlated and are described by a geostatistical model. The joint posterior probability distribution function is explored by Markov Chain Monte Carlo (MCMC) sampling methods. The developed stochastic model is effective for estimating the interface locations and resistivity. Most importantly, it provides details uncertainty information on each unknown parameter. Hardware requirements: PC, Supercomputer, Multi-platform, Workstation; Software requirements C and Fortan; Operation Systems/version is Linux/Unix or Windows

  11. Explicit 2-D Hydrodynamic FEM Program

    1996-08-07

    DYNA2D* is a vectorized, explicit, two-dimensional, axisymmetric and plane strain finite element program for analyzing the large deformation dynamic and hydrodynamic response of inelastic solids. DYNA2D* contains 13 material models and 9 equations of state (EOS) to cover a wide range of material behavior. The material models implemented in all machine versions are: elastic, orthotropic elastic, kinematic/isotropic elastic plasticity, thermoelastoplastic, soil and crushable foam, linear viscoelastic, rubber, high explosive burn, isotropic elastic-plastic, temperature-dependent elastic-plastic. Themore » isotropic and temperature-dependent elastic-plastic models determine only the deviatoric stresses. Pressure is determined by one of 9 equations of state including linear polynomial, JWL high explosive, Sack Tuesday high explosive, Gruneisen, ratio of polynomials, linear polynomial with energy deposition, ignition and growth of reaction in HE, tabulated compaction, and tabulated.« less

  12. Schottky diodes from 2D germanane

    NASA Astrophysics Data System (ADS)

    Sahoo, Nanda Gopal; Esteves, Richard J.; Punetha, Vinay Deep; Pestov, Dmitry; Arachchige, Indika U.; McLeskey, James T.

    2016-07-01

    We report on the fabrication and characterization of a Schottky diode made using 2D germanane (hydrogenated germanene). When compared to germanium, the 2D structure has higher electron mobility, an optimal band-gap, and exceptional stability making germanane an outstanding candidate for a variety of opto-electronic devices. One-atom-thick sheets of hydrogenated puckered germanium atoms have been synthesized from a CaGe2 framework via intercalation and characterized by XRD, Raman, and FTIR techniques. The material was then used to fabricate Schottky diodes by suspending the germanane in benzonitrile and drop-casting it onto interdigitated metal electrodes. The devices demonstrate significant rectifying behavior and the outstanding potential of this material.

  13. Layer Engineering of 2D Semiconductor Junctions.

    PubMed

    He, Yongmin; Sobhani, Ali; Lei, Sidong; Zhang, Zhuhua; Gong, Yongji; Jin, Zehua; Zhou, Wu; Yang, Yingchao; Zhang, Yuan; Wang, Xifan; Yakobson, Boris; Vajtai, Robert; Halas, Naomi J; Li, Bo; Xie, Erqing; Ajayan, Pulickel

    2016-07-01

    A new concept for junction fabrication by connecting multiple regions with varying layer thicknesses, based on the thickness dependence, is demonstrated. This type of junction is only possible in super-thin-layered 2D materials, and exhibits similar characteristics as p-n junctions. Rectification and photovoltaic effects are observed in chemically homogeneous MoSe2 junctions between domains of different thicknesses. PMID:27136275

  14. 2dF mechanical engineering

    NASA Astrophysics Data System (ADS)

    Smith, Greg; Lankshear, Allan

    1998-07-01

    2dF is a multi-object instrument mounted at prime focus at the AAT capable of spectroscopic analysis of 400 objects in a single 2 degree field. It also prepares a second 2 degree 400 object field while the first field is being observed. At its heart is a high precision robotic positioner that places individual fiber end magnetic buttons on one of two field plates. The button gripper is carried on orthogonal gantries powered by linear synchronous motors and contains a TV camera which precisely locates backlit buttons to allow placement in user defined locations to 10 (mu) accuracy. Fiducial points on both plates can also be observed by the camera to allow repeated checks on positioning accuracy. Field plates rotate to follow apparent sky rotation. The spectrographs both analyze light from the 200 observing fibers each and back- illuminate the 400 fibers being re-positioned during the observing run. The 2dF fiber position and spectrograph system is a large and complex instrument located at the prime focus of the Anglo Australian Telescope. The mechanical design has departed somewhat from the earlier concepts of Gray et al, but still reflects the audacity of those first ideas. The positioner is capable of positioning 400 fibers on a field plate while another 400 fibers on another plate are observing at the focus of the telescope and feeding the twin spectrographs. When first proposed it must have seemed like ingenuity unfettered by caution. Yet now it works, and works wonderfully well. 2dF is a system which functions as the result of the combined and coordinated efforts of the astronomers, the mechanical designers and tradespeople, the electronic designers, the programmers, the support staff at the telescope, and the manufacturing subcontractors. The mechanical design of the 2dF positioner and spectrographs was carried out by the mechanical engineering staff of the AAO and the majority of the manufacture was carried out in the AAO workshops.

  15. Realistic and efficient 2D crack simulation

    NASA Astrophysics Data System (ADS)

    Yadegar, Jacob; Liu, Xiaoqing; Singh, Abhishek

    2010-04-01

    Although numerical algorithms for 2D crack simulation have been studied in Modeling and Simulation (M&S) and computer graphics for decades, realism and computational efficiency are still major challenges. In this paper, we introduce a high-fidelity, scalable, adaptive and efficient/runtime 2D crack/fracture simulation system by applying the mathematically elegant Peano-Cesaro triangular meshing/remeshing technique to model the generation of shards/fragments. The recursive fractal sweep associated with the Peano-Cesaro triangulation provides efficient local multi-resolution refinement to any level-of-detail. The generated binary decomposition tree also provides efficient neighbor retrieval mechanism used for mesh element splitting and merging with minimal memory requirements essential for realistic 2D fragment formation. Upon load impact/contact/penetration, a number of factors including impact angle, impact energy, and material properties are all taken into account to produce the criteria of crack initialization, propagation, and termination leading to realistic fractal-like rubble/fragments formation. The aforementioned parameters are used as variables of probabilistic models of cracks/shards formation, making the proposed solution highly adaptive by allowing machine learning mechanisms learn the optimal values for the variables/parameters based on prior benchmark data generated by off-line physics based simulation solutions that produce accurate fractures/shards though at highly non-real time paste. Crack/fracture simulation has been conducted on various load impacts with different initial locations at various impulse scales. The simulation results demonstrate that the proposed system has the capability to realistically and efficiently simulate 2D crack phenomena (such as window shattering and shards generation) with diverse potentials in military and civil M&S applications such as training and mission planning.

  16. Compact 2-D graphical representation of DNA

    NASA Astrophysics Data System (ADS)

    Randić, Milan; Vračko, Marjan; Zupan, Jure; Novič, Marjana

    2003-05-01

    We present a novel 2-D graphical representation for DNA sequences which has an important advantage over the existing graphical representations of DNA in being very compact. It is based on: (1) use of binary labels for the four nucleic acid bases, and (2) use of the 'worm' curve as template on which binary codes are placed. The approach is illustrated on DNA sequences of the first exon of human β-globin and gorilla β-globin.

  17. 2D materials: Graphene and others

    NASA Astrophysics Data System (ADS)

    Bansal, Suneev Anil; Singh, Amrinder Pal; Kumar, Suresh

    2016-05-01

    Present report reviews the recent advancements in new atomically thick 2D materials. Materials covered in this review are Graphene, Silicene, Germanene, Boron Nitride (BN) and Transition metal chalcogenides (TMC). These materials show extraordinary mechanical, electronic and optical properties which make them suitable candidates for future applications. Apart from unique properties, tune-ability of highly desirable properties of these materials is also an important area to be emphasized on.

  18. TACO (2D AND 3D). Taco

    SciTech Connect

    Mason, W.E.

    1983-03-01

    A set of finite element codes for the solution of nonlinear, two-dimensional (TACO2D) and three-dimensional (TACO3D) heat transfer problems. Performs linear and nonlinear analyses of both transient and steady state heat transfer problems. Has the capability to handle time or temperature dependent material properties. Materials may be either isotropic or orthotropic. A variety of time and temperature dependent boundary conditions and loadings are available including temperature, flux, convection, radiation, and internal heat generation.

  19. Tomosynthesis imaging with 2D scanning trajectories

    NASA Astrophysics Data System (ADS)

    Khare, Kedar; Claus, Bernhard E. H.; Eberhard, Jeffrey W.

    2011-03-01

    Tomosynthesis imaging in chest radiography provides volumetric information with the potential for improved diagnostic value when compared to the standard AP or LAT projections. In this paper we explore the image quality benefits of 2D scanning trajectories when coupled with advanced image reconstruction approaches. It is intuitively clear that 2D trajectories provide projection data that is more complete in terms of Radon space filling, when compared with conventional tomosynthesis using a linearly scanned source. Incorporating this additional information for obtaining improved image quality is, however, not a straightforward problem. The typical tomosynthesis reconstruction algorithms are based on direct inversion methods e.g. Filtered Backprojection (FBP) or iterative algorithms that are variants of the Algebraic Reconstruction Technique (ART). The FBP approach is fast and provides high frequency details in the image but at the same time introduces streaking artifacts degrading the image quality. The iterative methods can reduce the image artifacts by using image priors but suffer from a slow convergence rate, thereby producing images lacking high frequency details. In this paper we propose using a fast converging optimal gradient iterative scheme that has advantages of both the FBP and iterative methods in that it produces images with high frequency details while reducing the image artifacts. We show that using favorable 2D scanning trajectories along with the proposed reconstruction method has the advantage of providing improved depth information for structures such as the spine and potentially producing images with more isotropic resolution.

  20. MAGNUM-2D computer code: user's guide

    SciTech Connect

    England, R.L.; Kline, N.W.; Ekblad, K.J.; Baca, R.G.

    1985-01-01

    Information relevant to the general use of the MAGNUM-2D computer code is presented. This computer code was developed for the purpose of modeling (i.e., simulating) the thermal and hydraulic conditions in the vicinity of a waste package emplaced in a deep geologic repository. The MAGNUM-2D computer computes (1) the temperature field surrounding the waste package as a function of the heat generation rate of the nuclear waste and thermal properties of the basalt and (2) the hydraulic head distribution and associated groundwater flow fields as a function of the temperature gradients and hydraulic properties of the basalt. MAGNUM-2D is a two-dimensional numerical model for transient or steady-state analysis of coupled heat transfer and groundwater flow in a fractured porous medium. The governing equations consist of a set of coupled, quasi-linear partial differential equations that are solved using a Galerkin finite-element technique. A Newton-Raphson algorithm is embedded in the Galerkin functional to formulate the problem in terms of the incremental changes in the dependent variables. Both triangular and quadrilateral finite elements are used to represent the continuum portions of the spatial domain. Line elements may be used to represent discrete conduits. 18 refs., 4 figs., 1 tab.

  1. Engineering light outcoupling in 2D materials.

    PubMed

    Lien, Der-Hsien; Kang, Jeong Seuk; Amani, Matin; Chen, Kevin; Tosun, Mahmut; Wang, Hsin-Ping; Roy, Tania; Eggleston, Michael S; Wu, Ming C; Dubey, Madan; Lee, Si-Chen; He, Jr-Hau; Javey, Ali

    2015-02-11

    When light is incident on 2D transition metal dichalcogenides (TMDCs), it engages in multiple reflections within underlying substrates, producing interferences that lead to enhancement or attenuation of the incoming and outgoing strength of light. Here, we report a simple method to engineer the light outcoupling in semiconducting TMDCs by modulating their dielectric surroundings. We show that by modulating the thicknesses of underlying substrates and capping layers, the interference caused by substrate can significantly enhance the light absorption and emission of WSe2, resulting in a ∼11 times increase in Raman signal and a ∼30 times increase in the photoluminescence (PL) intensity of WSe2. On the basis of the interference model, we also propose a strategy to control the photonic and optoelectronic properties of thin-layer WSe2. This work demonstrates the utilization of outcoupling engineering in 2D materials and offers a new route toward the realization of novel optoelectronic devices, such as 2D LEDs and solar cells. PMID:25602462

  2. 2D superconductivity by ionic gating

    NASA Astrophysics Data System (ADS)

    Iwasa, Yoshi

    2D superconductivity is attracting a renewed interest due to the discoveries of new highly crystalline 2D superconductors in the past decade. Superconductivity at the oxide interfaces triggered by LaAlO3/SrTiO3 has become one of the promising routes for creation of new 2D superconductors. Also, the MBE grown metallic monolayers including FeSe are also offering a new platform of 2D superconductors. In the last two years, there appear a variety of monolayer/bilayer superconductors fabricated by CVD or mechanical exfoliation. Among these, electric field induced superconductivity by electric double layer transistor (EDLT) is a unique platform of 2D superconductivity, because of its ability of high density charge accumulation, and also because of the versatility in terms of materials, stemming from oxides to organics and layered chalcogenides. In this presentation, the following issues of electric filed induced superconductivity will be addressed; (1) Tunable carrier density, (2) Weak pinning, (3) Absence of inversion symmetry. (1) Since the sheet carrier density is quasi-continuously tunable from 0 to the order of 1014 cm-2, one is able to establish an electronic phase diagram of superconductivity, which will be compared with that of bulk superconductors. (2) The thickness of superconductivity can be estimated as 2 - 10 nm, dependent on materials, and is much smaller than the in-plane coherence length. Such a thin but low resistance at normal state results in extremely weak pinning beyond the dirty Boson model in the amorphous metallic films. (3) Due to the electric filed, the inversion symmetry is inherently broken in EDLT. This feature appears in the enhancement of Pauli limit of the upper critical field for the in-plane magnetic fields. In transition metal dichalcogenide with a substantial spin-orbit interactions, we were able to confirm the stabilization of Cooper pair due to its spin-valley locking. This work has been supported by Grant-in-Aid for Specially

  3. A New Continuation Criterion for the Relativistic Vlasov-Maxwell System

    NASA Astrophysics Data System (ADS)

    Luk, Jonathan; Strain, Robert M.

    2014-11-01

    The global existence of solutions to the relativistic Vlasov-Maxwell system given sufficiently regular finite energy initial data is a longstanding open problem. The main result of Glassey and Strauss (Arch Ration Mech Anal 92:59-90, 1986) shows that a solution ( f, E, B) remains C 1 as long as the momentum support of f remains bounded. Alternate proofs were later given by Bouchut et al. (Arch Ration Mech Anal 170:1-15, 2003) and Klainerman and Staffilani (Commun Pure Appl Anal 1:103-125, 2002). We show that only the boundedness of the momentum support of f after projecting to any two dimensional plane is needed for ( f, E, B) to remain C 1.

  4. The Hamiltonian structure and Euler-Poincare formulation of the Vlasov-Maxwell and gyrokinetic systems

    SciTech Connect

    Squire, J.; Tang, W. M.; Qin, H.; Chandre, C.

    2013-02-15

    We present a new variational principle for the gyrokinetic system, similar to the Maxwell-Vlasov action presented in H. Cendra et al., [J. Math. Phys. 39, 3138 (1998)]. The variational principle is in the Eulerian frame and based on constrained variations of the phase space fluid velocity and particle distribution function. Using a Legendre transform, we explicitly derive the field theoretic Hamiltonian structure of the system. This is carried out with a modified Dirac theory of constraints, which is used to construct meaningful brackets from those obtained directly from Euler-Poincare theory. Possible applications of these formulations include continuum geometric integration techniques, large-eddy simulation models, and Casimir type stability methods.

  5. Vlasov modelling of laser-driven collisionless shock acceleration of protons

    NASA Astrophysics Data System (ADS)

    Svedung Wettervik, B.; DuBois, T. C.; Fülöp, T.

    2016-05-01

    Ion acceleration due to the interaction between a short high-intensity laser pulse and a moderately overdense plasma target is studied using Eulerian Vlasov-Maxwell simulations. The effects of variations in the plasma density profile and laser pulse parameters are investigated, and the interplay of collisionless shock and target normal sheath acceleration is analyzed. It is shown that the use of a layered-target with a combination of light and heavy ions, on the front and rear side, respectively, yields a strong quasi-static sheath-field on the rear side of the heavy-ion part of the target. This sheath-field increases the energy of the shock-accelerated ions while preserving their mono-energeticity.

  6. Hybrid (Vlasov-Fluid) simulation of ion-acoustic solitons chain formation including trapped electrons

    SciTech Connect

    Behjat, E.; Aminmansoor, F.; Abbasi, H.

    2015-08-15

    Disintegration of a Gaussian profile into ion-acoustic solitons in the presence of trapped electrons [H. Hakimi Pajouh and H. Abbasi, Phys. Plasmas 15, 082105 (2008)] is revisited. Through a hybrid (Vlasov-Fluid) model, the restrictions associated with the simple modified Korteweg de-Vries (mKdV) model are studied. For instance, the lack of vital information in the phase space associated with the evolution of electron velocity distribution, the perturbative nature of mKdV model which limits it to the weak nonlinear cases, and the special spatio-temporal scaling based on which the mKdV is derived. Remarkable differences between the results of the two models lead us to conclude that the mKdV model can only monitor the general aspects of the dynamics, and the precise picture including the correct spatio-temporal scales and the properties of solitons should be studied within the framework of hybrid model.

  7. Vlasov simulations of plasma-wall interactions in a magnetized and weakly collisional plasma

    SciTech Connect

    Devaux, S.; Manfredi, G.

    2006-08-15

    A Vlasov code is used to model the transition region between an equilibrium plasma and an absorbing wall in the presence of a tilted magnetic field, for the case of a weakly collisional plasma ({lambda}{sub mfp}>>{rho}{sub i}, where {lambda}{sub mfp} is the ion-neutral mean-free path and {rho}{sub i} is the ion Larmor radius). The phase space structure of the plasma-wall transition is analyzed in detail and theoretical estimates of the magnetic presheath width are tested numerically. It is shown that the distribution near the wall is far from Maxwellian, so that temperature measurements should be interpreted with care. Particular attention is devoted to the angular distribution of ions impinging on the wall, which is an important parameter to determine the level of wall erosion and sputtering.

  8. GBL-2D Version 1.0: a 2D geometry boolean library.

    SciTech Connect

    McBride, Cory L. (Elemental Technologies, American Fort, UT); Schmidt, Rodney Cannon; Yarberry, Victor R.; Meyers, Ray J.

    2006-11-01

    This report describes version 1.0 of GBL-2D, a geometric Boolean library for 2D objects. The library is written in C++ and consists of a set of classes and routines. The classes primarily represent geometric data and relationships. Classes are provided for 2D points, lines, arcs, edge uses, loops, surfaces and mask sets. The routines contain algorithms for geometric Boolean operations and utility functions. Routines are provided that incorporate the Boolean operations: Union(OR), XOR, Intersection and Difference. A variety of additional analytical geometry routines and routines for importing and exporting the data in various file formats are also provided. The GBL-2D library was originally developed as a geometric modeling engine for use with a separate software tool, called SummitView [1], that manipulates the 2D mask sets created by designers of Micro-Electro-Mechanical Systems (MEMS). However, many other practical applications for this type of software can be envisioned because the need to perform 2D Boolean operations can arise in many contexts.

  9. Comparison of open-source linear programming solvers.

    SciTech Connect

    Gearhart, Jared Lee; Adair, Kristin Lynn; Durfee, Justin D.; Jones, Katherine A.; Martin, Nathaniel; Detry, Richard Joseph

    2013-10-01

    When developing linear programming models, issues such as budget limitations, customer requirements, or licensing may preclude the use of commercial linear programming solvers. In such cases, one option is to use an open-source linear programming solver. A survey of linear programming tools was conducted to identify potential open-source solvers. From this survey, four open-source solvers were tested using a collection of linear programming test problems and the results were compared to IBM ILOG CPLEX Optimizer (CPLEX) [1], an industry standard. The solvers considered were: COIN-OR Linear Programming (CLP) [2], [3], GNU Linear Programming Kit (GLPK) [4], lp_solve [5] and Modular In-core Nonlinear Optimization System (MINOS) [6]. As no open-source solver outperforms CPLEX, this study demonstrates the power of commercial linear programming software. CLP was found to be the top performing open-source solver considered in terms of capability and speed. GLPK also performed well but cannot match the speed of CLP or CPLEX. lp_solve and MINOS were considerably slower and encountered issues when solving several test problems.

  10. Vlasov simulations of kinetic Alfvén waves at proton kinetic scales

    SciTech Connect

    Vásconez, C. L.; Valentini, F.; Veltri, P.; Camporeale, E.

    2014-11-15

    Kinetic Alfvén waves represent an important subject in space plasma physics, since they are thought to play a crucial role in the development of the turbulent energy cascade in the solar wind plasma at short wavelengths (of the order of the proton gyro radius ρ{sub p} and/or inertial length d{sub p} and beyond). A full understanding of the physical mechanisms which govern the kinetic plasma dynamics at these scales can provide important clues on the problem of the turbulent dissipation and heating in collisionless systems. In this paper, hybrid Vlasov-Maxwell simulations are employed to analyze in detail the features of the kinetic Alfvén waves at proton kinetic scales, in typical conditions of the solar wind environment (proton plasma beta β{sub p} = 1). In particular, linear and nonlinear regimes of propagation of these fluctuations have been investigated in a single-wave situation, focusing on the physical processes of collisionless Landau damping and wave-particle resonant interaction. Interestingly, since for wavelengths close to d{sub p} and β{sub p} ≃ 1 (for which ρ{sub p} ≃ d{sub p}) the kinetic Alfvén waves have small phase speed compared to the proton thermal velocity, wave-particle interaction processes produce significant deformations in the core of the particle velocity distribution, appearing as phase space vortices and resulting in flat-top velocity profiles. Moreover, as the Eulerian hybrid Vlasov-Maxwell algorithm allows for a clean almost noise-free description of the velocity space, three-dimensional plots of the proton velocity distribution help to emphasize how the plasma departs from the Maxwellian configuration of thermodynamic equilibrium due to nonlinear kinetic effects.

  11. Vlasov Theory of the Equilibrium Structure of Tangential Discontinuities in Space Plasmas

    NASA Astrophysics Data System (ADS)

    Roth, M.; de Keyser, J.; Kuznetsova, M. M.

    1996-05-01

    Extensive theoretical work has been performed on the equilibrium structure of tangential discontinuities (TDs) in collisionless plasmas. This paper reviews kinetic models based on steady-state solutions of the Vlasov equation. It is shown that most of the existing models are special cases of a generalized multi-species model. In this generalized model all particle populations -from both outer regions and from inside the layer — are described using a unique formalism for the velocity distribution functions. Because of their historical importance, the Harris and Sestero models are reviewed and deduced from the generalized model. The Lee and Kan model is also a special case of the generalized model. The generalized model, however, is also able to describe TDs with velocity shear and large angles of magnetic field rotation. Such a multi-species model with a large number of free parameters and different gradient scales illustrates many observable features of TDs, including their multiscale fine structure. Particular attention is paid to the magnetopause. Observed magnetopause crossings are simulated. The effects of the relative flow velocity and asymmetrical magnetic field profiles on the structure of the magnetopause and on its stability with respect to tearing perturbations are discussed. We also present calculations that demonstrate the potential of the generalized model in explaining the origin of discrete auroral arcs. Numerical simulations of solar wind TDs with heavy ions and a large spectrum of thicknesses are also feasible. This indicates that such a model is of fundamental importance for understanding the detailed structure of solar wind TDs, like those observed by the interplanetary spacecraft ULYSSES. The problems associated with the one-dimensional, time-independent Vlasov approach are discussed and a variational principle is suggested to reduce the arbitrariness resulting from the large number of free parameters.

  12. Interparticle Attraction in 2D Complex Plasmas

    NASA Astrophysics Data System (ADS)

    Kompaneets, Roman; Morfill, Gregor E.; Ivlev, Alexei V.

    2016-03-01

    Complex (dusty) plasmas allow experimental studies of various physical processes occurring in classical liquids and solids by directly observing individual microparticles. A major problem is that the interaction between microparticles is generally not molecularlike. In this Letter, we propose how to achieve a molecularlike interaction potential in laboratory 2D complex plasmas. We argue that this principal aim can be achieved by using relatively small microparticles and properly adjusting discharge parameters. If experimentally confirmed, this will make it possible to employ complex plasmas as a model system with an interaction potential resembling that of conventional liquids.

  13. Periodically sheared 2D Yukawa systems

    SciTech Connect

    Kovács, Anikó Zsuzsa; Hartmann, Peter; Donkó, Zoltán

    2015-10-15

    We present non-equilibrium molecular dynamics simulation studies on the dynamic (complex) shear viscosity of a 2D Yukawa system. We have identified a non-monotonic frequency dependence of the viscosity at high frequencies and shear rates, an energy absorption maximum (local resonance) at the Einstein frequency of the system at medium shear rates, an enhanced collective wave activity, when the excitation is near the plateau frequency of the longitudinal wave dispersion, and the emergence of significant configurational anisotropy at small frequencies and high shear rates.

  14. ENERGY LANDSCAPE OF 2D FLUID FORMS

    SciTech Connect

    Y. JIANG; ET AL

    2000-04-01

    The equilibrium states of 2D non-coarsening fluid foams, which consist of bubbles with fixed areas, correspond to local minima of the total perimeter. (1) The authors find an approximate value of the global minimum, and determine directly from an image how far a foam is from its ground state. (2) For (small) area disorder, small bubbles tend to sort inwards and large bubbles outwards. (3) Topological charges of the same sign repel while charges of opposite sign attract. (4) They discuss boundary conditions and the uniqueness of the pattern for fixed topology.

  15. 2D stepping drive for hyperspectral systems

    NASA Astrophysics Data System (ADS)

    Endrödy, Csaba; Mehner, Hannes; Grewe, Adrian; Sinzinger, Stefan; Hoffmann, Martin

    2015-07-01

    We present the design, fabrication and characterization of a compact 2D stepping microdrive for pinhole array positioning. The miniaturized solution enables a highly integrated compact hyperspectral imaging system. Based on the geometry of the pinhole array, an inch-worm drive with electrostatic actuators was designed resulting in a compact (1 cm2) positioning system featuring a step size of about 15 µm in a 170 µm displacement range. The high payload (20 mg) as required for the pinhole array and the compact system design exceed the known electrostatic inch-worm-based microdrives.

  16. Quasi-simultaneous interaction method for solving 2D boundary layer flows over plates and airfoils

    NASA Astrophysics Data System (ADS)

    Bijleveld, H. A.; Veldman, A. E. P.

    2012-11-01

    This paper studies unsteady 2D boundary layer flows over dented plates and a NACA 0012 airfoil. An inviscid flow is assumed to exist outside the boundary layer and is solved iteratively with the boundary layer flow together with the interaction method until a matching solution is achieved. Hereto a quasi-simultaneous interaction method is applied, in which the integral boundary layer equations are solved together with an interaction-law equation. The interaction-law equation is an approximation of the external flow and based on thin-airfoil theory. It is an algebraic relation between the velocity and displacement thickness. The interaction-law equation ensures that the eigenvalues of the system of equations do not have a sign change and that no singularities occur. Three numerical schemes are used to solve the boundary layer flow with the interaction method. These are: a standard scheme, a splitting method and a characteristics solver. All schemes use a finite difference discretization. The three schemes yield comparable results for the simulations carried out. The standard scheme is deviating most from the splitting and characteristics solvers. The results show that the eigenvalues remain positive, even in separation. As expected, the addition of the interaction-law equation prevents a sign change of the eigenvalues. The quasi-simultaneous interaction scheme is applicable to the three numerical schemes tested.

  17. Multi-GPU kinetic solvers using MPI and CUDA

    NASA Astrophysics Data System (ADS)

    Zabelok, Sergey; Arslanbekov, Robert; Kolobov, Vladimir

    2014-12-01

    This paper describes recent progress towards porting a Unified Flow Solver (UFS) to heterogeneous parallel computing. The main challenge of porting UFS to graphics processing units (GPUs) comes from the dynamically adapted mesh, which causes irregular data access. We describe the implementation of CUDA kernels for three modules in UFS: the direct Boltzmann solver using discrete velocity method (DVM), the DSMC module, and the Lattice Boltzmann Method (LBM) solver, all using octree Cartesian mesh with adaptive Mesh Refinement (AMR). Double digit speedup on single GPU and good scaling for multi-GPU has been demonstrated.

  18. A non-conforming 3D spherical harmonic transport solver

    SciTech Connect

    Van Criekingen, S.

    2006-07-01

    A new 3D transport solver for the time-independent Boltzmann transport equation has been developed. This solver is based on the second-order even-parity form of the transport equation. The angular discretization is performed through the expansion of the angular neutron flux in spherical harmonics (PN method). The novelty of this solver is the use of non-conforming finite elements for the spatial discretization. Such elements lead to a discontinuous flux approximation. This interface continuity requirement relaxation property is shared with mixed-dual formulations such as the ones based on Raviart-Thomas finite elements. Encouraging numerical results are presented. (authors)

  19. Albany/FELIX: A parallel, scalable and robust, finite element, first-order Stokes approximation ice sheet solver built for advanced analysis

    DOE PAGESBeta

    Tezaur, I. K.; Perego, M.; Salinger, A. G.; Tuminaro, R. S.; Price, S. F.

    2015-04-27

    This paper describes a new parallel, scalable and robust finite element based solver for the first-order Stokes momentum balance equations for ice flow. The solver, known as Albany/FELIX, is constructed using the component-based approach to building application codes, in which mature, modular libraries developed as a part of the Trilinos project are combined using abstract interfaces and template-based generic programming, resulting in a final code with access to dozens of algorithmic and advanced analysis capabilities. Following an overview of the relevant partial differential equations and boundary conditions, the numerical methods chosen to discretize the ice flow equations are described, alongmore » with their implementation. The results of several verification studies of the model accuracy are presented using (1) new test cases for simplified two-dimensional (2-D) versions of the governing equations derived using the method of manufactured solutions, and (2) canonical ice sheet modeling benchmarks. Model accuracy and convergence with respect to mesh resolution are then studied on problems involving a realistic Greenland ice sheet geometry discretized using hexahedral and tetrahedral meshes. Also explored as a part of this study is the effect of vertical mesh resolution on the solution accuracy and solver performance. The robustness and scalability of our solver on these problems is demonstrated. Lastly, we show that good scalability can be achieved by preconditioning the iterative linear solver using a new algebraic multilevel preconditioner, constructed based on the idea of semi-coarsening.« less

  20. Albany/FELIX: A parallel, scalable and robust, finite element, first-order Stokes approximation ice sheet solver built for advanced analysis

    SciTech Connect

    Tezaur, I. K.; Perego, M.; Salinger, A. G.; Tuminaro, R. S.; Price, S. F.

    2015-04-27

    This paper describes a new parallel, scalable and robust finite element based solver for the first-order Stokes momentum balance equations for ice flow. The solver, known as Albany/FELIX, is constructed using the component-based approach to building application codes, in which mature, modular libraries developed as a part of the Trilinos project are combined using abstract interfaces and template-based generic programming, resulting in a final code with access to dozens of algorithmic and advanced analysis capabilities. Following an overview of the relevant partial differential equations and boundary conditions, the numerical methods chosen to discretize the ice flow equations are described, along with their implementation. The results of several verification studies of the model accuracy are presented using (1) new test cases for simplified two-dimensional (2-D) versions of the governing equations derived using the method of manufactured solutions, and (2) canonical ice sheet modeling benchmarks. Model accuracy and convergence with respect to mesh resolution are then studied on problems involving a realistic Greenland ice sheet geometry discretized using hexahedral and tetrahedral meshes. Also explored as a part of this study is the effect of vertical mesh resolution on the solution accuracy and solver performance. The robustness and scalability of our solver on these problems is demonstrated. Lastly, we show that good scalability can be achieved by preconditioning the iterative linear solver using a new algebraic multilevel preconditioner, constructed based on the idea of semi-coarsening.

  1. Albany/FELIX: a parallel, scalable and robust, finite element, first-order Stokes approximation ice sheet solver built for advanced analysis

    NASA Astrophysics Data System (ADS)

    Tezaur, I. K.; Perego, M.; Salinger, A. G.; Tuminaro, R. S.; Price, S. F.

    2015-04-01

    This paper describes a new parallel, scalable and robust finite element based solver for the first-order Stokes momentum balance equations for ice flow. The solver, known as Albany/FELIX, is constructed using the component-based approach to building application codes, in which mature, modular libraries developed as a part of the Trilinos project are combined using abstract interfaces and template-based generic programming, resulting in a final code with access to dozens of algorithmic and advanced analysis capabilities. Following an overview of the relevant partial differential equations and boundary conditions, the numerical methods chosen to discretize the ice flow equations are described, along with their implementation. The results of several verification studies of the model accuracy are presented using (1) new test cases for simplified two-dimensional (2-D) versions of the governing equations derived using the method of manufactured solutions, and (2) canonical ice sheet modeling benchmarks. Model accuracy and convergence with respect to mesh resolution are then studied on problems involving a realistic Greenland ice sheet geometry discretized using hexahedral and tetrahedral meshes. Also explored as a part of this study is the effect of vertical mesh resolution on the solution accuracy and solver performance. The robustness and scalability of our solver on these problems is demonstrated. Lastly, we show that good scalability can be achieved by preconditioning the iterative linear solver using a new algebraic multilevel preconditioner, constructed based on the idea of semi-coarsening.

  2. Toward an Efficient Icing CFD Process Using an Interactive Software Toolkit: Smagglce 2D

    NASA Technical Reports Server (NTRS)

    Vickerman, Mary B.; Choo, Yung K.; Schilling, Herbert W.; Baez, Marivell; Braun, Donald C.; Cotton, Barbara J.

    2001-01-01

    Two-dimensional CID analysis for iced airfoils can be a labor-intensive task. The software toolkit SmaggIce 2D is being developed to help streamline the CID process and provide the unique features needed for icing. When complete, it will include a combination of partially automated and fully interactive tools for all aspects of the tasks leading up to the flow analysis: geometry preparation, domain decomposition. block boundary demoralization. gridding, and linking with a flow solver. It also includes tools to perform ice shape characterization, an important aid in determining the relationship between ice characteristics and their effects on aerodynamic performance. Completed tools, work-in-progress, and planned features of the software toolkit are presented here.

  3. Multiple Frequency Contrast Source Inversion Method for Vertical Electromagnetic Profiling: 2D Simulation Results and Analyses

    NASA Astrophysics Data System (ADS)

    Li, Jinghe; Song, Linping; Liu, Qing Huo

    2016-02-01

    A simultaneous multiple frequency contrast source inversion (CSI) method is applied to reconstructing hydrocarbon reservoir targets in a complex multilayered medium in two dimensions. It simulates the effects of a salt dome sedimentary formation in the context of reservoir monitoring. In this method, the stabilized biconjugate-gradient fast Fourier transform (BCGS-FFT) algorithm is applied as a fast solver for the 2D volume integral equation for the forward computation. The inversion technique with CSI combines the efficient FFT algorithm to speed up the matrix-vector multiplication and the stable convergence of the simultaneous multiple frequency CSI in the iteration process. As a result, this method is capable of making quantitative conductivity image reconstruction effectively for large-scale electromagnetic oil exploration problems, including the vertical electromagnetic profiling (VEP) survey investigated here. A number of numerical examples have been demonstrated to validate the effectiveness and capacity of the simultaneous multiple frequency CSI method for a limited array view in VEP.

  4. A fast and accurate method to predict 2D and 3D aerodynamic boundary layer flows

    NASA Astrophysics Data System (ADS)

    Bijleveld, H. A.; Veldman, A. E. P.

    2014-12-01

    A quasi-simultaneous interaction method is applied to predict 2D and 3D aerodynamic flows. This method is suitable for offshore wind turbine design software as it is a very accurate and computationally reasonably cheap method. This study shows the results for a NACA 0012 airfoil. The two applied solvers converge to the experimental values when the grid is refined. We also show that in separation the eigenvalues remain positive thus avoiding the Goldstein singularity at separation. In 3D we show a flow over a dent in which separation occurs. A rotating flat plat is used to show the applicability of the method for rotating flows. The shown capabilities of the method indicate that the quasi-simultaneous interaction method is suitable for design methods for offshore wind turbine blades.

  5. An investigation of DTNS2D for use as an incompressible turbulence modelling test-bed

    NASA Technical Reports Server (NTRS)

    Steffen, Christopher J., Jr.

    1992-01-01

    This paper documents an investigation of a two dimensional, incompressible Navier-Stokes solver for use as a test-bed for turbulence modelling. DTNS2D is the code under consideration for use at the Center for Modelling of Turbulence and Transition (CMOTT). This code was created by Gorski at the David Taylor Research Center and incorporates the pseudo compressibility method. Two laminar benchmark flows are used to measure the performance and implementation of the method. The classical solution of the Blasius boundary layer is used for validating the flat plate flow, while experimental data is incorporated in the validation of backward facing step flow. Velocity profiles, convergence histories, and reattachment lengths are used to quantify these calculations. The organization and adaptability of the code are also examined in light of the role as a numerical test-bed.

  6. WFR-2D: an analytical model for PWAS-generated 2D ultrasonic guided wave propagation

    NASA Astrophysics Data System (ADS)

    Shen, Yanfeng; Giurgiutiu, Victor

    2014-03-01

    This paper presents WaveFormRevealer 2-D (WFR-2D), an analytical predictive tool for the simulation of 2-D ultrasonic guided wave propagation and interaction with damage. The design of structural health monitoring (SHM) systems and self-aware smart structures requires the exploration of a wide range of parameters to achieve best detection and quantification of certain types of damage. Such need for parameter exploration on sensor dimension, location, guided wave characteristics (mode type, frequency, wavelength, etc.) can be best satisfied with analytical models which are fast and efficient. The analytical model was constructed based on the exact 2-D Lamb wave solution using Bessel and Hankel functions. Damage effects were inserted in the model by considering the damage as a secondary wave source with complex-valued directivity scattering coefficients containing both amplitude and phase information from wave-damage interaction. The analytical procedure was coded with MATLAB, and a predictive simulation tool called WaveFormRevealer 2-D was developed. The wave-damage interaction coefficients (WDICs) were extracted from harmonic analysis of local finite element model (FEM) with artificial non-reflective boundaries (NRB). The WFR-2D analytical simulation results were compared and verified with full scale multiphysics finite element models and experiments with scanning laser vibrometer. First, Lamb wave propagation in a pristine aluminum plate was simulated with WFR-2D, compared with finite element results, and verified by experiments. Then, an inhomogeneity was machined into the plate to represent damage. Analytical modeling was carried out, and verified by finite element simulation and experiments. This paper finishes with conclusions and suggestions for future work.

  7. Microwave Assisted 2D Materials Exfoliation

    NASA Astrophysics Data System (ADS)

    Wang, Yanbin

    Two-dimensional materials have emerged as extremely important materials with applications ranging from energy and environmental science to electronics and biology. Here we report our discovery of a universal, ultrafast, green, solvo-thermal technology for producing excellent-quality, few-layered nanosheets in liquid phase from well-known 2D materials such as such hexagonal boron nitride (h-BN), graphite, and MoS2. We start by mixing the uniform bulk-layered material with a common organic solvent that matches its surface energy to reduce the van der Waals attractive interactions between the layers; next, the solutions are heated in a commercial microwave oven to overcome the energy barrier between bulk and few-layers states. We discovered the minutes-long rapid exfoliation process is highly temperature dependent, which requires precise thermal management to obtain high-quality inks. We hypothesize a possible mechanism of this proposed solvo-thermal process; our theory confirms the basis of this novel technique for exfoliation of high-quality, layered 2D materials by using an as yet unknown role of the solvent.

  8. Photocurrent spectroscopy of 2D materials

    NASA Astrophysics Data System (ADS)

    Cobden, David

    Confocal photocurrent measurements provide a powerful means of studying many aspects of the optoelectronic and electrical properties of a 2D device or material. At a diffraction-limited point they can provide a detailed absorption spectrum, and they can probe local symmetry, ultrafast relaxation rates and processes, electron-electron interaction strengths, and transport coefficients. We illustrate this with several examples, once being the photo-Nernst effect. In gapless 2D materials, such as graphene, in a perpendicular magnetic field a photocurrent antisymmetric in the field is generated near to the free edges, with opposite sign at opposite edges. Its origin is the transverse thermoelectric current associated with the laser-induced electron temperature gradient. This effect provides an unambiguous demonstration of the Shockley-Ramo nature of long-range photocurrent generation in gapless materials. It also provides a means of investigating quasiparticle properties. For example, in the case of graphene on hBN, it can be used to probe the Lifshitz transition that occurs due to the minibands formed by the Moire superlattice. We also observe and discuss photocurrent generated in other semimetallic (WTe2) and semiconducting (WSe2) monolayers. Work supported by DoE BES and NSF EFRI grants.

  9. Multienzyme Inkjet Printed 2D Arrays.

    PubMed

    Gdor, Efrat; Shemesh, Shay; Magdassi, Shlomo; Mandler, Daniel

    2015-08-19

    The use of printing to produce 2D arrays is well established, and should be relatively facile to adapt for the purpose of printing biomaterials; however, very few studies have been published using enzyme solutions as inks. Among the printing technologies, inkjet printing is highly suitable for printing biomaterials and specifically enzymes, as it offers many advantages. Formulation of the inkjet inks is relatively simple and can be adjusted to a variety of biomaterials, while providing nonharmful environment to the enzymes. Here we demonstrate the applicability of inkjet printing for patterning multiple enzymes in a predefined array in a very straightforward, noncontact method. Specifically, various arrays of the enzymes glucose oxidase (GOx), invertase (INV) and horseradish peroxidase (HP) were printed on aminated glass surfaces, followed by immobilization using glutardialdehyde after printing. Scanning electrochemical microscopy (SECM) was used for imaging the printed patterns and to ascertain the enzyme activity. The successful formation of 2D arrays consisting of enzymes was explored as a means of developing the first surface confined enzyme based logic gates. Principally, XOR and AND gates, each consisting of two enzymes as the Boolean operators, were assembled, and their operation was studied by SECM. PMID:26214072

  10. SPARTA - Solver for Polarized Atmospheric Radiative Transfer Applications: Introduction and application to Saharan dust fields

    NASA Astrophysics Data System (ADS)

    Barlakas, Vasileios; Macke, Andreas; Wendisch, Manfred

    2016-07-01

    Non-spherical particles in the atmosphere absorb and scatter solar radiation. They change the polarization state of solar radiation depending on their shape, size, chemical composition and orientation. To quantify polarization effects, a new three-dimensional (3D) vector radiative transfer model, SPARTA (Solver for Polarized Atmospheric Radiative Transfer Applications) is introduced and validated against benchmark results. SPARTA employs the statistical forward Monte Carlo technique for efficient column-response pixel-based radiance calculations including polarization for 3D inhomogeneous cloudless and cloudy atmospheres. A sensitivity study has been carried out and exemplarily results are presented for two lidar-based mineral dust fields. The scattering and absorption properties of the dust particles have been computed for spheroids and irregular shaped particles. Polarized radiance fields in two-dimensional (2D) and one-dimensional (1D) inhomogeneous Saharan dust fields have been calculated at 532 nm wavelength. The domain-averaged results of the normalized reflected radiance are almost identical for the 1D and 2D modes. In the areas with large spatial gradient in optical thickness with expected significant horizontal photon transport, the radiance fields of the 2D mode differ by about ±12% for the first Stokes component (radiance, I) and ±8% for the second Stokes component (linear polarization, Q) from the fields of the 1D mode.

  11. Elliptic Solvers for Adaptive Mesh Refinement Grids

    SciTech Connect

    Quinlan, D.J.; Dendy, J.E., Jr.; Shapira, Y.

    1999-06-03

    We are developing multigrid methods that will efficiently solve elliptic problems with anisotropic and discontinuous coefficients on adaptive grids. The final product will be a library that provides for the simplified solution of such problems. This library will directly benefit the efforts of other Laboratory groups. The focus of this work is research on serial and parallel elliptic algorithms and the inclusion of our black-box multigrid techniques into this new setting. The approach applies the Los Alamos object-oriented class libraries that greatly simplify the development of serial and parallel adaptive mesh refinement applications. In the final year of this LDRD, we focused on putting the software together; in particular we completed the final AMR++ library, we wrote tutorials and manuals, and we built example applications. We implemented the Fast Adaptive Composite Grid method as the principal elliptic solver. We presented results at the Overset Grid Conference and other more AMR specific conferences. We worked on optimization of serial and parallel performance and published several papers on the details of this work. Performance remains an important issue and is the subject of continuing research work.

  12. Advanced Multigrid Solvers for Fluid Dynamics

    NASA Technical Reports Server (NTRS)

    Brandt, Achi

    1999-01-01

    The main objective of this project has been to support the development of multigrid techniques in computational fluid dynamics that can achieve "textbook multigrid efficiency" (TME), which is several orders of magnitude faster than current industrial CFD solvers. Toward that goal we have assembled a detailed table which lists every foreseen kind of computational difficulty for achieving it, together with the possible ways for resolving the difficulty, their current state of development, and references. We have developed several codes to test and demonstrate, in the framework of simple model problems, several approaches for overcoming the most important of the listed difficulties that had not been resolved before. In particular, TME has been demonstrated for incompressible flows on one hand, and for near-sonic flows on the other hand. General approaches were advanced for the relaxation of stagnation points and boundary conditions under various situations. Also, new algebraic multigrid techniques were formed for treating unstructured grid formulations. More details on all these are given below.

  13. LSPRAY: Lagrangian Spray Solver for Applications With Parallel Computing and Unstructured Gas-Phase Flow Solvers

    NASA Technical Reports Server (NTRS)

    Raju, Manthena S.

    1998-01-01

    Sprays occur in a wide variety of industrial and power applications and in the processing of materials. A liquid spray is a phase flow with a gas as the continuous phase and a liquid as the dispersed phase (in the form of droplets or ligaments). Interactions between the two phases, which are coupled through exchanges of mass, momentum, and energy, can occur in different ways at different times and locations involving various thermal, mass, and fluid dynamic factors. An understanding of the flow, combustion, and thermal properties of a rapidly vaporizing spray requires careful modeling of the rate-controlling processes associated with the spray's turbulent transport, mixing, chemical kinetics, evaporation, and spreading rates, as well as other phenomena. In an attempt to advance the state-of-the-art in multidimensional numerical methods, we at the NASA Lewis Research Center extended our previous work on sprays to unstructured grids and parallel computing. LSPRAY, which was developed by M.S. Raju of Nyma, Inc., is designed to be massively parallel and could easily be coupled with any existing gas-phase flow and/or Monte Carlo probability density function (PDF) solver. The LSPRAY solver accommodates the use of an unstructured mesh with mixed triangular, quadrilateral, and/or tetrahedral elements in the gas-phase solvers. It is used specifically for fuel sprays within gas turbine combustors, but it has many other uses. The spray model used in LSPRAY provided favorable results when applied to stratified-charge rotary combustion (Wankel) engines and several other confined and unconfined spray flames. The source code will be available with the National Combustion Code (NCC) as a complete package.

  14. 2-D or not 2-D, that is the question: A Northern California test

    SciTech Connect

    Mayeda, K; Malagnini, L; Phillips, W S; Walter, W R; Dreger, D

    2005-06-06

    Reliable estimates of the seismic source spectrum are necessary for accurate magnitude, yield, and energy estimation. In particular, how seismic radiated energy scales with increasing earthquake size has been the focus of recent debate within the community and has direct implications on earthquake source physics studies as well as hazard mitigation. The 1-D coda methodology of Mayeda et al. has provided the lowest variance estimate of the source spectrum when compared against traditional approaches that use direct S-waves, thus making it ideal for networks that have sparse station distribution. The 1-D coda methodology has been mostly confined to regions of approximately uniform complexity. For larger, more geophysically complicated regions, 2-D path corrections may be required. The complicated tectonics of the northern California region coupled with high quality broadband seismic data provides for an ideal ''apples-to-apples'' test of 1-D and 2-D path assumptions on direct waves and their coda. Using the same station and event distribution, we compared 1-D and 2-D path corrections and observed the following results: (1) 1-D coda results reduced the amplitude variance relative to direct S-waves by roughly a factor of 8 (800%); (2) Applying a 2-D correction to the coda resulted in up to 40% variance reduction from the 1-D coda results; (3) 2-D direct S-wave results, though better than 1-D direct waves, were significantly worse than the 1-D coda. We found that coda-based moment-rate source spectra derived from the 2-D approach were essentially identical to those from the 1-D approach for frequencies less than {approx}0.7-Hz, however for the high frequencies (0.7{le} f {le} 8.0-Hz), the 2-D approach resulted in inter-station scatter that was generally 10-30% smaller. For complex regions where data are plentiful, a 2-D approach can significantly improve upon the simple 1-D assumption. In regions where only 1-D coda correction is available it is still preferable over 2

  15. Handling Vacuum Regions in a Hybrid Plasma Solver

    NASA Astrophysics Data System (ADS)

    Holmström, M.

    2013-04-01

    In a hybrid plasma solver (particle ions, fluid mass-less electrons) regions of vacuum, or very low charge density, can cause problems since the evaluation of the electric field involves division by charge density. This causes large electric fields in low density regions that can lead to numerical instabilities. Here we propose a self consistent handling of vacuum regions for hybrid solvers. Vacuum regions can be considered having infinite resistivity, and in this limit Faraday's law approaches a magnetic diffusion equation. We describe an algorithm that solves such a diffusion equation in regions with charge density below a threshold value. We also present an implementation of this algorithm in a hybrid plasma solver, and an application to the interaction between the Moon and the solar wind. We also discuss the implementation of hyperresistivity for smoothing the electric field in a PIC solver.

  16. Parallel iterative solvers and preconditioners using approximate hierarchical methods

    SciTech Connect

    Grama, A.; Kumar, V.; Sameh, A.

    1996-12-31

    In this paper, we report results of the performance, convergence, and accuracy of a parallel GMRES solver for Boundary Element Methods. The solver uses a hierarchical approximate matrix-vector product based on a hybrid Barnes-Hut / Fast Multipole Method. We study the impact of various accuracy parameters on the convergence and show that with minimal loss in accuracy, our solver yields significant speedups. We demonstrate the excellent parallel efficiency and scalability of our solver. The combined speedups from approximation and parallelism represent an improvement of several orders in solution time. We also develop fast and paralellizable preconditioners for this problem. We report on the performance of an inner-outer scheme and a preconditioner based on truncated Green`s function. Experimental results on a 256 processor Cray T3D are presented.

  17. An evaluation of parallel multigrid as a solver and a preconditioner for singular perturbed problems

    SciTech Connect

    Oosterlee, C.W.; Washio, T.

    1996-12-31

    In this paper we try to achieve h-independent convergence with preconditioned GMRES and BiCGSTAB for 2D singular perturbed equations. Three recently developed multigrid methods are adopted as a preconditioner. They are also used as solution methods in order to compare the performance of the methods as solvers and as preconditioners. Two of the multigrid methods differ only in the transfer operators. One uses standard matrix- dependent prolongation operators from. The second uses {open_quotes}upwind{close_quotes} prolongation operators, developed. Both employ the Galerkin coarse grid approximation and an alternating zebra line Gauss-Seidel smoother. The third method is based on the block LU decomposition of a matrix and on an approximate Schur complement. This multigrid variant is presented in. All three multigrid algorithms are algebraic methods.

  18. Numerical Evaluation of 2D Ground States

    NASA Astrophysics Data System (ADS)

    Kolkovska, Natalia

    2016-02-01

    A ground state is defined as the positive radial solution of the multidimensional nonlinear problem \\varepsilon propto k_ bot 1 - ξ with the function f being either f(u) =a|u|p-1u or f(u) =a|u|pu+b|u|2pu. The numerical evaluation of ground states is based on the shooting method applied to an equivalent dynamical system. A combination of fourth order Runge-Kutta method and Hermite extrapolation formula is applied to solving the resulting initial value problem. The efficiency of this procedure is demonstrated in the 1D case, where the maximal difference between the exact and numerical solution is ≈ 10-11 for a discretization step 0:00025. As a major application, we evaluate numerically the critical energy constant. This constant is defined as a functional of the ground state and is used in the study of the 2D Boussinesq equations.

  19. Canard configured aircraft with 2-D nozzle

    NASA Technical Reports Server (NTRS)

    Child, R. D.; Henderson, W. P.

    1978-01-01

    A closely-coupled canard fighter with vectorable two-dimensional nozzle was designed for enhanced transonic maneuvering. The HiMAT maneuver goal of a sustained 8g turn at a free-stream Mach number of 0.9 and 30,000 feet was the primary design consideration. The aerodynamic design process was initiated with a linear theory optimization minimizing the zero percent suction drag including jet effects and refined with three-dimensional nonlinear potential flow techniques. Allowances were made for mutual interference and viscous effects. The design process to arrive at the resultant configuration is described, and the design of a powered 2-D nozzle model to be tested in the LRC 16-foot Propulsion Wind Tunnel is shown.

  20. 2D Electrostatic Actuation of Microshutter Arrays

    NASA Technical Reports Server (NTRS)

    Burns, Devin E.; Oh, Lance H.; Li, Mary J.; Jones, Justin S.; Kelly, Daniel P.; Zheng, Yun; Kutyrev, Alexander S.; Moseley, Samuel H.

    2015-01-01

    An electrostatically actuated microshutter array consisting of rotational microshutters (shutters that rotate about a torsion bar) were designed and fabricated through the use of models and experiments. Design iterations focused on minimizing the torsional stiffness of the microshutters, while maintaining their structural integrity. Mechanical and electromechanical test systems were constructed to measure the static and dynamic behavior of the microshutters. The torsional stiffness was reduced by a factor of four over initial designs without sacrificing durability. Analysis of the resonant behavior of the microshutter arrays demonstrates that the first resonant mode is a torsional mode occurring around 3000 Hz. At low vacuum pressures, this resonant mode can be used to significantly reduce the drive voltage necessary for actuation requiring as little as 25V. 2D electrostatic latching and addressing was demonstrated using both a resonant and pulsed addressing scheme.

  1. 2D Electrostatic Actuation of Microshutter Arrays

    NASA Technical Reports Server (NTRS)

    Burns, Devin E.; Oh, Lance H.; Li, Mary J.; Kelly, Daniel P.; Kutyrev, Alexander S.; Moseley, Samuel H.

    2015-01-01

    Electrostatically actuated microshutter arrays consisting of rotational microshutters (shutters that rotate about a torsion bar) were designed and fabricated through the use of models and experiments. Design iterations focused on minimizing the torsional stiffness of the microshutters, while maintaining their structural integrity. Mechanical and electromechanical test systems were constructed to measure the static and dynamic behavior of the microshutters. The torsional stiffness was reduced by a factor of four over initial designs without sacrificing durability. Analysis of the resonant behavior of the microshutters demonstrates that the first resonant mode is a torsional mode occurring around 3000 Hz. At low vacuum pressures, this resonant mode can be used to significantly reduce the drive voltage necessary for actuation requiring as little as 25V. 2D electrostatic latching and addressing was demonstrated using both a resonant and pulsed addressing scheme.

  2. Graphene suspensions for 2D printing

    NASA Astrophysics Data System (ADS)

    Soots, R. A.; Yakimchuk, E. A.; Nebogatikova, N. A.; Kotin, I. A.; Antonova, I. V.

    2016-04-01

    It is shown that, by processing a graphite suspension in ethanol or water by ultrasound and centrifuging, it is possible to obtain particles with thicknesses within 1-6 nm and, in the most interesting cases, 1-1.5 nm. Analogous treatment of a graphite suspension in organic solvent yields eventually thicker particles (up to 6-10 nm thick) even upon long-term treatment. Using the proposed ink based on graphene and aqueous ethanol with ethylcellulose and terpineol additives for 2D printing, thin (~5 nm thick) films with sheet resistance upon annealing ~30 MΩ/□ were obtained. With the ink based on aqueous graphene suspension, the sheet resistance was ~5-12 kΩ/□ for 6- to 15-nm-thick layers with a carrier mobility of ~30-50 cm2/(V s).

  3. Metrology for graphene and 2D materials

    NASA Astrophysics Data System (ADS)

    Pollard, Andrew J.

    2016-09-01

    The application of graphene, a one atom-thick honeycomb lattice of carbon atoms with superlative properties, such as electrical conductivity, thermal conductivity and strength, has already shown that it can be used to benefit metrology itself as a new quantum standard for resistance. However, there are many application areas where graphene and other 2D materials, such as molybdenum disulphide (MoS2) and hexagonal boron nitride (h-BN), may be disruptive, areas such as flexible electronics, nanocomposites, sensing and energy storage. Applying metrology to the area of graphene is now critical to enable the new, emerging global graphene commercial world and bridge the gap between academia and industry. Measurement capabilities and expertise in a wide range of scientific areas are required to address this challenge. The combined and complementary approach of varied characterisation methods for structural, chemical, electrical and other properties, will allow the real-world issues of commercialising graphene and other 2D materials to be addressed. Here, examples of metrology challenges that have been overcome through a multi-technique or new approach are discussed. Firstly, the structural characterisation of defects in both graphene and MoS2 via Raman spectroscopy is described, and how nanoscale mapping of vacancy defects in graphene is also possible using tip-enhanced Raman spectroscopy (TERS). Furthermore, the chemical characterisation and removal of polymer residue on chemical vapour deposition (CVD) grown graphene via secondary ion mass spectrometry (SIMS) is detailed, as well as the chemical characterisation of iron films used to grow large domain single-layer h-BN through CVD growth, revealing how contamination of the substrate itself plays a role in the resulting h-BN layer. In addition, the role of international standardisation in this area is described, outlining the current work ongoing in both the International Organization of Standardization (ISO) and the

  4. PDE-based geophysical modelling using finite elements: examples from 3D resistivity and 2D magnetotellurics

    NASA Astrophysics Data System (ADS)

    Schaa, R.; Gross, L.; du Plessis, J.

    2016-04-01

    We present a general finite-element solver, escript, tailored to solve geophysical forward and inverse modeling problems in terms of partial differential equations (PDEs) with suitable boundary conditions. Escript’s abstract interface allows geoscientists to focus on solving the actual problem without being experts in numerical modeling. General-purpose finite element solvers have found wide use especially in engineering fields and find increasing application in the geophysical disciplines as these offer a single interface to tackle different geophysical problems. These solvers are useful for data interpretation and for research, but can also be a useful tool in educational settings. This paper serves as an introduction into PDE-based modeling with escript where we demonstrate in detail how escript is used to solve two different forward modeling problems from applied geophysics (3D DC resistivity and 2D magnetotellurics). Based on these two different cases, other geophysical modeling work can easily be realized. The escript package is implemented as a Python library and allows the solution of coupled, linear or non-linear, time-dependent PDEs. Parallel execution for both shared and distributed memory architectures is supported and can be used without modifications to the scripts.

  5. The mouse ruby-eye 2(d) (ru2(d) /Hps5(ru2-d) ) allele inhibits eumelanin but not pheomelanin synthesis.

    PubMed

    Hirobe, Tomohisa; Ito, Shosuke; Wakamatsu, Kazumasa

    2013-09-01

    The novel mutation named ru2(d) /Hps5(ru2-d) , characterized by light-colored coats and ruby-eyes, prohibits differentiation of melanocytes by inhibiting tyrosinase (Tyr) activity, expression of Tyr, Tyr-related protein 1 (Tyrp1), Tyrp2, and Kit. However, it is not known whether the ru2(d) allele affects pheomelanin synthesis in recessive yellow (e/Mc1r(e) ) or in pheomelanic stage in agouti (A) mice. In this study, effects of the ru2(d) allele on pheomelanin synthesis were investigated by chemical analysis of melanin present in dorsal hairs of 5-week-old mice from F2 generation between C57BL/10JHir (B10)-co-isogenic ruby-eye 2(d) and B10-congenic recessive yellow or agouti. Eumelanin content was decreased in ruby-eye 2(d) and ruby-eye 2(d) agouti mice, whereas pheomelanin content in ruby-eye 2(d) recessive yellow and ruby-eye 2(d) agouti mice did not differ from the corresponding Ru2(d) /- mice, suggesting that the ru2(d) allele inhibits eumelanin but not pheomelanin synthesis. PMID:23672590

  6. Future non-linear stability for solutions of the Einstein-Vlasov system of Bianchi types II and VI0

    NASA Astrophysics Data System (ADS)

    Nungesser, Ernesto

    2012-10-01

    In a recent paper [E. Nungesser, "Future non-linear stability for reflection symmetric solutions of the Einstein-Vlasov system of Bianchi types II and VI0," Annales Henri Poincare (2012), 10.1007/s00023-012-0201-0], we have treated the future nonlinear stability for reflection symmetric solutions of the Einstein-Vlasov system of Bianchi types II and VI0. We have been able now to remove the reflection symmetry assumption, thus treating the non-diagonal case. Apart from the increasing complexity, the methods have been essentially the same as in the diagonal case, showing that they are thus quite powerful. Here, the challenge was to put the equations in a form that permits the use of the previous results. We are able to conclude that after a possible basis change, the future of the non-diagonal spacetimes in consideration is asymptotically diagonal.

  7. Two-Dimensional Current Carrying Bernstein-Greene-Kruskal (BGK) Modes for the Vlasov-Poisson-Ampere System

    NASA Astrophysics Data System (ADS)

    Ng, C. S.

    2014-10-01

    Electrostatic structures have been observed in many regions of space plasmas, including the solar wind, the magnetosphere, the auroral acceleration region. One possible theoretical description of some of these structures is the concept of Bernstein-Greene-Kruskal (BGK) modes, which are exact nonlinear steady-state solutions of the Vlasov-Poisson system of equations in collisionless kinetic theory. We generalize exact solutions of two-dimensional BGK modes in a magnetized plasma with finite magnetic field strength to cases with azimuthal magnetic fields so that these structures carry electric current as well as steady electric and magnetic fields. Such nonlinear solutions now satisfy exactly the Vlasov-Poisson-Ampere system of equations. This work is supported by a National Science Foundation Grant PHY-1004357.

  8. An advanced implicit solver for MHD

    NASA Astrophysics Data System (ADS)

    Udrea, Bogdan

    A new implicit algorithm has been developed for the solution of the time-dependent, viscous and resistive single fluid magnetohydrodynamic (MHD) equations. The algorithm is based on an approximate Riemann solver for the hyperbolic fluxes and central differencing applied on a staggered grid for the parabolic fluxes. The algorithm employs a locally aligned coordinate system that allows the solution to the Riemann problems to be solved in a natural direction, normal to cell interfaces. The result is an original scheme that is robust and reduces the complexity of the flux formulas. The evaluation of the parabolic fluxes is also implemented using a locally aligned coordinate system, this time on the staggered grid. The implicit formulation employed by WARP3 is a two level scheme that was applied for the first time to the single fluid MHD model. The flux Jacobians that appear in the implicit scheme are evaluated numerically. The linear system that results from the implicit discretization is solved using a robust symmetric Gauss-Seidel method. The code has an explicit mode capability so that implementation and test of new algorithms or new physics can be performed in this simpler mode. Last but not least the code was designed and written to run on parallel computers so that complex, high resolution runs can be per formed in hours rather than days. The code has been benchmarked against analytical and experimental gas dynamics and MHD results. The benchmarks consisted of one-dimensional Riemann problems and diffusion dominated problems, two-dimensional supersonic flow over a wedge, axisymmetric magnetoplasmadynamic (MPD) thruster simulation and three-dimensional supersonic flow over intersecting wedges and spheromak stability simulation. The code has been proven to be robust and the results of the simulations showed excellent agreement with analytical and experimental results. Parallel performance studies showed that the code performs as expected when run on parallel

  9. A Comparative Study of Randomized Constraint Solvers for Random-Symbolic Testing

    NASA Technical Reports Server (NTRS)

    Takaki, Mitsuo; Cavalcanti, Diego; Gheyi, Rohit; Iyoda, Juliano; dAmorim, Marcelo; Prudencio, Ricardo

    2009-01-01

    The complexity of constraints is a major obstacle for constraint-based software verification. Automatic constraint solvers are fundamentally incomplete: input constraints often build on some undecidable theory or some theory the solver does not support. This paper proposes and evaluates several randomized solvers to address this issue. We compare the effectiveness of a symbolic solver (CVC3), a random solver, three hybrid solvers (i.e., mix of random and symbolic), and two heuristic search solvers. We evaluate the solvers on two benchmarks: one consisting of manually generated constraints and another generated with a concolic execution of 8 subjects. In addition to fully decidable constraints, the benchmarks include constraints with non-linear integer arithmetic, integer modulo and division, bitwise arithmetic, and floating-point arithmetic. As expected symbolic solving (in particular, CVC3) subsumes the other solvers for the concolic execution of subjects that only generate decidable constraints. For the remaining subjects the solvers are complementary.

  10. The resolved layer of a collisionless, high beta, supercritical, quasi-perpendicular shock wave. III - Vlasov electrodynamics

    NASA Technical Reports Server (NTRS)

    Scudder, J. D.; Mangeney, A.; Lacombe, C.; Harvey, C. C.; Wu, C. S.

    1986-01-01

    The analysis of the fluid continuum level within the shock layer observed on November 7, 1977 by the ISEE satellites (Scudder et al., 1986) is extended to examine, within the framework of Vlasov electrodynamics, direct observational evidence for 'collisionless' resistivity. The analysis is based on the measured wave turbulence and the deviation of the observed electron velocity distribution function from the form predicted using the reversible individual electron trajectories in the presence of dc forces.

  11. Global Existence to the Vlasov-Poisson System and Propagation of Moments Without Assumption of Finite Kinetic Energy

    NASA Astrophysics Data System (ADS)

    Chen, Zili; Zhang, Xianwen

    2016-05-01

    We consider classical as well as weak solutions to the three dimensional Vlasov-Poisson system. Without assuming finiteness of kinetic energy, we prove global existence of classical solutions by assuming the initial datum is smooth enough and has a compact velocity-spatial support, which will be specified in Theorem 1.1. We also establish some propagation results for low moments of weak solutions.

  12. Kinetic electron bounce instability in a 2D current sheet - Implication for substorm dynamics

    NASA Astrophysics Data System (ADS)

    Fruit, G.; Tur, A.; Louarn, P.

    2013-12-01

    In the general context of understanding the possible destabilization of the magnetotail before a substorm, we propose a kinetic model for electromagnetic ballooning-type instabilities in resonant interaction with trapped bouncing electrons in a 2D current sheet. Tur et al. 2010 and Fruit et al. 2013 already used this model to investigate the possibilities of electrostatic instabilities. Here, we generalize the model for full electromagnetic perturbations. Starting with a modified Harris sheet as equilibrium state, the linearized gyrokinetic Vlasov equation is solved for electromagnetic fluctuations with period of the order of the electron bounce period. The particle motion is restricted to its first Fourier component along the magnetic field and this allows the complete time integration of the non local perturbed distribution functions. The dispersion relation for electromagnetic modes is finally obtained through the quasineutrality condition and the Ampere's law for the current density. It is found that for mildly stretched current sheet (Bz > 0.1 Blobes) undamped and stable modes oscillate at typical electron bounce frequency with wavelength (in y) of the order of the plasma sheet thickness. As the stretching of the plasma sheet becomes more intense, the frequency of these normal modes decreases and beyond a certain threshold in epsilon=Bz/Blobes < 0.05 typically, the mode becomes explosive (pure imaginary frequency) with typical growing rate of a few tens of seconds. The free energy contained in the electron bouncing motion could thus trigger and drive an electromagnetic instability able to disrupt the cross-tail current in a few seconds. The role of the temperature ratio Te/Ti is also evaluated.

  13. A new inversion method for (T2, D) 2D NMR logging and fluid typing

    NASA Astrophysics Data System (ADS)

    Tan, Maojin; Zou, Youlong; Zhou, Cancan

    2013-02-01

    One-dimensional nuclear magnetic resonance (1D NMR) logging technology has some significant limitations in fluid typing. However, not only can two-dimensional nuclear magnetic resonance (2D NMR) provide some accurate porosity parameters, but it can also identify fluids more accurately than 1D NMR. In this paper, based on the relaxation mechanism of (T2, D) 2D NMR in a gradient magnetic field, a hybrid inversion method that combines least-squares-based QR decomposition (LSQR) and truncated singular value decomposition (TSVD) is examined in the 2D NMR inversion of various fluid models. The forward modeling and inversion tests are performed in detail with different acquisition parameters, such as magnetic field gradients (G) and echo spacing (TE) groups. The simulated results are discussed and described in detail, the influence of the above-mentioned observation parameters on the inversion accuracy is investigated and analyzed, and the observation parameters in multi-TE activation are optimized. Furthermore, the hybrid inversion can be applied to quantitatively determine the fluid saturation. To study the effects of noise level on the hybrid method and inversion results, the numerical simulation experiments are performed using different signal-to-noise-ratios (SNRs), and the effect of different SNRs on fluid typing using three fluid models are discussed and analyzed in detail.

  14. A Class of Dust-Like Self-Similar Solutions of the Massless Einstein-Vlasov System

    NASA Astrophysics Data System (ADS)

    Rendall, Alan D.; Velázquez, Juan J. L.

    2011-07-01

    In this paper the existence of a class of self-similar solutions of the Einstein-Vlasov system is proved. The initial data for these solutions are not smooth, with their particle density being supported in a submanifold of codimension one. They can be thought of as intermediate between smooth solutions of the Einstein-Vlasov system and dust. The motivation for studying them is to obtain insights into possible violation of weak cosmic censorship by solutions of the Einstein-Vlasov system. By assuming a suitable form of the unknowns it is shown that the existence question can be reduced to that of the existence of a certain type of solution of a four-dimensional system of ordinary differential equations depending on two parameters. This solution starts at a particular point $P_0$ and converges to a stationary solution $P_1$ as the independent variable tends to infinity. The existence proof is based on a shooting argument and involves relating the dynamics of solutions of the four-dimensional system to that of solutions of certain two- and three-dimensional systems obtained from it by limiting processes.

  15. Quantitative analysis of numerical solvers for oscillatory biomolecular system models

    PubMed Central

    Quo, Chang F; Wang, May D

    2008-01-01

    Background This article provides guidelines for selecting optimal numerical solvers for biomolecular system models. Because various parameters of the same system could have drastically different ranges from 10-15 to 1010, the ODEs can be stiff and ill-conditioned, resulting in non-unique, non-existing, or non-reproducible modeling solutions. Previous studies have not examined in depth how to best select numerical solvers for biomolecular system models, which makes it difficult to experimentally validate the modeling results. To address this problem, we have chosen one of the well-known stiff initial value problems with limit cycle behavior as a test-bed system model. Solving this model, we have illustrated that different answers may result from different numerical solvers. We use MATLAB numerical solvers because they are optimized and widely used by the modeling community. We have also conducted a systematic study of numerical solver performances by using qualitative and quantitative measures such as convergence, accuracy, and computational cost (i.e. in terms of function evaluation, partial derivative, LU decomposition, and "take-off" points). The results show that the modeling solutions can be drastically different using different numerical solvers. Thus, it is important to intelligently select numerical solvers when solving biomolecular system models. Results The classic Belousov-Zhabotinskii (BZ) reaction is described by the Oregonator model and is used as a case study. We report two guidelines in selecting optimal numerical solver(s) for stiff, complex oscillatory systems: (i) for problems with unknown parameters, ode45 is the optimal choice regardless of the relative error tolerance; (ii) for known stiff problems, both ode113 and ode15s are good choices under strict relative tolerance conditions. Conclusions For any given biomolecular model, by building a library of numerical solvers with quantitative performance assessment metric, we show that it is possible

  16. Radiofrequency Spectroscopy and Thermodynamics of Fermi Gases in the 2D to Quasi-2D Dimensional Crossover

    NASA Astrophysics Data System (ADS)

    Cheng, Chingyun; Kangara, Jayampathi; Arakelyan, Ilya; Thomas, John

    2016-05-01

    We tune the dimensionality of a strongly interacting degenerate 6 Li Fermi gas from 2D to quasi-2D, by adjusting the radial confinement of pancake-shaped clouds to control the radial chemical potential. In the 2D regime with weak radial confinement, the measured pair binding energies are in agreement with 2D-BCS mean field theory, which predicts dimer pairing energies in the many-body regime. In the qausi-2D regime obtained with increased radial confinement, the measured pairing energy deviates significantly from 2D-BCS theory. In contrast to the pairing energy, the measured radii of the cloud profiles are not fit by 2D-BCS theory in either the 2D or quasi-2D regimes, but are fit in both regimes by a beyond mean field polaron-model of the free energy. Supported by DOE, ARO, NSF, and AFOSR.

  17. Euler/Navier-Stokes Solvers Applied to Ducted Fan Configurations

    NASA Technical Reports Server (NTRS)

    Keith, Theo G., Jr.; Srivastava, Rakesh

    1997-01-01

    Due to noise considerations, ultra high bypass ducted fans have become a more viable design. These ducted fans typically consist of a rotor stage containing a wide chord fan and a stator stage. One of the concerns for this design is the classical flutter that keeps occurring in various unducted fan blade designs. These flutter are catastrophic and are to be avoided in the flight envelope of the engine. Some numerical investigations by Williams, Cho and Dalton, have suggested that a duct around a propeller makes it more unstable. This needs to be further investigated. In order to design an engine to safely perform a set of desired tasks, accurate information of the stresses on the blade during the entire cycle of blade motion is required. This requirement in turn demands that accurate knowledge of steady and unsteady blade loading be available. Aerodynamic solvers based on unsteady three-dimensional analysis will provide accurate and fast solutions and are best suited for aeroelastic analysis. The Euler solvers capture significant physics of the flowfield and are reasonably fast. An aerodynamic solver Ref. based on Euler equations had been developed under a separate grant from NASA Lewis in the past. Under the current grant, this solver has been modified to calculate the aeroelastic characteristics of unducted and ducted rotors. Even though, the aeroelastic solver based on three-dimensional Euler equations is computationally efficient, it is still very expensive to investigate the effects of multiple stages on the aeroelastic characteristics. In order to investigate the effects of multiple stages, a two-dimensional multi stage aeroelastic solver was also developed under this task, in collaboration with Dr. T. S. R. Reddy of the University of Toledo. Both of these solvers were applied to several test cases and validated against experimental data, where available.

  18. Competing coexisting phases in 2D water

    PubMed Central

    Zanotti, Jean-Marc; Judeinstein, Patrick; Dalla-Bernardina, Simona; Creff, Gaëlle; Brubach, Jean-Blaise; Roy, Pascale; Bonetti, Marco; Ollivier, Jacques; Sakellariou, Dimitrios; Bellissent-Funel, Marie-Claire

    2016-01-01

    The properties of bulk water come from a delicate balance of interactions on length scales encompassing several orders of magnitudes: i) the Hydrogen Bond (HBond) at the molecular scale and ii) the extension of this HBond network up to the macroscopic level. Here, we address the physics of water when the three dimensional extension of the HBond network is frustrated, so that the water molecules are forced to organize in only two dimensions. We account for the large scale fluctuating HBond network by an analytical mean-field percolation model. This approach provides a coherent interpretation of the different events experimentally (calorimetry, neutron, NMR, near and far infra-red spectroscopies) detected in interfacial water at 160, 220 and 250 K. Starting from an amorphous state of water at low temperature, these transitions are respectively interpreted as the onset of creation of transient low density patches of 4-HBonded molecules at 160 K, the percolation of these domains at 220 K and finally the total invasion of the surface by them at 250 K. The source of this surprising behaviour in 2D is the frustration of the natural bulk tetrahedral local geometry and the underlying very significant increase in entropy of the interfacial water molecules. PMID:27185018

  19. 2D Radiative Processes Near Cloud Edges

    NASA Technical Reports Server (NTRS)

    Varnai, T.

    2012-01-01

    Because of the importance and complexity of dynamical, microphysical, and radiative processes taking place near cloud edges, the transition zone between clouds and cloud free air has been the subject of intense research both in the ASR program and in the wider community. One challenge in this research is that the one-dimensional (1D) radiative models widely used in both remote sensing and dynamical simulations become less accurate near cloud edges: The large horizontal gradients in particle concentrations imply that accurate radiative calculations need to consider multi-dimensional radiative interactions among areas that have widely different optical properties. This study examines the way the importance of multidimensional shortwave radiative interactions changes as we approach cloud edges. For this, the study relies on radiative simulations performed for a multiyear dataset of clouds observed over the NSA, SGP, and TWP sites. This dataset is based on Microbase cloud profiles as well as wind measurements and ARM cloud classification products. The study analyzes the way the difference between 1D and 2D simulation results increases near cloud edges. It considers both monochromatic radiances and broadband radiative heating, and it also examines the influence of factors such as cloud type and height, and solar elevation. The results provide insights into the workings of radiative processes and may help better interpret radiance measurements and better estimate the radiative impacts of this critical region.

  20. Simulation of Yeast Cooperation in 2D.

    PubMed

    Wang, M; Huang, Y; Wu, Z

    2016-03-01

    Evolution of cooperation has been an active research area in evolutionary biology in decades. An important type of cooperation is developed from group selection, when individuals form spatial groups to prevent them from foreign invasions. In this paper, we study the evolution of cooperation in a mixed population of cooperating and cheating yeast strains in 2D with the interactions among the yeast cells restricted to their small neighborhoods. We conduct a computer simulation based on a game theoretic model and show that cooperation is increased when the interactions are spatially restricted, whether the game is of a prisoner's dilemma, snow drifting, or mutual benefit type. We study the evolution of homogeneous groups of cooperators or cheaters and describe the conditions for them to sustain or expand in an opponent population. We show that under certain spatial restrictions, cooperator groups are able to sustain and expand as group sizes become large, while cheater groups fail to expand and keep them from collapse. PMID:26988702

  1. Phase Engineering of 2D Tin Sulfides.

    PubMed

    Mutlu, Zafer; Wu, Ryan J; Wickramaratne, Darshana; Shahrezaei, Sina; Liu, Chueh; Temiz, Selcuk; Patalano, Andrew; Ozkan, Mihrimah; Lake, Roger K; Mkhoyan, K A; Ozkan, Cengiz S

    2016-06-01

    Tin sulfides can exist in a variety of phases and polytypes due to the different oxidation states of Sn. A subset of these phases and polytypes take the form of layered 2D structures that give rise to a wide host of electronic and optical properties. Hence, achieving control over the phase, polytype, and thickness of tin sulfides is necessary to utilize this wide range of properties exhibited by the compound. This study reports on phase-selective growth of both hexagonal tin (IV) sulfide SnS2 and orthorhombic tin (II) sulfide SnS crystals with diameters of over tens of microns on SiO2 substrates through atmospheric pressure vapor-phase method in a conventional horizontal quartz tube furnace with SnO2 and S powders as the source materials. Detailed characterization of each phase of tin sulfide crystals is performed using various microscopy and spectroscopy methods, and the results are corroborated by ab initio density functional theory calculations. PMID:27099950

  2. Ion Transport in 2-D Graphene Nanochannels

    NASA Astrophysics Data System (ADS)

    Xie, Quan; Foo, Elbert; Duan, Chuanhua

    2015-11-01

    Graphene membranes have recently attracted wide attention due to its great potential in water desalination and selective molecular sieving. Further developments of these membranes, including enhancing their mass transport rate and/or molecular selectivity, rely on the understanding of fundamental transport mechanisms through graphene membranes, which has not been studied experimentally before due to fabrication and measurement difficulties. Herein we report the fabrication of the basic constituent of graphene membranes, i.e. 2-D single graphene nanochannels (GNCs) and the study of ion transport in these channels. A modified bonding technique was developed to form GNCs with well-defined geometry and uniform channel height. Ion transport in such GNCs was studied using DC conductance measurement. Our preliminary results showed that the ion transport in GNCs is still governed by surface charge at low concentrations (10-6M to 10-4M). However, GNCs exhibits much higher ionic conductances than silica nanochannels with the same geometries in the surface-charge-governed regime. This conductance enhancement can be attributed to the pre-accumulation of charges on graphene surfaces. The work is supported by the Faculty Startup Fund (Boston University, USA).

  3. Parallel map analysis on 2-D grids

    SciTech Connect

    Berry, M.; Comiskey, J.; Minser, K.

    1993-12-31

    In landscape ecology, computer modeling is used to assess habitat fragmentation and its ecological iMPLications. Specifically, maps (2-D grids) of habitat clusters must be analyzed to determine number, sizes and geometry of clusters. Models prior to this study relied upon sequential Fortran-77 programs which limited the sizes of maps and densities of clusters which could be analyzed. In this paper, we present more efficient computer models which can exploit recursion or parallelism. Significant improvements over the original Fortran-77 programs have been achieved using both recursive and nonrecursive C implementations on a variety of workstations such as the Sun Sparc 2, IBM RS/6000-350, and HP 9000-750. Parallel implementations on a 4096-processor MasPar MP-1 and a 32-processor CM-5 are also studied. Preliminary experiments suggest that speed improvements for the parallel model on the MasPar MP-1 (written in MPL) and on the CM-5 (written in C using CMMD) can be as much as 39 and 34 times faster, respectively, than the most efficient sequential C program on a Sun Sparc 2 for a 512 map. An important goal in this research effort is to produce a scalable map analysis algorithm for the identification and characterization of clusters for relatively large maps on massively-parallel computers.

  4. 2D Turbulence with Complicated Boundaries

    NASA Astrophysics Data System (ADS)

    Roullet, G.; McWilliams, J. C.

    2014-12-01

    We examine the consequences of lateral viscous boundary layers on the 2D turbulence that arises in domains with complicated boundaries (headlands, bays etc). The study is carried out numerically with LES. The numerics are carefully designed to ensure all global conservation laws, proper boundary conditions and a minimal range of dissipation scales. The turbulence dramatically differs from the classical bi-periodic case. Boundary layer separations lead to creation of many small vortices and act as a continuing energy source exciting the inverse cascade of energy throughout the domain. The detachments are very intermittent in time. In free decay, the final state depends on the effective numerical resolution: laminar with a single dominant vortex for low Re and turbulent with many vortices for large enough Re. After very long time, the turbulent end-state exhibits a striking tendency for the emergence of shielded vortices which then interact almost elastically. In the forced case, the boundary layers allow the turbulence to reach a statistical steady state without any artificial hypo-viscosity or other large-scale dissipation. Implications are discussed for the oceanic mesoscale and submesoscale turbulence.

  5. Competing coexisting phases in 2D water

    NASA Astrophysics Data System (ADS)

    Zanotti, Jean-Marc; Judeinstein, Patrick; Dalla-Bernardina, Simona; Creff, Gaëlle; Brubach, Jean-Blaise; Roy, Pascale; Bonetti, Marco; Ollivier, Jacques; Sakellariou, Dimitrios; Bellissent-Funel, Marie-Claire

    2016-05-01

    The properties of bulk water come from a delicate balance of interactions on length scales encompassing several orders of magnitudes: i) the Hydrogen Bond (HBond) at the molecular scale and ii) the extension of this HBond network up to the macroscopic level. Here, we address the physics of water when the three dimensional extension of the HBond network is frustrated, so that the water molecules are forced to organize in only two dimensions. We account for the large scale fluctuating HBond network by an analytical mean-field percolation model. This approach provides a coherent interpretation of the different events experimentally (calorimetry, neutron, NMR, near and far infra-red spectroscopies) detected in interfacial water at 160, 220 and 250 K. Starting from an amorphous state of water at low temperature, these transitions are respectively interpreted as the onset of creation of transient low density patches of 4-HBonded molecules at 160 K, the percolation of these domains at 220 K and finally the total invasion of the surface by them at 250 K. The source of this surprising behaviour in 2D is the frustration of the natural bulk tetrahedral local geometry and the underlying very significant increase in entropy of the interfacial water molecules.

  6. Competing coexisting phases in 2D water.

    PubMed

    Zanotti, Jean-Marc; Judeinstein, Patrick; Dalla-Bernardina, Simona; Creff, Gaëlle; Brubach, Jean-Blaise; Roy, Pascale; Bonetti, Marco; Ollivier, Jacques; Sakellariou, Dimitrios; Bellissent-Funel, Marie-Claire

    2016-01-01

    The properties of bulk water come from a delicate balance of interactions on length scales encompassing several orders of magnitudes: i) the Hydrogen Bond (HBond) at the molecular scale and ii) the extension of this HBond network up to the macroscopic level. Here, we address the physics of water when the three dimensional extension of the HBond network is frustrated, so that the water molecules are forced to organize in only two dimensions. We account for the large scale fluctuating HBond network by an analytical mean-field percolation model. This approach provides a coherent interpretation of the different events experimentally (calorimetry, neutron, NMR, near and far infra-red spectroscopies) detected in interfacial water at 160, 220 and 250 K. Starting from an amorphous state of water at low temperature, these transitions are respectively interpreted as the onset of creation of transient low density patches of 4-HBonded molecules at 160 K, the percolation of these domains at 220 K and finally the total invasion of the surface by them at 250 K. The source of this surprising behaviour in 2D is the frustration of the natural bulk tetrahedral local geometry and the underlying very significant increase in entropy of the interfacial water molecules. PMID:27185018

  7. 2-D wavelet with position controlled resolution

    NASA Astrophysics Data System (ADS)

    Walczak, Andrzej; Puzio, Leszek

    2005-09-01

    Wavelet transformation localizes all irregularities in the scene. It is most effective in the case when intensities in the scene have no sharp details. It is the case often present in a medical imaging. To identify the shape one has to extract it from the scene as typical irregularity. When the scene does not contain sharp changes then common differential filters are not efficient tool for a shape extraction. The new 2-D wavelet for such task has been proposed. Described wavelet transform is axially symmetric and has varied scale in dependence on the distance from the centre of the wavelet symmetry. The analytical form of the wavelet has been presented as well as its application for details extraction in the scene. Most important feature of the wavelet transform is that it gives a multi-scale transformation, and if zoom is on the wavelet selectivity varies proportionally to the zoom step. As a result, the extracted shape does not change during zoom operation. What is more the wavelet selectivity can be fit to the local intensity gradient properly to obtain best extraction of the irregularities.

  8. 2-D Animation's Not Just for Mickey Mouse.

    ERIC Educational Resources Information Center

    Weinman, Lynda

    1995-01-01

    Discusses characteristics of two-dimensional (2-D) animation; highlights include character animation, painting issues, and motion graphics. Sidebars present Silicon Graphics animations tools and 2-D animation programs for the desktop computer. (DGM)

  9. Continuum kinetic plasma modeling by the Vlasov-Maxwell system in multiple dimensions

    NASA Astrophysics Data System (ADS)

    Reddell, Noah; Shumlak, Uri

    2014-10-01

    A kinetic plasma model for multiple particle species described by the Vlasov equation and coupled to fully dynamic electromagnetic forces is presented. The model is implemented as evolving continuous PDFs (probability density functions) in particle phase space (position-velocity) as opposed to particle-in-cell (PIC) methods which discretely sample the PDF. The hyperbolic model is evolved using a high-order finite element method (discontinuous Galerkin), with excellent conservation of system mass, momentum, and energy - an advantage compared to PIC. Simulations of two- to six-dimensional phase space while resolving the plasma frequency and cyclotron frequency are computationally expensive. To maximize performance and scaling to large simulations, a new framework, WARPM, has been developed for many-core (e.g. GPU) computing architectures. WARPM supports both multi-fluid and continuum kinetic plasma models as coupled hyperbolic systems with nearest neighbor predictable communication. Simulation results are compared to existing benchmark problems and newly achievable studies of wave-particle interactions are presented. This research was supported by a grant from the United States Air Force Office of Scientific Research and Dept. of Energy Computational Science Graduate Fellowship.

  10. Direct Vlasov simulations of electron-attracting cylindrical Langmuir probes in flowing plasmas

    SciTech Connect

    Sánchez-Arriaga, G.; Pastor-Moreno, D.

    2014-07-15

    Current collection by positively polarized cylindrical Langmuir probes immersed in flowing plasmas is analyzed using a non-stationary direct Vlasov-Poisson code. A detailed description of plasma density spatial structure as a function of the probe-to-plasma relative velocity U is presented. Within the considered parametric domain, the well-known electron density maximum close to the probe is weakly affected by U. However, in the probe wake side, the electron density minimum becomes deeper as U increases and a rarified plasma region appears. Sheath radius is larger at the wake than at the front side. Electron and ion distribution functions show specific features that are the signature of probe motion. In particular, the ion distribution function at the probe front side exhibits a filament with positive radial velocity. It corresponds to a population of rammed ions that were reflected by the electric field close to the positively biased probe. Numerical simulations reveal that two populations of trapped electrons exist: one orbiting around the probe and the other with trajectories confined at the probe front side. The latter helps to neutralize the reflected ions, thus explaining a paradox in past probe theory.

  11. Meshless Solution of the Vlasov Equation Using a Low Discrepancy Sequence

    SciTech Connect

    Warnock, R.L.; Ellison, J.A.; Heinemann, K.; Zhang, G.Q.; /New Mexico U.

    2009-01-28

    A good method for solving the nonlinear Vlasov equation is the semi-Lagrangian algorithm, in which the phase space density is represented by its values on a fixed Cartesian grid with interpolation to off-grid points. At each time step, orbits are followed backward from grid points. Since this method is expensive with phase space dimension D > 2, we seek a more efficient discretization of the density. Taking a cue from the theory of numerical quadrature in high dimensions, we explore the idea of replacing the grid by scattered data sites from a low-discrepancy (quasirandom) sequence. We hope to see a reduction in the required number of sites, especially for D > 2. In our first implementation we follow forward orbits rather than backward, and work only with D = 2. We are able to reduce the number of sites by a factor of 8, at least for a limited time of integration. A much bigger reduction is expected in higher dimensions.

  12. A simple class of singular, two species Vlasov equilibria sustaining nonmonotonic potential distributions

    NASA Astrophysics Data System (ADS)

    Nocera, L.; Palumbo, L. J.

    2013-01-01

    We present new elementary, exact weak singular solutions of the steady state, two species, electrostatic, one dimensional Vlasov-Poisson equations. The distribution of the hot, finite mass, mobile ions is assumed to be log singular at the position of the electric potential's minimum. We show that the electron energy distributions on opposite sides of this minimum are not equal. This leads to a jump discontinuity of the electron distribution across its separatrix. A simple relation exists between the difference of these two electron distributions and that of the ions. The velocity Fourier transform of the electron singular distribution is smooth and appears as a simple Neumann series. Elementary, finite amplitude profiles of the electric potential result from Poisson equation, which are smoothly, but nonmonotonically and asymmetrically distributed in space. Two such profiles are given explicitly as appropriate for a nonmonotonic double layer and for a plasma bounded by a surface. The distributions of both electrons and ions supporting such potential meet smooth and kinetically stable boundary conditions at one plasma boundary. For sufficiently small potential to electron temperature ratios, the nonthermal, discontinuous electron distribution resulting at the other plasma boundary is also stable against Landau damped perturbations of the electron distribution.

  13. Hybrid Vlasov-Maxwell simulations of two-dimensional turbulence in plasmas

    SciTech Connect

    Valentini, F.; Servidio, S.; Veltri, P.; Perrone, D.; Califano, F.; Matthaeus, W. H.

    2014-08-15

    Turbulence in plasmas is a very challenging problem since it involves wave-particle interactions, which are responsible for phenomena such as plasma dissipation, acceleration mechanisms, heating, temperature anisotropy, and so on. In this work, a hybrid Vlasov-Maxwell numerical code is employed to study local kinetic processes in a two-dimensional turbulent regime. In the present model, ions are treated as a kinetic species, while electrons are considered as a fluid. As recently reported in [S. Servidio, Phys. Rev. Lett. 108, 045001 (2012)], nearby regions of strong magnetic activity, kinetic effects manifest through a deformation of the ion velocity distribution function that consequently departs from the equilibrium Maxwellian configuration. Here, the structure of turbulence is investigated in detail in phase space, by evaluating the high-order moments of the particle velocity distribution, i.e., temperature, skewness, and kurtosis. This analysis provides quantitative information about the non-Maxwellian character of the system dynamics. This departure from local thermodynamic equilibrium triggers several processes commonly observed in many astrophysical and laboratory plasmas.

  14. A novel technique for the numerical simulation of hot collision-free plasma; Vlasov hybrid simulation

    SciTech Connect

    Nunn, D. )

    1993-09-01

    This paper reports a simple novel technique for the numerical simulation of hot collision-free plasmas. The method is termed Vlasov hybrid simulation (VHS). A time varying phase space simulation box and grid are defined, and the phase fluid within the box is filled with simulation particles. The distribution function F (or [sigma]F) is defined on the phase trajectory of each particle. At each timestep F (or [sigma]F) is interpolated from the simulation particles onto the phase space grid. Particles are followed continuously until exiting from the phase box and are not constantly recreated at phase space grid points. The algorithm is very efficient, stable, and has low noise levels. Distribution function fine structure is tolerated and the formalism does not require diffusion of the distribution function. The VHS method is particularly valuable when the flux of phase fluid across the phase box boundary is significant. In this case VHS codes have a dynamic population of particles-giving great efficiency gains over PIC codes with fixed particle populations. The VHS method has been applied to the numerical simulation of triggered VLF emissions in the magnetosphere and gives results in close agreement with observations. 27 refs., 13 figs., 1 tab.

  15. Analysis of Vlasov Antenna as a Load for High Power Microwave Sources

    NASA Astrophysics Data System (ADS)

    Gibbs, Aimee N.; Luginsland, John W.

    1998-11-01

    The Magnetically Insulated Line Oscillator (MILO) and the Relativistic Klystron Oscillator (RKO) both produce microwave radiation at gigawatt power levels. In each case, the presence of a structure capable of radiating at this power is critical for efficient operation of the source. Furthermore, design of such a structure is an interesting and challenging problem. One radiating structure candidate is the Vlasov antenna, which consists of a cylindrical waveguide with a slant cut. The simple design allows immediate use, and the surface electric field is typically sufficently small to prevent electrical breakdown, thereby enhancing reliability. Computational analysis of the antenna is performed using the Phased ARray ANtenna Analysis (PARANA) software, which is based on a hybrid finite element method with integral radiation boundary conditions. Simulations of several design variations are performed, including various cut angles and a ``snubbed'' design that is used in current experiments because it satisfies certain length constraints. Results indicate that for certain frequencies, corresponding to MILO operation, use of the ``snubbed'' design results in regions of high electric field in the antenna aperture. Simulations are compared to experimental results.

  16. From one-dimensional fields to Vlasov equilibria: Theory and application of Hermite polynomials

    NASA Astrophysics Data System (ADS)

    Allanson, Oliver; Neukirch, Thomas; Troscheit, Sascha; Wilson, Fiona

    2016-06-01

    We consider the theory and application of a solution method for the inverse problem in collisionless equilibria, namely that of calculating a Vlasov-Maxwell equilibrium for a given macroscopic (fluid) equilibrium. Using Jeans' theorem, the equilibrium distribution functions are expressed as functions of the constants of motion, in the form of a Maxwellian multiplied by an unknown function of the canonical momenta. In this case it is possible to reduce the inverse problem to inverting Weierstrass transforms, which we achieve by using expansions over Hermite polynomials. A sufficient condition on the pressure tensor is found which guarantees the convergence and the boundedness of the candidate solution, when satisfied. This condition is obtained by elementary means, and it is clear how to put it into practice. We also argue that for a given pressure tensor for which our method applies, there always exists a positive distribution function solution for a sufficiently magnetised plasma. Illustrative examples of the use of this method with both force-free and non-force-free macroscopic equilibria are presented, including the full verification of a recently derived distribution function for the force-free Harris sheet (Allanson et al., Phys. Plasmas, vol. 22 (10), 2015, 102116). In the effort to model equilibria with lower values of the plasma β, solutions for the same macroscopic equilibrium in a new gauge are calculated, with numerical results presented for β_{pl}=0.05.

  17. A simple class of singular, two species Vlasov equilibria sustaining nonmonotonic potential distributions

    SciTech Connect

    Nocera, L.; Palumbo, L. J.

    2013-01-15

    We present new elementary, exact weak singular solutions of the steady state, two species, electrostatic, one dimensional Vlasov-Poisson equations. The distribution of the hot, finite mass, mobile ions is assumed to be log singular at the position of the electric potential's minimum. We show that the electron energy distributions on opposite sides of this minimum are not equal. This leads to a jump discontinuity of the electron distribution across its separatrix. A simple relation exists between the difference of these two electron distributions and that of the ions. The velocity Fourier transform of the electron singular distribution is smooth and appears as a simple Neumann series. Elementary, finite amplitude profiles of the electric potential result from Poisson equation, which are smoothly, but nonmonotonically and asymmetrically distributed in space. Two such profiles are given explicitly as appropriate for a nonmonotonic double layer and for a plasma bounded by a surface. The distributions of both electrons and ions supporting such potential meet smooth and kinetically stable boundary conditions at one plasma boundary. For sufficiently small potential to electron temperature ratios, the nonthermal, discontinuous electron distribution resulting at the other plasma boundary is also stable against Landau damped perturbations of the electron distribution.

  18. Highly efficient numerical algorithm based on random trees for accelerating parallel Vlasov-Poisson simulations

    NASA Astrophysics Data System (ADS)

    Acebrón, Juan A.; Rodríguez-Rozas, Ángel

    2013-10-01

    An efficient numerical method based on a probabilistic representation for the Vlasov-Poisson system of equations in the Fourier space has been derived. This has been done theoretically for arbitrary dimensional problems, and particularized to unidimensional problems for numerical purposes. Such a representation has been validated theoretically in the linear regime comparing the solution obtained with the classical results of the linear Landau damping. The numerical strategy followed requires generating suitable random trees combined with a Padé approximant for approximating accurately a given divergent series. Such series are obtained by summing the partial contributions to the solution coming from trees with arbitrary number of branches. These contributions, coming in general from multi-dimensional definite integrals, are efficiently computed by a quasi-Monte Carlo method. It is shown how the accuracy of the method can be effectively increased by considering more terms of the series. The new representation was used successfully to develop a Probabilistic Domain Decomposition method suited for massively parallel computers, which improves the scalability found in classical methods. Finally, a few numerical examples based on classical phenomena such as the non-linear Landau damping, and the two streaming instability are given, illustrating the remarkable performance of the algorithm, when compared the results with those obtained using a classical method.

  19. Vlasov Simulation of Electrostatic Solitary Structures in Multi-Component Plasmas

    NASA Technical Reports Server (NTRS)

    Umeda, Takayuki; Ashour-Abdalla, Maha; Pickett, Jolene S.; Goldstein, Melvyn L.

    2012-01-01

    Electrostatic solitary structures have been observed in the Earth's magnetosheath by the Cluster spacecraft. Recent theoretical work has suggested that these solitary structures are modeled by electron acoustic solitary waves existing in a four-component plasma system consisting of core electrons, two counter-streaming electron beams, and one species of background ions. In this paper, the excitation of electron acoustic waves and the formation of solitary structures are studied by means of a one-dimensional electrostatic Vlasov simulation. The present result first shows that either electron acoustic solitary waves with negative potential or electron phase-space holes with positive potential are excited in four-component plasma systems. However, these electrostatic solitary structures have longer duration times and higher wave amplitudes than the solitary structures observed in the magnetosheath. The result indicates that a high-speed and small free energy source may be needed as a fifth component. An additional simulation of a five-component plasma consisting of a stable four-component plasma and a weak electron beam shows the generation of small and fast electron phase-space holes by the bump-on-tail instability. The physical properties of the small and fast electron phase-space holes are very similar to those obtained by the previous theoretical analysis. The amplitude and duration time of solitary structures in the simulation are also in agreement with the Cluster observation.

  20. Optimal ?-Control for the Global Cauchy Problem of The Relativistic Vlasov-Poisson System

    NASA Astrophysics Data System (ADS)

    Young, Brent

    2011-12-01

    Recently, M.K.-H. Kiessling and A.S. Tahvildar-Zadeh proved that a unique global classical solution to the relativistic Vlasov-Poisson system exists whenever the positive, integrable initial datum is spherically symmetric, compactly supported in momentum space, vanishes on characteristics with vanishing angular momentum, and for β⩾3/2 has ?-norm strictly below a positive, critical value ?. Everything else being equal, data leading to finite time blow-up can be found with ?-norm surpassing ? for any β>1, with ? if and only if β⩾3/2. In their paper, the critical value for β=3/2 is calculated explicitly while the value for all other β is merely characterized as the infimum of a functional over an appropriate function space. In this work, the existence of minimizers is established, and the exact expression of ? is calculated in terms of the famous Lane-Emden functions. Numerical computations of the ? are presented along with some elementary asymptotics near the critical exponent 3/2.

  1. On Higher-order Corrections to Gyrokinetic Vlasov-Poisson Equations in the Long Wavelength Limit

    SciTech Connect

    W.W. Lee and R.A. Kolesnikov

    2009-02-17

    In this paper, we present a simple iterative procedure for obtaining the higher order E x B and dE/dt (polarization) drifts associated with the gyrokinetic Vlasov-Poisson equations in the long wavelength limit of k⊥ρi ~ o(ε) and k⊥L ~ o(1), where ρi is the ion gyroradius, L is the scale length of the background inhomogeneity and ε is a smallness parameter. It can be shown that these new higher order k⊥ρi terms, which are also related to the higher order perturbations of the electrostatic potential Φ, should have negligible effects on turbulent and neoclassical transport in tokamaks, regardless of the form of the background distribution and the amplitude of the perturbation. To address further the issue of a non-Maxwellian plasma, higher order finite Larmor radius terms in the gyrokinetic Poisson's equation have been studied and shown to be unimportant as well. On the other hand, the terms of o(k2⊥ρi2) ~ o(ε) and k⊥L ~ o(1) can indeed have impact on microturbulence, especially in the linear stage, such as those arising from the difference between the guiding center and the gyrocenter densities due to the presence of the background gradients. These results will be compared with a recent study questioning the validity of the commonly used gyrokinetic equations for long time simulations.

  2. From one-dimensional fields to Vlasov equilibria: Theory and application of Hermite polynomials

    NASA Astrophysics Data System (ADS)

    Allanson, Oliver; Neukirch, Thomas; Troscheit, Sascha; Wilson, Fiona

    2016-06-01

    We consider the theory and application of a solution method for the inverse problem in collisionless equilibria, namely that of calculating a Vlasov-Maxwell equilibrium for a given macroscopic (fluid) equilibrium. Using Jeans’ theorem, the equilibrium distribution functions are expressed as functions of the constants of motion, in the form of a Maxwellian multiplied by an unknown function of the canonical momenta. In this case it is possible to reduce the inverse problem to inverting Weierstrass transforms, which we achieve by using expansions over Hermite polynomials. A sufficient condition on the pressure tensor is found which guarantees the convergence and the boundedness of the candidate solution, when satisfied. This condition is obtained by elementary means, and it is clear how to put it into practice. We also argue that for a given pressure tensor for which our method applies, there always exists a positive distribution function solution for a sufficiently magnetised plasma. Illustrative examples of the use of this method with both force-free and non-force-free macroscopic equilibria are presented, including the full verification of a recently derived distribution function for the force-free Harris sheet (Allanson et al., Phys. Plasmas, vol. 22 (10), 2015, 102116). In the effort to model equilibria with lower values of the plasma β, solutions for the same macroscopic equilibrium in a new gauge are calculated, with numerical results presented for β_{pl}=0.05.

  3. Linear Vlasov theory in the shearing sheet approximation with application to the magneto-rotational instability

    SciTech Connect

    Heinemann, Tobias; Quataert, Eliot E-mail: eliot@berkeley.edu

    2014-09-01

    We derive the conductivity tensor for axisymmetric perturbations of a hot, collisionless, and charge-neutral plasma in the shearing sheet approximation. Our results generalize the well-known linear Vlasov theory for uniform plasmas to differentially rotating plasmas and can be used for wide range of kinetic stability calculations. We apply these results to the linear theory of the magneto-rotational instability (MRI) in collisionless plasmas. We show analytically and numerically how the general kinetic theory results derived here reduce in appropriate limits to previous results in the literature, including the low-frequency guiding center (or 'kinetic MHD') approximation, Hall magnetohydrodynamics (MHD), and the gyro-viscous approximation. We revisit the cold plasma model of the MRI and show that, contrary to previous results, an initially unmagnetized collisionless plasma is linearly stable to axisymmetric perturbations in the cold plasma approximation. In addition to their application to astrophysical plasmas, our results provide a useful framework for assessing the linear stability of differentially rotating plasmas in laboratory experiments.

  4. Vlasov-Fokker-Planck Simulation of a Collisional Ion-Electron Shockwave

    NASA Astrophysics Data System (ADS)

    Taitano, William; Knoll, Dana; Prinja, Anil

    2012-10-01

    There has been recent increased interest in a range of kinetic plasma physics phenomena which may be important in simulating ICF pellet performance. [1] have numerically demonstrated the limitations of the classic Spitzer, Braginski fluid closures in collisional plasmas for shockwave problems. [1] has shown the importance of modeling kinetic effects for scale lengths of shockwave much larger than the ion collision mean free path. In [1], the ions were modeled kinetically using the Fokker-Planck approximation while the electrons were modeled as a fluid. An investigation of a full kinetic treatment of electron with collision is computationally intractable with standard explicit schemes due to collision CFL limitation that requires resolving the electron-electron collision timescale. [2] has developed a new, fully implicit and discretely consistent moment based accelerator method to solve the full ion-electron kinetic Vlasov-Ampere system. A similar moment based accelerator will be extended to a collisionless shock problem in order to accelerate the Fokker-Planck collision source in the kinetic equations. In the presentation, we provide some preliminary results. [4pt] [1] M. Casanova and O. Larroche, Phys. Rev. Let. 67-(16), 1991. [0pt] [2] W.T. Taitano et al. SISC in review.

  5. Equations of motion of test particles for solving the spin-dependent Boltzmann-Vlasov equation

    NASA Astrophysics Data System (ADS)

    Xia, Yin; Xu, Jun; Li, Bao-An; Shen, Wen-Qing

    2016-08-01

    A consistent derivation of the equations of motion (EOMs) of test particles for solving the spin-dependent Boltzmann-Vlasov equation is presented. The resulting EOMs in phase space are similar to the canonical equations in Hamiltonian dynamics, and the EOM of spin is the same as that in the Heisenburg picture of quantum mechanics. Considering further the quantum nature of spin and choosing the direction of total angular momentum in heavy-ion reactions as a reference of measuring nucleon spin, the EOMs of spin-up and spin-down nucleons are given separately. The key elements affecting the spin dynamics in heavy-ion collisions are identified. The resulting EOMs provide a solid foundation for using the test-particle approach in studying spin dynamics in heavy-ion collisions at intermediate energies. Future comparisons of model simulations with experimental data will help to constrain the poorly known in-medium nucleon spin-orbit coupling relevant for understanding properties of rare isotopes and their astrophysical impacts.

  6. MAZE96. Generates 2D Input for DYNA NIKE & TOPAZ

    SciTech Connect

    Sanford, L.; Hallquist, J.O.

    1992-02-24

    MAZE is an interactive program that serves as an input and two-dimensional mesh generator for DYNA2D, NIKE2D, TOPAZ2D, and CHEMICAL TOPAZ2D. MAZE also generates a basic template for ISLAND input. MAZE has been applied to the generation of input data to study the response of two-dimensional solids and structures undergoing finite deformations under a wide variety of large deformation transient dynamic and static problems and heat transfer analyses.

  7. On 2D graphical representation of DNA sequence of nondegeneracy

    NASA Astrophysics Data System (ADS)

    Zhang, Yusen; Liao, Bo; Ding, Kequan

    2005-08-01

    Some two-dimensional (2D) graphical representations of DNA sequences have been given by Gates, Nandy, Leong and Mogenthaler, Randić, and Liao et al., which give visual characterizations of DNA sequences. In this Letter, we introduce a nondegeneracy 2D graphical representation of DNA sequence, which is different from Randić's novel 2D representation and Liao's 2D representation. We also present the nondegeneracy forms corresponding to the representations of Gates, Nandy, Leong and Mogenthaler.

  8. Generates 2D Input for DYNA NIKE & TOPAZ

    1996-07-15

    MAZE is an interactive program that serves as an input and two-dimensional mesh generator for DYNA2D, NIKE2D, TOPAZ2D, and CHEMICAL TOPAZ2D. MAZE also generates a basic template for ISLAND input. MAZE has been applied to the generation of input data to study the response of two-dimensional solids and structures undergoing finite deformations under a wide variety of large deformation transient dynamic and static problems and heat transfer analyses.

  9. Performance Models for the Spike Banded Linear System Solver

    DOE PAGESBeta

    Manguoglu, Murat; Saied, Faisal; Sameh, Ahmed; Grama, Ananth

    2011-01-01

    With availability of large-scale parallel platforms comprised of tens-of-thousands of processors and beyond, there is significant impetus for the development of scalable parallel sparse linear system solvers and preconditioners. An integral part of this design process is the development of performance models capable of predicting performance and providing accurate cost models for the solvers and preconditioners. There has been some work in the past on characterizing performance of the iterative solvers themselves. In this paper, we investigate the problem of characterizing performance and scalability of banded preconditioners. Recent work has demonstrated the superior convergence properties and robustness of banded preconditioners,more » compared to state-of-the-art ILU family of preconditioners as well as algebraic multigrid preconditioners. Furthermore, when used in conjunction with efficient banded solvers, banded preconditioners are capable of significantly faster time-to-solution. Our banded solver, the Truncated Spike algorithm is specifically designed for parallel performance and tolerance to deep memory hierarchies. Its regular structure is also highly amenable to accurate performance characterization. Using these characteristics, we derive the following results in this paper: (i) we develop parallel formulations of the Truncated Spike solver, (ii) we develop a highly accurate pseudo-analytical parallel performance model for our solver, (iii) we show excellent predication capabilities of our model – based on which we argue the high scalability of our solver. Our pseudo-analytical performance model is based on analytical performance characterization of each phase of our solver. These analytical models are then parameterized using actual runtime information on target platforms. An important consequence of our performance models is that they reveal underlying performance bottlenecks in both serial and parallel formulations. All of our results are validated

  10. Ultrasonic 2D matrix PVDF transducer

    NASA Astrophysics Data System (ADS)

    Ptchelintsev, A.; Maev, R. Gr.

    2000-05-01

    During the past decade a substantial amount of work has been done in the area of ultrasonic imaging technology using 2D arrays. The main problems arising for the two-dimensional matrix transducers at megahertz frequencies are small size and huge count of the elements, high electrical impedance, low sensitivity, bad SNR and slower data acquisition rate. The major technological difficulty remains the high density of the interconnect. To solve these problems numerous approaches have been suggested. In the present work, a 24×24 elements (24 transmit+24 receive) matrix and a switching board were developed. The transducer consists of two 52 μm PVDF layers each representing a linear array of 24 elements placed one on the top of the other. Electrodes in these two layers are perpendicular and form the grid of 0.5×0.5 mm pitch. The layers are bonded together with the ground electrode being monolithic and located between the layers. The matrix is backed from the rear surface with an epoxy composition. During the emission, a linear element from the emitting layer generates a longitudinal wave pulse propagating inside the test object. Reflected pulses are picked-up by the receiving layer. During one transmit-receive cycle one transmit element and one receive element are selected by corresponding multiplexers. These crossed elements emulate a small element formed by their intersection. The present design presents the following advantages: minimizes number of active channels and density of the interconnect; reduces the electrical impedance of the element improving electrical matching; enables the transmit-receive mode; due to the efficient backing provides bandwidth and good time resolution; and, significantly reduces the electronics complexity. The matrix can not be used for the beam steering and focusing. Owing to this impossibility of focusing, the penetration depth is limited as well by the diffraction phenomena.

  11. The novel high-performance 3-D MT inverse solver

    NASA Astrophysics Data System (ADS)

    Kruglyakov, Mikhail; Geraskin, Alexey; Kuvshinov, Alexey

    2016-04-01

    We present novel, robust, scalable, and fast 3-D magnetotelluric (MT) inverse solver. The solver is written in multi-language paradigm to make it as efficient, readable and maintainable as possible. Separation of concerns and single responsibility concepts go through implementation of the solver. As a forward modelling engine a modern scalable solver extrEMe, based on contracting integral equation approach, is used. Iterative gradient-type (quasi-Newton) optimization scheme is invoked to search for (regularized) inverse problem solution, and adjoint source approach is used to calculate efficiently the gradient of the misfit. The inverse solver is able to deal with highly detailed and contrasting models, allows for working (separately or jointly) with any type of MT responses, and supports massive parallelization. Moreover, different parallelization strategies implemented in the code allow optimal usage of available computational resources for a given problem statement. To parameterize an inverse domain the so-called mask parameterization is implemented, which means that one can merge any subset of forward modelling cells in order to account for (usually) irregular distribution of observation sites. We report results of 3-D numerical experiments aimed at analysing the robustness, performance and scalability of the code. In particular, our computational experiments carried out at different platforms ranging from modern laptops to HPC Piz Daint (6th supercomputer in the world) demonstrate practically linear scalability of the code up to thousands of nodes.

  12. Performance of Nonlinear Finite-Difference Poisson-Boltzmann Solvers.

    PubMed

    Cai, Qin; Hsieh, Meng-Juei; Wang, Jun; Luo, Ray

    2010-01-12

    We implemented and optimized seven finite-difference solvers for the full nonlinear Poisson-Boltzmann equation in biomolecular applications, including four relaxation methods, one conjugate gradient method, and two inexact Newton methods. The performance of the seven solvers was extensively evaluated with a large number of nucleic acids and proteins. Worth noting is the inexact Newton method in our analysis. We investigated the role of linear solvers in its performance by incorporating the incomplete Cholesky conjugate gradient and the geometric multigrid into its inner linear loop. We tailored and optimized both linear solvers for faster convergence rate. In addition, we explored strategies to optimize the successive over-relaxation method to reduce its convergence failures without too much sacrifice in its convergence rate. Specifically we attempted to adaptively change the relaxation parameter and to utilize the damping strategy from the inexact Newton method to improve the successive over-relaxation method. Our analysis shows that the nonlinear methods accompanied with a functional-assisted strategy, such as the conjugate gradient method and the inexact Newton method, can guarantee convergence in the tested molecules. Especially the inexact Newton method exhibits impressive performance when it is combined with highly efficient linear solvers that are tailored for its special requirement. PMID:24723843

  13. Adaptive kinetic-fluid solvers for heterogeneous computing architectures

    NASA Astrophysics Data System (ADS)

    Zabelok, Sergey; Arslanbekov, Robert; Kolobov, Vladimir

    2015-12-01

    We show feasibility and benefits of porting an adaptive multi-scale kinetic-fluid code to CPU-GPU systems. Challenges are due to the irregular data access for adaptive Cartesian mesh, vast difference of computational cost between kinetic and fluid cells, and desire to evenly load all CPUs and GPUs during grid adaptation and algorithm refinement. Our Unified Flow Solver (UFS) combines Adaptive Mesh Refinement (AMR) with automatic cell-by-cell selection of kinetic or fluid solvers based on continuum breakdown criteria. Using GPUs enables hybrid simulations of mixed rarefied-continuum flows with a million of Boltzmann cells each having a 24 × 24 × 24 velocity mesh. We describe the implementation of CUDA kernels for three modules in UFS: the direct Boltzmann solver using the discrete velocity method (DVM), the Direct Simulation Monte Carlo (DSMC) solver, and a mesoscopic solver based on the Lattice Boltzmann Method (LBM), all using adaptive Cartesian mesh. Double digit speedups on single GPU and good scaling for multi-GPUs have been demonstrated.

  14. A Planar Quantum Transistor Based on 2D-2D Tunneling in Double Quantum Well Heterostructures

    SciTech Connect

    Baca, W.E.; Blount, M.A.; Hafich, M.J.; Lyo, S.K.; Moon, J.S.; Reno, J.L.; Simmons, J.A.; Wendt, J.R.

    1998-12-14

    We report on our work on the double electron layer tunneling transistor (DELTT), based on the gate-control of two-dimensional -- two-dimensional (2D-2D) tunneling in a double quantum well heterostructure. While previous quantum transistors have typically required tiny laterally-defined features, by contrast the DELTT is entirely planar and can be reliably fabricated in large numbers. We use a novel epoxy-bond-and-stop-etch (EBASE) flip-chip process, whereby submicron gating on opposite sides of semiconductor epitaxial layers as thin as 0.24 microns can be achieved. Because both electron layers in the DELTT are 2D, the resonant tunneling features are unusually sharp, and can be easily modulated with one or more surface gates. We demonstrate DELTTs with peak-to-valley ratios in the source-drain I-V curve of order 20:1 below 1 K. Both the height and position of the resonant current peak can be controlled by gate voltage over a wide range. DELTTs with larger subband energy offsets ({approximately} 21 meV) exhibit characteristics that are nearly as good at 77 K, in good agreement with our theoretical calculations. Using these devices, we also demonstrate bistable memories operating at 77 K. Finally, we briefly discuss the prospects for room temperature operation, increases in gain, and high-speed.

  15. Parametrics on 2D Navier-Stokes analysis of a Mach 2.68 bifurcated rectangular mixed-compression inlet

    NASA Technical Reports Server (NTRS)

    Mizukami, M.; Saunders, J. D.

    1995-01-01

    The supersonic diffuser of a Mach 2.68 bifurcated, rectangular, mixed-compression inlet was analyzed using a two-dimensional (2D) Navier-Stokes flow solver. Parametric studies were performed on turbulence models, computational grids and bleed models. The computer flowfield was substantially different from the original inviscid design, due to interactions of shocks, boundary layers, and bleed. Good agreement with experimental data was obtained in many aspects. Many of the discrepancies were thought to originate primarily from 3D effects. Therefore, a balance should be struck between expending resources on a high fidelity 2D simulation, and the inherent limitations of 2D analysis. The solutions were fairly insensitive to turbulence models, grids and bleed models. Overall, the k-e turbulence model, and the bleed models based on unchoked bleed hole discharge coefficients or uniform velocity are recommended. The 2D Navier-Stokes methods appear to be a useful tool for the design and analysis of supersonic inlets, by providing a higher fidelity simulation of the inlet flowfield than inviscid methods, in a reasonable turnaround time.

  16. General Equation Set Solver for Compressible and Incompressible Turbomachinery Flows

    NASA Technical Reports Server (NTRS)

    Sondak, Douglas L.; Dorney, Daniel J.

    2002-01-01

    Turbomachines for propulsion applications operate with many different working fluids and flow conditions. The flow may be incompressible, such as in the liquid hydrogen pump in a rocket engine, or supersonic, such as in the turbine which may drive the hydrogen pump. Separate codes have traditionally been used for incompressible and compressible flow solvers. The General Equation Set (GES) method can be used to solve both incompressible and compressible flows, and it is not restricted to perfect gases, as are many compressible-flow turbomachinery solvers. An unsteady GES turbomachinery flow solver has been developed and applied to both air and water flows through turbines. It has been shown to be an excellent alternative to maintaining two separate codes.

  17. Two Solvers for Tractable Temporal Constraints with Preferences

    NASA Technical Reports Server (NTRS)

    Rossi, F.; Khatib,L.; Morris, P.; Morris, R.; Clancy, Daniel (Technical Monitor)

    2002-01-01

    A number of reasoning problems involving the manipulation of temporal information can naturally be viewed as implicitly inducing an ordering of potential local decisions involving time on the basis of preferences. Soft temporal constraints problems allow to describe in a natural way scenarios where events happen over time and preferences are associated to event distances and durations. In general, solving soft temporal problems require exponential time in the worst case, but there are interesting subclasses of problems which are polynomially solvable. We describe two solvers based on two different approaches for solving the same tractable subclass. For each solver we present the theoretical results it stands on, a description of the algorithm and some experimental results. The random generator used to build the problems on which tests are performed is also described. Finally, we compare the two solvers highlighting the tradeoff between performance and representational power.

  18. A multiple right hand side iterative solver for history matching

    SciTech Connect

    Killough, J.E.; Sharma, Y.; Dupuy, A.; Bissell, R.; Wallis, J.

    1995-12-31

    History matching of oil and gas reservoirs can be accelerated by directly calculating the gradients of observed quantities (e.g., well pressure) with respect to the adjustable reserve parameters (e.g., permeability). This leads to a set of linear equations which add a significant overhead to the full simulation run without gradients. Direct Gauss elimination solvers can be used to address this problem by performing the factorization of the matrix only once and then reusing the factor matrix for the solution of the multiple right hand sides. This is a limited technique, however. Experience has shown that problems with greater than few thousand cells may not be practical for direct solvers because of computation time and memory limitations. This paper discusses the implementation of a multiple right hand side iterative linear equation solver (MRHS) for a system of adjoint equations to significantly enhance the performance of a gradient simulator.

  19. Gpu Implementation of a Viscous Flow Solver on Unstructured Grids

    NASA Astrophysics Data System (ADS)

    Xu, Tianhao; Chen, Long

    2016-06-01

    Graphics processing units have gained popularities in scientific computing over past several years due to their outstanding parallel computing capability. Computational fluid dynamics applications involve large amounts of calculations, therefore a latest GPU card is preferable of which the peak computing performance and memory bandwidth are much better than a contemporary high-end CPU. We herein focus on the detailed implementation of our GPU targeting Reynolds-averaged Navier-Stokes equations solver based on finite-volume method. The solver employs a vertex-centered scheme on unstructured grids for the sake of being capable of handling complex topologies. Multiple optimizations are carried out to improve the memory accessing performance and kernel utilization. Both steady and unsteady flow simulation cases are carried out using explicit Runge-Kutta scheme. The solver with GPU acceleration in this paper is demonstrated to have competitive advantages over the CPU targeting one.

  20. Correlated Electron Phenomena in 2D Materials

    NASA Astrophysics Data System (ADS)

    Lambert, Joseph G.

    In this thesis, I present experimental results on coherent electron phenomena in layered two-dimensional materials: single layer graphene and van der Waals coupled 2D TiSe2. Graphene is a two-dimensional single-atom thick sheet of carbon atoms first derived from bulk graphite by the mechanical exfoliation technique in 2004. Low-energy charge carriers in graphene behave like massless Dirac fermions, and their density can be easily tuned between electron-rich and hole-rich quasiparticles with electrostatic gating techniques. The sharp interfaces between regions of different carrier densities form barriers with selective transmission, making them behave as partially reflecting mirrors. When two of these interfaces are set at a separation distance within the phase coherence length of the carriers, they form an electronic version of a Fabry-Perot cavity. I present measurements and analysis of multiple Fabry-Perot modes in graphene with parallel electrodes spaced a few hundred nanometers apart. Transition metal dichalcogenide (TMD) TiSe2 is part of the family of materials that coined the term "materials beyond graphene". It contains van der Waals coupled trilayer stacks of Se-Ti-Se. Many TMD materials exhibit a host of interesting correlated electronic phases. In particular, TiSe2 exhibits chiral charge density waves (CDW) below TCDW ˜ 200 K. Upon doping with copper, the CDW state gets suppressed with Cu concentration, and CuxTiSe2 becomes superconducting with critical temperature of T c = 4.15 K. There is still much debate over the mechanisms governing the coexistence of the two correlated electronic phases---CDW and superconductivity. I will present some of the first conductance spectroscopy measurements of proximity coupled superconductor-CDW systems. Measurements reveal a proximity-induced critical current at the Nb-TiSe2 interfaces, suggesting pair correlations in the pure TiSe2. The results indicate that superconducting order is present concurrently with CDW in

  1. CYP2D7 Sequence Variation Interferes with TaqMan CYP2D6*15 and *35 Genotyping

    PubMed Central

    Riffel, Amanda K.; Dehghani, Mehdi; Hartshorne, Toinette; Floyd, Kristen C.; Leeder, J. Steven; Rosenblatt, Kevin P.; Gaedigk, Andrea

    2016-01-01

    TaqMan™ genotyping assays are widely used to genotype CYP2D6, which encodes a major drug metabolizing enzyme. Assay design for CYP2D6 can be challenging owing to the presence of two pseudogenes, CYP2D7 and CYP2D8, structural and copy number variation and numerous single nucleotide polymorphisms (SNPs) some of which reflect the wild-type sequence of the CYP2D7 pseudogene. The aim of this study was to identify the mechanism causing false-positive CYP2D6*15 calls and remediate those by redesigning and validating alternative TaqMan genotype assays. Among 13,866 DNA samples genotyped by the CompanionDx® lab on the OpenArray platform, 70 samples were identified as heterozygotes for 137Tins, the key SNP of CYP2D6*15. However, only 15 samples were confirmed when tested with the Luminex xTAG CYP2D6 Kit and sequencing of CYP2D6-specific long range (XL)-PCR products. Genotype and gene resequencing of CYP2D6 and CYP2D7-specific XL-PCR products revealed a CC>GT dinucleotide SNP in exon 1 of CYP2D7 that reverts the sequence to CYP2D6 and allows a TaqMan assay PCR primer to bind. Because CYP2D7 also carries a Tins, a false-positive mutation signal is generated. This CYP2D7 SNP was also responsible for generating false-positive signals for rs769258 (CYP2D6*35) which is also located in exon 1. Although alternative CYP2D6*15 and *35 assays resolved the issue, we discovered a novel CYP2D6*15 subvariant in one sample that carries additional SNPs preventing detection with the alternate assay. The frequency of CYP2D6*15 was 0.1% in this ethnically diverse U.S. population sample. In addition, we also discovered linkage between the CYP2D7 CC>GT dinucleotide SNP and the 77G>A (rs28371696) SNP of CYP2D6*43. The frequency of this tentatively functional allele was 0.2%. Taken together, these findings emphasize that regardless of how careful genotyping assays are designed and evaluated before being commercially marketed, rare or unknown SNPs underneath primer and/or probe regions can impact

  2. CYP2D7 Sequence Variation Interferes with TaqMan CYP2D6 (*) 15 and (*) 35 Genotyping.

    PubMed

    Riffel, Amanda K; Dehghani, Mehdi; Hartshorne, Toinette; Floyd, Kristen C; Leeder, J Steven; Rosenblatt, Kevin P; Gaedigk, Andrea

    2015-01-01

    TaqMan™ genotyping assays are widely used to genotype CYP2D6, which encodes a major drug metabolizing enzyme. Assay design for CYP2D6 can be challenging owing to the presence of two pseudogenes, CYP2D7 and CYP2D8, structural and copy number variation and numerous single nucleotide polymorphisms (SNPs) some of which reflect the wild-type sequence of the CYP2D7 pseudogene. The aim of this study was to identify the mechanism causing false-positive CYP2D6 (*) 15 calls and remediate those by redesigning and validating alternative TaqMan genotype assays. Among 13,866 DNA samples genotyped by the CompanionDx® lab on the OpenArray platform, 70 samples were identified as heterozygotes for 137Tins, the key SNP of CYP2D6 (*) 15. However, only 15 samples were confirmed when tested with the Luminex xTAG CYP2D6 Kit and sequencing of CYP2D6-specific long range (XL)-PCR products. Genotype and gene resequencing of CYP2D6 and CYP2D7-specific XL-PCR products revealed a CC>GT dinucleotide SNP in exon 1 of CYP2D7 that reverts the sequence to CYP2D6 and allows a TaqMan assay PCR primer to bind. Because CYP2D7 also carries a Tins, a false-positive mutation signal is generated. This CYP2D7 SNP was also responsible for generating false-positive signals for rs769258 (CYP2D6 (*) 35) which is also located in exon 1. Although alternative CYP2D6 (*) 15 and (*) 35 assays resolved the issue, we discovered a novel CYP2D6 (*) 15 subvariant in one sample that carries additional SNPs preventing detection with the alternate assay. The frequency of CYP2D6 (*) 15 was 0.1% in this ethnically diverse U.S. population sample. In addition, we also discovered linkage between the CYP2D7 CC>GT dinucleotide SNP and the 77G>A (rs28371696) SNP of CYP2D6 (*) 43. The frequency of this tentatively functional allele was 0.2%. Taken together, these findings emphasize that regardless of how careful genotyping assays are designed and evaluated before being commercially marketed, rare or unknown SNPs underneath primer

  3. Fast Euler solver for transonic airfoils. I - Theory. II - Applications

    NASA Technical Reports Server (NTRS)

    Dadone, Andrea; Moretti, Gino

    1988-01-01

    Equations written in terms of generalized Riemann variables are presently integrated by inverting six bidiagonal matrices and two tridiagonal matrices, using an implicit Euler solver that is based on the lambda-formulation. The solution is found on a C-grid whose boundaries are very close to the airfoil. The fast solver is then applied to the computation of several flowfields on a NACA 0012 airfoil at various Mach number and alpha values, yielding results that are primarily concerned with transonic flows. The effects of grid fineness and boundary distances are analyzed; the code is found to be robust and accurate, as well as fast.

  4. Numerical System Solver Developed for the National Cycle Program

    NASA Technical Reports Server (NTRS)

    Binder, Michael P.

    1999-01-01

    As part of the National Cycle Program (NCP), a powerful new numerical solver has been developed to support the simulation of aeropropulsion systems. This software uses a hierarchical object-oriented design. It can provide steady-state and time-dependent solutions to nonlinear and even discontinuous problems typically encountered when aircraft and spacecraft propulsion systems are simulated. It also can handle constrained solutions, in which one or more factors may limit the behavior of the engine system. Timedependent simulation capabilities include adaptive time-stepping and synchronization with digital control elements. The NCP solver is playing an important role in making the NCP a flexible, powerful, and reliable simulation package.

  5. An algorithm for computing the 2D structure of fast rotating stars

    NASA Astrophysics Data System (ADS)

    Rieutord, Michel; Espinosa Lara, Francisco; Putigny, Bertrand

    2016-08-01

    Stars may be understood as self-gravitating masses of a compressible fluid whose radiative cooling is compensated by nuclear reactions or gravitational contraction. The understanding of their time evolution requires the use of detailed models that account for a complex microphysics including that of opacities, equation of state and nuclear reactions. The present stellar models are essentially one-dimensional, namely spherically symmetric. However, the interpretation of recent data like the surface abundances of elements or the distribution of internal rotation have reached the limits of validity of one-dimensional models because of their very simplified representation of large-scale fluid flows. In this article, we describe the ESTER code, which is the first code able to compute in a consistent way a two-dimensional model of a fast rotating star including its large-scale flows. Compared to classical 1D stellar evolution codes, many numerical innovations have been introduced to deal with this complex problem. First, the spectral discretization based on spherical harmonics and Chebyshev polynomials is used to represent the 2D axisymmetric fields. A nonlinear mapping maps the spheroidal star and allows a smooth spectral representation of the fields. The properties of Picard and Newton iterations for solving the nonlinear partial differential equations of the problem are discussed. It turns out that the Picard scheme is efficient on the computation of the simple polytropic stars, but Newton algorithm is unsurpassed when stellar models include complex microphysics. Finally, we discuss the numerical efficiency of our solver of Newton iterations. This linear solver combines the iterative Conjugate Gradient Squared algorithm together with an LU-factorization serving as a preconditioner of the Jacobian matrix.

  6. Generation of ion temperature anisotropy in kinetic hybrid-Vlasov simulations (Invited)

    NASA Astrophysics Data System (ADS)

    Perrone, D.; Valentini, F.; Servidio, S.; Dalena, S.; Veltri, P.

    2013-12-01

    The interplanetary medium is a multi-component and weakly collisional system generally observed to be in a fully turbulent regime [1,2]. The system dynamics at short spatial scales appears to be dominated by kinetic effects that drive the interstellar gas far from the configuration of thermodynamic equilibrium [3-5]. We present a numerical analysis of a turbulent plasma composed of kinetic ions (protons and alpha particles) and fluid electrons in the typical conditions of the solar-wind environment, developed by using a low-noise hybrid Vlasov-Maxwell code [6,7] in a five dimensional phase space configuration (two dimensions in physical space and three dimensions in velocity space) [8]. The ion dynamics at short spatial scales (shorter than the proton skin depth) display several interesting aspects, mainly consisting in the departure of the distribution functions from the typical Maxwellian configuration, which has been systematically quantified through the evalutation of the temperature anisotropy ratio (perpendicular to parallel temperature ratio) with respect to the local magnetic field. This temperature anisotropy appears to be a direct effect of the turbulent nature of the system dynamics. Moreover, the turbulent activity leads to the generation of coherent structures, such as vortices and current sheets. Conditioned ion temperature distributions suggest heating associated with coherent structures; the distribution of ion temperatures moves towards higher values with increasing PVI threshold for the upper inertial range in the turbulent spectra. This behavior is more evident for alpha particles than for protons. The physical phenomenology recovered in these numerical simulations reproduces very common features recovered in 'in situ' measurements in the turbulent solar wind [9-11], suggesting that the multi-ion Vlasov model represents a valid approach to the understanding of the nature of complex kinetic effects in astrophysical plasmas. [1] R. Bruno and V

  7. Strichartz Estimates and Moment Bounds for the Relativistic Vlasov-Maxwell System

    NASA Astrophysics Data System (ADS)

    Luk, Jonathan; Strain, Robert M.

    2016-01-01

    We consider the relativistic Vlasov-Maxwell system with data of unrestricted size and without compact support in momentum space. In the two-dimensional and the two-and-a-half-dimensional cases, Glassey-Schaeffer proved (Commun Math Phys 185:257-284, 1997; Arch Ration Mech Anal 141:331-354, 1998; Arch Ration Mech Anal. 141:355-374, 1998) that for regular initial data with compact momentum support this system has unique global in time classical solutions. In this work we do not assume compact momentum support for the initial data and instead require only that the data have polynomial decay in momentum space. In the two-dimensional and the two-and-a-half-dimensional cases, we prove the global existence, uniqueness and regularity for solutions arising from this class of initial data. To this end we use Strichartz estimates and prove that suitable moments of the solution remain bounded. Moreover, we obtain a slight improvement of the temporal growth of the {L^∞_x} norms of the electromagnetic fields compared to Glassey and Schaeffer (Commun Math Phys 185:257-284, 1997; Arch Ration Mech Anal 141:355-374, 1998). In the three-dimensional case, we apply Strichartz estimates and moment bounds to show that a regular solution can be extended as long as {{|p_0^{θ} f |_{LqxL^1p}}} remains bounded for {θ > 2/q}, {2 < q ≤q ∞}. This improves previous results of Pallard (Indiana Univ Math J 54(5):1395-1409, 2005; Commun Math Sci 13(2):347-354, 2015).

  8. Vlasov simulation of the interaction between the solar wind and a dielectric body with magnetic anomaly

    NASA Astrophysics Data System (ADS)

    Ito, Y.; Umeda, T.; Ogino, T.

    2012-12-01

    The interaction of a plasma flow with an unmagnetized object is quite different from that with a magnetized object such as the Earth. Due to the absence of the global magnetic field, the unmagnetized object absorbs plasma particles which reach the surface, generating a plasma cavity called "wake" in the anti-solar side of the object. Since the velocity of the solar wind (SW) is larger than the thermal velocity of ions, ions cannot penetrate into the nightside of the moon. However, ions were observed in the deep wake by a Japanese spacecraft SELENE (KAGUYA) which is orbiting the moon in a polar orbit around 100km altitude. A key mechanism of this phenomenon is thought to be scattering of SW ions at the lunar dayside surface by an interaction between the Interplanetary Magnetic Field (IMF) and a lunar magnetic anomaly. In the present study, we examine entry processes of ions into the wake due to the interaction between IMF and the magnetic anomaly via a full-kinetic Vlasov simulation. There are two processes that the ion entry into the wake. A shock is formed by the interaction between the dipole magnetic field and the SW. A part of SW ions are reflected at the shock and enter the wake due to the ion gyro motion. On the other hand, the electric field toward the body is generated by the negative charge on the nightside surface. SW ions enter the wake due to the out-of-plane magnetic convection induced by the electric field.

  9. Differential CYP 2D6 Metabolism Alters Primaquine Pharmacokinetics

    PubMed Central

    Potter, Brittney M. J.; Xie, Lisa H.; Vuong, Chau; Zhang, Jing; Zhang, Ping; Duan, Dehui; Luong, Thu-Lan T.; Bandara Herath, H. M. T.; Dhammika Nanayakkara, N. P.; Tekwani, Babu L.; Walker, Larry A.; Nolan, Christina K.; Sciotti, Richard J.; Zottig, Victor E.; Smith, Philip L.; Paris, Robert M.; Read, Lisa T.; Li, Qigui; Pybus, Brandon S.; Sousa, Jason C.; Reichard, Gregory A.

    2015-01-01

    Primaquine (PQ) metabolism by the cytochrome P450 (CYP) 2D family of enzymes is required for antimalarial activity in both humans (2D6) and mice (2D). Human CYP 2D6 is highly polymorphic, and decreased CYP 2D6 enzyme activity has been linked to decreased PQ antimalarial activity. Despite the importance of CYP 2D metabolism in PQ efficacy, the exact role that these enzymes play in PQ metabolism and pharmacokinetics has not been extensively studied in vivo. In this study, a series of PQ pharmacokinetic experiments were conducted in mice with differential CYP 2D metabolism characteristics, including wild-type (WT), CYP 2D knockout (KO), and humanized CYP 2D6 (KO/knock-in [KO/KI]) mice. Plasma and liver pharmacokinetic profiles from a single PQ dose (20 mg/kg of body weight) differed significantly among the strains for PQ and carboxy-PQ. Additionally, due to the suspected role of phenolic metabolites in PQ efficacy, these were probed using reference standards. Levels of phenolic metabolites were highest in mice capable of metabolizing CYP 2D6 substrates (WT and KO/KI 2D6 mice). PQ phenolic metabolites were present in different quantities in the two strains, illustrating species-specific differences in PQ metabolism between the human and mouse enzymes. Taking the data together, this report furthers understanding of PQ pharmacokinetics in the context of differential CYP 2D metabolism and has important implications for PQ administration in humans with different levels of CYP 2D6 enzyme activity. PMID:25645856

  10. 2D to 3D to 2D Dimensionality Crossovers in Thin BSCCO Films

    NASA Astrophysics Data System (ADS)

    Williams, Gary A.

    2003-03-01

    With increasing temperature the superfluid fraction in very thin BSCCO films undergoes a series of dimensionality crossovers. At low temperatures the strong anisotropy causes the thermal excitations to be 2D pancake-antipancake pairs in uncoupled layers. At higher temperatures where the c-axis correlation length becomes larger than a layer there is a crossover to 3D vortex loops. These are initially elliptical, but as the 3D Tc is approached they become more circular as the anisotropy scales away, as modeled by Shenoy and Chattopadhyay [1]. Close to Tc when the correlation length becomes comparable to the film thickness there is a further crossover to a 2D Kosterlitz-Thouless transition, with a drop of the superfluid fraction to zero at T_KT which can be of the order of 1 K below T_c. Good agreement with this model is found for experiments on thin BSCCO 2212 films [2]. 1. S. R. Shenoy and B. Chattopadhyay, Phys. Rev. B 51, 9129 (1995). 2. K. Osborn et al., cond-mat/0204417.

  11. Mechanical characterization of 2D, 2D stitched, and 3D braided/RTM materials

    NASA Technical Reports Server (NTRS)

    Deaton, Jerry W.; Kullerd, Susan M.; Portanova, Marc A.

    1993-01-01

    Braided composite materials have potential for application in aircraft structures. Fuselage frames, floor beams, wing spars, and stiffeners are examples where braided composites could find application if cost effective processing and damage tolerance requirements are met. Another important consideration for braided composites relates to their mechanical properties and how they compare to the properties of composites produced by other textile composite processes being proposed for these applications. Unfortunately, mechanical property data for braided composites do not appear extensively in the literature. Data are presented in this paper on the mechanical characterization of 2D triaxial braid, 2D triaxial braid plus stitching, and 3D (through-the-thickness) braid composite materials. The braided preforms all had the same graphite tow size and the same nominal braid architectures, (+/- 30 deg/0 deg), and were resin transfer molded (RTM) using the same mold for each of two different resin systems. Static data are presented for notched and unnotched tension, notched and unnotched compression, and compression after impact strengths at room temperature. In addition, some static results, after environmental conditioning, are included. Baseline tension and compression fatigue results are also presented, but only for the 3D braided composite material with one of the resin systems.

  12. Saturation process induced by vortex-merging in numerical Vlasov-Maxwell experiments of stimulated Raman backscattering

    SciTech Connect

    Albrecht-Marc, M.; Ghizzo, A.; Johnston, T. W.; Reveille, T.; Del Sarto, D.; Bertrand, P.

    2007-07-15

    The influence of low-frequency nonlinear Bernstein-Greene-Kruskal (BGK)-type waves induced by trapped electrons in backward stimulated Raman scattering is investigated in optical mixing. Semi-Lagrangian Vlasov-Maxwell simulations show two nonlinear behaviors. First, there is a Morales-O'Neil plasma wave frequency downshift retuned by a small wavenumber shift which maintains the Stimulated Raman Scattering (SRS) resonance. The saturation of Raman backscattering begins with phase space vortex merging followed by a transition to lower wavenumbers following the (nonlinear) dispersion relation, resembling weak turbulence.

  13. Particle paths and phase plane for time-dependent similarity solutions of the one-dimensional Vlasov-Maxwell equations

    NASA Technical Reports Server (NTRS)

    Roberts, Dana Aaron; Abraham-Shrauner, Barbara

    1987-01-01

    The phase trajectories of particles in a plasma described by the one-dimensional Vlasov-Maxwell equations are determined qualitatively, analyzing exact general similarity solutions for the cases of temporally damped and growing (sinusoidal or localized) electric fields. The results of numerical integration in both untransformed and Lie-group point-transformed coordinates are presented in extensive graphs and characterized in detail. The implications of the present analysis for the stability of BGK equilibria are explored, and the existence of nonlinear solutions arbitrarily close to and significantly different from the BGK solutions is demonstrated.

  14. Assessment of Linear Finite-Difference Poisson-Boltzmann Solvers

    PubMed Central

    Wang, Jun; Luo, Ray

    2009-01-01

    CPU time and memory usage are two vital issues that any numerical solvers for the Poisson-Boltzmann equation have to face in biomolecular applications. In this study we systematically analyzed the CPU time and memory usage of five commonly used finite-difference solvers with a large and diversified set of biomolecular structures. Our comparative analysis shows that modified incomplete Cholesky conjugate gradient and geometric multigrid are the most efficient in the diversified test set. For the two efficient solvers, our test shows that their CPU times increase approximately linearly with the numbers of grids. Their CPU times also increase almost linearly with the negative logarithm of the convergence criterion at very similar rate. Our comparison further shows that geometric multigrid performs better in the large set of tested biomolecules. However, modified incomplete Cholesky conjugate gradient is superior to geometric multigrid in molecular dynamics simulations of tested molecules. We also investigated other significant components in numerical solutions of the Poisson-Boltzmann equation. It turns out that the time-limiting step is the free boundary condition setup for the linear systems for the selected proteins if the electrostatic focusing is not used. Thus, development of future numerical solvers for the Poisson-Boltzmann equation should balance all aspects of the numerical procedures in realistic biomolecular applications. PMID:20063271

  15. Navier-Stokes Solvers and Generalizations for Reacting Flow Problems

    SciTech Connect

    Elman, Howard C

    2013-01-27

    This is an overview of our accomplishments during the final term of this grant (1 September 2008 -- 30 June 2012). These fall mainly into three categories: fast algorithms for linear eigenvalue problems; solution algorithms and modeling methods for partial differential equations with uncertain coefficients; and preconditioning methods and solvers for models of computational fluid dynamics (CFD).

  16. Assessment of linear finite-difference Poisson-Boltzmann solvers.

    PubMed

    Wang, Jun; Luo, Ray

    2010-06-01

    CPU time and memory usage are two vital issues that any numerical solvers for the Poisson-Boltzmann equation have to face in biomolecular applications. In this study, we systematically analyzed the CPU time and memory usage of five commonly used finite-difference solvers with a large and diversified set of biomolecular structures. Our comparative analysis shows that modified incomplete Cholesky conjugate gradient and geometric multigrid are the most efficient in the diversified test set. For the two efficient solvers, our test shows that their CPU times increase approximately linearly with the numbers of grids. Their CPU times also increase almost linearly with the negative logarithm of the convergence criterion at very similar rate. Our comparison further shows that geometric multigrid performs better in the large set of tested biomolecules. However, modified incomplete Cholesky conjugate gradient is superior to geometric multigrid in molecular dynamics simulations of tested molecules. We also investigated other significant components in numerical solutions of the Poisson-Boltzmann equation. It turns out that the time-limiting step is the free boundary condition setup for the linear systems for the selected proteins if the electrostatic focusing is not used. Thus, development of future numerical solvers for the Poisson-Boltzmann equation should balance all aspects of the numerical procedures in realistic biomolecular applications. PMID:20063271

  17. Advances in computational fluid dynamics solvers for modern computing environments

    NASA Astrophysics Data System (ADS)

    Hertenstein, Daniel; Humphrey, John R.; Paolini, Aaron L.; Kelmelis, Eric J.

    2013-05-01

    EM Photonics has been investigating the application of massively multicore processors to a key problem area: Computational Fluid Dynamics (CFD). While the capabilities of CFD solvers have continually increased and improved to support features such as moving bodies and adjoint-based mesh adaptation, the software architecture has often lagged behind. This has led to poor scaling as core counts reach the tens of thousands. In the modern High Performance Computing (HPC) world, clusters with hundreds of thousands of cores are becoming the standard. In addition, accelerator devices such as NVIDIA GPUs and Intel Xeon Phi are being installed in many new systems. It is important for CFD solvers to take advantage of the new hardware as the computations involved are well suited for the massively multicore architecture. In our work, we demonstrate that new features in NVIDIA GPUs are able to empower existing CFD solvers by example using AVUS, a CFD solver developed by the Air Force Research Labratory (AFRL) and the Volcanic Ash Advisory Center (VAAC). The effort has resulted in increased performance and scalability without sacrificing accuracy. There are many well-known codes in the CFD space that can benefit from this work, such as FUN3D, OVERFLOW, and TetrUSS. Such codes are widely used in the commercial, government, and defense sectors.

  18. Coordinate Projection-based Solver for ODE with Invariants

    SciTech Connect

    Serban, Radu

    2008-04-08

    CPODES is a general purpose (serial and parallel) solver for systems of ordinary differential equation (ODE) with invariants. It implements a coordinate projection approach using different types of projection (orthogonal or oblique) and one of several methods for the decompositon of the Jacobian of the invariant equations.

  19. Intellectual Abilities That Discriminate Good and Poor Problem Solvers.

    ERIC Educational Resources Information Center

    Meyer, Ruth Ann

    1981-01-01

    This study compared good and poor fourth-grade problem solvers on a battery of 19 "reference" tests for verbal, induction, numerical, word fluency, memory, perceptual speed, and simple visualization abilities. Results suggest verbal, numerical, and especially induction abilities are important to successful mathematical problem solving. (MP)

  20. Differential Cytochrome P450 2D Metabolism Alters Tafenoquine Pharmacokinetics

    PubMed Central

    Vuong, Chau; Xie, Lisa H.; Potter, Brittney M. J.; Zhang, Jing; Zhang, Ping; Duan, Dehui; Nolan, Christina K.; Sciotti, Richard J.; Zottig, Victor E.; Nanayakkara, N. P. Dhammika; Tekwani, Babu L.; Walker, Larry A.; Smith, Philip L.; Paris, Robert M.; Read, Lisa T.; Li, Qigui; Pybus, Brandon S.; Sousa, Jason C.; Reichard, Gregory A.; Smith, Bryan

    2015-01-01

    Cytochrome P450 (CYP) 2D metabolism is required for the liver-stage antimalarial efficacy of the 8-aminoquinoline molecule tafenoquine in mice. This could be problematic for Plasmodium vivax radical cure, as the human CYP 2D ortholog (2D6) is highly polymorphic. Diminished CYP 2D6 enzyme activity, as in the poor-metabolizer phenotype, could compromise radical curative efficacy in humans. Despite the importance of CYP 2D metabolism for tafenoquine liver-stage efficacy, the exact role that CYP 2D metabolism plays in the metabolism and pharmacokinetics of tafenoquine and other 8-aminoquinoline molecules has not been extensively studied. In this study, a series of tafenoquine pharmacokinetic experiments were conducted in mice with different CYP 2D metabolism statuses, including wild-type (WT) (reflecting extensive metabolizers for CYP 2D6 substrates) and CYPmouse 2D knockout (KO) (reflecting poor metabolizers for CYP 2D6 substrates) mice. Plasma and liver pharmacokinetic profiles from a single 20-mg/kg of body weight dose of tafenoquine differed between the strains; however, the differences were less striking than previous results obtained for primaquine in the same model. Additionally, the presence of a 5,6-ortho-quinone tafenoquine metabolite was examined in both mouse strains. The 5,6-ortho-quinone species of tafenoquine was observed, and concentrations of the metabolite were highest in the WT extensive-metabolizer phenotype. Altogether, this study indicates that CYP 2D metabolism in mice affects tafenoquine pharmacokinetics and could have implications for human tafenoquine pharmacokinetics in polymorphic CYP 2D6 human populations. PMID:25870069

  1. Multiscale Universal Interface: A concurrent framework for coupling heterogeneous solvers

    SciTech Connect

    Tang, Yu-Hang; Kudo, Shuhei; Bian, Xin; Li, Zhen; Karniadakis, George Em

    2015-09-15

    Graphical abstract: - Abstract: Concurrently coupled numerical simulations using heterogeneous solvers are powerful tools for modeling multiscale phenomena. However, major modifications to existing codes are often required to enable such simulations, posing significant difficulties in practice. In this paper we present a C++ library, i.e. the Multiscale Universal Interface (MUI), which is capable of facilitating the coupling effort for a wide range of multiscale simulations. The library adopts a header-only form with minimal external dependency and hence can be easily dropped into existing codes. A data sampler concept is introduced, combined with a hybrid dynamic/static typing mechanism, to create an easily customizable framework for solver-independent data interpretation. The library integrates MPI MPMD support and an asynchronous communication protocol to handle inter-solver information exchange irrespective of the solvers' own MPI awareness. Template metaprogramming is heavily employed to simultaneously improve runtime performance and code flexibility. We validated the library by solving three different multiscale problems, which also serve to demonstrate the flexibility of the framework in handling heterogeneous models and solvers. In the first example, a Couette flow was simulated using two concurrently coupled Smoothed Particle Hydrodynamics (SPH) simulations of different spatial resolutions. In the second example, we coupled the deterministic SPH method with the stochastic Dissipative Particle Dynamics (DPD) method to study the effect of surface grafting on the hydrodynamics properties on the surface. In the third example, we consider conjugate heat transfer between a solid domain and a fluid domain by coupling the particle-based energy-conserving DPD (eDPD) method with the Finite Element Method (FEM)

  2. Decision Engines for Software Analysis Using Satisfiability Modulo Theories Solvers

    NASA Technical Reports Server (NTRS)

    Bjorner, Nikolaj

    2010-01-01

    The area of software analysis, testing and verification is now undergoing a revolution thanks to the use of automated and scalable support for logical methods. A well-recognized premise is that at the core of software analysis engines is invariably a component using logical formulas for describing states and transformations between system states. The process of using this information for discovering and checking program properties (including such important properties as safety and security) amounts to automatic theorem proving. In particular, theorem provers that directly support common software constructs offer a compelling basis. Such provers are commonly called satisfiability modulo theories (SMT) solvers. Z3 is a state-of-the-art SMT solver. It is developed at Microsoft Research. It can be used to check the satisfiability of logical formulas over one or more theories such as arithmetic, bit-vectors, lists, records and arrays. The talk describes some of the technology behind modern SMT solvers, including the solver Z3. Z3 is currently mainly targeted at solving problems that arise in software analysis and verification. It has been applied to various contexts, such as systems for dynamic symbolic simulation (Pex, SAGE, Vigilante), for program verification and extended static checking (Spec#/Boggie, VCC, HAVOC), for software model checking (Yogi, SLAM), model-based design (FORMULA), security protocol code (F7), program run-time analysis and invariant generation (VS3). We will describe how it integrates support for a variety of theories that arise naturally in the context of the applications. There are several new promising avenues and the talk will touch on some of these and the challenges related to SMT solvers. Proceedings

  3. Migration of vectorized iterative solvers to distributed memory architectures

    SciTech Connect

    Pommerell, C.; Ruehl, R.

    1994-12-31

    Both necessity and opportunity motivate the use of high-performance computers for iterative linear solvers. Necessity results from the size of the problems being solved-smaller problems are often better handled by direct methods. Opportunity arises from the formulation of the iterative methods in terms of simple linear algebra operations, even if this {open_quote}natural{close_quotes} parallelism is not easy to exploit in irregularly structured sparse matrices and with good preconditioners. As a result, high-performance implementations of iterative solvers have attracted a lot of interest in recent years. Most efforts are geared to vectorize or parallelize the dominating operation-structured or unstructured sparse matrix-vector multiplication, or to increase locality and parallelism by reformulating the algorithm-reducing global synchronization in inner products or local data exchange in preconditioners. Target architectures for iterative solvers currently include mostly vector supercomputers and architectures with one or few optimized (e.g., super-scalar and/or super-pipelined RISC) processors and hierarchical memory systems. More recently, parallel computers with physically distributed memory and a better price/performance ratio have been offered by vendors as a very interesting alternative to vector supercomputers. However, programming comfort on such distributed memory parallel processors (DMPPs) still lags behind. Here the authors are concerned with iterative solvers and their changing computing environment. In particular, they are considering migration from traditional vector supercomputers to DMPPs. Application requirements force one to use flexible and portable libraries. They want to extend the portability of iterative solvers rather than reimplementing everything for each new machine, or even for each new architecture.

  4. Multiscale Universal Interface: A concurrent framework for coupling heterogeneous solvers

    NASA Astrophysics Data System (ADS)

    Tang, Yu-Hang; Kudo, Shuhei; Bian, Xin; Li, Zhen; Karniadakis, George Em

    2015-09-01

    Concurrently coupled numerical simulations using heterogeneous solvers are powerful tools for modeling multiscale phenomena. However, major modifications to existing codes are often required to enable such simulations, posing significant difficulties in practice. In this paper we present a C++ library, i.e. the Multiscale Universal Interface (MUI), which is capable of facilitating the coupling effort for a wide range of multiscale simulations. The library adopts a header-only form with minimal external dependency and hence can be easily dropped into existing codes. A data sampler concept is introduced, combined with a hybrid dynamic/static typing mechanism, to create an easily customizable framework for solver-independent data interpretation. The library integrates MPI MPMD support and an asynchronous communication protocol to handle inter-solver information exchange irrespective of the solvers' own MPI awareness. Template metaprogramming is heavily employed to simultaneously improve runtime performance and code flexibility. We validated the library by solving three different multiscale problems, which also serve to demonstrate the flexibility of the framework in handling heterogeneous models and solvers. In the first example, a Couette flow was simulated using two concurrently coupled Smoothed Particle Hydrodynamics (SPH) simulations of different spatial resolutions. In the second example, we coupled the deterministic SPH method with the stochastic Dissipative Particle Dynamics (DPD) method to study the effect of surface grafting on the hydrodynamics properties on the surface. In the third example, we consider conjugate heat transfer between a solid domain and a fluid domain by coupling the particle-based energy-conserving DPD (eDPD) method with the Finite Element Method (FEM).

  5. A Geometric Boolean Library for 2D Objects

    2006-01-05

    The 2D Boolean Library is a collection of C++ classes -- which primarily represent 2D geometric data and relationships, and routines -- which contain algorithms for 2D geometric Boolean operations and utility functions. Classes are provided for 2D points, lines, arcs, edgeuses, loops, surfaces and mask sets. Routines are provided that incorporate the Boolean operations Union(OR), XOR, Intersection and Difference. Various analytical geometry routines and routines for importing and exporting the data in various filemore » formats, are also provided in the library.« less

  6. A Geometric Boolean Library for 2D Objects

    SciTech Connect

    McBride, Corey L.; Yarberry, Victor; Jorgensen, Craig

    2006-01-05

    The 2D Boolean Library is a collection of C++ classes -- which primarily represent 2D geometric data and relationships, and routines -- which contain algorithms for 2D geometric Boolean operations and utility functions. Classes are provided for 2D points, lines, arcs, edgeuses, loops, surfaces and mask sets. Routines are provided that incorporate the Boolean operations Union(OR), XOR, Intersection and Difference. Various analytical geometry routines and routines for importing and exporting the data in various file formats, are also provided in the library.

  7. Linear stability analysis of the Vlasov-Poisson equations in high density plasmas in the presence of crossed fields and density gradients

    NASA Technical Reports Server (NTRS)

    Kaup, D. J.; Hansen, P. J.; Choudhury, S. Roy; Thomas, Gary E.

    1986-01-01

    The equations for the single-particle orbits in a nonneutral high density plasma in the presence of inhomogeneous crossed fields are obtained. Using these orbits, the linearized Vlasov equation is solved as an expansion in the orbital radii in the presence of inhomogeneities and density gradients. A model distribution function is introduced whose cold-fluid limit is exactly the same as that used in many previous studies of the cold-fluid equations. This model function is used to reduce the linearized Vlasov-Poisson equations to a second-order ordinary differential equation for the linearized electrostatic potential whose eigenvalue is the perturbation frequency.

  8. AnisWave2D: User's Guide to the 2d Anisotropic Finite-DifferenceCode

    SciTech Connect

    Toomey, Aoife

    2005-01-06

    This document describes a parallel finite-difference code for modeling wave propagation in 2D, fully anisotropic materials. The code utilizes a mesh refinement scheme to improve computational efficiency. Mesh refinement allows the grid spacing to be tailored to the velocity model, so that fine grid spacing can be used in low velocity zones where the seismic wavelength is short, and coarse grid spacing can be used in zones with higher material velocities. Over-sampling of the seismic wavefield in high velocity zones is therefore avoided. The code has been implemented to run in parallel over multiple processors and allows large-scale models and models with large velocity contrasts to be simulated with ease.

  9. Klassifikation von Standardebenen in der 2D-Echokardiographie mittels 2D-3D-Bildregistrierung

    NASA Astrophysics Data System (ADS)

    Bergmeir, Christoph; Subramanian, Navneeth

    Zum Zweck der Entwicklung eines Systems, das einen unerfahrenen Anwender von Ultraschall (US) zur Aufnahme relevanter anatomischer Strukturen leitet, untersuchen wir die Machbarkeit von 2D-US zu 3D-CT Registrierung. Wir verwenden US-Aufnahmen von Standardebenen des Herzens, welche zu einem 3D-CT-Modell registriert werden. Unser Algorithmus unterzieht sowohl die US-Bilder als auch den CT-Datensatz Vorverarbeitungsschritten, welche die Daten durch Segmentierung auf wesentliche Informationen in Form von Labein für Muskel und Blut reduzieren. Anschließend werden diese Label zur Registrierung mittels der Match-Cardinality-Metrik genutzt. Durch mehrmaliges Registrieren mit verschiedenen Initialisierungen ermitteln wir die im US-Bild sichtbare Standardebene. Wir evaluierten die Methode auf sieben US-Bildern von Standardebenen. Fünf davon wurden korrekt zugeordnet.

  10. Efficient three-dimensional Poisson solvers in open rectangular conducting pipe

    NASA Astrophysics Data System (ADS)

    Qiang, Ji

    2016-06-01

    Three-dimensional (3D) Poisson solver plays an important role in the study of space-charge effects on charged particle beam dynamics in particle accelerators. In this paper, we propose three new 3D Poisson solvers for a charged particle beam in an open rectangular conducting pipe. These three solvers include a spectral integrated Green function (IGF) solver, a 3D spectral solver, and a 3D integrated Green function solver. These solvers effectively handle the longitudinal open boundary condition using a finite computational domain that contains the beam itself. This saves the computational cost of using an extra larger longitudinal domain in order to set up an appropriate finite boundary condition. Using an integrated Green function also avoids the need to resolve rapid variation of the Green function inside the beam. The numerical operational cost of the spectral IGF solver and the 3D IGF solver scales as O(N log(N)) , where N is the number of grid points. The cost of the 3D spectral solver scales as O(Nn N) , where Nn is the maximum longitudinal mode number. We compare these three solvers using several numerical examples and discuss the advantageous regime of each solver in the physical application.

  11. ICEG2D (v2.0) - An Integrated Software Package for Automated Prediction of Flow Fields for Single-Element Airfoils With Ice Accretion

    NASA Technical Reports Server (NTRS)

    Thompson David S.; Soni, Bharat K.

    2001-01-01

    An integrated geometry/grid/simulation software package, ICEG2D, is being developed to automate computational fluid dynamics (CFD) simulations for single- and multi-element airfoils with ice accretions. The current version, ICEG213 (v2.0), was designed to automatically perform four primary functions: (1) generate a grid-ready surface definition based on the geometrical characteristics of the iced airfoil surface, (2) generate high-quality structured and generalized grids starting from a defined surface definition, (3) generate the input and restart files needed to run the structured grid CFD solver NPARC or the generalized grid CFD solver HYBFL2D, and (4) using the flow solutions, generate solution-adaptive grids. ICEG2D (v2.0) can be operated in either a batch mode using a script file or in an interactive mode by entering directives from a command line within a Unix shell. This report summarizes activities completed in the first two years of a three-year research and development program to address automation issues related to CFD simulations for airfoils with ice accretions. As well as describing the technology employed in the software, this document serves as a users manual providing installation and operating instructions. An evaluation of the software is also presented.

  12. Functional characterization of CYP2D6 enhancer polymorphisms

    PubMed Central

    Wang, Danxin; Papp, Audrey C.; Sun, Xiaochun

    2015-01-01

    CYP2D6 metabolizes nearly 25% of clinically used drugs. Genetic polymorphisms cause large inter-individual variability in CYP2D6 enzyme activity and are currently used as biomarker to predict CYP2D6 metabolizer phenotype. Previously, we had identified a region 115 kb downstream of CYP2D6 as enhancer for CYP2D6, containing two completely linked single nucleotide polymorphisms (SNPs), rs133333 and rs5758550, associated with enhanced transcription. However, the enhancer effect on CYP2D6 expression, and the causative variant, remained to be ascertained. To characterize the CYP2D6 enhancer element, we applied chromatin conformation capture combined with the next-generation sequencing (4C assays) and chromatin immunoprecipitation with P300 antibody, in HepG2 and human primary culture hepatocytes. The results confirmed the role of the previously identified enhancer region in CYP2D6 expression, expanding the number of candidate variants to three highly linked SNPs (rs133333, rs5758550 and rs4822082). Among these, only rs5758550 demonstrated regulating enhancer activity in a reporter gene assay. Use of clustered regularly interspaced short palindromic repeats mediated genome editing in HepG2 cells targeting suspected enhancer regions decreased CYP2D6 mRNA expression by 70%, only upon deletion of the rs5758550 region. These results demonstrate robust effects of both the enhancer element and SNP rs5758550 on CYP2D6 expression, supporting consideration of rs5758550 for CYP2D6 genotyping panels to yield more accurate phenotype prediction. PMID:25381333

  13. Thermal stability effects on the separated flow over a steep 2-D hill

    NASA Astrophysics Data System (ADS)

    Zhang, W.; Porte-Agel, F.

    2012-12-01

    Transport of momentum and scalars in turbulent boundary-layer flows over complex topography has been of great interest in the atmospheric sciences and wind engineering communities. Applications include but are not limited to weather forecasting, air pollution dispersion, aviation safety control, and wind energy project planning. Linear models have been well accepted to predict boundary-layer flows over topography with gentle slope. However, once the slope of the topography is sufficientlyo steep that flow separation occurs, linear models are not applicable. Modeling the turbulent transport of momentum and scalars in such flows has to be achieved through non-linear models, such as Reynolds-averaged Navier-Stokes solvers and large-eddy simulations (LES). Dynamics of the separated boundary-layer flows over steep topography is affected by the shape and size of the topography, surface characteristics (e.g., roughness and temperature) and atmospheric thermal stability. Most wind-tunnel experiments of boundary-layer flows over idealized topography (e.g. 2-D or 3-D hills, axisymmetric bumps) do not take thermal stability effects into account due to difficulty of physical simulation. We conducted comprehensive experimental investigation of stably- and unstably- stratified boundary layers over a steep 2-D hill in the thermally-controlled boundary-layer wind tunnel at the Saint Anthony Falls Laboratory. The 2-D model hill has a steepest slope of 0.73 and its shape follows a cosine square function: h=Hcos^2 (πx/L) for -L/2 ≤ x ≤ L/2 , where the maximum height H is 7 cm and the total width L is 15 cm. High-resolution Particle Image Velocimetry (PIV) provides dynamic information of the separated shear layer, the recirculation zone and flow reattachment. Turbulent momentum and scalar (heat) fluxes were characterized up to the top of the thermal boundary layer using a triple-wire (cross-wire and cold-wire) anemometer. Results indicate that promoted and suppressed turbulence

  14. An Incompressible 2D Didactic Model with Singularity and Explicit Solutions of the 2D Boussinesq Equations

    NASA Astrophysics Data System (ADS)

    Chae, Dongho; Constantin, Peter; Wu, Jiahong

    2014-09-01

    We give an example of a well posed, finite energy, 2D incompressible active scalar equation with the same scaling as the surface quasi-geostrophic equation and prove that it can produce finite time singularities. In spite of its simplicity, this seems to be the first such example. Further, we construct explicit solutions of the 2D Boussinesq equations whose gradients grow exponentially in time for all time. In addition, we introduce a variant of the 2D Boussinesq equations which is perhaps a more faithful companion of the 3D axisymmetric Euler equations than the usual 2D Boussinesq equations.

  15. Generation of initial Vlasov distributions for simulation of charged particle beams with high space-charge intensity

    SciTech Connect

    Lund, S M; Kikuchi, T; Davidson, R C

    2007-04-12

    Self-consistent Vlasov simulations of beams with high space-charge intensity often require specification of initial phase-space distributions that reflect properties of a beam that is well adapted to the transport channel, both in terms of low-order rms (envelope) properties as well as the higher-order phase-space structure. Here, we first review broad classes of distributions commonly in use as initial Vlasov distributions in simulations of beams with intense space-charge fields including: the Kapchinskij-Vladimirskij (KV) equilibrium, continuous-focusing equilibria with specific detailed examples, and various non-equilibrium distributions, such as the semi-Gaussian distribution and distributions formed from specified functions of linear-field Courant-Snyder invariants. Important practical details necessary to specify these distributions in terms of usual accelerator inputs are presented in a unified format. Building on this presentation, a new class of approximate initial distributions are constructed using transformations that preserve linear-focusing single-particle Courant-Snyder invariants to map initial continuous-focusing equilibrium distributions to a form more appropriate for non-continuous focusing channels. Self-consistent particle-in-cell simulations are employed to show that the approximate initial distributions generated in this manner are better adapted to the focusing channels for beams with high space-charge intensity. This improved capability enables simulation applications that more precisely probe intrinsic stability properties and machine performance.

  16. Monte Carlo particle-in-cell methods for the simulation of the Vlasov-Maxwell gyrokinetic equations

    NASA Astrophysics Data System (ADS)

    Bottino, A.; Sonnendrücker, E.

    2015-10-01

    > The particle-in-cell (PIC) algorithm is the most popular method for the discretisation of the general 6D Vlasov-Maxwell problem and it is widely used also for the simulation of the 5D gyrokinetic equations. The method consists of coupling a particle-based algorithm for the Vlasov equation with a grid-based method for the computation of the self-consistent electromagnetic fields. In this review we derive a Monte Carlo PIC finite-element model starting from a gyrokinetic discrete Lagrangian. The variations of the Lagrangian are used to obtain the time-continuous equations of motion for the particles and the finite-element approximation of the field equations. The Noether theorem for the semi-discretised system implies a certain number of conservation properties for the final set of equations. Moreover, the PIC method can be interpreted as a probabilistic Monte Carlo like method, consisting of calculating integrals of the continuous distribution function using a finite set of discrete markers. The nonlinear interactions along with numerical errors introduce random effects after some time. Therefore, the same tools for error analysis and error reduction used in Monte Carlo numerical methods can be applied to PIC simulations.

  17. Hamiltonian structure of the Vlasov-Einstein system and the problem of stability for spherical relativistic star clusters

    SciTech Connect

    Kandrup, H.E.; Morrison, P.J.

    1992-11-01

    The Hamiltonian formulation of the Vlasov-Einstein system, which is appropriate for collisionless, self-gravitating systems like clusters of stars that are so dense that gravity must be described by the Einstein equation, is presented. In particular, it is demonstrated explicitly in the context of a 3 + 1 splitting that, for spherically symmetric configurations, the Vlasov-Einstein system can be viewed as a Hamiltonian system, where the dynamics is generated by a noncanonical Poisson bracket, with the Hamiltonian generating the evolution of the distribution function f (a noncanonical variable) being the conserved ADM mass-energy H{sub ADM}. An explicit expression is derived for the energy {delta}({sup 2})H{sub ADM} associated with an arbitrary phase space preserving perturbation of an arbitrary spherical equilibrium, and it is shown that the equilibrium must be linearly stable if {delta}({sup 2})H{sub ADM} is positive semi-definite. Insight into the Hamiltonian reformulation is provided by a description of general finite degree of freedom systems.

  18. Hamiltonian structure of the Vlasov-Einstein system and the problem of stability for spherical relativistic star clusters

    SciTech Connect

    Kandrup, H.E. ); Morrison, P.J. . Inst. for Fusion Studies)

    1992-11-01

    The Hamiltonian formulation of the Vlasov-Einstein system, which is appropriate for collisionless, self-gravitating systems like clusters of stars that are so dense that gravity must be described by the Einstein equation, is presented. In particular, it is demonstrated explicitly in the context of a 3 + 1 splitting that, for spherically symmetric configurations, the Vlasov-Einstein system can be viewed as a Hamiltonian system, where the dynamics is generated by a noncanonical Poisson bracket, with the Hamiltonian generating the evolution of the distribution function f (a noncanonical variable) being the conserved ADM mass-energy H[sub ADM]. An explicit expression is derived for the energy [delta]([sup 2])H[sub ADM] associated with an arbitrary phase space preserving perturbation of an arbitrary spherical equilibrium, and it is shown that the equilibrium must be linearly stable if [delta]([sup 2])H[sub ADM] is positive semi-definite. Insight into the Hamiltonian reformulation is provided by a description of general finite degree of freedom systems.

  19. Global Classical Solutions of the Relativistic Vlasov-Darwin System with Small Cauchy Data: The Generalized Variables Approach

    NASA Astrophysics Data System (ADS)

    Sospedra-Alfonso, Reinel; Agueh, Martial; Illner, Reinhard

    2012-09-01

    We show that a smooth, small enough Cauchy datum launches a unique classical solution of the relativistic Vlasov-Darwin (RVD) system globally in time. A similar result is claimed in Seehafer (Commun Math Sci 6:749-769, 2008) following the work in Pallard (Int Mat Res Not 57191:1-31, 2006). Our proof does not require estimates derived from the conservation of the total energy, nor those previously given on the transversal component of the electric field. These estimates are crucial in the references cited above. Instead, we exploit the formulation of the RVD system in terms of the generalized space and momentum variables. By doing so, we produce a simple a priori estimate on the transversal component of the electric field. We widen the functional space required for the Cauchy datum to extend the solution globally in time, and we improve decay estimates given in Seehafer (2008) on the electromagnetic field and its space derivatives. Our method extends the constructive proof presented in Rein (Handbook of differential equations: evolutionary equations, vol 3. Elsevier, Amsterdam, 2007) to solve the Cauchy problem for the Vlasov-Poisson system with a small initial datum.

  20. Wigner transformation in curved space-time and the curvature correction of the Vlasov equation for semiclassical gravitating systems

    NASA Astrophysics Data System (ADS)

    Winter, J.

    1985-10-01

    A covariant generalization of the Wigner transformation of quantum equations is proposed for gravitating many-particle systems, which modifies the Einstein-Liouville equations for the coupled gravity-matter problem by inclusion of quantum effects of the matter moving in its self-consistent classical gravitational field, in order to extend their realm of validity to higher particle densities. The corrections of the Vlasov equation (Liouville equation in one-particle phase space) are exhibited as combined effects of quantum mechanics and the curvature of space-time arranged in a semiclassical expansion in powers of ħ2, the first-order term of which is explicitly calculated. It is linear in the Riemann tensor and in its gradient; the Riemann tensor occurs in a similar position as the tensor of the Yang-Mills field strength in a corresponding Vlasov equation for systems with local gauge invariance in the purely classical limit. The performance of the Wigner transformation is based on expressing the equation of motion for the two-point function of the Klein-Gordon field, in particular the Beltrami operator, in terms of a midpoint and a distance vector covariantly defined for the two points. This implies the calculation of deviations of the geodesic between these points, the standard concept of which has to be refined to include infinitesimal variations of the second order. A differential equation for the second-order deviation is established.

  1. New Insight into Short-Wavelength Solar Wind Fluctuations from Vlasov Theory

    NASA Technical Reports Server (NTRS)

    Sahraoui, Fouad; Belmont, G.; Goldstein, M. L.

    2012-01-01

    The nature of solar wind (SW) turbulence below the proton gyroscale is a topic that is being investigated extensively nowadays, both theoretically and observationally. Although recent observations gave evidence of the dominance of kinetic Alfven waves (KAWs) at sub-ion scales with omega < omega(sub ci), other studies suggest that the KAW mode cannot carry the turbulence cascade down to electron scales and that the whistler mode (i.e., omega > omega (sub ci)) is more relevant. Here, we study key properties of the short-wavelength plasma modes under limited, but realistic, SW conditions, Typically Beta(sub i) approx. > Beta (sub e) 1 and for high oblique angles of propagation 80 deg <= Theta (sub kB) < 90 deg as observed from the Cluster spacecraft data. The linear properties of the plasma modes under these conditions are poorly known, which contrasts with the well-documented cold plasma limit and/or moderate oblique angles of propagation (Theta (sub kB) < 80 deg). Based on linear solutions of the Vlasov kinetic theory, we discuss the relevance of each plasma mode (fast, Bernstein, KAW, whistler) in carrying the energy cascade down to electron scales. We show, in particular, that the shear Alfven mode (known in the magnetohydrodynamic limit) extends at scales kappa rho (sub i) approx. > 1 to frequencies either larger or smaller than omega (sub ci), depending on the anisotropy kappa (parallel )/ kappa(perpendicular). This extension into small scales is more readily called whistler (omega > omega (sub ci)) or KAW (omega < omega (sub ci)) although the mode is essentially the same. This contrasts with the well-accepted idea that the whistler branch always develops as a continuation at high frequencies of the fast magnetosonic mode. We show, furthermore, that the whistler branch is more damped than the KAW one, which makes the latter the more relevant candidate to carry the energy cascade down to electron scales. We discuss how these new findings may facilitate resolution

  2. NEW INSIGHT INTO SHORT-WAVELENGTH SOLAR WIND FLUCTUATIONS FROM VLASOV THEORY

    SciTech Connect

    Sahraoui, F.; Belmont, G.; Goldstein, M. L.

    2012-04-01

    The nature of solar wind (SW) turbulence below the proton gyroscale is a topic that is being investigated extensively nowadays, both theoretically and observationally. Although recent observations gave evidence of the dominance of kinetic Alfven waves (KAWs) at sub-ion scales with {omega} < {omega}{sub ci}, other studies suggest that the KAW mode cannot carry the turbulence cascade down to electron scales and that the whistler mode (i.e., {omega} > {omega}{sub ci}) is more relevant. Here, we study key properties of the short-wavelength plasma modes under limited, but realistic, SW conditions, typically {beta}{sub i} {approx}> {beta}{sub e} {approx} 1 and for high oblique angles of propagation 80 Degree-Sign {<=} {Theta}{sub kB} < 90 Degree-Sign as observed from the Cluster spacecraft data. The linear properties of the plasma modes under these conditions are poorly known, which contrasts with the well-documented cold plasma limit and/or moderate oblique angles of propagation ({Theta}{sub kB} < 80 Degree-Sign ). Based on linear solutions of the Vlasov kinetic theory, we discuss the relevance of each plasma mode (fast, Bernstein, KAW, whistler) in carrying the energy cascade down to electron scales. We show, in particular, that the shear Alfven mode (known in the magnetohydrodynamic limit) extends at scales k{rho}{sub i} {approx}> 1 to frequencies either larger or smaller than {omega}{sub ci}, depending on the anisotropy k{sub ||}/k . This extension into small scales is more readily called whistler ({omega} > {omega}{sub ci}) or KAW ({omega} < {omega}{sub ci}), although the mode is essentially the same. This contrasts with the well-accepted idea that the whistler branch always develops as a continuation at high frequencies of the fast magnetosonic mode. We show, furthermore, that the whistler branch is more damped than the KAW one, which makes the latter the more relevant candidate to carry the energy cascade down to electron scales. We discuss how these new findings

  3. Destabilization of 2D magnetic current sheets by resonance with bouncing electron - a new theory

    NASA Astrophysics Data System (ADS)

    Fruit, Gabriel; Louarn, Philippe; Tur, Anatoly

    2016-07-01

    In the general context of understanding the possible destabilization of the magnetotail before a substorm, we propose a kinetic model for electromagnetic instabilities in resonant interaction with trapped bouncing electrons. The geometry is clearly 2D and uses Harris sheet profile. Fruit et al. 2013 already used this model to investigate the possibilities of electrostatic instabilities. Tur et al. 2014 generalizes the model for full electromagnetic perturbations. Starting with a modified Harris sheet as equilibrium state, the linearized gyrokinetic Vlasov equation is solved for electromagnetic fluctuations with period of the order of the electron bounce period (a few seconds). The particle motion is restricted to its first Fourier component along the magnetic field and this allows the complete time integration of the non local perturbed distribution functions. The dispersion relation for electromagnetic modes is finally obtained through the quasi neutrality condition and the Ampere's law for the current density. The present talk will focus on the main results of this theory. The electrostatic version of the model may be applied to the near-Earth environment (8-12 R_{E}) where beta is rather low. It is showed that inclusion of bouncing electron motion may enhance strongly the growth rate of the classical drift wave instability. This model could thus explain the generation of strong parallel electric fields in the ionosphere and the formation of aurora beads with wavelength of a few hundreds of km. In the electromagnetic version, it is found that for mildly stretched current sheet (B_{z} > 0.1 B _{lobes}) undamped modes oscillate at typical electron bounce frequency with wavelength of the order of the plasma sheet thickness. As the stretching of the plasma sheet becomes more intense, the frequency of these normal modes decreases and beyond a certain threshold in B_{z}/B _{lobes}, the mode becomes explosive (pure imaginary frequency) with typical growing rate of a few

  4. Efficient Visible Quasi-2D Perovskite Light-Emitting Diodes.

    PubMed

    Byun, Jinwoo; Cho, Himchan; Wolf, Christoph; Jang, Mi; Sadhanala, Aditya; Friend, Richard H; Yang, Hoichang; Lee, Tae-Woo

    2016-09-01

    Efficient quasi-2D-structure perovskite light-emitting diodes (4.90 cd A(-1) ) are demonstrated by mixing a 3D-structured perovskite material (methyl ammonium lead bromide) and a 2D-structured perovskite material (phenylethyl ammonium lead bromide), which can be ascribed to better film uniformity, enhanced exciton confinement, and reduced trap density. PMID:27334788

  5. Integrating Mobile Multimedia into Textbooks: 2D Barcodes

    ERIC Educational Resources Information Center

    Uluyol, Celebi; Agca, R. Kagan

    2012-01-01

    The major goal of this study was to empirically compare text-plus-mobile phone learning using an integrated 2D barcode tag in a printed text with three other conditions described in multimedia learning theory. The method examined in the study involved modifications of the instructional material such that: a 2D barcode was used near the text, the…

  6. Van der Waals stacked 2D layered materials for optoelectronics

    NASA Astrophysics Data System (ADS)

    Zhang, Wenjing; Wang, Qixing; Chen, Yu; Wang, Zhuo; Wee, Andrew T. S.

    2016-06-01

    The band gaps of many atomically thin 2D layered materials such as graphene, black phosphorus, monolayer semiconducting transition metal dichalcogenides and hBN range from 0 to 6 eV. These isolated atomic planes can be reassembled into hybrid heterostructures made layer by layer in a precisely chosen sequence. Thus, the electronic properties of 2D materials can be engineered by van der Waals stacking, and the interlayer coupling can be tuned, which opens up avenues for creating new material systems with rich functionalities and novel physical properties. Early studies suggest that van der Waals stacked 2D materials work exceptionally well, dramatically enriching the optoelectronics applications of 2D materials. Here we review recent progress in van der Waals stacked 2D materials, and discuss their potential applications in optoelectronics.

  7. Unitary quantum lattice gas representation of 2D quantum turbulence

    NASA Astrophysics Data System (ADS)

    Zhang, Bo; Vahala, George; Vahala, Linda; Soe, Min

    2011-05-01

    Quantum vortex structures and energy cascades are examined for two dimensional quantum turbulence (2D QT) using a special unitary evolution algorithm. The qubit lattice gas (QLG) algorithm, is employed to simulate the weakly-coupled Bose-Einstein condensate (BEC) governed by the Gross-Pitaevskii (GP) equation. A parameter regime is uncovered in which, as in 3D QT, there is a very short Poincare recurrence time. This short recurrence time is destroyed as the nonlinear interaction energy is increased. Energy cascades for 2D QT are considered to examine whether 2D QT exhibits the inverse cascades of 2D classical turbulence. In the parameter regime considered, the spectra analysis reveals no such dual cascades---dual cascades being a hallmark of 2D classical turbulence.

  8. CYP2D6 polymorphism in patients with eating disorders.

    PubMed

    Peñas-Lledó, E M; Dorado, P; Agüera, Z; Gratacós, M; Estivill, X; Fernández-Aranda, F; Llerena, A

    2012-04-01

    CYP2D6 polymorphism is associated with variability in drug response, endogenous metabolism (that is, serotonin), personality, neurocognition and psychopathology. The relationship between CYP2D6 genetic polymorphism and the risk of eating disorders (ED) was analyzed in 267 patients with ED and in 285 controls. A difference in the CYP2D6 active allele distribution was found between these groups. Women carrying more than two active genes (ultrarapid metabolizers) (7.5 vs 4.6%) or two (67 vs 58.9%) active genes were more frequent among patients with ED, whereas those with one (20.6 vs 30.2%) or zero active genes (4.9 vs 6.3%) were more frequent among controls (P<0.05). Although further research is needed, present findings suggest an association between CYP2D6 and ED. CYP2D6 allele distribution in patients with ED seems related to increased enzyme activity. PMID:20877302

  9. 2D materials and van der Waals heterostructures.

    PubMed

    Novoselov, K S; Mishchenko, A; Carvalho, A; Castro Neto, A H

    2016-07-29

    The physics of two-dimensional (2D) materials and heterostructures based on such crystals has been developing extremely fast. With these new materials, truly 2D physics has begun to appear (for instance, the absence of long-range order, 2D excitons, commensurate-incommensurate transition, etc.). Novel heterostructure devices--such as tunneling transistors, resonant tunneling diodes, and light-emitting diodes--are also starting to emerge. Composed from individual 2D crystals, such devices use the properties of those materials to create functionalities that are not accessible in other heterostructures. Here we review the properties of novel 2D crystals and examine how their properties are used in new heterostructure devices. PMID:27471306

  10. 2D Seismic Imaging of Elastic Parameters by Frequency Domain Full Waveform Inversion

    NASA Astrophysics Data System (ADS)

    Brossier, R.; Virieux, J.; Operto, S.

    2008-12-01

    Thanks to recent advances in parallel computing, full waveform inversion is today a tractable seismic imaging method to reconstruct physical parameters of the earth interior at different scales ranging from the near- surface to the deep crust. We present a massively parallel 2D frequency-domain full-waveform algorithm for imaging visco-elastic media from multi-component seismic data. The forward problem (i.e. the resolution of the frequency-domain 2D PSV elastodynamics equations) is based on low-order Discontinuous Galerkin (DG) method (P0 and/or P1 interpolations). Thanks to triangular unstructured meshes, the DG method allows accurate modeling of both body waves and surface waves in case of complex topography for a discretization of 10 to 15 cells per shear wavelength. The frequency-domain DG system is solved efficiently for multiple sources with the parallel direct solver MUMPS. The local inversion procedure (i.e. minimization of residuals between observed and computed data) is based on the adjoint-state method which allows to efficiently compute the gradient of the objective function. Applying the inversion hierarchically from the low frequencies to the higher ones defines a multiresolution imaging strategy which helps convergence towards the global minimum. In place of expensive Newton algorithm, the combined use of the diagonal terms of the approximate Hessian matrix and optimization algorithms based on quasi-Newton methods (Conjugate Gradient, LBFGS, ...) allows to improve the convergence of the iterative inversion. The distribution of forward problem solutions over processors driven by a mesh partitioning performed by METIS allows to apply most of the inversion in parallel. We shall present the main features of the parallel modeling/inversion algorithm, assess its scalability and illustrate its performances with realistic synthetic case studies.

  11. Rise characteristics of gas bubbles in a 2D rectangular column: VOF simulations vs experiments

    SciTech Connect

    Krishna, R.; Baten, J.M. van

    1999-10-01

    About five centuries ago, Leonardo da Vinci described the sinuous motion of gas bubbles rising in water. The authors have attempted to simulate the rise trajectories of bubbles of 4, 5, 7, 8, 9, 12, and 20 mm in diameter rising in a 2D rectangular column filled with water. The simulations were carried out using the volume-of-fluid (VOF) technique developed by Hirt and Nichols (J. Computational Physics, 39, 201--225 (1981)). To solve the Navier-Stokes equations of motion the authors used a commercial solver, CFX 4.1c of AEA Technology, UK. They developed their own bubble-tracking algorithm to capture sinuous bubble motions. The 4 and 5 mm bubbles show large lateral motions observed by Da Vinci. The 7, 8 and 9 mm bubble behave like jellyfish. The 12 mm bubble flaps its wings like a bird. The extent of lateral motion of the bubbles decreases with increasing bubble size. Bubbles larger than 20 mm in size assume a spherical cap form and simulations of the rise characteristics match experiments exactly. VOF simulations are powerful tools for a priori determination of the morphology and rise characteristics of bubbles rising in a liquid. Bubble-bubble interactions are also properly modeled by the VOF technique.

  12. Reynolds-Averaged Navier-Stokes Simulation of a 2D Circulation Control Wind Tunnel Experiment

    NASA Technical Reports Server (NTRS)

    Allan, Brian G.; Jones, Greg; Lin, John C.

    2011-01-01

    Numerical simulations are performed using a Reynolds-averaged Navier-Stokes (RANS) flow solver for a circulation control airfoil. 2D and 3D simulation results are compared to a circulation control wind tunnel test conducted at the NASA Langley Basic Aerodynamics Research Tunnel (BART). The RANS simulations are compared to a low blowing case with a jet momentum coefficient, C(sub u), of 0:047 and a higher blowing case of 0.115. Three dimensional simulations of the model and tunnel walls show wall effects on the lift and airfoil surface pressures. These wall effects include a 4% decrease of the midspan sectional lift for the C(sub u) 0.115 blowing condition. Simulations comparing the performance of the Spalart Allmaras (SA) and Shear Stress Transport (SST) turbulence models are also made, showing the SST model compares best to the experimental data. A Rotational/Curvature Correction (RCC) to the turbulence model is also evaluated demonstrating an improvement in the CFD predictions.

  13. 2D electrostatic PIC algorithm for laser induced studying plasma in vacuum

    NASA Astrophysics Data System (ADS)

    Álvarez, C. A.; Riascos, H.; Gonzalez, C.

    2016-02-01

    Particle-In-Cell(PIC) method is widely used for simulating plasma kinetic models. A 2D-PIC electrostatic algorithm is implemented for simulating the expansion of a laser- induced plasma plume. For potential and Electric Field calculation, Dirichlet and periodic boundary conditions are used in the X (perpendicular to the ablated material) and Y directions, respectively. Poisson-solver employs FFTW3 library and the five-point Laplacian to compute the electric potential. Electric field calculation is made by central finite differences method. Leap-frog scheme updates particle positions and velocities at each iteration. Plume expansion anlysis is done for the Emission and Post-Emission stages. In the Emission phase (while the laser is turned on), fast electron expansion is observed and ion particles remain near the surface of the ablated material. In the post-emission stage (with the laser turned off) the charge separation produces an electric field that accelerates the ions leading to the formation of a KeV per particle Ion-Front. At the end of the expansion, fastest electrons escape from the simulation space; an almost homogeneous ion-electron distribution is observed, decreasing the electric field value and the Coulomb interactions.

  14. Elliptic Solvers with Adaptive Mesh Refinement on Complex Geometries

    SciTech Connect

    Phillip, B.

    2000-07-24

    Adaptive Mesh Refinement (AMR) is a numerical technique for locally tailoring the resolution computational grids. Multilevel algorithms for solving elliptic problems on adaptive grids include the Fast Adaptive Composite grid method (FAC) and its parallel variants (AFAC and AFACx). Theory that confirms the independence of the convergence rates of FAC and AFAC on the number of refinement levels exists under certain ellipticity and approximation property conditions. Similar theory needs to be developed for AFACx. The effectiveness of multigrid-based elliptic solvers such as FAC, AFAC, and AFACx on adaptively refined overlapping grids is not clearly understood. Finally, a non-trivial eye model problem will be solved by combining the power of using overlapping grids for complex moving geometries, AMR, and multilevel elliptic solvers.

  15. CASTRO: A NEW COMPRESSIBLE ASTROPHYSICAL SOLVER. II. GRAY RADIATION HYDRODYNAMICS

    SciTech Connect

    Zhang, W.; Almgren, A.; Bell, J.; Howell, L.; Burrows, A.

    2011-10-01

    We describe the development of a flux-limited gray radiation solver for the compressible astrophysics code, CASTRO. CASTRO uses an Eulerian grid with block-structured adaptive mesh refinement based on a nested hierarchy of logically rectangular variable-sized grids with simultaneous refinement in both space and time. The gray radiation solver is based on a mixed-frame formulation of radiation hydrodynamics. In our approach, the system is split into two parts, one part that couples the radiation and fluid in a hyperbolic subsystem, and another parabolic part that evolves radiation diffusion and source-sink terms. The hyperbolic subsystem is solved explicitly with a high-order Godunov scheme, whereas the parabolic part is solved implicitly with a first-order backward Euler method.

  16. Parallel Auxiliary Space AMG Solver for $H(div)$ Problems

    SciTech Connect

    Kolev, Tzanio V.; Vassilevski, Panayot S.

    2012-12-18

    We present a family of scalable preconditioners for matrices arising in the discretization of $H(div)$ problems using the lowest order Raviart--Thomas finite elements. Our approach belongs to the class of “auxiliary space''--based methods and requires only the finite element stiffness matrix plus some minimal additional discretization information about the topology and orientation of mesh entities. Also, we provide a detailed algebraic description of the theory, parallel implementation, and different variants of this parallel auxiliary space divergence solver (ADS) and discuss its relations to the Hiptmair--Xu (HX) auxiliary space decomposition of $H(div)$ [SIAM J. Numer. Anal., 45 (2007), pp. 2483--2509] and to the auxiliary space Maxwell solver AMS [J. Comput. Math., 27 (2009), pp. 604--623]. Finally, an extensive set of numerical experiments demonstrates the robustness and scalability of our implementation on large-scale $H(div)$ problems with large jumps in the material coefficients.

  17. A spectral Poisson solver for kinetic plasma simulation

    NASA Astrophysics Data System (ADS)

    Szeremley, Daniel; Obberath, Jens; Brinkmann, Ralf

    2011-10-01

    Plasma resonance spectroscopy is a well established plasma diagnostic method, realized in several designs. One of these designs is the multipole resonance probe (MRP). In its idealized - geometrically simplified - version it consists of two dielectrically shielded, hemispherical electrodes to which an RF signal is applied. A numerical tool is under development which is capable of simulating the dynamics of the plasma surrounding the MRP in electrostatic approximation. In this contribution we concentrate on the specialized Poisson solver for that tool. The plasma is represented by an ensemble of point charges. By expanding both the charge density and the potential into spherical harmonics, a largely analytical solution of the Poisson problem can be employed. For a practical implementation, the expansion must be appropriately truncated. With this spectral solver we are able to efficiently solve the Poisson equation in a kinetic plasma simulation without the need of introducing a spatial discretization.

  18. Benchmarking ICRF Full-wave Solvers for ITER

    SciTech Connect

    R. V. Budny, L. Berry, R. Bilato, P. Bonoli, M. Brambilla, R. J. Dumont, A. Fukuyama, R. Harvey, E. F. Jaeger, K. Indireshkumar, E. Lerche, D. McCune, C. K. Phillips, V. Vdovin, J. Wright, and members of the ITPA-IOS

    2011-01-06

    Abstract Benchmarking of full-wave solvers for ICRF simulations is performed using plasma profiles and equilibria obtained from integrated self-consistent modeling predictions of four ITER plasmas. One is for a high performance baseline (5.3 T, 15 MA) DT H-mode. The others are for half-field, half-current plasmas of interest for the pre-activation phase with bulk plasma ion species being either hydrogen or He4. The predicted profiles are used by six full-wave solver groups to simulate the ICRF electromagnetic fields and heating, and by three of these groups to simulate the current-drive. Approximate agreement is achieved for the predicted heating power for the DT and He4 cases. Factor of two disagreements are found for the cases with second harmonic He3 heating in bulk H cases. Approximate agreement is achieved simulating the ICRF current drive.

  19. A functional implementation of the Jacobi eigen-solver

    SciTech Connect

    Boehm, A.P.W.; Hiromoto, R.E.

    1993-02-01

    In this paper, we describe the systematic development of two implementations of the Jacobi eigen-solver and give performance results for the MIT/Motorola Monsoon dataflow machine. Our study is carried out using MINT, the MIT Monsoon simulator. The design of these implementations follows from the mathematics of the Jacobi method, and not from a translation of an existing sequential code. The functional semantics with respect to array updates, which cause excessive array copying, has lead us to a new implementation of a parallel ``group-rotations`` algorithm first described by Sameh. Our version of this algorithm requires 0(n{sup 3}) operations, whereas Sameh`s original version requires 0(n{sup 4}) operations. The implementations are programmed in the language Id, and although Id has non-functional features, we have restricted the development of our eigen-solvers to the functional sub-set of the language.

  20. A functional implementation of the Jacobi eigen-solver

    SciTech Connect

    Boehm, A.P.W. . Dept. of Computer Science); Hiromoto, R.E. )

    1993-01-01

    In this paper, we describe the systematic development of two implementations of the Jacobi eigen-solver and give performance results for the MIT/Motorola Monsoon dataflow machine. Our study is carried out using MINT, the MIT Monsoon simulator. The design of these implementations follows from the mathematics of the Jacobi method, and not from a translation of an existing sequential code. The functional semantics with respect to array updates, which cause excessive array copying, has lead us to a new implementation of a parallel group-rotations'' algorithm first described by Sameh. Our version of this algorithm requires 0(n[sup 3]) operations, whereas Sameh's original version requires 0(n[sup 4]) operations. The implementations are programmed in the language Id, and although Id has non-functional features, we have restricted the development of our eigen-solvers to the functional sub-set of the language.

  1. LDRD report : parallel repartitioning for optimal solver performance.

    SciTech Connect

    Heaphy, Robert; Devine, Karen Dragon; Preis, Robert; Hendrickson, Bruce Alan; Heroux, Michael Allen; Boman, Erik Gunnar

    2004-02-01

    We have developed infrastructure, utilities and partitioning methods to improve data partitioning in linear solvers and preconditioners. Our efforts included incorporation of data repartitioning capabilities from the Zoltan toolkit into the Trilinos solver framework, (allowing dynamic repartitioning of Trilinos matrices); implementation of efficient distributed data directories and unstructured communication utilities in Zoltan and Trilinos; development of a new multi-constraint geometric partitioning algorithm (which can generate one decomposition that is good with respect to multiple criteria); and research into hypergraph partitioning algorithms (which provide up to 56% reduction of communication volume compared to graph partitioning for a number of emerging applications). This report includes descriptions of the infrastructure and algorithms developed, along with results demonstrating the effectiveness of our approaches.

  2. On improving linear solver performance: a block variant of GMRES

    SciTech Connect

    Baker, A H; Dennis, J M; Jessup, E R

    2004-05-10

    The increasing gap between processor performance and memory access time warrants the re-examination of data movement in iterative linear solver algorithms. For this reason, we explore and establish the feasibility of modifying a standard iterative linear solver algorithm in a manner that reduces the movement of data through memory. In particular, we present an alternative to the restarted GMRES algorithm for solving a single right-hand side linear system Ax = b based on solving the block linear system AX = B. Algorithm performance, i.e. time to solution, is improved by using the matrix A in operations on groups of vectors. Experimental results demonstrate the importance of implementation choices on data movement as well as the effectiveness of the new method on a variety of problems from different application areas.

  3. A Nonlinear Modal Aeroelastic Solver for FUN3D

    NASA Technical Reports Server (NTRS)

    Goldman, Benjamin D.; Bartels, Robert E.; Biedron, Robert T.; Scott, Robert C.

    2016-01-01

    A nonlinear structural solver has been implemented internally within the NASA FUN3D computational fluid dynamics code, allowing for some new aeroelastic capabilities. Using a modal representation of the structure, a set of differential or differential-algebraic equations are derived for general thin structures with geometric nonlinearities. ODEPACK and LAPACK routines are linked with FUN3D, and the nonlinear equations are solved at each CFD time step. The existing predictor-corrector method is retained, whereby the structural solution is updated after mesh deformation. The nonlinear solver is validated using a test case for a flexible aeroshell at transonic, supersonic, and hypersonic flow conditions. Agreement with linear theory is seen for the static aeroelastic solutions at relatively low dynamic pressures, but structural nonlinearities limit deformation amplitudes at high dynamic pressures. No flutter was found at any of the tested trajectory points, though LCO may be possible in the transonic regime.

  4. Scalable Out-of-Core Solvers on Xeon Phi Cluster

    SciTech Connect

    D'Azevedo, Ed F; Chan, Ki Shing; Su, Shiquan; Wong, Kwai

    2015-01-01

    This paper documents the implementation of a distributive out-of-core (OOC) solver for performing LU and Cholesky factorizations of a large dense matrix on clusters of many-core programmable co-processors. The out-of- core algorithm combines both the left-looking and right-looking schemes aimed to minimize the movement of data between the CPU host and the co-processor, optimizing data locality as well as computing throughput. The OOC solver is built to align with the format of the ScaLAPACK software library, making it readily portable to any existing codes using ScaLAPACK. A runtime analysis conducted on Beacon (an Intel Xeon plus Intel Xeon Phi cluster which composed of 48 nodes of multi-core CPU and MIC) at the Na- tional Institute for Computational Sciences is presented. Comparison of the performance on the Intel Xeon Phi and GPU clusters are also provided.

  5. Targeted fluorescence imaging enhanced by 2D materials: a comparison between 2D MoS2 and graphene oxide.

    PubMed

    Xie, Donghao; Ji, Ding-Kun; Zhang, Yue; Cao, Jun; Zheng, Hu; Liu, Lin; Zang, Yi; Li, Jia; Chen, Guo-Rong; James, Tony D; He, Xiao-Peng

    2016-08-01

    Here we demonstrate that 2D MoS2 can enhance the receptor-targeting and imaging ability of a fluorophore-labelled ligand. The 2D MoS2 has an enhanced working concentration range when compared with graphene oxide, resulting in the improved imaging of both cell and tissue samples. PMID:27378648

  6. Brittle Solvers: Lessons and insights into effective solvers for visco-plasticity in geodynamics

    NASA Astrophysics Data System (ADS)

    Spiegelman, M. W.; May, D.; Wilson, C. R.

    2014-12-01

    Plasticity/Fracture and rock failure are essential ingredients in geodynamic models as terrestrial rocks do not possess an infinite yield strength. Numerous physical mechanisms have been proposed to limit the strength of rocks, including low temperature plasticity and brittle fracture. While ductile and creep behavior of rocks at depth is largely accepted, the constitutive relations associated with brittle failure, or shear localisation, are more controversial. Nevertheless, there are really only a few macroscopic constitutive laws for visco-plasticity that are regularly used in geodynamics models. Independent of derivation, all of these can be cast as simple effective viscosities which act as stress limiters with different choices for yield surfaces; the most common being a von Mises (constant yield stress) or Drucker-Prager (pressure dependent yield-stress) criterion. The choice of plasticity model, however, can have significant consequences for the degree of non-linearity in a problem and the choice and efficiency of non-linear solvers. Here we describe a series of simplified 2 and 3-D model problems to elucidate several issues associated with obtaining accurate description and solution of visco-plastic problems. We demonstrate that1) Picard/Successive substitution schemes for solution of the non-linear problems can often stall at large values of the non-linear residual, thus producing spurious solutions2) Combined Picard/Newton schemes can be effective for a range of plasticity models, however, they can produce serious convergence problems for strongly pressure dependent plasticity models such as Drucker-Prager.3) Nevertheless, full Drucker-Prager may not be the plasticity model of choice for strong materials as the dynamic pressures produced in these layers can develop pathological behavior with Drucker-Prager, leading to stress strengthening rather than stress weakening behavior.4) In general, for any incompressible Stoke's problem, it is highly advisable to

  7. A chemical reaction network solver for the astrophysics code NIRVANA

    NASA Astrophysics Data System (ADS)

    Ziegler, U.

    2016-02-01

    Context. Chemistry often plays an important role in astrophysical gases. It regulates thermal properties by changing species abundances and via ionization processes. This way, time-dependent cooling mechanisms and other chemistry-related energy sources can have a profound influence on the dynamical evolution of an astrophysical system. Modeling those effects with the underlying chemical kinetics in realistic magneto-gasdynamical simulations provide the basis for a better link to observations. Aims: The present work describes the implementation of a chemical reaction network solver into the magneto-gasdynamical code NIRVANA. For this purpose a multispecies structure is installed, and a new module for evolving the rate equations of chemical kinetics is developed and coupled to the dynamical part of the code. A small chemical network for a hydrogen-helium plasma was constructed including associated thermal processes which is used in test problems. Methods: Evolving a chemical network within time-dependent simulations requires the additional solution of a set of coupled advection-reaction equations for species and gas temperature. Second-order Strang-splitting is used to separate the advection part from the reaction part. The ordinary differential equation (ODE) system representing the reaction part is solved with a fourth-order generalized Runge-Kutta method applicable for stiff systems inherent to astrochemistry. Results: A series of tests was performed in order to check the correctness of numerical and technical implementation. Tests include well-known stiff ODE problems from the mathematical literature in order to confirm accuracy properties of the solver used as well as problems combining gasdynamics and chemistry. Overall, very satisfactory results are achieved. Conclusions: The NIRVANA code is now ready to handle astrochemical processes in time-dependent simulations. An easy-to-use interface allows implementation of complex networks including thermal processes

  8. Scaling Algebraic Multigrid Solvers: On the Road to Exascale

    SciTech Connect

    Baker, A H; Falgout, R D; Gamblin, T; Kolev, T; Schulz, M; Yang, U M

    2010-12-12

    Algebraic Multigrid (AMG) solvers are an essential component of many large-scale scientific simulation codes. Their continued numerical scalability and efficient implementation is critical for preparing these codes for exascale. Our experiences on modern multi-core machines show that significant challenges must be addressed for AMG to perform well on such machines. We discuss our experiences and describe the techniques we have used to overcome scalability challenges for AMG on hybrid architectures in preparation for exascale.

  9. Boltzmann Solver with Adaptive Mesh in Velocity Space

    SciTech Connect

    Kolobov, Vladimir I.; Arslanbekov, Robert R.; Frolova, Anna A.

    2011-05-20

    We describe the implementation of direct Boltzmann solver with Adaptive Mesh in Velocity Space (AMVS) using quad/octree data structure. The benefits of the AMVS technique are demonstrated for the charged particle transport in weakly ionized plasmas where the collision integral is linear. We also describe the implementation of AMVS for the nonlinear Boltzmann collision integral. Test computations demonstrate both advantages and deficiencies of the current method for calculations of narrow-kernel distributions.

  10. A contribution to the great Riemann solver debate

    NASA Technical Reports Server (NTRS)

    Quirk, James J.

    1992-01-01

    The aims of this paper are threefold: to increase the level of awareness within the shock capturing community to the fact that many Godunov-type methods contain subtle flaws that can cause spurious solutions to be computed; to identify one mechanism that might thwart attempts to produce very high resolution simulations; and to proffer a simple strategy for overcoming the specific failings of individual Riemann solvers.

  11. An automatic ordering method for incomplete factorization iterative solvers

    SciTech Connect

    Forsyth, P.A.; Tang, W.P. . Dept. of Computer Science); D'Azevedo, E.F.D. )

    1991-01-01

    The minimum discarded fill (MDF) ordering strategy for incomplete factorization iterative solvers is developed. MDF ordering is demonstrated for several model son-symmetric problems, as well as a water-flooding simulation which uses an unstructured grid. The model problems show a three to five fold decrease in the number of iterations compared to natural orderings. Greater than twofold improvement was observed for the waterflooding simulation. 26 refs., 7 figs., 3 tabs.

  12. Menu-Driven Solver Of Linear-Programming Problems

    NASA Technical Reports Server (NTRS)

    Viterna, L. A.; Ferencz, D.

    1992-01-01

    Program assists inexperienced user in formulating linear-programming problems. A Linear Program Solver (ALPS) computer program is full-featured LP analysis program. Solves plain linear-programming problems as well as more-complicated mixed-integer and pure-integer programs. Also contains efficient technique for solution of purely binary linear-programming problems. Written entirely in IBM's APL2/PC software, Version 1.01. Packed program contains licensed material, property of IBM (copyright 1988, all rights reserved).

  13. 2D vs. 3D mammography observer study

    NASA Astrophysics Data System (ADS)

    Fernandez, James Reza F.; Hovanessian-Larsen, Linda; Liu, Brent

    2011-03-01

    Breast cancer is the most common type of non-skin cancer in women. 2D mammography is a screening tool to aid in the early detection of breast cancer, but has diagnostic limitations of overlapping tissues, especially in dense breasts. 3D mammography has the potential to improve detection outcomes by increasing specificity, and a new 3D screening tool with a 3D display for mammography aims to improve performance and efficiency as compared to 2D mammography. An observer study using a mammography phantom was performed to compare traditional 2D mammography with this ne 3D mammography technique. In comparing 3D and 2D mammography there was no difference in calcification detection, and mass detection was better in 2D as compared to 3D. There was a significant decrease in reading time for masses, calcifications, and normals in 3D compared to 2D, however, as well as more favorable confidence levels in reading normal cases. Given the limitations of the mammography phantom used, however, a clearer picture in comparing 3D and 2D mammography may be better acquired with the incorporation of human studies in the future.

  14. Efficient 2D MRI relaxometry using compressed sensing

    NASA Astrophysics Data System (ADS)

    Bai, Ruiliang; Cloninger, Alexander; Czaja, Wojciech; Basser, Peter J.

    2015-06-01

    Potential applications of 2D relaxation spectrum NMR and MRI to characterize complex water dynamics (e.g., compartmental exchange) in biology and other disciplines have increased in recent years. However, the large amount of data and long MR acquisition times required for conventional 2D MR relaxometry limits its applicability for in vivo preclinical and clinical MRI. We present a new MR pipeline for 2D relaxometry that incorporates compressed sensing (CS) as a means to vastly reduce the amount of 2D relaxation data needed for material and tissue characterization without compromising data quality. Unlike the conventional CS reconstruction in the Fourier space (k-space), the proposed CS algorithm is directly applied onto the Laplace space (the joint 2D relaxation data) without compressing k-space to reduce the amount of data required for 2D relaxation spectra. This framework is validated using synthetic data, with NMR data acquired in a well-characterized urea/water phantom, and on fixed porcine spinal cord tissue. The quality of the CS-reconstructed spectra was comparable to that of the conventional 2D relaxation spectra, as assessed using global correlation, local contrast between peaks, peak amplitude and relaxation parameters, etc. This result brings this important type of contrast closer to being realized in preclinical, clinical, and other applications.

  15. NITSOL: A Newton iterative solver for nonlinear systems

    SciTech Connect

    Pernice, M.; Walker, H.F.

    1996-12-31

    Newton iterative methods, also known as truncated Newton methods, are implementations of Newton`s method in which the linear systems that characterize Newton steps are solved approximately using iterative linear algebra methods. Here, we outline a well-developed Newton iterative algorithm together with a Fortran implementation called NITSOL. The basic algorithm is an inexact Newton method globalized by backtracking, in which each initial trial step is determined by applying an iterative linear solver until an inexact Newton criterion is satisfied. In the implementation, the user can specify inexact Newton criteria in several ways and select an iterative linear solver from among several popular {open_quotes}transpose-free{close_quotes} Krylov subspace methods. Jacobian-vector products used by the Krylov solver can be either evaluated analytically with a user-supplied routine or approximated using finite differences of function values. A flexible interface permits a wide variety of preconditioning strategies and allows the user to define a preconditioner and optionally update it periodically. We give details of these and other features and demonstrate the performance of the implementation on a representative set of test problems.

  16. Transonic Drag Prediction Using an Unstructured Multigrid Solver

    NASA Technical Reports Server (NTRS)

    Mavriplis, D. J.; Levy, David W.

    2001-01-01

    This paper summarizes the results obtained with the NSU-3D unstructured multigrid solver for the AIAA Drag Prediction Workshop held in Anaheim, CA, June 2001. The test case for the workshop consists of a wing-body configuration at transonic flow conditions. Flow analyses for a complete test matrix of lift coefficient values and Mach numbers at a constant Reynolds number are performed, thus producing a set of drag polars and drag rise curves which are compared with experimental data. Results were obtained independently by both authors using an identical baseline grid and different refined grids. Most cases were run in parallel on commodity cluster-type machines while the largest cases were run on an SGI Origin machine using 128 processors. The objective of this paper is to study the accuracy of the subject unstructured grid solver for predicting drag in the transonic cruise regime, to assess the efficiency of the method in terms of convergence, cpu time, and memory, and to determine the effects of grid resolution on this predictive ability and its computational efficiency. A good predictive ability is demonstrated over a wide range of conditions, although accuracy was found to degrade for cases at higher Mach numbers and lift values where increasing amounts of flow separation occur. The ability to rapidly compute large numbers of cases at varying flow conditions using an unstructured solver on inexpensive clusters of commodity computers is also demonstrated.

  17. A Survey of Solver-Related Geometry and Meshing Issues

    NASA Technical Reports Server (NTRS)

    Masters, James; Daniel, Derick; Gudenkauf, Jared; Hine, David; Sideroff, Chris

    2016-01-01

    There is a concern in the computational fluid dynamics community that mesh generation is a significant bottleneck in the CFD workflow. This is one of several papers that will help set the stage for a moderated panel discussion addressing this issue. Although certain general "rules of thumb" and a priori mesh metrics can be used to ensure that some base level of mesh quality is achieved, inadequate consideration is often given to the type of solver or particular flow regime on which the mesh will be utilized. This paper explores how an analyst may want to think differently about a mesh based on considerations such as if a flow is compressible vs. incompressible or hypersonic vs. subsonic or if the solver is node-centered vs. cell-centered. This paper is a high-level investigation intended to provide general insight into how considering the nature of the solver or flow when performing mesh generation has the potential to increase the accuracy and/or robustness of the solution and drive the mesh generation process to a state where it is no longer a hindrance to the analysis process.

  18. NKG2D receptor and its ligands in host defense

    PubMed Central

    Lanier, Lewis L.

    2015-01-01

    NKG2D is an activating receptor expressed on the surface of natural killer (NK) cells, CD8+ T cells, and subsets of CD4+ T cells, iNKT cells, and γδ T cells. In humans NKG2D transmits signals by its association with the DAP10 adapter subunit and in mice alternatively spliced isoforms transmit signals either using DAP10 or DAP12 adapter subunits. Although NKG2D is encoded by a highly conserved gene (KLRK1) with limited polymorphism, the receptor recognizes an extensive repertoire of ligands, encoded by at least 8 genes in humans (MICA, MICB, RAET1E, RAET1G, RAET1H, RAET1I, RAET1L, and RAET1N), some with extensive allelic polymorphism. Expression of the NKG2D ligands is tightly regulated at the level of transcription, translation, and post-translation. In general healthy adult tissues do not express NKG2D glycoproteins on the cell surface, but these ligands can be induced by hyper-proliferation and transformation, as well as when cells are infected by pathogens. Thus, the NKG2D pathway serves a mechanism for the immune system to detect and eliminate cells that have undergone “stress”. Viruses and tumor cells have devised numerous strategies to evade detection by the NKG2D surveillance system and diversification of the NKG2D ligand genes likely has been driven by selective pressures imposed by pathogens. NKG2D provides an attractive target for therapeutics in the treatment of infectious diseases, cancer, and autoimmune diseases. PMID:26041808

  19. A new solver for the elastic normal contact problem using conjugate gradients, deflation, and an FFT-based preconditioner

    NASA Astrophysics Data System (ADS)

    Vollebregt, E. A. H.

    2014-01-01

    This paper presents our new solver BCCG+FAI for solving elastic normal contact problems. This is a comprehensible approach that is based on the Conjugate Gradients (CG) algorithm and that uses FFTs. A first novel aspect is the definition of the “FFT-based Approximate Inverse” preconditioner. The underlying idea is that the inverse matrix can be approximated well using a Toeplitz or block-Toeplitz form, which can be computed using the FFT of the original matrix elements. This preconditioner makes the total number of CG iterations effectively constant in 2D and very slowly increasing in 3D problems. A second novelty is how we deal with a prescribed total force. This uses a deflation technique in such a way that CGs convergence and finite termination properties are maintained. Numerical results show that this solver is more effective than existing CG-based strategies, such that it can compete with Multi-Grid strategies over a much larger problem range. In our opinion it could be the new method of choice because of its simple structure and elegant theory, and because robust performance is achieved independently of any problem specific parameters.

  20. An unstructured mesh arbitrary Lagrangian-Eulerian unsteady incompressible flow solver and its application to insect flight aerodynamics

    NASA Astrophysics Data System (ADS)

    Su, Xiaohui; Cao, Yuanwei; Zhao, Yong

    2016-06-01

    In this paper, an unstructured mesh Arbitrary Lagrangian-Eulerian (ALE) incompressible flow solver is developed to investigate the aerodynamics of insect hovering flight. The proposed finite-volume ALE Navier-Stokes solver is based on the artificial compressibility method (ACM) with a high-resolution method of characteristics-based scheme on unstructured grids. The present ALE model is validated and assessed through flow passing over an oscillating cylinder. Good agreements with experimental results and other numerical solutions are obtained, which demonstrates the accuracy and the capability of the present model. The lift generation mechanisms of 2D wing in hovering motion, including wake capture, delayed stall, rapid pitch, as well as clap and fling are then studied and illustrated using the current ALE model. Moreover, the optimized angular amplitude in symmetry model, 45°, is firstly reported in details using averaged lift and the energy power method. Besides, the lift generation of complete cyclic clap and fling motion, which is simulated by few researchers using the ALE method due to large deformation, is studied and clarified for the first time. The present ALE model is found to be a useful tool to investigate lift force generation mechanism for insect wing flight.

  1. 2D constant-loss taper for mode conversion

    NASA Astrophysics Data System (ADS)

    Horth, Alexandre; Kashyap, Raman; Quitoriano, Nathaniel J.

    2015-03-01

    Proposed in this manuscript is a novel taper geometry, the constant-loss taper (CLT). This geometry is derived with 1D slabs of silicon embedded in silicon dioxide using coupled-mode theory (CMT). The efficiency of the CLT is compared to both linear and parabolic tapers using CMT and 2D finite-difference time-domain simulations. It is shown that over a short 2D, 4.45 μm long taper the CLT's mode conversion efficiency is ~90% which is 10% and 18% more efficient than a 2D parabolic or linear taper, respectively.

  2. Recent advances in 2D materials for photocatalysis

    NASA Astrophysics Data System (ADS)

    Luo, Bin; Liu, Gang; Wang, Lianzhou

    2016-03-01

    Two-dimensional (2D) materials have attracted increasing attention for photocatalytic applications because of their unique thickness dependent physical and chemical properties. This review gives a brief overview of the recent developments concerning the chemical synthesis and structural design of 2D materials at the nanoscale and their applications in photocatalytic areas. In particular, recent progress on the emerging strategies for tailoring 2D material-based photocatalysts to improve their photo-activity including elemental doping, heterostructure design and functional architecture assembly is discussed.

  3. Comparison of 2D and 3D gamma analyses

    SciTech Connect

    Pulliam, Kiley B.; Huang, Jessie Y.; Howell, Rebecca M.; Followill, David; Kry, Stephen F.; Bosca, Ryan; O’Daniel, Jennifer

    2014-02-15

    Purpose: As clinics begin to use 3D metrics for intensity-modulated radiation therapy (IMRT) quality assurance, it must be noted that these metrics will often produce results different from those produced by their 2D counterparts. 3D and 2D gamma analyses would be expected to produce different values, in part because of the different search space available. In the present investigation, the authors compared the results of 2D and 3D gamma analysis (where both datasets were generated in the same manner) for clinical treatment plans. Methods: Fifty IMRT plans were selected from the authors’ clinical database, and recalculated using Monte Carlo. Treatment planning system-calculated (“evaluated dose distributions”) and Monte Carlo-recalculated (“reference dose distributions”) dose distributions were compared using 2D and 3D gamma analysis. This analysis was performed using a variety of dose-difference (5%, 3%, 2%, and 1%) and distance-to-agreement (5, 3, 2, and 1 mm) acceptance criteria, low-dose thresholds (5%, 10%, and 15% of the prescription dose), and data grid sizes (1.0, 1.5, and 3.0 mm). Each comparison was evaluated to determine the average 2D and 3D gamma, lower 95th percentile gamma value, and percentage of pixels passing gamma. Results: The average gamma, lower 95th percentile gamma value, and percentage of passing pixels for each acceptance criterion demonstrated better agreement for 3D than for 2D analysis for every plan comparison. The average difference in the percentage of passing pixels between the 2D and 3D analyses with no low-dose threshold ranged from 0.9% to 2.1%. Similarly, using a low-dose threshold resulted in a difference between the mean 2D and 3D results, ranging from 0.8% to 1.5%. The authors observed no appreciable differences in gamma with changes in the data density (constant difference: 0.8% for 2D vs 3D). Conclusions: The authors found that 3D gamma analysis resulted in up to 2.9% more pixels passing than 2D analysis. It must

  4. Materials for Flexible, Stretchable Electronics: Graphene and 2D Materials

    NASA Astrophysics Data System (ADS)

    Kim, Sang Jin; Choi, Kyoungjun; Lee, Bora; Kim, Yuna; Hong, Byung Hee

    2015-07-01

    Recently, 2D materials have been intensively studied as emerging materials for future electronics, including flexible electronics, photonics, and electrochemical energy storage devices. Among representative 2D materials (such as graphene, boron nitride, and transition metal dichalcogenides) that exhibit extraordinary properties, graphene stands out in the flexible electronics field due to its combination of high electron mobility, high thermal conductivity, high specific surface area, high optical transparency, excellent mechanical flexibility, and environmental stability. This review covers the synthesis, transfer, and characterization methods of graphene and 2D materials and graphene's application to flexible devices as well as comparison with other competing materials.

  5. The Method of Space-time Conservation Element and Solution Element: Development of a New Implicit Solver

    NASA Technical Reports Server (NTRS)

    Chang, S. C.; Wang, X. Y.; Chow, C. Y.; Himansu, A.

    1995-01-01

    The method of space-time conservation element and solution element is a nontraditional numerical method designed from a physicist's perspective, i.e., its development is based more on physics than numerics. It uses only the simplest approximation techniques and yet is capable of generating nearly perfect solutions for a 2-D shock reflection problem used by Helen Yee and others. In addition to providing an overall view of the new method, we introduce a new concept in the design of implicit schemes, and use it to construct a highly accurate solver for a convection-diffusion equation. It is shown that, in the inviscid case, this new scheme becomes explicit and its amplification factors are identical to those of the Leapfrog scheme. On the other hand, in the pure diffusion case, its principal amplification factor becomes the amplification factor of the Crank-Nicolson scheme.

  6. An AMR capable finite element diffusion solver for ALE hydrocodes [An AMR capable diffusion solver for ALE-AMR

    SciTech Connect

    Fisher, A. C.; Bailey, D. S.; Kaiser, T. B.; Eder, D. C.; Gunney, B. T. N.; Masters, N. D.; Koniges, A. E.; Anderson, R. W.

    2015-02-01

    Here, we present a novel method for the solution of the diffusion equation on a composite AMR mesh. This approach is suitable for including diffusion based physics modules to hydrocodes that support ALE and AMR capabilities. To illustrate, we proffer our implementations of diffusion based radiation transport and heat conduction in a hydrocode called ALE-AMR. Numerical experiments conducted with the diffusion solver and associated physics packages yield 2nd order convergence in the L2 norm.

  7. Recent developments in 2D layered inorganic nanomaterials for sensing

    NASA Astrophysics Data System (ADS)

    Kannan, Padmanathan Karthick; Late, Dattatray J.; Morgan, Hywel; Rout, Chandra Sekhar

    2015-08-01

    Two dimensional layered inorganic nanomaterials (2D-LINs) have recently attracted huge interest because of their unique thickness dependent physical and chemical properties and potential technological applications. The properties of these layered materials can be tuned via both physical and chemical processes. Some 2D layered inorganic nanomaterials like MoS2, WS2 and SnS2 have been recently developed and employed in various applications, including new sensors because of their layer-dependent electrical properties. This article presents a comprehensive overview of recent developments in the application of 2D layered inorganic nanomaterials as sensors. Some of the salient features of 2D materials for different sensing applications are discussed, including gas sensing, electrochemical sensing, SERS and biosensing, SERS sensing and photodetection. The working principles of the sensors are also discussed together with examples.

  8. 2. D Street facade and rear (east) blank wall of ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    2. D Street facade and rear (east) blank wall of parking garage. Farther east is 408 8th Street (National Art And Frame Company). - PMI Parking Garage, 403-407 Ninth Street, Northwest, Washington, District of Columbia, DC

  9. Collective excitations in 2D hard-disc fluid.

    PubMed

    Huerta, Adrian; Bryk, Taras; Trokhymchuk, Andrij

    2015-07-01

    Collective dynamics of a two-dimensional (2D) hard-disc fluid was studied by molecular dynamics simulations in the range of packing fractions that covers states up to the freezing. Some striking features concerning collective excitations in this system were observed. In particular, the short-wavelength shear waves while being absent at low packing fractions were observed in the range of high packing fractions, just before the freezing transition in a 2D hard-disc fluid. In contrast, the so-called "positive sound dispersion" typically observed in dense Lennard-Jones-like fluids, was not detected for the 2D hard-disc fluid. The ratio of specific heats in the 2D hard-disc fluid shows a monotonic increase with density approaching the freezing, resembling in this way the similar behavior in the vicinity of the Widom line in the case of supercritical fluids. PMID:25595625

  10. Alloyed 2D Metal-Semiconductor Atomic Layer Junctions.

    PubMed

    Kim, Ah Ra; Kim, Yonghun; Nam, Jaewook; Chung, Hee-Suk; Kim, Dong Jae; Kwon, Jung-Dae; Park, Sang Won; Park, Jucheol; Choi, Sun Young; Lee, Byoung Hun; Park, Ji Hyeon; Lee, Kyu Hwan; Kim, Dong-Ho; Choi, Sung Mook; Ajayan, Pulickel M; Hahm, Myung Gwan; Cho, Byungjin

    2016-03-01

    Heterostructures of compositionally and electronically variant two-dimensional (2D) atomic layers are viable building blocks for ultrathin optoelectronic devices. We show that the composition of interfacial transition region between semiconducting WSe2 atomic layer channels and metallic NbSe2 contact layers can be engineered through interfacial doping with Nb atoms. WxNb1-xSe2 interfacial regions considerably lower the potential barrier height of the junction, significantly improving the performance of the corresponding WSe2-based field-effect transistor devices. The creation of such alloyed 2D junctions between dissimilar atomic layer domains could be the most important factor in controlling the electronic properties of 2D junctions and the design and fabrication of 2D atomic layer devices. PMID:26839956

  11. Technical Review of the UNET2D Hydraulic Model

    SciTech Connect

    Perkins, William A.; Richmond, Marshall C.

    2009-05-18

    The Kansas City District of the US Army Corps of Engineers is engaged in a broad range of river management projects that require knowledge of spatially-varied hydraulic conditions such as velocities and water surface elevations. This information is needed to design new structures, improve existing operations, and assess aquatic habitat. Two-dimensional (2D) depth-averaged numerical hydraulic models are a common tool that can be used to provide velocity and depth information. Kansas City District is currently using a specific 2D model, UNET2D, that has been developed to meet the needs of their river engineering applications. This report documents a tech- nical review of UNET2D.

  12. From weakly to strongly interacting 2D Fermi gases

    NASA Astrophysics Data System (ADS)

    Dyke, Paul; Fenech, Kristian; Lingham, Marcus; Peppler, Tyson; Hoinka, Sascha; Vale, Chris

    2014-05-01

    We study ultracold 2D Fermi gases of 6Li formed in a highly oblate trapping potential. The potential is generated by a cylindrically focused, blue detuned TEM01 mode laser beam. Weak magnetic field curvature provides highly harmonic confinement in the radial direction and we can readily produce single clouds with an aspect ratio of 230. Our experiments investigate the dimensional crossover from 3D to 2D for a two component Fermi gas in the Bose-Einstein Condensate to Bardeen Cooper Schrieffer crossover. Observation of an elbow in measurements of the cloud width vs. atom number is consistent with populating only the lowest transverse harmonic oscillator state for weak attractive interactions. This measurement is extended to the strongly interacting region using the broad Feshbach resonance at 832 G. We also report our progress towards measurement of the 2D equation of state for an interacting 2D Fermi gas via in-situ absorption imaging.

  13. Chemical vapour deposition: Transition metal carbides go 2D

    NASA Astrophysics Data System (ADS)

    Gogotsi, Yury

    2015-11-01

    The unique properties of 2D materials, such as graphene or transition metal dichalcogenides, have been attracting much attention in the past decade. Now, metallically conductive and even superconducting transition metal carbides are entering the game.

  14. Dominant 2D magnetic turbulence in the solar wind

    NASA Technical Reports Server (NTRS)

    Bieber, John W.; Wanner, Wolfgang; Matthaeus, William H.

    1995-01-01

    There have been recent suggestions that solar wind magnetic turbulence may be a composite of slab geometry (wavevector aligned with the mean magnetic field) and 2D geometry (wavevectors perpendicular to the mean field). We report results of two new tests of this hypothesis using Helios measurements of inertial ranged magnetic spectra in the solar wind. The first test is based upon a characteristic difference between perpendicular and parallel reduced power spectra which is expected for the 2D component but not for the slab component. The second test examines the dependence of power spectrum density upon the magnetic field angle (i.e., the angle between the mean magnetic field and the radial direction), a relationship which is expected to be in opposite directions for the slab and 2D components. Both tests support the presence of a dominant (approximately 85 percent by energy) 2D component in solar wind magnetic turbulence.

  15. Dominant 2D magnetic turbulence in the solar wind

    SciTech Connect

    Bieber, John W.; Wanner, Wolfgang; Matthaeus, William H.

    1996-07-20

    There have been recent suggestions that solar wind magnetic turbulence may be a composite of slab geometry (wavevectors aligned with the mean magnetic field) and 2D geometry (wavevectors perpendicular to the mean field). We report results of two new tests of this hypothesis using Helios measurements of mid-inertial range magnetic spectra in the solar wind. The first test is based upon a characteristic difference between reduced magnetic power spectra in the two different directions perpendicular to the mean field. Such a difference is expected for 2D geometry but not for slab geometry. The second test examines the dependence of power spectrum density upon the magnetic field angle (i.e., the angle between the mean magnetic field and the radial direction), a relationship which is expected to be in opposite directions for the slab and 2D components. Both tests support the presence of a dominant ({approx}85% by energy) 2D component in solar wind magnetic turbulence.

  16. Efficient framework for deformable 2D-3D registration

    NASA Astrophysics Data System (ADS)

    Fluck, Oliver; Aharon, Shmuel; Khamene, Ali

    2008-03-01

    Using 2D-3D registration it is possible to extract the body transformation between the coordinate systems of X-ray and volumetric CT images. Our initial motivation is the improvement of accuracy of external beam radiation therapy, an effective method for treating cancer, where CT data play a central role in radiation treatment planning. Rigid body transformation is used to compute the correct patient setup. The drawback of such approaches is that the rigidity assumption on the imaged object is not valid for most of the patient cases, mainly due to respiratory motion. In the present work, we address this limitation by proposing a flexible framework for deformable 2D-3D registration consisting of a learning phase incorporating 4D CT data sets and hardware accelerated free form DRR generation, 2D motion computation, and 2D-3D back projection.

  17. HEAT.PRO - THERMAL IMBALANCE FORCE SIMULATION AND ANALYSIS USING PDE2D

    NASA Technical Reports Server (NTRS)

    Vigue, Y.

    1994-01-01

    HEAT.PRO calculates the thermal imbalance force resulting from satellite surface heating. The heated body of a satellite re-radiates energy at a rate that is proportional to its temperature, losing the energy in the form of photons. By conservation of momentum, this momentum flux out of the body creates a reaction force against the radiation surface, and the net thermal force can be observed as a small perturbation that affects long term orbital behavior of the satellite. HEAT.PRO calculates this thermal imbalance force and then determines its effects on satellite orbits, especially where the Earth's shadowing of an orbiting satellite causes periodic changes in the spacecraft's thermal environment. HEAT.PRO implements a finite element method routine called PDE2D which incorporates material properties to determine the solar panel surface temperatures. The nodal temperatures are computed at specified time steps and are used to determine the magnitude and direction of the thermal force on the spacecraft. These calculations are based on the solar panel orientation and satellite's position with respect to the earth and sun. It is necessary to have accurate, current knowledge of surface emissivity, thermal conductivity, heat capacity, and material density. These parameters, which may change due to degradation of materials in the environment of space, influence the nodal temperatures that are computed and thus the thermal force calculations. HEAT.PRO was written in FORTRAN 77 for Cray series computers running UNICOS. The source code contains directives for and is used as input to the required partial differential equation solver, PDE2D. HEAT.PRO is available on a 9-track 1600 BPI magnetic tape in UNIX tar format (standard distribution medium) or a .25 inch streaming magnetic tape cartridge in UNIX tar format. An electronic copy of the documentation in Macintosh Microsoft Word format is included on the distribution tape. HEAT.PRO was developed in 1991. Cray and UNICOS are

  18. Computational Design of 2D materials for Energy Applications

    NASA Astrophysics Data System (ADS)

    Sun, Qiang

    2015-03-01

    Since the successful synthesis of graphene, tremendous efforts have been devoted to two-dimensional monolayers such as boron nitride (BN), silicene and MoS2. These 2D materials exhibit a large variety of physical and chemical properties with unprecedented applications. Here we report our recent studies of computational design of 2D materials for fuel cell applications which include hydrogen storage, CO2 capture, CO conversion and O2 reduction.

  19. Generating a 2D Representation of a Complex Data Structure

    NASA Technical Reports Server (NTRS)

    James, Mark

    2006-01-01

    A computer program, designed to assist in the development and debugging of other software, generates a two-dimensional (2D) representation of a possibly complex n-dimensional (where n is an integer >2) data structure or abstract rank-n object in that other software. The nature of the 2D representation is such that it can be displayed on a non-graphical output device and distributed by non-graphical means.

  20. Phylogenetic tree construction based on 2D graphical representation

    NASA Astrophysics Data System (ADS)

    Liao, Bo; Shan, Xinzhou; Zhu, Wen; Li, Renfa

    2006-04-01

    A new approach based on the two-dimensional (2D) graphical representation of the whole genome sequence [Bo Liao, Chem. Phys. Lett., 401(2005) 196.] is proposed to analyze the phylogenetic relationships of genomes. The evolutionary distances are obtained through measuring the differences among the 2D curves. The fuzzy theory is used to construct phylogenetic tree. The phylogenetic relationships of H5N1 avian influenza virus illustrate the utility of our approach.