Science.gov

Sample records for 3-d computer code

  1. 3-D field computation: The near-triumph of commerical codes

    SciTech Connect

    Turner, L.R.

    1995-07-01

    In recent years, more and more of those who design and analyze magnets and other devices are using commercial codes rather than developing their own. This paper considers the commercial codes and the features available with them. Other recent trends with 3-D field computation include parallel computation and visualization methods such as virtual reality systems.

  2. User's manual for PELE3D: a computer code for three-dimensional incompressible fluid dynamics

    SciTech Connect

    McMaster, W H

    1982-05-07

    The PELE3D code is a three-dimensional semi-implicit Eulerian hydrodynamics computer program for the solution of incompressible fluid flow coupled to a structure. The fluid and coupling algorithms have been adapted from the previously developed two-dimensional code PELE-IC. The PELE3D code is written in both plane and cylindrical coordinates. The coupling algorithm is general enough to handle a variety of structural shapes. The free surface algorithm is able to accommodate a top surface and several independent bubbles. The code is in a developmental status since all the intended options have not been fully implemented and tested. Development of this code ended in 1980 upon termination of the contract with the Nuclear Regulatory Commission.

  3. A new 3-D integral code for computation of accelerator magnets

    SciTech Connect

    Turner, L.R.; Kettunen, L.

    1991-01-01

    For computing accelerator magnets, integral codes have several advantages over finite element codes; far-field boundaries are treated automatically, and computed field in the bore region satisfy Maxwell's equations exactly. A new integral code employing edge elements rather than nodal elements has overcome the difficulties associated with earlier integral codes. By the use of field integrals (potential differences) as solution variables, the number of unknowns is reduced to one less than the number of nodes. Two examples, a hollow iron sphere and the dipole magnet of Advanced Photon Source injector synchrotron, show the capability of the code. The CPU time requirements are comparable to those of three-dimensional (3-D) finite-element codes. Experiments show that in practice it can realize much of the potential CPU time saving that parallel processing makes possible. 8 refs., 4 figs., 1 tab.

  4. FURN3D: A computer code for radiative heat transfer in pulverized coal furnaces

    SciTech Connect

    Ahluwalia, R.K.; Im, K.H.

    1992-08-01

    A computer code FURN3D has been developed for assessing the impact of burning different coals on heat absorption pattern in pulverized coal furnaces. The code is unique in its ability to conduct detailed spectral calculations of radiation transport in furnaces fully accounting for the size distributions of char, soot and ash particles, ash content, and ash composition. The code uses a hybrid technique of solving the three-dimensional radiation transport equation for absorbing, emitting and anisotropically scattering media. The technique achieves an optimal mix of computational speed and accuracy by combining the discrete ordinate method (S[sub 4]), modified differential approximation (MDA) and P, approximation in different range of optical thicknesses. The code uses spectroscopic data for estimating the absorption coefficients of participating gases C0[sub 2], H[sub 2]0 and CO. It invokes Mie theory for determining the extinction and scattering coefficients of combustion particulates. The optical constants of char, soot and ash are obtained from dispersion relations derived from reflectivity, transmissivity and extinction measurements. A control-volume formulation is adopted for determining the temperature field inside the furnace. A simple char burnout model is employed for estimating heat release and evolution of particle size distribution. The code is written in Fortran 77, has modular form, and is machine-independent. The computer memory required by the code depends upon the number of grid points specified and whether the transport calculations are performed on spectral or gray basis.

  5. FURN3D: A computer code for radiative heat transfer in pulverized coal furnaces

    SciTech Connect

    Ahluwalia, R.K.; Im, K.H.

    1992-08-01

    A computer code FURN3D has been developed for assessing the impact of burning different coals on heat absorption pattern in pulverized coal furnaces. The code is unique in its ability to conduct detailed spectral calculations of radiation transport in furnaces fully accounting for the size distributions of char, soot and ash particles, ash content, and ash composition. The code uses a hybrid technique of solving the three-dimensional radiation transport equation for absorbing, emitting and anisotropically scattering media. The technique achieves an optimal mix of computational speed and accuracy by combining the discrete ordinate method (S{sub 4}), modified differential approximation (MDA) and P, approximation in different range of optical thicknesses. The code uses spectroscopic data for estimating the absorption coefficients of participating gases C0{sub 2}, H{sub 2}0 and CO. It invokes Mie theory for determining the extinction and scattering coefficients of combustion particulates. The optical constants of char, soot and ash are obtained from dispersion relations derived from reflectivity, transmissivity and extinction measurements. A control-volume formulation is adopted for determining the temperature field inside the furnace. A simple char burnout model is employed for estimating heat release and evolution of particle size distribution. The code is written in Fortran 77, has modular form, and is machine-independent. The computer memory required by the code depends upon the number of grid points specified and whether the transport calculations are performed on spectral or gray basis.

  6. Implementation of a 3D mixing layer code on parallel computers

    NASA Technical Reports Server (NTRS)

    Roe, K.; Thakur, R.; Dang, T.; Bogucz, E.

    1995-01-01

    This paper summarizes our progress and experience in the development of a Computational-Fluid-Dynamics code on parallel computers to simulate three-dimensional spatially-developing mixing layers. In this initial study, the three-dimensional time-dependent Euler equations are solved using a finite-volume explicit time-marching algorithm. The code was first programmed in Fortran 77 for sequential computers. The code was then converted for use on parallel computers using the conventional message-passing technique, while we have not been able to compile the code with the present version of HPF compilers.

  7. The 3D MHD code GOEMHD3 for astrophysical plasmas with large Reynolds numbers. Code description, verification, and computational performance

    NASA Astrophysics Data System (ADS)

    Skála, J.; Baruffa, F.; Büchner, J.; Rampp, M.

    2015-08-01

    Context. The numerical simulation of turbulence and flows in almost ideal astrophysical plasmas with large Reynolds numbers motivates the implementation of magnetohydrodynamical (MHD) computer codes with low resistivity. They need to be computationally efficient and scale well with large numbers of CPU cores, allow obtaining a high grid resolution over large simulation domains, and be easily and modularly extensible, for instance, to new initial and boundary conditions. Aims: Our aims are the implementation, optimization, and verification of a computationally efficient, highly scalable, and easily extensible low-dissipative MHD simulation code for the numerical investigation of the dynamics of astrophysical plasmas with large Reynolds numbers in three dimensions (3D). Methods: The new GOEMHD3 code discretizes the ideal part of the MHD equations using a fast and efficient leap-frog scheme that is second-order accurate in space and time and whose initial and boundary conditions can easily be modified. For the investigation of diffusive and dissipative processes the corresponding terms are discretized by a DuFort-Frankel scheme. To always fulfill the Courant-Friedrichs-Lewy stability criterion, the time step of the code is adapted dynamically. Numerically induced local oscillations are suppressed by explicit, externally controlled diffusion terms. Non-equidistant grids are implemented, which enhance the spatial resolution, where needed. GOEMHD3 is parallelized based on the hybrid MPI-OpenMP programing paradigm, adopting a standard two-dimensional domain-decomposition approach. Results: The ideal part of the equation solver is verified by performing numerical tests of the evolution of the well-understood Kelvin-Helmholtz instability and of Orszag-Tang vortices. The accuracy of solving the (resistive) induction equation is tested by simulating the decay of a cylindrical current column. Furthermore, we show that the computational performance of the code scales very

  8. Development, Verification and Use of Gust Modeling in the NASA Computational Fluid Dynamics Code FUN3D

    NASA Technical Reports Server (NTRS)

    Bartels, Robert E.

    2012-01-01

    This paper presents the implementation of gust modeling capability in the CFD code FUN3D. The gust capability is verified by computing the response of an airfoil to a sharp edged gust. This result is compared with the theoretical result. The present simulations will be compared with other CFD gust simulations. This paper also serves as a users manual for FUN3D gust analyses using a variety of gust profiles. Finally, the development of an Auto-Regressive Moving-Average (ARMA) reduced order gust model using a gust with a Gaussian profile in the FUN3D code is presented. ARMA simulated results of a sequence of one-minus-cosine gusts is shown to compare well with the same gust profile computed with FUN3D. Proper Orthogonal Decomposition (POD) is combined with the ARMA modeling technique to predict the time varying pressure coefficient increment distribution due to a novel gust profile. The aeroelastic response of a pitch/plunge airfoil to a gust environment is computed with a reduced order model, and compared with a direct simulation of the system in the FUN3D code. The two results are found to agree very well.

  9. Decoder for 3-D color codes

    NASA Astrophysics Data System (ADS)

    Hsu, Kung-Chuan; Brun, Todd

    Transversal circuits are important components of fault-tolerant quantum computation. Several classes of quantum error-correcting codes are known to have transversal implementations of any logical Clifford operation. However, to achieve universal quantum computation, it would be helpful to have high-performance error-correcting codes that have a transversal implementation of some logical non-Clifford operation. The 3-D color codes are a class of topological codes that permit transversal implementation of the logical π / 8 -gate. The decoding problem of a 3-D color code can be understood as a graph-matching problem on a three-dimensional lattice. Whether this class of codes will be useful in terms of performance is still an open question. We investigate the decoding problem of 3-D color codes and analyze the performance of some possible decoders.

  10. A 3D-PNS computer code for the calculation of supersonic combusting flows

    NASA Technical Reports Server (NTRS)

    Chitsomboon, Tawit; Northam, G. Burton

    1988-01-01

    A computer code has been developed based on the three-dimensional parabolized Navier-Stokes (PNS) equations which govern the supersonic combusting flow of the hydrogen-air system. The finite difference algorithm employed was a hybrid of the Schiff-Steger algorithm and the Vigneron, et al., algorithm which is fully implicit and fully coupled. The combustion of hydrogen and air was modeled by the finite-rate two-step combustion model of Rogers-Chinitz. A new dependent variable vector was introduced to simplify the numerical algorithm. Robustness of the algorithm was considerably enhanced by introducing an adjustable parameter. The computer code was used to solve a premixed shock-induced combustion problem and the results were compared with those of a full Navier-Stokes code. Reasonably good agreement was obtained at a fraction of the cost of the full Navier-Stokes procedure.

  11. Users manual for CAFE-3D : a computational fluid dynamics fire code.

    SciTech Connect

    Khalil, Imane; Lopez, Carlos; Suo-Anttila, Ahti Jorma

    2005-03-01

    The Container Analysis Fire Environment (CAFE) computer code has been developed to model all relevant fire physics for predicting the thermal response of massive objects engulfed in large fires. It provides realistic fire thermal boundary conditions for use in design of radioactive material packages and in risk-based transportation studies. The CAFE code can be coupled to commercial finite-element codes such as MSC PATRAN/THERMAL and ANSYS. This coupled system of codes can be used to determine the internal thermal response of finite element models of packages to a range of fire environments. This document is a user manual describing how to use the three-dimensional version of CAFE, as well as a description of CAFE input and output parameters. Since this is a user manual, only a brief theoretical description of the equations and physical models is included.

  12. 3D Computations and Experiments

    SciTech Connect

    Couch, R; Faux, D; Goto, D; Nikkel, D

    2003-05-12

    This project is in its first full year after the combining of two previously funded projects: ''3D Code Development'' and ''Dynamic Material Properties''. The motivation behind this move was to emphasize and strengthen the ties between the experimental work and the computational model development in the materials area. The next year's activities will indicate the merging of the two efforts. The current activity is structured in two tasks. Task A, ''Simulations and Measurements'', combines all the material model development and associated numerical work with the materials-oriented experimental activities. Task B, ''ALE3D Development'', is a continuation of the non-materials related activities from the previous project.

  13. Modeling and Analysis of a Lunar Space Reactor with the Computer Code RELAP5-3D/ATHENA

    SciTech Connect

    Carbajo, Juan J; Qualls, A L

    2008-01-01

    The transient analysis 3-dimensional (3-D) computer code RELAP5-3D/ATHENA has been employed to model and analyze a space reactor of 180 kW(thermal), 40 kW (net, electrical) with eight Stirling engines (SEs). Each SE will generate over 6 kWe; the excess power will be needed for the pumps and other power management devices. The reactor will be cooled by NaK (a eutectic mixture of sodium and potassium which is liquid at ambient temperature). This space reactor is intended to be deployed over the surface of the Moon or Mars. The reactor operating life will be 8 to 10 years. The RELAP5-3D/ATHENA code is being developed and maintained by Idaho National Laboratory. The code can employ a variety of coolants in addition to water, the original coolant employed with early versions of the code. The code can also use 3-D volumes and 3-D junctions, thus allowing for more realistic representation of complex geometries. A combination of 3-D and 1-D volumes is employed in this study. The space reactor model consists of a primary loop and two secondary loops connected by two heat exchangers (HXs). Each secondary loop provides heat to four SEs. The primary loop includes the nuclear reactor with the lower and upper plena, the core with 85 fuel pins, and two vertical heat exchangers (HX). The maximum coolant temperature of the primary loop is 900 K. The secondary loops also employ NaK as a coolant at a maximum temperature of 877 K. The SEs heads are at a temperature of 800 K and the cold sinks are at a temperature of ~400 K. Two radiators will be employed to remove heat from the SEs. The SE HXs surrounding the SE heads are of annular design and have been modeled using 3-D volumes. These 3-D models have been used to improve the HX design by optimizing the flows of coolant and maximizing the heat transferred to the SE heads. The transients analyzed include failure of one or more Stirling engines, trip of the reactor pump, and trips of the secondary loop pumps feeding the HXs of the

  14. Modeling Warm Dense Matter Experiments using the 3D ALE-AMR Code and the Move Toward Exascale Computing

    SciTech Connect

    Koniges, A; Eder, E; Liu, W; Barnard, J; Friedman, A; Logan, G; Fisher, A; Masers, N; Bertozzi, A

    2011-11-04

    The Neutralized Drift Compression Experiment II (NDCX II) is an induction accelerator planned for initial commissioning in 2012. The final design calls for a 3 MeV, Li+ ion beam, delivered in a bunch with characteristic pulse duration of 1 ns, and transverse dimension of order 1 mm. The NDCX II will be used in studies of material in the warm dense matter (WDM) regime, and ion beam/hydrodynamic coupling experiments relevant to heavy ion based inertial fusion energy. We discuss recent efforts to adapt the 3D ALE-AMR code to model WDM experiments on NDCX II. The code, which combines Arbitrary Lagrangian Eulerian (ALE) hydrodynamics with Adaptive Mesh Refinement (AMR), has physics models that include ion deposition, radiation hydrodynamics, thermal diffusion, anisotropic material strength with material time history, and advanced models for fragmentation. Experiments at NDCX-II will explore the process of bubble and droplet formation (two-phase expansion) of superheated metal solids using ion beams. Experiments at higher temperatures will explore equation of state and heavy ion fusion beam-to-target energy coupling efficiency. Ion beams allow precise control of local beam energy deposition providing uniform volumetric heating on a timescale shorter than that of hydrodynamic expansion. The ALE-AMR code does not have any export control restrictions and is currently running at the National Energy Research Scientific Computing Center (NERSC) at LBNL and has been shown to scale well to thousands of CPUs. New surface tension models that are being implemented and applied to WDM experiments. Some of the approaches use a diffuse interface surface tension model that is based on the advective Cahn-Hilliard equations, which allows for droplet breakup in divergent velocity fields without the need for imposed perturbations. Other methods require seeding or other methods for droplet breakup. We also briefly discuss the effects of the move to exascale computing and related

  15. 3D Computations and Experiments

    SciTech Connect

    Couch, R; Faux, D; Goto, D; Nikkel, D

    2004-04-05

    This project consists of two activities. Task A, Simulations and Measurements, combines all the material model development and associated numerical work with the materials-oriented experimental activities. The goal of this effort is to provide an improved understanding of dynamic material properties and to provide accurate numerical representations of those properties for use in analysis codes. Task B, ALE3D Development, involves general development activities in the ALE3D code with the focus of improving simulation capabilities for problems of mutual interest to DoD and DOE. Emphasis is on problems involving multi-phase flow, blast loading of structures and system safety/vulnerability studies.

  16. The Intercomparison of 3D Radiation Codes (I3RC): Showcasing Mathematical and Computational Physics in a Critical Atmospheric Application

    NASA Astrophysics Data System (ADS)

    Davis, A. B.; Cahalan, R. F.

    2001-05-01

    The Intercomparison of 3D Radiation Codes (I3RC) is an on-going initiative involving an international group of over 30 researchers engaged in the numerical modeling of three-dimensional radiative transfer as applied to clouds. Because of their strong variability and extreme opacity, clouds are indeed a major source of uncertainty in the Earth's local radiation budget (at GCM grid scales). Also 3D effects (at satellite pixel scales) invalidate the standard plane-parallel assumption made in the routine of cloud-property remote sensing at NASA and NOAA. Accordingly, the test-cases used in I3RC are based on inputs and outputs which relate to cloud effects in atmospheric heating rates and in real-world remote sensing geometries. The main objectives of I3RC are to (1) enable participants to improve their models, (2) publish results as a community, (3) archive source code, and (4) educate. We will survey the status of I3RC and its plans for the near future with a special emphasis on the mathematical models and computational approaches. We will also describe some of the prime applications of I3RC's efforts in climate models, cloud-resolving models, and remote-sensing observations of clouds, or that of the surface in their presence. In all these application areas, computational efficiency is the main concern and not accuracy. One of I3RC's main goals is to document the performance of as wide a variety as possible of three-dimensional radiative transfer models for a small but representative number of ``cases.'' However, it is dominated by modelers working at the level of linear transport theory (i.e., they solve the radiative transfer equation) and an overwhelming majority of these participants use slow-but-robust Monte Carlo techniques. This means that only a small portion of the efficiency vs. accuracy vs. flexibility domain is currently populated by I3RC participants. To balance this natural clustering the present authors have organized a systematic outreach towards

  17. TACO3D. 3-D Finite Element Heat Transfer Code

    SciTech Connect

    Mason, W.E.

    1992-03-04

    TACO3D is a three-dimensional, finite-element program for heat transfer analysis. An extension of the two-dimensional TACO program, it can perform linear and nonlinear analyses and can be used to solve either transient or steady-state problems. The program accepts time-dependent or temperature-dependent material properties, and materials may be isotropic or orthotropic. A variety of time-dependent and temperature-dependent boundary conditions and loadings are available including temperature, flux, convection, and radiation boundary conditions and internal heat generation. Additional specialized features treat enclosure radiation, bulk nodes, and master/slave internal surface conditions (e.g., contact resistance). Data input via a free-field format is provided. A user subprogram feature allows for any type of functional representation of any independent variable. A profile (bandwidth) minimization option is available. The code is limited to implicit time integration for transient solutions. TACO3D has no general mesh generation capability. Rows of evenly-spaced nodes and rows of sequential elements may be generated, but the program relies on separate mesh generators for complex zoning. TACO3D does not have the ability to calculate view factors internally. Graphical representation of data in the form of time history and spatial plots is provided through links to the POSTACO and GRAPE postprocessor codes.

  18. Three dimensional Monte Carlo simulation of molecular movement and heat radiation in vacuum devices: Computer code MOVAK3D

    NASA Astrophysics Data System (ADS)

    Class, G.

    1987-07-01

    A program to simulate gas motion and shine through of thermal radiation in fusion reactor vacuum flow channels was developed. The inner surface of the flow channel is described by plane areas (triangles, parallelograms) and by surfaces of revolution. By introducing control planes in the flow path, a variance reduction and shortening of the computation, respectively, are achieved through particle splitting and Russian roulette. The code is written in PL/I and verified using published data. Computer aided input of model data is performed interactively either under IBM-TSO or at a microprocessor (IBM PC-AT). The data files are exchangeable between the IBM-mainframe and IBM-PC computers. Both computers can produce plots of the elaborated channel model. For testing, the simulating computation can likewise be run interactively, whereas the production computation can be issued batchwise. The results of code verification are explained, and examples of channel models and of the interactive mode are given.

  19. Development of a locally mass flux conservative computer code for calculating 3-D viscous flow in turbomachines

    NASA Technical Reports Server (NTRS)

    Walitt, L.

    1982-01-01

    The VANS successive approximation numerical method was extended to the computation of three dimensional, viscous, transonic flows in turbomachines. A cross-sectional computer code, which conserves mass flux at each point of the cross-sectional surface of computation was developed. In the VANS numerical method, the cross-sectional computation follows a blade-to-blade calculation. Numerical calculations were made for an axial annular turbine cascade and a transonic, centrifugal impeller with splitter vanes. The subsonic turbine cascade computation was generated in blade-to-blade surface to evaluate the accuracy of the blade-to-blade mode of marching. Calculated blade pressures at the hub, mid, and tip radii of the cascade agreed with corresponding measurements. The transonic impeller computation was conducted to test the newly developed locally mass flux conservative cross-sectional computer code. Both blade-to-blade and cross sectional modes of calculation were implemented for this problem. A triplet point shock structure was computed in the inducer region of the impeller. In addition, time-averaged shroud static pressures generally agreed with measured shroud pressures. It is concluded that the blade-to-blade computation produces a useful engineering flow field in regions of subsonic relative flow; and cross-sectional computation, with a locally mass flux conservative continuity equation, is required to compute the shock waves in regions of supersonic relative flow.

  20. FACET: a radiation view factor computer code for axisymmetric, 2D planar, and 3D geometries with shadowing

    SciTech Connect

    Shapiro, A.B.

    1983-08-01

    The computer code FACET calculates the radiation geometric view factor (alternatively called shape factor, angle factor, or configuration factor) between surfaces for axisymmetric, two-dimensional planar and three-dimensional geometries with interposed third surface obstructions. FACET was developed to calculate view factors for input to finite-element heat-transfer analysis codes. The first section of this report is a brief review of previous radiation-view-factor computer codes. The second section presents the defining integral equation for the geometric view factor between two surfaces and the assumptions made in its derivation. Also in this section are the numerical algorithms used to integrate this equation for the various geometries. The third section presents the algorithms used to detect self-shadowing and third-surface shadowing between the two surfaces for which a view factor is being calculated. The fourth section provides a user's input guide followed by several example problems.

  1. FARGO3D: Hydrodynamics/magnetohydrodynamics code

    NASA Astrophysics Data System (ADS)

    Benítez Llambay, Pablo; Masset, Frédéric

    2015-09-01

    A successor of FARGO (ascl:1102.017), FARGO3D is a versatile HD/MHD code that runs on clusters of CPUs or GPUs, with special emphasis on protoplanetary disks. FARGO3D offers Cartesian, cylindrical or spherical geometry; 1-, 2- or 3-dimensional calculations; and orbital advection (aka FARGO) for HD and MHD calculations. As in FARGO, a simple Runge-Kutta N-body solver may be used to describe the orbital evolution of embedded point-like objects. There is no need to know CUDA; users can develop new functions in C and have them translated to CUDA automatically to run on GPUs.

  2. Scaling and performance of a 3-D radiation hydrodynamics code on message-passing parallel computers: final report

    SciTech Connect

    Hayes, J C; Norman, M

    1999-10-28

    This report details an investigation into the efficacy of two approaches to solving the radiation diffusion equation within a radiation hydrodynamic simulation. Because leading-edge scientific computing platforms have evolved from large single-node vector processors to parallel aggregates containing tens to thousands of individual CPU's, the ability of an algorithm to maintain high compute efficiency when distributed over a large array of nodes is critically important. The viability of an algorithm thus hinges upon the tripartite question of numerical accuracy, total time to solution, and parallel efficiency.

  3. Multirate 3-D subband coding of video.

    PubMed

    Taubman, D; Zakhor, A

    1994-01-01

    We propose a full color video compression strategy, based on 3-D subband coding with camera pan compensation, to generate a single embedded bit stream supporting multiple decoder display formats and a wide, finely gradated range of bit rates. An experimental implementation of our algorithm produces a single bit stream, from which suitable subsets are extracted to be compatible with many decoder frame sizes and frame rates and to satisfy transmission bandwidth constraints ranging from several tens of kilobits per second to several megabits per second. Reconstructed video quality from any of these bit stream subsets is often found to exceed that obtained from an MPEG-1 implementation, operated with equivalent bit rate constraints, in both perceptual quality and mean squared error. In addition, when restricted to 2-D, the algorithm produces some of the best results available in still image compression. PMID:18291953

  4. 3D Multigroup Sn Neutron Transport Code

    2001-02-14

    ATTILA is a 3D multigroup transport code with arbitrary order ansotropic scatter. The transport equation is solved in first order form using a tri-linear discontinuous spatial differencing on an arbitrary tetrahedral mesh. The overall solution technique is source iteration with DSA acceleration of the scattering source. Anisotropic boundary and internal sources may be entered in the form of spherical harmonics moments. Alpha and k eigenvalue problems are allowed, as well as fixed source problems. Forwardmore » and adjoint solutions are available. Reflective, vacumn, and source boundary conditions are available. ATTILA can perform charged particle transport calculations using slowing down (CSD) terms. ATTILA can also be used to peform infra-red steady-state calculations for radiative transfer purposes.« less

  5. 3D Multigroup Sn Neutron Transport Code

    SciTech Connect

    McGee, John; Wareing, Todd; Pautz, Shawn

    2001-02-14

    ATTILA is a 3D multigroup transport code with arbitrary order ansotropic scatter. The transport equation is solved in first order form using a tri-linear discontinuous spatial differencing on an arbitrary tetrahedral mesh. The overall solution technique is source iteration with DSA acceleration of the scattering source. Anisotropic boundary and internal sources may be entered in the form of spherical harmonics moments. Alpha and k eigenvalue problems are allowed, as well as fixed source problems. Forward and adjoint solutions are available. Reflective, vacumn, and source boundary conditions are available. ATTILA can perform charged particle transport calculations using slowing down (CSD) terms. ATTILA can also be used to peform infra-red steady-state calculations for radiative transfer purposes.

  6. VISRAD, 3-D Target Design and Radiation Simulation Code

    NASA Astrophysics Data System (ADS)

    Li, Yingjie; Macfarlane, Joseph; Golovkin, Igor

    2015-11-01

    The 3-D view factor code VISRAD is widely used in designing HEDP experiments at major laser and pulsed-power facilities, including NIF, OMEGA, OMEGA-EP, ORION, LMJ, Z, and PLX. It simulates target designs by generating a 3-D grid of surface elements, utilizing a variety of 3-D primitives and surface removal algorithms, and can be used to compute the radiation flux throughout the surface element grid by computing element-to-element view factors and solving power balance equations. Target set-up and beam pointing are facilitated by allowing users to specify positions and angular orientations using a variety of coordinates systems (e.g., that of any laser beam, target component, or diagnostic port). Analytic modeling for laser beam spatial profiles for OMEGA DPPs and NIF CPPs is used to compute laser intensity profiles throughout the grid of surface elements. We will discuss recent improvements to the software package and plans for future developments.

  7. 3D Elastic Seismic Wave Propagation Code

    1998-09-23

    E3D is capable of simulating seismic wave propagation in a 3D heterogeneous earth. Seismic waves are initiated by earthquake, explosive, and/or other sources. These waves propagate through a 3D geologic model, and are simulated as synthetic seismograms or other graphical output.

  8. Towards a 3D Space Radiation Transport Code

    NASA Technical Reports Server (NTRS)

    Wilson, J. W.; Tripathl, R. K.; Cicomptta, F. A.; Heinbockel, J. H.; Tweed, J.

    2002-01-01

    High-speed computational procedures for space radiation shielding have relied on asymptotic expansions in terms of the off-axis scatter and replacement of the general geometry problem by a collection of flat plates. This type of solution was derived for application to human rated systems in which the radius of the shielded volume is large compared to the off-axis diffusion limiting leakage at lateral boundaries. Over the decades these computational codes are relatively complete and lateral diffusion effects are now being added. The analysis for developing a practical full 3D space shielding code is presented.

  9. Computational modeling of RNA 3D structures and interactions.

    PubMed

    Dawson, Wayne K; Bujnicki, Janusz M

    2016-04-01

    RNA molecules have key functions in cellular processes beyond being carriers of protein-coding information. These functions are often dependent on the ability to form complex three-dimensional (3D) structures. However, experimental determination of RNA 3D structures is difficult, which has prompted the development of computational methods for structure prediction from sequence. Recent progress in 3D structure modeling of RNA and emerging approaches for predicting RNA interactions with ions, ligands and proteins have been stimulated by successes in protein 3D structure modeling. PMID:26689764

  10. Beam Optics Analysis - An Advanced 3D Trajectory Code

    SciTech Connect

    Ives, R. Lawrence; Bui, Thuc; Vogler, William; Neilson, Jeff; Read, Mike; Shephard, Mark; Bauer, Andrew; Datta, Dibyendu; Beal, Mark

    2006-01-03

    Calabazas Creek Research, Inc. has completed initial development of an advanced, 3D program for modeling electron trajectories in electromagnetic fields. The code is being used to design complex guns and collectors. Beam Optics Analysis (BOA) is a fully relativistic, charged particle code using adaptive, finite element meshing. Geometrical input is imported from CAD programs generating ACIS-formatted files. Parametric data is inputted using an intuitive, graphical user interface (GUI), which also provides control of convergence, accuracy, and post processing. The program includes a magnetic field solver, and magnetic information can be imported from Maxwell 2D/3D and other programs. The program supports thermionic emission and injected beams. Secondary electron emission is also supported, including multiple generations. Work on field emission is in progress as well as implementation of computer optimization of both the geometry and operating parameters. The principle features of the program and its capabilities are presented.

  11. Beam Optics Analysis — An Advanced 3D Trajectory Code

    NASA Astrophysics Data System (ADS)

    Ives, R. Lawrence; Bui, Thuc; Vogler, William; Neilson, Jeff; Read, Mike; Shephard, Mark; Bauer, Andrew; Datta, Dibyendu; Beal, Mark

    2006-01-01

    Calabazas Creek Research, Inc. has completed initial development of an advanced, 3D program for modeling electron trajectories in electromagnetic fields. The code is being used to design complex guns and collectors. Beam Optics Analysis (BOA) is a fully relativistic, charged particle code using adaptive, finite element meshing. Geometrical input is imported from CAD programs generating ACIS-formatted files. Parametric data is inputted using an intuitive, graphical user interface (GUI), which also provides control of convergence, accuracy, and post processing. The program includes a magnetic field solver, and magnetic information can be imported from Maxwell 2D/3D and other programs. The program supports thermionic emission and injected beams. Secondary electron emission is also supported, including multiple generations. Work on field emission is in progress as well as implementation of computer optimization of both the geometry and operating parameters. The principle features of the program and its capabilities are presented.

  12. Streamlining of the RELAP5-3D Code

    SciTech Connect

    Mesina, George L; Hykes, Joshua; Guillen, Donna Post

    2007-11-01

    RELAP5-3D is widely used by the nuclear community to simulate general thermal hydraulic systems and has proven to be so versatile that the spectrum of transient two-phase problems that can be analyzed has increased substantially over time. To accommodate the many new types of problems that are analyzed by RELAP5-3D, both the physics and numerical methods of the code have been continuously improved. In the area of computational methods and mathematical techniques, many upgrades and improvements have been made decrease code run time and increase solution accuracy. These include vectorization, parallelization, use of improved equation solvers for thermal hydraulics and neutron kinetics, and incorporation of improved library utilities. In the area of applied nuclear engineering, expanded capabilities include boron and level tracking models, radiation/conduction enclosure model, feedwater heater and compressor components, fluids and corresponding correlations for modeling Generation IV reactor designs, and coupling to computational fluid dynamics solvers. Ongoing and proposed future developments include improvements to the two-phase pump model, conversion to FORTRAN 90, and coupling to more computer programs. This paper summarizes the general improvements made to RELAP5-3D, with an emphasis on streamlining the code infrastructure for improved maintenance and development. With all these past, present and planned developments, it is necessary to modify the code infrastructure to incorporate modifications in a consistent and maintainable manner. Modifying a complex code such as RELAP5-3D to incorporate new models, upgrade numerics, and optimize existing code becomes more difficult as the code grows larger. The difficulty of this as well as the chance of introducing errors is significantly reduced when the code is structured. To streamline the code into a structured program, a commercial restructuring tool, FOR_STRUCT, was applied to the RELAP5-3D source files. The

  13. Axisymmetric Implementation for 3D-Based DSMC Codes

    NASA Technical Reports Server (NTRS)

    Stewart, Benedicte; Lumpkin, F. E.; LeBeau, G. J.

    2011-01-01

    The primary objective in developing NASA s DSMC Analysis Code (DAC) was to provide a high fidelity modeling tool for 3D rarefied flows such as vacuum plume impingement and hypersonic re-entry flows [1]. The initial implementation has been expanded over time to offer other capabilities including a novel axisymmetric implementation. Because of the inherently 3D nature of DAC, this axisymmetric implementation uses a 3D Cartesian domain and 3D surfaces. Molecules are moved in all three dimensions but their movements are limited by physical walls to a small wedge centered on the plane of symmetry (Figure 1). Unfortunately, far from the axis of symmetry, the cell size in the direction perpendicular to the plane of symmetry (the Z-direction) may become large compared to the flow mean free path. This frequently results in inaccuracies in these regions of the domain. A new axisymmetric implementation is presented which aims to solve this issue by using Bird s approach for the molecular movement while preserving the 3D nature of the DAC software [2]. First, the computational domain is similar to that previously used such that a wedge must still be used to define the inflow surface and solid walls within the domain. As before molecules are created inside the inflow wedge triangles but they are now rotated back to the symmetry plane. During the move step, molecules are moved in 3D but instead of interacting with the wedge walls, the molecules are rotated back to the plane of symmetry at the end of the move step. This new implementation was tested for multiple flows over axisymmetric shapes, including a sphere, a cone, a double cone and a hollow cylinder. Comparisons to previous DSMC solutions and experiments, when available, are made.

  14. 3D Finite Element Trajectory Code with Adaptive Meshing

    NASA Astrophysics Data System (ADS)

    Ives, Lawrence; Bui, Thuc; Vogler, William; Bauer, Andy; Shephard, Mark; Beal, Mark; Tran, Hien

    2004-11-01

    Beam Optics Analysis, a new, 3D charged particle program is available and in use for the design of complex, 3D electron guns and charged particle devices. The code reads files directly from most CAD and solid modeling programs, includes an intuitive Graphical User Interface (GUI), and a robust mesh generator that is fully automatic. Complex problems can be set up, and analysis initiated in minutes. The program includes a user-friendly post processor for displaying field and trajectory data using 3D plots and images. The electrostatic solver is based on the standard nodal finite element method. The magnetostatic field solver is based on the vector finite element method and is also called during the trajectory simulation process to solve for self magnetic fields. The user imports the geometry from essentially any commercial CAD program and uses the GUI to assign parameters (voltages, currents, dielectric constant) and designate emitters (including work function, emitter temperature, and number of trajectories). The the mesh is generated automatically and analysis is performed, including mesh adaptation to improve accuracy and optimize computational resources. This presentation will provide information on the basic structure of the code, its operation, and it's capabilities.

  15. Computer Code

    NASA Technical Reports Server (NTRS)

    1985-01-01

    COSMIC MINIVER, a computer code developed by NASA for analyzing aerodynamic heating and heat transfer on the Space Shuttle, has been used by Marquardt Company to analyze heat transfer on Navy/Air Force missile bodies. The code analyzes heat transfer by four different methods which can be compared for accuracy. MINIVER saved Marquardt three months in computer time and $15,000.

  16. Code System to Simulate 3D Tracer Dispersion in Atmosphere.

    2002-01-25

    Version 00 SHREDI is a shielding code system which executes removal-diffusion computations for bi-dimensional shields in r-z or x-y geometries. It may also deal with monodimensional problems (infinitely high cylinders or slabs). MESYST can simulate 3D tracer dispersion in the atmosphere. Three programs are part of this system: CRE_TOPO prepares the terrain data for MESYST. NOABL calculates three-dimensional free divergence windfields over complex terrain. PAS computes tracer concentrations and depositions on a given domain. Themore » purpose of this work is to develop a reliable simulation tool for pollutant atmospheric dispersion, which gives a realistic approach and allows one to compute the pollutant concentrations over complex terrains with good accuracy. The factional brownian model, which furnishes more accurate concentration values, is introduced to calculate pollutant atmospheric dispersion. The model was validated on SIESTA international experiments.« less

  17. The 3-D inelastic analyses for computational structural mechanics

    NASA Technical Reports Server (NTRS)

    Hopkins, D. A.; Chamis, C. C.

    1989-01-01

    The 3-D inelastic analysis method is a focused program with the objective to develop computationally effective analysis methods and attendant computer codes for three-dimensional, nonlinear time and temperature dependent problems present in the hot section of turbojet engine structures. Development of these methods was a major part of the Hot Section Technology (HOST) program over the past five years at Lewis Research Center.

  18. The CONV-3D code for DNS CFD calculation

    NASA Astrophysics Data System (ADS)

    Chudanov, Vladimir; ALCF ThermHydraX Team

    2014-03-01

    The CONV-3D code for DNS CFD calculation of thermal and hydrodynamics on Fast Reactor with use of supercomputers is developed. This code is highly effective in a scalability at the high performance computers such as ``Chebyshev'', ``Lomonosov'' (Moscow State University, Russia), Blue Gene/Q(ALCF MIRA, ANL). The scalability is reached up to 106 processors. The code was validated on a series of the well known tests in a wide range of Rayleigh (106-1016) and Reynolds (103-105. Such code was validated on the blind tests OECD/NEA of the turbulent intermixing in horizontal subchannels of the fuel assembly at normal pressure and temperature (Matis-H), of the flows in T-junction and the report IBRAE/ANL was published. The good coincidence of numerical predictions with experimental data was reached, that specifies applicability of the developed approach for a prediction of thermal and hydrodynamics in a boundary layer at small Prandtl that is characteristic of the liquid metal reactors. Project Name: ThermHydraX. Project Title: U.S.-Russia Collaboration on Cross-Verification and Validation in Thermal Hydraulics.

  19. Applications of the computer codes FLUX2D and PHI3D for the electromagnetic analysis of compressed magnetic field generators and power flow channels

    SciTech Connect

    Hodgdon, M.L.; Oona, H.; Martinez, A.R.; Salon, S.; Wendling, P.; Krahenbuhl, L.; Nicolas, A.; Nicolas, L.

    1989-01-01

    We present herein the results of three electromagnetic field problems for compressed magnetic field generators and their associated power flow channels. The first problem is the computation of the transient magnetic field in a two-dimensional model of helical generator during loading. The second problem is the three-dimensional eddy current patterns in a section of an armature beneath a bifurcation point of a helical winding. Our third problem is the calculation of the three-dimensional electrostatic fields in a region known as the post-hole convolute in which a rod connects the inner and outer walls of a system of three concentric cylinders through a hole in the middle cylinder. While analytic solutions exist for many electromagnetic field problems in cases of special and ideal geometries, the solutions of these and similar problems for the proper analysis and design of compressed magnetic field generators and their related hardware require computer simulations. In earlier studies, computer models have been proposed, several based on research oriented hydrocodes to which uncoupled or partially coupled Maxwell's equations solvers are added. Although the hydrocode models address the problem of moving, deformable conductors, they are not useful for electromagnetic analysis, nor can they be considered design tools. For our studies, we take advantage of the commercial, electromagnetic computer-aided design software packages FLUX2D nd PHI3D that were developed for motor manufacturers and utilities industries. 4 refs., 6 figs.

  20. FUN3D and CFL3D Computations for the First High Lift Prediction Workshop

    NASA Technical Reports Server (NTRS)

    Park, Michael A.; Lee-Rausch, Elizabeth M.; Rumsey, Christopher L.

    2011-01-01

    Two Reynolds-averaged Navier-Stokes codes were used to compute flow over the NASA Trapezoidal Wing at high lift conditions for the 1st AIAA CFD High Lift Prediction Workshop, held in Chicago in June 2010. The unstructured-grid code FUN3D and the structured-grid code CFL3D were applied to several different grid systems. The effects of code, grid system, turbulence model, viscous term treatment, and brackets were studied. The SST model on this configuration predicted lower lift than the Spalart-Allmaras model at high angles of attack; the Spalart-Allmaras model agreed better with experiment. Neglecting viscous cross-derivative terms caused poorer prediction in the wing tip vortex region. Output-based grid adaptation was applied to the unstructured-grid solutions. The adapted grids better resolved wake structures and reduced flap flow separation, which was also observed in uniform grid refinement studies. Limitations of the adaptation method as well as areas for future improvement were identified.

  1. RHALE: A 3-D MMALE code for unstructured grids

    SciTech Connect

    Peery, J.S.; Budge, K.G.; Wong, M.K.W.; Trucano, T.G.

    1993-08-01

    This paper describes RHALE, a multi-material arbitrary Lagrangian-Eulerian (MMALE) shock physics code. RHALE is the successor to CTH, Sandia`s 3-D Eulerian shock physics code, and will be capable of solving problems that CTH cannot adequately address. We discuss the Lagrangian solid mechanics capabilities of RHALE, which include arbitrary mesh connectivity, superior artificial viscosity, and improved material models. We discuss the MMALE algorithms that have been extended for arbitrary grids in both two- and three-dimensions. The MMALE addition to RHALE provides the accuracy of a Lagrangian code while allowing a calculation to proceed under very large material distortions. Coupling an arbitrary quadrilateral or hexahedral grid to the MMALE solution facilitates modeling of complex shapes with a greatly reduced number of computational cells. RHALE allows regions of a problem to be modeled with Lagrangian, Eulerian or ALE meshes. In addition, regions can switch from Lagrangian to ALE to Eulerian based on user input or mesh distortion. For ALE meshes, new node locations are determined with a variety of element based equipotential schemes. Element quantities are advected with donor, van Leer, or Super-B algorithms. Nodal quantities are advected with the second order SHALE or HIS algorithms. Material interfaces are determined with a modified Young`s high resolution interface tracker or the SLIC algorithm. RHALE has been used to model many problems of interest to the mechanics, hypervelocity impact, and shock physics communities. Results of a sampling of these problems are presented in this paper.

  2. MOM3D/EM-ANIMATE - MOM3D WITH ANIMATION CODE

    NASA Technical Reports Server (NTRS)

    Shaeffer, J. F.

    1994-01-01

    compare surface-current distribution due to various initial excitation directions or electric field orientations. The program can accept up to 50 planes of field data consisting of a grid of 100 by 100 field points. These planes of data are user selectable and can be viewed individually or concurrently. With these preset limits, the program requires 55 megabytes of core memory to run. These limits can be changed in the header files to accommodate the available core memory of an individual workstation. An estimate of memory required can be made as follows: approximate memory in bytes equals (number of nodes times number of surfaces times 14 variables times bytes per word, typically 4 bytes per floating point) plus (number of field planes times number of nodes per plane times 21 variables times bytes per word). This gives the approximate memory size required to store the field and surface-current data. The total memory size is approximately 400,000 bytes plus the data memory size. The animation calculations are performed in real time at any user set time step. For Silicon Graphics Workstations that have multiple processors, this program has been optimized to perform these calculations on multiple processors to increase animation rates. The optimized program uses the SGI PFA (Power FORTRAN Accelerator) library. On single processor machines, the parallelization directives are seen as comments to the program and will have no effect on compilation or execution. MOM3D and EM-ANIMATE are written in FORTRAN 77 for interactive or batch execution on SGI series computers running IRIX 3.0 or later. The RAM requirements for these programs vary with the size of the problem being solved. A minimum of 30Mb of RAM is required for execution of EM-ANIMATE; however, the code may be modified to accommodate the available memory of an individual workstation. For EM-ANIMATE, twenty-four bit, double-buffered color capability is suggested, but not required. Sample executables and sample input and

  3. Interface requirements to couple thermal-hydraulic codes to 3D neutronic codes

    SciTech Connect

    Langenbuch, S.; Austregesilo, H.; Velkov, K.

    1997-07-01

    The present situation of thermalhydraulics codes and 3D neutronics codes is briefly described and general considerations for coupling of these codes are discussed. Two different basic approaches of coupling are identified and their relative advantages and disadvantages are discussed. The implementation of the coupling for 3D neutronics codes in the system ATHLET is presented. Meanwhile, this interface is used for coupling three different 3D neutronics codes.

  4. Parallelization of ARC3D with Computer-Aided Tools

    NASA Technical Reports Server (NTRS)

    Jin, Haoqiang; Hribar, Michelle; Yan, Jerry; Saini, Subhash (Technical Monitor)

    1998-01-01

    A series of efforts have been devoted to investigating methods of porting and parallelizing applications quickly and efficiently for new architectures, such as the SCSI Origin 2000 and Cray T3E. This report presents the parallelization of a CFD application, ARC3D, using the computer-aided tools, Cesspools. Steps of parallelizing this code and requirements of achieving better performance are discussed. The generated parallel version has achieved reasonably well performance, for example, having a speedup of 30 for 36 Cray T3E processors. However, this performance could not be obtained without modification of the original serial code. It is suggested that in many cases improving serial code and performing necessary code transformations are important parts for the automated parallelization process although user intervention in many of these parts are still necessary. Nevertheless, development and improvement of useful software tools, such as Cesspools, can help trim down many tedious parallelization details and improve the processing efficiency.

  5. HST3D; a computer code for simulation of heat and solute transport in three-dimensional ground-water flow systems

    USGS Publications Warehouse

    Kipp, K.L.

    1987-01-01

    The Heat- and Soil-Transport Program (HST3D) simulates groundwater flow and associated heat and solute transport in three dimensions. The three governing equations are coupled through the interstitial pore velocity, the dependence of the fluid density on pressure, temperature, the solute-mass fraction , and the dependence of the fluid viscosity on temperature and solute-mass fraction. The solute transport equation is for only a single, solute species with possible linear equilibrium sorption and linear decay. Finite difference techniques are used to discretize the governing equations using a point-distributed grid. The flow-, heat- and solute-transport equations are solved , in turn, after a particle Gauss-reduction scheme is used to modify them. The modified equations are more tightly coupled and have better stability for the numerical solutions. The basic source-sink term represents wells. A complex well flow model may be used to simulate specified flow rate and pressure conditions at the land surface or within the aquifer, with or without pressure and flow rate constraints. Boundary condition types offered include specified value, specified flux, leakage, heat conduction, and approximate free surface, and two types of aquifer influence functions. All boundary conditions can be functions of time. Two techniques are available for solution of the finite difference matrix equations. One technique is a direct-elimination solver, using equations reordered by alternating diagonal planes. The other technique is an iterative solver, using two-line successive over-relaxation. A restart option is available for storing intermediate results and restarting the simulation at an intermediate time with modified boundary conditions. This feature also can be used as protection against computer system failure. Data input and output may be in metric (SI) units or inch-pound units. Output may include tables of dependent variables and parameters, zoned-contour maps, and plots of the

  6. Turbomachinery Heat Transfer and Loss Modeling for 3D Navier-Stokes Codes

    NASA Technical Reports Server (NTRS)

    DeWitt, Kenneth; Ameri, Ali

    2005-01-01

    This report's contents focus on making use of NASA Glenn on-site computational facilities,to develop, validate, and apply models for use in advanced 3D Navier-Stokes Computational Fluid Dynamics (CFD) codes to enhance the capability to compute heat transfer and losses in turbomachiney.

  7. Recent update of the RPLUS2D/3D codes

    NASA Technical Reports Server (NTRS)

    Tsai, Y.-L. Peter

    1991-01-01

    The development of the RPLUS2D/3D codes is summarized. These codes utilize LU algorithms to solve chemical non-equilibrium flows in a body-fitted coordinate system. The motivation behind the development of these codes is the need to numerically predict chemical non-equilibrium flows for the National AeroSpace Plane Program. Recent improvements include vectorization method, blocking algorithms for geometric flexibility, out-of-core storage for large-size problems, and an LU-SW/UP combination for CPU-time efficiency and solution quality.

  8. RELAP5-3D code validation for RBMK phenomena

    SciTech Connect

    Fisher, J.E.

    1999-09-01

    The RELAP5-3D thermal-hydraulic code was assessed against Japanese Safety Experiment Loop (SEL) and Heat Transfer Loop (HTL) tests. These tests were chosen because the phenomena present are applicable to analyses of Russian RBMK reactor designs. The assessment cases included parallel channel flow fluctuation tests at reduced and normal water levels, a channel inlet pipe rupture test, and a high power, density wave oscillation test. The results showed that RELAP5-3D has the capability to adequately represent these RBMK-related phenomena.

  9. RELAP5-3D Code Validation for RBMK Phenomena

    SciTech Connect

    Fisher, James Ebberly

    1999-09-01

    The RELAP5-3D thermal-hydraulic code was assessed against Japanese Safety Experiment Loop (SEL) and Heat Transfer Loop (HTL) tests. These tests were chosen because the phenomena present are applicable to analyses of Russian RBMK reactor designs. The assessment cases included parallel channel flow fluctuation tests at reduced and normal water levels, a channel inlet pipe rupture test, and a high power, density wave oscillation test. The results showed that RELAP5-3D has the capability to adequately represent these RBMK-related phenomena.

  10. CALTRANS: A parallel, deterministic, 3D neutronics code

    SciTech Connect

    Carson, L.; Ferguson, J.; Rogers, J.

    1994-04-01

    Our efforts to parallelize the deterministic solution of the neutron transport equation has culminated in a new neutronics code CALTRANS, which has full 3D capability. In this article, we describe the layout and algorithms of CALTRANS and present performance measurements of the code on a variety of platforms. Explicit implementation of the parallel algorithms of CALTRANS using both the function calls of the Parallel Virtual Machine software package (PVM 3.2) and the Meiko CS-2 tagged message passing library (based on the Intel NX/2 interface) are provided in appendices.

  11. INS3D: An incompressible Navier-Stokes code in generalized three-dimensional coordinates

    NASA Technical Reports Server (NTRS)

    Rogers, S. E.; Kwak, D.; Chang, J. L. C.

    1987-01-01

    The operation of the INS3D code, which computes steady-state solutions to the incompressible Navier-Stokes equations, is described. The flow solver utilizes a pseudocompressibility approach combined with an approximate factorization scheme. This manual describes key operating features to orient new users. This includes the organization of the code, description of the input parameters, description of each subroutine, and sample problems. Details for more extended operations, including possible code modifications, are given in the appendix.

  12. Verification and Validation of the k-kL Turbulence Model in FUN3D and CFL3D Codes

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, Khaled S.; Carlson, Jan-Renee; Rumsey, Christopher L.

    2015-01-01

    The implementation of the k-kL turbulence model using multiple computational uid dy- namics (CFD) codes is reported herein. The k-kL model is a two-equation turbulence model based on Abdol-Hamid's closure and Menter's modi cation to Rotta's two-equation model. Rotta shows that a reliable transport equation can be formed from the turbulent length scale L, and the turbulent kinetic energy k. Rotta's equation is well suited for term-by-term mod- eling and displays useful features compared to other two-equation models. An important di erence is that this formulation leads to the inclusion of higher-order velocity derivatives in the source terms of the scale equations. This can enhance the ability of the Reynolds- averaged Navier-Stokes (RANS) solvers to simulate unsteady ows. The present report documents the formulation of the model as implemented in the CFD codes Fun3D and CFL3D. Methodology, veri cation and validation examples are shown. Attached and sepa- rated ow cases are documented and compared with experimental data. The results show generally very good comparisons with canonical and experimental data, as well as matching results code-to-code. The results from this formulation are similar or better than results using the SST turbulence model.

  13. 3D seismic imaging on massively parallel computers

    SciTech Connect

    Womble, D.E.; Ober, C.C.; Oldfield, R.

    1997-02-01

    The ability to image complex geologies such as salt domes in the Gulf of Mexico and thrusts in mountainous regions is a key to reducing the risk and cost associated with oil and gas exploration. Imaging these structures, however, is computationally expensive. Datasets can be terabytes in size, and the processing time required for the multiple iterations needed to produce a velocity model can take months, even with the massively parallel computers available today. Some algorithms, such as 3D, finite-difference, prestack, depth migration remain beyond the capacity of production seismic processing. Massively parallel processors (MPPs) and algorithms research are the tools that will enable this project to provide new seismic processing capabilities to the oil and gas industry. The goals of this work are to (1) develop finite-difference algorithms for 3D, prestack, depth migration; (2) develop efficient computational approaches for seismic imaging and for processing terabyte datasets on massively parallel computers; and (3) develop a modular, portable, seismic imaging code.

  14. Development of the PARVMEC Code for Rapid Analysis of 3D MHD Equilibrium

    NASA Astrophysics Data System (ADS)

    Seal, Sudip; Hirshman, Steven; Cianciosa, Mark; Wingen, Andreas; Unterberg, Ezekiel; Wilcox, Robert; ORNL Collaboration

    2015-11-01

    The VMEC three-dimensional (3D) MHD equilibrium has been used extensively for designing stellarator experiments and analyzing experimental data in such strongly 3D systems. Recent applications of VMEC include 2D systems such as tokamaks (in particular, the D3D experiment), where application of very small (delB/B ~ 10-3) 3D resonant magnetic field perturbations render the underlying assumption of axisymmetry invalid. In order to facilitate the rapid analysis of such equilibria (for example, for reconstruction purposes), we have undertaken the task of parallelizing the VMEC code (PARVMEC) to produce a scalable and temporally rapidly convergent equilibrium code for use on parallel distributed memory platforms. The parallelization task naturally splits into three distinct parts 1) radial surfaces in the fixed-boundary part of the calculation; 2) two 2D angular meshes needed to compute the Green's function integrals over the plasma boundary for the free-boundary part of the code; and 3) block tridiagonal matrix needed to compute the full (3D) pre-conditioner near the final equilibrium state. Preliminary results show that scalability is achieved for tasks 1 and 3, with task 2 still nearing completion. The impact of this work on the rapid reconstruction of D3D plasmas using PARVMEC in the V3FIT code will be discussed. Work supported by U.S. DOE under Contract DE-AC05-00OR22725 with UT-Battelle, LLC.

  15. Depth-controlled 3D TV image coding

    NASA Astrophysics Data System (ADS)

    Chiari, Armando; Ciciani, Bruno; Romero, Milton; Rossi, Ricardo

    1998-04-01

    Conventional 3D-TV codecs processing one down-compatible (either left, or right) channel may optionally include the extraction of the disparity field associated with the stereo-pairs to support the coding of the complementary channel. A two-fold improvement over such approaches is proposed in this paper by exploiting 3D features retained in the stereo-pairs to reduce the redundancies in both channels, and according to their visual sensitiveness. Through an a-priori disparity field analysis, our coding scheme separates a region of interest from the foreground/background in the volume space reproduced in order to code them selectively based on their visual relevance. Such a region of interest is here identified as the one which is focused by the shooting device. By suitably scaling the DCT coefficient n such a way that precision is reduced for the image blocks lying on less relevant areas, our approach aims at reducing the signal energy in the background/foreground patterns, while retaining finer details on the more relevant image portions. From an implementation point of view, it is worth noticing that the system proposed keeps its surplus processing power on the encoder side only. Simulation results show such improvements as a better image quality for a given transmission bit rate, or a graceful quality degradation of the reconstructed images with decreasing data-rates.

  16. Numerical modelling of gravel unconstrained flow experiments with the DAN3D and RASH3D codes

    NASA Astrophysics Data System (ADS)

    Sauthier, Claire; Pirulli, Marina; Pisani, Gabriele; Scavia, Claudio; Labiouse, Vincent

    2015-12-01

    Landslide continuum dynamic models have improved considerably in the last years, but a consensus on the best method of calibrating the input resistance parameter values for predictive analyses has not yet emerged. In the present paper, numerical simulations of a series of laboratory experiments performed at the Laboratory for Rock Mechanics of the EPF Lausanne were undertaken with the RASH3D and DAN3D numerical codes. They aimed at analysing the possibility to use calibrated ranges of parameters (1) in a code different from that they were obtained from and (2) to simulate potential-events made of a material with the same characteristics as back-analysed past-events, but involving a different volume and propagation path. For this purpose, one of the four benchmark laboratory tests was used as past-event to calibrate the dynamic basal friction angle assuming a Coulomb-type behaviour of the sliding mass, and this back-analysed value was then used to simulate the three other experiments, assumed as potential-events. The computational findings show good correspondence with experimental results in terms of characteristics of the final deposits (i.e., runout, length and width). Furthermore, the obtained best fit values of the dynamic basal friction angle for the two codes turn out to be close to each other and within the range of values measured with pseudo-dynamic tilting tests.

  17. Aerofoil characteristics from 3D CFD rotor computations

    NASA Astrophysics Data System (ADS)

    Johansen, Jeppe; Sørensen, Niels N.

    2004-10-01

    This article describes a method for extracting aerofoil characteristics from 3D computational fluid dynamics (CFD) rotor computations. Based on the knowledge of the detailed flow in the rotor plane, the average sectional axial induction is determined for each wind speed. Based on this, the local angle of attack is determined when knowing the rotational speed and the local blade twist angle. The local aerofoil characteristics, i.e. Cl and Cd, are then computed from the forces acting on the blade. The extracted Cl and Cd are used in a standard blade element momentum (BEM) code, where no corrections are made for the rotational augmentation of forces or for the tip effect, since these are directly included in the aerofoil characteristics. Three stall-regulated wind turbine rotors are used as test cases. The computed mechanical power is overpredicted at high wind speeds using steady Reynolds-averaged Navier-Stokes computations, but using advanced turbulence models, e.g. detached eddy simulation, or a transition prediction model improves the computations. The agreement between the mechanical power (or low-speed shaft torque) predicted by CFD and BEM is good, even though a small but consistent difference in induction prediction is present. With the proposed method and a sufficiently accurate CFD computation it is possible to obtain aerofoil characteristics from a given wind turbine design without using empirical stall corrections models. Alternatively, new correction models can be derived using the extracted aerofoil characteristics. Copyright

  18. User Guide for the R5EXEC Coupling Interface in the RELAP5-3D Code

    SciTech Connect

    Forsmann, J. Hope; Weaver, Walter L.

    2015-04-01

    This report describes the R5EXEC coupling interface in the RELAP5-3D computer code from the users perspective. The information in the report is intended for users who want to couple RELAP5-3D to other thermal-hydraulic, neutron kinetics, or control system simulation codes.

  19. Code portability and data management considerations in the SAS3D LMFBR accident-analysis code

    SciTech Connect

    Dunn, F.E.

    1981-01-01

    The SAS3D code was produced from a predecessor in order to reduce or eliminate interrelated problems in the areas of code portability, the large size of the code, inflexibility in the use of memory and the size of cases that can be run, code maintenance, and running speed. Many conventional solutions, such as variable dimensioning, disk storage, virtual memory, and existing code-maintenance utilities were not feasible or did not help in this case. A new data management scheme was developed, coding standards and procedures were adopted, special machine-dependent routines were written, and a portable source code processing code was written. The resulting code is quite portable, quite flexible in the use of memory and the size of cases that can be run, much easier to maintain, and faster running. SAS3D is still a large, long running code that only runs well if sufficient main memory is available.

  20. Extending ALE3D, an Arbitrarily Connected hexahedral 3D Code, to Very Large Problem Size (U)

    SciTech Connect

    Nichols, A L

    2010-12-15

    As the number of compute units increases on the ASC computers, the prospect of running previously unimaginably large problems is becoming a reality. In an arbitrarily connected 3D finite element code, like ALE3D, one must provide a unique identification number for every node, element, face, and edge. This is required for a number of reasons, including defining the global connectivity array required for domain decomposition, identifying appropriate communication patterns after domain decomposition, and determining the appropriate load locations for implicit solvers, for example. In most codes, the unique identification number is defined as a 32-bit integer. Thus the maximum value available is 231, or roughly 2.1 billion. For a 3D geometry consisting of arbitrarily connected hexahedral elements, there are approximately 3 faces for every element, and 3 edges for every node. Since the nodes and faces need id numbers, using 32-bit integers puts a hard limit on the number of elements in a problem at roughly 700 million. The first solution to this problem would be to replace 32-bit signed integers with 32-bit unsigned integers. This would increase the maximum size of a problem by a factor of 2. This provides some head room, but almost certainly not one that will last long. Another solution would be to replace all 32-bit int declarations with 64-bit long long declarations. (long is either a 32-bit or a 64-bit integer, depending on the OS). The problem with this approach is that there are only a few arrays that actually need to extended size, and thus this would increase the size of the problem unnecessarily. In a future computing environment where CPUs are abundant but memory relatively scarce, this is probably the wrong approach. Based on these considerations, we have chosen to replace only the global identifiers with the appropriate 64-bit integer. The problem with this approach is finding all the places where data that is specified as a 32-bit integer needs to be

  1. FARGO3D: A New GPU-oriented MHD Code

    NASA Astrophysics Data System (ADS)

    Benítez-Llambay, Pablo; Masset, Frédéric S.

    2016-03-01

    We present the FARGO3D code, recently publicly released. It is a magnetohydrodynamics code developed with special emphasis on the physics of protoplanetary disks and planet-disk interactions, and parallelized with MPI. The hydrodynamics algorithms are based on finite-difference upwind, dimensionally split methods. The magnetohydrodynamics algorithms consist of the constrained transport method to preserve the divergence-free property of the magnetic field to machine accuracy, coupled to a method of characteristics for the evaluation of electromotive forces and Lorentz forces. Orbital advection is implemented, and an N-body solver is included to simulate planets or stars interacting with the gas. We present our implementation in detail and present a number of widely known tests for comparison purposes. One strength of FARGO3D is that it can run on either graphical processing units (GPUs) or central processing units (CPUs), achieving large speed-up with respect to CPU cores. We describe our implementation choices, which allow a user with no prior knowledge of GPU programming to develop new routines for CPUs, and have them translated automatically for GPUs.

  2. Three-dimensional parallel UNIPIC-3D code for simulations of high-power microwave devices

    NASA Astrophysics Data System (ADS)

    Wang, Jianguo; Chen, Zaigao; Wang, Yue; Zhang, Dianhui; Liu, Chunliang; Li, Yongdong; Wang, Hongguang; Qiao, Hailiang; Fu, Meiyan; Yuan, Yuan

    2010-07-01

    This paper introduces a self-developed, three-dimensional parallel fully electromagnetic particle simulation code UNIPIC-3D. In this code, the electromagnetic fields are updated using the second-order, finite-difference time-domain method, and the particles are moved using the relativistic Newton-Lorentz force equation. The electromagnetic field and particles are coupled through the current term in Maxwell's equations. Two numerical examples are used to verify the algorithms adopted in this code, numerical results agree well with theoretical ones. This code can be used to simulate the high-power microwave (HPM) devices, such as the relativistic backward wave oscillator, coaxial vircator, and magnetically insulated line oscillator, etc. UNIPIC-3D is written in the object-oriented C++ language and can be run on a variety of platforms including WINDOWS, LINUX, and UNIX. Users can use the graphical user's interface to create the complex geometric structures of the simulated HPM devices, which can be automatically meshed by UNIPIC-3D code. This code has a powerful postprocessor which can display the electric field, magnetic field, current, voltage, power, spectrum, momentum of particles, etc. For the sake of comparison, the results computed by using the two-and-a-half-dimensional UNIPIC code are also provided for the same parameters of HPM devices, the numerical results computed from these two codes agree well with each other.

  3. CASTLE3D - A Computer Aided System for Labelling Archaeological Excavations in 3D

    NASA Astrophysics Data System (ADS)

    Houshiar, H.; Borrmann, D.; Elseberg, J.; Nüchter, A.; Näth, F.; Winkler, S.

    2015-08-01

    Documentation of archaeological excavation sites with conventional methods and tools such as hand drawings, measuring tape and archaeological notes is time consuming. This process is prone to human errors and the quality of the documentation depends on the qualification of the archaeologist on site. Use of modern technology and methods in 3D surveying and 3D robotics facilitate and improve this process. Computer-aided systems and databases improve the documentation quality and increase the speed of data acquisition. 3D laser scanning is the state of the art in modelling archaeological excavation sites, historical sites and even entire cities or landscapes. Modern laser scanners are capable of data acquisition of up to 1 million points per second. This provides a very detailed 3D point cloud of the environment. 3D point clouds and 3D models of an excavation site provide a better representation of the environment for the archaeologist and for documentation. The point cloud can be used both for further studies on the excavation and for the presentation of results. This paper introduces a Computer aided system for labelling archaeological excavations in 3D (CASTLE3D). Consisting of a set of tools for recording and georeferencing the 3D data from an excavation site, CASTLE3D is a novel documentation approach in industrial archaeology. It provides a 2D and 3D visualisation of the data and an easy-to-use interface that enables the archaeologist to select regions of interest and to interact with the data in both representations. The 2D visualisation and a 3D orthogonal view of the data provide cuts of the environment that resemble the traditional hand drawings. The 3D perspective view gives a realistic view of the environment. CASTLE3D is designed as an easy-to-use on-site semantic mapping tool for archaeologists. Each project contains a predefined set of semantic information that can be used to label findings in the data. Multiple regions of interest can be joined under

  4. Computational 3-D inversion for seismic exploration

    SciTech Connect

    Gavrilov, E.M.; Forslund, D.W.; Fehler, M.C.

    1997-10-01

    This is the final report of a four-month, Laboratory Directed Research and Development (LDRD) project carried out at the Los Alamos National Laboratory (LANL). There is a great need for a new and effective technology with a wide scope of industrial applications to investigate media internal properties of which can be explored only from the backscattered data. The project was dedicated to the development of a three-dimensional computational inversion tool for seismic exploration. The new computational concept of the inversion algorithm was suggested. The goal of the project was to prove the concept and the practical validity of the algorithm for petroleum exploration.

  5. RELAP5-3D Code for Supercritical-Pressure Light-Water-Cooled Reactors

    SciTech Connect

    Riemke, Richard Allan; Davis, Cliff Bybee; Schultz, Richard Raphael

    2003-04-01

    The RELAP5-3D computer program has been improved for analysis of supercritical-pressure, light-water-cooled reactors. Several code modifications were implemented to correct code execution failures. Changes were made to the steam table generation, steam table interpolation, metastable states, interfacial heat transfer coefficients, and transport properties (viscosity and thermal conductivity). The code modifications now allow the code to run slow transients above the critical pressure as well as blowdown transients (modified Edwards pipe and modified existing pressurized water reactor model) that pass near the critical point.

  6. 3D finite-difference seismic migration with parallel computers

    SciTech Connect

    Ober, C.C.; Gjertsen, R.; Minkoff, S.; Womble, D.E.

    1998-11-01

    The ability to image complex geologies such as salt domes in the Gulf of Mexico and thrusts in mountainous regions is essential for reducing the risk associated with oil exploration. Imaging these structures, however, is computationally expensive as datasets can be terabytes in size. Traditional ray-tracing migration methods cannot handle complex velocity variations commonly found near such salt structures. Instead the authors use the full 3D acoustic wave equation, discretized via a finite difference algorithm. They reduce the cost of solving the apraxial wave equation by a number of numerical techniques including the method of fractional steps and pipelining the tridiagonal solves. The imaging code, Salvo, uses both frequency parallelism (generally 90% efficient) and spatial parallelism (65% efficient). Salvo has been tested on synthetic and real data and produces clear images of the subsurface even beneath complicated salt structures.

  7. ATHENA 3D: A finite element code for ultrasonic wave propagation

    NASA Astrophysics Data System (ADS)

    Rose, C.; Rupin, F.; Fouquet, T.; Chassignole, B.

    2014-04-01

    The understanding of wave propagation phenomena requires use of robust numerical models. 3D finite element (FE) models are generally prohibitively time consuming. However, advances in computing processor speed and memory allow them to be more and more competitive. In this context, EDF R&D developed the 3D version of the well-validated FE code ATHENA2D. The code is dedicated to the simulation of wave propagation in all kinds of elastic media and in particular, heterogeneous and anisotropic materials like welds. It is based on solving elastodynamic equations in the calculation zone expressed in terms of stress and particle velocities. The particularity of the code relies on the fact that the discretization of the calculation domain uses a Cartesian regular 3D mesh while the defect of complex geometry can be described using a separate (2D) mesh using the fictitious domains method. This allows combining the rapidity of regular meshes computation with the capability of modelling arbitrary shaped defects. Furthermore, the calculation domain is discretized with a quasi-explicit time evolution scheme. Thereby only local linear systems of small size have to be solved. The final step to reduce the computation time relies on the fact that ATHENA3D has been parallelized and adapted to the use of HPC resources. In this paper, the validation of the 3D FE model is discussed. A cross-validation of ATHENA 3D and CIVA is proposed for several inspection configurations. The performances in terms of calculation time are also presented in the cases of both local computer and computation cluster use.

  8. MOM3D method of moments code theory manual

    NASA Astrophysics Data System (ADS)

    Shaeffer, John F.

    1992-03-01

    MOM3D is a FORTRAN algorithm that solves Maxwell's equations as expressed via the electric field integral equation for the electromagnetic response of open or closed three dimensional surfaces modeled with triangle patches. Two joined triangles (couples) form the vector current unknowns for the surface. Boundary conditions are for perfectly conducting or resistive surfaces. The impedance matrix represents the fundamental electromagnetic interaction of the body with itself. A variety of electromagnetic analysis options are possible once the impedance matrix is computed including backscatter radar cross section (RCS), bistatic RCS, antenna pattern prediction for user specified body voltage excitation ports, RCS image projection showing RCS scattering center locations, surface currents excited on the body as induced by specified plane wave excitation, and near field computation for the electric field on or near the body.

  9. MOM3D method of moments code theory manual

    NASA Technical Reports Server (NTRS)

    Shaeffer, John F.

    1992-01-01

    MOM3D is a FORTRAN algorithm that solves Maxwell's equations as expressed via the electric field integral equation for the electromagnetic response of open or closed three dimensional surfaces modeled with triangle patches. Two joined triangles (couples) form the vector current unknowns for the surface. Boundary conditions are for perfectly conducting or resistive surfaces. The impedance matrix represents the fundamental electromagnetic interaction of the body with itself. A variety of electromagnetic analysis options are possible once the impedance matrix is computed including backscatter radar cross section (RCS), bistatic RCS, antenna pattern prediction for user specified body voltage excitation ports, RCS image projection showing RCS scattering center locations, surface currents excited on the body as induced by specified plane wave excitation, and near field computation for the electric field on or near the body.

  10. 3D Vectorial Time Domain Computational Integrated Photonics

    SciTech Connect

    Kallman, J S; Bond, T C; Koning, J M; Stowell, M L

    2007-02-16

    The design of integrated photonic structures poses considerable challenges. 3D-Time-Domain design tools are fundamental in enabling technologies such as all-optical logic, photonic bandgap sensors, THz imaging, and fast radiation diagnostics. Such technologies are essential to LLNL and WFO sponsors for a broad range of applications: encryption for communications and surveillance sensors (NSA, NAI and IDIV/PAT); high density optical interconnects for high-performance computing (ASCI); high-bandwidth instrumentation for NIF diagnostics; micro-sensor development for weapon miniaturization within the Stockpile Stewardship and DNT programs; and applications within HSO for CBNP detection devices. While there exist a number of photonics simulation tools on the market, they primarily model devices of interest to the communications industry. We saw the need to extend our previous software to match the Laboratory's unique emerging needs. These include modeling novel material effects (such as those of radiation induced carrier concentrations on refractive index) and device configurations (RadTracker bulk optics with radiation induced details, Optical Logic edge emitting lasers with lateral optical inputs). In addition we foresaw significant advantages to expanding our own internal simulation codes: parallel supercomputing could be incorporated from the start, and the simulation source code would be accessible for modification and extension. This work addressed Engineering's Simulation Technology Focus Area, specifically photonics. Problems addressed from the Engineering roadmap of the time included modeling the Auston switch (an important THz source/receiver), modeling Vertical Cavity Surface Emitting Lasers (VCSELs, which had been envisioned as part of fast radiation sensors), and multi-scale modeling of optical systems (for a variety of applications). We proposed to develop novel techniques to numerically solve the 3D multi-scale propagation problem for both the microchip

  11. Description of a parallel, 3D, finite element, hydrodynamics-diffusion code

    SciTech Connect

    Milovich, J L; Prasad, M K; Shestakov, A I

    1999-04-11

    We describe a parallel, 3D, unstructured grid finite element, hydrodynamic diffusion code for inertial confinement fusion (ICF) applications and the ancillary software used to run it. The code system is divided into two entities, a controller and a stand-alone physics code. The code system may reside on different computers; the controller on the user's workstation and the physics code on a supercomputer. The physics code is composed of separate hydrodynamic, equation-of-state, laser energy deposition, heat conduction, and radiation transport packages and is parallelized for distributed memory architectures. For parallelization, a SPMD model is adopted; the domain is decomposed into a disjoint collection of subdomains, one per processing element (PE). The PEs communicate using MPI. The code is used to simulate the hydrodynamic implosion of a spherical bubble.

  12. 3D Structured Grid Generation Codes for Turbomachinery

    NASA Technical Reports Server (NTRS)

    Loellbach, James; Tsung, Fu-Lin

    1999-01-01

    This report describes the research tasks during the past year. The research was mainly in the area of computational grid generation in support of CFD analyses of turbomachinery components. In addition to the grid generation work, a numerical simulation was obtained for the flow through a centrifugal gas compressor using an unstructured Navier-Stokes solver. Other tasks involved many different turbomachinery component analyses. These analyses were performed for NASA projects or for industrial applications. The work includes both centrifugal and axial machines, single and multiple blade rows, and steady and unsteady analyses. Over the past five years, a set of structured grid generation codes were developed that allow grids to be obtained fairly quickly for the large majority of configurations we encounter. These codes do not comprise a generalized grid generation package; they are noninteractive codes specifically designed for turbomachinery blade row geometries. But because of this limited scope, the codes are small, fast, and portable, and they can be run in the batch mode on small workstations. During the past year, these programs were used to generate computational grids were modified for a wide variety of configurations. In particular, the codes or wrote supplementary codes to improve our grid generation capabilities for multiple blade row configurations. This involves generating separate grids for each blade row, and then making them match and overlap by a few grid points at their common interface so that fluid properties are communicated across the interface. Unsteady rotor/stator analyses were performed for an axial turbine, a centrifugal compressor, and a centrifugal pump. Steady-state single-blade-row analyses were made for a study of blade sweep in transonic compressors. There was also cooperation on the application of an unstructured Navier-Stokes solver for turbomachinery flow simulations. In particular, the unstructured solver was used to analyze the

  13. Parallel algorithm for computing 3-D reachable workspaces

    NASA Astrophysics Data System (ADS)

    Alameldin, Tarek K.; Sobh, Tarek M.

    1992-03-01

    The problem of computing the 3-D workspace for redundant articulated chains has applications in a variety of fields such as robotics, computer aided design, and computer graphics. The computational complexity of the workspace problem is at least NP-hard. The recent advent of parallel computers has made practical solutions for the workspace problem possible. Parallel algorithms for computing the 3-D workspace for redundant articulated chains with joint limits are presented. The first phase of these algorithms computes workspace points in parallel. The second phase uses workspace points that are computed in the first phase and fits a 3-D surface around the volume that encompasses the workspace points. The second phase also maps the 3- D points into slices, uses region filling to detect the holes and voids in the workspace, extracts the workspace boundary points by testing the neighboring cells, and tiles the consecutive contours with triangles. The proposed algorithms are efficient for computing the 3-D reachable workspace for articulated linkages, not only those with redundant degrees of freedom but also those with joint limits.

  14. IM3D: A parallel Monte Carlo code for efficient simulations of primary radiation displacements and damage in 3D geometry

    PubMed Central

    Li, Yong Gang; Yang, Yang; Short, Michael P.; Ding, Ze Jun; Zeng, Zhi; Li, Ju

    2015-01-01

    SRIM-like codes have limitations in describing general 3D geometries, for modeling radiation displacements and damage in nanostructured materials. A universal, computationally efficient and massively parallel 3D Monte Carlo code, IM3D, has been developed with excellent parallel scaling performance. IM3D is based on fast indexing of scattering integrals and the SRIM stopping power database, and allows the user a choice of Constructive Solid Geometry (CSG) or Finite Element Triangle Mesh (FETM) method for constructing 3D shapes and microstructures. For 2D films and multilayers, IM3D perfectly reproduces SRIM results, and can be ∼102 times faster in serial execution and > 104 times faster using parallel computation. For 3D problems, it provides a fast approach for analyzing the spatial distributions of primary displacements and defect generation under ion irradiation. Herein we also provide a detailed discussion of our open-source collision cascade physics engine, revealing the true meaning and limitations of the “Quick Kinchin-Pease” and “Full Cascades” options. The issues of femtosecond to picosecond timescales in defining displacement versus damage, the limitation of the displacements per atom (DPA) unit in quantifying radiation damage (such as inadequacy in quantifying degree of chemical mixing), are discussed. PMID:26658477

  15. IM3D: A parallel Monte Carlo code for efficient simulations of primary radiation displacements and damage in 3D geometry

    NASA Astrophysics Data System (ADS)

    Li, Yong Gang; Yang, Yang; Short, Michael P.; Ding, Ze Jun; Zeng, Zhi; Li, Ju

    2015-12-01

    SRIM-like codes have limitations in describing general 3D geometries, for modeling radiation displacements and damage in nanostructured materials. A universal, computationally efficient and massively parallel 3D Monte Carlo code, IM3D, has been developed with excellent parallel scaling performance. IM3D is based on fast indexing of scattering integrals and the SRIM stopping power database, and allows the user a choice of Constructive Solid Geometry (CSG) or Finite Element Triangle Mesh (FETM) method for constructing 3D shapes and microstructures. For 2D films and multilayers, IM3D perfectly reproduces SRIM results, and can be ∼102 times faster in serial execution and > 104 times faster using parallel computation. For 3D problems, it provides a fast approach for analyzing the spatial distributions of primary displacements and defect generation under ion irradiation. Herein we also provide a detailed discussion of our open-source collision cascade physics engine, revealing the true meaning and limitations of the “Quick Kinchin-Pease” and “Full Cascades” options. The issues of femtosecond to picosecond timescales in defining displacement versus damage, the limitation of the displacements per atom (DPA) unit in quantifying radiation damage (such as inadequacy in quantifying degree of chemical mixing), are discussed.

  16. Software-based geometry operations for 3D computer graphics

    NASA Astrophysics Data System (ADS)

    Sima, Mihai; Iancu, Daniel; Glossner, John; Schulte, Michael; Mamidi, Suman

    2006-02-01

    In order to support a broad dynamic range and a high degree of precision, many of 3D renderings fundamental algorithms have been traditionally performed in floating-point. However, fixed-point data representation is preferable over floating-point representation in graphics applications on embedded devices where performance is of paramount importance, while the dynamic range and precision requirements are limited due to the small display sizes (current PDA's are 640 × 480 (VGA), while cell-phones are even smaller). In this paper we analyze the efficiency of a CORDIC-augmented Sandbridge processor when implementing a vertex processor in software using fixed-point arithmetic. A CORDIC-based solution for vertex processing exhibits a number of advantages over classical Multiply-and-Acumulate solutions. First, since a single primitive is used to describe the computation, the code can easily be vectorized and multithreaded, and thus fits the major Sandbridge architectural features. Second, since a CORDIC iteration consists of only a shift operation followed by an addition, the computation may be deeply pipelined. Initially, we outline the Sandbridge architecture extension which encompasses a CORDIC functional unit and the associated instructions. Then, we consider rigid-body rotation, lighting, exponentiation, vector normalization, and perspective division (which are some of the most important data-intensive 3D graphics kernels) and propose a scheme to implement them on the CORDIC-augmented Sandbridge processor. Preliminary results indicate that the performance improvement within the extended instruction set ranges from 3× to 10× (with the exception of rigid body rotation).

  17. Development of Unsteady Aerodynamic and Aeroelastic Reduced-Order Models Using the FUN3D Code

    NASA Technical Reports Server (NTRS)

    Silva, Walter A.; Vatsa, Veer N.; Biedron, Robert T.

    2009-01-01

    Recent significant improvements to the development of CFD-based unsteady aerodynamic reduced-order models (ROMs) are implemented into the FUN3D unstructured flow solver. These improvements include the simultaneous excitation of the structural modes of the CFD-based unsteady aerodynamic system via a single CFD solution, minimization of the error between the full CFD and the ROM unsteady aero- dynamic solution, and computation of a root locus plot of the aeroelastic ROM. Results are presented for a viscous version of the two-dimensional Benchmark Active Controls Technology (BACT) model and an inviscid version of the AGARD 445.6 aeroelastic wing using the FUN3D code.

  18. Current status of the WHAMS-3D code

    SciTech Connect

    Belytschko, T.; Kennedy, J.M.

    1987-03-01

    The program WHAMS-3D is an explicit time integration program which can be used for frames, shells, plates and continua in three dimensions. Both material nonlinearities due to elasto-plastic behavior and geometric nonlinearities due to large displacements can be treated. The program has been developed to serve as a test-bed for research into methods for nonlinear structural dynamics, but it can also be used for production calculations. The program is quite compact, so it can be coupled with other codes. The program employs a finite element format, so that is possesses considerable versatility in modeling complex shapes and boundary conditions. The element library consists of the following: quadrilateral and triangular plate-shell elements, a beam element, a spring element and a hexahedral continuum element. In addition, a rigid linkage is included which permits the efficient modeling of very stiff portions of a structure, such as the bottom ring of a core barrel. In a rigid linkage, the motion of a master node defines the motion of all slave nodes linked to the master node. This option is also useful for eccentrically connected elements where the modlines of the connected elements do not coincide, as for example, in stiffeners. Time integration is performed by the central difference method. The mass matrix is diagonal (lumped), so no equations need be solved. Different time steps can be used in different parts of the mesh.

  19. 3D unstructured-mesh radiation transport codes

    SciTech Connect

    Morel, J.

    1997-12-31

    Three unstructured-mesh radiation transport codes are currently being developed at Los Alamos National Laboratory. The first code is ATTILA, which uses an unstructured tetrahedral mesh in conjunction with standard Sn (discrete-ordinates) angular discretization, standard multigroup energy discretization, and linear-discontinuous spatial differencing. ATTILA solves the standard first-order form of the transport equation using source iteration in conjunction with diffusion-synthetic acceleration of the within-group source iterations. DANTE is designed to run primarily on workstations. The second code is DANTE, which uses a hybrid finite-element mesh consisting of arbitrary combinations of hexahedra, wedges, pyramids, and tetrahedra. DANTE solves several second-order self-adjoint forms of the transport equation including the even-parity equation, the odd-parity equation, and a new equation called the self-adjoint angular flux equation. DANTE also offers three angular discretization options: $S{_}n$ (discrete-ordinates), $P{_}n$ (spherical harmonics), and $SP{_}n$ (simplified spherical harmonics). DANTE is designed to run primarily on massively parallel message-passing machines, such as the ASCI-Blue machines at LANL and LLNL. The third code is PERICLES, which uses the same hybrid finite-element mesh as DANTE, but solves the standard first-order form of the transport equation rather than a second-order self-adjoint form. DANTE uses a standard $S{_}n$ discretization in angle in conjunction with trilinear-discontinuous spatial differencing, and diffusion-synthetic acceleration of the within-group source iterations. PERICLES was initially designed to run on workstations, but a version for massively parallel message-passing machines will be built. The three codes will be described in detail and computational results will be presented.

  20. Peach Bottom 2 Turbine Trip Simulation Using TRAC-BF1/COS3D, a Best-Estimate Coupled 3-D Core and Thermal-Hydraulic Code System

    SciTech Connect

    Ui, Atsushi; Miyaji, Takamasa

    2004-10-15

    The best-estimate coupled three-dimensional (3-D) core and thermal-hydraulic code system TRAC-BF1/COS3D has been developed. COS3D, based on a modified one-group neutronic model, is a 3-D core simulator used for licensing analyses and core management of commercial boiling water reactor (BWR) plants in Japan. TRAC-BF1 is a plant simulator based on a two-fluid model. TRAC-BF1/COS3D is a coupled system of both codes, which are connected using a parallel computing tool. This code system was applied to the OECD/NRC BWR Turbine Trip Benchmark. Since the two-group cross-section tables are provided by the benchmark team, COS3D was modified to apply to this specification. Three best-estimate scenarios and four hypothetical scenarios were calculated using this code system. In the best-estimate scenario, the predicted core power with TRAC-BF1/COS3D is slightly underestimated compared with the measured data. The reason seems to be a slight difference in the core boundary conditions, that is, pressure changes and the core inlet flow distribution, because the peak in this analysis is sensitive to them. However, the results of this benchmark analysis show that TRAC-BF1/COS3D gives good precision for the prediction of the actual BWR transient behavior on the whole. Furthermore, the results with the modified one-group model and the two-group model were compared to verify the application of the modified one-group model to this benchmark. This comparison shows that the results of the modified one-group model are appropriate and sufficiently precise.

  1. RELAP5-3D Code Includes Athena Features and Models

    SciTech Connect

    Richard A. Riemke; Cliff B. Davis; Richard R. Schultz

    2006-07-01

    Version 2.3 of the RELAP5-3D computer program includes all features and models previously available only in the ATHENA version of the code. These include the addition of new working fluids (i.e., ammonia, blood, carbon dioxide, glycerol, helium, hydrogen, lead-bismuth, lithium, lithium-lead, nitrogen, potassium, sodium, and sodium-potassium) and a magnetohydrodynamic model that expands the capability of the code to model many more thermal-hydraulic systems. In addition to the new working fluids along with the standard working fluid water, one or more noncondensable gases (e.g., air, argon, carbon dioxide, carbon monoxide, helium, hydrogen, krypton, nitrogen, oxygen, sf6, xenon) can be specified as part of the vapor/gas phase of the working fluid. These noncondensable gases were in previous versions of RELAP5- 3D. Recently four molten salts have been added as working fluids to RELAP5-3D Version 2.4, which has had limited release. These molten salts will be in RELAP5-3D Version 2.5, which will have a general release like RELAP5-3D Version 2.3. Applications that use these new features and models are discussed in this paper.

  2. RELAP5-3D Code Includes ATHENA Features and Models

    SciTech Connect

    Riemke, Richard A.; Davis, Cliff B.; Schultz, Richard R.

    2006-07-01

    Version 2.3 of the RELAP5-3D computer program includes all features and models previously available only in the ATHENA version of the code. These include the addition of new working fluids (i.e., ammonia, blood, carbon dioxide, glycerol, helium, hydrogen, lead-bismuth, lithium, lithium-lead, nitrogen, potassium, sodium, and sodium-potassium) and a magnetohydrodynamic model that expands the capability of the code to model many more thermal-hydraulic systems. In addition to the new working fluids along with the standard working fluid water, one or more noncondensable gases (e.g., air, argon, carbon dioxide, carbon monoxide, helium, hydrogen, krypton, nitrogen, oxygen, SF{sub 6}, xenon) can be specified as part of the vapor/gas phase of the working fluid. These noncondensable gases were in previous versions of RELAP5-3D. Recently four molten salts have been added as working fluids to RELAP5-3D Version 2.4, which has had limited release. These molten salts will be in RELAP5-3D Version 2.5, which will have a general release like RELAP5-3D Version 2.3. Applications that use these new features and models are discussed in this paper. (authors)

  3. The computation of steady 3-D separated flows over aerodynamic bodies at incidence and yaw

    NASA Technical Reports Server (NTRS)

    Pulliam, T. H.; Pan, D.

    1986-01-01

    This paper describes the implementation of a general purpose 3-D NS code and its application to simulated 3-D separated vortical flows over aerodynamic bodies. The thin-layer Reynolds-averaged NS equations are solved by an implicit approximate factorization scheme. The pencil data structure enables the code to run on very fine grids using only limited incore memories. Solutions of a low subsonic flow over an inclined ellipsoid are compared with experimental data to validate the code. Transonic flows over a yawed elliptical wing at incidence are computed and separations occurred at different yaw angles are discussed.

  4. The Transient 3-D Transport Coupled Code TORT-TD/ATTICA3D for High-Fidelity Pebble-Bed HTGR Analyses

    NASA Astrophysics Data System (ADS)

    Seubert, Armin; Sureda, Antonio; Lapins, Janis; Bader, Johannes; Laurien, Eckart

    2012-01-01

    This article describes the 3D discrete ordinates-based coupled code system TORT-TD/ATTICA3D that aims at steady state and transient analyses of pebble-bed high-temperature gas cooled reactors. In view of increasing computing power, the application of time-dependent neutron transport methods becomes feasible for best estimate evaluations of safety margins. The calculation capabilities of TORT-TD/ATTICA3D are presented along with the coupling approach, with focus on the time-dependent neutron transport features of TORT-TD. Results obtained for the OECD/NEA/NSC PBMR-400 benchmark demonstrate the transient capabilities of TORT-TD/ATTICA3D.

  5. 3D neutronic codes coupled with thermal-hydraulic system codes for PWR, and BWR and VVER reactors

    SciTech Connect

    Langenbuch, S.; Velkov, K.; Lizorkin, M.

    1997-07-01

    This paper describes the objectives of code development for coupling 3D neutronics codes with thermal-hydraulic system codes. The present status of coupling ATHLET with three 3D neutronics codes for VVER- and LWR-reactors is presented. After describing the basic features of the 3D neutronic codes BIPR-8 from Kurchatov-Institute, DYN3D from Research Center Rossendorf and QUABOX/CUBBOX from GRS, first applications of coupled codes for different transient and accident scenarios are presented. The need of further investigations is discussed.

  6. Introduction of the ASP3D Computer Program for Unsteady Aerodynamic and Aeroelastic Analyses

    NASA Technical Reports Server (NTRS)

    Batina, John T.

    2005-01-01

    A new computer program has been developed called ASP3D (Advanced Small Perturbation 3D), which solves the small perturbation potential flow equation in an advanced form including mass-consistent surface and trailing wake boundary conditions, and entropy, vorticity, and viscous effects. The purpose of the program is for unsteady aerodynamic and aeroelastic analyses, especially in the nonlinear transonic flight regime. The program exploits the simplicity of stationary Cartesian meshes with the movement or deformation of the configuration under consideration incorporated into the solution algorithm through a planar surface boundary condition. The new ASP3D code is the result of a decade of developmental work on improvements to the small perturbation formulation, performed while the author was employed as a Senior Research Scientist in the Configuration Aerodynamics Branch at the NASA Langley Research Center. The ASP3D code is a significant improvement to the state-of-the-art for transonic aeroelastic analyses over the CAP-TSD code (Computational Aeroelasticity Program Transonic Small Disturbance), which was developed principally by the author in the mid-1980s. The author is in a unique position as the developer of both computer programs to compare, contrast, and ultimately make conclusions regarding the underlying formulations and utility of each code. The paper describes the salient features of the ASP3D code including the rationale for improvements in comparison with CAP-TSD. Numerous results are presented to demonstrate the ASP3D capability. The general conclusion is that the new ASP3D capability is superior to the older CAP-TSD code because of the myriad improvements developed and incorporated.

  7. International "Intercomparison of 3-Dimensional (3D) Radiation Codes" (13RC)

    NASA Technical Reports Server (NTRS)

    Cahalan, Robert F.; Einaudi, Franco (Technical Monitor)

    2000-01-01

    An international "Intercomparison of 3-dimensional (3D) Radiation Codes" 13RC) has been initiated. It is endorsed by the GEWEX Radiation Panel, and funded jointly by the United States Department of Energy ARM program, and by the National Aeronautics and Space Administration Radiation Sciences program. It is a 3-phase effort that has as its goals to: (1) understand the errors and limits of 3D methods; (2) provide 'baseline' cases for future 3D code development; (3) promote sharing of 3D tools; (4) derive guidelines for 3D tool selection; and (5) improve atmospheric science education in 3D radiation.

  8. A Magnetic Diagnostic Code for 3D Fusion Equilibria

    SciTech Connect

    Samuel Aaron Lazerson

    2012-07-27

    A synthetic magnetic diagnostics code for fusion equilibria is presented. This code calculates the response of various magnetic diagnostics to the equilibria produced by the VMEC and PIES codes. This allows for treatment of equilibria with both good nested flux surfaces and those with stochastic regions. DIAGNO v2.0 builds upon previous codes through the implementation of a virtual casing principle. The codes is validated against a vacuum shot on the Large Helical Device where the vertical field was ramped. As an exercise of the code, the diagnostic response for various equilibria are calculated on the Large Helical Device (LHD).

  9. A Magnetic Diagnostic Code for 3D Fusion Equilibria

    SciTech Connect

    Samuel A. Lazerson, S. Sakakibara and Y. Suzuki

    2013-03-12

    A synthetic magnetic diagnostics code for fusion equilibria is presented. This code calculates the response of various magnetic diagnostics to the equilibria produced by the VMEC and PIES codes. This allows for treatment of equilibria with both good nested flux surfaces and those with stochastic regions. DIAGNO v2.0 builds upon previous codes through the implementation of a virtual casing principle. The code is validated against a vacuum shot on the Large Helical Device (LHD) where the vertical field was ramped. As an exercise of the code, the diagnostic response for various equilibria are calculated on the LHD.

  10. Education System Using Interactive 3D Computer Graphics (3D-CG) Animation and Scenario Language for Teaching Materials

    ERIC Educational Resources Information Center

    Matsuda, Hiroshi; Shindo, Yoshiaki

    2006-01-01

    The 3D computer graphics (3D-CG) animation using a virtual actor's speaking is very effective as an educational medium. But it takes a long time to produce a 3D-CG animation. To reduce the cost of producing 3D-CG educational contents and improve the capability of the education system, we have developed a new education system using Virtual Actor.…

  11. Wall touching kink mode calculations with the M3D code

    NASA Astrophysics Data System (ADS)

    Breslau, J. A.

    2014-10-01

    In recent years there have been a number of results published concerning the transient vessel currents and forces occurring during a tokamak VDE, as predicted by simulations with the nonlinear MHD code M3D. The nature of the simulations is such that these currents and forces occur at the boundary of the computational domain, making the proper choice of boundary conditions critical to the reliability of the results. The M3D boundary condition includes the prescription that the normal component of the velocity vanish at the wall. It has been argued that this prescription invalidates the calculations because it would seem to rule out the possibility of advection of plasma surface currents into the wall. This claim has been tested by applying M3D to an idealized case - a kink-unstable plasma column - in order to abstract the essential physics from the complications involved in the attempt to model real devices. While comparison of the results is complicated by effects arising from the higher dimensionality and complexity of M3D, we have verified that M3D is capable of reproducing both the correct saturation behavior of the free boundary kink and the ``Hiro'' currents arising when the kink interacts with a conducting tile surface interior to the ideal wall.

  12. GPU-accelerated 3D neutron diffusion code based on finite difference method

    SciTech Connect

    Xu, Q.; Yu, G.; Wang, K.

    2012-07-01

    Finite difference method, as a traditional numerical solution to neutron diffusion equation, although considered simpler and more precise than the coarse mesh nodal methods, has a bottle neck to be widely applied caused by the huge memory and unendurable computation time it requires. In recent years, the concept of General-Purpose computation on GPUs has provided us with a powerful computational engine for scientific research. In this study, a GPU-Accelerated multi-group 3D neutron diffusion code based on finite difference method was developed. First, a clean-sheet neutron diffusion code (3DFD-CPU) was written in C++ on the CPU architecture, and later ported to GPUs under NVIDIA's CUDA platform (3DFD-GPU). The IAEA 3D PWR benchmark problem was calculated in the numerical test, where three different codes, including the original CPU-based sequential code, the HYPRE (High Performance Pre-conditioners)-based diffusion code and CITATION, were used as counterpoints to test the efficiency and accuracy of the GPU-based program. The results demonstrate both high efficiency and adequate accuracy of the GPU implementation for neutron diffusion equation. A speedup factor of about 46 times was obtained, using NVIDIA's Geforce GTX470 GPU card against a 2.50 GHz Intel Quad Q9300 CPU processor. Compared with the HYPRE-based code performing in parallel on an 8-core tower server, the speedup of about 2 still could be observed. More encouragingly, without any mathematical acceleration technology, the GPU implementation ran about 5 times faster than CITATION which was speeded up by using the SOR method and Chebyshev extrapolation technique. (authors)

  13. Computations of Emissions Using a 3-D Combustor Program

    NASA Technical Reports Server (NTRS)

    Srivatsa, S. K.

    1983-01-01

    A general 3-D combustor performance program developed by Garrett was extended to predict soot and NOx emissions. The soot formation and oxidation rates were computed by quasi-global models, taking into account the influence of turbulence. Radiation heat transfer was computed by the six-flux radiation mode. The radiation properties include the influence of CO2 and H2O in addition to soot. NOx emissions were computed from a global four-step hydrocarbon oxidation scheme and a set of rate-controlled reactions involving radicals and nitrogen oxides.

  14. Video coding and transmission standards for 3D television — a survey

    NASA Astrophysics Data System (ADS)

    Buchowicz, A.

    2013-03-01

    The emerging 3D television systems require effective techniques for transmission and storage of data representing a 3-D scene. The 3-D scene representations based on multiple video sequences or multiple views plus depth maps are especially important since they can be processed with existing video technologies. The review of the video coding and transmission techniques is presented in this paper.

  15. NASA's 3D Flight Computer for Space Applications

    NASA Technical Reports Server (NTRS)

    Alkalai, Leon

    2000-01-01

    The New Millennium Program (NMP) Integrated Product Development Team (IPDT) for Microelectronics Systems was planning to validate a newly developed 3D Flight Computer system on its first deep-space flight, DS1, launched in October 1998. This computer, developed in the 1995-97 time frame, contains many new computer technologies previously never used in deep-space systems. They include: advanced 3D packaging architecture for future low-mass and low-volume avionics systems; high-density 3D packaged chip-stacks for both volatile and non-volatile mass memory: 400 Mbytes of local DRAM memory, and 128 Mbytes of Flash memory; high-bandwidth Peripheral Component Interface (Per) local-bus with a bridge to VME; high-bandwidth (20 Mbps) fiber-optic serial bus; and other attributes, such as standard support for Design for Testability (DFT). Even though this computer system did not complete on time for delivery to the DS1 project, it was an important development along a technology roadmap towards highly integrated and highly miniaturized avionics systems for deep-space applications. This continued technology development is now being performed by NASA's Deep Space System Development Program (also known as X2000) and within JPL's Center for Integrated Space Microsystems (CISM).

  16. Advanced computational tools for 3-D seismic analysis

    SciTech Connect

    Barhen, J.; Glover, C.W.; Protopopescu, V.A.

    1996-06-01

    The global objective of this effort is to develop advanced computational tools for 3-D seismic analysis, and test the products using a model dataset developed under the joint aegis of the United States` Society of Exploration Geophysicists (SEG) and the European Association of Exploration Geophysicists (EAEG). The goal is to enhance the value to the oil industry of the SEG/EAEG modeling project, carried out with US Department of Energy (DOE) funding in FY` 93-95. The primary objective of the ORNL Center for Engineering Systems Advanced Research (CESAR) is to spearhead the computational innovations techniques that would enable a revolutionary advance in 3-D seismic analysis. The CESAR effort is carried out in collaboration with world-class domain experts from leading universities, and in close coordination with other national laboratories and oil industry partners.

  17. Development of a GPU-Accelerated 3-D Full-Wave Code for Reflectometry Simulations

    NASA Astrophysics Data System (ADS)

    Reuther, K. S.; Kubota, S.; Feibush, E.; Johnson, I.

    2013-10-01

    1-D and 2-D full-wave codes used as synthetic diagnostics in microwave reflectometry are standard tools for understanding electron density fluctuations in fusion plasmas. The accuracy of the code depends on how well the wave properties along the ignored dimensions can be pre-specified or neglected. In a toroidal magnetic geometry, such assumptions are never strictly correct and ray tracing has shown that beam propagation is inherently a 3-D problem. Previously, we reported on the application of GPGPU's (General-Purpose computing on Graphics Processing Units) to a 2-D FDTD (Finite-Difference Time-Domain) code ported to utilize the parallel processing capabilities of the NVIDIA C870 and C1060. Here, we report on the development of a FDTD code for 3-D problems. Initial tests will use NVIDIA's M2070 GPU and concentrate on the launching and propagation of Gaussian beams in free space. If available, results using a plasma target will also be presented. Performance will be compared with previous generations of GPGPU cards as well as with NVIDIA's newest K20C GPU. Finally, the possibility of utilizing multiple GPGPU cards in a cluster environment or in a single node will also be discussed. Supported by U.S. DoE Grants DE-FG02-99-ER54527 and DE-AC02-09CH11466 and the DoE National Undergraduate Fusion Fellowship.

  18. Majority logic gate for 3D magnetic computing.

    PubMed

    Eichwald, Irina; Breitkreutz, Stephan; Ziemys, Grazvydas; Csaba, György; Porod, Wolfgang; Becherer, Markus

    2014-08-22

    For decades now, microelectronic circuits have been exclusively built from transistors. An alternative way is to use nano-scaled magnets for the realization of digital circuits. This technology, known as nanomagnetic logic (NML), may offer significant improvements in terms of power consumption and integration densities. Further advantages of NML are: non-volatility, radiation hardness, and operation at room temperature. Recent research focuses on the three-dimensional (3D) integration of nanomagnets. Here we show, for the first time, a 3D programmable magnetic logic gate. Its computing operation is based on physically field-interacting nanometer-scaled magnets arranged in a 3D manner. The magnets possess a bistable magnetization state representing the Boolean logic states '0' and '1.' Magneto-optical and magnetic force microscopy measurements prove the correct operation of the gate over many computing cycles. Furthermore, micromagnetic simulations confirm the correct functionality of the gate even for a size in the nanometer-domain. The presented device demonstrates the potential of NML for three-dimensional digital computing, enabling the highest integration densities. PMID:25073985

  19. Majority logic gate for 3D magnetic computing

    NASA Astrophysics Data System (ADS)

    Eichwald, Irina; Breitkreutz, Stephan; Ziemys, Grazvydas; Csaba, György; Porod, Wolfgang; Becherer, Markus

    2014-08-01

    For decades now, microelectronic circuits have been exclusively built from transistors. An alternative way is to use nano-scaled magnets for the realization of digital circuits. This technology, known as nanomagnetic logic (NML), may offer significant improvements in terms of power consumption and integration densities. Further advantages of NML are: non-volatility, radiation hardness, and operation at room temperature. Recent research focuses on the three-dimensional (3D) integration of nanomagnets. Here we show, for the first time, a 3D programmable magnetic logic gate. Its computing operation is based on physically field-interacting nanometer-scaled magnets arranged in a 3D manner. The magnets possess a bistable magnetization state representing the Boolean logic states ‘0’ and ‘1.’ Magneto-optical and magnetic force microscopy measurements prove the correct operation of the gate over many computing cycles. Furthermore, micromagnetic simulations confirm the correct functionality of the gate even for a size in the nanometer-domain. The presented device demonstrates the potential of NML for three-dimensional digital computing, enabling the highest integration densities.

  20. 2-D and 3-D computations of curved accelerator magnets

    SciTech Connect

    Turner, L.R.

    1991-01-01

    In order to save computer memory, a long accelerator magnet may be computed by treating the long central region and the end regions separately. The dipole magnets for the injector synchrotron of the Advanced Photon Source (APS), now under construction at Argonne National Laboratory (ANL), employ magnet iron consisting of parallel laminations, stacked with a uniform radius of curvature of 33.379 m. Laplace's equation for the magnetic scalar potential has a different form for a straight magnet (x-y coordinates), a magnet with surfaces curved about a common center (r-{theta} coordinates), and a magnet with parallel laminations like the APS injector dipole. Yet pseudo 2-D computations for the three geometries give basically identical results, even for a much more strongly curved magnet. Hence 2-D (x-y) computations of the central region and 3-D computations of the end regions can be combined to determine the overall magnetic behavior of the magnets. 1 ref., 6 figs.

  1. ORBXYZ: a 3D single-particle orbit code for following charged-particle trajectories in equilibrium magnetic fields

    SciTech Connect

    Anderson, D.V.; Cohen, R.H.; Ferguson, J.R.; Johnston, B.M.; Sharp, C.B.; Willmann, P.A.

    1981-06-30

    The single particle orbit code, TIBRO, has been modified extensively to improve the interpolation methods used and to allow use of vector potential fields in the simulation of charged particle orbits on a 3D domain. A 3D cubic B-spline algorithm is used to generate spline coefficients used in the interpolation. Smooth and accurate field representations are obtained. When vector potential fields are used, the 3D cubic spline interpolation formula analytically generates the magnetic field used to push the particles. This field has del.BETA = 0 to computer roundoff. When magnetic induction is used the interpolation allows del.BETA does not equal 0, which can lead to significant nonphysical results. Presently the code assumes quadrupole symmetry, but this is not an essential feature of the code and could be easily removed for other applications. Many details pertaining to this code are given on microfiche accompanying this report.

  2. Femoroacetabular impingement with chronic acetabular rim fracture - 3D computed tomography, 3D magnetic resonance imaging and arthroscopic correlation

    PubMed Central

    Chhabra, Avneesh; Nordeck, Shaun; Wadhwa, Vibhor; Madhavapeddi, Sai; Robertson, William J

    2015-01-01

    Femoroacetabular impingement is uncommonly associated with a large rim fragment of bone along the superolateral acetabulum. We report an unusual case of femoroacetabular impingement (FAI) with chronic acetabular rim fracture. Radiographic, 3D computed tomography, 3D magnetic resonance imaging and arthroscopy correlation is presented with discussion of relative advantages and disadvantages of various modalities in the context of FAI. PMID:26191497

  3. A 3D multi-block structured version of the KIVA 2 code

    NASA Astrophysics Data System (ADS)

    Habachi, C.; Torres, A.

    A numerical procedure is developed in the KIVA 2 code for calculating flows in complex geometries. Those geometries consist of an arbitrary number of 3D secondary domains which are connected with any angle to a main region. In this procedure, the governing equations are discretized on a system of partial overlapping structured grids. Calculations are performed in the different meshes of the computation domain which are linked by a fully conservative algorithm. By this numerical technique, calculations in those geometries are possible with a reasonable number of inactive cells involved by a structured code like KIVA 2. This algorithm was validated on an 1D analytical case and a 2D experimental case. It was then used for modeling an industrial problem, a two stroke engine with ports and moving boundaries.

  4. 3D visualization for the MARS14 Code

    SciTech Connect

    Rzepecki, Jaroslaw P.; Kostin, Mikhail A; Mokhov, Nikolai V.

    2003-01-23

    A new three-dimensional visualization engine has been developed for the MARS14 code system. It is based on the OPENINVENTOR graphics library and integrated with the MARS built-in two-dimensional Graphical-User Interface, MARS-GUI-SLICE. The integrated package allows thorough checking of complex geometry systems and their fragments, materials, magnetic fields, particle tracks along with a visualization of calculated 2-D histograms. The algorithms and their optimization are described for two geometry classes along with examples in accelerator and detector applications.

  5. Computing Radiative Transfer in a 3D Medium

    NASA Technical Reports Server (NTRS)

    Von Allmen, Paul; Lee, Seungwon

    2012-01-01

    A package of software computes the time-dependent propagation of a narrow laser beam in an arbitrary three- dimensional (3D) medium with absorption and scattering, using the transient-discrete-ordinates method and a direct integration method. Unlike prior software that utilizes a Monte Carlo method, this software enables simulation at very small signal-to-noise ratios. The ability to simulate propagation of a narrow laser beam in a 3D medium is an improvement over other discrete-ordinate software. Unlike other direct-integration software, this software is not limited to simulation of propagation of thermal radiation with broad angular spread in three dimensions or of a laser pulse with narrow angular spread in two dimensions. Uses for this software include (1) computing scattering of a pulsed laser beam on a material having given elastic scattering and absorption profiles, and (2) evaluating concepts for laser-based instruments for sensing oceanic turbulence and related measurements of oceanic mixed-layer depths. With suitable augmentation, this software could be used to compute radiative transfer in ultrasound imaging in biological tissues, radiative transfer in the upper Earth crust for oil exploration, and propagation of laser pulses in telecommunication applications.

  6. Structured Light Based 3d Scanning for Specular Surface by the Combination of Gray Code and Phase Shifting

    NASA Astrophysics Data System (ADS)

    Zhang, Yujia; Yilmaz, Alper

    2016-06-01

    Surface reconstruction using coded structured light is considered one of the most reliable techniques for high-quality 3D scanning. With a calibrated projector-camera stereo system, a light pattern is projected onto the scene and imaged by the camera. Correspondences between projected and recovered patterns are computed in the decoding process, which is used to generate 3D point cloud of the surface. However, the indirect illumination effects on the surface, such as subsurface scattering and interreflections, will raise the difficulties in reconstruction. In this paper, we apply maximum min-SW gray code to reduce the indirect illumination effects of the specular surface. We also analysis the errors when comparing the maximum min-SW gray code and the conventional gray code, which justifies that the maximum min-SW gray code has significant superiority to reduce the indirect illumination effects. To achieve sub-pixel accuracy, we project high frequency sinusoidal patterns onto the scene simultaneously. But for specular surface, the high frequency patterns are susceptible to decoding errors. Incorrect decoding of high frequency patterns will result in a loss of depth resolution. Our method to resolve this problem is combining the low frequency maximum min-SW gray code and the high frequency phase shifting code, which achieves dense 3D reconstruction for specular surface. Our contributions include: (i) A complete setup of the structured light based 3D scanning system; (ii) A novel combination technique of the maximum min-SW gray code and phase shifting code. First, phase shifting decoding with sub-pixel accuracy. Then, the maximum min-SW gray code is used to resolve the ambiguity resolution. According to the experimental results and data analysis, our structured light based 3D scanning system enables high quality dense reconstruction of scenes with a small number of images. Qualitative and quantitative comparisons are performed to extract the advantages of our new

  7. A preliminary evaluation of 3D mesh animation coding techniques

    NASA Astrophysics Data System (ADS)

    Mamou, Khaled; Zaharia, Titus; Preteux, Francoise

    2005-08-01

    This paper provides an overview of the state-of-the-art techniques recently developed within the emerging field of dynamic mesh compression. Static encoders, wavelet-based schemes, PCA-based approaches, differential temporal and spatio-temporal predictive techniques, and clustering-based representations are considered, presented, analyzed, and objectively compared in terms of compression efficiency, algorithmic and computational aspects and offered functionalities (such as progressive transmission, scalable rendering, computational and algorithmic aspects, field of applicability...). The proposed comparative study reveals that: (1) clustering-based approaches offer the best compromise between compression performances and computational complexity; (2) PCA-based representations are highly efficient on long animated sequences (i.e. with number of mesh vertices much smaller than the number of frames) at the price of prohibitive computational complexity of the encoding process; (3) Spatio-temporal Dynapack predictors provides simple yet effective predictive schemes that outperforms simple predictors such as those considered within the interpolator compression node adopted by the MPEG-4 within the AFX standard; (4) Wavelet-based approaches, which provide the best compression performances for static meshes show here again good results, with the additional advantage of a fully progressive representation, but suffer from an applicability limited to large meshes with at least several thousands of vertices per connected component.

  8. Spatial parallelism of a 3D finite difference, velocity-stress elastic wave propagation code

    SciTech Connect

    Minkoff, S.E.

    1999-12-01

    Finite difference methods for solving the wave equation more accurately capture the physics of waves propagating through the earth than asymptotic solution methods. Unfortunately, finite difference simulations for 3D elastic wave propagation are expensive. The authors model waves in a 3D isotropic elastic earth. The wave equation solution consists of three velocity components and six stresses. The partial derivatives are discretized using 2nd-order in time and 4th-order in space staggered finite difference operators. Staggered schemes allow one to obtain additional accuracy (via centered finite differences) without requiring additional storage. The serial code is most unique in its ability to model a number of different types of seismic sources. The parallel implementation uses the MPI library, thus allowing for portability between platforms. Spatial parallelism provides a highly efficient strategy for parallelizing finite difference simulations. In this implementation, one can decompose the global problem domain into one-, two-, and three-dimensional processor decompositions with 3D decompositions generally producing the best parallel speedup. Because I/O is handled largely outside of the time-step loop (the most expensive part of the simulation) the authors have opted for straight-forward broadcast and reduce operations to handle I/O. The majority of the communication in the code consists of passing subdomain face information to neighboring processors for use as ghost cells. When this communication is balanced against computation by allocating subdomains of reasonable size, they observe excellent scaled speedup. Allocating subdomains of size 25 x 25 x 25 on each node, they achieve efficiencies of 94% on 128 processors. Numerical examples for both a layered earth model and a homogeneous medium with a high-velocity blocky inclusion illustrate the accuracy of the parallel code.

  9. Spatial Parallelism of a 3D Finite Difference, Velocity-Stress Elastic Wave Propagation Code

    SciTech Connect

    MINKOFF,SUSAN E.

    1999-12-09

    Finite difference methods for solving the wave equation more accurately capture the physics of waves propagating through the earth than asymptotic solution methods. Unfortunately. finite difference simulations for 3D elastic wave propagation are expensive. We model waves in a 3D isotropic elastic earth. The wave equation solution consists of three velocity components and six stresses. The partial derivatives are discretized using 2nd-order in time and 4th-order in space staggered finite difference operators. Staggered schemes allow one to obtain additional accuracy (via centered finite differences) without requiring additional storage. The serial code is most unique in its ability to model a number of different types of seismic sources. The parallel implementation uses the MP1 library, thus allowing for portability between platforms. Spatial parallelism provides a highly efficient strategy for parallelizing finite difference simulations. In this implementation, one can decompose the global problem domain into one-, two-, and three-dimensional processor decompositions with 3D decompositions generally producing the best parallel speed up. Because i/o is handled largely outside of the time-step loop (the most expensive part of the simulation) we have opted for straight-forward broadcast and reduce operations to handle i/o. The majority of the communication in the code consists of passing subdomain face information to neighboring processors for use as ''ghost cells''. When this communication is balanced against computation by allocating subdomains of reasonable size, we observe excellent scaled speed up. Allocating subdomains of size 25 x 25 x 25 on each node, we achieve efficiencies of 94% on 128 processors. Numerical examples for both a layered earth model and a homogeneous medium with a high-velocity blocky inclusion illustrate the accuracy of the parallel code.

  10. Current loop coalescence studied by 3-D electromagnetic particle code

    NASA Technical Reports Server (NTRS)

    Nishikawa, Ken-Ichi; Sakai, Jun-Ichi; Koide, Shinji; Buneman, O.; Neubert, T.

    1993-01-01

    Solar flare plasma data from the Yohkoh satellite is analyzed. The interactions of current loops were observed in the active regions on the Sun. This observation pointed out the importance of the idea that the solar flare is generated by the coalescence of current loops. The three dimensional electromagnetic particle simulations are to help in understanding the global interaction between two current loops including the evolution of the twist of loops due to instabilities. Associated rapid dynamics of current loop coalescence such as reconnection, shock waves and associated kinetic processes such as energy transfer, acceleration of particles, and electromagnetic emissions are to be studied by the code to complement analytical theories and magnetohydrodynamic simulations of the current loop coalescence. The simulation results show the strong interactions between two current loops, beam and whistler instabilities, and associated parallel and perpendicular particle heating.

  11. 3D ultrasound computer tomography: update from a clinical study

    NASA Astrophysics Data System (ADS)

    Hopp, T.; Zapf, M.; Kretzek, E.; Henrich, J.; Tukalo, A.; Gemmeke, H.; Kaiser, C.; Knaudt, J.; Ruiter, N. V.

    2016-04-01

    Ultrasound Computer Tomography (USCT) is a promising new imaging method for breast cancer diagnosis. We developed a 3D USCT system and tested it in a pilot study with encouraging results: 3D USCT was able to depict two carcinomas, which were present in contrast enhanced MRI volumes serving as ground truth. To overcome severe differences in the breast shape, an image registration was applied. We analyzed the correlation between average sound speed in the breast and the breast density estimated from segmented MRIs and found a positive correlation with R=0.70. Based on the results of the pilot study we now carry out a successive clinical study with 200 patients. For this we integrated our reconstruction methods and image post-processing into a comprehensive workflow. It includes a dedicated DICOM viewer for interactive assessment of fused USCT images. A new preview mode now allows intuitive and faster patient positioning. We updated the USCT system to decrease the data acquisition time by approximately factor two and to increase the penetration depth of the breast into the USCT aperture by 1 cm. Furthermore the compute-intensive reflectivity reconstruction was considerably accelerated, now allowing a sub-millimeter volume reconstruction in approximately 16 minutes. The updates made it possible to successfully image first patients in our ongoing clinical study.

  12. 3D Direct Simulation Monte Carlo Code Which Solves for Geometrics

    1998-01-13

    Pegasus is a 3D Direct Simulation Monte Carlo Code which solves for geometries which can be represented by bodies of revolution. Included are all the surface chemistry enhancements in the 2D code Icarus as well as a real vacuum pump model. The code includes multiple species transport.

  13. PEGASUS. 3D Direct Simulation Monte Carlo Code Which Solves for Geometrics

    SciTech Connect

    Bartel, T.J.

    1998-12-01

    Pegasus is a 3D Direct Simulation Monte Carlo Code which solves for geometries which can be represented by bodies of revolution. Included are all the surface chemistry enhancements in the 2D code Icarus as well as a real vacuum pump model. The code includes multiple species transport.

  14. Wall-touching kink mode calculations with the M3D code

    SciTech Connect

    Breslau, J. A. Bhattacharjee, A.

    2015-06-15

    This paper seeks to address a controversy regarding the applicability of the 3D nonlinear extended MHD code M3D [W. Park et al., Phys. Plasmas 6, 1796 (1999)] and similar codes to calculations of the electromagnetic interaction of a disrupting tokamak plasma with the surrounding vessel structures. M3D is applied to a simple test problem involving an external kink mode in an ideal cylindrical plasma, used also by the Disruption Simulation Code (DSC) as a model case for illustrating the nature of transient vessel currents during a major disruption. While comparison of the results with those of the DSC is complicated by effects arising from the higher dimensionality and complexity of M3D, we verify that M3D is capable of reproducing both the correct saturation behavior of the free boundary kink and the “Hiro” currents arising when the kink interacts with a conducting tile surface interior to the ideal wall.

  15. Wall-touching kink mode calculations with the M3D code

    NASA Astrophysics Data System (ADS)

    Breslau, J. A.; Bhattacharjee, A.

    2015-06-01

    This paper seeks to address a controversy regarding the applicability of the 3D nonlinear extended MHD code M3D [W. Park et al., Phys. Plasmas 6, 1796 (1999)] and similar codes to calculations of the electromagnetic interaction of a disrupting tokamak plasma with the surrounding vessel structures. M3D is applied to a simple test problem involving an external kink mode in an ideal cylindrical plasma, used also by the Disruption Simulation Code (DSC) as a model case for illustrating the nature of transient vessel currents during a major disruption. While comparison of the results with those of the DSC is complicated by effects arising from the higher dimensionality and complexity of M3D, we verify that M3D is capable of reproducing both the correct saturation behavior of the free boundary kink and the "Hiro" currents arising when the kink interacts with a conducting tile surface interior to the ideal wall.

  16. Implementation of wall boundary conditions for transpiration in F3D thin-layer Navier-Stokes code

    NASA Technical Reports Server (NTRS)

    Kandula, M.; Martin, F. W., Jr.

    1991-01-01

    Numerical boundary conditions for mass injection/suction at the wall are incorporated in the thin-layer Navier-Stokes code, F3D. The accuracy of the boundary conditions and the code is assessed by a detailed comparison of the predictions of velocity distributions and skin-friction coefficients with exact similarity solutions for laminar flow over a flat plate with variable blowing/suction, and measurements for turbulent flow past a flat plate with uniform blowing. In laminar flow, F3D predictions for friction coefficient compare well with exact similarity solution with and without suction, but produces large errors at moderate-to-large values of blowing. A slight Mach number dependence of skin-friction coefficient due to blowing in turbulent flow is computed by F3D code. Predicted surface pressures for turbulent flow past an airfoil with mass injection are in qualitative agreement with measurements for a flat plate.

  17. EM modeling for GPIR using 3D FDTD modeling codes

    SciTech Connect

    Nelson, S.D.

    1994-10-01

    An analysis of the one-, two-, and three-dimensional electrical characteristics of structural cement and concrete is presented. This work connects experimental efforts in characterizing cement and concrete in the frequency and time domains with the Finite Difference Time Domain (FDTD) modeling efforts of these substances. These efforts include Electromagnetic (EM) modeling of simple lossless homogeneous materials with aggregate and targets and the modeling dispersive and lossy materials with aggregate and complex target geometries for Ground Penetrating Imaging Radar (GPIR). Two- and three-dimensional FDTD codes (developed at LLNL) where used for the modeling efforts. Purpose of the experimental and modeling efforts is to gain knowledge about the electrical properties of concrete typically used in the construction industry for bridges and other load bearing structures. The goal is to optimize the performance of a high-sample-rate impulse radar and data acquisition system and to design an antenna system to match the characteristics of this material. Results show agreement to within 2 dB of the amplitudes of the experimental and modeled data while the frequency peaks correlate to within 10% the differences being due to the unknown exact nature of the aggregate placement.

  18. Efficient sensitivity computations in 3D air quality models

    NASA Astrophysics Data System (ADS)

    Kioutsioukis, Ioannis; Melas, Dimitrios; Zerefos, Christos; Ziomas, Ioannis

    2005-04-01

    The prediction of ground level ozone for air quality monitoring and assessment is simulated through an integrated system of gridded models (meteorological, photochemical), where the atmosphere is represented with a three-dimensional grid that may include thousands of grid cells. The continuity equation solved by the Photochemical Air Quality Model (PAQM) reproduces the atmospheric processes (dynamical, physical, chemical and radiative), such as moving and mixing air parcels from one grid cell to another, calculating chemical reactions, injecting new emissions. The whole modeling procedure includes several sources of uncertainty, especially in the large data sets that describe the status of the domain (boundary conditions, emissions, chemical reaction rates and several others). The robustness of the photochemical simulation is addressed in this work through the deterministic approach of sensitivity analysis. The automatic differentiation tool ADIFOR is applied on the 3D PAQM CAMx and augments its Fortran 77 code by introducing new lines of code that additionally calculate, in only one run, the gradient of the solution vector with respect to its input parameters. The applicability of the approach is evaluated through a sensitivity study of the modeled concentrations to perturbations at the boundary conditions and the emissions, for three essentially dissimilar European Metropolises of the Auto-Oil II programme (Athens, Milan, and London).

  19. Computational approaches to 3D modeling of RNA.

    PubMed

    Laing, Christian; Schlick, Tamar

    2010-07-21

    Many exciting discoveries have recently revealed the versatility of RNA and its importance in a variety of functions within the cell. Since the structural features of RNA are of major importance to their biological function, there is much interest in predicting RNA structure, either in free form or in interaction with various ligands, including proteins, metabolites and other molecules. In recent years, an increasing number of researchers have developed novel RNA algorithms for predicting RNA secondary and tertiary structures. In this review, we describe current experimental and computational advances and discuss recent ideas that are transforming the traditional view of RNA folding. To evaluate the performance of the most recent RNA 3D folding algorithms, we provide a comparative study in order to test the performance of available 3D structure prediction algorithms for an RNA data set of 43 structures of various lengths and motifs. We find that the algorithms vary widely in terms of prediction quality across different RNA lengths and topologies; most predictions have very large root mean square deviations from the experimental structure. We conclude by outlining some suggestions for future RNA folding research. PMID:21399271

  20. Standards-based approaches to 3D and multiview video coding

    NASA Astrophysics Data System (ADS)

    Sullivan, Gary J.

    2009-08-01

    The extension of video applications to enable 3D perception, which typically is considered to include a stereo viewing experience, is emerging as a mass market phenomenon, as is evident from the recent prevalence of 3D major cinema title releases. For high quality 3D video to become a commonplace user experience beyond limited cinema distribution, adoption of an interoperable coded 3D digital video format will be needed. Stereo-view video can also be studied as a special case of the more general technologies of multiview and "free-viewpoint" video systems. The history of standardization work on this topic is actually richer than people may typically realize. The ISO/IEC Moving Picture Experts Group (MPEG), in particular, has been developing interoperability standards to specify various such coding schemes since the advent of digital video as we know it. More recently, the ITU-T Visual Coding Experts Group (VCEG) has been involved as well in the Joint Video Team (JVT) work on development of 3D features for H.264/14496-10 Advanced Video Coding, including Multiview Video Coding (MVC) extensions. This paper surveys the prior, ongoing, and anticipated future standardization efforts on this subject to provide an overview and historical perspective on feasible approaches to 3D and multiview video coding.

  1. Glasses for 3D ultrasound computer tomography: phase compensation

    NASA Astrophysics Data System (ADS)

    Zapf, M.; Hopp, T.; Ruiter, N. V.

    2016-03-01

    Ultrasound Computer Tomography (USCT), developed at KIT, is a promising new imaging system for breast cancer diagnosis, and was successfully tested in a pilot study. The 3D USCT II prototype consists of several hundreds of ultrasound (US) transducers on a semi-ellipsoidal aperture. Spherical waves are sequentially emitted by individual transducers and received in parallel by many transducers. Reflectivity volumes are reconstructed by synthetic aperture focusing (SAFT). However, straight forward SAFT imaging leads to blurred images due to system imperfections. We present an extension of a previously proposed approach to enhance the images. This approach includes additional a priori information and system characteristics. Now spatial phase compensation was included. The approach was evaluated with a simulation and clinical data sets. An increase in the image quality was observed and quantitatively measured by SNR and other metrics.

  2. Computing 3D head orientation from a monocular image sequence

    NASA Astrophysics Data System (ADS)

    Horprasert, Thanarat; Yacoob, Yaser; Davis, Larry S.

    1997-02-01

    An approach for estimating 3D head orientation in a monocular image sequence is proposed. The approach employs recently developed image-based parameterized tracking for face and face features to locate the area in which a sub- pixel parameterized shape estimation of the eye's boundary is performed. This involves tracking of five points (four at the eye corners and the fifth is the tip of the nose). We describe an approach that relies on the coarse structure of the face to compute orientation relative to the camera plane. Our approach employs projective invariance of the cross-ratios of the eye corners and anthropometric statistics to estimate the head yaw, roll and pitch. Analytical and experimental results are reported.

  3. Quantitative analysis of accuracy of seismic wave-propagation codes in 3D random scattering media

    NASA Astrophysics Data System (ADS)

    Galis, Martin; Imperatori, Walter; Mai, P. Martin

    2013-04-01

    Several recent verification studies (e.g. Day et al., 2001; Bielak et al., 2010, Chaljub et al., 2010) have demonstrated the importance of assessing the accuracy of available numerical tools at low frequency in presence of large-scale features (basins, topography, etc.). The fast progress in high-performance computing, including efficient optimization of numerical codes on petascale supercomputers, has permitted the simulation of 3D seismic wave propagation at frequencies of engineering interest (up to 10Hz) in highly heterogeneous media (e.g. Hartzell et al, 2010; Imperatori and Mai, 2013). However, high frequency numerical simulations involving random scattering media, characterized by small-scale heterogeneities, are much more challenging for most numerical methods, and their verification may therefore be even more crucial than in the low-frequency case. Our goal is to quantitatively compare the accuracy and the behavior of three different numerical codes for seismic wave propagation in 3D random scattering media at high frequency. We deploy a point source with omega-squared spectrum, and focus on the near-source region, being of great interest in strong motion seismology. We use two codes based on finite-difference method (FD1 and FD2) and one code based on support-operator method (SO). Both FD1 and FD2 are 4-th order staggered-grid finite-difference codes (for FD1 see Olsen et al., 2009; for FD2 see Moczo et al., 2007). The FD1 and FD2 codes are characterized by slightly different medium representations, since FD1 uses point values of material parameters in each FD-cell, while FD2 uses the effective material parameters at each grid-point (Moczo et al., 2002). SO is 2-nd order support-operator method (Ely et al., 2008). We considered models with random velocity perturbations described by van Karman correlation function with different correlation lengths and different standard deviations. Our results show significant variability in both phase and amplitude as

  4. Application of the ASP3D Computer Program to Unsteady Aerodynamic and Aeroelastic Analyses

    NASA Technical Reports Server (NTRS)

    Batina, John T.

    2006-01-01

    A new computer program has been developed called ASP3D (Advanced Small Perturbation - 3D), which solves the small perturbation potential flow equation in an advanced form including mass-consistent surface and trailing wake boundary conditions, and entropy, vorticity, and viscous effects. The purpose of the program is for unsteady aerodynamic and aeroelastic analyses, especially in the nonlinear transonic flight regime. The program exploits the simplicity of stationary Cartesian meshes with the movement or deformation of the configuration under consideration incorporated into the solution algorithm through a planar surface boundary condition. The paper presents unsteady aerodynamic and aeroelastic applications of ASP3D to assess the time dependent capability and demonstrate various features of the code.

  5. Computational study of 3-D hot-spot initiation in shocked insensitive high-explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.; Manaa, M. R.; Nichols, A., III; Levesque, G.

    2012-03-01

    High-explosive (HE) material consists of large-sized grains with micron-sized embedded impurities and pores. Under various mechanical/thermal insults, these pores collapse generating hightemperature regions leading to ignition. A hydrodynamic study has been performed to investigate the mechanisms of pore collapse and hot spot initiation in TATB crystals, employing a multiphysics code, ALE3D, coupled to the chemistry module, Cheetah. This computational study includes reactive dynamics. Two-dimensional high-resolution large-scale meso-scale simulations have been performed. The parameter space is systematically studied by considering various shock strengths, pore diameters and multiple pore configurations. Preliminary 3-D simulations are undertaken to quantify the 3-D dynamics.

  6. Protein 3D Structure Computed from Evolutionary Sequence Variation

    PubMed Central

    Sheridan, Robert; Hopf, Thomas A.; Pagnani, Andrea; Zecchina, Riccardo; Sander, Chris

    2011-01-01

    The evolutionary trajectory of a protein through sequence space is constrained by its function. Collections of sequence homologs record the outcomes of millions of evolutionary experiments in which the protein evolves according to these constraints. Deciphering the evolutionary record held in these sequences and exploiting it for predictive and engineering purposes presents a formidable challenge. The potential benefit of solving this challenge is amplified by the advent of inexpensive high-throughput genomic sequencing. In this paper we ask whether we can infer evolutionary constraints from a set of sequence homologs of a protein. The challenge is to distinguish true co-evolution couplings from the noisy set of observed correlations. We address this challenge using a maximum entropy model of the protein sequence, constrained by the statistics of the multiple sequence alignment, to infer residue pair couplings. Surprisingly, we find that the strength of these inferred couplings is an excellent predictor of residue-residue proximity in folded structures. Indeed, the top-scoring residue couplings are sufficiently accurate and well-distributed to define the 3D protein fold with remarkable accuracy. We quantify this observation by computing, from sequence alone, all-atom 3D structures of fifteen test proteins from different fold classes, ranging in size from 50 to 260 residues., including a G-protein coupled receptor. These blinded inferences are de novo, i.e., they do not use homology modeling or sequence-similar fragments from known structures. The co-evolution signals provide sufficient information to determine accurate 3D protein structure to 2.7–4.8 Å Cα-RMSD error relative to the observed structure, over at least two-thirds of the protein (method called EVfold, details at http://EVfold.org). This discovery provides insight into essential interactions constraining protein evolution and will facilitate a comprehensive survey of the universe of protein

  7. Computational and methodological developments towards 3D full waveform inversion

    NASA Astrophysics Data System (ADS)

    Etienne, V.; Virieux, J.; Hu, G.; Jia, Y.; Operto, S.

    2010-12-01

    Full waveform inversion (FWI) is one of the most promising techniques for seismic imaging. It relies on a formalism taking into account every piece of information contained in the seismic data as opposed to more classical techniques such as travel time tomography. As a result, FWI is a high resolution imaging process able to reach a spatial accuracy equal to half a wavelength. FWI is based on a local optimization scheme and therefore the main limitation concerns the starting model which has to be closed enough to the real one in order to converge to the global minimum. Another counterpart of FWI is the required computational resources when considering models and frequencies of interest. The task becomes even more tremendous when one tends to perform the inversion using the elastic equation instead of using the acoustic approximation. This is the reason why until recently most studies were limited to 2D cases. In the last few years, due to the increase of the available computational power, FWI has focused a lot of interests and continuous efforts towards inversion of 3D models, leading to remarkable applications up to the continental scale. We investigate the computational burden induced by FWI in 3D elastic media and propose some strategic features leading to the reduction of the numerical cost while providing a great flexibility in the inversion parametrization. First, in order to release the memory requirements, we developed our FWI algorithm in the frequency domain and take benefit of the wave-number redundancy in the seismic data to process a quite reduced number of frequencies. To do so, we extract frequency solutions from time marching techniques which are efficient for 3D structures. Moreover, this frequency approach permits a multi-resolution strategy by proceeding from low to high frequencies: the final model at one frequency is used as the starting model for the next frequency. This procedure overcomes partially the non-linear behavior of the inversion

  8. Status and future of the 3D MAFIA group of codes

    NASA Astrophysics Data System (ADS)

    Ebeling, F.; Klatt, R.; Krawzcyk, F.; Lawinsky, E.; Weiland, T.; Wipf, S. G.; Steffen, B.; Barts, T.; Browman, J.; Cooper, R. K.; Rodenz, G.

    1988-12-01

    The group of fully three dimensional computer codes for solving Maxwell's equations for a wide range of applications, MAFIA, is already well established. Extensive comparisons with measurements have demonstrated the accuracy of the computations. A large numer of components have been designed for accelerators, such as kicker magnets, non cyclindrical cavities, ferrite loaded cavities, vacuum chambers with slots and transitions, etc. The latest additions to the system include a new static solver that can calculate 3D magneto- and electrostatic fields, and a self consistent version of the 2D-BCI that solves the field equations and the equations of motion in parallel. Work on new eddy current modules has started, which will allow treatment of laminated and/or solid iron cores excited by low frequency currents. Based on our experience with the present releases 1 and 2, we have started a complete revision of the whole user interface and data structure, which will make the codes even more user-friendly and flexible.

  9. TOMO3D: 3-D joint refraction and reflection traveltime tomography parallel code for active-source seismic data—synthetic test

    NASA Astrophysics Data System (ADS)

    Meléndez, A.; Korenaga, J.; Sallarès, V.; Miniussi, A.; Ranero, C. R.

    2015-10-01

    We present a new 3-D traveltime tomography code (TOMO3D) for the modelling of active-source seismic data that uses the arrival times of both refracted and reflected seismic phases to derive the velocity distribution and the geometry of reflecting boundaries in the subsurface. This code is based on its popular 2-D version TOMO2D from which it inherited the methods to solve the forward and inverse problems. The traveltime calculations are done using a hybrid ray-tracing technique combining the graph and bending methods. The LSQR algorithm is used to perform the iterative regularized inversion to improve the initial velocity and depth models. In order to cope with an increased computational demand due to the incorporation of the third dimension, the forward problem solver, which takes most of the run time (˜90 per cent in the test presented here), has been parallelized with a combination of multi-processing and message passing interface standards. This parallelization distributes the ray-tracing and traveltime calculations among available computational resources. The code's performance is illustrated with a realistic synthetic example, including a checkerboard anomaly and two reflectors, which simulates the geometry of a subduction zone. The code is designed to invert for a single reflector at a time. A data-driven layer-stripping strategy is proposed for cases involving multiple reflectors, and it is tested for the successive inversion of the two reflectors. Layers are bound by consecutive reflectors, and an initial velocity model for each inversion step incorporates the results from previous steps. This strategy poses simpler inversion problems at each step, allowing the recovery of strong velocity discontinuities that would otherwise be smoothened.

  10. 3D video coding: an overview of present and upcoming standards

    NASA Astrophysics Data System (ADS)

    Merkle, Philipp; Müller, Karsten; Wiegand, Thomas

    2010-07-01

    An overview of existing and upcoming 3D video coding standards is given. Various different 3D video formats are available, each with individual pros and cons. The 3D video formats can be separated into two classes: video-only formats (such as stereo and multiview video) and depth-enhanced formats (such as video plus depth and multiview video plus depth). Since all these formats exist of at least two video sequences and possibly additional depth data, efficient compression is essential for the success of 3D video applications and technologies. For the video-only formats the H.264 family of coding standards already provides efficient and widely established compression algorithms: H.264/AVC simulcast, H.264/AVC stereo SEI message, and H.264/MVC. For the depth-enhanced formats standardized coding algorithms are currently being developed. New and specially adapted coding approaches are necessary, as the depth or disparity information included in these formats has significantly different characteristics than video and is not displayed directly, but used for rendering. Motivated by evolving market needs, MPEG has started an activity to develop a generic 3D video standard within the 3DVC ad-hoc group. Key features of the standard are efficient and flexible compression of depth-enhanced 3D video representations and decoupling of content creation and display requirements.

  11. Depth-based coding of MVD data for 3D video extension of H.264/AVC

    NASA Astrophysics Data System (ADS)

    Rusanovskyy, Dmytro; Hannuksela, Miska M.; Su, Wenyi

    2013-06-01

    This paper describes a novel approach of using depth information for advanced coding of associated video data in Multiview Video plus Depth (MVD)-based 3D video systems. As a possible implementation of this conception, we describe two coding tools that have been developed for H.264/AVC based 3D Video Codec as response to Moving Picture Experts Group (MPEG) Call for Proposals (CfP). These tools are Depth-based Motion Vector Prediction (DMVP) and Backward View Synthesis Prediction (BVSP). Simulation results conducted under JCT-3V/MPEG 3DV Common Test Conditions show, that proposed in this paper tools reduce bit rate of coded video data by 15% of average delta bit rate reduction, which results in 13% of bit rate savings on total for the MVD data over the state-of-the-art MVC+D coding. Moreover, presented in this paper conception of depth-based coding of video has been further developed by MPEG 3DV and JCT-3V and this work resulted in even higher compression efficiency, bringing about 20% of delta bit rate reduction on total for coded MVD data over the reference MVC+D coding. Considering significant gains, proposed in this paper coding approach can be beneficial for development of new 3D video coding standards. [Figure not available: see fulltext.

  12. Computational ocean acoustics: Advances in 3D ocean acoustic modeling

    NASA Astrophysics Data System (ADS)

    Schmidt, Henrik; Jensen, Finn B.

    2012-11-01

    The numerical model of ocean acoustic propagation developed in the 1980's are still in widespread use today, and the field of computational ocean acoustics is often considered a mature field. However, the explosive increase in computational power available to the community has created opportunities for modeling phenomena that earlier were beyond reach. Most notably, three-dimensional propagation and scattering problems have been prohibitive computationally, but are now addressed routinely using brute force numerical approaches such as the Finite Element Method, in particular for target scattering problems, where they are being combined with the traditional wave theory propagation models in hybrid modeling frameworks. Also, recent years has seen the development of hybrid approaches coupling oceanographic circulation models with acoustic propagation models, enabling the forecasting of sonar performance uncertainty in dynamic ocean environments. These and other advances made over the last couple of decades support the notion that the field of computational ocean acoustics is far from being mature. [Work supported by the Office of Naval Research, Code 321OA].

  13. Computationally efficient storage of 3D particle intensity and position data for use in 3D PIV and 3D PTV

    NASA Astrophysics Data System (ADS)

    Atkinson, C.; Buchmann, N. A.; Soria, J.

    2013-11-01

    Three-dimensional (3D) volumetric velocity measurement techniques, such as tomographic or holographic particle image velocimetry (PIV), rely upon the computationally intensive formation, storage and localized interrogation of multiple 3D particle intensity fields. Calculation of a single velocity field typically requires the extraction of particle intensities into tens of thousands of 3D sub-volumes or discrete particle clusters, the processing of which can significantly affect the performance of 3D cross-correlation based PIV and 3D particle tracking velocimetry (PTV). In this paper, a series of popular and customized volumetric data formats are presented and investigated using synthetic particle volumes and experimental data arising from tomographic PIV measurements of a turbulent boundary layer. Results show that the use of a sub-grid ordered non-zero intensity format with a sub-grid size of 16 × 16 × 16 points provides the best performance for cross-correlation based PIV analysis, while a particle clustered non-zero intensity format provides the best format for PTV applications. In practical tomographic PIV measurements the sub-grid ordered non-zero intensity format offered a 29% improvement in reconstruction times, while providing a 93% reduction in volume data requirements and a 28% overall improvement in cross-correlation based velocity analysis and validation times.

  14. Description of FEL3D: A three dimensional simulation code for TOK and FEL

    SciTech Connect

    Dutt, S.; Friedman, A.; Gover, A.

    1988-10-20

    FEL3D is a three dimensional simulation code, written for the purpose of calculating the parameters of coherent radiation emitted by electrons in an undulator. The program was written predominantly for simulating the coherent super-radiant harmonic frequency emission of electrons which are being bunched by an external laser beam while propagating in an undulator magnet. This super-radiant emission is to be studied in the TOK (transverse optical klystron) experiment, which is under construction in the NSLS department at Brookhaven National Laboratory. The program can also calculate the stimulated emission radiometric properties of a free electron laser (FEL) taking into account three dimensional effects. While this application is presently limited to the small gain operation regime of FEL's, extension to the high gain regime is expected to be relatively easy. The code is based on a semi-analytical concept. Instead of a full numerical solution of the Maxwell-Lorentz equations, the trajectories of the electron in the wiggler field are calculated analytically, and the radiation fields are expanded in terms of free space eigen-modes. This approach permits efficient computation, with a computation time of about 0.1 sec/electron on the BNL IBM 3090. The code reflects the important three dimensional features of the electron beam, the modulating laser beam, and the emitted radiation field. The statistical approach is based on averaging over the electron initial conditions according to a given distribution function in phase space, rather than via Monte-Carlo simulation. The present version of the program is written for uniform periodic wiggler field, but extension to nonuniform fields is straightforward. 4 figs., 5 tabs.

  15. Reactor Dosimetry Applications Using RAPTOR-M3G:. a New Parallel 3-D Radiation Transport Code

    NASA Astrophysics Data System (ADS)

    Longoni, Gianluca; Anderson, Stanwood L.

    2009-08-01

    The numerical solution of the Linearized Boltzmann Equation (LBE) via the Discrete Ordinates method (SN) requires extensive computational resources for large 3-D neutron and gamma transport applications due to the concurrent discretization of the angular, spatial, and energy domains. This paper will discuss the development RAPTOR-M3G (RApid Parallel Transport Of Radiation - Multiple 3D Geometries), a new 3-D parallel radiation transport code, and its application to the calculation of ex-vessel neutron dosimetry responses in the cavity of a commercial 2-loop Pressurized Water Reactor (PWR). RAPTOR-M3G is based domain decomposition algorithms, where the spatial and angular domains are allocated and processed on multi-processor computer architectures. As compared to traditional single-processor applications, this approach reduces the computational load as well as the memory requirement per processor, yielding an efficient solution methodology for large 3-D problems. Measured neutron dosimetry responses in the reactor cavity air gap will be compared to the RAPTOR-M3G predictions. This paper is organized as follows: Section 1 discusses the RAPTOR-M3G methodology; Section 2 describes the 2-loop PWR model and the numerical results obtained. Section 3 addresses the parallel performance of the code, and Section 4 concludes this paper with final remarks and future work.

  16. Computation of neutron fluxes in clusters of fuel pins arranged in hexagonal assemblies (2D and 3D)

    SciTech Connect

    Prabha, H.; Marleau, G.

    2012-07-01

    For computations of fluxes, we have used Carvik's method of collision probabilities. This method requires tracking algorithms. An algorithm to compute tracks (in 2D and 3D) has been developed for seven hexagonal geometries with cluster of fuel pins. This has been implemented in the NXT module of the code DRAGON. The flux distribution in cluster of pins has been computed by using this code. For testing the results, they are compared when possible with the EXCELT module of the code DRAGON. Tracks are plotted in the NXT module by using MATLAB, these plots are also presented here. Results are presented with increasing number of lines to show the convergence of these results. We have numerically computed volumes, surface areas and the percentage errors in these computations. These results show that 2D results converge faster than 3D results. The accuracy on the computation of fluxes up to second decimal is achieved with fewer lines. (authors)

  17. Parallel computation of 3-D Navier-Stokes flowfields for supersonic vehicles

    NASA Technical Reports Server (NTRS)

    Ryan, James S.; Weeratunga, Sisira

    1993-01-01

    Multidisciplinary design optimization of aircraft will require unprecedented capabilities of both analysis software and computer hardware. The speed and accuracy of the analysis will depend heavily on the computational fluid dynamics (CFD) module which is used. A new CFD module has been developed to combine the robust accuracy of conventional codes with the ability to run on parallel architectures. This is achieved by parallelizing the ARC3D algorithm, a central-differenced Navier-Stokes method, on the Intel iPSC/860. The computed solutions are identical to those from conventional machines. Computational speed on 64 processors is comparable to the rate on one Cray Y-MP processor and will increase as new generations of parallel computers become available.

  18. Impact of packet losses in scalable 3D holoscopic video coding

    NASA Astrophysics Data System (ADS)

    Conti, Caroline; Nunes, Paulo; Ducla Soares, Luís.

    2014-05-01

    Holoscopic imaging became a prospective glassless 3D technology to provide more natural 3D viewing experiences to the end user. Additionally, holoscopic systems also allow new post-production degrees of freedom, such as controlling the plane of focus or the viewing angle presented to the user. However, to successfully introduce this technology into the consumer market, a display scalable coding approach is essential to achieve backward compatibility with legacy 2D and 3D displays. Moreover, to effectively transmit 3D holoscopic content over error-prone networks, e.g., wireless networks or the Internet, error resilience techniques are required to mitigate the impact of data impairments in the user quality perception. Therefore, it is essential to deeply understand the impact of packet losses in terms of decoding video quality for the specific case of 3D holoscopic content, notably when a scalable approach is used. In this context, this paper studies the impact of packet losses when using a three-layer display scalable 3D holoscopic video coding architecture previously proposed, where each layer represents a different level of display scalability (i.e., L0 - 2D, L1 - stereo or multiview, and L2 - full 3D holoscopic). For this, a simple error concealment algorithm is used, which makes use of inter-layer redundancy between multiview and 3D holoscopic content and the inherent correlation of the 3D holoscopic content to estimate lost data. Furthermore, a study of the influence of 2D views generation parameters used in lower layers on the performance of the used error concealment algorithm is also presented.

  19. Multitasking the INS3D-LU code on the Cray Y-MP

    NASA Technical Reports Server (NTRS)

    Fatoohi, Rod; Yoon, Seokkwan

    1991-01-01

    This paper presents the results of multitasking the INS3D-LU code on eight processors. The code is a full Navier-Stokes solver for incompressible fluid in three dimensional generalized coordinates using a lower-upper symmetric-Gauss-Seidel implicit scheme. This code has been fully vectorized on oblique planes of sweep and parallelized using autotasking with some directives and minor modifications. The timing results for five grid sizes are presented and analyzed. The code has achieved a processing rate of over one Gflops.

  20. Validation Studies of the Finite Orbit Width version of the CQL3D code

    NASA Astrophysics Data System (ADS)

    Petrov, Yu. V.; Harvey, R. W.

    2014-10-01

    The Finite-Orbit-Width (FOW) version of the CQL3D bounce-averaged Fokker-Planck (FP) code has been further developed and tested. The neoclassical radial transport appears naturally in this version by averaging the local collision coefficients along guiding center orbits, with a proper transformation matrix from local (R,Z) coordinates to the midplane computational coordinates, where the FP equation is solved. In a similar way, the local quasilinear rf diffusion terms give rise to additional radial transport of orbits. The main challenge is the internal boundary conditions (IBC) which add many elements into the matrix of coefficients for the solution of FPE on the computational grid, effectively making it a non-banded matrix (but still sparse). Steady state runs have been achieved at NERSC supercomputers in typically 10 time steps. Validation tests are performed for NSTX conditions, but using different scaling factors of equilibrium magnetic field, from 0.5 to 8.0. The bootstrap current calculations for ions show a reasonable agreement of current density profiles with Sauter et al. model equations which are based on 1st order expansion, although the magnitudes of currents may differ by up to 30%. Supported by USDOE grants SC0006614, ER54744, and ER44649.

  1. Computing elastic moduli on 3-D X-ray computed tomography image stacks

    NASA Astrophysics Data System (ADS)

    Garboczi, E. J.; Kushch, V. I.

    2015-03-01

    A numerical task of current interest is to compute the effective elastic properties of a random composite material by operating on a 3D digital image of its microstructure obtained via X-ray computed tomography (CT). The 3-D image is usually sub-sampled since an X-ray CT image is typically of order 10003 voxels or larger, which is considered to be a very large finite element problem. Two main questions for the validity of any such study are then: can the sub-sample size be made sufficiently large to capture enough of the important details of the random microstructure so that the computed moduli can be thought of as accurate, and what boundary conditions should be chosen for these sub-samples? This paper contributes to the answer of both questions by studying a simulated X-ray CT cylindrical microstructure with three phases, cut from a random model system with known elastic properties. A new hybrid numerical method is introduced, which makes use of finite element solutions coupled with exact solutions for elastic moduli of square arrays of parallel cylindrical fibers. The new method allows, in principle, all of the microstructural data to be used when the X-ray CT image is in the form of a cylinder, which is often the case. Appendix A describes a similar algorithm for spherical sub-samples, which may be of use when examining the mechanical properties of particles. Cubic sub-samples are also taken from this simulated X-ray CT structure to investigate the effect of two different kinds of boundary conditions: forced periodic and fixed displacements. It is found that using forced periodic displacements on the non-geometrically periodic cubic sub-samples always gave more accurate results than using fixed displacements, although with about the same precision. The larger the cubic sub-sample, the more accurate and precise was the elastic computation, and using the complete cylindrical sample with the new method gave still more accurate and precise results. Fortran 90

  2. A 3D-CFD code for accurate prediction of fluid flows and fluid forces in seals

    NASA Astrophysics Data System (ADS)

    Athavale, M. M.; Przekwas, A. J.; Hendricks, R. C.

    1994-01-01

    Current and future turbomachinery requires advanced seal configurations to control leakage, inhibit mixing of incompatible fluids and to control the rotodynamic response. In recognition of a deficiency in the existing predictive methodology for seals, a seven year effort was established in 1990 by NASA's Office of Aeronautics Exploration and Technology, under the Earth-to-Orbit Propulsion program, to develop validated Computational Fluid Dynamics (CFD) concepts, codes and analyses for seals. The effort will provide NASA and the U.S. Aerospace Industry with advanced CFD scientific codes and industrial codes for analyzing and designing turbomachinery seals. An advanced 3D CFD cylindrical seal code has been developed, incorporating state-of-the-art computational methodology for flow analysis in straight, tapered and stepped seals. Relevant computational features of the code include: stationary/rotating coordinates, cylindrical and general Body Fitted Coordinates (BFC) systems, high order differencing schemes, colocated variable arrangement, advanced turbulence models, incompressible/compressible flows, and moving grids. This paper presents the current status of code development, code demonstration for predicting rotordynamic coefficients, numerical parametric study of entrance loss coefficients for generic annular seals, and plans for code extensions to labyrinth, damping, and other seal configurations.

  3. Magnetotelluric 3-D inversion—a review of two successful workshops on forward and inversion code testing and comparison

    NASA Astrophysics Data System (ADS)

    Miensopust, Marion P.; Queralt, Pilar; Jones, Alan G.; 3D MT modellers

    2013-06-01

    Over the last half decade the need for, and importance of, three-dimensional (3-D) modelling of magnetotelluric (MT) data have increased dramatically and various 3-D forward and inversion codes are in use and some have become commonly available. Comparison of forward responses and inversion results is an important step for code testing and validation prior to `production' use. The various codes use different mathematical approximations to the problem (finite differences, finite elements or integral equations), various orientations of the coordinate system, different sign conventions for the time dependence and various inversion strategies. Additionally, the obtained results are dependent on data analysis, selection and correction as well as on the chosen mesh, inversion parameters and regularization adopted, and therefore, a careful and knowledge-based use of the codes is essential. In 2008 and 2011, during two workshops at the Dublin Institute for Advanced Studies over 40 people from academia (scientists and students) and industry from around the world met to discuss 3-D MT inversion. These workshops brought together a mix of code writers as well as code users to assess the current status of 3-D modelling, to compare the results of different codes, and to discuss and think about future improvements and new aims in 3-D modelling. To test the numerical forward solutions, two 3-D models were designed to compare the responses obtained by different codes and/or users. Furthermore, inversion results of these two data sets and two additional data sets obtained from unknown models (secret models) were also compared. In this manuscript the test models and data sets are described (supplementary files are available) and comparisons of the results are shown. Details regarding the used data, forward and inversion parameters as well as computational power are summarized for each case, and the main discussion points of the workshops are reviewed. In general, the responses

  4. Planet-Disk Interaction on the GPU: The FARGO3D code

    NASA Astrophysics Data System (ADS)

    Masset, F. S.; Benítez-Llambay, P.

    2015-10-01

    We present the new code FARGO3D. It is a finite difference code that solves the equations of hydrodynamics or magnetohydrodynamics on a Cartesian, cylindrical or spherical mesh. It features orbital advection, conserves mass and (angular) momentum to machine accuracy. Special emphasis is put on the description of planet disk tidal interactions. It is parallelized with MPI, and it can run indistinctly on CPUs or GPUs, without the need to program in a GPU oriented language.

  5. FERM3D: A finite element R-matrix electron molecule scattering code

    NASA Astrophysics Data System (ADS)

    Tonzani, Stefano

    2007-01-01

    FERM3D is a three-dimensional finite element program, for the elastic scattering of a low energy electron from a general polyatomic molecule, which is converted to a potential scattering problem. The code is based on tricubic polynomials in spherical coordinates. The electron-molecule interaction is treated as a sum of three terms: electrostatic, exchange, and polarization. The electrostatic term can be extracted directly from ab initio codes ( GAUSSIAN 98 in the work described here), while the exchange term is approximated using a local density functional. A local polarization potential based on density functional theory [C. Lee, W. Yang, R.G. Parr, Phys. Rev. B 37 (1988) 785] describes the long range attraction to the molecular target induced by the scattering electron. Photoionization calculations are also possible and illustrated in the present work. The generality and simplicity of the approach is important in extending electron-scattering calculations to more complex targets than it is possible with other methods. Program summaryTitle of program:FERM3D Catalogue identifier:ADYL_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/ADYL_v1_0 Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland Computer for which the program is designed and others on which it has been tested:Intel Xeon, AMD Opteron 64 bit, Compaq Alpha Operating systems or monitors under which the program has been tested:HP Tru64 Unix v5.1, Red Hat Linux Enterprise 3 Programming language used:Fortran 90 Memory required to execute with typical data:900 MB (neutral CO 2), 2.3 GB (ionic CO 2), 1.4 GB (benzene) No. of bits in a word:32 No. of processors used:1 Has the code been vectorized?:No No. of lines in distributed program, including test data, etc.:58 383 No. of bytes in distributed program, including test data, etc.:561 653 Distribution format:tar.gzip file CPC Program library subprograms used:ADDA, ACDP Nature of physical problem:Scattering of an

  6. Effect of Random Geometric Uncertainty on the Computational Design of a 3-D Flexible Wing

    NASA Technical Reports Server (NTRS)

    Gumbert, C. R.; Newman, P. A.; Hou, G. J.-W.

    2002-01-01

    The effect of geometric uncertainty due to statistically independent, random, normally distributed shape parameters is demonstrated in the computational design of a 3-D flexible wing. A first-order second-moment statistical approximation method is used to propagate the assumed input uncertainty through coupled Euler CFD aerodynamic / finite element structural codes for both analysis and sensitivity analysis. First-order sensitivity derivatives obtained by automatic differentiation are used in the input uncertainty propagation. These propagated uncertainties are then used to perform a robust design of a simple 3-D flexible wing at supercritical flow conditions. The effect of the random input uncertainties is shown by comparison with conventional deterministic design results. Sample results are shown for wing planform, airfoil section, and structural sizing variables.

  7. 3D Neutron Transport PWR Full-core Calculation with RMC code

    NASA Astrophysics Data System (ADS)

    Qiu, Yishu; She, Ding; Fan, Xiao; Wang, Kan; Li, Zeguang; Liang, Jingang; Leroyer, Hadrien

    2014-06-01

    Nowadays, there are more and more interests in the use of Monte Carlo codes to calculate the detailed power density distributions in full-core reactors. With the Inspur TS1000 HPC Server of Tsinghua University, several calculations have been done based on the EDF 3D Neutron Transport PWR Full-core benchmark through large-scale parallelism. To investigate and compare the results of the deterministic method and Monte Carlo method, EDF R&D and Department of Engineering Physics of Tsinghua University are having a collaboration to make code to code verification. So in this paper, two codes are used. One is the code COCAGNE developed by the EDF R&D, a deterministic core code, and the other is the Monte Carlo code RMC developed by Department of Engineering Physics in Tsinghua University. First, the full-core model is described and a 26-group calculation was performed by these two codes using the same 26-group cross-section library provided by EDF R&D. Then the parallel and tally performance of RMC is discussed. RMC employs a novel algorithm which can cut down most of the communications. It can be seen clearly that the speedup ratio almost linearly increases with the nodes. Furthermore the cell-mapping method applied by RMC consumes little time to tally even millions of cells. The results of the codes COCAGNE and RMC are compared in three ways. The results of these two codes agree well with each other. It can be concluded that both COCAGNE and RMC are able to provide 3D-transport solutions associated with detailed power density distributions calculation in PWR full-core reactors. Finally, to investigate how many histories are needed to obtain a given standard deviation for a full 3D solution, the non-symmetrized condensed 2-group fluxes of RMC are discussed.

  8. Development of a GPU-Accelerated 3-D Full-Wave Code for Electromagnetic Wave Propagation in a Cold Plasma

    NASA Astrophysics Data System (ADS)

    Woodbury, D.; Kubota, S.; Johnson, I.

    2014-10-01

    Computer simulations of electromagnetic wave propagation in magnetized plasmas are an important tool for both plasma heating and diagnostics. For active millimeter-wave and microwave diagnostics, accurately modeling the evolution of the beam parameters for launched, reflected or scattered waves in a toroidal plasma requires that calculations be done using the full 3-D geometry. Previously, we reported on the application of GPGPU (General-Purpose computing on Graphics Processing Units) to a 3-D vacuum Maxwell code using the FDTD (Finite-Difference Time-Domain) method. Tests were done for Gaussian beam propagation with a hard source antenna, utilizing the parallel processing capabilities of the NVIDIA K20M. In the current study, we have modified the 3-D code to include a soft source antenna and an induced current density based on the cold plasma approximation. Results from Gaussian beam propagation in an inhomogeneous anisotropic plasma, along with comparisons to ray- and beam-tracing calculations will be presented. Additional enhancements, such as advanced coding techniques for improved speedup, will also be investigated. Supported by U.S. DoE Grant DE-FG02-99-ER54527 and in part by the U.S. DoE, Office of Science, WDTS under the Science Undergraduate Laboratory Internship program.

  9. Users manual for the NASA Lewis three-dimensional ice accretion code (LEWICE 3D)

    NASA Technical Reports Server (NTRS)

    Bidwell, Colin S.; Potapczuk, Mark G.

    1993-01-01

    A description of the methodology, the algorithms, and the input and output data along with an example case for the NASA Lewis 3D ice accretion code (LEWICE3D) has been produced. The manual has been designed to help the user understand the capabilities, the methodologies, and the use of the code. The LEWICE3D code is a conglomeration of several codes for the purpose of calculating ice shapes on three-dimensional external surfaces. A three-dimensional external flow panel code is incorporated which has the capability of calculating flow about arbitrary 3D lifting and nonlifting bodies with external flow. A fourth order Runge-Kutta integration scheme is used to calculate arbitrary streamlines. An Adams type predictor-corrector trajectory integration scheme has been included to calculate arbitrary trajectories. Schemes for calculating tangent trajectories, collection efficiencies, and concentration factors for arbitrary regions of interest for single droplets or droplet distributions have been incorporated. A LEWICE 2D based heat transfer algorithm can be used to calculate ice accretions along surface streamlines. A geometry modification scheme is incorporated which calculates the new geometry based on the ice accretions generated at each section of interest. The three-dimensional ice accretion calculation is based on the LEWICE 2D calculation. Both codes calculate the flow, pressure distribution, and collection efficiency distribution along surface streamlines. For both codes the heat transfer calculation is divided into two regions, one above the stagnation point and one below the stagnation point, and solved for each region assuming a flat plate with pressure distribution. Water is assumed to follow the surface streamlines, hence starting at the stagnation zone any water that is not frozen out at a control volume is assumed to run back into the next control volume. After the amount of frozen water at each control volume has been calculated the geometry is modified by

  10. Comparison of a 3-D GPU-Assisted Maxwell Code and Ray Tracing for Reflectometry on ITER

    NASA Astrophysics Data System (ADS)

    Gady, Sarah; Kubota, Shigeyuki; Johnson, Irena

    2015-11-01

    Electromagnetic wave propagation and scattering in magnetized plasmas are important diagnostics for high temperature plasmas. 1-D and 2-D full-wave codes are standard tools for measurements of the electron density profile and fluctuations; however, ray tracing results have shown that beam propagation in tokamak plasmas is inherently a 3-D problem. The GPU-Assisted Maxwell Code utilizes the FDTD (Finite-Difference Time-Domain) method for solving the Maxwell equations with the cold plasma approximation in a 3-D geometry. Parallel processing with GPGPU (General-Purpose computing on Graphics Processing Units) is used to accelerate the computation. Previously, we reported on initial comparisons of the code results to 1-D numerical and analytical solutions, where the size of the computational grid was limited by the on-board memory of the GPU. In the current study, this limitation is overcome by using domain decomposition and an additional GPU. As a practical application, this code is used to study the current design of the ITER Low Field Side Reflectometer (LSFR) for the Equatorial Port Plug 11 (EPP11). A detailed examination of Gaussian beam propagation in the ITER edge plasma will be presented, as well as comparisons with ray tracing. This work was made possible by funding from the Department of Energy for the Summer Undergraduate Laboratory Internship (SULI) program. This work is supported by the US DOE Contract No.DE-AC02-09CH11466 and DE-FG02-99-ER54527.

  11. Implementation of a kappa-epsilon turbulence model to RPLUS3D code

    NASA Technical Reports Server (NTRS)

    Chitsomboon, Tawit

    1992-01-01

    The RPLUS3D code has been developed at the NASA Lewis Research Center to support the National Aerospace Plane (NASP) project. The code has the ability to solve three dimensional flowfields with finite rate combustion of hydrogen and air. The combustion process of the hydrogen-air system are simulated by an 18 reaction path, 8 species chemical kinetic mechanism. The code uses a Lower-Upper (LU) decomposition numerical algorithm as its basis, making it a very efficient and robust code. Except for the Jacobian matrix for the implicit chemistry source terms, there is no inversion of a matrix even though a fully implicit numerical algorithm is used. A k-epsilon turbulence model has recently been incorporated into the code. Initial validations have been conducted for a flow over a flat plate. Results of the validation studies are shown. Some difficulties in implementing the k-epsilon equations to the code are also discussed.

  12. Computed 3D visualisation of an extinct cephalopod using computer tomographs

    NASA Astrophysics Data System (ADS)

    Lukeneder, Alexander

    2012-08-01

    The first 3D visualisation of a heteromorph cephalopod species from the Southern Alps (Dolomites, northern Italy) is presented. Computed tomography, palaeontological data and 3D reconstructions were included in the production of a movie, which shows a life reconstruction of the extinct organism. This detailed reconstruction is according to the current knowledge of the shape and mode of life as well as habitat of this animal. The results are based on the most complete shell known thus far of the genus Dissimilites. Object-based combined analyses from computed tomography and various computed 3D facility programmes help to understand morphological details as well as their ontogentical changes in fossil material. In this study, an additional goal was to show changes in locomotion during different ontogenetic phases of such fossil, marine shell-bearing animals (ammonoids). Hence, the presented models and tools can serve as starting points for discussions on morphology and locomotion of extinct cephalopods in general, and of the genus Dissimilites in particular. The heteromorph ammonoid genus Dissimilites is interpreted here as an active swimmer of the Tethyan Ocean. This study portrays non-destructive methods of 3D visualisation applied on palaeontological material, starting with computed tomography resulting in animated, high-quality video clips. The here presented 3D geometrical models and animation, which are based on palaeontological material, demonstrate the wide range of applications, analytical techniques and also outline possible limitations of 3D models in earth sciences and palaeontology. The realistic 3D models and motion pictures can easily be shared amongst palaeontologists. Data, images and short clips can be discussed online and, if necessary, adapted in morphological details and motion-style to better represent the cephalopod animal.

  13. Computed 3D visualisation of an extinct cephalopod using computer tomographs

    PubMed Central

    Lukeneder, Alexander

    2012-01-01

    The first 3D visualisation of a heteromorph cephalopod species from the Southern Alps (Dolomites, northern Italy) is presented. Computed tomography, palaeontological data and 3D reconstructions were included in the production of a movie, which shows a life reconstruction of the extinct organism. This detailed reconstruction is according to the current knowledge of the shape and mode of life as well as habitat of this animal. The results are based on the most complete shell known thus far of the genus Dissimilites. Object-based combined analyses from computed tomography and various computed 3D facility programmes help to understand morphological details as well as their ontogentical changes in fossil material. In this study, an additional goal was to show changes in locomotion during different ontogenetic phases of such fossil, marine shell-bearing animals (ammonoids). Hence, the presented models and tools can serve as starting points for discussions on morphology and locomotion of extinct cephalopods in general, and of the genus Dissimilites in particular. The heteromorph ammonoid genus Dissimilites is interpreted here as an active swimmer of the Tethyan Ocean. This study portrays non-destructive methods of 3D visualisation applied on palaeontological material, starting with computed tomography resulting in animated, high-quality video clips. The here presented 3D geometrical models and animation, which are based on palaeontological material, demonstrate the wide range of applications, analytical techniques and also outline possible limitations of 3D models in earth sciences and palaeontology. The realistic 3D models and motion pictures can easily be shared amongst palaeontologists. Data, images and short clips can be discussed online and, if necessary, adapted in morphological details and motion-style to better represent the cephalopod animal. PMID:24850976

  14. Computed 3D visualisation of an extinct cephalopod using computer tomographs.

    PubMed

    Lukeneder, Alexander

    2012-08-01

    The first 3D visualisation of a heteromorph cephalopod species from the Southern Alps (Dolomites, northern Italy) is presented. Computed tomography, palaeontological data and 3D reconstructions were included in the production of a movie, which shows a life reconstruction of the extinct organism. This detailed reconstruction is according to the current knowledge of the shape and mode of life as well as habitat of this animal. The results are based on the most complete shell known thus far of the genus Dissimilites. Object-based combined analyses from computed tomography and various computed 3D facility programmes help to understand morphological details as well as their ontogentical changes in fossil material. In this study, an additional goal was to show changes in locomotion during different ontogenetic phases of such fossil, marine shell-bearing animals (ammonoids). Hence, the presented models and tools can serve as starting points for discussions on morphology and locomotion of extinct cephalopods in general, and of the genus Dissimilites in particular. The heteromorph ammonoid genus Dissimilites is interpreted here as an active swimmer of the Tethyan Ocean. This study portrays non-destructive methods of 3D visualisation applied on palaeontological material, starting with computed tomography resulting in animated, high-quality video clips. The here presented 3D geometrical models and animation, which are based on palaeontological material, demonstrate the wide range of applications, analytical techniques and also outline possible limitations of 3D models in earth sciences and palaeontology. The realistic 3D models and motion pictures can easily be shared amongst palaeontologists. Data, images and short clips can be discussed online and, if necessary, adapted in morphological details and motion-style to better represent the cephalopod animal. PMID:24850976

  15. Edge Transport Modeling using the 3D EMC3-Eirene code on Tokamaks and Stellarators

    NASA Astrophysics Data System (ADS)

    Lore, J. D.; Ahn, J. W.; Briesemeister, A.; Ferraro, N.; Labombard, B.; McLean, A.; Reinke, M.; Shafer, M.; Terry, J.

    2015-11-01

    The fluid plasma edge transport code EMC3-Eirene has been applied to aid data interpretation and understanding the results of experiments with 3D effects on several tokamaks. These include applied and intrinsic 3D magnetic fields, 3D plasma facing components, and toroidally and poloidally localized heat and particle sources. On Alcator C-Mod, a series of experiments explored the impact of toroidally and poloidally localized impurity gas injection on core confinement and asymmetries in the divertor fluxes, with the differences between the asymmetry in L-mode and H-mode qualitatively reproduced in the simulations due to changes in the impurity ionization in the private flux region. Modeling of NSTX experiments on the effect of 3D fields on detachment matched the trend of a higher density at which the detachment occurs when 3D fields are applied. On DIII-D, different magnetic field models were used in the simulation and compared against the 2D Thomson scattering diagnostic. In simulating each device different aspects of the code model are tested pointing to areas where the model must be further developed. The application to stellarator experiments will also be discussed. Work supported by U.S. DOE: DE-AC05-00OR22725, DE AC02-09CH11466, DE-FC02-99ER54512, and DE-FC02-04ER54698.

  16. Numerical simulation of jet aerodynamics using the three-dimensional Navier-Stokes code PAB3D

    NASA Technical Reports Server (NTRS)

    Pao, S. Paul; Abdol-Hamid, Khaled S.

    1996-01-01

    This report presents a unified method for subsonic and supersonic jet analysis using the three-dimensional Navier-Stokes code PAB3D. The Navier-Stokes code was used to obtain solutions for axisymmetric jets with on-design operating conditions at Mach numbers ranging from 0.6 to 3.0, supersonic jets containing weak shocks and Mach disks, and supersonic jets with nonaxisymmetric nozzle exit geometries. This report discusses computational methods, code implementation, computed results, and comparisons with available experimental data. Very good agreement is shown between the numerical solutions and available experimental data over a wide range of operating conditions. The Navier-Stokes method using the standard Jones-Launder two-equation kappa-epsilon turbulence model can accurately predict jet flow, and such predictions are made without any modification to the published constants for the turbulence model.

  17. tomo3d: a new 3-D joint refraction and reflection travel-time tomography code for active-source seismic data

    NASA Astrophysics Data System (ADS)

    Meléndez, A.; Korenaga, J.; Sallares, V.; Ranero, C. R.

    2012-12-01

    We present the development state of tomo3d, a code for three-dimensional refraction and reflection travel-time tomography of wide-angle seismic data based on the previous two-dimensional version of the code, tomo2d. The core of both forward and inverse problems is inherited from the 2-D version. The ray tracing is performed by a hybrid method combining the graph and bending methods. The graph method finds an ordered array of discrete model nodes, which satisfies Fermat's principle, that is, whose corresponding travel time is a global minimum within the space of discrete nodal connections. The bending method is then applied to produce a more accurate ray path by using the nodes as support points for an interpolation with beta-splines. Travel time tomography is formulated as an iterative linearized inversion, and each step is solved using an LSQR algorithm. In order to avoid the singularity of the sensitivity kernel and to reduce the instability of inversion, regularization parameters are introduced in the inversion in the form of smoothing and damping constraints. Velocity models are built as 3-D meshes, and velocity values at intermediate locations are obtained by trilinear interpolation within the corresponding pseudo-cubic cell. Meshes are sheared to account for topographic relief. A floating reflector is represented by a 2-D grid, and depths at intermediate locations are calculated by bilinear interpolation within the corresponding square cell. The trade-off between the resolution of the final model and the associated computational cost is controlled by the relation between the selected forward star for the graph method (i.e. the number of nodes that each node considers as its neighbors) and the refinement of the velocity mesh. Including reflected phases is advantageous because it provides a better coverage and allows us to define the geometry of those geological interfaces with velocity contrasts sharp enough to be observed on record sections. The code also

  18. Reeds computer code

    NASA Technical Reports Server (NTRS)

    Bjork, C.

    1981-01-01

    The REEDS (rocket exhaust effluent diffusion single layer) computer code is used for the estimation of certain rocket exhaust effluent concentrations and dosages and their distributions near the Earth's surface following a rocket launch event. Output from REEDS is used in producing near real time air quality and environmental assessments of the effects of certain potentially harmful effluents, namely HCl, Al2O3, CO, and NO.

  19. Learning Projectile Motion with the Computer Game ``Scorched 3D``

    NASA Astrophysics Data System (ADS)

    Jurcevic, John S.

    2008-01-01

    For most of our students, video games are a normal part of their lives. We should take advantage of this medium to teach physics in a manner that is engrossing for our students. In particular, modern video games incorporate accurate physics in their game engines, and they allow us to visualize the physics through flashy and captivating graphics. I recently used the game "Scorched 3D" to help my students understand projectile motion.

  20. Computation of optimized arrays for 3-D electrical imaging surveys

    NASA Astrophysics Data System (ADS)

    Loke, M. H.; Wilkinson, P. B.; Uhlemann, S. S.; Chambers, J. E.; Oxby, L. S.

    2014-12-01

    3-D electrical resistivity surveys and inversion models are required to accurately resolve structures in areas with very complex geology where 2-D models might suffer from artefacts. Many 3-D surveys use a grid where the number of electrodes along one direction (x) is much greater than in the perpendicular direction (y). Frequently, due to limitations in the number of independent electrodes in the multi-electrode system, the surveys use a roll-along system with a small number of parallel survey lines aligned along the x-direction. The `Compare R' array optimization method previously used for 2-D surveys is adapted for such 3-D surveys. Offset versions of the inline arrays used in 2-D surveys are included in the number of possible arrays (the comprehensive data set) to improve the sensitivity to structures in between the lines. The array geometric factor and its relative error are used to filter out potentially unstable arrays in the construction of the comprehensive data set. Comparisons of the conventional (consisting of dipole-dipole and Wenner-Schlumberger arrays) and optimized arrays are made using a synthetic model and experimental measurements in a tank. The tests show that structures located between the lines are better resolved with the optimized arrays. The optimized arrays also have significantly better depth resolution compared to the conventional arrays.

  1. Unsteady Analysis of Inlet-Compressor Acoustic Interactions Using Coupled 3-D and 1-D CFD Codes

    NASA Technical Reports Server (NTRS)

    Suresh, A.; Cole, G. L.

    2000-01-01

    It is well known that the dynamic response of a mixed compression supersonic inlet is very sensitive to the boundary condition imposed at the subsonic exit (engine face) of the inlet. In previous work, a 3-D computational fluid dynamics (CFD) inlet code (NPARC) was coupled at the engine face to a 3-D turbomachinery code (ADPAC) simulating an isolated rotor and the coupled simulation used to study the unsteady response of the inlet. The main problem with this approach is that the high fidelity turbomachinery simulation becomes prohibitively expensive as more stages are included in the simulation. In this paper, an alternative approach is explored, wherein the inlet code is coupled to a lesser fidelity 1-D transient compressor code (DYNTECC) which simulates the whole compressor. The specific application chosen for this evaluation is the collapsing bump experiment performed at the University of Cincinnati, wherein reflections of a large-amplitude acoustic pulse from a compressor were measured. The metrics for comparison are the pulse strength (time integral of the pulse amplitude) and wave form (shape). When the compressor is modeled by stage characteristics the computed strength is about ten percent greater than that for the experiment, but the wave shapes are in poor agreement. An alternate approach that uses a fixed rise in duct total pressure and temperature (so-called 'lossy' duct) to simulate a compressor gives good pulse shapes but the strength is about 30 percent low.

  2. Equation-of-State Test Suite for the DYNA3D Code

    SciTech Connect

    Benjamin, Russell D.

    2015-11-05

    This document describes the creation and implementation of a test suite for the Equationof- State models in the DYNA3D code. A customized input deck has been created for each model, as well as a script that extracts the relevant data from the high-speed edit file created by DYNA3D. Each equation-of-state model is broken apart and individual elements of the model are tested, as well as testing the entire model. The input deck for each model is described and the results of the tests are discussed. The intent of this work is to add this test suite to the validation suite presently used for DYNA3D.

  3. Status report on the 'Merging' of the Electron-Cloud Code POSINST with the 3-D Accelerator PIC CODE WARP

    SciTech Connect

    Vay, J.-L.; Furman, M.A.; Azevedo, A.W.; Cohen, R.H.; Friedman, A.; Grote, D.P.; Stoltz, P.H.

    2004-04-19

    We have integrated the electron-cloud code POSINST [1] with WARP [2]--a 3-D parallel Particle-In-Cell accelerator code developed for Heavy Ion Inertial Fusion--so that the two can interoperate. Both codes are run in the same process, communicate through a Python interpreter (already used in WARP), and share certain key arrays (so far, particle positions and velocities). Currently, POSINST provides primary and secondary sources of electrons, beam bunch kicks, a particle mover, and diagnostics. WARP provides the field solvers and diagnostics. Secondary emission routines are provided by the Tech-X package CMEE.

  4. Object-adaptive depth compensated inter prediction for depth video coding in 3D video system

    NASA Astrophysics Data System (ADS)

    Kang, Min-Koo; Lee, Jaejoon; Lim, Ilsoon; Ho, Yo-Sung

    2011-01-01

    Nowadays, the 3D video system using the MVD (multi-view video plus depth) data format is being actively studied. The system has many advantages with respect to virtual view synthesis such as an auto-stereoscopic functionality, but compression of huge input data remains a problem. Therefore, efficient 3D data compression is extremely important in the system, and problems of low temporal consistency and viewpoint correlation should be resolved for efficient depth video coding. In this paper, we propose an object-adaptive depth compensated inter prediction method to resolve the problems where object-adaptive mean-depth difference between a current block, to be coded, and a reference block are compensated during inter prediction. In addition, unique properties of depth video are exploited to reduce side information required for signaling decoder to conduct the same process. To evaluate the coding performance, we have implemented the proposed method into MVC (multiview video coding) reference software, JMVC 8.2. Experimental results have demonstrated that our proposed method is especially efficient for depth videos estimated by DERS (depth estimation reference software) discussed in the MPEG 3DV coding group. The coding gain was up to 11.69% bit-saving, and it was even increased when we evaluated it on synthesized views of virtual viewpoints.

  5. Finite Orbit Width versions of the CQL3D code: Hybrid-FOW and Full-FOW

    NASA Astrophysics Data System (ADS)

    Petrov, Yu. V.; Harvey, R. W.

    2012-10-01

    Finite-Orbit-Width (FOW) effects are being added into the CQL3D bounce-averaged Fokker-Planck code [1] using two main options. In the Hybrid-FOW option, partial FOW capabilities are implemented which add FOW features into the particle source (NB) operator, RF quasilinear operator, diagnostics, and guiding center orbit losses with gyro-radius correction. Collisions remain Zero-Orbit-Width (ZOW). The Hybrid-FOW version provides a greatly improved agreement with signals measured by the NSTX Fast Ion Diagnostic [2]. The advantage of the Hybrid-FOW version is that run time increases by only a factor of two compared to ZOW runs. The Full-FOW option further adds neoclassical radial transport features into the FP coding. The collisional coefficients are averaged along guiding center orbits, with a proper transformation matrix from local coordinates to the midplane coordinates, where the FP equation is solved. All radial terms are included. The computations are parallelized in velocity-grid index, typically using 128 CPU cores. We emphasize that this theory includes nonthermal and full-orbit, not first order correction, neoclassical theory. [4pt] [1] R.W. Harvey and M. McCoy, ``The CQL3D Fokker Planck Code,'' www.compxco.com/cql3d [0pt] [2] R.W. Harvey, Yu. Petrov, D. Liu, W. Heidbrink, P. Bonoli, this mtg (2012)

  6. The Monte Carlo SRNA-VOX code for 3D proton dose distribution in voxelized geometry using CT data

    NASA Astrophysics Data System (ADS)

    Ilic, Radovan D.; Spasic-Jokic, Vesna; Belicev, Petar; Dragovic, Milos

    2005-03-01

    This paper describes the application of the SRNA Monte Carlo package for proton transport simulations in complex geometry and different material compositions. The SRNA package was developed for 3D dose distribution calculation in proton therapy and dosimetry and it was based on the theory of multiple scattering. The decay of proton induced compound nuclei was simulated by the Russian MSDM model and our own using ICRU 63 data. The developed package consists of two codes: the SRNA-2KG, which simulates proton transport in combinatorial geometry and the SRNA-VOX, which uses the voxelized geometry using the CT data and conversion of the Hounsfield's data to tissue elemental composition. Transition probabilities for both codes are prepared by the SRNADAT code. The simulation of the proton beam characterization by multi-layer Faraday cup, spatial distribution of positron emitters obtained by the SRNA-2KG code and intercomparison of computational codes in radiation dosimetry, indicate immediate application of the Monte Carlo techniques in clinical practice. In this paper, we briefly present the physical model implemented in the SRNA package, the ISTAR proton dose planning software, as well as the results of the numerical experiments with proton beams to obtain 3D dose distribution in the eye and breast tumour.

  7. The Monte Carlo SRNA-VOX code for 3D proton dose distribution in voxelized geometry using CT data.

    PubMed

    Ilić, Radovan D; Spasić-Jokić, Vesna; Belicev, Petar; Dragović, Milos

    2005-03-01

    This paper describes the application of the SRNA Monte Carlo package for proton transport simulations in complex geometry and different material compositions. The SRNA package was developed for 3D dose distribution calculation in proton therapy and dosimetry and it was based on the theory of multiple scattering. The decay of proton induced compound nuclei was simulated by the Russian MSDM model and our own using ICRU 63 data. The developed package consists of two codes: the SRNA-2KG, which simulates proton transport in combinatorial geometry and the SRNA-VOX, which uses the voxelized geometry using the CT data and conversion of the Hounsfield's data to tissue elemental composition. Transition probabilities for both codes are prepared by the SRNADAT code. The simulation of the proton beam characterization by multi-layer Faraday cup, spatial distribution of positron emitters obtained by the SRNA-2KG code and intercomparison of computational codes in radiation dosimetry, indicate immediate application of the Monte Carlo techniques in clinical practice. In this paper, we briefly present the physical model implemented in the SRNA package, the ISTAR proton dose planning software, as well as the results of the numerical experiments with proton beams to obtain 3D dose distribution in the eye and breast tumour. PMID:15798273

  8. Preliminary Results from the Application of Automated Adjoint Code Generation to CFL3D

    NASA Technical Reports Server (NTRS)

    Carle, Alan; Fagan, Mike; Green, Lawrence L.

    1998-01-01

    This report describes preliminary results obtained using an automated adjoint code generator for Fortran to augment a widely-used computational fluid dynamics flow solver to compute derivatives. These preliminary results with this augmented code suggest that, even in its infancy, the automated adjoint code generator can accurately and efficiently deliver derivatives for use in transonic Euler-based aerodynamic shape optimization problems with hundreds to thousands of independent design variables.

  9. MELCOR computer code manuals

    SciTech Connect

    Summers, R.M.; Cole, R.K. Jr.; Smith, R.C.; Stuart, D.S.; Thompson, S.L.; Hodge, S.A.; Hyman, C.R.; Sanders, R.L.

    1995-03-01

    MELCOR is a fully integrated, engineering-level computer code that models the progression of severe accidents in light water reactor nuclear power plants. MELCOR is being developed at Sandia National Laboratories for the U.S. Nuclear Regulatory Commission as a second-generation plant risk assessment tool and the successor to the Source Term Code Package. A broad spectrum of severe accident phenomena in both boiling and pressurized water reactors is treated in MELCOR in a unified framework. These include: thermal-hydraulic response in the reactor coolant system, reactor cavity, containment, and confinement buildings; core heatup, degradation, and relocation; core-concrete attack; hydrogen production, transport, and combustion; fission product release and transport; and the impact of engineered safety features on thermal-hydraulic and radionuclide behavior. Current uses of MELCOR include estimation of severe accident source terms and their sensitivities and uncertainties in a variety of applications. This publication of the MELCOR computer code manuals corresponds to MELCOR 1.8.3, released to users in August, 1994. Volume 1 contains a primer that describes MELCOR`s phenomenological scope, organization (by package), and documentation. The remainder of Volume 1 contains the MELCOR Users Guides, which provide the input instructions and guidelines for each package. Volume 2 contains the MELCOR Reference Manuals, which describe the phenomenological models that have been implemented in each package.

  10. Implementation Of True 3D Cursors In Computer Graphics

    NASA Astrophysics Data System (ADS)

    Butts, David R.; McAllister, David F.

    1988-06-01

    The advances in stereoscopic image display techniques have shown an increased need for real-time interaction with the three-dimensional image. We have developed a prototype real-time stereoscopic cursor to investigate this interaction. The results have pointed out areas where hardware speeds are a limiting factor, as well as areas where various methodologies cause perceptual difficulties. This paper addresses the psychological and perceptual anomalies involved in stereo image techniques, cursor generation and motion, and the use of the device as a 3D drawing and depth measuring tool.

  11. Recent Hydrodynamics Improvements to the RELAP5-3D Code

    SciTech Connect

    Richard A. Riemke; Cliff B. Davis; Richard.R. Schultz

    2009-07-01

    The hydrodynamics section of the RELAP5-3D computer program has been recently improved. Changes were made as follows: (1) improved turbine model, (2) spray model for the pressurizer model, (3) feedwater heater model, (4) radiological transport model, (5) improved pump model, and (6) compressor model.

  12. Preliminary results of 3D dose calculations with MCNP-4B code from a SPECT image.

    PubMed

    Rodríguez Gual, M; Lima, F F; Sospedra Alfonso, R; González González, J; Calderón Marín, C

    2004-01-01

    Interface software was developed to generate the input file to run Monte Carlo MCNP-4B code from medical image in Interfile format version 3.3. The software was tested using a spherical phantom of tomography slides with known cumulated activity distribution in Interfile format generated with IMAGAMMA medical image processing system. The 3D dose calculation obtained with Monte Carlo MCNP-4B code was compared with the voxel S factor method. The results show a relative error between both methods less than 1 %. PMID:15625058

  13. Simulations of implosions with a 3D, parallel, unstructured-grid, radiation-hydrodynamics code

    SciTech Connect

    Kaiser, T B; Milovich, J L; Prasad, M K; Rathkopf, J; Shestakov, A I

    1998-12-28

    An unstructured-grid, radiation-hydrodynamics code is used to simulate implosions. Although most of the problems are spherically symmetric, they are run on 3D, unstructured grids in order to test the code's ability to maintain spherical symmetry of the converging waves. Three problems, of increasing complexity, are presented. In the first, a cold, spherical, ideal gas bubble is imploded by an enclosing high pressure source. For the second, we add non-linear heat conduction and drive the implosion with twelve laser beams centered on the vertices of an icosahedron. In the third problem, a NIF capsule is driven with a Planckian radiation source.

  14. TART97 a coupled neutron-photon 3-D, combinatorial geometry Monte Carlo transport code

    SciTech Connect

    Cullen, D.E.

    1997-11-22

    TART97 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo transport code. This code can on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART97 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART97 is distributed on CD. This CD contains on- line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART97 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART97 and its data riles.

  15. Numerical Simulation of Two-grid Ion Optics Using a 3D Code

    NASA Technical Reports Server (NTRS)

    Anderson, John R.; Katz, Ira; Goebel, Dan

    2004-01-01

    A three-dimensional ion optics code has been developed under NASA's Project Prometheus to model two grid ion optics systems. The code computes the flow of positive ions from the discharge chamber through the ion optics and into the beam downstream of the thruster. The rate at which beam ions interact with background neutral gas to form charge exchange ions is also computed. Charge exchange ion trajectories are computed to determine where they strike the ion optics grid surfaces and to determine the extent of sputter erosion they cause. The code has been used to compute predictions of the erosion pattern and wear rate on the NSTAR ion optics system; the code predicts the shape of the eroded pattern but overestimates the initial wear rate by about 50%. An example of use of the code to estimate the NEXIS thruster accelerator grid life is also presented.

  16. Validation and Comparison of 2D and 3D Codes for Nearshore Motion of Long Waves Using Benchmark Problems

    NASA Astrophysics Data System (ADS)

    Velioǧlu, Deniz; Cevdet Yalçıner, Ahmet; Zaytsev, Andrey

    2016-04-01

    Tsunamis are huge waves with long wave periods and wave lengths that can cause great devastation and loss of life when they strike a coast. The interest in experimental and numerical modeling of tsunami propagation and inundation increased considerably after the 2011 Great East Japan earthquake. In this study, two numerical codes, FLOW 3D and NAMI DANCE, that analyze tsunami propagation and inundation patterns are considered. Flow 3D simulates linear and nonlinear propagating surface waves as well as long waves by solving three-dimensional Navier-Stokes (3D-NS) equations. NAMI DANCE uses finite difference computational method to solve 2D depth-averaged linear and nonlinear forms of shallow water equations (NSWE) in long wave problems, specifically tsunamis. In order to validate these two codes and analyze the differences between 3D-NS and 2D depth-averaged NSWE equations, two benchmark problems are applied. One benchmark problem investigates the runup of long waves over a complex 3D beach. The experimental setup is a 1:400 scale model of Monai Valley located on the west coast of Okushiri Island, Japan. Other benchmark problem is discussed in 2015 National Tsunami Hazard Mitigation Program (NTHMP) Annual meeting in Portland, USA. It is a field dataset, recording the Japan 2011 tsunami in Hilo Harbor, Hawaii. The computed water surface elevation and velocity data are compared with the measured data. The comparisons showed that both codes are in fairly good agreement with each other and benchmark data. The differences between 3D-NS and 2D depth-averaged NSWE equations are highlighted. All results are presented with discussions and comparisons. Acknowledgements: Partial support by Japan-Turkey Joint Research Project by JICA on earthquakes and tsunamis in Marmara Region (JICA SATREPS - MarDiM Project), 603839 ASTARTE Project of EU, UDAP-C-12-14 project of AFAD Turkey, 108Y227, 113M556 and 213M534 projects of TUBITAK Turkey, RAPSODI (CONCERT_Dis-021) of CONCERT

  17. Validation of a Node-Centered Wall Function Model for the Unstructured Flow Code FUN3D

    NASA Technical Reports Server (NTRS)

    Carlson, Jan-Renee; Vasta, Veer N.; White, Jeffery

    2015-01-01

    In this paper, the implementation of two wall function models in the Reynolds averaged Navier-Stokes (RANS) computational uid dynamics (CFD) code FUN3D is described. FUN3D is a node centered method for solving the three-dimensional Navier-Stokes equations on unstructured computational grids. The first wall function model, based on the work of Knopp et al., is used in conjunction with the one-equation turbulence model of Spalart-Allmaras. The second wall function model, also based on the work of Knopp, is used in conjunction with the two-equation k-! turbulence model of Menter. The wall function models compute the wall momentum and energy flux, which are used to weakly enforce the wall velocity and pressure flux boundary conditions in the mean flow momentum and energy equations. These wall conditions are implemented in an implicit form where the contribution of the wall function model to the Jacobian are also included. The boundary conditions of the turbulence transport equations are enforced explicitly (strongly) on all solid boundaries. The use of the wall function models is demonstrated on four test cases: a at plate boundary layer, a subsonic di user, a 2D airfoil, and a 3D semi-span wing. Where possible, different near-wall viscous spacing tactics are examined. Iterative residual convergence was obtained in most cases. Solution results are compared with theoretical and experimental data for several variations of grid spacing. In general, very good comparisons with data were achieved.

  18. tomo3d: a new 3-D joint refraction and reflection travel-time tomography code for active-source seismic data

    NASA Astrophysics Data System (ADS)

    Meléndez, A.; Korenaga, J.; Sallarès, V.; Ranero, C. R.

    2012-04-01

    We present the development state of tomo3d, a code for three-dimensional refraction and reflection travel-time tomography of wide-angle seismic data based on the previous two-dimensional version of the code, tomo2d. The core of both forward and inverse problems is inherited from the 2-D version. The ray tracing is performed by a hybrid method combining the graph and bending methods. The graph method finds an ordered array of discrete model nodes, which satisfies Fermat's principle, that is, whose corresponding travel time is a global minimum within the space of discrete nodal connections. The bending method is then applied to produce a more accurate ray path by using the nodes as support points for an interpolation with beta-splines. Travel time tomography is formulated as an iterative linearized inversion, and each step is solved using an LSQR algorithm. In order to avoid the singularity of the sensitivity kernel and to reduce the instability of inversion, regularization parameters are introduced in the inversion in the form of smoothing and damping constraints. Velocity models are built as 3-D meshes, and velocity values at intermediate locations are obtained by trilinear interpolation within the corresponding pseudo-cubic cell. Meshes are sheared to account for topographic relief. A floating reflector is represented by a 2-D grid, and depths at intermediate locations are calculated by bilinear interpolation within the corresponding square cell. The trade-off between the resolution of the final model and the associated computational cost is controlled by the relation between the selected forward star for the graph method (i.e. the number of nodes that each node considers as its neighbors) and the refinement of the velocity mesh. Including reflected phases is advantageous because it provides a better coverage and allows us to define the geometry of those geological interfaces with velocity contrasts sharp enough to be observed on record sections. The code also

  19. Modular Approaches to Earth Science Scientific Computing: 3D Electromagnetic Induction Modeling as an Example

    NASA Astrophysics Data System (ADS)

    Tandon, K.; Egbert, G.; Siripunvaraporn, W.

    2003-12-01

    We are developing a modular system for three-dimensional inversion of electromagnetic (EM) induction data, using an object oriented programming approach. This approach allows us to modify the individual components of the inversion scheme proposed, and also reuse the components for variety of problems in earth science computing howsoever diverse they might be. In particular, the modularity allows us to (a) change modeling codes independently of inversion algorithm details; (b) experiment with new inversion algorithms; and (c) modify the way prior information is imposed in the inversion to test competing hypothesis and techniques required to solve an earth science problem. Our initial code development is for EM induction equations on a staggered grid, using iterative solution techniques in 3D. An example illustrated here is an experiment with the sensitivity of 3D magnetotelluric inversion to uncertainties in the boundary conditions required for regional induction problems. These boundary conditions should reflect the large-scale geoelectric structure of the study area, which is usually poorly constrained. In general for inversion of MT data, one fixes boundary conditions at the edge of the model domain, and adjusts the earth?s conductivity structure within the modeling domain. Allowing for errors in specification of the open boundary values is simple in principle, but no existing inversion codes that we are aware of have this feature. Adding a feature such as this is straightforward within the context of the modular approach. More generally, a modular approach provides an efficient methodology for setting up earth science computing problems to test various ideas. As a concrete illustration relevant to EM induction problems, we investigate the sensitivity of MT data near San Andreas Fault at Parkfield (California) to uncertainties in the regional geoelectric structure.

  20. Parameterized code SHARM-3D for radiative transfer over inhomogeneous surfaces

    NASA Astrophysics Data System (ADS)

    Lyapustin, Alexei; Wang, Yujie

    2005-12-01

    The code SHARM-3D, developed for fast and accurate simulations of the monochromatic radiance at the top of the atmosphere over spatially variable surfaces with Lambertian or anisotropic reflectance, is described. The atmosphere is assumed to be laterally uniform across the image and to consist of two layers with aerosols contained in the bottom layer. The SHARM-3D code performs simultaneous calculations for all specified incidence-view geometries and multiple wavelengths in one run. The numerical efficiency of the current version of code is close to its potential limit and is achieved by means of two innovations. The first is the development of a comprehensive precomputed lookup table of the three-dimensional atmospheric optical transfer function for various atmospheric conditions. The second is the use of a linear kernel model of the land surface bidirectional reflectance factor (BRF) in our algorithm that has led to a fully parameterized solution in terms of the surface BRF parameters. The code is also able to model inland lakes and rivers. The water pixels are described with the Nakajima-Tanaka BRF model of wind-roughened water surface with a Lambertian offset, which is designed to model approximately the reflectance of suspended matter and of a shallow lake or river bottom.

  1. Acoustic Scattering by Three-Dimensional Stators and Rotors Using the SOURCE3D Code. Volume 1; Analysis and Results

    NASA Technical Reports Server (NTRS)

    Meyer, Harold D.

    1999-01-01

    This report provides a study of rotor and stator scattering using the SOURCE3D Rotor Wake/Stator Interaction Code. SOURCE3D is a quasi-three-dimensional computer program that uses three-dimensional acoustics and two-dimensional cascade load response theory to calculate rotor and stator modal reflection and transmission (scattering) coefficients. SOURCE3D is at the core of the TFaNS (Theoretical Fan Noise Design/Prediction System), developed for NASA, which provides complete fully coupled (inlet, rotor, stator, exit) noise solutions for turbofan engines. The reason for studying scattering is that we must first understand the behavior of the individual scattering coefficients provided by SOURCE3D, before eventually understanding the more complicated predictions from TFaNS. To study scattering, we have derived a large number of scattering curves for vane and blade rows. The curves are plots of output wave power divided by input wave power (in dB units) versus vane/blade ratio. Some of these plots are shown in this report. All of the plots are provided in a separate volume. To assist in understanding the plots, formulas have been derived for special vane/blade ratios for which wavefronts are either parallel or normal to rotor or stator chords. From the plots, we have found that, for the most part, there was strong transmission and weak reflection over most of the vane/blade ratio range for the stator. For the rotor, there was little transmission loss.

  2. A 3-D Vortex Code for Parachute Flow Predictions: VIPAR Version 1.0

    SciTech Connect

    STRICKLAND, JAMES H.; HOMICZ, GREGORY F.; PORTER, VICKI L.; GOSSLER, ALBERT A.

    2002-07-01

    This report describes a 3-D fluid mechanics code for predicting flow past bluff bodies whose surfaces can be assumed to be made up of shell elements that are simply connected. Version 1.0 of the VIPAR code (Vortex Inflation PARachute code) is described herein. This version contains several first order algorithms that we are in the process of replacing with higher order ones. These enhancements will appear in the next version of VIPAR. The present code contains a motion generator that can be used to produce a large class of rigid body motions. The present code has also been fully coupled to a structural dynamics code in which the geometry undergoes large time dependent deformations. Initial surface geometry is generated from triangular shell elements using a code such as Patran and is written into an ExodusII database file for subsequent input into VIPAR. Surface and wake variable information is output into two ExodusII files that can be post processed and viewed using software such as EnSight{trademark}.

  3. PRONTO3D users` instructions: A transient dynamic code for nonlinear structural analysis

    SciTech Connect

    Attaway, S.W.; Mello, F.J.; Heinstein, M.W.; Swegle, J.W.; Ratner, J.A.; Zadoks, R.I.

    1998-06-01

    This report provides an updated set of users` instructions for PRONTO3D. PRONTO3D is a three-dimensional, transient, solid dynamics code for analyzing large deformations of highly nonlinear materials subjected to extremely high strain rates. This Lagrangian finite element program uses an explicit time integration operator to integrate the equations of motion. Eight-node, uniform strain, hexahedral elements and four-node, quadrilateral, uniform strain shells are used in the finite element formulation. An adaptive time step control algorithm is used to improve stability and performance in plasticity problems. Hourglass distortions can be eliminated without disturbing the finite element solution using either the Flanagan-Belytschko hourglass control scheme or an assumed strain hourglass control scheme. All constitutive models in PRONTO3D are cast in an unrotated configuration defined using the rotation determined from the polar decomposition of the deformation gradient. A robust contact algorithm allows for the impact and interaction of deforming contact surfaces of quite general geometry. The Smooth Particle Hydrodynamics method has been embedded into PRONTO3D using the contact algorithm to couple it with the finite element method.

  4. A 3d particle simulation code for heavy ion fusion accelerator studies

    SciTech Connect

    Friedman, A.; Bangerter, R.O.; Callahan, D.A.; Grote, D.P.; Langdon, A.B. ); Haber, I. )

    1990-06-08

    We describe WARP, a new particle-in-cell code being developed and optimized for ion beam studies in true geometry. We seek to model transport around bends, axial compression with strong focusing, multiple beamlet interaction, and other inherently 3d processes that affect emittance growth. Constraints imposed by memory and running time are severe. Thus, we employ only two 3d field arrays ({rho} and {phi}), and difference {phi} directly on each particle to get E, rather than interpolating E from three meshes; use of a single 3d array is feasible. A new method for PIC simulation of bent beams follows the beam particles in a family of rotated laboratory frames, thus straightening'' the bends. We are also incorporating an envelope calculation, an (r, z) model, and 1d (axial) model within WARP. The BASIS development and run-time system is used, providing a powerful interactive environment in which the user has access to all variables in the code database. 10 refs., 3 figs.

  5. The future of 3D and video coding in mobile and the internet

    NASA Astrophysics Data System (ADS)

    Bivolarski, Lazar

    2013-09-01

    The current Internet success has already changed our social and economic world and is still continuing to revolutionize the information exchange. The exponential increase of amount and types of data that is currently exchanged on the Internet represents significant challenge for the design of future architectures and solutions. This paper reviews the current status and trends in the design of solutions and research activities in the future Internet from point of view of managing the growth of bandwidth requirements and complexity of the multimedia that is being created and shared. Outlines the challenges that are present before the video coding and approaches to the design of standardized media formats and protocols while considering the expected convergence of multimedia formats and exchange interfaces. The rapid growth of connected mobile devices adds to the current and the future challenges in combination with the expected, in near future, arrival of multitude of connected devices. The new Internet technologies connecting the Internet of Things with wireless visual sensor networks and 3D virtual worlds requires conceptually new approaches of media content handling from acquisition to presentation in the 3D Media Internet. Accounting for the entire transmission system properties and enabling adaptation in real-time to context and content throughout the media proceeding path will be paramount in enabling the new media architectures as well as the new applications and services. The common video coding formats will need to be conceptually redesigned to allow for the implementation of the necessary 3D Media Internet features.

  6. Spacecraft charging analysis with the implicit particle-in-cell code iPic3D

    SciTech Connect

    Deca, J.; Lapenta, G.; Marchand, R.; Markidis, S.

    2013-10-15

    We present the first results on the analysis of spacecraft charging with the implicit particle-in-cell code iPic3D, designed for running on massively parallel supercomputers. The numerical algorithm is presented, highlighting the implementation of the electrostatic solver and the immersed boundary algorithm; the latter which creates the possibility to handle complex spacecraft geometries. As a first step in the verification process, a comparison is made between the floating potential obtained with iPic3D and with Orbital Motion Limited theory for a spherical particle in a uniform stationary plasma. Second, the numerical model is verified for a CubeSat benchmark by comparing simulation results with those of PTetra for space environment conditions with increasing levels of complexity. In particular, we consider spacecraft charging from plasma particle collection, photoelectron and secondary electron emission. The influence of a background magnetic field on the floating potential profile near the spacecraft is also considered. Although the numerical approaches in iPic3D and PTetra are rather different, good agreement is found between the two models, raising the level of confidence in both codes to predict and evaluate the complex plasma environment around spacecraft.

  7. The 3d International Workshop on Computational Electronics

    NASA Astrophysics Data System (ADS)

    Goodnick, Stephen M.

    1994-09-01

    The Third International Workshop on Computational Electronics (IWCE) was held at the Benson Hotel in downtown Portland, Oregon, on May 18, 19, and 20, 1994. The workshop was devoted to a broad range of topics in computational electronics related to the simulation of electronic transport in semiconductors and semiconductor devices, particularly those which use large computational resources. The workshop was supported by the National Science Foundation (NSF), the Office of Naval Research and the Army Research Office, as well as local support from the Oregon Joint Graduate Schools of Engineering and the Oregon Center for Advanced Technology Education. There were over 100 participants in the Portland workshop, of which more than one quarter represented research groups outside of the United States from Austria, Canada, France, Germany, Italy, Japan, Switzerland, and the United Kingdom. There were a total 81 papers presented at the workshop, 9 invited talks, 26 oral presentations and 46 poster presentations. The emphasis of the contributions reflected the interdisciplinary nature of computational electronics with researchers from the Chemistry, Computer Science, Mathematics, Engineering, and Physics communities participating in the workshop.

  8. Tools for 3D scientific visualization in computational aerodynamics

    NASA Technical Reports Server (NTRS)

    Bancroft, Gordon; Plessel, Todd; Merritt, Fergus; Watson, Val

    1989-01-01

    The purpose is to describe the tools and techniques in use at the NASA Ames Research Center for performing visualization of computational aerodynamics, for example visualization of flow fields from computer simulations of fluid dynamics about vehicles such as the Space Shuttle. The hardware used for visualization is a high-performance graphics workstation connected to a super computer with a high speed channel. At present, the workstation is a Silicon Graphics IRIS 3130, the supercomputer is a CRAY2, and the high speed channel is a hyperchannel. The three techniques used for visualization are post-processing, tracking, and steering. Post-processing analysis is done after the simulation. Tracking analysis is done during a simulation but is not interactive, whereas steering analysis involves modifying the simulation interactively during the simulation. Using post-processing methods, a flow simulation is executed on a supercomputer and, after the simulation is complete, the results of the simulation are processed for viewing. The software in use and under development at NASA Ames Research Center for performing these types of tasks in computational aerodynamics is described. Workstation performance issues, benchmarking, and high-performance networks for this purpose are also discussed as well as descriptions of other hardware for digital video and film recording.

  9. Computational 3-D Model of the Human Respiratory System

    EPA Science Inventory

    We are developing a comprehensive, morphologically-realistic computational model of the human respiratory system that can be used to study the inhalation, deposition, and clearance of contaminants, while being adaptable for age, race, gender, and health/disease status. The model ...

  10. Tensor3D: A computer graphics program to simulate 3D real-time deformation and visualization of geometric bodies

    NASA Astrophysics Data System (ADS)

    Pallozzi Lavorante, Luca; Dirk Ebert, Hans

    2008-07-01

    Tensor3D is a geometric modeling program with the capacity to simulate and visualize in real-time the deformation, specified through a tensor matrix and applied to triangulated models representing geological bodies. 3D visualization allows the study of deformational processes that are traditionally conducted in 2D, such as simple and pure shears. Besides geometric objects that are immediately available in the program window, the program can read other models from disk, thus being able to import objects created with different open-source or proprietary programs. A strain ellipsoid and a bounding box are simultaneously shown and instantly deformed with the main object. The principal axes of strain are visualized as well to provide graphical information about the orientation of the tensor's normal components. The deformed models can also be saved, retrieved later and deformed again, in order to study different steps of progressive strain, or to make this data available to other programs. The shape of stress ellipsoids and the corresponding Mohr circles defined by any stress tensor can also be represented. The application was written using the Visualization ToolKit, a powerful scientific visualization library in the public domain. This development choice, allied to the use of the Tcl/Tk programming language, which is independent on the host computational platform, makes the program a useful tool for the study of geometric deformations directly in three dimensions in teaching as well as research activities.

  11. Development of a 3-D upwind PNS code for chemically reacting hypersonic flowfields

    NASA Technical Reports Server (NTRS)

    Tannehill, J. C.; Wadawadigi, G.

    1992-01-01

    Two new parabolized Navier-Stokes (PNS) codes were developed to compute the three-dimensional, viscous, chemically reacting flow of air around hypersonic vehicles such as the National Aero-Space Plane (NASP). The first code (TONIC) solves the gas dynamic and species conservation equations in a fully coupled manner using an implicit, approximately-factored, central-difference algorithm. This code was upgraded to include shock fitting and the capability of computing the flow around complex body shapes. The revised TONIC code was validated by computing the chemically-reacting (M(sub infinity) = 25.3) flow around a 10 deg half-angle cone at various angles of attack and the Ames All-Body model at 0 deg angle of attack. The results of these calculations were in good agreement with the results from the UPS code. One of the major drawbacks of the TONIC code is that the central-differencing of fluxes across interior flowfield discontinuities tends to introduce errors into the solution in the form of local flow property oscillations. The second code (UPS), originally developed for a perfect gas, has been extended to permit either perfect gas, equilibrium air, or nonequilibrium air computations. The code solves the PNS equations using a finite-volume, upwind TVD method based on Roe's approximate Riemann solver that was modified to account for real gas effects. The dissipation term associated with this algorithm is sufficiently adaptive to flow conditions that, even when attempting to capture very strong shock waves, no additional smoothing is required. For nonequilibrium calculations, the code solves the fluid dynamic and species continuity equations in a loosely-coupled manner. This code was used to calculate the hypersonic, laminar flow of chemically reacting air over cones at various angles of attack. In addition, the flow around the McDonnel Douglas generic option blended-wing-body was computed and comparisons were made between the perfect gas, equilibrium air, and the

  12. CFD code calibration and inlet-fairing effects on a 3D hypersonic powered-simulation model

    NASA Technical Reports Server (NTRS)

    Huebner, Lawrence D.; Tatum, Kenneth E.

    1993-01-01

    A three-dimensional (3D) computational study has been performed addressing issues related to the wind tunnel testing of a hypersonic powered-simulation model. The study consisted of three objectives. The first objective was to calibrate a state-of-the-art computational fluid dynamics (CFD) code in its ability to predict hypersonic powered-simulation flows by comparing CFD solutions with experimental surface pressure dam. Aftbody lower surface pressures were well predicted, but lower surface wing pressures were less accurately predicted. The second objective was to determine the 3D effects on the aftbody created by fairing over the inlet; this was accomplished by comparing the CFD solutions of two closed-inlet powered configurations with a flowing-inlet powered configuration. Although results at four freestream Mach numbers indicate that the exhaust plume tends to isolate the aftbody surface from most forebody flowfield differences, a smooth inlet fairing provides the least aftbody force and moment variation compared to a flowing inlet. The final objective was to predict and understand the 3D characteristics of exhaust plume development at selected points on a representative flight path. Results showed a dramatic effect of plume expansion onto the wings as the freestream Mach number and corresponding nozzle pressure ratio are increased.

  13. CFD Code Calibration and Inlet-Fairing Effects On a 3D Hypersonic Powered-Simulation Model

    NASA Technical Reports Server (NTRS)

    Huebner, Lawrence D.; Tatum, Kenneth E.

    1993-01-01

    A three-dimensional (3D) computational study has been performed addressing issues related to the wind tunnel testing of a hypersonic powered-simulation model. The study consisted of three objectives. The first objective was to calibrate a state-of-the-art computational fluid dynamics (CFD) code in its ability to predict hypersonic powered-simulation flows by comparing CFD solutions with experimental surface pressure data. Aftbody lower surface pressures were well predicted, but lower surface wing pressures were less accurately predicted. The second objective was to determine the 3D effects on the aftbody created by fairing over the inlet; this was accomplished by comparing the CFD solutions of two closed-inlet powered configurations with a flowing- inlet powered configuration. Although results at four freestream Mach numbers indicate that the exhaust plume tends to isolate the aftbody surface from most forebody flow- field differences, a smooth inlet fairing provides the least aftbody force and moment variation compared to a flowing inlet. The final objective was to predict and understand the 3D characteristics of exhaust plume development at selected points on a representative flight path. Results showed a dramatic effect of plume expansion onto the wings as the freestream Mach number and corresponding nozzle pressure ratio are increased.

  14. Validation of CATHARE 3D Code Against UPTF TRAM C3 Transients

    NASA Astrophysics Data System (ADS)

    Glantz, Tony; Freitas, Roberto

    Within the nuclear reactor safety analysis, one of the events that could potentially lead to a re-criticality accident in case of a Small Break Loss of Coolant Accident (SBLOCA) in a Pressurized Water Reactor (PWR) is a boron dilution scenario followed by a coolant mixing transient. Some UPTF experiments can be interpreted as generic boron dilution experiments. In fact, the UPTF experiments were originally designed to conduct separate effects studies focused on multi-dimensional thermal hydraulic phenomena. However, in the case of experimental program TRAM, some studies are realized on the boron mixing: tests C3. Some of these tests have been used for the validation and assessment of the 3D module of CATHARE code. Results are very satisfying; CATHARE 3D code is able to reproduce correctly the main features of the UPTF TRAM C3 tests, the temperature mixing in the cold leg, the formation of a strong stratification in the upper downcomer, the perfect mixing temperature in the lower downcomer and the strong stratification in the lower plenum. These results are also compared with the CFX5 and TRIO-U codes results on these tests.

  15. An easy implementation of displacement calculations in 3D discrete dislocation dynamics codes

    NASA Astrophysics Data System (ADS)

    Fivel, Marc; Depres, Christophe

    2014-10-01

    Barnett's coordinate-free expression of the displacement field of a triangular loop in an isotropic media is revisited in a view to be implemented in 3D discrete dislocation dynamics codes. A general meshing procedure solving the problems of non-planar loops is presented. The method is user-friendly and can be used in numerical simulations since it gives the contribution of each dislocation segment to the global displacement field without defining the connectivity of closed loops. Easy to implement in parallel calculations, this method is successfully applied to large-scale simulations.

  16. 3D and 4D Simulations of the Dynamics of the Radiation Belts using VERB code

    NASA Astrophysics Data System (ADS)

    Shprits, Yuri; Kellerman, Adam; Drozdov, Alexander; Orlova, Ksenia

    2015-04-01

    Modeling and understanding of ring current and higher energy radiation belts has been a grand challenge since the beginning of the space age. In this study we show long term simulations with a 3D VERB code of modeling the radiation belts with boundary conditions derived from observations around geosynchronous orbit. We also present 4D VERB simulations that include convective transport, radial diffusion, pitch angle scattering and local acceleration. We show that while lower energy radial transport is dominated by the convection and higher energy transport is dominated by the diffusive radial transport. We also show there exists an intermediate range of energies for electrons for which both processes work simultaneously.

  17. Time efficient 3-D electromagnetic modeling on massively parallel computers

    SciTech Connect

    Alumbaugh, D.L.; Newman, G.A.

    1995-08-01

    A numerical modeling algorithm has been developed to simulate the electromagnetic response of a three dimensional earth to a dipole source for frequencies ranging from 100 to 100MHz. The numerical problem is formulated in terms of a frequency domain--modified vector Helmholtz equation for the scattered electric fields. The resulting differential equation is approximated using a staggered finite difference grid which results in a linear system of equations for which the matrix is sparse and complex symmetric. The system of equations is solved using a preconditioned quasi-minimum-residual method. Dirichlet boundary conditions are employed at the edges of the mesh by setting the tangential electric fields equal to zero. At frequencies less than 1MHz, normal grid stretching is employed to mitigate unwanted reflections off the grid boundaries. For frequencies greater than this, absorbing boundary conditions must be employed by making the stretching parameters of the modified vector Helmholtz equation complex which introduces loss at the boundaries. To allow for faster calculation of realistic models, the original serial version of the code has been modified to run on a massively parallel architecture. This modification involves three distinct tasks; (1) mapping the finite difference stencil to a processor stencil which allows for the necessary information to be exchanged between processors that contain adjacent nodes in the model, (2) determining the most efficient method to input the model which is accomplished by dividing the input into ``global`` and ``local`` data and then reading the two sets in differently, and (3) deciding how to output the data which is an inherently nonparallel process.

  18. GEO3D - Three-Dimensional Computer Model of a Ground Source Heat Pump System

    SciTech Connect

    James Menart

    2013-06-07

    This file is the setup file for the computer program GEO3D. GEO3D is a computer program written by Jim Menart to simulate vertical wells in conjunction with a heat pump for ground source heat pump (GSHP) systems. This is a very detailed three-dimensional computer model. This program produces detailed heat transfer and temperature field information for a vertical GSHP system.

  19. Recent advances in 3D computed tomography techniques for simulation and navigation in hepatobiliary pancreatic surgery.

    PubMed

    Uchida, Masafumi

    2014-04-01

    A few years ago it could take several hours to complete a 3D image using a 3D workstation. Thanks to advances in computer science, obtaining results of interest now requires only a few minutes. Many recent 3D workstations or multimedia computers are equipped with onboard 3D virtual patient modeling software, which enables patient-specific preoperative assessment and virtual planning, navigation, and tool positioning. Although medical 3D imaging can now be conducted using various modalities, including computed tomography (CT), magnetic resonance imaging (MRI), positron emission tomography (PET), and ultrasonography (US) among others, the highest quality images are obtained using CT data, and CT images are now the most commonly used source of data for 3D simulation and navigation image. If the 2D source image is bad, no amount of 3D image manipulation in software will provide a quality 3D image. In this exhibition, the recent advances in CT imaging technique and 3D visualization of the hepatobiliary and pancreatic abnormalities are featured, including scan and image reconstruction technique, contrast-enhanced techniques, new application of advanced CT scan techniques, and new virtual reality simulation and navigation imaging. PMID:24464989

  20. FDFD: A 3D Finite-Difference Frequency-Domain Code for Electromagnetic Induction Tomography

    NASA Astrophysics Data System (ADS)

    Champagne, Nathan J.; Berryman, James G.; Buettner, H. Michael

    2001-07-01

    A new 3D code for electromagnetic induction tomography with intended applications to environmental imaging problems has been developed. The approach consists of calculating the fields within a volume using an implicit finite-difference frequency-domain formulation. The volume is terminated by an anisotropic perfectly matched layer region that simulates an infinite domain by absorbing outgoing waves. Extensive validation of this code has been done using analytical and semianalytical results from other codes, and some of those results are presented in this paper. The new code is written in Fortran 90 and is designed to be easily parallelized. Finally, an adjoint field method of data inversion, developed in parallel for solving the fully nonlinear inverse problem for electrical conductivity imaging (e.g., for mapping underground conducting plumes), uses this code to provide solvers for both forward and adjoint fields. Results obtained from this inversion method for high-contrast media are encouraging and provide a significant improvement over those obtained from linearized inversion methods.

  1. Automated design of coupled RF cavities using 2-D and 3-D codes

    SciTech Connect

    Smith, Peter; Christiansen, D. W.; Greninger, P. T.; Spalek, G.

    2001-01-01

    Coupled RF cavities in the Accelerator Production of Tritium Project have been designed using a procedure in which a 2-D code (CCT) searches for a design that meets frequency and coupling requirements, while a 3-D code (HFSS) is used to obtain empirical factors used by CCT to characterize the coupling slot between cavities. Using assumed values of the empirical factors, CCT runs the Superfish code iteratively to solve for a trial cavity design that has a specified frequency and coupling. The frequency shifts and the coupling constant k of the slot are modeled in CCT using a perturbation theory, the results of which are adjusted using the empirical factors. Given a trial design, HFSS is run using periodic boundary conditions to obtain a mode spectrum. The mode spectrum is processed using the DISPER code to obtain values of the coupling and the frequencies with slots. These results are used to calculate a new set of empirical factors, which are fed back into CCT for another design iteration. Cold models have been fabricated and tested to validate the codes, and results will be presented.

  2. 3-D localization of gamma ray sources with coded apertures for medical applications

    NASA Astrophysics Data System (ADS)

    Kaissas, I.; Papadimitropoulos, C.; Karafasoulis, K.; Potiriadis, C.; Lambropoulos, C. P.

    2015-09-01

    Several small gamma cameras for radioguided surgery using CdTe or CdZnTe have parallel or pinhole collimators. Coded aperture imaging is a well-known method for gamma ray source directional identification, applied in astrophysics mainly. The increase in efficiency due to the substitution of the collimators by the coded masks renders the method attractive for gamma probes used in radioguided surgery. We have constructed and operationally verified a setup consisting of two CdTe gamma cameras with Modified Uniform Redundant Array (MURA) coded aperture masks of rank 7 and 19 and a video camera. The 3-D position of point-like radioactive sources is estimated via triangulation using decoded images acquired by the gamma cameras. We have also developed code for both fast and detailed simulations and we have verified the agreement between experimental results and simulations. In this paper we present a simulation study for the spatial localization of two point sources using coded aperture masks with rank 7 and 19.

  3. Investigations on Sawtooth Reconnection in ASDEX Upgrade Tokamak Discharges Using the 3D Non-linear Two-fluid MHD Code M3D-C1

    NASA Astrophysics Data System (ADS)

    Krebs, Isabel; Jardin, Stephen C.; Igochine, Valentin; Guenter, Sibylle; Hoelzl, Matthias; ASDEX Upgrade Team

    2014-10-01

    We study sawtooth reconnection in ASDEX Upgrade tokamak plasmas by means of 3D non-linear two-fluid MHD simulations in toroidal geometry using the high-order finite element code M3D-C1. Parameters and equilibrium of the simulations are based on typical sawtoothing ASDEX Upgrade discharges. The simulation results are compared to features of the experimental observations such as the sawtooth crash time and frequency, the evolution of the safety factor profile and the 3D evolution of the temperature. 2D ECE imaging measurements during sawtooth crashes in ASDEX Upgrade indicate that the heat is transported out of the core through a narrow poloidally localized region. We investigate if incomplete sawtooth reconnection can be seen in the simulations which is suggested by soft X-ray tomography measurements in ASDEX Upgrade showing that an (m = 1, n = 1) perturbation is typically observed to survive the sawtooth crash and approximately maintain its radial position.

  4. Implementation of the 3D edge plasma code EMC3-EIRENE on NSTX

    SciTech Connect

    Lore, J. D.; Canik, J. M.; Feng, Y.; Ahn, J. -W.; Maingi, R.; Soukhanovskii, V.

    2012-05-09

    The 3D edge transport code EMC3-EIRENE has been applied for the first time to the NSTX spherical tokamak. A new disconnected double null grid has been developed to allow the simulation of plasma where the radial separation of the inner and outer separatrix is less than characteristic widths (e.g. heat flux width) at the midplane. Modelling results are presented for both an axisymmetric case and a case where 3D magnetic field is applied in an n = 3 configuration. In the vacuum approximation, the perturbed field consists of a wide region of destroyed flux surfaces and helical lobes which are a mixture of long and short connection length field lines formed by the separatrix manifolds. This structure is reflected in coupled 3D plasma fluid (EMC3) and kinetic neutral particle (EIRENE) simulations. The helical lobes extending inside of the unperturbed separatrix are filled in by hot plasma from the core. The intersection of the lobes with the divertor results in a striated flux footprint pattern on the target plates. As a result, profiles of divertor heat and particle fluxes are compared with experimental data, and possible sources of discrepancy are discussed.

  5. Implementation of the 3D edge plasma code EMC3-EIRENE on NSTX

    DOE PAGESBeta

    Lore, J. D.; Canik, J. M.; Feng, Y.; Ahn, J. -W.; Maingi, R.; Soukhanovskii, V.

    2012-05-09

    The 3D edge transport code EMC3-EIRENE has been applied for the first time to the NSTX spherical tokamak. A new disconnected double null grid has been developed to allow the simulation of plasma where the radial separation of the inner and outer separatrix is less than characteristic widths (e.g. heat flux width) at the midplane. Modelling results are presented for both an axisymmetric case and a case where 3D magnetic field is applied in an n = 3 configuration. In the vacuum approximation, the perturbed field consists of a wide region of destroyed flux surfaces and helical lobes which aremore » a mixture of long and short connection length field lines formed by the separatrix manifolds. This structure is reflected in coupled 3D plasma fluid (EMC3) and kinetic neutral particle (EIRENE) simulations. The helical lobes extending inside of the unperturbed separatrix are filled in by hot plasma from the core. The intersection of the lobes with the divertor results in a striated flux footprint pattern on the target plates. As a result, profiles of divertor heat and particle fluxes are compared with experimental data, and possible sources of discrepancy are discussed.« less

  6. Newly-Developed 3D GRMHD Code and its Application to Jet Formation

    NASA Technical Reports Server (NTRS)

    Mizuno, Y.; Nishikawa, K.-I.; Koide, S.; Hardee, P.; Fishman, G. J.

    2006-01-01

    We have developed a new three-dimensional general relativistic magnetohydrodynamic code by using a conservative, high-resolution shock-capturing scheme. The numerical fluxes are calculated using the HLL approximate Riemann solver scheme. The flux-interpolated constrained transport scheme is used to maintain a divergence-free magnetic field. We have performed various 1-dimensional test problems in both special and general relativity by using several reconstruction methods and found that the new 3D GRMHD code shows substantial improvements over our previous model. The . preliminary results show the jet formations from a geometrically thin accretion disk near a non-rotating and a rotating black hole. We will discuss the jet properties depended on the rotation of a black hole and the magnetic field strength.

  7. Computational time analysis of the numerical solution of 3D electrostatic Poisson's equation

    NASA Astrophysics Data System (ADS)

    Kamboh, Shakeel Ahmed; Labadin, Jane; Rigit, Andrew Ragai Henri; Ling, Tech Chaw; Amur, Khuda Bux; Chaudhary, Muhammad Tayyab

    2015-05-01

    3D Poisson's equation is solved numerically to simulate the electric potential in a prototype design of electrohydrodynamic (EHD) ion-drag micropump. Finite difference method (FDM) is employed to discretize the governing equation. The system of linear equations resulting from FDM is solved iteratively by using the sequential Jacobi (SJ) and sequential Gauss-Seidel (SGS) methods, simulation results are also compared to examine the difference between the results. The main objective was to analyze the computational time required by both the methods with respect to different grid sizes and parallelize the Jacobi method to reduce the computational time. In common, the SGS method is faster than the SJ method but the data parallelism of Jacobi method may produce good speedup over SGS method. In this study, the feasibility of using parallel Jacobi (PJ) method is attempted in relation to SGS method. MATLAB Parallel/Distributed computing environment is used and a parallel code for SJ method is implemented. It was found that for small grid size the SGS method remains dominant over SJ method and PJ method while for large grid size both the sequential methods may take nearly too much processing time to converge. Yet, the PJ method reduces computational time to some extent for large grid sizes.

  8. Cloud4Psi: cloud computing for 3D protein structure similarity searching

    PubMed Central

    Mrozek, Dariusz; Małysiak-Mrozek, Bożena; Kłapciński, Artur

    2014-01-01

    Summary: Popular methods for 3D protein structure similarity searching, especially those that generate high-quality alignments such as Combinatorial Extension (CE) and Flexible structure Alignment by Chaining Aligned fragment pairs allowing Twists (FATCAT) are still time consuming. As a consequence, performing similarity searching against large repositories of structural data requires increased computational resources that are not always available. Cloud computing provides huge amounts of computational power that can be provisioned on a pay-as-you-go basis. We have developed the cloud-based system that allows scaling of the similarity searching process vertically and horizontally. Cloud4Psi (Cloud for Protein Similarity) was tested in the Microsoft Azure cloud environment and provided good, almost linearly proportional acceleration when scaled out onto many computational units. Availability and implementation: Cloud4Psi is available as Software as a Service for testing purposes at: http://cloud4psi.cloudapp.net/. For source code and software availability, please visit the Cloud4Psi project home page at http://zti.polsl.pl/dmrozek/science/cloud4psi.htm. Contact: dariusz.mrozek@polsl.pl PMID:24930141

  9. Computational Study of 3-D Hot-Spot Initiation in Shocked Insensitive High-Explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.

    2011-06-01

    High explosive shock sensitivity is controlled by a combination of mechanical response, thermal properties, and chemical properties. The interplay of these physical phenomena in realistic condensed energetic materials is currently lacking. A multiscale computational framework is developed investigating hot spot (void) ignition in a single crystal of an insensitive HE, TATB. Atomistic MD simulations are performed to provide the key chemical reactions and these reaction rates are used in 3-D multiphysics simulations. The multiphysics code, ALE3D, is linked to the chemistry software, Cheetah, and a three-way coupled approach is pursued including hydrodynamics, thermal and chemical analyses. A single spherical air bubble is embedded in the insensitive HE and its collapse due to shock initiation is evolved numerically in time; while the ignition processes due chemical reactions are studied. Our current predictions showcase several interesting features regarding hot spot dynamics including the formation of a ``secondary'' jet. Results obtained with hydro-thermo-chemical processes leading to ignition growth will be discussed for various pore sizes and different shock pressures. LLNL-ABS-471438. This work performed under the auspices of the U.S. Department of Energy by LLNL under Contract DE-AC52-07NA27344.

  10. STEEP32 computer code

    NASA Technical Reports Server (NTRS)

    Goerke, W. S.

    1972-01-01

    A manual is presented as an aid in using the STEEP32 code. The code is the EXEC 8 version of the STEEP code (STEEP is an acronym for shock two-dimensional Eulerian elastic plastic). The major steps in a STEEP32 run are illustrated in a sample problem. There is a detailed discussion of the internal organization of the code, including a description of each subroutine.

  11. Heat Transfer Boundary Conditions in the RELAP5-3D Code

    SciTech Connect

    Richard A. Riemke; Cliff B. Davis; Richard R. Schultz

    2008-05-01

    The heat transfer boundary conditions used in the RELAP5-3D computer program have evolved over the years. Currently, RELAP5-3D has the following options for the heat transfer boundary conditions: (a) heat transfer correlation package option, (b) non-convective option (from radiation/conduction enclosure model or symmetry/insulated conditions), and (c) other options (setting the surface temperature to a volume fraction averaged fluid temperature of the boundary volume, obtaining the surface temperature from a control variable, obtaining the surface temperature from a time-dependent general table, obtaining the heat flux from a time-dependent general table, or obtaining heat transfer coefficients from either a time- or temperature-dependent general table). These options will be discussed, including the more recent ones.

  12. 3D thermo-chemical-mechanical simulation of power ramps with ALCYONE fuel code

    NASA Astrophysics Data System (ADS)

    Baurens, B.; Sercombe, J.; Riglet-Martial, C.; Desgranges, L.; Trotignon, L.; Maugis, P.

    2014-09-01

    This paper presents the coupling of the fuel performance code ALCYONE with the thermochemical code ANGE and its application to Iodine-Stress Corrosion Cracking (I-SCC). The coupling is illustrated by a 3D simulation of a power ramp. The release of chemically active gases (CsI(g), Tex(13D simulation, the definition of a stress corrosion initiation criterion is discussed. The combination of the hoop stress and of the quantity of reactive iodine (I(g), I2(g) and TeI2(g) only) released by the pellet is used to show that the necessary conditions for Pellet Cladding Interaction-Stress Corrosion Cracking (PCI-SCC) initiation, based on out-of-pile I-SCC laboratory tests criteria, are met during the simulated power transient.

  13. 3-D model-based frame interpolation for distributed video coding of static scenes.

    PubMed

    Maitre, Matthieu; Guillemot, Christine; Morin, Luce

    2007-05-01

    This paper addresses the problem of side information extraction for distributed coding of videos captured by a camera moving in a 3-D static environment. Examples of targeted applications are augmented reality, remote-controlled robots operating in hazardous environments, or remote exploration by drones. It explores the benefits of the structure-from-motion paradigm for distributed coding of this type of video content. Two interpolation methods constrained by the scene geometry, based either on block matching along epipolar lines or on 3-D mesh fitting, are first developed. These techniques are based on a robust algorithm for sub-pel matching of feature points, which leads to semi-dense correspondences between key frames. However, their rate-distortion (RD) performances are limited by misalignments between the side information and the actual Wyner-Ziv (WZ) frames due to the assumption of linear motion between key frames. To cope with this problem, two feature point tracking techniques are introduced, which recover the camera parameters of the WZ frames. A first technique, in which the frames remain encoded separately, performs tracking at the decoder and leads to significant RD performance gains. A second technique further improves the RD performances by allowing a limited tracking at the encoder. As an additional benefit, statistics on tracks allow the encoder to adapt the key frame frequency to the video motion content. PMID:17491456

  14. Radiation Coupling with the FUN3D Unstructured-Grid CFD Code

    NASA Technical Reports Server (NTRS)

    Wood, William A.

    2012-01-01

    The HARA radiation code is fully-coupled to the FUN3D unstructured-grid CFD code for the purpose of simulating high-energy hypersonic flows. The radiation energy source terms and surface heat transfer, under the tangent slab approximation, are included within the fluid dynamic ow solver. The Fire II flight test, at the Mach-31 1643-second trajectory point, is used as a demonstration case. Comparisons are made with an existing structured-grid capability, the LAURA/HARA coupling. The radiative surface heat transfer rates from the present approach match the benchmark values within 6%. Although radiation coupling is the focus of the present work, convective surface heat transfer rates are also reported, and are seen to vary depending upon the choice of mesh connectivity and FUN3D ux reconstruction algorithm. On a tetrahedral-element mesh the convective heating matches the benchmark at the stagnation point, but under-predicts by 15% on the Fire II shoulder. Conversely, on a mixed-element mesh the convective heating over-predicts at the stagnation point by 20%, but matches the benchmark away from the stagnation region.

  15. Computer-generated hologram for 3D scene from multi-view images

    NASA Astrophysics Data System (ADS)

    Chang, Eun-Young; Kang, Yun-Suk; Moon, KyungAe; Ho, Yo-Sung; Kim, Jinwoong

    2013-05-01

    Recently, the computer generated hologram (CGH) calculated from real existing objects is more actively investigated to support holographic video and TV applications. In this paper, we propose a method of generating a hologram of the natural 3-D scene from multi-view images in order to provide motion parallax viewing with a suitable navigation range. After a unified 3-D point source set describing the captured 3-D scene is obtained from multi-view images, a hologram pattern supporting motion-parallax is calculated from the set using a point-based CGH method. We confirmed that 3-D scenes are faithfully reconstructed using numerical reconstruction.

  16. Surface 3D nanostructuring by tightly focused laser pulse: simulations by Lagrangian code and molecular dynamics

    NASA Astrophysics Data System (ADS)

    Inogamov, Nail A.; Zhakhovsky, Vasily V.

    2016-02-01

    There are many important applications in which the ultrashort diffraction-limited and therefore tightly focused laser pulses irradiates metal films mounted on dielectric substrate. Here we present the detailed picture of laser peeling and 3D structure formation of the thin (relative to a depth of a heat affected zone in the bulk targets) gold films on glass substrate. The underlying physics of such diffraction-limited laser peeling was not well understood previously. Our approach is based on a physical model which takes into consideration the new calculations of the two-temperature (2T) equation of state (2T EoS) and the two-temperature transport coefficients together with the coupling parameter between electron and ion subsystems. The usage of the 2T EoS and the kinetic coefficients is required because absorption of an ultrashort pulse with duration of 10-1000 fs excites electron subsystem of metal and transfers substance into the 2T state with hot electrons (typical electron temperatures 1-3 eV) and much colder ions. It is shown that formation of submicrometer-sized 3D structures is a result of the electron-ion energy transfer, melting, and delamination of film from substrate under combined action of electron and ion pressures, capillary deceleration of the delaminated liquid metal or semiconductor, and ultrafast freezing of molten material. We found that the freezing is going in non-equilibrium regime with strongly overcooled liquid phase. In this case the Stefan approximation is non-applicable because the solidification front speed is limited by the diffusion rate of atoms in the molten material. To solve the problem we have developed the 2T Lagrangian code including all this reach physics in. We also used the high-performance combined Monte- Carlo and molecular dynamics code for simulation of surface 3D nanostructuring at later times after completion of electron-ion relaxation.

  17. 3-D TECATE/BREW: Thermal, stress, and birefringent ray-tracing codes for solid-state laser design

    SciTech Connect

    Gelinas, R.J.; Doss, S.K.; Nelson, R.G.

    1994-07-20

    This report describes the physics, code formulations, and numerics that are used in the TECATE (totally Eulerian code for anisotropic thermo-elasticity) and BREW (birefringent ray-tracing of electromagnetic waves) codes for laser design. These codes resolve thermal, stress, and birefringent optical effects in 3-D stationary solid-state systems. This suite of three constituent codes is a package referred to as LASRPAK.

  18. Full 3D visualization tool-kit for Monte Carlo and deterministic transport codes

    SciTech Connect

    Frambati, S.; Frignani, M.

    2012-07-01

    We propose a package of tools capable of translating the geometric inputs and outputs of many Monte Carlo and deterministic radiation transport codes into open source file formats. These tools are aimed at bridging the gap between trusted, widely-used radiation analysis codes and very powerful, more recent and commonly used visualization software, thus supporting the design process and helping with shielding optimization. Three main lines of development were followed: mesh-based analysis of Monte Carlo codes, mesh-based analysis of deterministic codes and Monte Carlo surface meshing. The developed kit is considered a powerful and cost-effective tool in the computer-aided design for radiation transport code users of the nuclear world, and in particular in the fields of core design and radiation analysis. (authors)

  19. The spine in 3D. Computed tomographic reformation from 2D axial sections.

    PubMed

    Virapongse, C; Gmitro, A; Sarwar, M

    1986-01-01

    A new program (3D83, General Electric) was used to reformat three-dimensional (3D) images from two-dimensional (2D) computed tomographic axial scans in 18 patients who had routine scans of the spine. The 3D spine images were extremely true to life and could be rotated around all three principle axes (constituting a movie), so that an illusion of head-motion parallax was created. The benefit of 3D reformation with this program is primarily for preoperative planning. It appears that 3D can also effectively determine the patency of foraminal stenosis by reformatting in hemisections. Currently this program is subject to several drawbacks that require user interaction and long reconstruction time. With further improvement, 3D reformation will find increasing clinical applicability. PMID:3787319

  20. Development and preliminary verification of the 3D core neutronic code: COCO

    SciTech Connect

    Lu, H.; Mo, K.; Li, W.; Bai, N.; Li, J.

    2012-07-01

    As the recent blooming economic growth and following environmental concerns (China)) is proactively pushing forward nuclear power development and encouraging the tapping of clean energy. Under this situation, CGNPC, as one of the largest energy enterprises in China, is planning to develop its own nuclear related technology in order to support more and more nuclear plants either under construction or being operation. This paper introduces the recent progress in software development for CGNPC. The focus is placed on the physical models and preliminary verification results during the recent development of the 3D Core Neutronic Code: COCO. In the COCO code, the non-linear Green's function method is employed to calculate the neutron flux. In order to use the discontinuity factor, the Neumann (second kind) boundary condition is utilized in the Green's function nodal method. Additionally, the COCO code also includes the necessary physical models, e.g. single-channel thermal-hydraulic module, burnup module, pin power reconstruction module and cross-section interpolation module. The preliminary verification result shows that the COCO code is sufficient for reactor core design and analysis for pressurized water reactor (PWR). (authors)

  1. A Coupled Neutron-Photon 3-D Combinatorial Geometry Monte Carlo Transport Code

    1998-06-12

    TART97 is a coupled neutron-photon, 3 dimensional, combinatorial geometry, time dependent Monte Carlo transport code. This code can run on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART97 is also incredibly fast: if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system canmore » save you a great deal of time and energy. TART 97 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART97 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART97 and ist data files.« less

  2. DYNA3D: A nonlinear, explicit, three-dimensional finite element code for solid and structural mechanics, User manual. Revision 1

    SciTech Connect

    Whirley, R.G.; Engelmann, B.E.

    1993-11-01

    This report is the User Manual for the 1993 version of DYNA3D, and also serves as a User Guide. DYNA3D is a nonlinear, explicit, finite element code for analyzing the transient dynamic response of three-dimensional solids and structures. The code is fully vectorized and is available on several computer platforms. DYNA3D includes solid, shell, beam, and truss elements to allow maximum flexibility in modeling physical problems. Many material models are available to represent a wide range of material behavior, including elasticity, plasticity, composites, thermal effects, and rate dependence. In addition, DYNA3D has a sophisticated contact interface capability, including frictional sliding and single surface contact. Rigid materials provide added modeling flexibility. A material model driver with interactive graphics display is incorporated into DYNA3D to permit accurate modeling of complex material response based on experimental data. Along with the DYNA3D Example Problem Manual, this document provides the information necessary to apply DYNA3D to solve a wide range of engineering analysis problems.

  3. Using self-similarity compensation for improving inter-layer prediction in scalable 3D holoscopic video coding

    NASA Astrophysics Data System (ADS)

    Conti, Caroline; Nunes, Paulo; Ducla Soares, Luís.

    2013-09-01

    Holoscopic imaging, also known as integral imaging, has been recently attracting the attention of the research community, as a promising glassless 3D technology due to its ability to create a more realistic depth illusion than the current stereoscopic or multiview solutions. However, in order to gradually introduce this technology into the consumer market and to efficiently deliver 3D holoscopic content to end-users, backward compatibility with legacy displays is essential. Consequently, to enable 3D holoscopic content to be delivered and presented on legacy displays, a display scalable 3D holoscopic coding approach is required. Hence, this paper presents a display scalable architecture for 3D holoscopic video coding with a three-layer approach, where each layer represents a different level of display scalability: Layer 0 - a single 2D view; Layer 1 - 3D stereo or multiview; and Layer 2 - the full 3D holoscopic content. In this context, a prediction method is proposed, which combines inter-layer prediction, aiming to exploit the existing redundancy between the multiview and the 3D holoscopic layers, with self-similarity compensated prediction (previously proposed by the authors for non-scalable 3D holoscopic video coding), aiming to exploit the spatial redundancy inherent to the 3D holoscopic enhancement layer. Experimental results show that the proposed combined prediction can improve significantly the rate-distortion performance of scalable 3D holoscopic video coding with respect to the authors' previously proposed solutions, where only inter-layer or only self-similarity prediction is used.

  4. Simulation of a Synthetic Jet in Quiescent Air Using TLNS3D Flow Code

    NASA Technical Reports Server (NTRS)

    Vatsa, Veer N.; Turkel, Eli

    2007-01-01

    Although the actuator geometry is highly three-dimensional, the outer flowfield is nominally two-dimensional because of the high aspect ratio of the rectangular slot. For the present study, this configuration is modeled as a two-dimensional problem. A multi-block structured grid available at the CFDVAL2004 website is used as a baseline grid. The periodic motion of the diaphragm is simulated by specifying a sinusoidal velocity at the diaphragm surface with a frequency of 450 Hz, corresponding to the experimental setup. The amplitude is chosen so that the maximum Mach number at the jet exit is approximately 0.1, to replicate the experimental conditions. At the solid walls zero slip, zero injection, adiabatic temperature and zero pressure gradient conditions are imposed. In the external region, symmetry conditions are imposed on the side (vertical) boundaries and far-field conditions are imposed on the top boundary. A nominal free-stream Mach number of 0.001 is imposed in the free stream to simulate incompressible flow conditions in the TLNS3D code, which solves compressible flow equations. The code was run in unsteady (URANS) mode until the periodicity was established. The time-mean quantities were obtained by running the code for at least another 15 periods and averaging the flow quantities over these periods. The phase-locked average of flow quantities were assumed to be coincident with their values during the last full time period.

  5. Code verification for unsteady 3-D fluid-solid interaction problems

    NASA Astrophysics Data System (ADS)

    Yu, Kintak Raymond; Étienne, Stéphane; Hay, Alexander; Pelletier, Dominique

    2015-12-01

    This paper describes a procedure to synthesize Manufactured Solutions for Code Verification of an important class of Fluid-Structure Interaction (FSI) problems whose behaviors can be modeled as rigid body vibrations in incompressible fluids. We refer this class of FSI problems as Fluid-Solid Interaction problems, which can be found in many practical engineering applications. The methodology can be utilized to develop Manufactured Solutions for both 2-D and 3-D cases. We demonstrate the procedure with our numerical code. We present details of the formulation and methodology. We also provide the reasonings behind our proposed approach. Results from grid and time step refinement studies confirm the verification of our solver and demonstrate the versatility of the simple synthesis procedure. In addition, the results also demonstrate that the modified decoupled approach to verify flow problems with high-order time-stepping schemes can be employed equally well to verify code for multi-physics problems (here, those of the Fluid-Solid Interaction) when the numerical discretization is based on the Method of Lines.

  6. A 3D Parallel Beam Dynamics Code for Modeling High Brightness Beams in Photoinjectors

    SciTech Connect

    Qiang, Ji; Lidia, S.; Ryne, R.D.; Limborg, C.; /SLAC

    2006-02-13

    In this paper we report on IMPACT-T, a 3D beam dynamics code for modeling high brightness beams in photoinjectors and rf linacs. IMPACT-T is one of the few codes used in the photoinjector community that has a parallel implementation, making it very useful for high statistics simulations of beam halos and beam diagnostics. It has a comprehensive set of beamline elements, and furthermore allows arbitrary overlap of their fields. It is unique in its use of space-charge solvers based on an integrated Green function to efficiently and accurately treat beams with large aspect ratio, and a shifted Green function to efficiently treat image charge effects of a cathode. It is also unique in its inclusion of energy binning in the space-charge calculation to model beams with large energy spread. Together, all these features make IMPACT-T a powerful and versatile tool for modeling beams in photoinjectors and other systems. In this paper we describe the code features and present results of IMPACT-T simulations of the LCLS photoinjectors. We also include a comparison of IMPACT-T and PARMELA results.

  7. A 3d Parallel Beam Dynamics Code for Modeling High BrightnessBeams in Photoinjectors

    SciTech Connect

    Qiang, J.; Lidia, S.; Ryne, R.; Limborg, C.

    2005-05-16

    In this paper we report on IMPACT-T, a 3D beam dynamics code for modeling high brightness beams in photoinjectors and rf linacs. IMPACT-T is one of the few codes used in the photoinjector community that has a parallel implementation, making it very useful for high statistics simulations of beam halos and beam diagnostics. It has a comprehensive set of beamline elements, and furthermore allows arbitrary overlap of their fields. It is unique in its use of space-charge solvers based on an integrated Green function to efficiently and accurately treat beams with large aspect ratio, and a shifted Green function to efficiently treat image charge effects of a cathode. It is also unique in its inclusion of energy binning in the space-charge calculation to model beams with large energy spread. Together, all these features make IMPACT-T a powerful and versatile tool for modeling beams in photoinjectors and other systems. In this paper we describe the code features and present results of IMPACT-T simulations of the LCLS photoinjectors. We also include a comparison of IMPACT-T and PARMELA results.

  8. Coded aperture computed tomography

    NASA Astrophysics Data System (ADS)

    Choi, Kerkil; Brady, David J.

    2009-08-01

    Diverse physical measurements can be modeled by X-ray transforms. While X-ray tomography is the canonical example, reference structure tomography (RST) and coded aperture snapshot spectral imaging (CASSI) are examples of physically unrelated but mathematically equivalent sensor systems. Historically, most x-ray transform based systems sample continuous distributions and apply analytical inversion processes. On the other hand, RST and CASSI generate discrete multiplexed measurements implemented with coded apertures. This multiplexing of coded measurements allows for compression of measurements from a compressed sensing perspective. Compressed sensing (CS) is a revelation that if the object has a sparse representation in some basis, then a certain number, but typically much less than what is prescribed by Shannon's sampling rate, of random projections captures enough information for a highly accurate reconstruction of the object. This paper investigates the role of coded apertures in x-ray transform measurement systems (XTMs) in terms of data efficiency and reconstruction fidelity from a CS perspective. To conduct this, we construct a unified analysis using RST and CASSI measurement models. Also, we propose a novel compressive x-ray tomography measurement scheme which also exploits coding and multiplexing, and hence shares the analysis of the other two XTMs. Using this analysis, we perform a qualitative study on how coded apertures can be exploited to implement physical random projections by "regularizing" the measurement systems. Numerical studies and simulation results demonstrate several examples of the impact of coding.

  9. PORTA: A Massively Parallel Code for 3D Non-LTE Polarized Radiative Transfer

    NASA Astrophysics Data System (ADS)

    Štěpán, J.

    2014-10-01

    The interpretation of the Stokes profiles of the solar (stellar) spectral line radiation requires solving a non-LTE radiative transfer problem that can be very complex, especially when the main interest lies in modeling the linear polarization signals produced by scattering processes and their modification by the Hanle effect. One of the main difficulties is due to the fact that the plasma of a stellar atmosphere can be highly inhomogeneous and dynamic, which implies the need to solve the non-equilibrium problem of generation and transfer of polarized radiation in realistic three-dimensional stellar atmospheric models. Here we present PORTA, a computer program we have developed for solving, in three-dimensional (3D) models of stellar atmospheres, the problem of the generation and transfer of spectral line polarization taking into account anisotropic radiation pumping and the Hanle and Zeeman effects in multilevel atoms. The numerical method of solution is based on a highly convergent iterative algorithm, whose convergence rate is insensitive to the grid size, and on an accurate short-characteristics formal solver of the Stokes-vector transfer equation which uses monotonic Bezier interpolation. In addition to the iterative method and the 3D formal solver, another important feature of PORTA is a novel parallelization strategy suitable for taking advantage of massively parallel computers. Linear scaling of the solution with the number of processors allows to reduce the solution time by several orders of magnitude. We present useful benchmarks and a few illustrations of applications using a 3D model of the solar chromosphere resulting from MHD simulations. Finally, we present our conclusions with a view to future research. For more details see Štěpán & Trujillo Bueno (2013).

  10. Liner Optimization Studies Using the Ducted Fan Noise Prediction Code TBIEM3D

    NASA Technical Reports Server (NTRS)

    Dunn, M. H.; Farassat, F.

    1998-01-01

    In this paper we demonstrate the usefulness of the ducted fan noise prediction code TBIEM3D as a liner optimization design tool. Boundary conditions on the interior duct wall allow for hard walls or a locally reacting liner with axially segmented, circumferentially uniform impedance. Two liner optimization studies are considered in which farfield noise attenuation due to the presence of a liner is maximized by adjusting the liner impedance. In the first example, the dependence of optimal liner impedance on frequency and liner length is examined. Results show that both the optimal impedance and attenuation levels are significantly influenced by liner length and frequency. In the second example, TBIEM3D is used to compare radiated sound pressure levels between optimal and non-optimal liner cases at conditions designed to simulate take-off. It is shown that significant noise reduction is achieved for most of the sound field by selecting the optimal or near optimal liner impedance. Our results also indicate that there is relatively large region of the impedance plane over which optimal or near optimal liner behavior is attainable. This is an important conclusion for the designer since there are variations in liner characteristics due to manufacturing imprecisions.

  11. Electro-holography display using computer generated hologram of 3D objects based on projection spectra

    NASA Astrophysics Data System (ADS)

    Huang, Sujuan; Wang, Duocheng; He, Chao

    2012-11-01

    A new method of synthesizing computer-generated hologram of three-dimensional (3D) objects is proposed from their projection images. A series of projection images of 3D objects are recorded with one-dimensional azimuth scanning. According to the principles of paraboloid of revolution in 3D Fourier space and 3D central slice theorem, spectra information of 3D objects can be gathered from their projection images. Considering quantization error of horizontal and vertical directions, the spectrum information from each projection image is efficiently extracted in double circle and four circles shape, to enhance the utilization of projection spectra. Then spectra information of 3D objects from all projection images is encoded into computer-generated hologram based on Fourier transform using conjugate-symmetric extension. The hologram includes 3D information of objects. Experimental results for numerical reconstruction of the CGH at different distance validate the proposed methods and show its good performance. Electro-holographic reconstruction can be realized by using an electronic addressing reflective liquid-crystal display (LCD) spatial light modulator. The CGH from the computer is loaded onto the LCD. By illuminating a reference light from a laser source to the LCD, the amplitude and phase information included in the CGH will be reconstructed due to the diffraction of the light modulated by the LCD.

  12. GATOR: A 3-D time-dependent simulation code for helix TWTs

    SciTech Connect

    Zaidman, E.G.; Freund, H.P.

    1996-12-31

    A 3D nonlinear analysis of helix TWTs is presented. The analysis and simulation code is based upon a spectral decomposition using the vacuum sheath helix modes. The field equations are integrated on a grid and advanced in time using a MacCormack predictor-corrector scheme, and the electron orbit equations are integrated using a fourth order Runge-Kutta algorithm. Charge is accumulated on the grid and the field is interpolated to the particle location by a linear map. The effect of dielectric liners on the vacuum sheath helix dispersion is included in the analysis. Several numerical cases are considered. Simulation of the injection of a DC beam and a signal at a single frequency is compared with a linear field theory of the helix TWT interaction, and good agreement is found.

  13. Gray coded trapezoidal fringes for 3-D surface-shape measurement

    NASA Astrophysics Data System (ADS)

    Pérez, Oscar G.; Flores, Jorge L.; García-Torales, G.; Muñoz-G, J. A.; Soto, Horacio; Balderas, Sandra E.

    2014-09-01

    We propose a two-step trapezoidal-pattern phase-shifting method for 3-D surface-shape measurements. Shape measurements by trapezoidal phase-shifting methods require high-quality trapezoidal patterns. Furthermore, most of the video projectors are nonlinear, making it difficult to generate high quality phase without nonlinearity calibration and correction. To overcome the limitations, we propose a method for synthesizing trapezoidal intensity fringes as a way to solve the problems caused by projector/camera gamma nonlinearity. The fringe generation technique consists of projecting and acquiring a temporal sequence of strictly binary color patterns (Gray code), whose (adequately weighted) average leads to trapezoidal fringe patterns with the required number of bits, which allows a reliable three-dimensional profile reconstruction using phase-shifting methods. Validation experiments are presented.

  14. LLNL-Earth3D

    2013-10-01

    Earth3D is a computer code designed to allow fast calculation of seismic rays and travel times through a 3D model of the Earth. LLNL is using this for earthquake location and global tomography efforts and such codes are of great interest to the Earth Science community.

  15. An improved version of NCOREL: A computer program for 3-D nonlinear supersonic potential flow computations

    NASA Technical Reports Server (NTRS)

    Siclari, Michael J.

    1988-01-01

    A computer code called NCOREL (for Nonconical Relaxation) has been developed to solve for supersonic full potential flows over complex geometries. The method first solves for the conical at the apex and then marches downstream in a spherical coordinate system. Implicit relaxation techniques are used to numerically solve the full potential equation at each subsequent crossflow plane. Many improvements have been made to the original code including more reliable numerics for computing wing-body flows with multiple embedded shocks, inlet flow through simulation, wake model and entropy corrections. Line relaxation or approximate factorization schemes are optionally available. Improved internal grid generation using analytic conformal mappings, supported by a simple geometric Harris wave drag input that was originally developed for panel methods and internal geometry package are some of the new features.

  16. Time- and Computation-Efficient Calibration of MEMS 3D Accelerometers and Gyroscopes

    PubMed Central

    Stančin, Sara; Tomažič, Sašo

    2014-01-01

    We propose calibration methods for microelectromechanical system (MEMS) 3D accelerometers and gyroscopes that are efficient in terms of time and computational complexity. The calibration process for both sensors is simple, does not require additional expensive equipment, and can be performed in the field before or between motion measurements. The methods rely on a small number of defined calibration measurements that are used to obtain the values of 12 calibration parameters. This process enables the static compensation of sensor inaccuracies. The values detected by the 3D sensor are interpreted using a generalized 3D sensor model. The model assumes that the values detected by the sensor are equal to the projections of the measured value on the sensor sensitivity axes. Although this finding is trivial for 3D accelerometers, its validity for 3D gyroscopes is not immediately apparent; thus, this paper elaborates on this latter topic. For an example sensor device, calibration parameters were established using calibration measurements of approximately 1.5 min in duration for the 3D accelerometer and 2.5 min in duration for the 3D gyroscope. Correction of each detected 3D value using the established calibration parameters in further measurements requires only nine addition and nine multiplication operations. PMID:25123469

  17. Comparison of Computational Aeroacoustics Prediction of Acoustic Transmission Through a 3D Stator With Experiment

    NASA Technical Reports Server (NTRS)

    Hixon, Ray; Envia, Edmane; Dahl, Milo; Sutliff, Daniel L.

    2014-01-01

    In this paper, numerical predictions of acoustic transmission through a 3D stator obtained using the NASA BASS code are compared with experimentally measured data. The influence of vane count and stagger as well as frequency and mode order on the transmission loss is investigated. The data-theory comparisons indicate that BASS can predict all the important trends observed in the experimental data.

  18. Comparison of Computational Aeroacoustics Prediction of Acoustic Transmission Through a 3D Stator with Experiment

    NASA Technical Reports Server (NTRS)

    Hixon, Ray; Envia, Edmane; Dahl, Milo; Sutliff, Daniel

    2014-01-01

    In this paper, numerical predictions of acoustic transmission through a 3D stator obtained using the NASA BASS code are compared with experimentally measured data. The influence of vane count and stagger as well as frequency and mode order on the transmission loss is investigated. The data-theory comparisons indicate that BASS can predict all the important trends observed in the experimental data.

  19. Grid-Adapted FUN3D Computations for the Second High Lift Prediction Workshop

    NASA Technical Reports Server (NTRS)

    Lee-Rausch, E. M.; Rumsey, C. L.; Park, M. A.

    2014-01-01

    Contributions of the unstructured Reynolds-averaged Navier-Stokes code FUN3D to the 2nd AIAA CFD High Lift Prediction Workshop are described, and detailed comparisons are made with experimental data. Using workshop-supplied grids, results for the clean wing configuration are compared with results from the structured code CFL3D Using the same turbulence model, both codes compare reasonably well in terms of total forces and moments, and the maximum lift is similarly over-predicted for both codes compared to experiment. By including more representative geometry features such as slat and flap brackets and slat pressure tube bundles, FUN3D captures the general effects of the Reynolds number variation, but under-predicts maximum lift on workshop-supplied grids in comparison with the experimental data, due to excessive separation. However, when output-based, off-body grid adaptation in FUN3D is employed, results improve considerably. In particular, when the geometry includes both brackets and the pressure tube bundles, grid adaptation results in a more accurate prediction of lift near stall in comparison with the wind-tunnel data. Furthermore, a rotation-corrected turbulence model shows improved pressure predictions on the outboard span when using adapted grids.

  20. Coupled Neutron-Photon, 3-D, Combinatorial Geometry, Time Dependent, Monte Carlo Transport Code System.

    2013-06-24

    Version 07 TART2012 is a coupled neutron-photon Monte Carlo transport code designed to use three-dimensional (3-D) combinatorial geometry. Neutron and/or photon sources as well as neutron induced photon production can be tracked. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART2012 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared tomore » other similar codes. Use of the entire system can save you a great deal of time and energy. TART2012 extends the general utility of the code to even more areas of application than available in previous releases by concentrating on improving the physics, particularly with regard to improved treatment of neutron fission, resonance self-shielding, molecular binding, and extending input options used by the code. Several utilities are included for creating input files and displaying TART results and data. TART2012 uses the latest ENDF/B-VI, Release 8, data. New for TART2012 is the use of continuous energy neutron cross sections, in addition to its traditional multigroup cross sections. For neutron interaction, the data are derived using ENDF-ENDL2005 and include both continuous energy cross sections and 700 group neutron data derived using a combination of ENDF/B-VI, Release 8, and ENDL data. The 700 group structure extends from 10-5 eV up to 1 GeV. Presently nuclear data are only available up to 20 MeV, so that only 616 of the groups are currently used. For photon interaction, 701 point photon data were derived using the Livermore EPDL97 file. The new 701 point structure extends from 100 eV up to 1 GeV, and is currently used over this entire energy range. TART2012 completely supersedes all older versions of TART, and it is strongly recommended that one use only the most recent version of TART2012 and its data files. Check author’s homepage for related information: http

  1. TFaNS Tone Fan Noise Design/Prediction System. Volume 1; System Description, CUP3D Technical Documentation and Manual for Code Developers

    NASA Technical Reports Server (NTRS)

    Topol, David A.

    1999-01-01

    TFaNS is the Tone Fan Noise Design/Prediction System developed by Pratt & Whitney under contract to NASA Lewis (presently NASA Glenn). The purpose of this system is to predict tone noise emanating from a fan stage including the effects of reflection and transmission by the rotor and stator and by the duct inlet and nozzle. These effects have been added to an existing annular duct/isolated stator noise prediction capability. TFaNS consists of: The codes that compute the acoustic properties (reflection and transmission coefficients) of the various elements and write them to files. Cup3D: Fan Noise Coupling Code that reads these files, solves the coupling problem, and outputs the desired noise predictions. AWAKEN: CFD/Measured Wake Postprocessor which reformats CFD wake predictions and/or measured wake data so it can be used by the system. This volume of the report provides technical background for TFaNS including the organization of the system and CUP3D technical documentation. This document also provides information for code developers who must write Acoustic Property Files in the CUP3D format. This report is divided into three volumes: Volume I: System Description, CUP3D Technical Documentation, and Manual for Code Developers; Volume II: User's Manual, TFaNS Vers. 1.4; Volume III: Evaluation of System Codes.

  2. Computing 3-D structure of rigid objects using stereo and motion

    NASA Technical Reports Server (NTRS)

    Nguyen, Thinh V.

    1987-01-01

    Work performed as a step toward an intelligent automatic machine vision system for 3-D imaging is discussed. The problem considered is the quantitative 3-D reconstruction of rigid objects. Motion and stereo are the two clues considered in this system. The system basically consists of three processes: the low level process to extract image features, the middle level process to establish the correspondence in the stereo (spatial) and motion (temporal) modalities, and the high level process to compute the 3-D coordinates of the corner points by integrating the spatial and temporal correspondences.

  3. Validation of Heat Transfer and Film Cooling Capabilities of the 3-D RANS Code TURBO

    NASA Technical Reports Server (NTRS)

    Shyam, Vikram; Ameri, Ali; Chen, Jen-Ping

    2010-01-01

    The capabilities of the 3-D unsteady RANS code TURBO have been extended to include heat transfer and film cooling applications. The results of simulations performed with the modified code are compared to experiment and to theory, where applicable. Wilcox s k-turbulence model has been implemented to close the RANS equations. Two simulations are conducted: (1) flow over a flat plate and (2) flow over an adiabatic flat plate cooled by one hole inclined at 35 to the free stream. For (1) agreement with theory is found to be excellent for heat transfer, represented by local Nusselt number, and quite good for momentum, as represented by the local skin friction coefficient. This report compares the local skin friction coefficients and Nusselt numbers on a flat plate obtained using Wilcox's k-model with the theory of Blasius. The study looks at laminar and turbulent flows over an adiabatic flat plate and over an isothermal flat plate for two different wall temperatures. It is shown that TURBO is able to accurately predict heat transfer on a flat plate. For (2) TURBO shows good qualitative agreement with film cooling experiments performed on a flat plate with one cooling hole. Quantitatively, film effectiveness is under predicted downstream of the hole.

  4. Quantum self-correction in the 3D cubic code model.

    PubMed

    Bravyi, Sergey; Haah, Jeongwan

    2013-11-15

    A big open question in the quantum information theory concerns the feasibility of a self-correcting quantum memory. A quantum state recorded in such memory can be stored reliably for a macroscopic time without need for active error correction, if the memory is in contact with a cold enough thermal bath. Here we report analytic and numerical evidence for self-correcting behavior in the quantum spin lattice model known as the 3D cubic code. We prove that its memory time is at least L(cβ), where L is the lattice size, β is the inverse temperature of the bath, and c>0 is a constant coefficient. However, this bound applies only if the lattice size L does not exceed a critical value which grows exponentially with β. In that sense, the model can be called a partially self-correcting memory. We also report a Monte Carlo simulation indicating that our analytic bounds on the memory time are tight up to constant coefficients. To model the readout step we introduce a new decoding algorithm, which can be implemented efficiently for any topological stabilizer code. A longer version of this work can be found in Bravyi and Haah, arXiv:1112.3252. PMID:24289671

  5. Quantum Self-Correction in the 3D Cubic Code Model

    NASA Astrophysics Data System (ADS)

    Bravyi, Sergey; Haah, Jeongwan

    2013-11-01

    A big open question in the quantum information theory concerns the feasibility of a self-correcting quantum memory. A quantum state recorded in such memory can be stored reliably for a macroscopic time without need for active error correction, if the memory is in contact with a cold enough thermal bath. Here we report analytic and numerical evidence for self-correcting behavior in the quantum spin lattice model known as the 3D cubic code. We prove that its memory time is at least Lcβ, where L is the lattice size, β is the inverse temperature of the bath, and c>0 is a constant coefficient. However, this bound applies only if the lattice size L does not exceed a critical value which grows exponentially with β. In that sense, the model can be called a partially self-correcting memory. We also report a Monte Carlo simulation indicating that our analytic bounds on the memory time are tight up to constant coefficients. To model the readout step we introduce a new decoding algorithm, which can be implemented efficiently for any topological stabilizer code. A longer version of this work can be found in Bravyi and Haah, arXiv:1112.3252.

  6. Studies of coupled cavity LINAC (CCL) accelerating structures with 3-D codes

    SciTech Connect

    Spalek, G.

    2000-08-01

    The cw CCL being designed for the Accelerator Production of Tritium (APT) project accelerates protons from 96 MeV to 211 MeV. It consists of 99 segments each containing up to seven accelerating cavities. Segments are coupled by intersegment coupling cavities and grouped into supermodules. The design method needs to address not only basic cavity sizing for a given coupling and pi/2 mode frequency, but also the effects of high power densities on the cavity frequency, mechanical stresses, and the structure's stop band during operation. On the APT project, 3-D RF (Ansoft Corp.'s HFSS) and coupled RF/structural (Ansys Inc.'s ANSYS) codes are being used. to develop tools to address the above issues and guide cooling channel design. The code's predictions are being checked against available low power Aluminum models. Stop band behavior under power will be checked once the tools are extended to CCDTL structures that have been tested at high power. A summary of calculations made to date and agreement with measured results will be presented.

  7. ORPHEE research reactor: 3D core depletion calculation using Monte-Carlo code TRIPOLI-4®

    NASA Astrophysics Data System (ADS)

    Damian, F.; Brun, E.

    2014-06-01

    ORPHEE is a research reactor located at CEA Saclay. It aims at producing neutron beams for experiments. This is a pool-type reactor (heavy water), and the core is cooled by light water. Its thermal power is 14 MW. ORPHEE core is 90 cm height and has a cross section of 27x27 cm2. It is loaded with eight fuel assemblies characterized by a various number of fuel plates. The fuel plate is composed of aluminium and High Enriched Uranium (HEU). It is a once through core with a fuel cycle length of approximately 100 Equivalent Full Power Days (EFPD) and with a maximum burnup of 40%. Various analyses under progress at CEA concern the determination of the core neutronic parameters during irradiation. Taking into consideration the geometrical complexity of the core and the quasi absence of thermal feedback for nominal operation, the 3D core depletion calculations are performed using the Monte-Carlo code TRIPOLI-4® [1,2,3]. A preliminary validation of the depletion calculation was performed on a 2D core configuration by comparison with the deterministic transport code APOLLO2 [4]. The analysis showed the reliability of TRIPOLI-4® to calculate a complex core configuration using a large number of depleting regions with a high level of confidence.

  8. Computational efficient segmentation of cell nuclei in 2D and 3D fluorescent micrographs

    NASA Astrophysics Data System (ADS)

    De Vylder, Jonas; Philips, Wilfried

    2011-02-01

    This paper proposes a new segmentation technique developed for the segmentation of cell nuclei in both 2D and 3D fluorescent micrographs. The proposed method can deal with both blurred edges as with touching nuclei. Using a dual scan line algorithm its both memory as computational efficient, making it interesting for the analysis of images coming from high throughput systems or the analysis of 3D microscopic images. Experiments show good results, i.e. recall of over 0.98.

  9. Code System for 2-Group, 3D Neutronic Kinetics Calculations Coupled to Core Thermal Hydraulics.

    2000-05-12

    Version 00 QUARK is a combined computer program comprising a revised version of the QUANDRY three-dimensional, two-group neutron kinetics code and an upgraded version of the COBRA transient core analysis code (COBRA-EN). Starting from either a critical steady-state (k-effective or critical dilute Boron problem) or a subcritical steady-state (fixed source problem) in a PWR plant, the code allows one to simulate the neutronic and thermal-hydraulic core transient response to reactivity accidents initiated both inside themore » vessel (such as a control rod ejection) and outside the vessel (such as the sudden change of the Boron concentration in the coolant). QUARK output can be used as input to PSR-470/NORMA-FP to perform a subchannel analysis from converged coarse-mesh nodal solutions.« less

  10. 3D-SoftChip: A Novel Architecture for Next-Generation Adaptive Computing Systems

    NASA Astrophysics Data System (ADS)

    Kim, Chul; Rassau, Alex; Lachowicz, Stefan; Lee, Mike Myung-Ok; Eshraghian, Kamran

    2006-12-01

    This paper introduces a novel architecture for next-generation adaptive computing systems, which we term 3D-SoftChip. The 3D-SoftChip is a 3-dimensional (3D) vertically integrated adaptive computing system combining state-of-the-art processing and 3D interconnection technology. It comprises the vertical integration of two chips (a configurable array processor and an intelligent configurable switch) through an indium bump interconnection array (IBIA). The configurable array processor (CAP) is an array of heterogeneous processing elements (PEs), while the intelligent configurable switch (ICS) comprises a switch block, 32-bit dedicated RISC processor for control, on-chip program/data memory, data frame buffer, along with a direct memory access (DMA) controller. This paper introduces the novel 3D-SoftChip architecture for real-time communication and multimedia signal processing as a next-generation computing system. The paper further describes the advanced HW/SW codesign and verification methodology, including high-level system modeling of the 3D-SoftChip using SystemC, being used to determine the optimum hardware specification in the early design stage.

  11. A new 3D computational model for shaped charge jet breakup

    SciTech Connect

    Zernow, L.; Chapyak, E.J.; Mosso, S.J.

    1996-09-01

    This paper reviews prior 1D and 2D axisymmetric, analytical and computational studies, as well as empirical studies of the shaped charge jet particulation problem and discusses their associated insights and problems. It proposes a new 3D computational model of the particulation process, based upon a simplified version of the observed counter-rotating, double helical surface perturbations, found on softly recovered shaped charge jet particles, from both copper and tantalum jets. This 3D approach contrasts with the random, axisymmetric surface perturbations which have previously been used, to try to infer the observed length distribution of jet particles, on the basis of the most unstable wavelength concept, which leads to the expectation of a continuous distribution of particle lengths. The 3D model, by its very nature, leads to a non-random, periodic distribution of potential initial necking loci, on alternate sides of the stretching jet. This in turn infers a potentially periodic, overlapping, multi-modal distribution of associated jet particle lengths. Since it is unlikely that all potential initial necking sites will be activated simultaneously, the 3D model also suggests that longer jet particles containing partial, but unseparated necks, should be observed fairly often. The computational analysis is in its very early stages and the problems involved in inserting the two helical grooves and in defining the initial conditions and boundary conditions for the computation will be discussed. Available initial results from the 3D computation will be discussed and interpreted.

  12. 3D Polarized Radiative Transfer for Solar System Applications Using the public-domain HYPERION Code

    NASA Astrophysics Data System (ADS)

    Wolff, M. J.; Robitaille, T.; Whitney, B. A.

    2012-12-01

    We present a public-domain radiative transfer tool that will allow researchers to examine a wide-range of interesting solar system applications. Hyperion is a new three-dimensional continuum Monte-Carlo radiative transfer code that is designed to be as general as possible, allowing radiative transfer to be computed through a variety of three-dimensional grids (Robitaille, 2011, Astronomy & Astrophysics 536 A79). The main part of the code is problem-independent, and only requires the user to define the three-dimensional density structure, and the opacity and the illumination properties (as well as a few parameters that control execution and output of the code). Hyperion is written in Fortran 90 and parallelized using the MPI-2 standard. It is bundled with Python libraries that enable very flexible pre- and post-processing options (arbitrary shapes, multiple aerosol components, etc.). These routines are very amenable to user-extensibility. The package is currently distributed at www.hyperion-rt.org. Our presentation will feature 1) a brief overview of the code, including a description of the solar system-specific modifications that we have made beyond the capabilities in the original release; 2) Several solar system applications (i.e., Deep Impact Plume, Martian atmosphere, etc.); 3) discussion of availability and distribution of code components via www.hyperion-rt.org.

  13. 3D Slicer as an Image Computing Platform for the Quantitative Imaging Network

    PubMed Central

    Fedorov, Andriy; Beichel, Reinhard; Kalpathy-Cramer, Jayashree; Finet, Julien; Fillion-Robin, Jean-Christophe; Pujol, Sonia; Bauer, Christian; Jennings, Dominique; Fennessy, Fiona; Sonka, Milan; Buatti, John; Aylward, Stephen; Miller, James V.; Pieper, Steve; Kikinis, Ron

    2012-01-01

    Quantitative analysis has tremendous but mostly unrealized potential in healthcare to support objective and accurate interpretation of the clinical imaging. In 2008, the National Cancer Institute began building the Quantitative Imaging Network (QIN) initiative with the goal of advancing quantitative imaging in the context of personalized therapy and evaluation of treatment response. Computerized analysis is an important component contributing to reproducibility and efficiency of the quantitative imaging techniques. The success of quantitative imaging is contingent on robust analysis methods and software tools to bring these methods from bench to bedside. 3D Slicer is a free open source software application for medical image computing. As a clinical research tool, 3D Slicer is similar to a radiology workstation that supports versatile visualizations but also provides advanced functionality such as automated segmentation and registration for a variety of application domains. Unlike a typical radiology workstation, 3D Slicer is free and is not tied to specific hardware. As a programming platform, 3D Slicer facilitates translation and evaluation of the new quantitative methods by allowing the biomedical researcher to focus on the implementation of the algorithm, and providing abstractions for the common tasks of data communication, visualization and user interface development. Compared to other tools that provide aspects of this functionality, 3D Slicer is fully open source and can be readily extended and redistributed. In addition, 3D Slicer is designed to facilitate the development of new functionality in the form of 3D Slicer extensions. In this paper, we present an overview of 3D Slicer as a platform for prototyping, development and evaluation of image analysis tools for clinical research applications. To illustrate the utility of the platform in the scope of QIN, we discuss several use cases of 3D Slicer by the existing QIN teams, and we elaborate on the future

  14. 3D Slicer as an image computing platform for the Quantitative Imaging Network.

    PubMed

    Fedorov, Andriy; Beichel, Reinhard; Kalpathy-Cramer, Jayashree; Finet, Julien; Fillion-Robin, Jean-Christophe; Pujol, Sonia; Bauer, Christian; Jennings, Dominique; Fennessy, Fiona; Sonka, Milan; Buatti, John; Aylward, Stephen; Miller, James V; Pieper, Steve; Kikinis, Ron

    2012-11-01

    Quantitative analysis has tremendous but mostly unrealized potential in healthcare to support objective and accurate interpretation of the clinical imaging. In 2008, the National Cancer Institute began building the Quantitative Imaging Network (QIN) initiative with the goal of advancing quantitative imaging in the context of personalized therapy and evaluation of treatment response. Computerized analysis is an important component contributing to reproducibility and efficiency of the quantitative imaging techniques. The success of quantitative imaging is contingent on robust analysis methods and software tools to bring these methods from bench to bedside. 3D Slicer is a free open-source software application for medical image computing. As a clinical research tool, 3D Slicer is similar to a radiology workstation that supports versatile visualizations but also provides advanced functionality such as automated segmentation and registration for a variety of application domains. Unlike a typical radiology workstation, 3D Slicer is free and is not tied to specific hardware. As a programming platform, 3D Slicer facilitates translation and evaluation of the new quantitative methods by allowing the biomedical researcher to focus on the implementation of the algorithm and providing abstractions for the common tasks of data communication, visualization and user interface development. Compared to other tools that provide aspects of this functionality, 3D Slicer is fully open source and can be readily extended and redistributed. In addition, 3D Slicer is designed to facilitate the development of new functionality in the form of 3D Slicer extensions. In this paper, we present an overview of 3D Slicer as a platform for prototyping, development and evaluation of image analysis tools for clinical research applications. To illustrate the utility of the platform in the scope of QIN, we discuss several use cases of 3D Slicer by the existing QIN teams, and we elaborate on the future

  15. Computer algorithm for coding gain

    NASA Technical Reports Server (NTRS)

    Dodd, E. E.

    1974-01-01

    Development of a computer algorithm for coding gain for use in an automated communications link design system. Using an empirical formula which defines coding gain as used in space communications engineering, an algorithm is constructed on the basis of available performance data for nonsystematic convolutional encoding with soft-decision (eight-level) Viterbi decoding.

  16. Meta!Blast computer game: a pipeline from science to 3D art to education

    NASA Astrophysics Data System (ADS)

    Schneller, William; Campbell, P. J.; Bassham, Diane; Wurtele, Eve Syrkin

    2012-03-01

    Meta!Blast (http://www.metablast.org) is designed to address the challenges students often encounter in understanding cell and metabolic biology. Developed by faculty and students in biology, biochemistry, computer science, game design, pedagogy, art and story, Meta!Blast is being created using Maya (http://usa.autodesk.com/maya/) and the Unity 3D (http://unity3d.com/) game engine, for Macs and PCs in classrooms; it has also been exhibited in an immersive environment. Here, we describe the pipeline from protein structural data and holographic information to art to the threedimensional (3D) environment to the game engine, by which we provide a publicly-available interactive 3D cellular world that mimics a photosynthetic plant cell.

  17. Extension of a three-dimensional viscous wing flow analysis user's manual: VISTA 3-D code

    NASA Technical Reports Server (NTRS)

    Weinberg, Bernard C.; Chen, Shyi-Yaung; Thoren, Stephen J.; Shamroth, Stephen J.

    1990-01-01

    Three-dimensional unsteady viscous effects can significantly influence the performance of fixed and rotary wing aircraft. These effects are important in both flows about helicopter rotors in forward flight and flows about three-dimensional (swept and tapered) supercritical wings. A computational procedure for calculating such flow field was developed. The procedure is based upon an alternating direction technique employing the Linearized Block Implicit method for solving three-dimensional viscous flow problems. In order to demonstrate the viability of this method, two- and three-dimensional problems are computed. These include the flow over a two-dimensional NACA 0012 airfoil under steady and oscillating conditions, and the steady, skewed, three-dimensional flow on a flat plate. Although actual three-dimensional flows over wings were not obtained, the ground work was laid for considering such flows. In this report a description of the computer code is given.

  18. Calibration of Panoramic Cameras with Coded Targets and a 3d Calibration Field

    NASA Astrophysics Data System (ADS)

    Tommaselli, A. M. G.; Marcato, J., Jr.; Moraes, M. V. A.; Silva, S. L. A.; Artero, A. O.

    2014-03-01

    The aim of this paper is to present results achieved with a 3D terrestrial calibration field, designed for calibrating digital cameras and omnidirectional sensors. This terrestrial calibration field is composed of 139 ARUCO coded targets. Some experiments were performed using a Nikon D3100 digital camera with 8mm Samyang Bower fisheye lens. The camera was calibrated in this terrestrial test field using a conventional bundle adjustment with the Collinearity and mathematical models specially designed for fisheye lenses. The CMC software (Calibration with Multiple Cameras), developed in-house, was used for the calibration trials. This software was modified to use fisheye models to which the Conrady-Brown distortion equations were added. The target identification and image measurements of its four corners were performed automatically with a public software. Several experiments were performed with 16 images and the results were presented and compared. Besides the calibration of fish-eye cameras, the field was designed for calibration of a catadrioptic system and brief informations on the calibration of this unit will be provided in the paper.

  19. Depth-based representations: Which coding format for 3D video broadcast applications?

    NASA Astrophysics Data System (ADS)

    Kerbiriou, Paul; Boisson, Guillaume; Sidibé, Korian; Huynh-Thu, Quan

    2011-03-01

    3D Video (3DV) delivery standardization is currently ongoing in MPEG. Now time is to choose 3DV data representation format. What is at stake is the final quality for end-users, i.e. synthesized views' visual quality. We focus on two major rival depth-based formats, namely Multiview Video plus Depth (MVD) and Layered Depth Video (LDV). MVD can be considered as the basic depth-based 3DV format, generated by disparity estimation from multiview sequences. LDV is more sophisticated, with the compaction of multiview data into color- and depth-occlusions layers. We compare final views quality using MVD2 and LDV (both containing two color channels plus two depth components) coded with MVC at various compression ratios. Depending on the format, the appropriate synthesis process is performed to generate final stereoscopic pairs. Comparisons are provided in terms of SSIM and PSNR with respect to original views and to synthesized references (obtained without compression). Eventually, LDV outperforms significantly MVD when using state-of-the-art reference synthesis algorithms. Occlusions management before encoding is advantageous in comparison with handling redundant signals at decoder side. Besides, we observe that depth quantization does not induce much loss on the final view quality until a significant degradation level. Improvements in disparity estimation and view synthesis algorithms are therefore still expected during the remaining standardization steps.

  20. LINFLUX-AE: A Turbomachinery Aeroelastic Code Based on a 3-D Linearized Euler Solver

    NASA Technical Reports Server (NTRS)

    Reddy, T. S. R.; Bakhle, M. A.; Trudell, J. J.; Mehmed, O.; Stefko, G. L.

    2004-01-01

    This report describes the development and validation of LINFLUX-AE, a turbomachinery aeroelastic code based on the linearized unsteady 3-D Euler solver, LINFLUX. A helical fan with flat plate geometry is selected as the test case for numerical validation. The steady solution required by LINFLUX is obtained from the nonlinear Euler/Navier Stokes solver TURBO-AE. The report briefly describes the salient features of LINFLUX and the details of the aeroelastic extension. The aeroelastic formulation is based on a modal approach. An eigenvalue formulation is used for flutter analysis. The unsteady aerodynamic forces required for flutter are obtained by running LINFLUX for each mode, interblade phase angle and frequency of interest. The unsteady aerodynamic forces for forced response analysis are obtained from LINFLUX for the prescribed excitation, interblade phase angle, and frequency. The forced response amplitude is calculated from the modal summation of the generalized displacements. The unsteady pressures, work done per cycle, eigenvalues and forced response amplitudes obtained from LINFLUX are compared with those obtained from LINSUB, TURBO-AE, ASTROP2, and ANSYS.

  1. BWR ex-vessel steam explosion analysis with MC3D code

    SciTech Connect

    Leskovar, M.

    2012-07-01

    A steam explosion may occur, during a severe reactor accident, when the molten core comes into contact with the coolant water. A strong enough steam explosion in a nuclear power plant could jeopardize the containment integrity and so lead to a direct release of radioactive material to the environment. To resolve the open issues in steam explosion understanding and modeling, the OECD program SERENA phase 2 was launched at the end of year 2007, focusing on reactor applications. To verify the progress made in the understanding and modeling of fuel coolant interaction key phenomena for reactor applications a reactor exercise has been performed. In this paper the BWR ex-vessel steam explosion study, which was carried out with the MC3D code in conditions of the SERENA reactor exercise for the BWR case, is presented and discussed. The premixing simulations were performed with two different jet breakup modeling approaches and the explosion was triggered also at the expected most challenging time. For the most challenging case, at the cavity wall the highest calculated pressure was {approx}20 MPa and the highest pressure impulse was {approx}90 kPa.s. (authors)

  2. Computer generated holograms of 3D objects with reduced number of projections

    NASA Astrophysics Data System (ADS)

    Huang, Su-juan; Liu, Dao-jin; Zhao, Jing-jing

    2010-11-01

    A new method for synthesizing computer-generated holograms of 3D objects has been proposed with reduced number of projections. According to the principles of paraboloid of revolution in 3D Fourier space, spectra information of 3D objects is gathered from projection images. We record a series of real projection images of 3D objects under incoherent white-light illumination by circular scanning method, and synthesize interpolated projection images by motion estimation and compensation between adjacent real projection images, then extract the spectra information of the 3D objects from all projection images in circle form. Because of quantization error, information extraction in two circles form is better than in single circle. Finally hologram is encoded based on computer-generated holography using a conjugate-symmetric extension. Our method significantly reduces the number of required real projections without increasing much of the computing time of the hologram and degrading the reconstructed image. Numerical reconstruction of the hologram shows good results.

  3. Computational methods for constructing protein structure models from 3D electron microscopy maps

    PubMed Central

    Esquivel-Rodríguez, Juan; Kihara, Daisuke

    2013-01-01

    Protein structure determination by cryo-electron microscopy (EM) has made significant progress in the past decades. Resolutions of EM maps have been improving as evidenced by recently reported structures that are solved at high resolutions close to 3 Å. Computational methods play a key role in interpreting EM data. Among many computational procedures applied to an EM map to obtain protein structure information, in this article we focus on reviewing computational methods that model protein three-dimensional (3D) structures from a 3D EM density map that is constructed from two-dimensional (2D) maps. The computational methods we discuss range from de novo methods, which identify structural elements in an EM map, to structure fitting methods, where known high resolution structures are fit into a low-resolution EM map. A list of available computational tools is also provided. PMID:23796504

  4. Efficient curve-skeleton computation for the analysis of biomedical 3d images - biomed 2010.

    PubMed

    Brun, Francesco; Dreossi, Diego

    2010-01-01

    Advances in three dimensional (3D) biomedical imaging techniques, such as magnetic resonance (MR) and computed tomography (CT), make it easy to reconstruct high quality 3D models of portions of human body and other biological specimens. A major challenge lies in the quantitative analysis of the resulting models thus allowing a more comprehensive characterization of the object under investigation. An interesting approach is based on curve-skeleton (or medial axis) extraction, which gives basic information concerning the topology and the geometry. Curve-skeletons have been applied in the analysis of vascular networks and the diagnosis of tracheal stenoses as well as a 3D flight path in virtual endoscopy. However curve-skeleton computation is a crucial task. An effective skeletonization algorithm was introduced by N. Cornea in [1] but it lacks in computational performances. Thanks to the advances in imaging techniques the resolution of 3D images is increasing more and more, therefore there is the need for efficient algorithms in order to analyze significant Volumes of Interest (VOIs). In the present paper an improved skeletonization algorithm based on the idea proposed in [1] is presented. A computational comparison between the original and the proposed method is also reported. The obtained results show that the proposed method allows a significant computational improvement making more appealing the adoption of the skeleton representation in biomedical image analysis applications. PMID:20467122

  5. Computer-Assisted Hepatocellular Carcinoma Ablation Planning Based on 3-D Ultrasound Imaging.

    PubMed

    Li, Kai; Su, Zhongzhen; Xu, Erjiao; Guan, Peishan; Li, Liu-Jun; Zheng, Rongqin

    2016-08-01

    To evaluate computer-assisted hepatocellular carcinoma (HCC) ablation planning based on 3-D ultrasound, 3-D ultrasound images of 60 HCC lesions from 58 patients were obtained and transferred to a research toolkit. Compared with virtual manual ablation planning (MAP), virtual computer-assisted ablation planning (CAP) consumed less time and needle insertion numbers and exhibited a higher rate of complete tumor coverage and lower rate of critical structure injury. In MAP, junior operators used less time, but had more critical structure injury than senior operators. For large lesions, CAP performed better than MAP. For lesions near critical structures, CAP resulted in better outcomes than MAP. Compared with MAP, CAP based on 3-D ultrasound imaging was more effective and achieved a higher rate of complete tumor coverage and a lower rate of critical structure injury; it is especially useful for junior operators and with large lesions, and lesions near critical structures. PMID:27126243

  6. Models the Electromagnetic Response of a 3D Distribution using MP COMPUTERS

    1999-05-01

    EM3D models the electromagnetic response of a 3D distribution of conductivity, dielectric permittivity and magnetic permeability within the earth for geophysical applications using massively parallel computers. The simulations are carried out in the frequency domain for either electric or magnetic sources for either scattered or total filed formulations of Maxwell''s equations. The solution is based on the method of finite differences and includes absorbing boundary conditions so that responses can be modeled up into themore » radar range where wave propagation is dominant. Recent upgrades in the software include the incorporation of finite size sources, that in addition to dipolar source fields, and a low induction number preconditioner that can significantly reduce computational run times. A graphical user interface (GUI) is bundled with the software so that complicated 3D models can be easily constructed and simulated with the software. The GUI also allows for plotting of the output.« less

  7. 3-D Multiphase Segmentation of X-Ray Micro Computed Tomography Data of Geologic Materials

    NASA Astrophysics Data System (ADS)

    Tuller, M.; Kulkarni, R.; Fink, W.

    2011-12-01

    Advancements of noninvasive imaging methods such as X-Ray Computed Tomography (CT) led to a recent surge of applications in Geoscience. While substantial efforts and resources have been devoted to advance CT technology and micro-scale analysis, the development of a stable 3-D multiphase image segmentation method applicable to large datasets is lacking. To eliminate the need for wet/dry or dual energy scans, image alignment, and subtraction analysis, commonly applied in synchrotron X-Ray micro CT, a segmentation method based on a Bayesian Markov Random Field (MRF) framework amenable to true 3-D multiphase processing was developed and evaluated. Furthermore, several heuristic and deterministic combinatorial optimization schemes required to solve the labeling problem of the MRF image model were implemented and tested for computational efficiency and their impact on segmentation results. Test results for natural and artificial porous media datasets demonstrate great potential of the MRF image model for 3-D multiphase segmentation.

  8. A 3-D Poisson Solver Based on Conjugate Gradients Compared to Standard Iterative Methods and Its Performance on Vector Computers

    NASA Astrophysics Data System (ADS)

    Kapitza, H.; Eppel, D.

    1987-02-01

    A conjugate gradient method for solving a 3-D Poisson equation in Cartesian unequally spaced coordinates is tested in concurrence to standard iterative methods. It is found that the tested algorithm is far superior to Red-Black-SOR with optimal parameter. In the conjugate gradient method no relaxation parameter is needed, and there are no restrictions on the number of gridpoints in the three directions. The iteration routine is vectorizable to a large extent by the compiler of a CYBER 205 without any special preparations. Utilizing some special features of vector computers it is completely vectorizable with only minor changes in the code.

  9. Using 3D Computer Graphics Multimedia to Motivate Preservice Teachers' Learning of Geometry and Pedagogy

    ERIC Educational Resources Information Center

    Goodson-Espy, Tracy; Lynch-Davis, Kathleen; Schram, Pamela; Quickenton, Art

    2010-01-01

    This paper describes the genesis and purpose of our geometry methods course, focusing on a geometry-teaching technology we created using NVIDIA[R] Chameleon demonstration. This article presents examples from a sequence of lessons centered about a 3D computer graphics demonstration of the chameleon and its geometry. In addition, we present data…

  10. Analyzing 3D xylem networks in Vitis vinifera using High Resolution Computed Tomography (HRCT)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Recent developments in High Resolution Computed Tomography (HRCT) have made it possible to visualize three dimensional (3D) xylem networks without time consuming, labor intensive physical sectioning. Here we describe a new method to visualize complex vessel networks in plants and produce a quantitat...

  11. The Effects of 3D Computer Simulation on Biology Students' Achievement and Memory Retention

    ERIC Educational Resources Information Center

    Elangovan, Tavasuria; Ismail, Zurida

    2014-01-01

    A quasi experimental study was conducted for six weeks to determine the effectiveness of two different 3D computer simulation based teaching methods, that is, realistic simulation and non-realistic simulation on Form Four Biology students' achievement and memory retention in Perak, Malaysia. A sample of 136 Form Four Biology students in Perak,…

  12. 3D image fusion and guidance for computer-assisted bronchoscopy

    NASA Astrophysics Data System (ADS)

    Higgins, W. E.; Rai, L.; Merritt, S. A.; Lu, K.; Linger, N. T.; Yu, K. C.

    2005-11-01

    The standard procedure for diagnosing lung cancer involves two stages. First, the physician evaluates a high-resolution three-dimensional (3D) computed-tomography (CT) chest image to produce a procedure plan. Next, the physician performs bronchoscopy on the patient, which involves navigating the the bronchoscope through the airways to planned biopsy sites. Unfortunately, the physician has no link between the 3D CT image data and the live video stream provided during bronchoscopy. In addition, these data sources differ greatly in what they physically give, and no true 3D planning tools exist for planning and guiding procedures. This makes it difficult for the physician to translate a CT-based procedure plan to the video domain of the bronchoscope. Thus, the physician must essentially perform biopsy blindly, and the skill levels between different physicians differ greatly. We describe a system that enables direct 3D CT-based procedure planning and provides direct 3D guidance during bronchoscopy. 3D CT-based information on biopsy sites is provided interactively as the physician moves the bronchoscope. Moreover, graphical information through a live fusion of the 3D CT data and bronchoscopic video is provided during the procedure. This information is coupled with a series of computer-graphics tools to give the physician a greatly augmented reality of the patient's interior anatomy during a procedure. Through a series of controlled tests and studies with human lung-cancer patients, we have found that the system not only reduces the variation in skill level between different physicians, but also increases biopsy success rate.

  13. Enhancements, Parallelization and Future Directions of the V3FIT 3-D Equilibrium Reconstruction Code

    NASA Astrophysics Data System (ADS)

    Cianciosa, M. R.; Hanson, J. D.; Maurer, D. A.; Hartwell, G. J.; Archmiller, M. C.; Ma, X.; Herfindal, J.

    2014-10-01

    Three-dimensional equilibrium reconstruction is spreading beyond its original application to stellarators. Three-dimensional effects in nominally axisymmetric systems, including quasi-helical states in reversed field pinches and error fields in tokamaks, are becoming increasingly important. V3FIT is a fully three dimensional equilibrium reconstruction code in widespread use throughout the fusion community. The code has recently undergone extensive revision to prepare for the next generation of equilibrium reconstruction problems. The most notable changes are the abstraction of the equilibrium model, the propagation of experimental errors to the reconstructed results, support for multicolor soft x-ray emissivity cameras, and recent efforts to add parallelization for efficient computation on multi-processor system. Work presented will contain discussions on these new capabilities. We will compare probability distributions of reconstructed parameters with results from whole shot reconstructions. We will show benchmarking and profiling results of initial performance improvements through the addition of OpenMP and MPI support. We will discuss future directions of the V3FIT code including steps taken for support of the W-7X stellarator. Work supported by US. Department of Energy Grant No. DEFG-0203-ER-54692B.

  14. Unequal-period combination approach of gray code and phase-shifting for 3-D visual measurement

    NASA Astrophysics Data System (ADS)

    Yu, Shuang; Zhang, Jing; Yu, Xiaoyang; Sun, Xiaoming; Wu, Haibin

    2016-09-01

    Combination of Gray code and phase-shifting is the most practical and advanced approach for the structured light 3-D measurement so far, which is able to measure objects with complex and discontinuous surface. However, for the traditional combination of the Gray code and phase-shifting, the captured Gray code images are not always sharp cut-off in the black-white conversion boundaries, which may lead to wrong decoding analog code orders. Moreover, during the actual measurement, there also exists local decoding error for the wrapped analog code obtained with the phase-shifting approach. Therefore, for the traditional approach, the wrong analog code orders and the local decoding errors will consequently introduce the errors which are equivalent to a fringe period when the analog code is unwrapped. In order to avoid one-fringe period errors, we propose an approach which combines Gray code with phase-shifting according to unequal period. With theoretical analysis, we build the measurement model of the proposed approach, determine the applicable condition and optimize the Gray code encoding period and phase-shifting fringe period. The experimental results verify that the proposed approach can offer a reliable unwrapped analog code, which can be used in 3-D shape measurement.

  15. 3D parallel computations of turbofan noise propagation using a spectral element method

    NASA Astrophysics Data System (ADS)

    Taghaddosi, Farzad

    2006-12-01

    A three-dimensional code has been developed for the simulation of tone noise generated by turbofan engine inlets using computational aeroacoustics. The governing equations are the linearized Euler equations, which are further simplified to a set of equations in terms of acoustic potential, using the irrotational flow assumption, and subsequently solved in the frequency domain. Due to the special nature of acoustic wave propagation, the spatial discretization is performed using a spectral element method, where a tensor product of the nth-degree polynomials based on Chebyshev orthogonal functions is used to approximate variations within hexahedral elements. Non-reflecting boundary conditions are imposed at the far-field using a damping layer concept. This is done by augmenting the continuity equation with an additional term without modifying the governing equations as in PML methods. Solution of the linear system of equations for the acoustic problem is based on the Schur complement method, which is a nonoverlapping domain decomposition technique. The Schur matrix is first solved using a matrix-free iterative method, whose convergence is accelerated with a novel local preconditioner. The solution in the entire domain is then obtained by finding solutions in smaller subdomains. The 3D code also contains a mean flow solver based on the full potential equation in order to take into account the effects of flow variations around the nacelle on the scattering of the radiated sound field. All aspects of numerical simulations, including building and assembling the coefficient matrices, implementation of the Schur complement method, and solution of the system of equations for both the acoustic and mean flow problems are performed on multiprocessors in parallel using the resources of the CLUMEQ Supercomputer Center. A large number of test cases are presented, ranging in size from 100 000-2 000 000 unknowns for which, depending on the size of the problem, between 8-48 CPU's are

  16. 3D computational and experimental radiation transport assessments of Pu-Be sources and graded moderators for parcel screening

    NASA Astrophysics Data System (ADS)

    Ghita, Gabriel; Sjoden, Glenn; Baciak, James; Huang, Nancy

    2006-05-01

    The Florida Institute for Nuclear Detection and Security (FINDS) is currently working on the design and evaluation of a prototype neutron detector array that may be used for parcel screening systems and homeland security applications. In order to maximize neutron detector response over a wide spectrum of energies, moderator materials of different compositions and amounts are required, and can be optimized through 3-D discrete ordinates and Monte Carlo model simulations verified through measurement. Pu-Be sources can be used as didactic source materials to augment the design, optimization, and construction of detector arrays with proper characterization via transport analysis. To perform the assessments of the Pu-Be Source Capsule, 3-D radiation transport computations are used, including Monte Carlo (MCNP5) and deterministic (PENTRAN) methodologies. In establishing source geometry, we based our model on available source schematic data. Because both the MCNP5 and PENTRAN codes begin with source neutrons, exothermic (α,n) reactions are modeled using the SCALE5 code from ORNL to define the energy spectrum and the decay of the source. We combined our computational results with experimental data to fully validate our computational schemes, tools and models. Results from our computational models will then be used with experiment to generate a mosaic of the radiation spectrum. Finally, we discuss follow-up studies that highlight response optimization efforts in designing, building, and testing an array of detectors with varying moderators/thicknesses tagged to specific responses predicted using 3-D radiation transport models to augment special nuclear materials detection.

  17. Computer-Access-Code Matrices

    NASA Technical Reports Server (NTRS)

    Collins, Earl R., Jr.

    1990-01-01

    Authorized users respond to changing challenges with changing passwords. Scheme for controlling access to computers defeats eavesdroppers and "hackers". Based on password system of challenge and password or sign, challenge, and countersign correlated with random alphanumeric codes in matrices of two or more dimensions. Codes stored on floppy disk or plug-in card and changed frequently. For even higher security, matrices of four or more dimensions used, just as cubes compounded into hypercubes in concurrent processing.

  18. The NCOREL computer program for 3D nonlinear supersonic potential flow computations

    NASA Technical Reports Server (NTRS)

    Siclari, M. J.

    1983-01-01

    An innovative computational technique (NCOREL) was established for the treatment of three dimensional supersonic flows. The method is nonlinear in that it solves the nonconservative finite difference analog of the full potential equation and can predict the formation of supercritical cross flow regions, embedded and bow shocks. The method implicitly computes a conical flow at the apex (R = 0) of a spherical coordinate system and uses a fully implicit marching technique to obtain three dimensional cross flow solutions. This implies that the radial Mach number must remain supersonic. The cross flow solutions are obtained by using type dependent transonic relaxation techniques with the type dependency linked to the character of the cross flow velocity (i.e., subsonic/supersonic). The spherical coordinate system and marching on spherical surfaces is ideally suited to the computation of wing flows at low supersonic Mach numbers due to the elimination of the subsonic axial Mach number problems that exist in other marching codes that utilize Cartesian transverse marching planes.

  19. mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome.

    PubMed

    Meyer, Michael J; Lapcevic, Ryan; Romero, Alfonso E; Yoon, Mark; Das, Jishnu; Beltrán, Juan Felipe; Mort, Matthew; Stenson, Peter D; Cooper, David N; Paccanaro, Alberto; Yu, Haiyuan

    2016-05-01

    A new algorithm and Web server, mutation3D (http://mutation3d.org), proposes driver genes in cancer by identifying clusters of amino acid substitutions within tertiary protein structures. We demonstrate the feasibility of using a 3D clustering approach to implicate proteins in cancer based on explorations of single proteins using the mutation3D Web interface. On a large scale, we show that clustering with mutation3D is able to separate functional from nonfunctional mutations by analyzing a combination of 8,869 known inherited disease mutations and 2,004 SNPs overlaid together upon the same sets of crystal structures and homology models. Further, we present a systematic analysis of whole-genome and whole-exome cancer datasets to demonstrate that mutation3D identifies many known cancer genes as well as previously underexplored target genes. The mutation3D Web interface allows users to analyze their own mutation data in a variety of popular formats and provides seamless access to explore mutation clusters derived from over 975,000 somatic mutations reported by 6,811 cancer sequencing studies. The mutation3D Web interface is freely available with all major browsers supported. PMID:26841357

  20. Application of the Finite Orbit Width Version of the CQL3D Code to NBI +RF Heating of NSTX Plasma

    NASA Astrophysics Data System (ADS)

    Petrov, Yu. V.; Harvey, R. W.

    2015-11-01

    The CQL3D bounce-averaged Fokker-Planck (FP) code has been upgraded to include Finite-Orbit-Width (FOW) effects. The calculations can be done either with a fast Hybrid-FOW option or with a slower but neoclassically complete full-FOW option. The banana regime neoclassical radial transport appears naturally in the full-FOW version by averaging the local collision coefficients along guiding center orbits, with a proper transformation matrix from local (R, Z) coordinates to the midplane computational coordinates, where the FP equation is solved. In a similar way, the local quasilinear rf diffusion terms give rise to additional radial transport of orbits. The full-FOW version is applied to simulation of ion heating in NSTX plasma. It is demonstrated that it can describe the physics of transport phenomena in plasma with auxiliary heating, in particular, the enhancement of the radial transport of ions by RF heating and the occurrence of the bootstrap current. Because of the bounce-averaging on the FPE, the results are obtained in a relatively short computational time. A typical full-FOW run time is 30 min using 140 MPI cores. Due to an implicit solver, calculations with a large time step (tested up to dt = 0.5 sec) remain stable. Supported by USDOE grants SC0006614, ER54744, and ER44649.

  1. Efficient 3D geometric and Zernike moments computation from unstructured surface meshes.

    PubMed

    Pozo, José María; Villa-Uriol, Maria-Cruz; Frangi, Alejandro F

    2011-03-01

    This paper introduces and evaluates a fast exact algorithm and a series of faster approximate algorithms for the computation of 3D geometric moments from an unstructured surface mesh of triangles. Being based on the object surface reduces the computational complexity of these algorithms with respect to volumetric grid-based algorithms. In contrast, it can only be applied for the computation of geometric moments of homogeneous objects. This advantage and restriction is shared with other proposed algorithms based on the object boundary. The proposed exact algorithm reduces the computational complexity for computing geometric moments up to order N with respect to previously proposed exact algorithms, from N(9) to N(6). The approximate series algorithm appears as a power series on the rate between triangle size and object size, which can be truncated at any desired degree. The higher the number and quality of the triangles, the better the approximation. This approximate algorithm reduces the computational complexity to N(3). In addition, the paper introduces a fast algorithm for the computation of 3D Zernike moments from the computed geometric moments, with a computational complexity N(4), while the previously proposed algorithm is of order N(6). The error introduced by the proposed approximate algorithms is evaluated in different shapes and the cost-benefit ratio in terms of error, and computational time is analyzed for different moment orders. PMID:20714011

  2. Organ printing: computer-aided jet-based 3D tissue engineering.

    PubMed

    Mironov, Vladimir; Boland, Thomas; Trusk, Thomas; Forgacs, Gabor; Markwald, Roger R

    2003-04-01

    Tissue engineering technology promises to solve the organ transplantation crisis. However, assembly of vascularized 3D soft organs remains a big challenge. Organ printing, which we define as computer-aided, jet-based 3D tissue-engineering of living human organs, offers a possible solution. Organ printing involves three sequential steps: pre-processing or development of "blueprints" for organs; processing or actual organ printing; and postprocessing or organ conditioning and accelerated organ maturation. A cell printer that can print gels, single cells and cell aggregates has been developed. Layer-by-layer sequentially placed and solidified thin layers of a thermo-reversible gel could serve as "printing paper". Combination of an engineering approach with the developmental biology concept of embryonic tissue fluidity enables the creation of a new rapid prototyping 3D organ printing technology, which will dramatically accelerate and optimize tissue and organ assembly. PMID:12679063

  3. Porting the 3D Gyrokinetic Particle-in-cell Code GTC to the CRAY/NEC SX-6 Vector Architecture: Perspectives and Challenges

    SciTech Connect

    S. Ethier; Z. Lin

    2003-09-15

    Several years of optimization on the super-scalar architecture has made it more difficult to port the current version of the 3D particle-in-cell code GTC to the CRAY/NEC SX-6 vector architecture. This paper explains the initial work that has been done to port this code to the SX-6 computer and to optimize the most time consuming parts. Early performance results are shown and compared to the same test done on the IBM SP Power 3 and Power 4 machines.

  4. Acoustic Scattering by Three-Dimensional Stators and Rotors Using the SOURCE3D Code. Volume 2; Scattering Plots

    NASA Technical Reports Server (NTRS)

    Meyer, Harold D.

    1999-01-01

    This second volume of Acoustic Scattering by Three-Dimensional Stators and Rotors Using the SOURCE3D Code provides the scattering plots referenced by Volume 1. There are 648 plots. Half are for the 8750 rpm "high speed" operating condition and the other half are for the 7031 rpm "mid speed" operating condition.

  5. Using the CAVE virtual-reality environment as an aid to 3-D electromagnetic field computation

    SciTech Connect

    Turner, L.R.; Levine, D.; Huang, M.; Papka, M; Kettunen, L.

    1995-08-01

    One of the major problems in three-dimensional (3-D) field computation is visualizing the resulting 3-D field distributions. A virtual-reality environment, such as the CAVE, (CAVE Automatic Virtual Environment) is helping to overcome this problem, thus making the results of computation more usable for designers and users of magnets and other electromagnetic devices. As a demonstration of the capabilities of the CAVE, the elliptical multipole wiggler (EMW), an insertion device being designed for the Advanced Photon Source (APS) now being commissioned at Argonne National Laboratory (ANL), wa made visible, along with its fields and beam orbits. Other uses of the CAVE in preprocessing and postprocessing computation for electromagnetic applications are also discussed.

  6. Synesthetic art through 3-D projection: The requirements of a computer-based supermedium

    NASA Technical Reports Server (NTRS)

    Mallary, Robert

    1989-01-01

    A computer-based form of multimedia art is proposed that uses the computer to fuse aspects of painting, sculpture, dance, music, film, and other media into a one-to-one synthesia of image and sound for spatially synchronous 3-D projection. Called synesthetic art, this conversion of many varied media into an aesthetically unitary experience determines the character and requirements of the system and its software. During the start-up phase, computer stereographic systems are unsuitable for software development. Eventually, a new type of illusory-projective supermedium will be required to achieve the needed combination of large-format projection and convincing real life presence, and to handle the vast amount of 3-D visual and acoustic information required. The influence of the concept on the author's research and creative work is illustrated through two examples.

  7. Computational optical-sectioning microscopy for 3D quantization of cell motion: results and challenges

    NASA Astrophysics Data System (ADS)

    McNally, James G.

    1994-09-01

    How cells move and navigate within a 3D tissue mass is of central importance in such diverse problems as embryonic development, wound healing and metastasis. This locomotion can now be visualized and quantified by using computation optical-sectioning microscopy. In this approach, a series of 2D images at different depths in a specimen are stacked to construct a 3D image, and then with a knowledge of the microscope's point-spread function, the actual distribution of fluorescent intensity in the specimen is estimated via computation. When coupled with wide-field optics and a cooled CCD camera, this approach permits non-destructive 3D imaging of living specimens over long time periods. With these techniques, we have observed a complex diversity of motile behaviors in a model embryonic system, the cellular slime mold Dictyostelium. To understand the mechanisms which control these various behaviors, we are examining motion in various Dictyostelium mutants with known defects in proteins thought to be essential for signal reception, cell-cell adhesion or locomotion. This application of computational techniques to analyze 3D cell locomotion raises several technical challenges. Image restoration techniques must be fast enough to process numerous 1 Gbyte time-lapse data sets (16 Mbytes per 3D image X 60 time points). Because some cells are weakly labeled and background intensity is often high due to unincorporated dye, the SNR in some of these images is poor. Currently, the images are processed by a regularized linear least- squares restoration method, and occasionally by a maximum-likelihood method. Also required for these studies are accurate automated- tracking procedures to generate both 3D trajectories for individual cells and 3D flows for a group of cells. Tracking is currently done independently for each cell, using a cell's image as a template to search for a similar image at the next time point. Finally, sophisticated visualization techniques are needed to view the

  8. 3D unsteady computer modeling of industrial scale Ky and Cz sapphire crystal growth

    NASA Astrophysics Data System (ADS)

    Demina, S. E.; Kalaev, V. V.

    2011-04-01

    In the present work, 3D features of melt convection during sapphire growth of 100 mm diameter Cz and of 200 mm diameter Ky crystals are studied. The approach accounting for radiative heat exchange with absorption and a specular reflection in the crystal, which we applied in 2D modeling [1-3], has been extended to 3D computational domains and coupled to 3D heat transfer in the melt, crystal, and crucible. 3D melt unsteady convection together with crystallization front formation are taken into account within the Direct Numerical Simulation (DNS) approach. Results of 3D modeling are discussed in detail and quantitatively compared to the previously reported data of 2D modeling and experiments [2,3]. It has been found that the features of unsteady melt convection during the "before seeding", "seeding", and "shouldering" growth stages are quite different from each other, which necessitates a flexible control of the radial and vertical temperature gradients in the crucible to provide optimal conditions for stable growth of high quality sapphire crystals.

  9. Analysis of 3-D images of dental imprints using computer vision

    NASA Astrophysics Data System (ADS)

    Aubin, Michele; Cote, Jean; Laurendeau, Denis; Poussart, Denis

    1992-05-01

    This paper addressed two important aspects of dental analysis: (1) location and (2) identification of the types of teeth by means of 3-D image acquisition and segmentation. The 3-D images of both maxillaries are acquired using a wax wafer as support. The interstices between teeth are detected by non-linear filtering of the 3-D and grey-level data. Two operators are presented: one for the detection of the interstices between incisors, canines, and premolars and one for those between molars. Teeth are then identified by mapping the imprint under analysis on the computer model of an 'ideal' imprint. For the mapping to be valid, a set of three reference points is detected on the imprint. Then, the points are put in correspondence with similar points on the model. Two such points are chosen based on a least-squares fit of a second-order polynomial of the 3-D data in the area of canines. This area is of particular interest since the canines show a very characteristic shape and are easily detected on the imprint. The mapping technique is described in detail in the paper as well as pre-processing of the 3-D profiles. Experimental results are presented for different imprints.

  10. Embedded morphological dilation coding for 2D and 3D images

    NASA Astrophysics Data System (ADS)

    Lazzaroni, Fabio; Signoroni, Alberto; Leonardi, Riccardo

    2002-01-01

    Current wavelet-based image coders obtain high performance thanks to the identification and the exploitation of the statistical properties of natural images in the transformed domain. Zerotree-based algorithms, as Embedded Zerotree Wavelets (EZW) and Set Partitioning In Hierarchical Trees (SPIHT), offer high Rate-Distortion (RD) coding performance and low computational complexity by exploiting statistical dependencies among insignificant coefficients on hierarchical subband structures. Another possible approach tries to predict the clusters of significant coefficients by means of some form of morphological dilation. An example of a morphology-based coder is the Significance-Linked Connected Component Analysis (SLCCA) that has shown performance which are comparable to the zerotree-based coders but is not embedded. A new embedded bit-plane coder is proposed here based on morphological dilation of significant coefficients and context based arithmetic coding. The algorithm is able to exploit both intra-band and inter-band statistical dependencies among wavelet significant coefficients. Moreover, the same approach is used both for two and three-dimensional wavelet-based image compression. Finally we the algorithms are tested on some 2D images and on a medical volume, by comparing the RD results to those obtained with the state-of-the-art wavelet-based coders.

  11. Numerical Simulation of Boiling Two-Phase Flow in Tight-Lattice Rod Bundle by 3-Dimensional Two-Fluid Model Code ACE-3D

    NASA Astrophysics Data System (ADS)

    Yoshida, Hiroyuki; Misawa, Takeharu; Takase, Kazuyuki

    Two-fluid model can simulate two-phase flow by computational cost less than detailed two-phase flow simulation method such as interface tracking method or particle interaction method. Therefore, two-fluid model is useful for thermal hydraulic analysis in large-scale domain such as a rod bundle. Japan Atomic Energy Agency (JAEA) develops three dimensional two-fluid model analysis code ACE-3D that adopts boundary fitted coordinate system in order to simulate complex shape flow channel. In this paper, boiling two-phase flow analysis in a tight-lattice rod bundle was performed by ACE-3D code. The parallel computation using 126 CPUs was applied to this analysis. In the results, the void fraction, which distributes in outermost region of rod bundle, is lower than that in center region of rod bundle. The tendency of void fraction distribution agreed with the measurement results by neutron radiography qualitatively. To evaluate effects of two-phase flow model used in ACE-3D code, numerical simulation of boiling two-phase in tight-lattice rod bundle with no lift force model was also performed. From the comparison of calculated results, it was concluded that the effects of lift force model were not so large for overall void fraction distribution of tight-lattice rod bundle. However, the lift force model is important for local void fraction distribution of fuel bundles.

  12. SummitView 1.0: a code to automatically generate 3D solid models of surface micro-machining based MEMS designs.

    SciTech Connect

    McBride, Cory L. (Elemental Technologies, American Fort, UT); Yarberry, Victor R.; Schmidt, Rodney Cannon; Meyers, Ray J.

    2006-11-01

    This report describes the SummitView 1.0 computer code developed at Sandia National Laboratories. SummitView is designed to generate a 3D solid model, amenable to visualization and meshing, that represents the end state of a microsystem fabrication process such as the SUMMiT (Sandia Ultra-Planar Multilevel MEMS Technology) V process. Functionally, SummitView performs essentially the same computational task as an earlier code called the 3D Geometry modeler [1]. However, because SummitView is based on 2D instead of 3D data structures and operations, it has significant speed and robustness advantages. As input it requires a definition of both the process itself and the collection of individual 2D masks created by the designer and associated with each of the process steps. The definition of the process is contained in a special process definition file [2] and the 2D masks are contained in MEM format files [3]. The code is written in C++ and consists of a set of classes and routines. The classes represent the geometric data and the SUMMiT V process steps. Classes are provided for the following process steps: Planar Deposition, Planar Etch, Conformal Deposition, Dry Etch, Wet Etch and Release Etch. SummitView is built upon the 2D Boolean library GBL-2D [4], and thus contains all of that library's functionality.

  13. TBIEM3D: A Computer Program for Predicting Ducted Fan Engine Noise. Version 1.1

    NASA Technical Reports Server (NTRS)

    Dunn, M. H.

    1997-01-01

    This document describes the usage of the ducted fan noise prediction program TBIEM3D (Thin duct - Boundary Integral Equation Method - 3 Dimensional). A scattering approach is adopted in which the acoustic pressure field is split into known incident and unknown scattered parts. The scattering of fan-generated noise by a finite length circular cylinder in a uniform flow field is considered. The fan noise is modeled by a collection of spinning point thrust dipoles. The program, based on a Boundary Integral Equation Method (BIEM), calculates circumferential modal coefficients of the acoustic pressure at user-specified field locations. The duct interior can be of the hard wall type or lined. The duct liner is axisymmetric, locally reactive, and can be uniform or axially segmented. TBIEM3D is written in the FORTRAN programming language. Input to TBIEM3D is minimal and consists of geometric and kinematic parameters. Discretization and numerical parameters are determined automatically by the code. Several examples are presented to demonstrate TBIEM3D capabilities.

  14. Visualization of anthropometric measures of workers in computer 3D modeling of work place.

    PubMed

    Mijović, B; Ujević, D; Baksa, S

    2001-12-01

    In this work, 3D visualization of a work place by means of a computer-made 3D-machine model and computer animation of a worker have been performed. By visualization of 3D characters in inverse kinematic and dynamic relation with the operating part of a machine, the biomechanic characteristics of worker's body have been determined. The dimensions of a machine have been determined by an inspection of technical documentation as well as by direct measurements and recordings of the machine by camera. On the basis of measured body height of workers all relevant anthropometric measures have been determined by a computer program developed by the authors. By knowing the anthropometric measures, the vision fields and the scope zones while forming work places, exact postures of workers while performing technological procedures were determined. The minimal and maximal rotation angles and the translation of upper and lower arm which are basis for the analysis of worker burdening were analyzed. The dimensions of the seized space of a body are obtained by computer anthropometric analysis of movement, e.g. range of arms, position of legs, head, back. The influence of forming of a work place on correct postures of workers during work has been reconsidered and thus the consumption of energy and fatigue can be reduced to a minimum. PMID:11811295

  15. The DANTE Boltzmann transport solver: An unstructured mesh, 3-D, spherical harmonics algorithm compatible with parallel computer architectures

    SciTech Connect

    McGhee, J.M.; Roberts, R.M.; Morel, J.E.

    1997-06-01

    A spherical harmonics research code (DANTE) has been developed which is compatible with parallel computer architectures. DANTE provides 3-D, multi-material, deterministic, transport capabilities using an arbitrary finite element mesh. The linearized Boltzmann transport equation is solved in a second order self-adjoint form utilizing a Galerkin finite element spatial differencing scheme. The core solver utilizes a preconditioned conjugate gradient algorithm. Other distinguishing features of the code include options for discrete-ordinates and simplified spherical harmonics angular differencing, an exact Marshak boundary treatment for arbitrarily oriented boundary faces, in-line matrix construction techniques to minimize memory consumption, and an effective diffusion based preconditioner for scattering dominated problems. Algorithm efficiency is demonstrated for a massively parallel SIMD architecture (CM-5), and compatibility with MPP multiprocessor platforms or workstation clusters is anticipated.

  16. Fullwave coupling to a 3D antenna code using Green's function formulation of wave-particle response

    NASA Astrophysics Data System (ADS)

    Wright, John; Bonoli, P. T.; Bilato, R.; Brambilla, M.; Maggiora, R.; Lancellotti, V.

    2006-10-01

    Using the fullwave code, TORIC, and the 3D antenna code, TOPICA, we construct a complete linear system for the RF driven plasma. The 3D finite element antenna code, TOPICA, requires an admittance, Y, for the plasma, where B=YE. In this work, TORIC was modified to allow excitation of the (Eη, Eζ) electric field components at the plasma surface, corresponding to a single poloidal and toroidal mode number combination (m,n). This leads to the tensor response: Yn= ( ll Yηη& YηζYζη& Yζζ), where each of the Yn submatrices is Nm in size. It is shown that the admittance matrix is equivalent to a Green's function calculation for the fullwave system and the net work done is less than twice a single fullwave calculation. The admittance calculation is used with loading calculation from TOPICA to construct self consistent plasma and antenna currents.

  17. Benchmark of Lower Hybrid coupling codes (Brambilla, GRILL3D-U, TOPLHA) with the FTU conventional grill experimental data

    NASA Astrophysics Data System (ADS)

    Ceccuzzi, Silvio; Maggiora, Riccardo; Milanesio, Daniele; Mirizzi, Francesco; Panaccione, Luigi

    2011-12-01

    The present work compares and experimentally validates the results coming out from the following three Lower Hybrid (LH) coupling codes: Brambilla code (M. Brambilla), GRILL3D-U (Mikhail Irzak, A. F. Ioffe Physico-Technical Institute, Russia) and TOPLHA (Politecnico di Torino, Italy). The conventional grill antenna, operating in FTU in different scenarios, is used as benchmark. The validation with experimental data is carried out with respect to the average reflection coefficients at the input of a row of the grill, considering two different phasings between adjacent waveguides: -90 ° and -75 °. A comparison between calculated power spectra is also presented. Good agreement can be observed for all the simulated plasma profiles and waveguide phasings between experimental data and codes, in particular for the most recent numerical tools, namely GRILL3D-U and TOPLHA.

  18. User's guide to the NOZL3D and NOZLIC computer programs

    NASA Technical Reports Server (NTRS)

    Thomas, P. D.

    1980-01-01

    Complete FORTRAN listings and running instructions are given for a set of computer programs that perform an implicit numerical solution to the unsteady Navier-Stokes equations to predict the flow characteristics and performance of nonaxisymmetric nozzles. The set includes the NOZL3D program, which performs the flow computations; the NOZLIC program, which sets up the flow field initial conditions for general nozzle configurations, and also generates the computational grid for simple two dimensional and axisymmetric configurations; and the RGRIDD program, which generates the computational grid for complicated three dimensional configurations. The programs are designed specifically for the NASA-Langley CYBER 175 computer, and employ auxiliary disk files for primary data storage. Input instructions and computed results are given for four test cases that include two dimensional, three dimensional, and axisymmetric configurations.

  19. Using the DEWSBR computer code

    SciTech Connect

    Cable, G.D.

    1989-09-01

    A computer code is described which is designed to determine the fraction of time during which a given ground location is observable from one or more members of a satellite constellation in earth orbit. Ground visibility parameters are determined from the orientation and strength of an appropriate ionized cylinder (used to simulate a beam experiment) at the selected location. Satellite orbits are computed in a simplified two-body approximation computation. A variety of printed and graphical outputs is provided. 9 refs., 50 figs., 2 tabs.

  20. Learning Dictionaries of Sparse Codes of 3D Movements of Body Joints for Real-Time Human Activity Understanding

    PubMed Central

    Qi, Jin; Yang, Zhiyong

    2014-01-01

    Real-time human activity recognition is essential for human-robot interactions for assisted healthy independent living. Most previous work in this area is performed on traditional two-dimensional (2D) videos and both global and local methods have been used. Since 2D videos are sensitive to changes of lighting condition, view angle, and scale, researchers begun to explore applications of 3D information in human activity understanding in recently years. Unfortunately, features that work well on 2D videos usually don't perform well on 3D videos and there is no consensus on what 3D features should be used. Here we propose a model of human activity recognition based on 3D movements of body joints. Our method has three steps, learning dictionaries of sparse codes of 3D movements of joints, sparse coding, and classification. In the first step, space-time volumes of 3D movements of body joints are obtained via dense sampling and independent component analysis is then performed to construct a dictionary of sparse codes for each activity. In the second step, the space-time volumes are projected to the dictionaries and a set of sparse histograms of the projection coefficients are constructed as feature representations of the activities. Finally, the sparse histograms are used as inputs to a support vector machine to recognize human activities. We tested this model on three databases of human activities and found that it outperforms the state-of-the-art algorithms. Thus, this model can be used for real-time human activity recognition in many applications. PMID:25473850

  1. Learning dictionaries of sparse codes of 3D movements of body joints for real-time human activity understanding.

    PubMed

    Qi, Jin; Yang, Zhiyong

    2014-01-01

    Real-time human activity recognition is essential for human-robot interactions for assisted healthy independent living. Most previous work in this area is performed on traditional two-dimensional (2D) videos and both global and local methods have been used. Since 2D videos are sensitive to changes of lighting condition, view angle, and scale, researchers begun to explore applications of 3D information in human activity understanding in recently years. Unfortunately, features that work well on 2D videos usually don't perform well on 3D videos and there is no consensus on what 3D features should be used. Here we propose a model of human activity recognition based on 3D movements of body joints. Our method has three steps, learning dictionaries of sparse codes of 3D movements of joints, sparse coding, and classification. In the first step, space-time volumes of 3D movements of body joints are obtained via dense sampling and independent component analysis is then performed to construct a dictionary of sparse codes for each activity. In the second step, the space-time volumes are projected to the dictionaries and a set of sparse histograms of the projection coefficients are constructed as feature representations of the activities. Finally, the sparse histograms are used as inputs to a support vector machine to recognize human activities. We tested this model on three databases of human activities and found that it outperforms the state-of-the-art algorithms. Thus, this model can be used for real-time human activity recognition in many applications. PMID:25473850

  2. Validation of the BISON 3D Fuel Performance Code: Temperature Comparisons for Concentrically and Eccentrically Located Fuel Pellets

    SciTech Connect

    J. D. Hales; D. M. Perez; R. L. Williamson; S. R. Novascone; B. W. Spencer

    2013-03-01

    BISON is a modern finite-element based nuclear fuel performance code that has been under development at the Idaho National Laboratory (USA) since 2009. The code is applicable to both steady and transient fuel behaviour and is used to analyse either 2D axisymmetric or 3D geometries. BISON has been applied to a variety of fuel forms including LWR fuel rods, TRISO-coated fuel particles, and metallic fuel in both rod and plate geometries. Code validation is currently in progress, principally by comparison to instrumented LWR fuel rods. Halden IFA experiments constitute a large percentage of the current BISON validation base. The validation emphasis here is centreline temperatures at the beginning of fuel life, with comparisons made to seven rods from the IFA-431 and 432 assemblies. The principal focus is IFA-431 Rod 4, which included concentric and eccentrically located fuel pellets. This experiment provides an opportunity to explore 3D thermomechanical behaviour and assess the 3D simulation capabilities of BISON. Analysis results agree with experimental results showing lower fuel centreline temperatures for eccentric fuel with the peak temperature shifted from the centreline. The comparison confirms with modern 3D analysis tools that the measured temperature difference between concentric and eccentric pellets is not an artefact and provides a quantitative explanation for the difference.

  3. Gust Acoustics Computation with a Space-Time CE/SE Parallel 3D Solver

    NASA Technical Reports Server (NTRS)

    Wang, X. Y.; Himansu, A.; Chang, S. C.; Jorgenson, P. C. E.; Reddy, D. R. (Technical Monitor)

    2002-01-01

    The benchmark Problem 2 in Category 3 of the Third Computational Aero-Acoustics (CAA) Workshop is solved using the space-time conservation element and solution element (CE/SE) method. This problem concerns the unsteady response of an isolated finite-span swept flat-plate airfoil bounded by two parallel walls to an incident gust. The acoustic field generated by the interaction of the gust with the flat-plate airfoil is computed by solving the 3D (three-dimensional) Euler equations in the time domain using a parallel version of a 3D CE/SE solver. The effect of the gust orientation on the far-field directivity is studied. Numerical solutions are presented and compared with analytical solutions, showing a reasonable agreement.

  4. Computer access security code system

    NASA Technical Reports Server (NTRS)

    Collins, Earl R., Jr. (Inventor)

    1990-01-01

    A security code system for controlling access to computer and computer-controlled entry situations comprises a plurality of subsets of alpha-numeric characters disposed in random order in matrices of at least two dimensions forming theoretical rectangles, cubes, etc., such that when access is desired, at least one pair of previously unused character subsets not found in the same row or column of the matrix is chosen at random and transmitted by the computer. The proper response to gain access is transmittal of subsets which complete the rectangle, and/or a parallelepiped whose opposite corners were defined by first groups of code. Once used, subsets are not used again to absolutely defeat unauthorized access by eavesdropping, and the like.

  5. Computed Tomography and its Application for the 3D Characterization of Coarse Grained Meteorites

    NASA Technical Reports Server (NTRS)

    Gillies, Donald C.; Engel, H. P.; Carpenter, P. K.

    2004-01-01

    With judicious selection of parameters, computed tomography can provide high precision density data. Such data can lead to a non-destructive determination of the phases and phase distribution within large solid objects. Of particular interest is the structure of the Mundrabilla meteorite, which has 25 volumes, percent of a sulfide within a metallic meteorite. 3D digital imaging has enabled a quantitative evaluation of the distribution and contiguity of the phases to be determined.

  6. Code and Solution Verification of 3D Numerical Modeling of Flow in the Gust Erosion Chamber

    NASA Astrophysics Data System (ADS)

    Yuen, A.; Bombardelli, F. A.

    2014-12-01

    Erosion microcosms are devices commonly used to investigate the erosion and transport characteristics of sediments at the bed of rivers, lakes, or estuaries. In order to understand the results these devices provide, the bed shear stress and flow field need to be accurately described. In this research, the UMCES Gust Erosion Microcosm System (U-GEMS) is numerically modeled using Finite Volume Method. The primary aims are to simulate the bed shear stress distribution at the surface of the sediment core/bottom of the microcosm, and to validate the U-GEMS produces uniform bed shear stress at the bottom of the microcosm. The mathematical model equations are solved by on a Cartesian non-uniform grid. Multiple numerical runs were developed with different input conditions and configurations. Prior to developing the U-GEMS model, the General Moving Objects (GMO) model and different momentum algorithms in the code were verified. Code verification of these solvers was done via simulating the flow inside the top wall driven square cavity on different mesh sizes to obtain order of convergence. The GMO model was used to simulate the top wall in the top wall driven square cavity as well as the rotating disk in the U-GEMS. Components simulated with the GMO model were rigid bodies that could have any type of motion. In addition cross-verification was conducted as results were compared with numerical results by Ghia et al. (1982), and good agreement was found. Next, CFD results were validated by simulating the flow within the conventional microcosm system without suction and injection. Good agreement was found when the experimental results by Khalili et al. (2008) were compared. After the ability of the CFD solver was proved through the above code verification steps. The model was utilized to simulate the U-GEMS. The solution was verified via classic mesh convergence study on four consecutive mesh sizes, in addition to that Grid Convergence Index (GCI) was calculated and based on

  7. 2D virtual texture on 3D real object with coded structured light

    NASA Astrophysics Data System (ADS)

    Molinier, Thierry; Fofi, David; Salvi, Joaquim; Gorria, Patrick

    2008-02-01

    Augmented reality is used to improve color segmentation on human body or on precious no touch artifacts. We propose a technique to project a synthesized texture on real object without contact. Our technique can be used in medical or archaeological application. By projecting a suitable set of light patterns onto the surface of a 3D real object and by capturing images with a camera, a large number of correspondences can be found and the 3D points can be reconstructed. We aim to determine these points of correspondence between cameras and projector from a scene without explicit points and normals. We then project an adjusted texture onto the real object surface. We propose a global and automatic method to virtually texture a 3D real object.

  8. Modeling tumor/polyp/lesion structure in 3D for computer-aided diagnosis in colonoscopy

    NASA Astrophysics Data System (ADS)

    Chen, Chao-I.; Sargent, Dusty; Wang, Yuan-Fang

    2010-02-01

    We describe a software system for building three-dimensional (3D) models from colonoscopic videos. The system is end-to-end in the sense that it takes as input raw image frames-shot during a colon exam-and produces the 3D structure of objects of interest (OOI), such as tumors, polyps, and lesions. We use the structure-from-motion (SfM) approach in computer vision which analyzes an image sequence in which camera's position and aim vary relative to the OOI. The varying pose of the camera relative to the OOI induces the motion-parallax effect which allows 3D depth of the OOI to be inferred. Unlike the traditional SfM system pipeline, our software system contains many check-and-balance mechanisms to ensure robustness, and the analysis from earlier stages of the pipeline is used to guide the later processing stages to better handle challenging medical data. The constructed 3D models allow the pathology (growth and change in both structure and appearance) to be monitored over time.

  9. 3D animation of facial plastic surgery based on computer graphics

    NASA Astrophysics Data System (ADS)

    Zhang, Zonghua; Zhao, Yan

    2013-12-01

    More and more people, especial women, are getting desired to be more beautiful than ever. To some extent, it becomes true because the plastic surgery of face was capable in the early 20th and even earlier as doctors just dealing with war injures of face. However, the effect of post-operation is not always satisfying since no animation could be seen by the patients beforehand. In this paper, by combining plastic surgery of face and computer graphics, a novel method of simulated appearance of post-operation will be given to demonstrate the modified face from different viewpoints. The 3D human face data are obtained by using 3D fringe pattern imaging systems and CT imaging systems and then converted into STL (STereo Lithography) file format. STL file is made up of small 3D triangular primitives. The triangular mesh can be reconstructed by using hash function. Top triangular meshes in depth out of numbers of triangles must be picked up by ray-casting technique. Mesh deformation is based on the front triangular mesh in the process of simulation, which deforms interest area instead of control points. Experiments on face model show that the proposed 3D animation facial plastic surgery can effectively demonstrate the simulated appearance of post-operation.

  10. Computer assisted 3D pre-operative planning tool for femur fracture orthopedic surgery

    NASA Astrophysics Data System (ADS)

    Gamage, Pavan; Xie, Sheng Quan; Delmas, Patrice; Xu, Wei Liang

    2010-02-01

    Femur shaft fractures are caused by high impact injuries and can affect gait functionality if not treated correctly. Until recently, the pre-operative planning for femur fractures has relied on two-dimensional (2D) radiographs, light boxes, tracing paper, and transparent bone templates. The recent availability of digital radiographic equipment has to some extent improved the workflow for preoperative planning. Nevertheless, imaging is still in 2D X-rays and planning/simulation tools to support fragment manipulation and implant selection are still not available. Direct three-dimensional (3D) imaging modalities such as Computed Tomography (CT) are also still restricted to a minority of complex orthopedic procedures. This paper proposes a software tool which allows orthopedic surgeons to visualize, diagnose, plan and simulate femur shaft fracture reduction procedures in 3D. The tool utilizes frontal and lateral 2D radiographs to model the fracture surface, separate a generic bone into the two fractured fragments, identify the pose of each fragment, and automatically customize the shape of the bone. The use of 3D imaging allows full spatial inspection of the fracture providing different views through the manipulation of the interactively reconstructed 3D model, and ultimately better pre-operative planning.

  11. CELSS-3D: a broad computer model simulating a controlled ecological life support system.

    PubMed

    Schneegurt, M A; Sherman, L A

    1997-01-01

    CELSS-3D is a dynamic, deterministic, and discrete computer simulation of a controlled ecological life support system (CELSS) focusing on biological issues. A series of linear difference equations within a graphic-based modeling environment, the IThink program, was used to describe a modular CELSS system. The overall model included submodels for crop growth chambers, food storage reservoirs, the human crew, a cyanobacterial growth chamber, a waste processor, fixed nitrogen reservoirs, and the atmospheric gases, CO, O2, and N2. The primary process variable was carbon, although oxygen and nitrogen flows were also modeled. Most of the input data used in CELSS-3D were from published sources. A separate linear optimization program, What'sBest!, was used to compare options for the crew's vegetarian diet. CELSS-3D simulations were run for the equivalent of 3 years with a 1-h time interval. Output from simulations run under nominal conditions was used to illustrate dynamic changes in the concentrations of atmospheric gases. The modular design of CELSS-3D will allow other configurations and various failure scenarios to be tested and compared. PMID:11540449

  12. Full 3-D OCT-based pseudophakic custom computer eye model.

    PubMed

    Sun, M; Pérez-Merino, P; Martinez-Enriquez, E; Velasco-Ocana, M; Marcos, S

    2016-03-01

    We compared measured wave aberrations in pseudophakic eyes implanted with aspheric intraocular lenses (IOLs) with simulated aberrations from numerical ray tracing on customized computer eye models, built using quantitative 3-D OCT-based patient-specific ocular geometry. Experimental and simulated aberrations show high correlation (R = 0.93; p<0.0001) and similarity (RMS for high order aberrations discrepancies within 23.58%). This study shows that full OCT-based pseudophakic custom computer eye models allow understanding the relative contribution of optical geometrical and surgically-related factors to image quality, and are an excellent tool for characterizing and improving cataract surgery. PMID:27231608

  13. Computation of an Underexpanded 3-D Rectangular Jet by the CE/SE Method

    NASA Technical Reports Server (NTRS)

    Loh, Ching Y.; Himansu, Ananda; Wang, Xiao Y.; Jorgenson, Philip C. E.

    2000-01-01

    Recently, an unstructured three-dimensional space-time conservation element and solution element (CE/SE) Euler solver was developed. Now it is also developed for parallel computation using METIS for domain decomposition and MPI (message passing interface). The method is employed here to numerically study the near-field of a typical 3-D rectangular under-expanded jet. For the computed case-a jet with Mach number Mj = 1.6. with a very modest grid of 1.7 million tetrahedrons, the flow features such as the shock-cell structures and the axis switching, are in good qualitative agreement with experimental results.

  14. The implementation of the upwind leapfrog scheme for 3D electromagnetic scattering on massively parallel computers

    SciTech Connect

    Nguyen, B.T.; Hutchinson, S.A.

    1995-07-01

    The upwind leapfrog scheme for electromagnetic scattering is briefly described. Its application to the 3D Maxwell`s time domain equations is shown in detail. The scheme`s use of upwind characteristic variables and a narrow stencil result in a smaller demand in communication overhead, making it ideal for implementation on distributed memory parallel computers. The algorithm`s implementation on two message passing computers, a 1024-processor nCUBE 2 and a 1840-processor Intel Paragon, is described. Performance evaluation demonstrates that the scheme performs well with both good scaling qualities and high efficiencies on these machines.

  15. Full 3-D OCT-based pseudophakic custom computer eye model

    PubMed Central

    Sun, M.; Pérez-Merino, P.; Martinez-Enriquez, E.; Velasco-Ocana, M.; Marcos, S.

    2016-01-01

    We compared measured wave aberrations in pseudophakic eyes implanted with aspheric intraocular lenses (IOLs) with simulated aberrations from numerical ray tracing on customized computer eye models, built using quantitative 3-D OCT-based patient-specific ocular geometry. Experimental and simulated aberrations show high correlation (R = 0.93; p<0.0001) and similarity (RMS for high order aberrations discrepancies within 23.58%). This study shows that full OCT-based pseudophakic custom computer eye models allow understanding the relative contribution of optical geometrical and surgically-related factors to image quality, and are an excellent tool for characterizing and improving cataract surgery. PMID:27231608

  16. Distributed Network, Wireless and Cloud Computing Enabled 3-D Ultrasound; a New Medical Technology Paradigm

    PubMed Central

    Meir, Arie; Rubinsky, Boris

    2009-01-01

    Medical technologies are indispensable to modern medicine. However, they have become exceedingly expensive and complex and are not available to the economically disadvantaged majority of the world population in underdeveloped as well as developed parts of the world. For example, according to the World Health Organization about two thirds of the world population does not have access to medical imaging. In this paper we introduce a new medical technology paradigm centered on wireless technology and cloud computing that was designed to overcome the problems of increasing health technology costs. We demonstrate the value of the concept with an example; the design of a wireless, distributed network and central (cloud) computing enabled three-dimensional (3-D) ultrasound system. Specifically, we demonstrate the feasibility of producing a 3-D high end ultrasound scan at a central computing facility using the raw data acquired at the remote patient site with an inexpensive low end ultrasound transducer designed for 2-D, through a mobile device and wireless connection link between them. Producing high-end 3D ultrasound images with simple low-end transducers reduces the cost of imaging by orders of magnitude. It also removes the requirement of having a highly trained imaging expert at the patient site, since the need for hand-eye coordination and the ability to reconstruct a 3-D mental image from 2-D scans, which is a necessity for high quality ultrasound imaging, is eliminated. This could enable relatively untrained medical workers in developing nations to administer imaging and a more accurate diagnosis, effectively saving the lives of people. PMID:19936236

  17. Distributed network, wireless and cloud computing enabled 3-D ultrasound; a new medical technology paradigm.

    PubMed

    Meir, Arie; Rubinsky, Boris

    2009-01-01

    Medical technologies are indispensable to modern medicine. However, they have become exceedingly expensive and complex and are not available to the economically disadvantaged majority of the world population in underdeveloped as well as developed parts of the world. For example, according to the World Health Organization about two thirds of the world population does not have access to medical imaging. In this paper we introduce a new medical technology paradigm centered on wireless technology and cloud computing that was designed to overcome the problems of increasing health technology costs. We demonstrate the value of the concept with an example; the design of a wireless, distributed network and central (cloud) computing enabled three-dimensional (3-D) ultrasound system. Specifically, we demonstrate the feasibility of producing a 3-D high end ultrasound scan at a central computing facility using the raw data acquired at the remote patient site with an inexpensive low end ultrasound transducer designed for 2-D, through a mobile device and wireless connection link between them. Producing high-end 3D ultrasound images with simple low-end transducers reduces the cost of imaging by orders of magnitude. It also removes the requirement of having a highly trained imaging expert at the patient site, since the need for hand-eye coordination and the ability to reconstruct a 3-D mental image from 2-D scans, which is a necessity for high quality ultrasound imaging, is eliminated. This could enable relatively untrained medical workers in developing nations to administer imaging and a more accurate diagnosis, effectively saving the lives of people. PMID:19936236

  18. 3D relaxation MHD modeling with FOI-PERFECT code for electromagnetically driven HED systems

    NASA Astrophysics Data System (ADS)

    Wang, Ganghua; Duan, Shuchao; Xie, Weiping; Kan, Mingxian; Institute of Fluid Physics Collaboration

    2015-11-01

    One of the challenges in numerical simulations of electromagnetically driven high energy density (HED) systems is the existence of vacuum region. The electromagnetic part of the conventional model adopts the magnetic diffusion approximation (magnetic induction model). The vacuum region is approximated by artificially increasing the resistivity. On one hand the phase/group velocity is superluminal and hence non-physical in the vacuum region, on the other hand a diffusion equation with large diffusion coefficient can only be solved by implicit scheme. Implicit method is usually difficult to parallelize and converge. A better alternative is to solve the full electromagnetic equations for the electromagnetic part. Maxwell's equations coupled with the constitutive equation, generalized Ohm's law, constitute a relaxation model. The dispersion relation is given to show its transition from electromagnetic propagation in vacuum to resistive MHD in plasma in a natural way. The phase and group velocities are finite for this system. A better time stepping is adopted to give a 3rd full order convergence in time domain without the stiff relaxation term restriction. Therefore it is convenient for explicit & parallel computations. Some numerical results of FOI-PERFECT code are also given. Project supported by the National Natural Science Foundation of China (Grant No. 11172277,11205145).

  19. Simulations of 3D LPI's relevant to IFE using the PIC code OSIRIS

    NASA Astrophysics Data System (ADS)

    Tsung, F. S.; Mori, W. B.; Winjum, B. J.

    2014-10-01

    We will study three dimensional effects of laser plasma instabilities, including backward raman scattering, the high frequency hybrid instability, and the two plasmon instability using OSIRIS in 3D Cartesian geometry and cylindrical 2D OSIRIS with azimuthal mode decompositions. With our new capabilities we hope to demonstrate that we are capable of studying single speckle physics relevant to IFE in an efficent manner.

  20. Finite Element Code For 3D-Hydraulic Fracture Propagation Equations (3-layer).

    1992-03-24

    HYFRACP3D is a finite element program for simulation of a pseudo three-dimensional fracture geometries with a two-dimensional planar solution. The model predicts the height, width and winglength over time for a hydraulic fracture propagating in a three-layered system of rocks with variable rock mechanics properties.

  1. Revisiting the TORT Solutions to the NEA Suite of Benchmarks for 3D Transport Methods and Codes Over a Range in Parameter Space

    SciTech Connect

    Bekar, Kursat B; Azmy, Yousry

    2009-01-01

    Improved TORT solutions to the 3D transport codes' suite of benchmarks exercise are presented in this study. Preliminary TORT solutions to this benchmark indicate that the majority of benchmark quantities for most benchmark cases are computed with good accuracy, and that accuracy improves with model refinement. However, TORT fails to compute accurate results for some benchmark cases with aspect ratios drastically different from 1, possibly due to ray effects. In this work, we employ the standard approach of splitting the solution to the transport equation into an uncollided flux and a fully collided flux via the code sequence GRTUNCL3D and TORT to mitigate ray effects. The results of this code sequence presented in this paper show that the accuracy of most benchmark cases improved substantially. Furthermore, the iterative convergence problems reported for the preliminary TORT solutions have been resolved by bringing the computational cells' aspect ratio closer to unity and, more importantly, by using 64-bit arithmetic precision in the calculation sequence. Results of this study are also reported.

  2. A hybrid method for the computation of quasi-3D seismograms.

    NASA Astrophysics Data System (ADS)

    Masson, Yder; Romanowicz, Barbara

    2013-04-01

    The development of powerful computer clusters and efficient numerical computation methods, such as the Spectral Element Method (SEM) made possible the computation of seismic wave propagation in a heterogeneous 3D earth. However, the cost of theses computations is still problematic for global scale tomography that requires hundreds of such simulations. Part of the ongoing research effort is dedicated to the development of faster modeling methods based on the spectral element method. Capdeville et al. (2002) proposed to couple SEM simulations with normal modes calculation (C-SEM). Nissen-Meyer et al. (2007) used 2D SEM simulations to compute 3D seismograms in a 1D earth model. Thanks to these developments, and for the first time, Lekic et al. (2011) developed a 3D global model of the upper mantle using SEM simulations. At the local and continental scale, adjoint tomography that is using a lot of SEM simulation can be implemented on current computers (Tape, Liu et al. 2009). Due to their smaller size, these models offer higher resolution. They provide us with images of the crust and the upper part of the mantle. In an attempt to teleport such local adjoint tomographic inversions into the deep earth, we are developing a hybrid method where SEM computation are limited to a region of interest within the earth. That region can have an arbitrary shape and size. Outside this region, the seismic wavefield is extrapolated to obtain synthetic data at the Earth's surface. A key feature of the method is the use of a time reversal mirror to inject the wavefield induced by distant seismic source into the region of interest (Robertsson and Chapman 2000). We compute synthetic seismograms as follow: Inside the region of interest, we are using regional spectral element software RegSEM to compute wave propagation in 3D. Outside this region, the wavefield is extrapolated to the surface by convolution with the Green's functions from the mirror to the seismic stations. For now, these

  3. New solutions and applications of 3D computer tomography image processing

    NASA Astrophysics Data System (ADS)

    Effenberger, Ira; Kroll, Julia; Verl, Alexander

    2008-02-01

    As nowadays the industry aims at fast and high quality product development and manufacturing processes a modern and efficient quality inspection is essential. Compared to conventional measurement technologies, industrial computer tomography (CT) is a non-destructive technology for 3D-image data acquisition which helps to overcome their disadvantages by offering the possibility to scan complex parts with all outer and inner geometric features. In this paper new and optimized methods for 3D image processing, including innovative ways of surface reconstruction and automatic geometric feature detection of complex components, are presented, especially our work of developing smart online data processing and data handling methods, with an integrated intelligent online mesh reduction. Hereby the processing of huge and high resolution data sets is guaranteed. Besides, new approaches for surface reconstruction and segmentation based on statistical methods are demonstrated. On the extracted 3D point cloud or surface triangulation automated and precise algorithms for geometric inspection are deployed. All algorithms are applied to different real data sets generated by computer tomography in order to demonstrate the capabilities of the new tools. Since CT is an emerging technology for non-destructive testing and inspection more and more industrial application fields will use and profit from this new technology.

  4. The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.

    PubMed

    Parlea, Lorena G; Sweeney, Blake A; Hosseini-Asanjan, Maryam; Zirbel, Craig L; Leontis, Neocles B

    2016-07-01

    RNA 3D motifs occupy places in structured RNA molecules that correspond to the hairpin, internal and multi-helix junction "loops" of their secondary structure representations. As many as 40% of the nucleotides of an RNA molecule can belong to these structural elements, which are distinct from the regular double helical regions formed by contiguous AU, GC, and GU Watson-Crick basepairs. With the large number of atomic- or near atomic-resolution 3D structures appearing in a steady stream in the PDB/NDB structure databases, the automated identification, extraction, comparison, clustering and visualization of these structural elements presents an opportunity to enhance RNA science. Three broad applications are: (1) identification of modular, autonomous structural units for RNA nanotechnology, nanobiology and synthetic biology applications; (2) bioinformatic analysis to improve RNA 3D structure prediction from sequence; and (3) creation of searchable databases for exploring the binding specificities, structural flexibility, and dynamics of these RNA elements. In this contribution, we review methods developed for computational extraction of hairpin and internal loop motifs from a non-redundant set of high-quality RNA 3D structures. We provide a statistical summary of the extracted hairpin and internal loop motifs in the most recent version of the RNA 3D Motif Atlas. We also explore the reliability and accuracy of the extraction process by examining its performance in clustering recurrent motifs from homologous ribosomal RNA (rRNA) structures. We conclude with a summary of remaining challenges, especially with regard to extraction of multi-helix junction motifs. PMID:27125735

  5. Documentation for computer code NACL

    SciTech Connect

    Weres, O.; Peiper, J.C.; Pitzer, K.S.; Pabalan, R.

    1987-02-01

    The computer program NACL incorporates the empirical model of the thermodynamic properties of the system NaCl-H/sub 2/O recently published by Pitzer et al. NACL is derived from the research codes used by Pitzer et al. to analyze the experimental data and fix the parameters in their model. NACL calculates values for all thermodynamic properties which are identical to values tabulated in Ref. 1. NACL is written in VAX/VMS FORTRAN, and was developed on a VAX 8600 computer. Machine specific features have been avoided, and NACL should require few changes to compile and run with other compilers and computers. A sample output and full code listing of NACL are appended to this document. For one year following the publication of this document, the code will be made available to interested users on 5.25'' floppy diskette in MS-DOS 2.11 format. Please send a formatted diskette and a stamped, self-addressed mailer to Oleh Weres, Lawrence Berkeley Laboratory, 50E, Berkeley, CA 94720. Please put your name and address on the diskette.

  6. A Computational Model for Suspended Large Rigid Bodies in 3D Unsteady Viscous Flows

    NASA Astrophysics Data System (ADS)

    Xiao, Feng

    1999-11-01

    A 3D numerical model for computing large rigid objects suspended in fluid flow has been developed. Rather than calculating the surface pressure upon the solid body, we evaluate the net force and torque based on a volume force formulation. The total effective force is obtained by summing up the forces at the Eulerian grids occupied by the rigid body. The effects of the moving bodies are coupled to the fluid flow by imposing the velocity field of the bodies to the fluid. A Poisson equation is used to compute the pressure over the whole domain. The objects are identified by color functions and calculated by the PPM scheme and a tangent function transformation which scales the transition region of the computed interface to a compact thickness. The model is then implemented on a parallel computer of distributed memory and validated with Stokes and low Reynolds number flows.

  7. Analysis and Compensation for Lateral Chromatic Aberration in a Color Coding Structured Light 3D Measurement System.

    PubMed

    Huang, Junhui; Xue, Qi; Wang, Zhao; Gao, Jianmin

    2016-01-01

    While color-coding methods have improved the measuring efficiency of a structured light three-dimensional (3D) measurement system, they decreased the measuring accuracy significantly due to lateral chromatic aberration (LCA). In this study, the LCA in a structured light measurement system is analyzed, and a method is proposed to compensate the error caused by the LCA. Firstly, based on the projective transformation, a 3D error map of LCA is constructed in the projector images by using a flat board and comparing the image coordinates of red, green and blue circles with the coordinates of white circles at preselected sample points within the measurement volume. The 3D map consists of the errors, which are the equivalent errors caused by LCA of the camera and projector. Then in measurements, error values of LCA are calculated and compensated to correct the projector image coordinates through the 3D error map and a tri-linear interpolation method. Eventually, 3D coordinates with higher accuracy are re-calculated according to the compensated image coordinates. The effectiveness of the proposed method is verified in the following experiments. PMID:27598174

  8. Parallel Adaptive Computation of Blood Flow in a 3D ``Whole'' Body Model

    NASA Astrophysics Data System (ADS)

    Zhou, M.; Figueroa, C. A.; Taylor, C. A.; Sahni, O.; Jansen, K. E.

    2008-11-01

    Accurate numerical simulations of vascular trauma require the consideration of a larger portion of the vasculature than previously considered, due to the systemic nature of the human body's response. A patient-specific 3D model composed of 78 connected arterial branches extending from the neck to the lower legs is constructed to effectively represent the entire body. Recently developed outflow boundary conditions that appropriately represent the downstream vasculature bed which is not included in the 3D computational domain are applied at 78 outlets. In this work, the pulsatile blood flow simulations are started on a fairly uniform, unstructured mesh that is subsequently adapted using a solution-based approach to efficiently resolve the flow features. The adapted mesh contains non-uniform, anisotropic elements resulting in resolution that conforms with the physical length scales present in the problem. The effects of the mesh resolution on the flow field are studied, specifically on relevant quantities of pressure, velocity and wall shear stress.

  9. Computational radiology and imaging with the MCNP Monte Carlo code

    SciTech Connect

    Estes, G.P.; Taylor, W.M.

    1995-05-01

    MCNP, a 3D coupled neutron/photon/electron Monte Carlo radiation transport code, is currently used in medical applications such as cancer radiation treatment planning, interpretation of diagnostic radiation images, and treatment beam optimization. This paper will discuss MCNP`s current uses and capabilities, as well as envisioned improvements that would further enhance MCNP role in computational medicine. It will be demonstrated that the methodology exists to simulate medical images (e.g. SPECT). Techniques will be discussed that would enable the construction of 3D computational geometry models of individual patients for use in patient-specific studies that would improve the quality of care for patients.

  10. Implementation of a 3D halo neutral model in the TRANSP code and application to projected NSTX-U plasmas

    NASA Astrophysics Data System (ADS)

    Medley, S. S.; Liu, D.; Gorelenkova, M. V.; Heidbrink, W. W.; Stagner, L.

    2016-02-01

    A 3D halo neutral code developed at the Princeton Plasma Physics Laboratory and implemented for analysis using the TRANSP code is applied to projected National Spherical Torus eXperiment-Upgrade (NSTX-U plasmas). The legacy TRANSP code did not handle halo neutrals properly since they were distributed over the plasma volume rather than remaining in the vicinity of the neutral beam footprint as is actually the case. The 3D halo neutral code uses a ‘beam-in-a-box’ model that encompasses both injected beam neutrals and resulting halo neutrals. Upon deposition by charge exchange, a subset of the full, one-half and one-third beam energy components produce first generation halo neutrals that are tracked through successive generations until an ionization event occurs or the descendant halos exit the box. The 3D halo neutral model and neutral particle analyzer (NPA) simulator in the TRANSP code have been benchmarked with the Fast-Ion D-Alpha simulation (FIDAsim) code, which provides Monte Carlo simulations of beam neutral injection, attenuation, halo generation, halo spatial diffusion, and photoemission processes. When using the same atomic physics database, TRANSP and FIDAsim simulations achieve excellent agreement on the spatial profile and magnitude of beam and halo neutral densities and the NPA energy spectrum. The simulations show that the halo neutral density can be comparable to the beam neutral density. These halo neutrals can double the NPA flux, but they have minor effects on the NPA energy spectrum shape. The TRANSP and FIDAsim simulations also suggest that the magnitudes of beam and halo neutral densities are relatively sensitive to the choice of the atomic physics databases.

  11. Assessment of 3D Codes for Predicting Liner Attenuation in Flow Ducts

    NASA Technical Reports Server (NTRS)

    Watson, W. R.; Nark, D. M.; Jones, M. G.

    2008-01-01

    This paper presents comparisons of seven propagation codes for predicting liner attenuation in ducts with flow. The selected codes span the spectrum of methods available (finite element, parabolic approximation, and pseudo-time domain) and are collectively representative of the state-of-art in the liner industry. These codes are included because they have two-dimensional and three-dimensional versions and can be exported to NASA's Columbia Supercomputer. The basic assumptions, governing differential equations, boundary conditions, and numerical methods underlying each code are briefly reviewed and an assessment is performed based on two predefined metrics. The two metrics used in the assessment are the accuracy of the predicted attenuation and the amount of wall clock time to predict the attenuation. The assessment is performed over a range of frequencies, mean flow rates, and grazing flow liner impedances commonly used in the liner industry. The primary conclusions of the study are (1) predicted attenuations are in good agreement for rigid wall ducts, (2) the majority of codes compare well to each other and to approximate results from mode theory for soft wall ducts, (3) most codes compare well to measured data on a statistical basis, (4) only the finite element codes with cubic Hermite polynomials capture extremely large attenuations, and (5) wall clock time increases by an order of magnitude or more are observed for a three-dimensional code relative to the corresponding two-dimensional version of the same code.

  12. European Pressurized water Reactor (EPR) SAR ATWS Accident Analyses by using 3D Code Internal Coupling Method

    SciTech Connect

    Gagner, Renata; Lafitte, Helene; Dormeau, Pascal; Stoudt, Roger H.

    2004-07-01

    Anticipated Transients Without Scram (ATWS) accident analyses make part of the Safety Analysis Report of the European Pressurized water Reactor (EPR), covering Risk Reduction Category A (Core Melt Prevention) events. This paper deals with three of the most penalizing RRC-A sequences of ATWS caused by mechanical blockage of the control/shutdown rods, regarding their consequences on the Reactor Coolant System (RCS) and core integrity. A new 3D code internal coupling calculation method has been introduced. (authors)

  13. Development of a Top-View Numeric Coding Teaching-Learning Trajectory within an Elementary Grades 3-D Visualization Design Research Project

    ERIC Educational Resources Information Center

    Sack, Jacqueline J.

    2013-01-01

    This article explicates the development of top-view numeric coding of 3-D cube structures within a design research project focused on 3-D visualization skills for elementary grades children. It describes children's conceptual development of 3-D cube structures using concrete models, conventional 2-D pictures and abstract top-view numeric…

  14. TART98 a coupled neutron-photon 3-D, combinatorial geometry time dependent Monte Carlo Transport code

    SciTech Connect

    Cullen, D E

    1998-11-22

    TART98 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo radiation transport code. This code can run on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART98 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART98 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART98 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART98 and its data files.

  15. 3D Hydrodynamic Simulations with Yguazú-A Code to Model a Jet in a Galaxy Cluster

    NASA Astrophysics Data System (ADS)

    Haro-Corzo, S. A. R.; Velazquez, P.; Diaz, A.

    2009-05-01

    We present preliminary results for a galaxy's jet expanding into an intra-cluster medium (ICM). We attempt to model the jet-gas interaction and the evolution of a extragalactic collimated jet placed at center of computational grid, which it is modeled as a cylinder ejecting gas in the z-axis direction with fixed velocity. It has precession motion around z-axis (period of 10^5 sec.) and orbital motion in XY-plane (period of 500 yr.). This jet is embedded in the ICM, which is modeled as surrounding wind in the XZ plane. We carried out 3D hydrodynamical simulations using Yguazú-A code. This simulation do not include radiative losses. In order to compare the numerical results with observations, we generated synthetic X-ray emission images. X-ray observations with high-resolution of rich cluster of galaxies show diffuse emission with filamentary structure (sometimes called as cooling flow or X-ray filament). Radio observations show a jet-like emission of the central region of the cluster. Joining these observations, in this work we explore the possibility that the jet-ambient gas interaction leads to a filamentary morphology in the X-ray domain. We have found that simulation considering orbital motion offers the possibility to explain the diffuse emission observed in the X-ray domain. The circular orbital motion, additional to precession motion, contribute to disperse the shocked gas and the X-ray appearance of the 3D simulation reproduce some important details of Abel 1795 X-ray emission (Rodriguez-Martinez et al. 2006, A&A, 448, 15): A bright bow-shock at north (spot), where interact directly the jet and the ICM and which is observed in the X-ray image. Meanwhile, in the south side there is no bow-shock X-ray emission, but the wake appears as a X-ray source. This wake is part of the diffuse shocked ambient gas region.

  16. 3D high-efficiency video coding for multi-view video and depth data.

    PubMed

    Muller, Karsten; Schwarz, Heiko; Marpe, Detlev; Bartnik, Christian; Bosse, Sebastian; Brust, Heribert; Hinz, Tobias; Lakshman, Haricharan; Merkle, Philipp; Rhee, Franz Hunn; Tech, Gerhard; Winken, Martin; Wiegand, Thomas

    2013-09-01

    This paper describes an extension of the high efficiency video coding (HEVC) standard for coding of multi-view video and depth data. In addition to the known concept of disparity-compensated prediction, inter-view motion parameter, and inter-view residual prediction for coding of the dependent video views are developed and integrated. Furthermore, for depth coding, new intra coding modes, a modified motion compensation and motion vector coding as well as the concept of motion parameter inheritance are part of the HEVC extension. A novel encoder control uses view synthesis optimization, which guarantees that high quality intermediate views can be generated based on the decoded data. The bitstream format supports the extraction of partial bitstreams, so that conventional 2D video, stereo video, and the full multi-view video plus depth format can be decoded from a single bitstream. Objective and subjective results are presented, demonstrating that the proposed approach provides 50% bit rate savings in comparison with HEVC simulcast and 20% in comparison with a straightforward multi-view extension of HEVC without the newly developed coding tools. PMID:23715605

  17. Computational Analysis of the Transonic Dynamics Tunnel Using FUN3D

    NASA Technical Reports Server (NTRS)

    Chwalowski, Pawel; Quon, Eliot; Brynildsen, Scott E.

    2016-01-01

    This paper presents results from an exploratory two-year effort of applying Computational Fluid Dynamics (CFD) to analyze the empty-tunnel flow in the NASA Langley Research Center Transonic Dynamics Tunnel (TDT). The TDT is a continuous-flow, closed circuit, 16- x 16-foot slotted-test-section wind tunnel, with capabilities to use air or heavy gas as a working fluid. In this study, experimental data acquired in the empty tunnel using the R-134a test medium was used to calibrate the computational data. The experimental calibration data includes wall pressures, boundary-layer profiles, and the tunnel centerline Mach number profiles. Subsonic and supersonic flow regimes were considered, focusing on Mach 0.5, 0.7 and Mach 1.1 in the TDT test section. This study discusses the computational domain, boundary conditions, and initial conditions selected and the resulting steady-state analyses using NASA's FUN3D CFD software.

  18. 3D object optonumerical acquisition methods for CAD/CAM and computer graphics systems

    NASA Astrophysics Data System (ADS)

    Sitnik, Robert; Kujawinska, Malgorzata; Pawlowski, Michal E.; Woznicki, Jerzy M.

    1999-08-01

    The creation of a virtual object for CAD/CAM and computer graphics on the base of data gathered by full-field optical measurement of 3D object is presented. The experimental co- ordinates are alternatively obtained by combined fringe projection/photogrammetry based system or fringe projection/virtual markers setup. The new and fully automatic procedure which process the cloud of measured points into triangular mesh accepted by CAD/CAM and computer graphics systems is presented. Its applicability for various classes of objects is tested including the error analysis of virtual objects generated. The usefulness of the method is proved by applying the virtual object in rapid prototyping system and in computer graphics environment.

  19. Development of computer program NAS3D using Vector processing for geometric nonlinear analysis of structures

    NASA Technical Reports Server (NTRS)

    Mangalgiri, P. D.; Prabhakaran, R.

    1986-01-01

    An algorithm for vectorized computation of stiffness matrices of an 8 noded isoparametric hexahedron element for geometric nonlinear analysis was developed. This was used in conjunction with the earlier 2-D program GAMNAS to develop the new program NAS3D for geometric nonlinear analysis. A conventional, modified Newton-Raphson process is used for the nonlinear analysis. New schemes for the computation of stiffness and strain energy release rates is presented. The organization the program is explained and some results on four sample problems are given. The study of CPU times showed that savings by a factor of 11 to 13 were achieved when vectorized computation was used for the stiffness instead of the conventional scalar one. Finally, the scheme of inputting data is explained.

  20. 3D cephalometric analysis obtained from computed tomography. Review of the literature

    PubMed Central

    Rossini, Giulia; Cavallini, Costanza; Cassetta, Michele; Barbato, Ersilia

    2012-01-01

    Summary Introduction The aim of this systematic review is to estimate accuracy and reproducibility of craniometric measurements and reliability of landmarks identified with computed tomography (CT) techniques in 3D cephalometric analysis. Methods Computerized and manual searches were conducted up to 2011 for studies that addressed these objectives. The selection criteria were: (1) the use of human specimen; (2) the comparison between 2D and 3D cephalometric analysis; (3) the assessment of accuracy, reproducibility of measurements and reliability of landmark identification with CT images compared with two-dimensional conventional radiographs. The Cochrane Handbook for Systematic Reviews of Interventions was used as the guideline for this article. Results Twenty-seven articles met the inclusion criteria. Most of them demonstrated high measurements accuracy and reproducibility, and landmarks reliability, but their cephalometric analysis methodology varied widely. Conclusion These differencies among the studies in making measurements don’t permit a direct comparison between them. The future developments in the knowledge of these techniques should provide a standardized method to conduct the 3D CT cephalometric analysis. PMID:22545187

  1. Registration of 3D ultrasound computer tomography and MRI for evaluation of tissue correspondences

    NASA Astrophysics Data System (ADS)

    Hopp, T.; Dapp, R.; Zapf, M.; Kretzek, E.; Gemmeke, H.; Ruiter, N. V.

    2015-03-01

    3D Ultrasound Computer Tomography (USCT) is a new imaging method for breast cancer diagnosis. In the current state of development it is essential to correlate USCT with a known imaging modality like MRI to evaluate how different tissue types are depicted. Due to different imaging conditions, e.g. with the breast subject to buoyancy in USCT, a direct correlation is demanding. We present a 3D image registration method to reduce positioning differences and allow direct side-by-side comparison of USCT and MRI volumes. It is based on a two-step approach including a buoyancy simulation with a biomechanical model and free form deformations using cubic B-Splines for a surface refinement. Simulation parameters are optimized patient-specifically in a simulated annealing scheme. The method was evaluated with in-vivo datasets resulting in an average registration error below 5mm. Correlating tissue structures can thereby be located in the same or nearby slices in both modalities and three-dimensional non-linear deformations due to the buoyancy are reduced. Image fusion of MRI volumes and USCT sound speed volumes was performed for intuitive display. By applying the registration to data of our first in-vivo study with the KIT 3D USCT, we could correlate several tissue structures in MRI and USCT images and learn how connective tissue, carcinomas and breast implants observed in the MRI are depicted in the USCT imaging modes.

  2. First direct 3D visualisation of microstructural evolutions during sintering through X-ray computed microtomography

    SciTech Connect

    Bernard, Dominique . E-mail: bernard@icmcb.u-bordeaux.fr; Gendron, Damien; Heintz, Jean-Marc; Bordere, Sylvie; Etourneau, Jean

    2005-01-03

    X-ray computed microtomography (XCMT) has been applied to ceramic samples of different materials to visualise, for the first time at this scale, real 3D microstructural evolutions during sintering. Using this technique, it has been possible to follow the whole sintering process of the same grains set. Two materials have been studied; a glass powder heat treated at 700 deg. C and a crystallised lithium borate (Li{sub 6}Gd(BO{sub 3}){sub 3}) powder heat treated at 720 deg. C. XCMT measurements have been done after different sintering times. For each material, a sub-volume was individualised and localised on the successive recordings and its 3D images numerically reconstructed. Description of the three-dimensional microstructures evolution is proposed. From the 3D experimental data, quantitative evolutions of parameters such as porosity and neck size are presented for the glass sample. Possibilities offered by this technique to study complex sintering processes, as for lithium borate, are illustrated.

  3. Traveltime computation and imaging from rugged topography in 3D TTI media

    NASA Astrophysics Data System (ADS)

    Liu, Shaoyong; Wang, Huazhong; Yang, Qinyong; Fang, Wubao

    2014-02-01

    Foothill areas with rugged topography are of great potential for oil and gas seismic exploration, but subsurface imaging in these areas is very challenging. Seismic acquisition with larger offset and wider azimuth is necessary for seismic imaging in complex areas. However, the scale anisotropy in this case must be taken into account. To generalize the pre-stack depth migration (PSDM) to 3D transversely isotropic media with vertical symmetry axes (VTI) and tilted symmetry axes (TTI) from rugged topography, a new dynamic programming approach for the first-arrival traveltime computation method is proposed. The first-arrival time on every uniform mesh point is calculated based on Fermat's principle with simple calculus techniques and a systematic mapping scheme. In order to calculate the minimum traveltime, a set of nonlinear equations is solved on each mesh point, where the group velocity is determined by the group angle. Based on the new first-arrival time calculation method, the corresponding PSDM and migration velocity analysis workflow for 3D anisotropic media from rugged surface is developed. Numerical tests demonstrate that the proposed traveltime calculation method is effective in both VTI and TTI media. The migration results for 3D field data show that it is necessary to choose a smooth datum to remove the high wavenumber move-out components for PSDM with rugged topography and take anisotropy into account to achieve better images.

  4. Hybrid system of optics and computer for 3-D object recognition

    NASA Astrophysics Data System (ADS)

    Li, Qun Z.; Miao, Peng C.; He, Anzhi

    1992-03-01

    In this paper, a hybrid system of optics and computer for 3D object recognition is presented. The system consists of a Twyman-Green interferometer, a He-Ne laser, a computer, a TV camera, and an image processor. The structured light produced by a Twyman-Green interferometer is split in and illuminates objects in two directions at the same time. Moire contour is formed on the surface of object. In order to delete unwanted patterns in moire contour, we don't utilize the moire contour on the surface of object. We place a TV camera in the middle of the angle between two illuminating directions and take two groups of deformed fringes on the surface of objects. Two groups of deformed fringes are processed using the digital image processing system controlled and operated by XOR logic in the computer, moire fringes are then extracted from the complicated environment. 3D coordinates of points of the object are obtained after moire fringe is followed, and points belonging to the same fringe are given the same altitude. The object is described by its projected drawings in three coordinate planes. The projected drawings in three coordinate planes of the known objects are stored in the library of judgment. The object can be recognized by inquiring the library of judgment.

  5. Radial subsampling for fast cost function computation in intensity-based 3D image registration

    NASA Astrophysics Data System (ADS)

    Boettger, Thomas; Wolf, Ivo; Meinzer, Hans-Peter; Celi, Juan Carlos

    2007-03-01

    Image registration is always a trade-off between accuracy and speed. Looking towards clinical scenarios the time for bringing two or more images into registration should be around a few seconds only. We present a new scheme for subsampling 3D-image data to allow for efficient computation of cost functions in intensity-based image registration. Starting from an arbitrary center point voxels are sampled along scan lines which do radially extend from the center point. We analyzed the characteristics of different cost functions computed on the sub-sampled data and compared them to known cost functions with respect to local optima. Results show the cost functions are smooth and give high peaks at the expected optima. Furthermore we investigated capture range of cost functions computed under the new subsampling scheme. Capture range was remarkably better for the new scheme compared to metrics using all voxels or different subsampling schemes and high registration accuracy was achieved as well. The most important result is the improvement in terms of speed making this scheme very interesting for clinical scenarios. We conclude using the new subsampling scheme intensity-based 3D image registration can be performed much faster than using other approaches while maintaining high accuracy. A variety of different extensions of the new approach is conceivable, e.g. non-regular distribution of the scan lines or not to let the scan lines start from a center point only, but from the surface of an organ model for example.

  6. Validation of the RPLUS3D Code for Supersonic Inlet Applications Involving Three-Dimensional Shock Wave-Boundary Layer Interactions

    NASA Technical Reports Server (NTRS)

    Kapoor, Kamlesh; Anderson, Bernhard H.; Shaw, Robert J.

    1994-01-01

    A three-dimensional computational fluid dynamics code, RPLUS3D, which was developed for the reactive propulsive flows of ramjets and scramjets, was validated for glancing shock wave-boundary layer interactions. Both laminar and turbulent flows were studied. A supersonic flow over a wedge mounted on a flat plate was numerically simulated. For the laminar case, the static pressure distribution, velocity vectors, and particle traces on the flat plate were obtained. For turbulent flow, both the Baldwin-Lomax and Chien two-equation turbulent models were used. The static pressure distributions, pitot pressure, and yaw angle profiles were computed. In addition, the velocity vectors and particle traces on the flat plate were also obtained from the computed solution. Overall, the computed results for both laminar and turbulent cases compared very well with the experimentally obtained data.

  7. Topological evolutionary computing in the optimal design of 2D and 3D structures

    NASA Astrophysics Data System (ADS)

    Burczynski, T.; Poteralski, A.; Szczepanik, M.

    2007-10-01

    An application of evolutionary algorithms and the finite-element method to the topology optimization of 2D structures (plane stress, bending plates, and shells) and 3D structures is described. The basis of the topological evolutionary optimization is the direct control of the density material distribution (or thickness for 2D structures) by the evolutionary algorithm. The structures are optimized for stress, mass, and compliance criteria. The numerical examples demonstrate that this method is an effective technique for solving problems in computer-aided optimal design.

  8. Computing 3-D steady supersonic flow via a new Lagrangian approach

    NASA Technical Reports Server (NTRS)

    Loh, C. Y.; Liou, M.-S.

    1993-01-01

    The new Lagrangian method introduced by Loh and Hui (1990) is extended for 3-D steady supersonic flow computation. Details of the conservation form, the implementation of the local Riemann solver, and the Godunov and the high resolution TVD schemes are presented. The new approach is robust yet accurate, capable of handling complicated geometry and reactions between discontinuous waves. It keeps all the advantages claimed in the 2-D method of Loh and Hui, e.g., crisp resolution for a slip surface (contact discontinuity) and automatic grid generation along the stream.

  9. Implementation and validation of a Reynolds stress model in the COMMIX-1C/RSM and CAPS-3D/RSM codes

    SciTech Connect

    Chang, F.C.; Bottoni, M.

    1995-08-01

    A Reynolds stress model (RSM) of turbulence, based on seven transport equations, has been linked to the COMMIX-1C/RSM and CAPS-3D/RSM computer codes. Six of the equations model the transport of the components of the Reynolds stress tensor and the seventh models the dissipation of turbulent kinetic energy. When a fluid is heated, four additional transport equations are used: three for the turbulent heat fluxes and one for the variance of temperature fluctuations. All of the analytical and numerical details of the implementation of the new turbulence model are documented. The model was verified by simulation of homogeneous turbulence.

  10. Ultrafast vectorized multispin coding algorithm for the Monte Carlo simulation of the 3D Ising model

    NASA Astrophysics Data System (ADS)

    Wansleben, Stephan

    1987-02-01

    A new Monte Carlo algorithm for the 3D Ising model and its implementation on a CDC CYBER 205 is presented. This approach is applicable to lattices with sizes between 3·3·3 and 192·192·192 with periodic boundary conditions, and is adjustable to various kinetic models. It simulates a canonical ensemble at given temperature generating a new random number for each spin flip. For the Metropolis transition probability the speed is 27 ns per updates on a two-pipe CDC Cyber 205 with 2 million words physical memory, i.e. 1.35 times the cycle time per update or 38 million updates per second.

  11. Fullwave coupling to a 3D antenna code using Green's function formulation of wave-particle response.

    NASA Astrophysics Data System (ADS)

    Wright, John; Bonoli, Paul; Brambilla, Marco; Lancelloti, Vito; Maggiora, Riccardo; Carter, Mark

    2006-04-01

    Using the fullwave code, TORIC ,and the 3D antenna code, TOPICA, we construct a complete linear system for the RF driven plasma. The 3D finite element antenna code, TOPICA, requires an admittance, Y, for the plasma, where B=YE. In this work TORIC was modified to allow excitation of the (Eη, Eζ) electric field components at the plasma surface, corresponding to a single poloidal and toroidal mode number combination (m,n). This leads the tensor response: Y=( *20c Yηη & Yηζ Yζη & Yζζ ), where each of the Yn submatrices is Nm in size. It is shown that the admittance matrix is equivalent to a Greens function calculation for the fullwave system and in addition, the net work done in the calculation is on the order of twice a single fullwave calculation. After the admittance calculation is done, the response of a plasma to an antenna driven at a given frequency can be calculated by only running the TOPICA code for a new antenna geometry. In tests of loading, TOPICA has been able reproduce loading of the Alcator D antenna (S12 coefficient accurately.).

  12. Validation of Numerical Codes to Compute Tsunami Runup And Inundation

    NASA Astrophysics Data System (ADS)

    Velioğlu, Deniz; Cevdet Yalçıner, Ahmet; Kian, Rozita; Zaytsev, Andrey

    2015-04-01

    FLOW 3D and NAMI DANCE are two numerical codes which can be applied to analysis of flow and motion of long waves. Flow 3D simulates linear and nonlinear propagating surface waves as well as irregular waves including long waves. NAMI DANCE uses finite difference computational method to solve nonlinear shallow water equations (NSWE) in long wave problems, specifically tsunamis. Both codes can be applied to tsunami simulations and visualization of long waves. Both codes are capable of solving flooding problems. However, FLOW 3D is designed mainly to solve flooding problem from land and NAMI DANCE is designed to solve flooding problem from the sea. These numerical codes are applied to some benchmark problems for validation and verification. One useful benchmark problem is the runup of solitary waves which is investigated analytically and experimentally by Synolakis (1987). Since 1970s, solitary waves have commonly been used to model tsunamis especially in experimental and numerical studies. In this respect, a benchmark problem on runup of solitary waves is a relevant choice to assess the capability and validity of the numerical codes on amplification of tsunamis. In this study both codes have been tested, compared and validated by applying to the analytical benchmark problem of solitary wave runup on a sloping beach. Comparison of the results showed that both codes are in good agreement with the analytical and experimental results and thus can be proposed to be used in inundation of long waves and tsunami hazard analysis.

  13. "Let's get physical": advantages of a physical model over 3D computer models and textbooks in learning imaging anatomy.

    PubMed

    Preece, Daniel; Williams, Sarah B; Lam, Richard; Weller, Renate

    2013-01-01

    Three-dimensional (3D) information plays an important part in medical and veterinary education. Appreciating complex 3D spatial relationships requires a strong foundational understanding of anatomy and mental 3D visualization skills. Novel learning resources have been introduced to anatomy training to achieve this. Objective evaluation of their comparative efficacies remains scarce in the literature. This study developed and evaluated the use of a physical model in demonstrating the complex spatial relationships of the equine foot. It was hypothesized that the newly developed physical model would be more effective for students to learn magnetic resonance imaging (MRI) anatomy of the foot than textbooks or computer-based 3D models. Third year veterinary medicine students were randomly assigned to one of three teaching aid groups (physical model; textbooks; 3D computer model). The comparative efficacies of the three teaching aids were assessed through students' abilities to identify anatomical structures on MR images. Overall mean MRI assessment scores were significantly higher in students utilizing the physical model (86.39%) compared with students using textbooks (62.61%) and the 3D computer model (63.68%) (P < 0.001), with no significant difference between the textbook and 3D computer model groups (P = 0.685). Student feedback was also more positive in the physical model group compared with both the textbook and 3D computer model groups. Our results suggest that physical models may hold a significant advantage over alternative learning resources in enhancing visuospatial and 3D understanding of complex anatomical architecture, and that 3D computer models have significant limitations with regards to 3D learning. PMID:23349117

  14. Fdf in US3D

    NASA Astrophysics Data System (ADS)

    Otis, Collin; Ferrero, Pietro; Candler, Graham; Givi, Peyman

    2013-11-01

    The scalar filtered mass density function (SFMDF) methodology is implemented into the computer code US3D. This is an unstructured Eulerian finite volume hydrodynamic solver and has proven very effective for simulation of compressible turbulent flows. The resulting SFMDF-US3D code is employed for large eddy simulation (LES) on unstructured meshes. Simulations are conducted of subsonic and supersonic flows under non-reacting and reacting conditions. The consistency and the accuracy of the simulated results are assessed along with appraisal of the overall performance of the methodology. The SFMDF-US3D is now capable of simulating high speed flows in complex configurations.

  15. 3D virtual human atria: A computational platform for studying clinical atrial fibrillation.

    PubMed

    Aslanidi, Oleg V; Colman, Michael A; Stott, Jonathan; Dobrzynski, Halina; Boyett, Mark R; Holden, Arun V; Zhang, Henggui

    2011-10-01

    Despite a vast amount of experimental and clinical data on the underlying ionic, cellular and tissue substrates, the mechanisms of common atrial arrhythmias (such as atrial fibrillation, AF) arising from the functional interactions at the whole atria level remain unclear. Computational modelling provides a quantitative framework for integrating such multi-scale data and understanding the arrhythmogenic behaviour that emerges from the collective spatio-temporal dynamics in all parts of the heart. In this study, we have developed a multi-scale hierarchy of biophysically detailed computational models for the human atria--the 3D virtual human atria. Primarily, diffusion tensor MRI reconstruction of the tissue geometry and fibre orientation in the human sinoatrial node (SAN) and surrounding atrial muscle was integrated into the 3D model of the whole atria dissected from the Visible Human dataset. The anatomical models were combined with the heterogeneous atrial action potential (AP) models, and used to simulate the AP conduction in the human atria under various conditions: SAN pacemaking and atrial activation in the normal rhythm, break-down of regular AP wave-fronts during rapid atrial pacing, and the genesis of multiple re-entrant wavelets characteristic of AF. Contributions of different properties of the tissue to mechanisms of the normal rhythm and arrhythmogenesis were investigated. Primarily, the simulations showed that tissue heterogeneity caused the break-down of the normal AP wave-fronts at rapid pacing rates, which initiated a pair of re-entrant spiral waves; and tissue anisotropy resulted in a further break-down of the spiral waves into multiple meandering wavelets characteristic of AF. The 3D virtual atria model itself was incorporated into the torso model to simulate the body surface ECG patterns in the normal and arrhythmic conditions. Therefore, a state-of-the-art computational platform has been developed, which can be used for studying multi

  16. 3D modeling method for computer animate based on modified weak structured light method

    NASA Astrophysics Data System (ADS)

    Xiong, Hanwei; Pan, Ming; Zhang, Xiangwei

    2010-11-01

    A simple and affordable 3D scanner is designed in this paper. Three-dimensional digital models are playing an increasingly important role in many fields, such as computer animate, industrial design, artistic design and heritage conservation. For many complex shapes, optical measurement systems are indispensable to acquiring the 3D information. In the field of computer animate, such an optical measurement device is too expensive to be widely adopted, and on the other hand, the precision is not as critical a factor in that situation. In this paper, a new cheap 3D measurement system is implemented based on modified weak structured light, using only a video camera, a light source and a straight stick rotating on a fixed axis. For an ordinary weak structured light configuration, one or two reference planes are required, and the shadows on these planes must be tracked in the scanning process, which destroy the convenience of this method. In the modified system, reference planes are unnecessary, and size range of the scanned objects is expanded widely. A new calibration procedure is also realized for the proposed method, and points cloud is obtained by analyzing the shadow strips on the object. A two-stage ICP algorithm is used to merge the points cloud from different viewpoints to get a full description of the object, and after a series of operations, a NURBS surface model is generated in the end. A complex toy bear is used to verify the efficiency of the method, and errors range from 0.7783mm to 1.4326mm comparing with the ground truth measurement.

  17. Automatic pulmonary vessel segmentation in 3D computed tomographic pulmonary angiographic (CTPA) images

    NASA Astrophysics Data System (ADS)

    Zhou, Chuan; Chan, Heang-Ping; Hadjiiski, Lubomir M.; Patel, Smita; Cascade, Philip N.; Sahiner, Berkman; Wei, Jun; Ge, Jun; Kazerooni, Ella A.

    2006-03-01

    Automatic and accurate segmentation of the pulmonary vessels in 3D computed tomographic angiographic images (CTPA) is an essential step for computerized detection of pulmonary embolism (PE) because PEs only occur inside the pulmonary arteries. We are developing an automated method to segment the pulmonary vessels in 3D CTPA images. The lung region is first extracted using thresholding and morphological operations. 3D multiscale filters in combination with a newly developed response function derived from the eigenvalues of Hessian matrices are used to enhance all vascular structures including the vessel bifurcations and suppress non-vessel structures such as the lymphoid tissues surrounding the vessels. At each scale, a volume of interest (VOI) containing the response function value at each voxel is defined. The voxels with a high response indicate that there is an enhanced vessel whose size matches the given filter scale. A hierarchical expectation-maximization (EM) estimation is then applied to the VOI to segment the vessel by extracting the high response voxels at this single scale. The vessel tree is finally reconstructed by combining the segmented vessels at all scales based on a "connected component" analysis. Two experienced thoracic radiologists provided the gold standard of pulmonary arteries by manually tracking the arterial tree and marking the center of the vessels using a computer graphical user interface. Two CTPA cases containing PEs were used to evaluate the performance. One of these two cases also contained other lung diseases. The accuracy of vessel tree segmentation was evaluated by the percentage of the "gold standard" vessel center points overlapping with the segmented vessels. The result shows that 97.3% (1868/1920) and 92.0% (2277/2476) of the manually marked center points overlapped with the segmented vessels for the cases without and with other lung disease, respectively. The results demonstrate that vessel segmentation using our method is

  18. Quick, Accurate, Smart: 3D Computer Vision Technology Helps Assessing Confined Animals’ Behaviour

    PubMed Central

    Calderara, Simone; Pistocchi, Simone; Cucchiara, Rita; Podaliri-Vulpiani, Michele; Messori, Stefano; Ferri, Nicola

    2016-01-01

    Mankind directly controls the environment and lifestyles of several domestic species for purposes ranging from production and research to conservation and companionship. These environments and lifestyles may not offer these animals the best quality of life. Behaviour is a direct reflection of how the animal is coping with its environment. Behavioural indicators are thus among the preferred parameters to assess welfare. However, behavioural recording (usually from video) can be very time consuming and the accuracy and reliability of the output rely on the experience and background of the observers. The outburst of new video technology and computer image processing gives the basis for promising solutions. In this pilot study, we present a new prototype software able to automatically infer the behaviour of dogs housed in kennels from 3D visual data and through structured machine learning frameworks. Depth information acquired through 3D features, body part detection and training are the key elements that allow the machine to recognise postures, trajectories inside the kennel and patterns of movement that can be later labelled at convenience. The main innovation of the software is its ability to automatically cluster frequently observed temporal patterns of movement without any pre-set ethogram. Conversely, when common patterns are defined through training, a deviation from normal behaviour in time or between individuals could be assessed. The software accuracy in correctly detecting the dogs’ behaviour was checked through a validation process. An automatic behaviour recognition system, independent from human subjectivity, could add scientific knowledge on animals’ quality of life in confinement as well as saving time and resources. This 3D framework was designed to be invariant to the dog’s shape and size and could be extended to farm, laboratory and zoo quadrupeds in artificial housing. The computer vision technique applied to this software is innovative in non

  19. Quick, Accurate, Smart: 3D Computer Vision Technology Helps Assessing Confined Animals' Behaviour.

    PubMed

    Barnard, Shanis; Calderara, Simone; Pistocchi, Simone; Cucchiara, Rita; Podaliri-Vulpiani, Michele; Messori, Stefano; Ferri, Nicola

    2016-01-01

    Mankind directly controls the environment and lifestyles of several domestic species for purposes ranging from production and research to conservation and companionship. These environments and lifestyles may not offer these animals the best quality of life. Behaviour is a direct reflection of how the animal is coping with its environment. Behavioural indicators are thus among the preferred parameters to assess welfare. However, behavioural recording (usually from video) can be very time consuming and the accuracy and reliability of the output rely on the experience and background of the observers. The outburst of new video technology and computer image processing gives the basis for promising solutions. In this pilot study, we present a new prototype software able to automatically infer the behaviour of dogs housed in kennels from 3D visual data and through structured machine learning frameworks. Depth information acquired through 3D features, body part detection and training are the key elements that allow the machine to recognise postures, trajectories inside the kennel and patterns of movement that can be later labelled at convenience. The main innovation of the software is its ability to automatically cluster frequently observed temporal patterns of movement without any pre-set ethogram. Conversely, when common patterns are defined through training, a deviation from normal behaviour in time or between individuals could be assessed. The software accuracy in correctly detecting the dogs' behaviour was checked through a validation process. An automatic behaviour recognition system, independent from human subjectivity, could add scientific knowledge on animals' quality of life in confinement as well as saving time and resources. This 3D framework was designed to be invariant to the dog's shape and size and could be extended to farm, laboratory and zoo quadrupeds in artificial housing. The computer vision technique applied to this software is innovative in non

  20. 3-D kinetics simulations of the NRU reactor using the DONJON code

    SciTech Connect

    Leung, T. C.; Atfield, M. D.; Koclas, J.

    2006-07-01

    The NRU reactor is highly heterogeneous, heavy-water cooled and moderated, with online refuelling capability. It is licensed to operate at a maximum power of 135 MW, with a peak thermal flux of approximately 4.0 x 10{sup 18} n.m{sup -2} . s{sup -1}. In support of the safe operation of NRU, three-dimensional kinetics calculations for reactor transients have been performed using the DONJON code. The code was initially designed to perform space-time kinetics calculations for the CANDU{sup R} power reactors. This paper describes how the DONJON code can be applied to perform neutronic simulations for the analysis of reactor transients in NRU, and presents calculation results for some transients. (authors)

  1. FaceWarehouse: a 3D facial expression database for visual computing.

    PubMed

    Cao, Chen; Weng, Yanlin; Zhou, Shun; Tong, Yiying; Zhou, Kun

    2014-03-01

    We present FaceWarehouse, a database of 3D facial expressions for visual computing applications. We use Kinect, an off-the-shelf RGBD camera, to capture 150 individuals aged 7-80 from various ethnic backgrounds. For each person, we captured the RGBD data of her different expressions, including the neutral expression and 19 other expressions such as mouth-opening, smile, kiss, etc. For every RGBD raw data record, a set of facial feature points on the color image such as eye corners, mouth contour, and the nose tip are automatically localized, and manually adjusted if better accuracy is required. We then deform a template facial mesh to fit the depth data as closely as possible while matching the feature points on the color image to their corresponding points on the mesh. Starting from these fitted face meshes, we construct a set of individual-specific expression blendshapes for each person. These meshes with consistent topology are assembled as a rank-3 tensor to build a bilinear face model with two attributes: identity and expression. Compared with previous 3D facial databases, for every person in our database, there is a much richer matching collection of expressions, enabling depiction of most human facial actions. We demonstrate the potential of FaceWarehouse for visual computing with four applications: facial image manipulation, face component transfer, real-time performance-based facial image animation, and facial animation retargeting from video to image. PMID:24434222

  2. High performance computing approaches for 3D reconstruction of complex biological specimens.

    PubMed

    da Silva, M Laura; Roca-Piera, Javier; Fernández, José-Jesús

    2010-01-01

    Knowledge of the structure of specimens is crucial to determine the role that they play in cellular and molecular biology. To yield the three-dimensional (3D) reconstruction by means of tomographic reconstruction algorithms, we need the use of large projection images and high processing time. Therefore, we propose the use of the high performance computing (HPC) to cope with the huge computational demands of this problem. We have implemented a HPC strategy where the distribution of tasks follows the master-slave paradigm. The master processor distributes a slab of slices, a piece of the final 3D structure to reconstruct, among the slave processors and receives reconstructed slices of the volume. We have evaluated the performance of our HPC approach using different sizes of the slab. We have observed that it is possible to find out an optimal size of the slab for the number of processor used that minimize communications time while maintaining a reasonable grain of parallelism to be exploited by the set of processors. PMID:20865517

  3. Using Computer-Aided Design Software and 3D Printers to Improve Spatial Visualization

    ERIC Educational Resources Information Center

    Katsio-Loudis, Petros; Jones, Millie

    2015-01-01

    Many articles have been published on the use of 3D printing technology. From prefabricated homes and outdoor structures to human organs, 3D printing technology has found a niche in many fields, but especially education. With the introduction of AutoCAD technical drawing programs and now 3D printing, learners can use 3D printed models to develop…

  4. A review of automated image understanding within 3D baggage computed tomography security screening.

    PubMed

    Mouton, Andre; Breckon, Toby P

    2015-01-01

    Baggage inspection is the principal safeguard against the transportation of prohibited and potentially dangerous materials at airport security checkpoints. Although traditionally performed by 2D X-ray based scanning, increasingly stringent security regulations have led to a growing demand for more advanced imaging technologies. The role of X-ray Computed Tomography is thus rapidly expanding beyond the traditional materials-based detection of explosives. The development of computer vision and image processing techniques for the automated understanding of 3D baggage-CT imagery is however, complicated by poor image resolutions, image clutter and high levels of noise and artefacts. We discuss the recent and most pertinent advancements and identify topics for future research within the challenging domain of automated image understanding for baggage security screening CT. PMID:26409422

  5. Tools for 3D scientific visualization in computational aerodynamics at NASA Ames Research Center

    NASA Technical Reports Server (NTRS)

    Bancroft, Gordon; Plessel, Todd; Merritt, Fergus; Watson, Val

    1989-01-01

    Hardware, software, and techniques used by the Fluid Dynamics Division (NASA) for performing visualization of computational aerodynamics, which can be applied to the visualization of flow fields from computer simulations of fluid dynamics about the Space Shuttle, are discussed. Three visualization techniques applied, post-processing, tracking, and steering, are described, as well as the post-processing software packages used, PLOT3D, SURF (Surface Modeller), GAS (Graphical Animation System), and FAST (Flow Analysis software Toolkit). Using post-processing methods a flow simulation was executed on a supercomputer and, after the simulation was complete, the results were processed for viewing. It is shown that the high-resolution, high-performance three-dimensional workstation combined with specially developed display and animation software provides a good tool for analyzing flow field solutions obtained from supercomputers.

  6. Computation of Flow Over a Drag Prediction Workshop Wing/Body Transport Configuration Using CFL3D

    NASA Technical Reports Server (NTRS)

    Rumsey, Christopher L.; Biedron, Robert T.

    2001-01-01

    A Drag Prediction Workshop was held in conjunction with the 19th AIAA Applied Aerodynamics Conference in June 2001. The purpose of the workshop was to assess the prediction of drag by computational methods for a wing/body configuration (DLR-F4) representative of subsonic transport aircraft. This report details computed results submitted to this workshop using the Reynolds-averaged Navier-Stokes code CFL3D. Two supplied grids were used: a point-matched 1-to-1 multi-block grid, and an overset multi-block grid. The 1-to-1 grid, generally of much poorer quality and with less streamwise resolution than the overset grid, is found to be too coarse to adequately resolve the surface pressures. However, the global forces and moments are nonetheless similar to those computed using the overset grid. The effect of three different turbulence models is assessed using the 1-to-1 grid. Surface pressures are very similar overall, and the drag variation due to turbulence model is 18 drag counts. Most of this drag variation is in the friction component, and is attributed in part to insufficient grid resolution of the 1-to-1 grid. The misnomer of 'fully turbulent' computations is discussed; comparisons are made using different transition locations and their effects on the global forces and moments are quantified. Finally, the effect of two different versions of a widely used one-equation turbulence model is explored.

  7. The Effects of 3D Computer Modelling on Conceptual Change about Seasons and Phases of the Moon

    ERIC Educational Resources Information Center

    Kucukozer, Huseyin

    2008-01-01

    In this study, prospective science teachers' misconceptions about the seasons and the phases of the Moon were determined, and then the effects of 3D computer modelling on their conceptual changes were investigated. The topics were covered in two classes with a total of 76 students using a predict-observe-explain strategy supported by 3D computer…

  8. Experiences with the application of the ADIC automatic differentiation tool for to the CSCMDO 3-D volume grid generation code

    SciTech Connect

    Bischof, C.H.; Mauer, A.; Jones, W.T.

    1995-12-31

    Automatic differentiation (AD) is a methodology for developing reliable sensitivity-enhanced versions of arbitrary computer programs with little human effort. It can vastly accelerate the use of advanced simulation codes in multidisciplinary design optimization, since the time for generating and verifying derivative codes is greatly reduced. In this paper, we report on the application of the recently developed ADIC automatic differentiation tool for ANSI C programs to the CSCMDO multiblock three-dimensional volume grid generator. The ADIC-generated code can easily be interfaced with Fortran derivative codes generated with the ADIFOR AD tool FORTRAN 77 programs, thus providing efficient sensitivity-enhancement techniques for multilanguage, multidiscipline problems.

  9. 3D particle simulation of beams using the WARP code: Transport around bends

    SciTech Connect

    Friedman, A.; Grote, D.P.; Callahan, D.A.; Langdon, A.B. ); Haber, I. )

    1990-11-30

    WARP is a discrete-particle simulation program which was developed for studies of space charge dominated ion beams. It combines features of an accelerator code and a particle-in-cell plasma simulation. The code architecture, and techniques employed to enhance efficiency, are briefly described. Current applications are reviewed. In this paper we emphasize the physics of transport of three-dimensional beams around bends. We present a simple bent-beam PIC algorithm. Using this model, we have followed a long, thin beam around a bend in a simple racetrack system (assuming straight-pipe self-fields). Results on beam dynamics are presented; no transverse emittance growth (at mid-pulse) is observed. 11 refs., 5 figs.

  10. Modeling Star-Forming Regions using a 3D Molecular Transport Code

    NASA Astrophysics Data System (ADS)

    Loughnane, R. M.; Redman, M. P.; Keto, E. R.

    2012-07-01

    This paper presents the 3-dimensional non-LTE radiative transfer code, MOLLIE (MOLelcular LIne Explorer), for solving molecular and atomic excitation and radiation transfer in a molecular gas and predicting emergent spectra. The code implementation makes use of the Accelerated Lambda Iteration (ALI) method of Rybicki & Hummer (1991) to solve the radiative transfer equation along rays passing through a spherical model cloud. When convergence between level populations, the radiation field, and the point separation has been obtained, the grid is ray-traced to produce images that can be readily compared to observations. The optimization technique, Fast Simulated Annealing (FSA), adopted by MOLLIE to increase the probability of arriving at a satisfactory output in a timely fashion, is briefly considered.

  11. Applications of the 3-D Deterministic Transport Code Attlla for Core Safety Analysis

    SciTech Connect

    D. S. Lucas

    2004-10-01

    An LDRD (Laboratory Directed Research and Development) project is ongoing at the Idaho National Engineering and Environmental Laboratory (INEEL) for applying the three-dimensional multi-group deterministic neutron transport code (Attila®) to criticality, flux and depletion calculations of the Advanced Test Reactor (ATR). This paper discusses the model development, capabilities of Attila, generation of the cross-section libraries, and comparisons to an ATR MCNP model and future.

  12. A brain-computer interface method combined with eye tracking for 3D interaction.

    PubMed

    Lee, Eui Chul; Woo, Jin Cheol; Kim, Jong Hwa; Whang, Mincheol; Park, Kang Ryoung

    2010-07-15

    With the recent increase in the number of three-dimensional (3D) applications, the need for interfaces to these applications has increased. Although the eye tracking method has been widely used as an interaction interface for hand-disabled persons, this approach cannot be used for depth directional navigation. To solve this problem, we propose a new brain computer interface (BCI) method in which the BCI and eye tracking are combined to analyze depth navigation, including selection and two-dimensional (2D) gaze direction, respectively. The proposed method is novel in the following five ways compared to previous works. First, a device to measure both the gaze direction and an electroencephalogram (EEG) pattern is proposed with the sensors needed to measure the EEG attached to a head-mounted eye tracking device. Second, the reliability of the BCI interface is verified by demonstrating that there is no difference between the real and the imaginary movements for the same work in terms of the EEG power spectrum. Third, depth control for the 3D interaction interface is implemented by an imaginary arm reaching movement. Fourth, a selection method is implemented by an imaginary hand grabbing movement. Finally, for the independent operation of gazing and the BCI, a mode selection method is proposed that measures a user's concentration by analyzing the pupil accommodation speed, which is not affected by the operation of gazing and the BCI. According to experimental results, we confirmed the feasibility of the proposed 3D interaction method using eye tracking and a BCI. PMID:20580646

  13. Computer modeling of 3D structures of cytochrome P450s.

    PubMed

    Chang, Y T; Stiffelman, O B; Loew, G H

    1996-01-01

    The understanding of structure-function relationship of enzymes requires detailed information of their three-dimensional structure. Protein structure determination by X-ray and NMR methods, the two most frequently used experimental procedures, are often difficult and time-consuming. Thus computer modeling of protein structures has become an increasingly active and attractive option for obtaining predictive models of three-dimensional protein structures. Specifically, for the ubiquitous metabolizing heme proteins, the cytochrome P450s, the X-ray structures of four isozymes of bacterial origin, P450cam, P450terp, P450BM-3 and P450eryF have now been determined. However, attempts to obtain the structure of mammalian forms by experimental means have thus far not been successful. Thus, there have been numerous attempts to construct models of mammalian P450s using homology modeling methods in which the known structures have been used to various extents and in various strategies to build models of P450 isozymes. In this paper, we review these efforts and then describe a strategy for structure building and assessment of 3D models of P450s recently developed in our laboratory that corrects many of the weaknesses in the previous procedures. The results are 3D models that for the first time are stable to unconstrained molecular dynamics simulations. The use of this method is demonstrated by the construction and validation of a 3D model for rabbit liver microsomal P450 isozyme 2B4, responsible for the oxidative metabolism of diverse xenobiotics including widely used inhalation anesthetics. Using this 2B4 model, the substrate access channel, substrate binding site and plausible surface regions for binding with P450 redox partners were identified. PMID:9010606

  14. Drug-laden 3D biodegradable label using QR code for anti-counterfeiting of drugs.

    PubMed

    Fei, Jie; Liu, Ran

    2016-06-01

    Wiping out counterfeit drugs is a great task for public health care around the world. The boost of these drugs makes treatment to become potentially harmful or even lethal. In this paper, biodegradable drug-laden QR code label for anti-counterfeiting of drugs is proposed that can provide the non-fluorescence recognition and high capacity. It is fabricated by the laser cutting to achieve the roughness over different surface which causes the difference in the gray levels on the translucent material the QR code pattern, and the micro mold process to obtain the drug-laden biodegradable label. We screened biomaterials presenting the relevant conditions and further requirements of the package. The drug-laden microlabel is on the surface of the troches or the bottom of the capsule and can be read by a simple smartphone QR code reader application. Labeling the pill directly and decoding the information successfully means more convenient and simple operation with non-fluorescence and high capacity in contrast to the traditional methods. PMID:27040262

  15. Cholla: 3D GPU-based hydrodynamics code for astrophysical simulation

    NASA Astrophysics Data System (ADS)

    Schneider, Evan E.; Robertson, Brant E.

    2016-07-01

    Cholla (Computational Hydrodynamics On ParaLLel Architectures) models the Euler equations on a static mesh and evolves the fluid properties of thousands of cells simultaneously using GPUs. It can update over ten million cells per GPU-second while using an exact Riemann solver and PPM reconstruction, allowing computation of astrophysical simulations with physically interesting grid resolutions (>256^3) on a single device; calculations can be extended onto multiple devices with nearly ideal scaling beyond 64 GPUs.

  16. Using 3D infrared imaging to calibrate and refine computational fluid dynamic modeling for large computer and data centers

    NASA Astrophysics Data System (ADS)

    Stockton, Gregory R.

    2011-05-01

    Over the last 10 years, very large government, military, and commercial computer and data center operators have spent millions of dollars trying to optimally cool data centers as each rack has begun to consume as much as 10 times more power than just a few years ago. In fact, the maximum amount of data computation in a computer center is becoming limited by the amount of available power, space and cooling capacity at some data centers. Tens of millions of dollars and megawatts of power are being annually spent to keep data centers cool. The cooling and air flows dynamically change away from any predicted 3-D computational fluid dynamic modeling during construction and as time goes by, and the efficiency and effectiveness of the actual cooling rapidly departs even farther from predicted models. By using 3-D infrared (IR) thermal mapping and other techniques to calibrate and refine the computational fluid dynamic modeling and make appropriate corrections and repairs, the required power for data centers can be dramatically reduced which reduces costs and also improves reliability.

  17. Evaluation of 3D Inverse Code Using Rotor 67 as Test Case

    NASA Technical Reports Server (NTRS)

    Dang, T.

    1998-01-01

    A design modification of Rotor 67 is carried out with a full 3D inverse method. The blade camber surface is modified to produce a prescribed pressure loading distribution, with the blade tangential thickness distribution and the blade stacking line at midchord kept the same as the original Rotor 67 design. Because of the inviscid-flow assumption used in the current version of the method, Rotor 67 geometry is modified for use at a design point different from the original design value. A parametric study with the prescribed pressure loading distribution yields the following results. In the subsonic section, smooth pressure loading shapes generally produce blades with well-behaved blade surface pressure distributions. In the supersonic section, the study shows that the strength and position of the passage shock correlate with the characteristics of the blade pressure loading shape. In general, "smooth" prescribed blade pressure loading distributions generate blade designs with reverse cambers which have the effect of weakening the passage shock.

  18. Quality control of dose volume histogram computation characteristics of 3D treatment planning systems

    NASA Astrophysics Data System (ADS)

    Panitsa, E.; Rosenwald, J. C.; Kappas, C.

    1998-10-01

    Detailed quality control (QC) protocols are a necessity for modern radiotherapy departments. The established QC protocols for treatment planning systems (TPS) do not include recommendations on the advanced features of three-dimensional (3D) treatment planning, like the dose volume histograms (DVH). In this study, a test protocol for DVH characteristics was developed. The protocol assesses the consistency of the DVH computation to the dose distribution calculated by the same TPS by comparing DVH parameters with values obtained by the isodose distributions. The computation parameters (such as the dimension of the computation grid) that are applied to the TPS during the tests are not fixed but set by the user as if the test represents a typical clinical case. Six commercial TPS were examined with this protocol within the frame of the EC project Dynarad (Biomed I). The results of the intercomparison prove the consistency of the DVH results to the isodose values for most of the examined TPS. However, special attention should be paid when working with cases of adverse conditions such as high dose gradient regions. In these cases, higher errors are derived, especially when an insufficient number of dose calculation points are used for the DVH computation.

  19. e-LEA3D: a computational-aided drug design web server

    PubMed Central

    Douguet, Dominique

    2010-01-01

    e-LEA3D web server integrates three complementary tools to perform computer-aided drug design based on molecular fragments. In drug discovery projects, there is a considerable interest in identifying novel and diverse molecular scaffolds to enhance chances of success. The de novo drug design tool is used to invent new ligands to optimize a user-specified scoring function. The composite scoring function includes both structure- and ligand-based evaluations. The de novo approach is an alternative to a blind virtual screening of large compound collections. A heuristic based on a genetic algorithm rapidly finds which fragments or combination of fragments fit a QSAR model or the binding site of a protein. While the approach is ideally suited for scaffold-hopping, this module also allows a scan for possible substituents to a user-specified scaffold. The second tool offers a traditional virtual screening and filtering of an uploaded library of compounds. The third module addresses the combinatorial library design that is based on a user-drawn scaffold and reactants coming, for example, from a chemical supplier. The e-LEA3D server is available at: http://bioinfo.ipmc.cnrs.fr/lea.html. PMID:20444867

  20. 3D robust Chan-Vese model for industrial computed tomography volume data segmentation

    NASA Astrophysics Data System (ADS)

    Liu, Linghui; Zeng, Li; Luan, Xiao

    2013-11-01

    Industrial computed tomography (CT) has been widely applied in many areas of non-destructive testing (NDT) and non-destructive evaluation (NDE). In practice, CT volume data to be dealt with may be corrupted by noise. This paper addresses the segmentation of noisy industrial CT volume data. Motivated by the research on the Chan-Vese (CV) model, we present a region-based active contour model that draws upon intensity information in local regions with a controllable scale. In the presence of noise, a local energy is firstly defined according to the intensity difference within a local neighborhood. Then a global energy is defined to integrate local energy with respect to all image points. In a level set formulation, this energy is represented by a variational level set function, where a surface evolution equation is derived for energy minimization. Comparative analysis with the CV model indicates the comparable performance of the 3D robust Chan-Vese (RCV) model. The quantitative evaluation also shows the segmentation accuracy of 3D RCV. In addition, the efficiency of our approach is validated under several types of noise, such as Poisson noise, Gaussian noise, salt-and-pepper noise and speckle noise.

  1. FaceWarehouse: A 3D Facial Expression Database for Visual Computing.

    PubMed

    Cao, Chen; Weng, Yanlin; Zhou, Shun; Tong, Yiying; Zhou, Kun

    2013-10-25

    We present FaceWarehouse, a database of 3D facial expressions for visual computing applications. We use Microsoft's Kinect system to capture 150 individuals from various ethnic backgrounds. For each person, we captured the RGBD data of her different expressions, including the neutral expression and 19 other expressions. For every raw data record, a set of facial feature points on the color image such as eye corners and mouth contour are automatically localized, and manually adjusted if better accuracy is required. We then deform a template facial mesh to fit the depth data as closely as possible while matching the feature points on the color image to their corresponding points on the mesh. Starting from these fitted face meshes, we construct a set of individual-specific expression blendshapes for each person. These meshes with consistent topology are assembled as a rank-three tensor to build a bilinear face model with two attributes, identity and expression. Compared with previous 3D facial databases, for every person in our database, there is a much richer matching collection of expressions, enabling depiction of most human facial actions. We demonstrate the potential of FaceWarehouse with four applications: facial image manipulation, face component transfer, real-time performance-based facial image animation, and facial animation retargeting from video to image. PMID:24166613

  2. Breast density measurement: 3D cone beam computed tomography (CBCT) images versus 2D digital mammograms

    NASA Astrophysics Data System (ADS)

    Han, Tao; Lai, Chao-Jen; Chen, Lingyun; Liu, Xinming; Shen, Youtao; Zhong, Yuncheng; Ge, Shuaiping; Yi, Ying; Wang, Tianpeng; Yang, Wei T.; Shaw, Chris C.

    2009-02-01

    Breast density has been recognized as one of the major risk factors for breast cancer. However, breast density is currently estimated using mammograms which are intrinsically 2D in nature and cannot accurately represent the real breast anatomy. In this study, a novel technique for measuring breast density based on the segmentation of 3D cone beam CT (CBCT) images was developed and the results were compared to those obtained from 2D digital mammograms. 16 mastectomy breast specimens were imaged with a bench top flat-panel based CBCT system. The reconstructed 3D CT images were corrected for the cupping artifacts and then filtered to reduce the noise level, followed by using threshold-based segmentation to separate the dense tissue from the adipose tissue. For each breast specimen, volumes of the dense tissue structures and the entire breast were computed and used to calculate the volumetric breast density. BI-RADS categories were derived from the measured breast densities and compared with those estimated from conventional digital mammograms. The results show that in 10 of 16 cases the BI-RADS categories derived from the CBCT images were lower than those derived from the mammograms by one category. Thus, breasts considered as dense in mammographic examinations may not be considered as dense with the CBCT images. This result indicates that the relation between breast cancer risk and true (volumetric) breast density needs to be further investigated.

  3. X-ray ptychographic computed tomography at 16 nm isotropic 3D resolution

    PubMed Central

    Holler, M.; Diaz, A.; Guizar-Sicairos, M.; Karvinen, P.; Färm, Elina; Härkönen, Emma; Ritala, Mikko; Menzel, A.; Raabe, J.; Bunk, O.

    2014-01-01

    X-ray ptychography is a scanning variant of coherent diffractive imaging with the ability to image large fields of view at high resolution. It further allows imaging of non-isolated specimens and can produce quantitative mapping of the electron density distribution in 3D when combined with computed tomography. The method does not require imaging lenses, which makes it dose efficient and suitable to multi-keV X-rays, where efficient photon counting, pixelated detectors are available. Here we present the first highly resolved quantitative X-ray ptychographic tomography of an extended object yielding 16 nm isotropic 3D resolution recorded at 2 Å wavelength. This first-of-its-kind demonstration paves the way for ptychographic X-ray tomography to become a promising method for X-ray imaging of representative sample volumes at unmatched resolution, opening tremendous potential for characterizing samples in materials science and biology by filling the resolution gap between electron microscopy and other X-ray imaging techniques. PMID:24457289

  4. A Modular Computer Code for Simulating Reactive Multi-Species Transport in 3-Dimensional Groundwater Systems

    SciTech Connect

    TP Clement

    1999-06-24

    RT3DV1 (Reactive Transport in 3-Dimensions) is computer code that solves the coupled partial differential equations that describe reactive-flow and transport of multiple mobile and/or immobile species in three-dimensional saturated groundwater systems. RT3D is a generalized multi-species version of the US Environmental Protection Agency (EPA) transport code, MT3D (Zheng, 1990). The current version of RT3D uses the advection and dispersion solvers from the DOD-1.5 (1997) version of MT3D. As with MT3D, RT3D also requires the groundwater flow code MODFLOW for computing spatial and temporal variations in groundwater head distribution. The RT3D code was originally developed to support the contaminant transport modeling efforts at natural attenuation demonstration sites. As a research tool, RT3D has also been used to model several laboratory and pilot-scale active bioremediation experiments. The performance of RT3D has been validated by comparing the code results against various numerical and analytical solutions. The code is currently being used to model field-scale natural attenuation at multiple sites. The RT3D code is unique in that it includes an implicit reaction solver that makes the code sufficiently flexible for simulating various types of chemical and microbial reaction kinetics. RT3D V1.0 supports seven pre-programmed reaction modules that can be used to simulate different types of reactive contaminants including benzene-toluene-xylene mixtures (BTEX), and chlorinated solvents such as tetrachloroethene (PCE) and trichloroethene (TCE). In addition, RT3D has a user-defined reaction option that can be used to simulate any other types of user-specified reactive transport systems. This report describes the mathematical details of the RT3D computer code and its input/output data structure. It is assumed that the user is familiar with the basics of groundwater flow and contaminant transport mechanics. In addition, RT3D users are expected to have some experience in

  5. A 3-D Computational Study of a Variable Camber Continuous Trailing Edge Flap (VCCTEF) Spanwise Segment

    NASA Technical Reports Server (NTRS)

    Kaul, Upender K.; Nguyen, Nhan T.

    2015-01-01

    Results of a computational study carried out to explore the effects of various elastomer configurations joining spanwise contiguous Variable Camber Continuous Trailing Edge Flap (VCCTEF) segments are reported here. This research is carried out as a proof-of-concept study that will seek to push the flight envelope in cruise with drag optimization as the objective. The cruise conditions can be well off design such as caused by environmental conditions, maneuvering, etc. To handle these off-design conditions, flap deflection is used so when the flap is deflected in a given direction, the aircraft angle of attack changes accordingly to maintain a given lift. The angle of attack is also a design parameter along with the flap deflection. In a previous 2D study,1 the effect of camber was investigated and the results revealed some insight into the relative merit of various camber settings of the VCCTEF. The present state of the art has not advanced sufficiently to do a full 3-D viscous analysis of the whole NASA Generic Transport Model (GTM) wing with VCCTEF deployed with elastomers. Therefore, this study seeks to explore the local effects of three contiguous flap segments on lift and drag of a model devised here to determine possible trades among various flap deflections to achieve desired lift and drag results. Although this approach is an approximation, it provides new insights into the "local" effects of the relative deflections of the contiguous spanwise flap systems and various elastomer segment configurations. The present study is a natural extension of the 2-D study to assess these local 3-D effects. Design cruise condition at 36,000 feet at free stream Mach number of 0.797 and a mean aerodynamic chord (MAC) based Reynolds number of 30.734x10(exp 6) is simulated for an angle of attack (AoA) range of 0 to 6 deg. In the previous 2-D study, the calculations revealed that the parabolic arc camber (1x2x3) and circular arc camber (VCCTEF222) offered the best L

  6. A comparative study for 2D and 3D computer-aided diagnosis methods for solitary pulmonary nodules.

    PubMed

    Yeh, Chinson; Wang, Jen-Feng; Wu, Ming-Ting; Yen, Chen-Wen; Nagurka, Mark L; Lin, Chen-Liang

    2008-06-01

    Many computer-aided diagnosis (CAD) methods, including 2D and 3D approaches, have been proposed for solitary pulmonary nodules (SPNs). However, the detection and diagnosis of SPNs remain challenging in many clinical circumstances. One goal of this work is to investigate the relative diagnostic accuracy of 2D and 3D methods. An additional goal is to develop a two-stage approach that combines the simplicity of 2D and the accuracy of 3D methods. The experimental results show statistically significant differences between the diagnostic accuracy of 2D and 3D methods. The results also show that with a very minor drop in diagnostic performance the two-stage approach can significantly reduce the number of nodules needed to be processed by the 3D method, streamlining the computational demand. PMID:18313899

  7. Hyperspeed data acquisition for 3D computer vision metrology as applied to law enforcement

    NASA Astrophysics Data System (ADS)

    Altschuler, Bruce R.

    1997-02-01

    cycling at 1 millisecond, each pattern is projected and recorded in a cycle time of 1/500th second. An entire set of patterns can then be recorded within 1/60th second. This pattern set contains all the information necessary to calculate a 3-D map. The use of hyper-speed parallel video cameras in conjunction with high speed modulators enables video data rate acquisition of all data necessary to calculate numerical digital 3-D metrological surface data. Thus a 3-D video camera can operate at the rate of a conventional 2-D video camera. The speed of actual 3-D output information is a function of the speed of the computer, a parallel processor being preferred for the task. With video rate 3-D data acquisition law enforcement could survey crime scenes, obtain evidence, watch and record people, packages, suitcases, and record disaster scenes very rapidly.

  8. A Dynamic 3D Graphical Representation for RNA Structure Analysis and Its Application in Non-Coding RNA Classification

    PubMed Central

    Dong, Xiaoqing; Fang, Yiliang; Wang, Kejing; Zhu, Lijuan; Wang, Ke; Huang, Tao

    2016-01-01

    With the development of new technologies in transcriptome and epigenetics, RNAs have been identified to play more and more important roles in life processes. Consequently, various methods have been proposed to assess the biological functions of RNAs and thus classify them functionally, among which comparative study of RNA structures is perhaps the most important one. To measure the structural similarity of RNAs and classify them, we propose a novel three dimensional (3D) graphical representation of RNA secondary structure, in which an RNA secondary structure is first transformed into a characteristic sequence based on chemical property of nucleic acids; a dynamic 3D graph is then constructed for the characteristic sequence; and lastly a numerical characterization of the 3D graph is used to represent the RNA secondary structure. We tested our algorithm on three datasets: (1) Dataset I consisting of nine RNA secondary structures of viruses, (2) Dataset II consisting of complex RNA secondary structures including pseudo-knots, and (3) Dataset III consisting of 18 non-coding RNA families. We also compare our method with other nine existing methods using Dataset II and III. The results demonstrate that our method is better than other methods in similarity measurement and classification of RNA secondary structures. PMID:27213271

  9. Predictions of bubbly flows in vertical pipes using two-fluid models in CFDS-FLOW3D code

    SciTech Connect

    Banas, A.O.; Carver, M.B.; Unrau, D.

    1995-09-01

    This paper reports the results of a preliminary study exploring the performance of two sets of two-fluid closure relationships applied to the simulation of turbulent air-water bubbly upflows through vertical pipes. Predictions obtained with the default CFDS-FLOW3D model for dispersed flows were compared with the predictions of a new model (based on the work of Lee), and with the experimental data of Liu. The new model, implemented in the CFDS-FLOW3D code, included additional source terms in the {open_quotes}standard{close_quotes} {kappa}-{epsilon} transport equations for the liquid phase, as well as modified model coefficients and wall functions. All simulations were carried out in a 2-D axisymmetric format, collapsing the general multifluid framework of CFDS-FLOW3D to the two-fluid (air-water) case. The newly implemented model consistently improved predictions of radial-velocity profiles of both phases, but failed to accurately reproduce the experimental phase-distribution data. This shortcoming was traced to the neglect of anisotropic effects in the modelling of liquid-phase turbulence. In this sense, the present investigation should be considered as the first step toward the ultimate goal of developing a theoretically sound and universal CFD-type two-fluid model for bubbly flows in channels.

  10. A Dynamic 3D Graphical Representation for RNA Structure Analysis and Its Application in Non-Coding RNA Classification.

    PubMed

    Zhang, Yi; Huang, Haiyun; Dong, Xiaoqing; Fang, Yiliang; Wang, Kejing; Zhu, Lijuan; Wang, Ke; Huang, Tao; Yang, Jialiang

    2016-01-01

    With the development of new technologies in transcriptome and epigenetics, RNAs have been identified to play more and more important roles in life processes. Consequently, various methods have been proposed to assess the biological functions of RNAs and thus classify them functionally, among which comparative study of RNA structures is perhaps the most important one. To measure the structural similarity of RNAs and classify them, we propose a novel three dimensional (3D) graphical representation of RNA secondary structure, in which an RNA secondary structure is first transformed into a characteristic sequence based on chemical property of nucleic acids; a dynamic 3D graph is then constructed for the characteristic sequence; and lastly a numerical characterization of the 3D graph is used to represent the RNA secondary structure. We tested our algorithm on three datasets: (1) Dataset I consisting of nine RNA secondary structures of viruses, (2) Dataset II consisting of complex RNA secondary structures including pseudo-knots, and (3) Dataset III consisting of 18 non-coding RNA families. We also compare our method with other nine existing methods using Dataset II and III. The results demonstrate that our method is better than other methods in similarity measurement and classification of RNA secondary structures. PMID:27213271

  11. Real-time computer-generated integral imaging and 3D image calibration for augmented reality surgical navigation.

    PubMed

    Wang, Junchen; Suenaga, Hideyuki; Liao, Hongen; Hoshi, Kazuto; Yang, Liangjing; Kobayashi, Etsuko; Sakuma, Ichiro

    2015-03-01

    Autostereoscopic 3D image overlay for augmented reality (AR) based surgical navigation has been studied and reported many times. For the purpose of surgical overlay, the 3D image is expected to have the same geometric shape as the original organ, and can be transformed to a specified location for image overlay. However, how to generate a 3D image with high geometric fidelity and quantitative evaluation of 3D image's geometric accuracy have not been addressed. This paper proposes a graphics processing unit (GPU) based computer-generated integral imaging pipeline for real-time autostereoscopic 3D display, and an automatic closed-loop 3D image calibration paradigm for displaying undistorted 3D images. Based on the proposed methods, a novel AR device for 3D image surgical overlay is presented, which mainly consists of a 3D display, an AR window, a stereo camera for 3D measurement, and a workstation for information processing. The evaluation on the 3D image rendering performance with 2560×1600 elemental image resolution shows the rendering speeds of 50-60 frames per second (fps) for surface models, and 5-8 fps for large medical volumes. The evaluation of the undistorted 3D image after the calibration yields sub-millimeter geometric accuracy. A phantom experiment simulating oral and maxillofacial surgery was also performed to evaluate the proposed AR overlay device in terms of the image registration accuracy, 3D image overlay accuracy, and the visual effects of the overlay. The experimental results show satisfactory image registration and image overlay accuracy, and confirm the system usability. PMID:25465067

  12. Fast and Robust Sixth Order Multigrid Computation for 3D Convection Diffusion Equation.

    PubMed

    Wang, Yin; Zhang, Jun

    2010-10-15

    We present a sixth order explicit compact finite difference scheme to solve the three dimensional (3D) convection diffusion equation. We first use multiscale multigrid method to solve the linear systems arising from a 19-point fourth order discretization scheme to compute the fourth order solutions on both the coarse grid and the fine grid. Then an operator based interpolation scheme combined with an extrapolation technique is used to approximate the sixth order accurate solution on the fine grid. Since the multigrid method using a standard point relaxation smoother may fail to achieve the optimal grid independent convergence rate for solving convection diffusion equation with a high Reynolds number, we implement the plane relaxation smoother in the multigrid solver to achieve better grid independency. Supporting numerical results are presented to demonstrate the efficiency and accuracy of the sixth order compact scheme (SOC), compared with the previously published fourth order compact scheme (FOC). PMID:21151737

  13. A revised scheme to compute horizontal covariances in an oceanographic 3D-VAR assimilation system

    NASA Astrophysics Data System (ADS)

    Farina, R.; Dobricic, S.; Storto, A.; Masina, S.; Cuomo, S.

    2015-03-01

    We propose an improvement of an oceanographic three dimensional variational assimilation scheme (3D-VAR), named OceanVar, by introducing a recursive filter (RF) with the third order of accuracy (3rd-RF), instead of an RF with first order of accuracy (1st-RF), to approximate horizontal Gaussian covariances. An advantage of the proposed scheme is that the CPU's time can be substantially reduced with benefits on the large scale applications. Experiments estimating the impact of 3rd-RF are performed by assimilating oceanographic data in two realistic oceanographic applications. The results evince benefits in terms of assimilation process computational time, accuracy of the Gaussian correlation modeling, and show that the 3rd-RF is a suitable tool for operational data assimilation.

  14. An accurate quadrature technique for the contact boundary in 3D finite element computations

    NASA Astrophysics Data System (ADS)

    Duong, Thang X.; Sauer, Roger A.

    2015-01-01

    This paper presents a new numerical integration technique for 3D contact finite element implementations, focusing on a remedy for the inaccurate integration due to discontinuities at the boundary of contact surfaces. The method is based on the adaptive refinement of the integration domain along the boundary of the contact surface, and is accordingly denoted RBQ for refined boundary quadrature. It can be used for common element types of any order, e.g. Lagrange, NURBS, or T-Spline elements. In terms of both computational speed and accuracy, RBQ exhibits great advantages over a naive increase of the number of quadrature points. Also, the RBQ method is shown to remain accurate for large deformations. Furthermore, since the sharp boundary of the contact surface is determined, it can be used for various purposes like the accurate post-processing of the contact pressure. Several examples are presented to illustrate the new technique.

  15. Interpretation of 3D void measurements with Tripoli4.6/JEFF3.1.1 Monte Carlo code

    SciTech Connect

    Blaise, P.; Colomba, A.

    2012-07-01

    The present work details the first analysis of the 3D void phase conducted during the EPICURE/UM17x17/7% mixed UOX/MOX configuration. This configuration is composed of a homogeneous central 17x17 MOX-7% assembly, surrounded by portions of 17x17 1102 assemblies with guide-tubes. The void bubble is modelled by a small waterproof 5x5 fuel pin parallelepiped box of 11 cm height, placed in the centre of the MOX assembly. This bubble, initially placed at the core mid-plane, is then moved in different axial positions to study the evolution in the core of the axial perturbation. Then, to simulate the growing of this bubble in order to understand the effects of increased void fraction along the fuel pin, 3 and 5 bubbles have been stacked axially, from the core mid-plane. The C/E comparison obtained with the Monte Carlo code Tripoli4 for both radial and axial fission rate distributions, and in particular the reproduction of the very important flux gradients at the void/water interfaces, changing as the bubble is displaced along the z-axis are very satisfactory. It demonstrates both the capability of the code and its library to reproduce this kind of situation, as the very good quality of the experimental results, confirming the UM-17x17 as an excellent experimental benchmark for 3D code validation. This work has been performed within the frame of the V and V program for the future APOLL03 deterministic code of CEA starting in 2012, and its V and V benchmarking database. (authors)

  16. Effects of Secondary Circuit Modeling on Results of Pressurized Water Reactor Main Steam Line Break Benchmark Calculations with New Coupled Code TRAB-3D/SMABRE

    SciTech Connect

    Daavittila, Antti; Haemaelaeinen, Anitta; Kyrki-Rajamaeki, Riitta

    2003-05-15

    All of the three exercises of the Organization for Economic Cooperation and Development/Nuclear Regulatory Commission pressurized water reactor main steam line break (PWR MSLB) benchmark were calculated at VTT, the Technical Research Centre of Finland. For the first exercise, the plant simulation with point-kinetic neutronics, the thermal-hydraulics code SMABRE was used. The second exercise was calculated with the three-dimensional reactor dynamics code TRAB-3D, and the third exercise with the combination TRAB-3D/SMABRE. VTT has over ten years' experience of coupling neutronic and thermal-hydraulic codes, but this benchmark was the first time these two codes, both developed at VTT, were coupled together. The coupled code system is fast and efficient; the total computation time of the 100-s transient in the third exercise was 16 min on a modern UNIX workstation. The results of all the exercises are similar to those of the other participants. In order to demonstrate the effect of secondary circuit modeling on the results, three different cases were calculated. In case 1 there is no phase separation in the steam lines and no flow reversal in the aspirator. In case 2 the flow reversal in the aspirator is allowed, but there is no phase separation in the steam lines. Finally, in case 3 the drift-flux model is used for the phase separation in the steam lines, but the aspirator flow reversal is not allowed. With these two modeling variations, it is possible to cover a remarkably broad range of results. The maximum power level reached after the reactor trip varies from 534 to 904 MW, the range of the time of the power maximum being close to 30 s. Compared to the total calculated transient time of 100 s, the effect of the secondary side modeling is extremely important.

  17. Analysis of bite marks in foodstuffs by computer tomography (cone beam CT)--3D reconstruction.

    PubMed

    Marques, Jeidson; Musse, Jamilly; Caetano, Catarina; Corte-Real, Francisco; Corte-Real, Ana Teresa

    2013-12-01

    The use of three-dimensional (3D) analysis of forensic evidence is highlighted in comparison with traditional methods. This three-dimensional analysis is based on the registration of the surface from a bitten object. The authors propose to use Cone Beam Computed Tomography (CBCT), which is used in dental practice, in order to study the surface and interior of bitten objects and dental casts of suspects. In this study, CBCT is applied to the analysis of bite marks in foodstuffs, which may be found in a forensic case scenario. 6 different types of foodstuffs were used: chocolate, cheese, apple, chewing gum, pizza and tart (flaky pastry and custard). The food was bitten into and dental casts of the possible suspects were made. The dental casts and bitten objects were registered using an x-ray source and the CBCT equipment iCAT® (Pennsylvania, EUA). The software InVivo5® (Anatomage Inc, EUA) was used to visualize and analyze the tomographic slices and 3D reconstructions of the objects. For each material an estimate of its density was assessed by two methods: HU values and specific gravity. All the used materials were successfully reconstructed as good quality 3D images. The relative densities of the materials in study were compared. Amongst the foodstuffs, the chocolate had the highest density (median value 100.5 HU and 1,36 g/cm(3)), while the pizza showed to have the lowest (median value -775 HU and 0,39 g/cm(3)), on both scales. Through tomographic slices and three-dimensional reconstructions it was possible to perform the metric analysis of the bite marks in all the foodstuffs, except for the pizza. These measurements could also be obtained from the dental casts. The depth of the bite mark was also successfully determined in all the foodstuffs except for the pizza. Cone Beam Computed Tomography has the potential to become an important tool for forensic sciences, namely for the registration and analysis of bite marks in foodstuffs that may be found in a crime

  18. Development of Scientific Simulation 3D Full Wave ICRF Code for Stellarators and Heating/CD Scenarios Development

    SciTech Connect

    Vdovin V.L.

    2005-08-15

    In this report we describe theory and 3D full wave code description for the wave excitation, propagation and absorption in 3-dimensional (3D) stellarator equilibrium high beta plasma in ion cyclotron frequency range (ICRF). This theory forms a basis for a 3D code creation, urgently needed for the ICRF heating scenarios development for the operated LHD, constructed W7-X, NCSX and projected CSX3 stellarators, as well for re evaluation of ICRF scenarios in operated tokamaks and in the ITER . The theory solves the 3D Maxwell-Vlasov antenna-plasma-conducting shell boundary value problem in the non-orthogonal flux coordinates ({Psi}, {theta}, {var_phi}), {Psi} being magnetic flux function, {theta} and {var_phi} being the poloidal and toroidal angles, respectively. All basic physics, like wave refraction, reflection and diffraction are self consistently included, along with the fundamental ion and ion minority cyclotron resonances, two ion hybrid resonance, electron Landau and TTMP absorption. Antenna reactive impedance and loading resistance are also calculated and urgently needed for an antenna -generator matching. This is accomplished in a real confining magnetic field being varying in a plasma major radius direction, in toroidal and poloidal directions, through making use of the hot dense plasma wave induced currents with account to the finite Larmor radius effects. We expand the solution in Fourier series over the toroidal ({var_phi}) and poloidal ({theta}) angles and solve resulting ordinary differential equations in a radial like {Psi}-coordinate by finite difference method. The constructed discretization scheme is divergent-free one, thus retaining the basic properties of original equations. The Fourier expansion over the angle coordinates has given to us the possibility to correctly construct the ''parallel'' wave number k{sub //}, and thereby to correctly describe the ICRF waves absorption by a hot plasma. The toroidal harmonics are tightly coupled with each

  19. Numerical model of water flow and solute accumulation in vertisols using HYDRUS 2D/3D code

    NASA Astrophysics Data System (ADS)

    Weiss, Tomáš; Dahan, Ofer; Turkeltub, Tuvia

    2015-04-01

    Keywords: dessication-crack-induced-salinization, preferential flow, conceptual model, numerical model, vadose zone, vertisols, soil water retention function, HYDRUS 2D/3D Vertisols cover a hydrologically very significant area of semi-arid regions often through which water infiltrates to groundwater aquifers. Understanding of water flow and solute accumulation is thus very relevant to agricultural activity and water resources management. Previous works suggest a conceptual model of dessication-crack-induced-salinization where salinization of sediment in the deep section of the vadose zone (up to 4 m) is induced by subsurface evaporation due to convective air flow in the dessication cracks. It suggests that the salinization is induced by the hydraulic gradient between the dry sediment in the vicinity of cracks (low potential) and the relatively wet sediment further from the main cracks (high potential). This paper presents a modified previously suggested conceptual model and a numerical model. The model uses a simple uniform flow approach but unconventionally prescribes the boundary conditions and the hydraulic parameters of soil. The numerical model is bound to one location close to a dairy farm waste lagoon, but the application of the suggested conceptual model could be possibly extended to all semi-arid regions with vertisols. Simulations were conducted using several modeling approaches with an ultimate goal of fitting the simulation results to the controlling variables measured in the field: temporal variation in water content across thick layer of unsaturated clay sediment (>10 m), sediment salinity and salinity the water draining down the vadose zone to the water table. The development of the model was engineered in several steps; all computed as forward solutions by try-and-error approach. The model suggests very deep instant infiltration of fresh water up to 12 m, which is also supported by the field data. The paper suggests prescribing a special atmospheric

  20. DISCO: A 3D Moving-mesh Magnetohydrodynamics Code Designed for the Study of Astrophysical Disks

    NASA Astrophysics Data System (ADS)

    Duffell, Paul C.

    2016-09-01

    This work presents the publicly available moving-mesh magnetohydrodynamics (MHD) code DISCO. DISCO is efficient and accurate at evolving orbital fluid motion in two and three dimensions, especially at high Mach numbers. DISCO employs a moving-mesh approach utilizing a dynamic cylindrical mesh that can shear azimuthally to follow the orbital motion of the gas. The moving mesh removes diffusive advection errors and allows for longer time-steps than a static grid. MHD is implemented in DISCO using an HLLD Riemann solver and a novel constrained transport (CT) scheme that is compatible with the mesh motion. DISCO is tested against a wide variety of problems, which are designed to test its stability, accuracy, and scalability. In addition, several MHD tests are performed which demonstrate the accuracy and stability of the new CT approach, including two tests of the magneto-rotational instability, one testing the linear growth rate and the other following the instability into the fully turbulent regime.

  1. Parametric Analysis of a Turbine Trip Event in a BWR Using a 3D Nodal Code

    SciTech Connect

    Gorzel, A.

    2006-07-01

    Two essential thermal hydraulics safety criteria concerning the reactor core are that even during operational transients there is no fuel melting and not-permissible cladding temperatures are avoided. A common concept for boiling water reactors is to establish a minimum critical power ratio (MCPR) for steady state operation. For this MCPR it is shown that only a very small number of fuel rods suffers a short-term dryout during the transient. It is known from experience that the limiting transient for the determination of the MCPR is the turbine trip with blocked bypass system. This fast transient was simulated for a German BWR by use of the three-dimensional reactor analysis transient code SIMULATE-3K. The transient behaviour of the hot channels was used as input for the dryout calculation with the transient thermal hydraulics code FRANCESCA. By this way the maximum reduction of the CPR during the transient could be calculated. The fast increase in reactor power due to the pressure increase and to an increased core inlet flow is limited mainly by the Doppler effect, but automatically triggered operational measures also can contribute to the mitigation of the turbine trip. One very important method is the short-term fast reduction of the recirculation pump speed which is initiated e. g. by a pressure increase in front of the turbine. The large impacts of the starting time and of the rate of the pump speed reduction on the power progression and hence on the deterioration of CPR is presented. Another important procedure to limit the effects of the transient is the fast shutdown of the reactor that is caused when the reactor power reaches the limit value. It is shown that the SCRAM is not fast enough to reduce the first power maximum, but is able to prevent the appearance of a second - much smaller - maximum that would occur around one second after the first one in the absence of a SCRAM. (author)

  2. Enabling 3D-Liver Perfusion Mapping from MR-DCE Imaging Using Distributed Computing

    PubMed Central

    Leporq, Benjamin; Camarasu-Pop, Sorina; Davila-Serrano, Eduardo E.; Pilleul, Frank; Beuf, Olivier

    2013-01-01

    An MR acquisition protocol and a processing method using distributed computing on the European Grid Infrastructure (EGI) to allow 3D liver perfusion parametric mapping after Magnetic Resonance Dynamic Contrast Enhanced (MR-DCE) imaging are presented. Seven patients (one healthy control and six with chronic liver diseases) were prospectively enrolled after liver biopsy. MR-dynamic acquisition was continuously performed in free-breathing during two minutes after simultaneous intravascular contrast agent (MS-325 blood pool agent) injection. Hepatic capillary system was modeled by a 3-parameters one-compartment pharmacokinetic model. The processing step was parallelized and executed on the EGI. It was modeled and implemented as a grid workflow using the Gwendia language and the MOTEUR workflow engine. Results showed good reproducibility in repeated processing on the grid. The results obtained from the grid were well correlated with ROI-based reference method ran locally on a personal computer. The speed-up range was 71 to 242 with an average value of 126. In conclusion, distributed computing applied to perfusion mapping brings significant speed-up to quantification step to be used for further clinical studies in a research context. Accuracy would be improved with higher image SNR accessible on the latest 3T MR systems available today. PMID:27006915

  3. Automated Lung Segmentation and Image Quality Assessment for Clinical 3-D/4-D-Computed Tomography

    PubMed Central

    Li, Guang

    2014-01-01

    4-D-computed tomography (4DCT) provides not only a new dimension of patient-specific information for radiation therapy planning and treatment, but also a challenging scale of data volume to process and analyze. Manual analysis using existing 3-D tools is unable to keep up with vastly increased 4-D data volume, automated processing and analysis are thus needed to process 4DCT data effectively and efficiently. In this paper, we applied ideas and algorithms from image/signal processing, computer vision, and machine learning to 4DCT lung data so that lungs can be reliably segmented in a fully automated manner, lung features can be visualized and measured on the fly via user interactions, and data quality classifications can be computed in a robust manner. Comparisons of our results with an established treatment planning system and calculation by experts demonstrated negligible discrepancies (within ±2%) for volume assessment but one to two orders of magnitude performance enhancement. An empirical Fourier-analysis-based quality measure-delivered performances closely emulating human experts. Three machine learners are inspected to justify the viability of machine learning techniques used to robustly identify data quality of 4DCT images in the scalable manner. The resultant system provides a toolkit that speeds up 4-D tasks in the clinic and facilitates clinical research to improve current clinical practice. PMID:25621194

  4. Estimation of aortic valve leaflets from 3D CT images using local shape dictionaries and linear coding

    NASA Astrophysics Data System (ADS)

    Liang, Liang; Martin, Caitlin; Wang, Qian; Sun, Wei; Duncan, James

    2016-03-01

    Aortic valve (AV) disease is a significant cause of morbidity and mortality. The preferred treatment modality for severe AV disease is surgical resection and replacement of the native valve with either a mechanical or tissue prosthetic. In order to develop effective and long-lasting treatment methods, computational analyses, e.g., structural finite element (FE) and computational fluid dynamic simulations, are very effective for studying valve biomechanics. These computational analyses are based on mesh models of the aortic valve, which are usually constructed from 3D CT images though many hours of manual annotation, and therefore an automatic valve shape reconstruction method is desired. In this paper, we present a method for estimating the aortic valve shape from 3D cardiac CT images, which is represented by triangle meshes. We propose a pipeline for aortic valve shape estimation which includes novel algorithms for building local shape dictionaries and for building landmark detectors and curve detectors using local shape dictionaries. The method is evaluated on real patient image dataset using a leave-one-out approach and achieves an average accuracy of 0.69 mm. The work will facilitate automatic patient-specific computational modeling of the aortic valve.

  5. Improved Algorithms and Methods for Solving Strongly Variable-Viscosity 3D Stokes flow and Strongly Variable Permeability 3D D’Arcy flow on a Parallel Computer

    NASA Astrophysics Data System (ADS)

    Morgan, J. P.; Hasenclever, J.; Shi, C.

    2009-12-01

    Computational studies of mantle convection face large challenges to obtain fast and accurate solutions for variable viscosity 3d flow. Recently we have been using parallel (MPI-based) MATLAB to more thoroughly explore possible pitfalls and algorithmic improvements to current ‘best-practice’ variable viscosity Stokes and D’Arcy flow solvers. Here we focus on study of finite-element solvers based on a decomposition of the equations for incompressible Stokes flow: Ku + Gp = f and G’u = 0 (K-velocity stiffness matrix, G-discretized gradient operator, G’=transpose(G)-discretized divergence operator) into a single equation for pressure Sp==G’K^-1Gp =G’K^-1f, in which the velocity is also updated as part of each pressure iteration. The outer pressure iteration is solved with preconditioned conjugate gradients (CG) (Maday and Patera, 1989), with a multigrid-preconditioned CG solver for the z=K^-1 (Gq) step of each pressure iteration. One fairly well-known pitfall (Fortin, 1985) is that constant-pressure elements can generate a spurious non-zero flow under a constant body force within non-rectangular geometries. We found a new pitfall when using an iterative method to solve the Kz=y operation in evaluating each G’K^-1Gq product -- even if the residual of the outer pressure equation converges to zero, the discrete divergence of this equation does not correspondingly converge; the error in the incompressibility depends on roughly the square of the tolerance used to solve each Kz=y velocity-like subproblem. Our current best recipe is: (1) Use flexible CG (cf. Notay, 2001) to solve the outer pressure problem. This is analogous to GMRES for a symmetric positive definite problem. It allows use of numerically unsymmetric and/or inexact preconditioners with CG. (2) In this outer-iteration, use an ‘alpha-bar’ technique to find the appropriate magnitude alpha to change the solution in each search direction. This improvement allows a similar iterative tolerance of

  6. Solwnd: A 3D Compressible MHD Code for Solar Wind Studies. Version 1.0: Cartesian Coordinates

    NASA Technical Reports Server (NTRS)

    Deane, Anil E.

    1996-01-01

    Solwnd 1.0 is a three-dimensional compressible MHD code written in Fortran for studying the solar wind. Time-dependent boundary conditions are available. The computational algorithm is based on Flux Corrected Transport and the code is based on the existing code of Zalesak and Spicer. The flow considered is that of shear flow with incoming flow that perturbs this base flow. Several test cases corresponding to pressure balanced magnetic structures with velocity shear flow and various inflows including Alfven waves are presented. Version 1.0 of solwnd considers a rectangular Cartesian geometry. Future versions of solwnd will consider a spherical geometry. Some discussions of this issue is presented.

  7. Upgrades of Two Computer Codes for Analysis of Turbomachinery

    NASA Technical Reports Server (NTRS)

    Chima, Rodrick V.; Liou, Meng-Sing

    2005-01-01

    Major upgrades have been made in two of the programs reported in "ive Computer Codes for Analysis of Turbomachinery". The affected programs are: Swift -- a code for three-dimensional (3D) multiblock analysis; and TCGRID, which generates a 3D grid used with Swift. Originally utilizing only a central-differencing scheme for numerical solution, Swift was augmented by addition of two upwind schemes that give greater accuracy but take more computing time. Other improvements in Swift include addition of a shear-stress-transport turbulence model for better prediction of adverse pressure gradients, addition of an H-grid capability for flexibility in modeling flows in pumps and ducts, and modification to enable simultaneous modeling of hub and tip clearances. Improvements in TCGRID include modifications to enable generation of grids for more complicated flow paths and addition of an option to generate grids compatible with the ADPAC code used at NASA and in industry. For both codes, new test cases were developed and documentation was updated. Both codes were converted to Fortran 90, with dynamic memory allocation. Both codes were also modified for ease of use in both UNIX and Windows operating systems.

  8. Potential hazards of viewing 3-D stereoscopic television, cinema and computer games: a review.

    PubMed

    Howarth, Peter A

    2011-03-01

    The visual stimulus provided by a 3-D stereoscopic display differs from that of the real world because the image provided to each eye is produced on a flat surface. The distance from the screen to the eye remains fixed, providing a single focal distance, but the introduction of disparity between the images allows objects to be located geometrically in front of, or behind, the screen. Unlike in the real world, the stimulus to accommodation and the stimulus to convergence do not match. Although this mismatch is used positively in some forms of Orthoptic treatment, a number of authors have suggested that it could negatively lead to the development of asthenopic symptoms. From knowledge of the zone of clear, comfortable, single binocular vision one can predict that, for people with normal binocular vision, adverse symptoms will not be present if the discrepancy is small, but are likely if it is large, and that what constitutes 'large' and 'small' are idiosyncratic to the individual. The accommodation-convergence mismatch is not, however, the only difference between the natural and the artificial stimuli. In the former case, an object located in front of, or behind, a fixated object will not only be perceived as double if the images fall outside Panum's fusional areas, but it will also be defocused and blurred. In the latter case, however, it is usual for the producers of cinema, TV or computer game content to provide an image that is in focus over the whole of the display, and as a consequence diplopic images will be sharply in focus. The size of Panum's fusional area is spatial frequency-dependent, and because of this the high spatial frequencies present in the diplopic 3-D image will provide a different stimulus to the fusion system from that found naturally. PMID:21309798

  9. Projection-based metal-artifact reduction for industrial 3D X-ray computed tomography.

    PubMed

    Amirkhanov, Artem; Heinzl, Christoph; Reiter, Michael; Kastner, Johann; Gröller, M Eduard

    2011-12-01

    Multi-material components, which contain metal parts surrounded by plastic materials, are highly interesting for inspection using industrial 3D X-ray computed tomography (3DXCT). Examples of this application scenario are connectors or housings with metal inlays in the electronic or automotive industry. A major problem of this type of components is the presence of metal, which causes streaking artifacts and distorts the surrounding media in the reconstructed volume. Streaking artifacts and dark-band artifacts around metal components significantly influence the material characterization (especially for the plastic components). In specific cases these artifacts even prevent a further analysis. Due to the nature and the different characteristics of artifacts, the development of an efficient artifact-reduction technique in reconstruction-space is rather complicated. In this paper we present a projection-space pipeline for metal-artifacts reduction. The proposed technique first segments the metal in the spatial domain of the reconstructed volume in order to separate it from the other materials. Then metal parts are forward-projected on the set of projections in a way that metal-projection regions are treated as voids. Subsequently the voids, which are left by the removed metal, are interpolated in the 2D projections. Finally, the metal is inserted back into the reconstructed 3D volume during the fusion stage. We present a visual analysis tool, allowing for interactive parameter estimation of the metal segmentation. The results of the proposed artifact-reduction technique are demonstrated on a test part as well as on real world components. For these specimens we achieve a significant reduction of metal artifacts, allowing an enhanced material characterization. PMID:22034338

  10. Toward virtual anatomy: a stereoscopic 3-D interactive multimedia computer program for cranial osteology.

    PubMed

    Trelease, R B

    1996-01-01

    Advances in computer visualization and user interface technologies have enabled development of "virtual reality" programs that allow users to perceive and to interact with objects in artificial three-dimensional environments. Such technologies were used to create an image database and program for studying the human skull, a specimen that has become increasingly expensive and scarce. Stereoscopic image pairs of a museum-quality skull were digitized from multiple views. For each view, the stereo pairs were interlaced into a single, field-sequential stereoscopic picture using an image processing program. The resulting interlaced image files are organized in an interactive multimedia program. At run-time, gray-scale 3-D images are displayed on a large-screen computer monitor and observed through liquid-crystal shutter goggles. Users can then control the program and change views with a mouse and cursor to point-and-click on screen-level control words ("buttons"). For each view of the skull, an ID control button can be used to overlay pointers and captions for important structures. Pointing and clicking on "hidden buttons" overlying certain structures triggers digitized audio spoken word descriptions or mini lectures. PMID:8793223

  11. High-Performance Computation of Distributed-Memory Parallel 3D Voronoi and Delaunay Tessellation

    SciTech Connect

    Peterka, Tom; Morozov, Dmitriy; Phillips, Carolyn

    2014-11-14

    Computing a Voronoi or Delaunay tessellation from a set of points is a core part of the analysis of many simulated and measured datasets: N-body simulations, molecular dynamics codes, and LIDAR point clouds are just a few examples. Such computational geometry methods are common in data analysis and visualization; but as the scale of simulations and observations surpasses billions of particles, the existing serial and shared-memory algorithms no longer suffice. A distributed-memory scalable parallel algorithm is the only feasible approach. The primary contribution of this paper is a new parallel Delaunay and Voronoi tessellation algorithm that automatically determines which neighbor points need to be exchanged among the subdomains of a spatial decomposition. Other contributions include periodic and wall boundary conditions, comparison of our method using two popular serial libraries, and application to numerous science datasets.

  12. 3D printing meets computational astrophysics: deciphering the structure of η Carinae's inner colliding winds

    NASA Astrophysics Data System (ADS)

    Madura, T. I.; Clementel, N.; Gull, T. R.; Kruip, C. J. H.; Paardekooper, J.-P.

    2015-06-01

    We present the first 3D prints of output from a supercomputer simulation of a complex astrophysical system, the colliding stellar winds in the massive (≳120 M⊙), highly eccentric (e ˜ 0.9) binary star system η Carinae. We demonstrate the methodology used to incorporate 3D interactive figures into a PDF (Portable Document Format) journal publication and the benefits of using 3D visualization and 3D printing as tools to analyse data from multidimensional numerical simulations. Using a consumer-grade 3D printer (MakerBot Replicator 2X), we successfully printed 3D smoothed particle hydrodynamics simulations of η Carinae's inner (r ˜ 110 au) wind-wind collision interface at multiple orbital phases. The 3D prints and visualizations reveal important, previously unknown `finger-like' structures at orbital phases shortly after periastron (φ ˜ 1.045) that protrude radially outwards from the spiral wind-wind collision region. We speculate that these fingers are related to instabilities (e.g. thin-shell, Rayleigh-Taylor) that arise at the interface between the radiatively cooled layer of dense post-shock primary-star wind and the fast (3000 km s-1), adiabatic post-shock companion-star wind. The success of our work and easy identification of previously unrecognized physical features highlight the important role 3D printing and interactive graphics can play in the visualization and understanding of complex 3D time-dependent numerical simulations of astrophysical phenomena.

  13. Memory usage reduction and intensity modulation for 3D holographic display using non-uniformly sampled computer-generated holograms

    NASA Astrophysics Data System (ADS)

    Zhang, Zhao; Liu, Juan; Jia, Jia; Li, Xin; Pan, Yijie; Han, Jian; Hu, Bin; Wang, Yongtian

    2013-12-01

    The real-time holographic display encounters heavy computational load of computer-generated holograms and precisely intensity modulation of 3D images reconstructed by phase-only holograms. In this study, we demonstrate a method for reducing memory usage and modulating the intensity in 3D holographic display. The proposed method can eliminate the redundant information of holograms by employing the non-uniform sampling technique. By combining with the novel look-up table method, 70% reduction in the storage amount can be reached. The gray-scale modulation of 3D images reconstructed by phase-only holograms can be extended either. We perform both numerical simulations and optical experiments to verify the practicability of this method, and the results match well with each other. It is believed that the proposed method can be used in 3D dynamic holographic display and design of the diffractive phase elements.

  14. A new approach of building 3D visualization framework for multimodal medical images display and computed assisted diagnosis

    NASA Astrophysics Data System (ADS)

    Li, Zhenwei; Sun, Jianyong; Zhang, Jianguo

    2012-02-01

    As more and more CT/MR studies are scanning with larger volume of data sets, more and more radiologists and clinician would like using PACS WS to display and manipulate these larger data sets of images with 3D rendering features. In this paper, we proposed a design method and implantation strategy to develop 3D image display component not only with normal 3D display functions but also with multi-modal medical image fusion as well as compute-assisted diagnosis of coronary heart diseases. The 3D component has been integrated into the PACS display workstation of Shanghai Huadong Hospital, and the clinical practice showed that it is easy for radiologists and physicians to use these 3D functions such as multi-modalities' (e.g. CT, MRI, PET, SPECT) visualization, registration and fusion, and the lesion quantitative measurements. The users were satisfying with the rendering speeds and quality of 3D reconstruction. The advantages of the component include low requirements for computer hardware, easy integration, reliable performance and comfortable application experience. With this system, the radiologists and the clinicians can manipulate with 3D images easily, and use the advanced visualization tools to facilitate their work with a PACS display workstation at any time.

  15. A Fast Parallel Simulation Code for Interaction between Proto-Planetary Disk and Embedded Proto-Planets: Implementation for 3D Code

    SciTech Connect

    Li, Shengtai; Li, Hui

    2012-06-14

    We develop a 3D simulation code for interaction between the proto-planetary disk and embedded proto-planets. The protoplanetary disk is treated as a three-dimensional (3D), self-gravitating gas whose motion is described by the locally isothermal Navier-Stokes equations in a spherical coordinate centered on the star. The differential equations for the disk are similar to those given in Kley et al. (2009) with a different gravitational potential that is defined in Nelson et al. (2000). The equations are solved by directional split Godunov method for the inviscid Euler equations plus operator-split method for the viscous source terms. We use a sub-cycling technique for the azimuthal sweep to alleviate the time step restriction. We also extend the FARGO scheme of Masset (2000) and modified in Li et al. (2001) to our 3D code to accelerate the transport in the azimuthal direction. Furthermore, we have implemented a reduced 2D (r, {theta}) and a fully 3D self-gravity solver on our uniform disk grid, which extends our 2D method (Li, Buoni, & Li 2008) to 3D. This solver uses a mode cut-off strategy and combines FFT in the azimuthal direction and direct summation in the radial and meridional direction. An initial axis-symmetric equilibrium disk is generated via iteration between the disk density profile and the 2D disk-self-gravity. We do not need any softening in the disk self-gravity calculation as we have used a shifted grid method (Li et al. 2008) to calculate the potential. The motion of the planet is limited on the mid-plane and the equations are the same as given in D'Angelo et al. (2005), which we adapted to the polar coordinates with a fourth-order Runge-Kutta solver. The disk gravitational force on the planet is assumed to evolve linearly with time between two hydrodynamics time steps. The Planetary potential acting on the disk is calculated accurately with a small softening given by a cubic-spline form (Kley et al. 2009). Since the torque is extremely sensitive to

  16. Particle entry through "Sash" groove simulated by Global 3D Electromagnetic Particle code with duskward IMF By

    NASA Astrophysics Data System (ADS)

    Yan, X.; Cai, D.; Nishikawa, K.; Lembege, B.

    2004-12-01

    We made our efforts to parallelize the global 3D HPF Electromagnetic particle model (EMPM) for several years and have also reported our meaningful simulation results that revealed the essential physics involved in interaction of the solar wind with the Earth's magnetosphere using this EMPM (Nishikawa et al., 1995; Nishikawa, 1997, 1998a, b, 2001, 2002) in our PC cluster and supercomputer(D.S. Cai et al., 2001, 2003). Sash patterns and related phenomena have been observed and reported in some satellite observations (Fujumoto et al. 1997; Maynard, 2001), and have motivated 3D MHD simulations (White and al., 1998). We also investigated it with our global 3D parallelized HPF EMPM with dawnward IMF By (K.-I. Nishikawa, 1998) and recently new simulation with dusk-ward IMF By was accomplished in the new VPP5000 supercomputer. In the new simulations performed on the new VPP5000 supercomputer of Tsukuba University, we used larger domain size, 305×205×205, smaller grid size (Δ ), 0.5R E(the radium of the Earth), more total particle number, 220,000,000 (about 8 pairs per cell). At first, we run this code until we get the so-called quasi-stationary status; After the quasi-stationary status was established, we applied a northward IMF (B z=0.2), and then wait until the IMF arrives around the magnetopuase. After the arrival of IMF, we begin to change the IMF from northward to duskward (IMF B y=-0.2). The results revealed that the groove structure at the day-side magnetopause, that causes particle entry into inner magnetosphere and the cross structure or S-structure at near magneto-tail are formed. Moreover, in contrast with MHD simulations, kinetic characteristic of this event is also analyzed self-consistently with this simulation. The new simulation provides new and more detailed insights for the observed sash event.

  17. 3D PiC code simulations for a laboratory experimental investigation of Auroral Kilometric Radiation mechanisms

    NASA Astrophysics Data System (ADS)

    Gillespie, K. M.; Speirs, D. C.; Ronald, K.; McConville, S. L.; Phelps, A. D. R.; Bingham, R.; Cross, A. W.; Robertson, C. W.; Whyte, C. G.; He, W.; Vorgul, I.; Cairns, R. A.; Kellett, B. J.

    2008-12-01

    Auroral Kilometric Radiation (AKR), occurs naturally in the polar regions of the Earth's magnetosphere where electrons are accelerated by electric fields into the increasing planetary magnetic dipole. Here conservation of the magnetic moment converts axial to rotational momentum forming a horseshoe distribution in velocity phase space. This distribution is unstable to cyclotron emission with radiation emitted in the X-mode. In a scaled laboratory reproduction of this process, a 75-85 keV electron beam of 5-40 A was magnetically compressed by a system of solenoids and emissions were observed for cyclotron frequencies of 4.42 GHz and 11.7 GHz resonating with near cut-off TE0,1 and TE0,3 modes, respectively. Here we compare these measurements with numerical predictions from the 3D PiC code KARAT. The 3D simulations accurately predicted the radiation modes and frequencies produced by the experiment. The predicted conversion efficiency between electron kinetic and wave field energy of around 1% is close to the experimental measurements and broadly consistent with quasi-linear theoretical analysis and geophysical observations.

  18. Error propagation in the computation of volumes in 3D city models with the Monte Carlo method

    NASA Astrophysics Data System (ADS)

    Biljecki, F.; Ledoux, H.; Stoter, J.

    2014-11-01

    This paper describes the analysis of the propagation of positional uncertainty in 3D city models to the uncertainty in the computation of their volumes. Current work related to error propagation in GIS is limited to 2D data and 2D GIS operations, especially of rasters. In this research we have (1) developed two engines, one that generates random 3D buildings in CityGML in multiple LODs, and one that simulates acquisition errors to the geometry; (2) performed an error propagation analysis on volume computation based on the Monte Carlo method; and (3) worked towards establishing a framework for investigating error propagation in 3D GIS. The results of the experiments show that a comparatively small error in the geometry of a 3D city model may cause significant discrepancies in the computation of its volume. This has consequences for several applications, such as in estimation of energy demand and property taxes. The contribution of this work is twofold: this is the first error propagation analysis in 3D city modelling, and the novel approach and the engines that we have created can be used for analysing most of 3D GIS operations, supporting related research efforts in the future.

  19. Computer codes developed and under development at Lewis

    NASA Technical Reports Server (NTRS)

    Chamis, Christos C.

    1992-01-01

    The objective of this summary is to provide a brief description of: (1) codes developed or under development at LeRC; and (2) the development status of IPACS with some typical early results. The computer codes that have been developed and/or are under development at LeRC are listed in the accompanying charts. This list includes: (1) the code acronym; (2) select physics descriptors; (3) current enhancements; and (4) present (9/91) code status with respect to its availability and documentation. The computer codes list is grouped by related functions such as: (1) composite mechanics; (2) composite structures; (3) integrated and 3-D analysis; (4) structural tailoring; and (5) probabilistic structural analysis. These codes provide a broad computational simulation infrastructure (technology base-readiness) for assessing the structural integrity/durability/reliability of propulsion systems. These codes serve two other very important functions: they provide an effective means of technology transfer; and they constitute a depository of corporate memory.

  20. Detectability of hepatic tumors during 3D post-processed ultrafast cone-beam computed tomography

    NASA Astrophysics Data System (ADS)

    Paul, Jijo; Vogl, Thomas J.; Chacko, Annamma

    2015-10-01

    To evaluate hepatic tumor detection using ultrafast cone-beam computed tomography (UCBCT) cross-sectional and 3D post-processed image datasets. 657 patients were examined using UCBCT during hepatic transarterial chemoembolization (TACE), and data were collected retrospectively from January 2012 to September 2014. Tumor detectability, diagnostic ability, detection accuracy and sensitivity were examined for different hepatic tumors using UCBCT cross-sectional, perfusion blood volume (PBV) and UCBCT-MRI (magnetic resonance imaging) fused image datasets. Appropriate statistical tests were used to compare collected sample data. Fused image data showed the significantly higher (all P  <  0.05) diagnostic ability for hepatic tumors compared to UCBCT or PBV image data. The detectability of small hepatic tumors (<5 mm) was significantly reduced (all P  <  0.05) using UCBCT cross-sectional images compared to MRI or fused image data; however, PBV improved tumor detectability using a color display. Fused image data produced 100% tumor sensitivity due to the simultaneous availability of MRI and UCBCT information during tumor diagnosis. Fused image data produced excellent hepatic tumor sensitivity, detectability and diagnostic ability compared to other datasets assessed. Fused image data is extremely reliable and useful compared to UCBCT cross-sectional or PBV image datasets to depict hepatic tumors during TACE. Partial anatomical visualization on cross-sectional images was compensated by fused image data during tumor diagnosis.

  1. GBM Volumetry using the 3D Slicer Medical Image Computing Platform

    PubMed Central

    Egger, Jan; Kapur, Tina; Fedorov, Andriy; Pieper, Steve; Miller, James V.; Veeraraghavan, Harini; Freisleben, Bernd; Golby, Alexandra J.; Nimsky, Christopher; Kikinis, Ron

    2013-01-01

    Volumetric change in glioblastoma multiforme (GBM) over time is a critical factor in treatment decisions. Typically, the tumor volume is computed on a slice-by-slice basis using MRI scans obtained at regular intervals. (3D)Slicer – a free platform for biomedical research – provides an alternative to this manual slice-by-slice segmentation process, which is significantly faster and requires less user interaction. In this study, 4 physicians segmented GBMs in 10 patients, once using the competitive region-growing based GrowCut segmentation module of Slicer, and once purely by drawing boundaries completely manually on a slice-by-slice basis. Furthermore, we provide a variability analysis for three physicians for 12 GBMs. The time required for GrowCut segmentation was on an average 61% of the time required for a pure manual segmentation. A comparison of Slicer-based segmentation with manual slice-by-slice segmentation resulted in a Dice Similarity Coefficient of 88.43 ± 5.23% and a Hausdorff Distance of 2.32 ± 5.23 mm. PMID:23455483

  2. High resolution 3D imaging of bump-bonds by means of synchrotron radiation computed laminography

    NASA Astrophysics Data System (ADS)

    Cecilia, A.; Hamann, E.; Koenig, T.; Xu, F.; Cheng, Y.; Helfen, L.; Ruat, M.; Scheel, M.; Zuber, M.; Baumbach, T.; Fauler, A.; Fiederle, M.

    2013-12-01

    During the flip-chip bonding process of a semiconductor sensor onto readout electronics, a formation of defects may take place, like solder joint displacements, voids, cracks, pores and bridges. This may result in blind spots on the detector, which are insensitive to photons and thus reduce the detector performance. In this work, the flip-chip interconnections of selected CdTe and GaAs Medipix detectors were investigated by synchrotron radiation computed laminography at a micrometer scale. The analysis of the volume rendering proved the presence of voids in the CdTe sensor flip-chip interconnections, with sizes between 3 μm and 9 μm. These voids can be harmful for the long term use of the device, because their presence weakens the adhesive strength between a contact and the readout electronics. Consequently, their formation needs to be avoided. The GaAs Medipix detectors investigated include two sensors that were produced with different flip-chip methods. The comparison of the 3D renderings of the bump-bond interconnections in the two GaAs sensors demonstrated the presence of a misalignment in the range of 5-12 μm between pixel passivation and bump-bonds in the detector produced with an older technique. In contrast to this, no misalignment was observed for the most recently produced detector. The only remarkable observation is the presence of ``satellites'' of solder that do not compromise the detector operation.

  3. Computed Tomography 3-D Imaging of the Metal Deformation Flow Path in Friction Stir Welding

    NASA Technical Reports Server (NTRS)

    Schneider, Judy; Beshears, Ronald; Nunes, Arthur C., Jr.

    2005-01-01

    In friction stir welding (FSW), a rotating threaded pin tool is inserted into a weld seam and literally stirs the edges of the seam together. To determine optimal processing parameters for producing a defect free weld, a better understanding of the resulting metal deformation flow path is required. Marker studies are the principal method of studying the metal deformation flow path around the FSW pin tool. In our study, we have used computed tomography (CT) scans to reveal the flow pattern of a lead wire embedded in a FSW weld seam. At the welding temperature of aluminum, the lead becomes molten and is carried with the macro-flow of the weld metal. By using CT images, a 3-dimensional (3D) image of the lead flow pattern can be reconstructed. CT imaging was found to be a convenient and comprehensive way of collecting and displaying tracer data. It marks an advance over previous more tedious and ambiguous radiographic/metallographic data collection methods.

  4. A study of the earth radiation budget using a 3D Monte-Carlo radiative transer code

    NASA Astrophysics Data System (ADS)

    Okata, M.; Nakajima, T.; Sato, Y.; Inoue, T.; Donovan, D. P.

    2013-12-01

    The purpose of this study is to evaluate the earth's radiation budget when data are available from satellite-borne active sensors, i.e. cloud profiling radar (CPR) and lidar, and a multi-spectral imager (MSI) in the project of the Earth Explorer/EarthCARE mission. For this purpose, we first developed forward and backward 3D Monte Carlo radiative transfer codes that can treat a broadband solar flux calculation including thermal infrared emission calculation by k-distribution parameters of Sekiguchi and Nakajima (2008). In order to construct the 3D cloud field, we tried the following three methods: 1) stochastic cloud generated by randomized optical thickness each layer distribution and regularly-distributed tilted clouds, 2) numerical simulations by a non-hydrostatic model with bin cloud microphysics model and 3) Minimum cloud Information Deviation Profiling Method (MIDPM) as explained later. As for the method-2 (numerical modeling method), we employed numerical simulation results of Californian summer stratus clouds simulated by a non-hydrostatic atmospheric model with a bin-type cloud microphysics model based on the JMA NHM model (Iguchi et al., 2008; Sato et al., 2009, 2012) with horizontal (vertical) grid spacing of 100m (20m) and 300m (20m) in a domain of 30km (x), 30km (y), 1.5km (z) and with a horizontally periodic lateral boundary condition. Two different cell systems were simulated depending on the cloud condensation nuclei (CCN) concentration. In the case of horizontal resolution of 100m, regionally averaged cloud optical thickness, , and standard deviation of COT, were 3.0 and 4.3 for pristine case and 8.5 and 7.4 for polluted case, respectively. In the MIDPM method, we first construct a library of pair of observed vertical profiles from active sensors and collocated imager products at the nadir footprint, i.e. spectral imager radiances, cloud optical thickness (COT), effective particle radius (RE) and cloud top temperature (Tc). We then select a

  5. Estimating Mass Properties of Dinosaurs Using Laser Imaging and 3D Computer Modelling

    PubMed Central

    Bates, Karl T.; Manning, Phillip L.; Hodgetts, David; Sellers, William I.

    2009-01-01

    Body mass reconstructions of extinct vertebrates are most robust when complete to near-complete skeletons allow the reconstruction of either physical or digital models. Digital models are most efficient in terms of time and cost, and provide the facility to infinitely modify model properties non-destructively, such that sensitivity analyses can be conducted to quantify the effect of the many unknown parameters involved in reconstructions of extinct animals. In this study we use laser scanning (LiDAR) and computer modelling methods to create a range of 3D mass models of five specimens of non-avian dinosaur; two near-complete specimens of Tyrannosaurus rex, the most complete specimens of Acrocanthosaurus atokensis and Strutiomimum sedens, and a near-complete skeleton of a sub-adult Edmontosaurus annectens. LiDAR scanning allows a full mounted skeleton to be imaged resulting in a detailed 3D model in which each bone retains its spatial position and articulation. This provides a high resolution skeletal framework around which the body cavity and internal organs such as lungs and air sacs can be reconstructed. This has allowed calculation of body segment masses, centres of mass and moments or inertia for each animal. However, any soft tissue reconstruction of an extinct taxon inevitably represents a best estimate model with an unknown level of accuracy. We have therefore conducted an extensive sensitivity analysis in which the volumes of body segments and respiratory organs were varied in an attempt to constrain the likely maximum plausible range of mass parameters for each animal. Our results provide wide ranges in actual mass and inertial values, emphasizing the high level of uncertainty inevitable in such reconstructions. However, our sensitivity analysis consistently places the centre of mass well below and in front of hip joint in each animal, regardless of the chosen combination of body and respiratory structure volumes. These results emphasize that future

  6. Estimating mass properties of dinosaurs using laser imaging and 3D computer modelling.

    PubMed

    Bates, Karl T; Manning, Phillip L; Hodgetts, David; Sellers, William I

    2009-01-01

    Body mass reconstructions of extinct vertebrates are most robust when complete to near-complete skeletons allow the reconstruction of either physical or digital models. Digital models are most efficient in terms of time and cost, and provide the facility to infinitely modify model properties non-destructively, such that sensitivity analyses can be conducted to quantify the effect of the many unknown parameters involved in reconstructions of extinct animals. In this study we use laser scanning (LiDAR) and computer modelling methods to create a range of 3D mass models of five specimens of non-avian dinosaur; two near-complete specimens of Tyrannosaurus rex, the most complete specimens of Acrocanthosaurus atokensis and Strutiomimum sedens, and a near-complete skeleton of a sub-adult Edmontosaurus annectens. LiDAR scanning allows a full mounted skeleton to be imaged resulting in a detailed 3D model in which each bone retains its spatial position and articulation. This provides a high resolution skeletal framework around which the body cavity and internal organs such as lungs and air sacs can be reconstructed. This has allowed calculation of body segment masses, centres of mass and moments or inertia for each animal. However, any soft tissue reconstruction of an extinct taxon inevitably represents a best estimate model with an unknown level of accuracy. We have therefore conducted an extensive sensitivity analysis in which the volumes of body segments and respiratory organs were varied in an attempt to constrain the likely maximum plausible range of mass parameters for each animal. Our results provide wide ranges in actual mass and inertial values, emphasizing the high level of uncertainty inevitable in such reconstructions. However, our sensitivity analysis consistently places the centre of mass well below and in front of hip joint in each animal, regardless of the chosen combination of body and respiratory structure volumes. These results emphasize that future

  7. Computer codes for RF cavity design

    SciTech Connect

    Ko, K.

    1992-08-01

    In RF cavity design, numerical modeling is assuming an increasingly important role with the help of sophisticated computer codes and powerful yet affordable computers. A description of the cavity codes in use in the accelerator community has been given previously. The present paper will address the latest developments and discuss their applications to cavity toning and matching problems.

  8. Computer Code Aids Design Of Wings

    NASA Technical Reports Server (NTRS)

    Carlson, Harry W.; Darden, Christine M.

    1993-01-01

    AERO2S computer code developed to aid design engineers in selection and evaluation of aerodynamically efficient wing/canard and wing/horizontal-tail configurations that includes simple hinged-flap systems. Code rapidly estimates longitudinal aerodynamic characteristics of conceptual airplane lifting-surface arrangements. Developed in FORTRAN V on CDC 6000 computer system, and ported to MS-DOS environment.

  9. Convergence acceleration of the Proteus computer code with multigrid methods

    NASA Technical Reports Server (NTRS)

    Demuren, A. O.; Ibraheem, S. O.

    1995-01-01

    This report presents the results of a study to implement convergence acceleration techniques based on the multigrid concept in the two-dimensional and three-dimensional versions of the Proteus computer code. The first section presents a review of the relevant literature on the implementation of the multigrid methods in computer codes for compressible flow analysis. The next two sections present detailed stability analysis of numerical schemes for solving the Euler and Navier-Stokes equations, based on conventional von Neumann analysis and the bi-grid analysis, respectively. The next section presents details of the computational method used in the Proteus computer code. Finally, the multigrid implementation and applications to several two-dimensional and three-dimensional test problems are presented. The results of the present study show that the multigrid method always leads to a reduction in the number of iterations (or time steps) required for convergence. However, there is an overhead associated with the use of multigrid acceleration. The overhead is higher in 2-D problems than in 3-D problems, thus overall multigrid savings in CPU time are in general better in the latter. Savings of about 40-50 percent are typical in 3-D problems, but they are about 20-30 percent in large 2-D problems. The present multigrid method is applicable to steady-state problems and is therefore ineffective in problems with inherently unstable solutions.

  10. Rn3D: A finite element code for simulating gas flow and radon transport in variably saturated, nonisothermal porous media. User`s manual, Version 1.0

    SciTech Connect

    Holford, D.J.

    1994-01-01

    This document is a user`s manual for the Rn3D finite element code. Rn3D was developed to simulate gas flow and radon transport in variably saturated, nonisothermal porous media. The Rn3D model is applicable to a wide range of problems involving radon transport in soil because it can simulate either steady-state or transient flow and transport in one-, two- or three-dimensions (including radially symmetric two-dimensional problems). The porous materials may be heterogeneous and anisotropic. This manual describes all pertinent mathematics related to the governing, boundary, and constitutive equations of the model, as well as the development of the finite element equations used in the code. Instructions are given for constructing Rn3D input files and executing the code, as well as a description of all output files generated by the code. Five verification problems are given that test various aspects of code operation, complete with example input files, FORTRAN programs for the respective analytical solutions, and plots of model results. An example simulation is presented to illustrate the type of problem Rn3D is designed to solve. Finally, instructions are given on how to convert Rn3D to simulate systems other than radon, air, and water.

  11. Comparison of a 3-D multi-group SN particle transport code with Monte Carlo for intracavitary brachytherapy of the cervix uteri.

    PubMed

    Gifford, Kent A; Wareing, Todd A; Failla, Gregory; Horton, John L; Eifel, Patricia J; Mourtada, Firas

    2010-01-01

    A patient dose distribution was calculated by a 3D multi-group S N particle transport code for intracavitary brachytherapy of the cervix uteri and compared to previously published Monte Carlo results. A Cs-137 LDR intracavitary brachytherapy CT data set was chosen from our clinical database. MCNPX version 2.5.c, was used to calculate the dose distribution. A 3D multi-group S N particle transport code, Attila version 6.1.1 was used to simulate the same patient. Each patient applicator was built in SolidWorks, a mechanical design package, and then assembled with a coordinate transformation and rotation for the patient. The SolidWorks exported applicator geometry was imported into Attila for calculation. Dose matrices were overlaid on the patient CT data set. Dose volume histograms and point doses were compared. The MCNPX calculation required 14.8 hours, whereas the Attila calculation required 22.2 minutes on a 1.8 GHz AMD Opteron CPU. Agreement between Attila and MCNPX dose calculations at the ICRU 38 points was within +/- 3%. Calculated doses to the 2 cc and 5 cc volumes of highest dose differed by not more than +/- 1.1% between the two codes. Dose and DVH overlays agreed well qualitatively. Attila can calculate dose accurately and efficiently for this Cs-137 CT-based patient geometry. Our data showed that a three-group cross-section set is adequate for Cs-137 computations. Future work is aimed at implementing an optimized version of Attila for radiotherapy calculations. PMID:20160682

  12. Auto-masked 2D/3D image registration and its validation with clinical cone-beam computed tomography

    NASA Astrophysics Data System (ADS)

    Steininger, P.; Neuner, M.; Weichenberger, H.; Sharp, G. C.; Winey, B.; Kametriser, G.; Sedlmayer, F.; Deutschmann, H.

    2012-07-01

    Image-guided alignment procedures in radiotherapy aim at minimizing discrepancies between the planned and the real patient setup. For that purpose, we developed a 2D/3D approach which rigidly registers a computed tomography (CT) with two x-rays by maximizing the agreement in pixel intensity between the x-rays and the corresponding reconstructed radiographs from the CT. Moreover, the algorithm selects regions of interest (masks) in the x-rays based on 3D segmentations from the pre-planning stage. For validation, orthogonal x-ray pairs from different viewing directions of 80 pelvic cone-beam CT (CBCT) raw data sets were used. The 2D/3D results were compared to corresponding standard 3D/3D CBCT-to-CT alignments. Outcome over 8400 2D/3D experiments showed that parametric errors in root mean square were <0.18° (rotations) and <0.73 mm (translations), respectively, using rank correlation as intensity metric. This corresponds to a mean target registration error, related to the voxels of the lesser pelvis, of <2 mm in 94.1% of the cases. From the results we conclude that 2D/3D registration based on sequentially acquired orthogonal x-rays of the pelvis is a viable alternative to CBCT-based approaches if rigid alignment on bony anatomy is sufficient, no volumetric intra-interventional data set is required and the expected error range fits the individual treatment prescription.

  13. Auto-masked 2D/3D image registration and its validation with clinical cone-beam computed tomography.

    PubMed

    Steininger, P; Neuner, M; Weichenberger, H; Sharp, G C; Winey, B; Kametriser, G; Sedlmayer, F; Deutschmann, H

    2012-07-01

    Image-guided alignment procedures in radiotherapy aim at minimizing discrepancies between the planned and the real patient setup. For that purpose, we developed a 2D/3D approach which rigidly registers a computed tomography (CT) with two x-rays by maximizing the agreement in pixel intensity between the x-rays and the corresponding reconstructed radiographs from the CT. Moreover, the algorithm selects regions of interest (masks) in the x-rays based on 3D segmentations from the pre-planning stage. For validation, orthogonal x-ray pairs from different viewing directions of 80 pelvic cone-beam CT (CBCT) raw data sets were used. The 2D/3D results were compared to corresponding standard 3D/3D CBCT-to-CT alignments. Outcome over 8400 2D/3D experiments showed that parametric errors in root mean square were <0.18° (rotations) and <0.73 mm (translations), respectively, using rank correlation as intensity metric. This corresponds to a mean target registration error, related to the voxels of the lesser pelvis, of <2 mm in 94.1% of the cases. From the results we conclude that 2D/3D registration based on sequentially acquired orthogonal x-rays of the pelvis is a viable alternative to CBCT-based approaches if rigid alignment on bony anatomy is sufficient, no volumetric intra-interventional data set is required and the expected error range fits the individual treatment prescription. PMID:22705709

  14. Volume accumulator design analysis computer codes

    NASA Technical Reports Server (NTRS)

    Whitaker, W. D.; Shimazaki, T. T.

    1973-01-01

    The computer codes, VANEP and VANES, were written and used to aid in the design and performance calculation of the volume accumulator units (VAU) for the 5-kwe reactor thermoelectric system. VANEP computes the VAU design which meets the primary coolant loop VAU volume and pressure performance requirements. VANES computes the performance of the VAU design, determined from the VANEP code, at the conditions of the secondary coolant loop. The codes can also compute the performance characteristics of the VAU's under conditions of possible modes of failure which still permit continued system operation.

  15. electromagnetics, eddy current, computer codes

    2002-03-12

    TORO Version 4 is designed for finite element analysis of steady, transient and time-harmonic, multi-dimensional, quasi-static problems in electromagnetics. The code allows simulation of electrostatic fields, steady current flows, magnetostatics and eddy current problems in plane or axisymmetric, two-dimensional geometries. TORO is easily coupled to heat conduction and solid mechanics codes to allow multi-physics simulations to be performed.

  16. Computer numerical control (CNC) lithography: light-motion synchronized UV-LED lithography for 3D microfabrication

    NASA Astrophysics Data System (ADS)

    Kim, Jungkwun; Yoon, Yong-Kyu; Allen, Mark G.

    2016-03-01

    This paper presents a computer-numerical-controlled ultraviolet light-emitting diode (CNC UV-LED) lithography scheme for three-dimensional (3D) microfabrication. The CNC lithography scheme utilizes sequential multi-angled UV light exposures along with a synchronized switchable UV light source to create arbitrary 3D light traces, which are transferred into the photosensitive resist. The system comprises a switchable, movable UV-LED array as a light source, a motorized tilt-rotational sample holder, and a computer-control unit. System operation is such that the tilt-rotational sample holder moves in a pre-programmed routine, and the UV-LED is illuminated only at desired positions of the sample holder during the desired time period, enabling the formation of complex 3D microstructures. This facilitates easy fabrication of complex 3D structures, which otherwise would have required multiple manual exposure steps as in the previous multidirectional 3D UV lithography approach. Since it is batch processed, processing time is far less than that of the 3D printing approach at the expense of some reduction in the degree of achievable 3D structure complexity. In order to produce uniform light intensity from the arrayed LED light source, the UV-LED array stage has been kept rotating during exposure. UV-LED 3D fabrication capability was demonstrated through a plurality of complex structures such as V-shaped micropillars, micropanels, a micro-‘hi’ structure, a micro-‘cat’s claw,’ a micro-‘horn,’ a micro-‘calla lily,’ a micro-‘cowboy’s hat,’ and a micro-‘table napkin’ array.

  17. MiR-10a* up-regulates coxsackievirus B3 biosynthesis by targeting the 3D-coding sequence

    PubMed Central

    Tong, Lei; Lin, Lexun; Wu, Shuo; Guo, Zhiwei; Wang, Tianying; Qin, Ying; Wang, Ruixue; Zhong, Xiaoyan; Wu, Xia; Wang, Yan; Luan, Tian; Wang, Qiang; Li, Yunxia; Chen, Xiaofeng; Zhang, Fengmin; Zhao, Wenran; Zhong, Zhaohua

    2013-01-01

    MicroRNAs (miRNAs) are small non-coding RNAs that can posttranscriptionally regulate gene expression by targeting messenger RNAs. During miRNA biogenesis, the star strand (miRNA*) is generally degraded to a low level in the cells. However, certain miRNA* express abundantly and can be recruited into the silencing complex to regulate gene expression. Most miRNAs function as suppressive regulators on gene expression. Group B coxsackieviruses (CVB) are the major pathogens of human viral myocarditis and dilated cardiomyopathy. CVB genome is a positive-sense, single-stranded RNA. Our previous study shows that miR-342-5p can suppress CVB biogenesis by targeting its 2C-coding sequence. In this study, we found that the miR-10a duplex could significantly up-regulate the biosynthesis of CVB type 3 (CVB3). Further study showed that it was the miR-10a star strand (miR-10a*) that augmented CVB3 biosynthesis. Site-directed mutagenesis showed that the miR-10a* target was located in the nt6818–nt6941 sequence of the viral 3D-coding region. MiR-10a* was detectable in the cardiac tissues of suckling Balb/c mice, suggesting that miR-10a* may impact CVB3 replication during its cardiac infection. Taken together, these data for the first time show that miRNA* can positively modulate gene expression. MiR-10a* might be involved in the CVB3 cardiac pathogenesis. PMID:23389951

  18. Conceptual detector development and Monte Carlo simulation of a novel 3D breast computed tomography system

    NASA Astrophysics Data System (ADS)

    Ziegle, Jens; Müller, Bernhard H.; Neumann, Bernd; Hoeschen, Christoph

    2016-03-01

    A new 3D breast computed tomography (CT) system is under development enabling imaging of microcalcifications in a fully uncompressed breast including posterior chest wall tissue. The system setup uses a steered electron beam impinging on small tungsten targets surrounding the breast to emit X-rays. A realization of the corresponding detector concept is presented in this work and it is modeled through Monte Carlo simulations in order to quantify first characteristics of transmission and secondary photons. The modeled system comprises a vertical alignment of linear detectors hold by a case that also hosts the breast. Detectors are separated by gaps to allow the passage of X-rays towards the breast volume. The detectors located directly on the opposite side of the gaps detect incident X-rays. Mechanically moving parts in an imaging system increase the duration of image acquisition and thus can cause motion artifacts. So, a major advantage of the presented system design is the combination of the fixed detectors and the fast steering electron beam which enable a greatly reduced scan time. Thereby potential motion artifacts are reduced so that the visualization of small structures such as microcalcifications is improved. The result of the simulation of a single projection shows high attenuation by parts of the detector electronics causing low count levels at the opposing detectors which would require a flat field correction, but it also shows a secondary to transmission ratio of all counted X-rays of less than 1 percent. Additionally, a single slice with details of various sizes was reconstructed using filtered backprojection. The smallest detail which was still visible in the reconstructed image has a size of 0.2mm.

  19. 3D printing of preclinical X-ray computed tomographic data sets.

    PubMed

    Doney, Evan; Krumdick, Lauren A; Diener, Justin M; Wathen, Connor A; Chapman, Sarah E; Stamile, Brian; Scott, Jeremiah E; Ravosa, Matthew J; Van Avermaete, Tony; Leevy, W Matthew

    2013-01-01

    Three-dimensional printing allows for the production of highly detailed objects through a process known as additive manufacturing. Traditional, mold-injection methods to create models or parts have several limitations, the most important of which is a difficulty in making highly complex products in a timely, cost-effective manner.(1) However, gradual improvements in three-dimensional printing technology have resulted in both high-end and economy instruments that are now available for the facile production of customized models.(2) These printers have the ability to extrude high-resolution objects with enough detail to accurately represent in vivo images generated from a preclinical X-ray CT scanner. With proper data collection, surface rendering, and stereolithographic editing, it is now possible and inexpensive to rapidly produce detailed skeletal and soft tissue structures from X-ray CT data. Even in the early stages of development, the anatomical models produced by three-dimensional printing appeal to both educators and researchers who can utilize the technology to improve visualization proficiency. (3, 4) The real benefits of this method result from the tangible experience a researcher can have with data that cannot be adequately conveyed through a computer screen. The translation of pre-clinical 3D data to a physical object that is an exact copy of the test subject is a powerful tool for visualization and communication, especially for relating imaging research to students, or those in other fields. Here, we provide a detailed method for printing plastic models of bone and organ structures derived from X-ray CT scans utilizing an Albira X-ray CT system in conjunction with PMOD, ImageJ, Meshlab, Netfabb, and ReplicatorG software packages. PMID:23542702

  20. Detection of bone erosions in early rheumatoid arthritis: 3D ultrasonography versus computed tomography.

    PubMed

    Peluso, G; Bosello, S L; Gremese, E; Mirone, L; Di Gregorio, F; Di Molfetta, V; Pirronti, T; Ferraccioli, G

    2015-07-01

    Three-dimensional (3D) volumetric ultrasonography (US) is an interesting tool that could improve the traditional approach to musculoskeletal US in rheumatology, due to its virtual operator independence and reduced examination time. The aim of this study was to investigate the performance of 3DUS in the detection of bone erosions in hand and wrist joints of early rheumatoid arthritis (ERA) patients, with computed tomography (CT) as the reference method. Twenty ERA patients without erosions on standard radiography of hands and wrists underwent 3DUS and CT evaluation of eleven joints: radiocarpal, intercarpal, ulnocarpal, second to fifth metacarpo-phalangeal (MCP), and second to fifth proximal interphalangeal (PIP) joints of dominant hand. Eleven (55.0%) patients were erosive with CT and ten of them were erosive also at 3DUS evaluation. In five patients, 3DUS identified cortical breaks that were not erosions at CT evaluation. Considering CT as the gold standard to identify erosive patients, the 3DUS sensitivity, specificity, PPV, and NPV were 0.9, 0.55, 0.71, and 0.83, respectively. A total of 32 erosions were detected with CT, 15 of them were also observed at the same sites with 3DUS, whereas 17 were not seen on 3DUS evaluation. The majority of these 3DUS false-negative erosions were in the wrist joints. Furthermore, 18 erosions recorded by 3DUS were false positive. The majority of these 3DUS false-positive erosions were located at PIP joints. This study underlines the limits of 3DUS in detecting individual bone erosion, mostly at the wrist, despite the good sensitivity in identifying erosive patients. PMID:26091903

  1. Network Coding for Function Computation

    ERIC Educational Resources Information Center

    Appuswamy, Rathinakumar

    2011-01-01

    In this dissertation, the following "network computing problem" is considered. Source nodes in a directed acyclic network generate independent messages and a single receiver node computes a target function f of the messages. The objective is to maximize the average number of times f can be computed per network usage, i.e., the "computing…

  2. Development and application of a ray-tracing code integrating with 3D equilibrium mapping in LHD ECH experiments

    NASA Astrophysics Data System (ADS)

    Tsujimura, T., Ii; Kubo, S.; Takahashi, H.; Makino, R.; Seki, R.; Yoshimura, Y.; Igami, H.; Shimozuma, T.; Ida, K.; Suzuki, C.; Emoto, M.; Yokoyama, M.; Kobayashi, T.; Moon, C.; Nagaoka, K.; Osakabe, M.; Kobayashi, S.; Ito, S.; Mizuno, Y.; Okada, K.; Ejiri, A.; Mutoh, T.

    2015-11-01

    The central electron temperature has successfully reached up to 7.5 keV in large helical device (LHD) plasmas with a central high-ion temperature of 5 keV and a central electron density of 1.3× {{10}19} m-3. This result was obtained by heating with a newly-installed 154 GHz gyrotron and also the optimisation of injection geometry in electron cyclotron heating (ECH). The optimisation was carried out by using the ray-tracing code ‘LHDGauss’, which was upgraded to include the rapid post-processing three-dimensional (3D) equilibrium mapping obtained from experiments. For ray-tracing calculations, LHDGauss can automatically read the relevant data registered in the LHD database after a discharge, such as ECH injection settings (e.g. Gaussian beam parameters, target positions, polarisation and ECH power) and Thomson scattering diagnostic data along with the 3D equilibrium mapping data. The equilibrium map of the electron density and temperature profiles are then extrapolated into the region outside the last closed flux surface. Mode purity, or the ratio between the ordinary mode and the extraordinary mode, is obtained by calculating the 1D full-wave equation along the direction of the rays from the antenna to the absorption target point. Using the virtual magnetic flux surfaces, the effects of the modelled density profiles and the magnetic shear at the peripheral region with a given polarisation are taken into account. Power deposition profiles calculated for each Thomson scattering measurement timing are registered in the LHD database. The adjustment of the injection settings for the desired deposition profile from the feedback provided on a shot-by-shot basis resulted in an effective experimental procedure.

  3. Programmer's Guide for Subroutine PRNT3D. Physical Processes in Terrestrial and Aquatic Ecosystems, Computer Programs and Graphics Capabilities.

    ERIC Educational Resources Information Center

    Gales, Larry

    These materials were designed to be used by life science students for instruction in the application of physical theory to ecosystem operation. Most modules contain computer programs which are built around a particular application of a physical process. PRNT3D is a subroutine package which generates a variety of printed plot displays. The displays…

  4. User's Guide for Subroutine PLOT3D. Physical Processes in Terrestrial and Aquatic Ecosystems, Computer Programs and Graphics Capabilities.

    ERIC Educational Resources Information Center

    Gales, Larry

    This module is part of a series designed to be used by life science students for instruction in the application of physical theory to ecosystem operation. Most modules contain computer programs which are built around a particular application of a physical process. PLOT3D is a subroutine package which generates a variety of three dimensional hidden…

  5. Programmer's Guide for Subroutine PLOT3D. Physical Processes in Terrestrial and Aquatic Ecosystems, Computer Programs and Graphics Capabilities.

    ERIC Educational Resources Information Center

    Gales, Larry

    This module is part of a series designed to be used by life science students for instruction in the application of physical theory to ecosystem operation. Most modules contain computer programs which are built around a particular application of a physical process. PLOT3D is a subroutine package which generates a variety of three-dimensional hidden…

  6. User's Guide for Subroutine PRNT3D. Physical Processes in Terrestrial and Aquatic Ecosystems, Computer Programs and Graphics Capabilities.

    ERIC Educational Resources Information Center

    Gales, Larry

    These materials were designed to be used by life science students for instruction in the application of physical theory to ecosystem operation. Most modules contain computer programs which are built around a particular application of a physical process. PRNT3D is a subroutine package which generates a variety of printer plot displays. The displays…

  7. DEVELOPMENT OF 3-D COMPUTER MODELS OF HUMAN LUNG MORPHOLOGY FOR IMPROOVED RISK ASSESSMENT OF INHALED PARTICULATE MATTER

    EPA Science Inventory

    DEVELOPMENT OF 3-D COMPUTER MODELS OF HUMAN LUNG MORPHOLOGY FOR IMPROVED RISK ASSESSMENT OF INHALED PARTICULATE MATTER

    Jeffry D. Schroeter, Curriculum in Toxicology, University of North Carolina, Chapel Hill, NC 27599; Ted B. Martonen, ETD, NHEERL, USEPA, RTP, NC 27711; Do...

  8. Particle entry through sash in the magnetopause with a dawndard IMF as simulated by a 3-D EM particle code

    NASA Astrophysics Data System (ADS)

    Cai, D.; Yan, X.; Lembege, B.; Nishikawa, K.

    2003-12-01

    We report a new progress in the long-term effort to represent the global interaction of the solar wind with the Earth's magnetosphere using a three-dimensional electromagnetic particle code with the improved resolutions using the HPF Tristan code. After a quasi-steady state is established with an unmagnetized solar wind we gradually switch on a northward interplanetary magnetic field (IMF), which causes a magnetic reconnection at the nightside cusps and the magnetosphere to be depolarized. In the case that the northward IMF is switched gradually to dawnward, there is no signature of reconnection in the near-Earth magnetotail as in the case with the southward turning. On the contrary analysis of magnetic fields in the magnetopause confirms a signature of magnetic reconnection at both the dawnside and duskside. And the plasma sheet in the near-Earth magnetotail clearly thins as in the case of southward turning. Arrival of dawnward IMF to the magnetopause creates a reconnection groove which cause particle entry into the deep region of the magnetosphere via field lines that go near the magnetopause. This deep connection is more fully recognized tailward of Earth. The flank weak-field fan joins onto the plasma sheet and the current sheet to form a geometrical feature called the cross-tail S that structurally integrates the magnetopause and the tail interior. This structure contributes to direct plasma entry between the magnetosheath to the inner magnetosphere and plasma sheet, in which the entry process heats the magnetosheath plasma to plasma sheet temperatures. These phenomena have been found by Cluster observations. Further investigation with Cluster observations will provide new insights for unsolved problems such as hot flow anomalies (HFAs), substorms, and storm-substorm relationship. 3-D movies with sash structure will be presented at the meeting.

  9. Recent Improvement of Measurement Instrumentation to Supervise Nuclear Operations and to Contribute Input Data to 3D Simulation Code - 13289

    SciTech Connect

    Mahe, Charly; Chabal, Caroline

    2013-07-01

    The CEA has developed many compact characterization tools to follow sensitive operations in a nuclear environment. Usually, these devices are made to carry out radiological inventories, to prepare nuclear interventions or to supervise some special operations. These in situ measurement techniques mainly take place at different stages of clean-up operations and decommissioning projects, but they are also in use to supervise sensitive operations when the nuclear plant is still operating. In addition to this, such tools are often associated with robots to access very highly radioactive areas, and thus can be used in accident situations. Last but not least, the radiological data collected can be entered in 3D calculation codes used to simulate the doses absorbed by workers in real time during operations in a nuclear environment. Faced with these ever-greater needs, nuclear measurement instrumentation always has to involve on-going improvement processes. Firstly, this paper will describe the latest developments and results obtained in both gamma and alpha imaging techniques. The gamma camera has been used by the CEA since the 1990's and several changes have made this device more sensitive, more compact and more competitive for nuclear plant operations. It is used to quickly identify hot spots, locating irradiating sources from 50 keV to 1500 keV. Several examples from a wide field of applications will be presented, together with the very latest developments. The alpha camera is a new camera used to see invisible alpha contamination on several kinds of surfaces. The latest results obtained allow real time supervision of a glove box cleaning operation (for {sup 241}Am contamination). The detection principle as well as the main trials and results obtained will be presented. Secondly, this paper will focus on in situ gamma spectrometry methods developed by the CEA with compact gamma spectrometry probes (CdZnTe, LaBr{sub 3}, NaI, etc.). The radiological data collected is used

  10. RT3D tutorials for GMS users

    SciTech Connect

    Clement, T.P.; Jones, N.L.

    1998-02-01

    RT3D (Reactive Transport in 3-Dimensions) is a computer code that solves coupled partial differential equations that describe reactive-flow and transport of multiple mobile and/or immobile species in a three dimensional saturated porous media. RT3D was developed from the single-species transport code, MT3D (DoD-1.5, 1997 version). As with MT3D, RT3D also uses the USGS groundwater flow model MODFLOW for computing spatial and temporal variations in groundwater head distribution. This report presents a set of tutorial problems that are designed to illustrate how RT3D simulations can be performed within the Department of Defense Groundwater Modeling System (GMS). GMS serves as a pre- and post-processing interface for RT3D. GMS can be used to define all the input files needed by RT3D code, and later the code can be launched from within GMS and run as a separate application. Once the RT3D simulation is completed, the solution can be imported to GMS for graphical post-processing. RT3D v1.0 supports several reaction packages that can be used for simulating different types of reactive contaminants. Each of the tutorials, described below, provides training on a different RT3D reaction package. Each reaction package has different input requirements, and the tutorials are designed to describe these differences. Furthermore, the tutorials illustrate the various options available in GMS for graphical post-processing of RT3D results. Users are strongly encouraged to complete the tutorials before attempting to use RT3D and GMS on a routine basis.

  11. Effective Permeability of Fractured Rocks by Analytical Methods: A 3D Computational Study

    NASA Astrophysics Data System (ADS)

    Sævik, P. N.; Berre, I.; Jakobsen, M.; Lien, M.

    2013-12-01

    Analytical upscaling methods have been proposed in the literature to predict the effective hydraulic permeability of a fractured rock from its micro-scale parameters (fracture aperture, fracture orientation, fracture content, etc.). In this presentation, we put special emphasis on three effective medium methods (the symmetric and asymmetric self-consistent methods, and the differential method), and evaluate their accuracy for a wide range of parameter values. The analytical predictions are computed using our recently developed effective medium formulations, which are specifically adapted for fractured media. Compared to previous formulations, the new expressions have improved numerical stability properties, and require fewer input parameters. To assess their accuracy, the analytical predictions have been compared with 3D finite element simulations. Specifically, we generated realizations of several different fracture geometries, each consisting of 102 fractures within a unit cube. We applied unit potential difference on two opposing sides, and no-flux conditions on the remaining sides. A commercial finite-element solver was used to calculate the mean flux, from which the effective conductivity was found. This process was repeated for fracture densities up to ɛ = 1.0. Also, a wide range of fracture permeabilities was considered, from completely blocking to infinitely permeable fractures. The results were used to determine the range of applicability for each analytical method, which excels in different regions of the parameter space. For blocking fractures, the differential method is very accurate throughout the investigated parameter range. The symmetric self-consistent method also agrees well with the numerical results on sealed fractures, while the asymmetric self-consistent method is more unreliable. For permeable fractures, the performance of the methods depends on the dimensionless quantity λ = (Kfrac a)/(r Kmat ), describing the contrast between fracture and

  12. Accuracy and reliability of measurements obtained from computed tomography 3D volume rendered images.

    PubMed

    Stull, Kyra E; Tise, Meredith L; Ali, Zabiullah; Fowler, David R

    2014-05-01

    Forensic pathologists commonly use computed tomography (CT) images to assist in determining the cause and manner of death as well as for mass disaster operations. Even though the design of the CT machine does not inherently produce distortion, most techniques within anthropology rely on metric variables, thus concern exists regarding the accuracy of CT images reflecting an object's true dimensions. Numerous researchers have attempted to validate the use of CT images, however the comparisons have only been conducted on limited elements and/or comparisons were between measurements taken from a dry element and measurements taken from the 3D-CT image of the same dry element. A full-body CT scan was performed prior to autopsy at the Office of the Chief Medical Examiner for the State of Maryland. Following autopsy, the remains were processed to remove all soft tissues and the skeletal elements were subject to an additional CT scan. Percent differences and Bland-Altman plots were used to assess the accuracy between osteometric variables obtained from the dry skeletal elements and from CT images with and without soft tissues. An additional seven crania were scanned, measured by three observers, and the reliability was evaluated by technical error of measurement (TEM) and relative technical error of measurement (%TEM). Average percent differences between the measurements obtained from the three data sources ranged from 1.4% to 2.9%. Bland-Altman plots illustrated the two sets of measurements were generally within 2mm for each comparison between data sources. Intra-observer TEM and %TEM for three observers and all craniometric variables ranged between 0.46mm and 0.77mm and 0.56% and 1.06%, respectively. The three-way inter-observer TEM and %TEM for craniometric variables was 2.6mm and 2.26%, respectively. Variables that yielded high error rates were orbital height, orbital breadth, inter-orbital breadth and parietal chord. Overall, minimal differences were found among the

  13. 3D-Trajectories Adopted by Coding and Regulatory DNA Elements: First-Passage Times for Genomic Interactions

    PubMed Central

    Lucas, Joseph S.; Zhang, Yaojun; Dudko, Olga K.; Murre, Cornelis

    2014-01-01

    SUMMARY During B lymphocyte development, immunoglobulin heavy chain variable (VH), diversity (DH) and joining (JH) segments assemble to generate a diverse antigen receptor repertoire. Here we have marked the distal VH and DH-JH-Eμ regions with Tet-operator binding sites and traced their 3D-trajectories in pro-B cells transduced with a retrovirus encoding Tet-repressor-EGFP. We found that these elements displayed fractional Langevin motion (fLm) due to the viscoelastic hindrance from the surrounding network of proteins and chromatin fibers. Using fractional Langevin dynamics modeling, we found that, with high probability, DHJH elements reach a VH element within minutes. Spatial confinement emerged as the dominant parameter that determined the frequency of such encounters. We propose that the viscoelastic nature of the nuclear environment causes coding elements and regulatory elements to bounce back and forth in a spring-like fashion until specific genomic interactions are established and that spatial confinement of topological domains largely controls first-passage times for genomic interactions. PMID:24998931

  14. Computer Code for Nanostructure Simulation

    NASA Technical Reports Server (NTRS)

    Filikhin, Igor; Vlahovic, Branislav

    2009-01-01

    Due to their small size, nanostructures can have stress and thermal gradients that are larger than any macroscopic analogue. These gradients can lead to specific regions that are susceptible to failure via processes such as plastic deformation by dislocation emission, chemical debonding, and interfacial alloying. A program has been developed that rigorously simulates and predicts optoelectronic properties of nanostructures of virtually any geometrical complexity and material composition. It can be used in simulations of energy level structure, wave functions, density of states of spatially configured phonon-coupled electrons, excitons in quantum dots, quantum rings, quantum ring complexes, and more. The code can be used to calculate stress distributions and thermal transport properties for a variety of nanostructures and interfaces, transport and scattering at nanoscale interfaces and surfaces under various stress states, and alloy compositional gradients. The code allows users to perform modeling of charge transport processes through quantum-dot (QD) arrays as functions of inter-dot distance, array order versus disorder, QD orientation, shape, size, and chemical composition for applications in photovoltaics and physical properties of QD-based biochemical sensors. The code can be used to study the hot exciton formation/relation dynamics in arrays of QDs of different shapes and sizes at different temperatures. It also can be used to understand the relation among the deposition parameters and inherent stresses, strain deformation, heat flow, and failure of nanostructures.

  15. Topological Code Architectures for Quantum Computation

    NASA Astrophysics Data System (ADS)

    Cesare, Christopher Anthony

    This dissertation is concerned with quantum computation using many-body quantum systems encoded in topological codes. The interest in these topological systems has increased in recent years as devices in the lab begin to reach the fidelities required for performing arbitrarily long quantum algorithms. The most well-studied system, Kitaev's toric code, provides both a physical substrate for performing universal fault-tolerant quantum computations and a useful pedagogical tool for explaining the way other topological codes work. In this dissertation, I first review the necessary formalism for quantum information and quantum stabilizer codes, and then I introduce two families of topological codes: Kitaev's toric code and Bombin's color codes. I then present three chapters of original work. First, I explore the distinctness of encoding schemes in the color codes. Second, I introduce a model of quantum computation based on the toric code that uses adiabatic interpolations between static Hamiltonians with gaps constant in the system size. Lastly, I describe novel state distillation protocols that are naturally suited for topological architectures and show that they provide resource savings in terms of the number of required ancilla states when compared to more traditional approaches to quantum gate approximation.

  16. Computational Graph Model for 3D Cells Tracking in Zebra Fish Datasets

    NASA Astrophysics Data System (ADS)

    Zhang, Lelin; Xiong, Hongkai; Zhao, Yang; Zhang, Kai; Zhou, Xiaobo

    2007-11-01

    This paper leads to a novel technique for tracking and identification of zebra-fish cells in 3D image sequences, extending graph-based multi-objects tracking algorithm to 3D applications. As raised in previous work of 2D graph-based method, separated cells are modeled as vertices that connected by edges. Then the tracking work is simplified to that of vertices matching between graphs generated from consecutive frames. Graph-based tracking is composed of three steps: graph generation, initial source vertices selection and graph saturation. To satisfy demands in this work separated cell records are segmented from original datasets using 3D level-set algorithms. Besides, advancements are achieved in each of the step including graph regulations, multi restrictions on source vertices and enhanced flow quantifications. Those strategies make a good compensation for graph-based multi-objects tracking method in 2D space. Experiments are carried out in 3D datasets sampled from zebra fish, results of which shows that this enhanced method could be potentially applied to tracking of objects with diverse features.

  17. 3D Printing Meets Computational Astrophysics: Deciphering the Structure of Eta Carinae’s Colliding Winds Using 3D Prints of Smoothed Particle Hydrodynamics Simulations

    NASA Astrophysics Data System (ADS)

    Madura, Thomas; Gull, Theodore R.; Clementel, Nicola; Paardekooper, Jan-Pieter; Kruip, Chael; Corcoran, Michael F.; Hamaguchi, Kenji; Teodoro, Mairan

    2015-01-01

    We present the first 3D prints of output from a supercomputer simulation of a complex astrophysical system, the colliding stellar winds in the massive (>120 MSun), highly eccentric (e ~ 0.9) binary Eta Carinae. Using a consumer-grade 3D printer (Makerbot Replicator 2X), we successfully printed 3D smoothed particle hydrodynamics simulations of Eta Carinae's inner (r ~110 AU) wind-wind collision interface at multiple orbital phases. These 3D prints reveal important, previously unknown 'finger-like' structures at orbital phases shortly after periastron (φ ~1.045) that protrude radially outward from the spiral wind-wind collision region. We speculate that these fingers are related to instabilities (e.g. Rayleigh-Taylor) that arise at the interface between the radiatively-cooled layer of dense post-shock primary-star wind and the hot, adiabatic post-shock companion-star wind. The success of our work and easy identification of previously unknown physical features highlight the important role 3D printing can play in the visualization and understanding of complex 3D time-dependent numerical simulations of astrophysical phenomena.

  18. Efficient computational methods for electromagnetic imaging with applications to 3D magnetotellurics

    NASA Astrophysics Data System (ADS)

    Kordy, Michal Adam

    The motivation for this work is the forward and inverse problem for magnetotellurics, a frequency domain electromagnetic remote-sensing geophysical method used in mineral, geothermal, and groundwater exploration. The dissertation consists of four papers. In the first paper, we prove the existence and uniqueness of a representation of any vector field in H(curl) by a vector lying in H(curl) and H(div). It allows us to represent electric or magnetic fields by another vector field, for which nodal finite element approximation may be used in the case of non-constant electromagnetic properties. With this approach, the system matrix does not become ill-posed for low-frequency. In the second paper, we consider hexahedral finite element approximation of an electric field for the magnetotelluric forward problem. The near-null space of the system matrix for low frequencies makes the numerical solution unstable in the air. We show that the proper solution may obtained by applying a correction on the null space of the curl. It is done by solving a Poisson equation using discrete Helmholtz decomposition. We parallelize the forward code on multicore workstation with large RAM. In the next paper, we use the forward code in the inversion. Regularization of the inversion is done by using the second norm of the logarithm of conductivity. The data space Gauss-Newton approach allows for significant savings in memory and computational time. We show the efficiency of the method by considering a number of synthetic inversions and we apply it to real data collected in Cascade Mountains. The last paper considers a cross-frequency interpolation of the forward response as well as the Jacobian. We consider Pade approximation through model order reduction and rational Krylov subspace. The interpolating frequencies are chosen adaptively in order to minimize the maximum error of interpolation. Two error indicator functions are compared. We prove a theorem of almost always lucky failure in the

  19. Computer-aided diagnosis of pulmonary nodules on CT scans: Segmentation and classification using 3D active contours

    PubMed Central

    Way, Ted W.; Hadjiiski, Lubomir M.; Sahiner, Berkman; Chan, Heang-Ping; Cascade, Philip N.; Kazerooni, Ella A.; Bogot, Naama; Zhou, Chuan

    2009-01-01

    We are developing a computer-aided diagnosis (CAD) system to classify malignant and benign lung nodules found on CT scans. A fully automated system was designed to segment the nodule from its surrounding structured background in a local volume of interest (VOI) and to extract image features for classification. Image segmentation was performed with a three-dimensional (3D) active contour (AC) method. A data set of 96 lung nodules (44 malignant, 52 benign) from 58 patients was used in this study. The 3D AC model is based on two-dimensional AC with the addition of three new energy components to take advantage of 3D information: (1) 3D gradient, which guides the active contour to seek the object surface, (2) 3D curvature, which imposes a smoothness constraint in the z direction, and (3) mask energy, which penalizes contours that grow beyond the pleura or thoracic wall. The search for the best energy weights in the 3D AC model was guided by a simplex optimization method. Morphological and gray-level features were extracted from the segmented nodule. The rubber band straightening transform (RBST) was applied to the shell of voxels surrounding the nodule. Texture features based on run-length statistics were extracted from the RBST image. A linear discriminant analysis classifier with stepwise feature selection was designed using a second simplex optimization to select the most effective features. Leave-one-case-out resampling was used to train and test the CAD system. The system achieved a test area under the receiver operating characteristic curve (Az) of 0.83±0.04. Our preliminary results indicate that use of the 3D AC model and the 3D texture features surrounding the nodule is a promising approach to the segmentation and classification of lung nodules with CAD. The segmentation performance of the 3D AC model trained with our data set was evaluated with 23 nodules available in the Lung Image Database Consortium (LIDC). The lung nodule volumes segmented by the 3D AC

  20. Impact of an Event-Specific Plasma Density Model for Modeling the October 8-9, 2012, Event with the LANL DREAM3D Diffusion Code

    NASA Astrophysics Data System (ADS)

    Cunningham, G.; Tu, W.; Morley, S.; Chen, Y.; Haidecuk, J.; De Pascuale, S.; Kletzing, C.

    2014-12-01

    Modeling the variation of the MeV electron phase space density in the inner magnetosphere during active times is sensitive to many parameters, including the initial and time-varying boundary conditions, VLF wave spectral properties, plasma density, and magnetic field. Historically, diffusion codes like LANL's DREAM3D have relied on the statistically-derived dependence of these parameters on geomagnetic indices, e.g. the wave intensity as a function of the AE index. However, the large number of satellites currently sampling the inner magnetosphere presents modelers with an unparalleled opportunity to create 'event-specific' models for many of these parameters. Toward this goal, we recently showed that using an event-specific model of the chorus wave intensity, built from proxy observations of low-energy electron precipitation observed by POES, along with a low-energy time-varying boundary condition informed by the Van Allen Probes, allows DREAM3D to reproduce the large enhancement of PSD for MeV electrons observed during the October 8-9, 2012, storm. One major limitation of this work is the fact that we used the static Sheeley plasma density model and a dipole magnetic field. Here we will discuss new results that use measurements of the plasma density inferred from the Van Allen Probes' EMFISIS instrument to build an event-specific, global, time-dependent model of the plasma density that we use in DREAM3D in combination with the Tsyganenko 2004 storm-time model of the magnetic field. We show that this combination of plasma density and magnetic field model reproduce the ratio of cyclotron frequency to plasma frequency reported by EMFISIS during the entirety of the October 8-9, 2012, storm at all L-shells of interest, whereas our earlier results did not use the correct ratio at most locations and times. Because this ratio is a key parameter governing the effectiveness of chorus waves in accelerating electrons to higher energy, our new DREAM3D results resolve several

  1. Generating 3D anatomically detailed models of the retina from OCT data sets: implications for computational modelling

    NASA Astrophysics Data System (ADS)

    Shalbaf, Farzaneh; Dokos, Socrates; Lovell, Nigel H.; Turuwhenua, Jason; Vaghefi, Ehsan

    2015-12-01

    Retinal prosthesis has been proposed to restore vision for those suffering from the retinal pathologies that mainly affect the photoreceptors layer but keep the inner retina intact. Prior to costly risky experimental studies computational modelling of the retina will help to optimize the device parameters and enhance the outcomes. Here, we developed an anatomically detailed computational model of the retina based on OCT data sets. The consecutive OCT images of individual were subsequently segmented to provide a 3D representation of retina in the form of finite elements. Thereafter, the electrical properties of the retina were modelled by implementing partial differential equation on the 3D mesh. Different electrode configurations, that is bipolar and hexapolar configurations, were implemented and the results were compared with the previous computational and experimental studies. Furthermore, the possible effects of the curvature of retinal layers on the current steering through the retina were proposed and linked to the clinical observations.

  2. Computer-aided multiple-head 3D printing system for printing of heterogeneous organ/tissue constructs

    NASA Astrophysics Data System (ADS)

    Jung, Jin Woo; Lee, Jung-Seob; Cho, Dong-Woo

    2016-02-01

    Recently, much attention has focused on replacement or/and enhancement of biological tissues via the use of cell-laden hydrogel scaffolds with an architecture that mimics the tissue matrix, and with the desired three-dimensional (3D) external geometry. However, mimicking the heterogeneous tissues that most organs and tissues are formed of is challenging. Although multiple-head 3D printing systems have been proposed for fabricating heterogeneous cell-laden hydrogel scaffolds, to date only the simple exterior form has been realized. Here we describe a computer-aided design and manufacturing (CAD/CAM) system for this application. We aim to develop an algorithm to enable easy, intuitive design and fabrication of a heterogeneous cell-laden hydrogel scaffolds with a free-form 3D geometry. The printing paths of the scaffold are automatically generated from the 3D CAD model, and the scaffold is then printed by dispensing four materials; i.e., a frame, two kinds of cell-laden hydrogel and a support. We demonstrated printing of heterogeneous tissue models formed of hydrogel scaffolds using this approach, including the outer ear, kidney and tooth tissue. These results indicate that this approach is particularly promising for tissue engineering and 3D printing applications to regenerate heterogeneous organs and tissues with tailored geometries to treat specific defects or injuries.

  3. A computational model that recovers the 3D shape of an object from a single 2D retinal representation.

    PubMed

    Li, Yunfeng; Pizlo, Zygmunt; Steinman, Robert M

    2009-05-01

    Human beings perceive 3D shapes veridically, but the underlying mechanisms remain unknown. The problem of producing veridical shape percepts is computationally difficult because the 3D shapes have to be recovered from 2D retinal images. This paper describes a new model, based on a regularization approach, that does this very well. It uses a new simplicity principle composed of four shape constraints: viz., symmetry, planarity, maximum compactness and minimum surface. Maximum compactness and minimum surface have never been used before. The model was tested with random symmetrical polyhedra. It recovered their 3D shapes from a single randomly-chosen 2D image. Neither learning, nor depth perception, was required. The effectiveness of the maximum compactness and the minimum surface constraints were measured by how well the aspect ratio of the 3D shapes was recovered. These constraints were effective; they recovered the aspect ratio of the 3D shapes very well. Aspect ratios recovered by the model were compared to aspect ratios adjusted by four human observers. They also adjusted aspect ratios very well. In those rare cases, in which the human observers showed large errors in adjusted aspect ratios, their errors were very similar to the errors made by the model. PMID:18621410

  4. Computer-aided multiple-head 3D printing system for printing of heterogeneous organ/tissue constructs.

    PubMed

    Jung, Jin Woo; Lee, Jung-Seob; Cho, Dong-Woo

    2016-01-01

    Recently, much attention has focused on replacement or/and enhancement of biological tissues via the use of cell-laden hydrogel scaffolds with an architecture that mimics the tissue matrix, and with the desired three-dimensional (3D) external geometry. However, mimicking the heterogeneous tissues that most organs and tissues are formed of is challenging. Although multiple-head 3D printing systems have been proposed for fabricating heterogeneous cell-laden hydrogel scaffolds, to date only the simple exterior form has been realized. Here we describe a computer-aided design and manufacturing (CAD/CAM) system for this application. We aim to develop an algorithm to enable easy, intuitive design and fabrication of a heterogeneous cell-laden hydrogel scaffolds with a free-form 3D geometry. The printing paths of the scaffold are automatically generated from the 3D CAD model, and the scaffold is then printed by dispensing four materials; i.e., a frame, two kinds of cell-laden hydrogel and a support. We demonstrated printing of heterogeneous tissue models formed of hydrogel scaffolds using this approach, including the outer ear, kidney and tooth tissue. These results indicate that this approach is particularly promising for tissue engineering and 3D printing applications to regenerate heterogeneous organs and tissues with tailored geometries to treat specific defects or injuries. PMID:26899876

  5. Use of micro computed-tomography and 3D printing for reverse engineering of mouse embryo nasal capsule

    NASA Astrophysics Data System (ADS)

    Tesařová, M.; Zikmund, T.; Kaucká, M.; Adameyko, I.; Jaroš, J.; Paloušek, D.; Škaroupka, D.; Kaiser, J.

    2016-03-01

    Imaging of increasingly complex cartilage in vertebrate embryos is one of the key tasks of developmental biology. This is especially important to study shape-organizing processes during initial skeletal formation and growth. Advanced imaging techniques that are reflecting biological needs give a powerful impulse to push the boundaries of biological visualization. Recently, techniques for contrasting tissues and organs have improved considerably, extending traditional 2D imaging approaches to 3D . X-ray micro computed tomography (μCT), which allows 3D imaging of biological objects including their internal structures with a resolution in the micrometer range, in combination with contrasting techniques seems to be the most suitable approach for non-destructive imaging of embryonic developing cartilage. Despite there are many software-based ways for visualization of 3D data sets, having a real solid model of the studied object might give novel opportunities to fully understand the shape-organizing processes in the developing body. In this feasibility study we demonstrated the full procedure of creating a real 3D object of mouse embryo nasal capsule, i.e. the staining, the μCT scanning combined by the advanced data processing and the 3D printing.

  6. Computer-aided multiple-head 3D printing system for printing of heterogeneous organ/tissue constructs

    PubMed Central

    Jung, Jin Woo; Lee, Jung-Seob; Cho, Dong-Woo

    2016-01-01

    Recently, much attention has focused on replacement or/and enhancement of biological tissues via the use of cell-laden hydrogel scaffolds with an architecture that mimics the tissue matrix, and with the desired three-dimensional (3D) external geometry. However, mimicking the heterogeneous tissues that most organs and tissues are formed of is challenging. Although multiple-head 3D printing systems have been proposed for fabricating heterogeneous cell-laden hydrogel scaffolds, to date only the simple exterior form has been realized. Here we describe a computer-aided design and manufacturing (CAD/CAM) system for this application. We aim to develop an algorithm to enable easy, intuitive design and fabrication of a heterogeneous cell-laden hydrogel scaffolds with a free-form 3D geometry. The printing paths of the scaffold are automatically generated from the 3D CAD model, and the scaffold is then printed by dispensing four materials; i.e., a frame, two kinds of cell-laden hydrogel and a support. We demonstrated printing of heterogeneous tissue models formed of hydrogel scaffolds using this approach, including the outer ear, kidney and tooth tissue. These results indicate that this approach is particularly promising for tissue engineering and 3D printing applications to regenerate heterogeneous organs and tissues with tailored geometries to treat specific defects or injuries. PMID:26899876

  7. Classification and quantification of pore shapes in sandstone reservoir rocks with 3-D X-ray micro-computed tomography

    NASA Astrophysics Data System (ADS)

    Schmitt, M.; Halisch, M.; Müller, C.; Fernandes, C. P.

    2015-12-01

    Recent years have seen a growing interest in the characterization of the pore morphologies of reservoir rocks and how the spatial organization of pore traits affects the macro behaviour of rock-fluid systems. With the availability of 3-D high-resolution imaging (e.g. μ-CT), the detailed quantification of particle shapes has been facilitated by progress in computer science. Here, we show how the shapes of irregular rock particles (pores) can be classified and quantified based on binary 3-D images. The methodology requires the measurement of basic 3-D particle descriptors and a shape classification that involves the similarity of artificial objects, which is based on main pore network detachments and 3-D sample sizes. The results were validated for three sandstones (S1, S2 and S3) from distinct reservoirs, and most of the pore shapes were found to be plate- and cube-like. Furthermore, this study generalizes a practical way to correlate specific particle shapes, such as rods, blades, cuboids, plates and cubes, to characterize asymmetric particles of any material type with 3-D image analysis.

  8. Analyzing bone remodeling patterns after total hip arthroplasty using quantitative computed tomography and patient-specific 3D computational models

    PubMed Central

    Arachchi, Shanika; Pitto, Rocco P.; Anderson, Iain A.

    2015-01-01

    Background Computational models in the form of finite element analysis technique that incorporates bone remodeling theories along with DEXA scans has been extensively used in predicting bone remodeling patterns around the implant. However, majority of such studies used generic models. Therefore, the aim of this study is to develop patient-specific finite element models of total hip replacement patients using their quantitative computed tomography (QCT) scans and accurately analyse bone remodelling patterns after total hip arthroplasty (THA). Methods Patient-specific finite element models have been generated using the patients’ QCT scans from a previous clinical follow-up study. The femur was divided into five regions in proximal-distal direction and then further divided into four quadrants for detailed analysis of bone remodeling patterns. Two types of analysis were performed—inter-patient and intra patient to compare them and then the resulting bone remodeling patterns were quantitatively analyzed. Results Our results show that cortical bone density decrease is higher in diaphyseal region over time and the cancellous bone density decreases significantly in metaphyseal region over time. In metaphyseal region, posterior-medial (P-M) quadrant showed high bone loss while diaphyseal regions show high bone loss in anterior-lateral (A-L) quadrant. Conclusions Our study demonstrated that combining QCT with 3D patient-specific models has the ability of monitoring bone density change patterns after THA in much finer details. Future studies include using these findings for the development of a bone remodelling algorithm capable of predicting surgical outcomes for THA patients. PMID:26435921

  9. Thermal Hydraulic Computer Code System.

    1999-07-16

    Version 00 RELAP5 was developed to describe the behavior of a light water reactor (LWR) subjected to postulated transients such as loss of coolant from large or small pipe breaks, pump failures, etc. RELAP5 calculates fluid conditions such as velocities, pressures, densities, qualities, temperatures; thermal conditions such as surface temperatures, temperature distributions, heat fluxes; pump conditions; trip conditions; reactor power and reactivity from point reactor kinetics; and control system variables. In addition to reactor applications,more » the program can be applied to transient analysis of other thermal‑hydraulic systems with water as the fluid. This package contains RELAP5/MOD1/029 for CDC computers and RELAP5/MOD1/025 for VAX or IBM mainframe computers.« less

  10. Computational Identification of Genomic Features That Influence 3D Chromatin Domain Formation

    PubMed Central

    Mourad, Raphaël; Cuvier, Olivier

    2016-01-01

    Recent advances in long-range Hi-C contact mapping have revealed the importance of the 3D structure of chromosomes in gene expression. A current challenge is to identify the key molecular drivers of this 3D structure. Several genomic features, such as architectural proteins and functional elements, were shown to be enriched at topological domain borders using classical enrichment tests. Here we propose multiple logistic regression to identify those genomic features that positively or negatively influence domain border establishment or maintenance. The model is flexible, and can account for statistical interactions among multiple genomic features. Using both simulated and real data, we show that our model outperforms enrichment test and non-parametric models, such as random forests, for the identification of genomic features that influence domain borders. Using Drosophila Hi-C data at a very high resolution of 1 kb, our model suggests that, among architectural proteins, BEAF-32 and CP190 are the main positive drivers of 3D domain borders. In humans, our model identifies well-known architectural proteins CTCF and cohesin, as well as ZNF143 and Polycomb group proteins as positive drivers of domain borders. The model also reveals the existence of several negative drivers that counteract the presence of domain borders including P300, RXRA, BCL11A and ELK1. PMID:27203237

  11. A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery.

    PubMed

    Nowell, Mark; Rodionov, Roman; Zombori, Gergely; Sparks, Rachel; Rizzi, Michele; Ourselin, Sebastien; Miserocchi, Anna; McEvoy, Andrew; Duncan, John

    2016-01-01

    Epilepsy surgery is challenging and the use of 3D multimodality image integration (3DMMI) to aid presurgical planning is well-established. Multimodality image integration can be technically demanding, and is underutilised in clinical practice. We have developed a single software platform for image integration, 3D visualization and surgical planning. Here, our pipeline is described in step-by-step fashion, starting with image acquisition, proceeding through image co-registration, manual segmentation, brain and vessel extraction, 3D visualization and manual planning of stereoEEG (SEEG) implantations. With dissemination of the software this pipeline can be reproduced in other centres, allowing other groups to benefit from 3DMMI. We also describe the use of an automated, multi-trajectory planner to generate stereoEEG implantation plans. Preliminary studies suggest this is a rapid, safe and efficacious adjunct for planning SEEG implantations. Finally, a simple solution for the export of plans and models to commercial neuronavigation systems for implementation of plans in the operating theater is described. This software is a valuable tool that can support clinical decision making throughout the epilepsy surgery pathway. PMID:27286266

  12. A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery

    PubMed Central

    Nowell, Mark; Rodionov, Roman; Zombori, Gergely; Sparks, Rachel; Rizzi, Michele; Ourselin, Sebastien; Miserocchi, Anna; McEvoy, Andrew; Duncan, John

    2016-01-01

    Epilepsy surgery is challenging and the use of 3D multimodality image integration (3DMMI) to aid presurgical planning is well-established. Multimodality image integration can be technically demanding, and is underutilised in clinical practice. We have developed a single software platform for image integration, 3D visualization and surgical planning. Here, our pipeline is described in step-by-step fashion, starting with image acquisition, proceeding through image co-registration, manual segmentation, brain and vessel extraction, 3D visualization and manual planning of stereoEEG (SEEG) implantations. With dissemination of the software this pipeline can be reproduced in other centres, allowing other groups to benefit from 3DMMI. We also describe the use of an automated, multi-trajectory planner to generate stereoEEG implantation plans. Preliminary studies suggest this is a rapid, safe and efficacious adjunct for planning SEEG implantations. Finally, a simple solution for the export of plans and models to commercial neuronavigation systems for implementation of plans in the operating theater is described. This software is a valuable tool that can support clinical decision making throughout the epilepsy surgery pathway. PMID:27286266

  13. Test Problems for Reactive Flow HE Model in the ALE3D Code and Limited Sensitivity Study

    SciTech Connect

    Gerassimenko, M.

    2000-03-01

    We document quick running test problems for a reactive flow model of HE initiation incorporated into ALE3D. A quarter percent change in projectile velocity changes the outcome from detonation to HE burn that dies down. We study the sensitivity of calculated HE behavior to several parameters of practical interest where modeling HE initiation with ALE3D.

  14. A visual probe localization and calibration system for cost-effective computer-aided 3D ultrasound.

    PubMed

    Ali, Aziah; Logeswaran, Rajasvaran

    2007-08-01

    The 3D ultrasound systems produce much better reproductions than 2D ultrasound, but their prohibitively high cost deprives many less affluent organization this benefit. This paper proposes using the conventional 2D ultrasound equipment readily available in most hospitals, along with a single conventional digital camera, to construct 3D ultrasound images. The proposed system applies computer vision to extract position information of the ultrasound probe while the scanning takes place. The probe, calibrated in order to calculate the offset of the ultrasound scan from the position of the marker attached to it, is used to scan a number of geometrical objects. Using the proposed system, the 3D volumes of the objects were successfully reconstructed. The system was tested in clinical situations where human body parts were scanned. The results presented, and confirmed by medical staff, are very encouraging for cost-effective implementation of computer-aided 3D ultrasound using a simple setup with 2D ultrasound equipment and a conventional digital camera. PMID:17126314

  15. Validation of a 3D computational fluid-structure interaction model simulating flow through an elastic aperture

    PubMed Central

    Quaini, A.; Canic, S.; Glowinski, R.; Igo, S.; Hartley, C.J.; Zoghbi, W.; Little, S.

    2011-01-01

    This work presents a validation of a fluid-structure interaction computational model simulating the flow conditions in an in vitro mock heart chamber modeling mitral valve regurgitation during the ejection phase during which the trans-valvular pressure drop and valve displacement are not as large. The mock heart chamber was developed to study the use of 2D and 3D color Doppler techniques in imaging the clinically relevant complex intra-cardiac flow events associated with mitral regurgitation. Computational models are expected to play an important role in supporting, refining, and reinforcing the emerging 3D echocardiographic applications. We have developed a 3D computational fluid-structure interaction algorithm based on a semi-implicit, monolithic method, combined with an arbitrary Lagrangian-Eulerian approach to capture the fluid domain motion. The mock regurgitant mitral valve corresponding to an elastic plate with a geometric orifice, was modeled using 3D elasticity, while the blood flow was modeled using the 3D Navier-Stokes equations for an incompressible, viscous fluid. The two are coupled via the kinematic and dynamic conditions describing the two-way coupling. The pressure, the flow rate, and orifice plate displacement were measured and compared with numerical simulation results. In-line flow meter was used to measure the flow, pressure transducers were used to measure the pressure, and a Doppler method developed by one of the authors was used to measure the axial displacement of the orifice plate. The maximum recorded difference between experiment and numerical simulation for the flow rate was 4%, the pressure 3.6%, and for the orifice displacement 15%, showing excellent agreement between the two. PMID:22138194

  16. Validation of a 3D computational fluid-structure interaction model simulating flow through an elastic aperture.

    PubMed

    Quaini, A; Canic, S; Glowinski, R; Igo, S; Hartley, C J; Zoghbi, W; Little, S

    2012-01-10

    This work presents a validation of a fluid-structure interaction computational model simulating the flow conditions in an in vitro mock heart chamber modeling mitral valve regurgitation during the ejection phase during which the trans-valvular pressure drop and valve displacement are not as large. The mock heart chamber was developed to study the use of 2D and 3D color Doppler techniques in imaging the clinically relevant complex intra-cardiac flow events associated with mitral regurgitation. Computational models are expected to play an important role in supporting, refining, and reinforcing the emerging 3D echocardiographic applications. We have developed a 3D computational fluid-structure interaction algorithm based on a semi-implicit, monolithic method, combined with an arbitrary Lagrangian-Eulerian approach to capture the fluid domain motion. The mock regurgitant mitral valve corresponding to an elastic plate with a geometric orifice, was modeled using 3D elasticity, while the blood flow was modeled using the 3D Navier-Stokes equations for an incompressible, viscous fluid. The two are coupled via the kinematic and dynamic conditions describing the two-way coupling. The pressure, the flow rate, and orifice plate displacement were measured and compared with numerical simulation results. In-line flow meter was used to measure the flow, pressure transducers were used to measure the pressure, and a Doppler method developed by one of the authors was used to measure the axial displacement of the orifice plate. The maximum recorded difference between experiment and numerical simulation for the flow rate was 4%, the pressure 3.6%, and for the orifice displacement 15%, showing excellent agreement between the two. PMID:22138194

  17. Computer-aided segmentation and 3D analysis of in vivo MRI examinations of the human vocal tract during phonation

    NASA Astrophysics Data System (ADS)

    Wismüller, Axel; Behrends, Johannes; Hoole, Phil; Leinsinger, Gerda L.; Meyer-Baese, Anke; Reiser, Maximilian F.

    2008-03-01

    We developed, tested, and evaluated a 3D segmentation and analysis system for in vivo MRI examinations of the human vocal tract during phonation. For this purpose, six professionally trained speakers, age 22-34y, were examined using a standardized MRI protocol (1.5 T, T1w FLASH, ST 4mm, 23 slices, acq. time 21s). The volunteers performed a prolonged (>=21s) emission of sounds of the German phonemic inventory. Simultaneous audio tape recording was obtained to control correct utterance. Scans were made in axial, coronal, and sagittal planes each. Computer-aided quantitative 3D evaluation included (i) automated registration of the phoneme-specific data acquired in different slice orientations, (ii) semi-automated segmentation of oropharyngeal structures, (iii) computation of a curvilinear vocal tract midline in 3D by nonlinear PCA, (iv) computation of cross-sectional areas of the vocal tract perpendicular to this midline. For the vowels /a/,/e/,/i/,/o/,/ø/,/u/,/y/, the extracted area functions were used to synthesize phoneme sounds based on an articulatory-acoustic model. For quantitative analysis, recorded and synthesized phonemes were compared, where area functions extracted from 2D midsagittal slices were used as a reference. All vowels could be identified correctly based on the synthesized phoneme sounds. The comparison between synthesized and recorded vowel phonemes revealed that the quality of phoneme sound synthesis was improved for phonemes /a/ and /y/, if 3D instead of 2D data were used, as measured by the average relative frequency shift between recorded and synthesized vowel formants (p<0.05, one-sided Wilcoxon rank sum test). In summary, the combination of fast MRI followed by subsequent 3D segmentation and analysis is a novel approach to examine human phonation in vivo. It unveils functional anatomical findings that may be essential for realistic modelling of the human vocal tract during speech production.

  18. 3-D transient analysis of pebble-bed HTGR by TORT-TD/ATTICA3D

    SciTech Connect

    Seubert, A.; Sureda, A.; Lapins, J.; Buck, M.; Bader, J.; Laurien, E.

    2012-07-01

    As most of the acceptance criteria are local core parameters, application of transient 3-D fine mesh neutron transport and thermal hydraulics coupled codes is mandatory for best estimate evaluations of safety margins. This also applies to high-temperature gas cooled reactors (HTGR). Application of 3-D fine-mesh transient transport codes using few energy groups coupled with 3-D thermal hydraulics codes becomes feasible in view of increasing computing power. This paper describes the discrete ordinates based coupled code system TORT-TD/ATTICA3D that has recently been extended by a fine-mesh diffusion solver. Based on transient analyses for the PBMR-400 design, the transport/diffusion capabilities are demonstrated and 3-D local flux and power redistribution effects during a partial control rod withdrawal are shown. (authors)

  19. A multiblock/multizone code (PAB 3D-v2) for the three-dimensional Navier-Stokes equations: Preliminary applications

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, Khaled S.

    1990-01-01

    The development and applications of multiblock/multizone and adaptive grid methodologies for solving the three-dimensional simplified Navier-Stokes equations are described. Adaptive grid and multiblock/multizone approaches are introduced and applied to external and internal flow problems. These new implementations increase the capabilities and flexibility of the PAB3D code in solving flow problems associated with complex geometry.

  20. Implementation of Headtracking and 3D Stereo with Unity and VRPN for Computer Simulations

    NASA Technical Reports Server (NTRS)

    Noyes, Matthew A.

    2013-01-01

    This paper explores low-cost hardware and software methods to provide depth cues traditionally absent in monocular displays. The use of a VRPN server in conjunction with a Microsoft Kinect and/or Nintendo Wiimote to provide head tracking information to a Unity application, and NVIDIA 3D Vision for retinal disparity support, is discussed. Methods are suggested to implement this technology with NASA's EDGE simulation graphics package, along with potential caveats. Finally, future applications of this technology to astronaut crew training, particularly when combined with an omnidirectional treadmill for virtual locomotion and NASA's ARGOS system for reduced gravity simulation, are discussed.

  1. Isoparametric 3-D Finite Element Mesh Generation Using Interactive Computer Graphics

    NASA Technical Reports Server (NTRS)

    Kayrak, C.; Ozsoy, T.

    1985-01-01

    An isoparametric 3-D finite element mesh generator was developed with direct interface to an interactive geometric modeler program called POLYGON. POLYGON defines the model geometry in terms of boundaries and mesh regions for the mesh generator. The mesh generator controls the mesh flow through the 2-dimensional spans of regions by using the topological data and defines the connectivity between regions. The program is menu driven and the user has a control of element density and biasing through the spans and can also apply boundary conditions, loads interactively.

  2. Explicit 3-D Hydrodynamic FEM Program

    2000-11-07

    DYNA3D is a nonlinear explicit finite element code for analyzing 3-D structures and solid continuum. The code is vectorized and available on several computer platforms. The element library includes continuum, shell, beam, truss and spring/damper elements to allow maximum flexibility in modeling physical problems. Many materials are available to represent a wide range of material behavior, including elasticity, plasticity, composites, thermal effects and rate dependence. In addition, DYNA3D has a sophisticated contact interface capability, includingmore » frictional sliding, single surface contact and automatic contact generation.« less

  3. Explicit 3-D Hydrodynamic FEM Program

    SciTech Connect

    2000-11-07

    DYNA3D is a nonlinear explicit finite element code for analyzing 3-D structures and solid continuum. The code is vectorized and available on several computer platforms. The element library includes continuum, shell, beam, truss and spring/damper elements to allow maximum flexibility in modeling physical problems. Many materials are available to represent a wide range of material behavior, including elasticity, plasticity, composites, thermal effects and rate dependence. In addition, DYNA3D has a sophisticated contact interface capability, including frictional sliding, single surface contact and automatic contact generation.

  4. Novel low-cost 2D/3D switchable autostereoscopic system for notebook computers and other portable devices

    NASA Astrophysics Data System (ADS)

    Eichenlaub, Jesse B.

    1995-03-01

    Mounting a lenticular lens in front of a flat panel display is a well known, inexpensive, and easy way to create an autostereoscopic system. Such a lens produces half resolution 3D images because half the pixels on the LCD are seen by the left eye and half by the right eye. This may be acceptable for graphics, but it makes full resolution text, as displayed by common software, nearly unreadable. Very fine alignment tolerances normally preclude the possibility of removing and replacing the lens in order to switch between 2D and 3D applications. Lenticular lens based displays are therefore limited to use as dedicated 3D devices. DTI has devised a technique which removes this limitation, allowing switching between full resolution 2D and half resolution 3D imaging modes. A second element, in the form of a concave lenticular lens array whose shape is exactly the negative of the first lens, is mounted on a hinge so that it can be swung down over the first lens array. When so positioned the two lenses cancel optically, allowing the user to see full resolution 2D for text or numerical applications. The two lenses, having complementary shapes, naturally tend to nestle together and snap into perfect alignment when pressed together--thus obviating any need for user operated alignment mechanisms. This system represents an ideal solution for laptop and notebook computer applications. It was devised to meet the stringent requirements of a laptop computer manufacturer including very compact size, very low cost, little impact on existing manufacturing or assembly procedures, and compatibility with existing full resolution 2D text- oriented software as well as 3D graphics. Similar requirements apply to high and electronic calculators, several models of which now use LCDs for the display of graphics.

  5. Classification and quantification of pore shapes in sandstone reservoir rocks with 3-D X-ray micro-computed tomography

    NASA Astrophysics Data System (ADS)

    Schmitt, Mayka; Halisch, Matthias; Müller, Cornelia; Peres Fernandes, Celso

    2016-02-01

    Recent years have seen a growing interest in the characterization of the pore morphologies of reservoir rocks and how the spatial organization of pore traits affects the macro behavior of rock-fluid systems. With the availability of 3-D high-resolution imaging, such as x-ray micro-computed tomography (µ-CT), the detailed quantification of particle shapes has been facilitated by progress in computer science. Here, we show how the shapes of irregular rock particles (pores) can be classified and quantified based on binary 3-D images. The methodology requires the measurement of basic 3-D particle descriptors (length, width, and thickness) and a shape classification that involves the similarity of artificial objects, which is based on main pore network detachments and 3-D sample sizes. Two main pore components were identified from the analyzed volumes: pore networks and residual pore ganglia. A watershed algorithm was applied to preserve the pore morphology after separating the main pore networks, which is essential for the pore shape characterization. The results were validated for three sandstones (S1, S2, and S3) from distinct reservoirs, and most of the pore shapes were found to be plate- and cube-like, ranging from 39.49 to 50.94 % and from 58.80 to 45.18 % when the Feret caliper descriptor was investigated in a 10003 voxel volume. Furthermore, this study generalizes a practical way to correlate specific particle shapes, such as rods, blades, cuboids, plates, and cubes to characterize asymmetric particles of any material type with 3-D image analysis.

  6. Computing and monitoring potential of public spaces by shading analysis using 3d lidar data and advanced image analysis

    NASA Astrophysics Data System (ADS)

    Zwolinski, A.; Jarzemski, M.

    2015-04-01

    The paper regards specific context of public spaces in "shadow" of tall buildings located in European cities. Majority of tall buildings in European cities were built in last 15 years. Tall buildings appear mainly in city centres, directly at important public spaces being viable environment for inhabitants with variety of public functions (open spaces, green areas, recreation places, shops, services etc.). All these amenities and services are under direct impact of extensive shading coming from the tall buildings. The paper focuses on analyses and representation of impact of shading from tall buildings on various public spaces in cities using 3D city models. Computer environment of 3D city models in cityGML standard uses 3D LiDAR data as one of data types for definition of 3D cities. The structure of cityGML allows analytic applications using existing computer tools, as well as developing new techniques to estimate extent of shading coming from high-risers, affecting life in public spaces. These measurable shading parameters in specific time are crucial for proper functioning, viability and attractiveness of public spaces - finally it is extremely important for location of tall buildings at main public spaces in cities. The paper explores impact of shading from tall buildings in different spatial contexts on the background of using cityGML models based on core LIDAR data to support controlled urban development in sense of viable public spaces. The article is prepared within research project 2TaLL: Application of 3D Virtual City Models in Urban Analyses of Tall Buildings, realized as a part of Polish-Norway Grants.

  7. STEALTH: a Lagrange explicit finite-difference code for solid, structural, and thermohydraulic analysis. Volume 8B. STEALTH/WHAMSE: a 3-D fluid-structure interaction code

    SciTech Connect

    Not Available

    1984-10-01

    STEALTH is a family of computer codes that can be used to calculate a variety of physical processes in which the dynamic behavior of a continuum is involved. The version of STEALTH described in this volume is designed for calculations of fluid-structure interaction. This version of the program consists of a hydrodynamic version of STEALTH which has been coupled to a finite-element code, WHAMSE. STEALTH computes the transient response of the fluid continuum, while WHAMSE computes the transient response of shell and beam structures under external fluid loadings. The coupling between STEALTH and WHAMSE is performed during each cycle or step of a calculation. Separate calculations of fluid response and structure response are avoided, thereby giving a more accurate model of the dynamic coupling between fluid and structure. This volume provides the theoretical background, the finite-difference equations, the finite-element equations, a discussion of several sample problems, a listing of the input decks for the sample problems, a programmer's manual and a description of the input records for the STEALTH/WHAMSE computer program.

  8. Fabrication of computationally designed scaffolds by low temperature 3D printing.

    PubMed

    Castilho, Miguel; Dias, Marta; Gbureck, Uwe; Groll, Jürgen; Fernandes, Paulo; Pires, Inês; Gouveia, Barbara; Rodrigues, Jorge; Vorndran, Elke

    2013-09-01

    The development of artificial bone substitutes that mimic the properties of bone and simultaneously promote the desired tissue regeneration is a current issue in bone tissue engineering research. An approach to create scaffolds with such characteristics is based on the combination of novel design and additive manufacturing processes. The objective of this work is to characterize the microstructural and the mechanical properties of scaffolds developed by coupling both topology optimization and a low temperature 3D printing process. The scaffold design was obtained using a topology optimization approach to maximize the permeability with constraints on the mechanical properties. This procedure was studied to be suitable for the fabrication of a cage prototype for tibial tuberosity advancement application, which is one of the most recent and promising techniques to treat cruciate ligament rupture in dogs. The microstructural and mechanical properties of the scaffolds manufactured by reacting α/β-tricalcium phosphate with diluted phosphoric acid were then assessed experimentally and the scaffolds strength reliability was determined. The results demonstrate that the low temperature 3D printing process is a reliable option to create synthetic scaffolds with tailored properties, and when coupled with topology optimization design it can be a powerful tool for the fabrication of patient-specific bone implants. PMID:23887064

  9. Computation of elastic properties of 3D digital cores from the Longmaxi shale

    NASA Astrophysics Data System (ADS)

    Zhang, Wen-Hui; Fu, Li-Yun; Zhang, Yan; Jin, Wei-Jun

    2016-06-01

    The dependence of elastic moduli of shales on the mineralogy and microstructure of shales is important for the prediction of sweet spots and shale gas production. Based on 3D digital images of the microstructure of Longmaxi black shale samples using X-ray CT, we built detailed 3D digital images of cores with porosity properties and mineral contents. Next, we used finite-element (FE) methods to derive the elastic properties of the samples. The FE method can accurately model the shale mineralogy. Particular attention is paid to the derived elastic properties and their dependence on porosity and kerogen. The elastic moduli generally decrease with increasing porosity and kerogen, and there is a critical porosity (0.75) and kerogen content (ca. ≤3%) over which the elastic moduli decrease rapidly and slowly, respectively. The derived elastic moduli of gas- and oil-saturated digital cores differ little probably because of the low porosity (4.5%) of the Longmaxi black shale. Clearly, the numerical experiments demonstrated the feasibility of combining microstructure images of shale samples with elastic moduli calculations to predict shale properties.

  10. Proceedings of the conference on computer codes and the linear accelerator community

    SciTech Connect

    Cooper, R.K.

    1990-07-01

    The conference whose proceedings you are reading was envisioned as the second in a series, the first having been held in San Diego in January 1988. The intended participants were those people who are actively involved in writing and applying computer codes for the solution of problems related to the design and construction of linear accelerators. The first conference reviewed many of the codes both extant and under development. This second conference provided an opportunity to update the status of those codes, and to provide a forum in which emerging new 3D codes could be described and discussed. The afternoon poster session on the second day of the conference provided an opportunity for extended discussion. All in all, this conference was felt to be quite a useful interchange of ideas and developments in the field of 3D calculations, parallel computation, higher-order optics calculations, and code documentation and maintenance for the linear accelerator community. A third conference is planned.

  11. NASA low-speed centrifugal compressor for 3-D viscous code assessment and fundamental flow physics research

    NASA Technical Reports Server (NTRS)

    Hathaway, M. D.; Wood, J. R.; Wasserbauer, C. A.

    1991-01-01

    A low speed centrifugal compressor facility recently built by the NASA Lewis Research Center is described. The purpose of this facility is to obtain detailed flow field measurements for computational fluid dynamic code assessment and flow physics modeling in support of Army and NASA efforts to advance small gas turbine engine technology. The facility is heavily instrumented with pressure and temperature probes, both in the stationary and rotating frames of reference, and has provisions for flow visualization and laser velocimetry. The facility will accommodate rotational speeds to 2400 rpm and is rated at pressures to 1.25 atm. The initial compressor stage being tested is geometrically and dynamically representative of modern high-performance centrifugal compressor stages with the exception of Mach number levels. Preliminary experimental investigations of inlet and exit flow uniformly and measurement repeatability are presented. These results demonstrate the high quality of the data which may be expected from this facility. The significance of synergism between computational fluid dynamic analysis and experimentation throughout the development of the low speed centrifugal compressor facility is demonstrated.

  12. CasimirSim - A Tool to Compute Casimir Polder Forces for Nontrivial 3D Geometries

    SciTech Connect

    Sedmik, Rene; Tajmar, Martin

    2007-01-30

    The so-called Casimir effect is one of the most interesting macro-quantum effects. Being negligible on the macro-scale it becomes a governing factor below structure sizes of 1 {mu}m where it accounts for typically 100 kN m-2. The force does not depend on gravity, or electric charge but solely on the materials properties, and geometrical shape. This makes the effect a strong candidate for micro(nano)-mechanical devices M(N)EMS. Despite a long history of research the theory lacks a uniform description valid for arbitrary geometries which retards technical application. We present an advanced state-of-the-art numerical tool overcoming all the usual geometrical restrictions, capable of calculating arbitrary 3D geometries by utilizing the Casimir Polder approximation for the Casimir force.

  13. Coupling 2-D cylindrical and 3-D x-y-z transport computations

    SciTech Connect

    Abu-Shumays, I.K.; Yehnert, C.E.; Pitcairn, T.N.

    1998-06-30

    This paper describes a new two-dimensional (2-D) cylindrical geometry to three-dimensional (3-D) rectangular x-y-z splice option for multi-dimensional discrete ordinates solutions to the neutron (photon) transport equation. Of particular interest are the simple transformations developed and applied in order to carry out the required spatial and angular interpolations. The spatial interpolations are linear and equivalent to those applied elsewhere. The angular interpolations are based on a high order spherical harmonics representation of the angular flux. Advantages of the current angular interpolations over previous work are discussed. An application to an intricate streaming problem is provided to demonstrate the advantages of the new method for efficient and accurate prediction of particle behavior in complex geometries.

  14. Development of probabilistic multimedia multipathway computer codes.

    SciTech Connect

    Yu, C.; LePoire, D.; Gnanapragasam, E.; Arnish, J.; Kamboj, S.; Biwer, B. M.; Cheng, J.-J.; Zielen, A. J.; Chen, S. Y.; Mo, T.; Abu-Eid, R.; Thaggard, M.; Sallo, A., III.; Peterson, H., Jr.; Williams, W. A.; Environmental Assessment; NRC; EM

    2002-01-01

    The deterministic multimedia dose/risk assessment codes RESRAD and RESRAD-BUILD have been widely used for many years for evaluation of sites contaminated with residual radioactive materials. The RESRAD code applies to the cleanup of sites (soils) and the RESRAD-BUILD code applies to the cleanup of buildings and structures. This work describes the procedure used to enhance the deterministic RESRAD and RESRAD-BUILD codes for probabilistic dose analysis. A six-step procedure was used in developing default parameter distributions and the probabilistic analysis modules. These six steps include (1) listing and categorizing parameters; (2) ranking parameters; (3) developing parameter distributions; (4) testing parameter distributions for probabilistic analysis; (5) developing probabilistic software modules; and (6) testing probabilistic modules and integrated codes. The procedures used can be applied to the development of other multimedia probabilistic codes. The probabilistic versions of RESRAD and RESRAD-BUILD codes provide tools for studying the uncertainty in dose assessment caused by uncertain input parameters. The parameter distribution data collected in this work can also be applied to other multimedia assessment tasks and multimedia computer codes.

  15. Determining the Effectiveness of the 3D Alice Programming Environment at the Computer Science I Level

    ERIC Educational Resources Information Center

    Sykes, Edward R.

    2007-01-01

    Student retention in Computer Science is becoming a serious concern among Educators in many colleges and universities. Most institutions currently face a significant drop in enrollment in Computer Science. A number of different tools and strategies have emerged to address this problem (e.g., BlueJ, Karel Robot, etc.). Although these tools help to…

  16. Generating virtual textile composite specimens using statistical data from micro-computed tomography: 3D tow representations

    NASA Astrophysics Data System (ADS)

    Rinaldi, Renaud G.; Blacklock, Matthew; Bale, Hrishikesh; Begley, Matthew R.; Cox, Brian N.

    2012-08-01

    Recent work presented a Monte Carlo algorithm based on Markov Chain operators for generating replicas of textile composite specimens that possess the same statistical characteristics as specimens imaged using high resolution x-ray computed tomography. That work represented the textile reinforcement by one-dimensional tow loci in three-dimensional space, suitable for use in the Binary Model of textile composites. Here analogous algorithms are used to generate solid, three-dimensional (3D) tow representations, to provide geometrical models for more detailed failure analyses. The algorithms for generating 3D models are divided into those that refer to the topology of the textile and those that deal with its geometry. The topological rules carry all the information that distinguishes textiles with different interlacing patterns (weaves, braids, etc.) and provide instructions for resolving interpenetrations or ordering errors among tows. They also simplify writing a single computer program that can accept input data for generic textile cases. The geometrical rules adjust the shape and smoothness of the generated virtual specimens to match data from imaged specimens. The virtual specimen generator is illustrated using data for an angle interlock weave, a common 3D textile architecture.

  17. 3-D parallel program for numerical calculation of gas dynamics problems with heat conductivity on distributed memory computational systems (CS)

    SciTech Connect

    Sofronov, I.D.; Voronin, B.L.; Butnev, O.I.

    1997-12-31

    The aim of the work performed is to develop a 3D parallel program for numerical calculation of gas dynamics problem with heat conductivity on distributed memory computational systems (CS), satisfying the condition of numerical result independence from the number of processors involved. Two basically different approaches to the structure of massive parallel computations have been developed. The first approach uses the 3D data matrix decomposition reconstructed at temporal cycle and is a development of parallelization algorithms for multiprocessor CS with shareable memory. The second approach is based on using a 3D data ma