Science.gov

Sample records for 3-d shape measurement

  1. Superfast 3D absolute shape measurement using five binary patterns

    NASA Astrophysics Data System (ADS)

    Hyun, Jae-Sang; Zhang, Song

    2017-03-01

    This paper presents a method that recovers high-quality 3D absolute coordinates point by point with only five binary patterns. Specifically, three dense binary dithered patterns are used to compute the wrapped phase; and the average intensity is combined with two additional binary patterns to determine fringe order pixel by pixel in phase domain. The wrapped phase is temporarily unwrapped point by point by referring to the fringe order. We further developed a computational framework to reduce random noise impact due to dithering, defocusing and random noise. Since only five binary fringe patterns are required to recover one 3D frame, extremely high speed 3D shape measurement can be achieved. For example, we developed a system that captures 2D images at 3333 Hz, and thus performs 3D shape measurement at 667 Hz.

  2. 3D shape measurement with phase correlation based fringe projection

    NASA Astrophysics Data System (ADS)

    Kühmstedt, Peter; Munckelt, Christoph; Heinze, Matthias; Bräuer-Burchardt, Christian; Notni, Gunther

    2007-06-01

    Here we propose a method for 3D shape measurement by means of phase correlation based fringe projection in a stereo arrangement. The novelty in the approach is characterized by following features. Correlation between phase values of the images of two cameras is used for the co-ordinate calculation. This work stands in contrast to the sole usage of phase values (phasogrammetry) or classical triangulation (phase values and image co-ordinates - camera raster values) for the determination of the co-ordinates. The method's main advantage is the insensitivity of the 3D-coordinates from the absolute phase values. Thus it prevents errors in the determination of the co-ordinates and improves robustness in areas with interreflections artefacts and inhomogeneous regions of intensity. A technical advantage is the fact that the accuracy of the 3D co-ordinates does not depend on the projection resolution. Thus the achievable quality of the 3D co-ordinates can be selectively improved by the use of high quality camera lenses and can participate in improvements in modern camera technologies. The presented new solution of the stereo based fringe projection with phase correlation makes a flexible, errortolerant realization of measuring systems within different applications like quality control, rapid prototyping, design and CAD/CAM possible. In the paper the phase correlation method will be described in detail. Furthermore, different realizations will be shown, i.e. a mobile system for the measurement of large objects and an endoscopic like system for CAD/CAM in dental industry.

  3. 3D shape measurement with thermal pattern projection

    NASA Astrophysics Data System (ADS)

    Brahm, Anika; Reetz, Edgar; Schindwolf, Simon; Correns, Martin; Kühmstedt, Peter; Notni, Gunther

    2016-12-01

    Structured light projection techniques are well-established optical methods for contactless and nondestructive three-dimensional (3D) measurements. Most systems operate in the visible wavelength range (VIS) due to commercially available projection and detection technology. For example, the 3D reconstruction can be done with a stereo-vision setup by finding corresponding pixels in both cameras followed by triangulation. Problems occur, if the properties of object materials disturb the measurements, which are based on the measurement of diffuse light reflections. For example, there are existing materials in the VIS range that are too transparent, translucent, high absorbent, or reflective and cannot be recorded properly. To overcome these challenges, we present an alternative thermal approach that operates in the infrared (IR) region of the electromagnetic spectrum. For this purpose, we used two cooled mid-wave (MWIR) cameras (3-5 μm) to detect emitted heat patterns, which were introduced by a CO2 laser. We present a thermal 3D system based on a GOBO (GOes Before Optics) wheel projection unit and first 3D analyses for different system parameters and samples. We also show a second alternative approach based on an incoherent (heat) source, to overcome typical disadvantages of high-power laser-based systems, such as industrial health and safety considerations, as well as high investment costs. Thus, materials like glass or fiber-reinforced composites can be measured contactless and without the need of additional paintings.

  4. An optical real-time 3D measurement for analysis of facial shape and movement

    NASA Astrophysics Data System (ADS)

    Zhang, Qican; Su, Xianyu; Chen, Wenjing; Cao, Yiping; Xiang, Liqun

    2003-12-01

    Optical non-contact 3-D shape measurement provides a novel and useful tool for analysis of facial shape and movement in presurgical and postsurgical regular check. In this article we present a system, which allows a precise 3-D visualization of the patient's facial before and after craniofacial surgery. We discussed, in this paper, the real time 3-D image capture, processing and the 3-D phase unwrapping method to recover complex shape deformation when the movement of the mouth. The result of real-time measurement for facial shape and movement will be helpful for the more ideal effect in plastic surgery.

  5. Status of 3D Ice Shape Measurement Effort

    NASA Technical Reports Server (NTRS)

    Lee, Sam

    2011-01-01

    (1) Main goal of the Airframe Icing Technical Challenge is to achieve acceptance of experimental and computational icing simulation tools -SupercooledLarge Droplet Icing (SLD) conditions -3D airframe components including swept wings; (2) It is necessary to develop suitable means of recording and archiving fully 3D descriptions of experimental ice accretion geometry; (3) Past research has shown that commercial laser scanners have the potential to be adapted to this task; and (4) A research plan has been developed to implement and validate the use of this technology for experimental ice accretions.

  6. Modulation measuring profilometry with cross grating projection and single shot for dynamic 3D shape measurement

    NASA Astrophysics Data System (ADS)

    Lu, Mingteng; Su, Xianyu; Cao, Yiping; You, Zhisheng; Zhong, Min

    2016-12-01

    In order to determine Dynamic 3-D shape with vertical measurement mode, a fast modulation measuring profilometry (MMP) with a cross grating projection and single shot is proposed. Unlike the previous methods, in our current projection system, one cross grating is projected by a special projection lens consisting of a common projection lens and a cylindrical lens. Due to the characteristics of cylindrical lens, the image of the vertical component and the horizontal component of the cross grating is separated in the image space, and the measuring range is just the space between the two image planes. Through a beam splitter, the CCD camera can coaxially capture the fringe pattern of the cross grating modulated by the testing object's shape. In one fringe pattern, by applying Fourier transform, filtering and inverse Fourier transform, the modulation corresponding to the vertical and horizontal components of the cross grating can be obtained respectively. Then the 3-D shape of the object can be reconstructed according to the mapping relationship between modulation and height, which was established by calibration process in advance. So the 3-D shape information can be recorded at the same speed of the frame rate of the CCD camera. This paper gives the principle of the proposed method and the set-up for measuring experiment and system calibration. The 3-D shape of a still object and a dynamic process of liquid vortex were measured and reconstructed in the experiments, and the results proved the method's feasibility. The advantage of the proposed method is that only one fringe pattern is needed to extract the modulation distribution and to reconstruct the 3-D shape of the object. Therefore, the proposed method can achieve high speed measurement and vertical measurement without shadow and occlusion. It can be used in the dynamic 3-D shape measurement and vibration analysis.

  7. 3D surface measurements with isogeometric stereocorrelation-Application to complex shapes

    NASA Astrophysics Data System (ADS)

    Dufour, John-Eric; Leclercq, Sylvain; Schneider, Julien; Roux, Stéphane; Hild, François

    2016-12-01

    The aim of the present study is to measure complex shapes of tested objects by using a priori information given by their CAD model via stereocorrelation. To follow a 3D object during its deformation and to determine 3D surface displacement fields, a first measurement of the object shape is necessary. It is achieved by updating the CAD reference via a global approach to stereocorrelation. Once the 3D shape has been determined, the next step is to measure 3D displacement fields during loading. The kinematics of the deformed shape is assumed to be written within the same isogeometric framework. Isogeometric stereocorrelation is applied to analyze a compression test on a ribbed cylinder in two different configurations of the stereo rig.

  8. Fast 3D shape measurement using Fourier transform profilometry without phase unwrapping

    NASA Astrophysics Data System (ADS)

    Song, Kechen; Hu, Shaopeng; Wen, Xin; Yan, Yunhui

    2016-09-01

    This paper presents a novel, simple, yet fast 3D shape measurement method using Fourier transform profilometry. Different from the conventional Fourier transform profilometry, this proposed method introduces the binocular stereo vision and employs two image pairs (i.e., original image pairs and fringe image pairs) to restructure 3D shape. In this proposed method, instead of phase unwrapping algorithm, a coarse disparity map is adopted as a constraint condition to realize phase matching using wrapped phase. Since the local phase matching and sub-pixel disparity refinement are proposed to obtain high measuring accuracy, high-quality phase is not required. The validity of the proposed method is verified by experiments.

  9. A measurement method for micro 3D shape based on grids-processing and stereovision technology

    NASA Astrophysics Data System (ADS)

    Li, Chuanwei; Liu, Zhanwei; Xie, Huimin

    2013-04-01

    An integrated measurement method for micro 3D surface shape by a combination of stereovision technology in a scanning electron microscope (SEM) and grids-processing methodology is proposed. The principle of the proposed method is introduced in detail. By capturing two images of the tested specimen with grids on the surface at different tilt angles in an SEM, the 3D surface shape of the specimen can be obtained. Numerical simulation is applied to analyze the feasibility of the proposed method. A validation experiment is performed here. The surface shape of the metal-wire/polymer-membrane structures with thermal deformation is reconstructed. By processing the surface grids of the specimen, the out-of-plane displacement field of the specimen surface is also obtained. Compared with the measurement results obtained by a 3D digital microscope, the experimental error of the proposed method is discussed

  10. Full-field 3D shape measurement of specular surfaces by direct phase to depth relationship

    NASA Astrophysics Data System (ADS)

    Zhang, Zonghua; Liu, Yue; Huang, Shujun; Niu, Zhenqi; Guo, Jiao; Gao, Nan; Gao, Feng; Jiang, Xiangqian

    2016-11-01

    This paper presents a new Phase Measuring Deflectometry (PMD) method to measure specular object having discontinuous surfaces. A mathematical model is established to directly relate absolute phase and depth, instead of phase and gradient. Based on the model, a hardware measuring system has been set up, which consists of a beam splitter to change the optical path, and two LCD screens to display the same sinusoidal fringe patterns. By using model-based and machine vision method, system calibration is accomplished to provide the required parameters and conditions. The verification tests are given to evaluate the effectiveness of the developed system. The 3D shape of an artificial step having multiple specular surfaces and a concave mirror has been measured. Initial experimental results show that the proposed measurement method can obtain 3D shape of specular objects with discontinuous surface effectively.

  11. Real-time, high-accuracy 3D imaging and shape measurement.

    PubMed

    Nguyen, Hieu; Nguyen, Dung; Wang, Zhaoyang; Kieu, Hien; Le, Minh

    2015-01-01

    In spite of the recent advances in 3D shape measurement and geometry reconstruction, simultaneously achieving fast-speed and high-accuracy performance remains a big challenge in practice. In this paper, a 3D imaging and shape measurement system is presented to tackle such a challenge. The fringe-projection-profilometry-based system employs a number of advanced approaches, such as: composition of phase-shifted fringe patterns, externally triggered synchronization of system components, generalized system setup, ultrafast phase-unwrapping algorithm, flexible system calibration method, robust gamma correction scheme, multithread computation and processing, and graphics-processing-unit-based image display. Experiments have shown that the proposed system can acquire and display high-quality 3D reconstructed images and/or video stream at a speed of 45 frames per second with relative accuracy of 0.04% or at a reduced speed of 22.5 frames per second with enhanced accuracy of 0.01%. The 3D imaging and shape measurement system shows great promise of satisfying the ever-increasing demands of scientific and engineering applications.

  12. Development and application of 3-D foot-shape measurement system under different loads

    NASA Astrophysics Data System (ADS)

    Liu, Guozhong; Wang, Boxiong; Shi, Hui; Luo, Xiuzhi

    2008-03-01

    The 3-D foot-shape measurement system under different loads based on laser-line-scanning principle was designed and the model of the measurement system was developed. 3-D foot-shape measurements without blind areas under different loads and the automatic extraction of foot-parameter are achieved with the system. A global calibration method for CCD cameras using a one-axis motion unit in the measurement system and the specialized calibration kits is presented. Errors caused by the nonlinearity of CCD cameras and other devices and caused by the installation of the one axis motion platform, the laser plane and the toughened glass plane can be eliminated by using the nonlinear coordinate mapping function and the Powell optimized method in calibration. Foot measurements under different loads for 170 participants were conducted and the statistic foot parameter measurement results for male and female participants under non-weight condition and changes of foot parameters under half-body-weight condition, full-body-weight condition and over-body-weight condition compared with non-weight condition are presented. 3-D foot-shape measurement under different loads makes it possible to realize custom-made shoe-making and shows great prosperity in shoe design, foot orthopaedic treatment, shoe size standardization, and establishment of a feet database for consumers and athletes.

  13. Performance analysis of 3-D shape measurement algorithm with a short baseline projector-camera system.

    PubMed

    Liu, Jianyang; Li, Youfu

    A number of works for 3-D shape measurement based on structured light have been well-studied in the last decades. A common way to model the system is to use the binocular stereovision-like model. In this model, the projector is treated as a camera, thus making a projector-camera-based system unified with a well-established traditional binocular stereovision system. After calibrating the projector and camera, a 3-D shape information is obtained by conventional triangulation. However, in such a stereovision-like system, the short baseline problem exists and limits the measurement accuracy. Hence, in this work, we present a new projecting-imaging model based on fringe projection profilometry (FPP). In this model, we first derive a rigorous mathematical relationship that exists between the height of an object's surface, the phase difference distribution map, and the parameters of the setup. Based on this model, we then study the problem of how the uncertainty of relevant parameters, particularly the baseline's length, affects the 3-D shape measurement accuracy using our proposed model. We provide an extensive uncertainty analysis on the proposed model through partial derivative analysis, relative error analysis, and sensitivity analysis. Moreover, the Monte Carlo simulation experiment is also conducted which shows that the measurement performance of the projector-camera system has a short baseline.

  14. 3D shape measurement of shoeprint impression with structured illumination and fringe pattern analysis

    NASA Astrophysics Data System (ADS)

    Su, Xianyu; Cao, Yiping; Xiang, Liqun; Chen, Wenjing

    2002-06-01

    The shoeprint impressions of suspect left at the crime scene can sometimes tell investigators what type of shoes to be looked for. These shoeprint impressions as one of the important evidence are useful in the detection of criminals. In this paper we propose a novel technique for identifying and analyzing the 3D characteristics of shoeprint impressions. We also design 3D shoeprint impression analysis system based on the combination the 3D shape measurement with structured illumination and fringe pattern analysis. We give a detail discussion on the principle and configuration of the system. Laboratory experiments show the technique is efficient in the detection of shoeprint and in the offering the reference for judicial evidence.

  15. Digital holographic measurements of shape and 3D sound-induced displacements of Tympanic Membrane

    PubMed Central

    Lu, Weina; Dobrev, Ivo; Cheng, Jeffrey Tao; Furlong, Cosme; Rosowski, John J

    2014-01-01

    Acoustically-induced vibrations of the Tympanic Membrane (TM) play a primary role in the hearing process, in that these motions are the initial mechanical response of the ear to airborne sound. Characterization of the shape and 3D displacement patterns of the TM is a crucial step to a better understanding of the complicated mechanics of sound reception by the ear. In this paper, shape and sound-induced 3D displacements of the TM in cadaveric chinchillas are measured by a lensless Dual-Wavelength Digital Holography system (DWDHS). The DWDHS consists of Laser Delivery (LD), Optical Head (OH), and Computing Platform (CP) subsystems. Shape measurements are performed in double-exposure mode and with the use of two wavelengths of a tunable laser while nanometer-scale displacements are measured along a single sensitivity direction and with a constant wavelength. In order to extract the three principal components of displacement in full-field-of-view, and taking into consideration the anatomical dimensions of the TM, we combine principles of thin-shell theory together with both, displacement measurements along the single sensitivity vector and TM surface shape. To computationally test this approach, Finite Element Methods (FEM) are applied to the study of artificial geometries. PMID:24790255

  16. New 3-D vision-sensor for shape-measurement applications

    NASA Astrophysics Data System (ADS)

    Moring, Ilkka; Myllyla, Risto A.; Honkanen, Esa; Kaisto, Ilkka P.; Kostamovaara, Juha T.; Maekynen, Anssi J.; Manninen, Markku

    1990-04-01

    In this paper we describe a new 3D-vision sensor developed in cooperation with the Technical Research Centre of Finland, the University of Oulu, and Prometrics Oy Co. The sensor is especially intended for the non-contact measurement of the shapes and dimensions of large industrial objects. It consists of a pulsed time-of-flight laser rangefinder, a target point detection system, a mechanical scanner, and a PC-based computer system. Our 3D-sensor has two operational modes: one for range image acquisition and the other for the search and measurement of single coordinate points. In the range image mode a scene is scanned and a 3D-image of the desired size is obtained. In the single point mode the sensor automatically searches for cooperative target points on the surface of an object and measures their 3D-coordinates. This mode can be used, e.g. for checking the dimensions of objects and for calibration. The results of preliminary performance tests are presented in the paper.

  17. 3D shape measurement of optical free-form surface based on fringe projection

    NASA Astrophysics Data System (ADS)

    Li, Shaohui; Liu, Shugui; Zhang, Hongwei

    2011-05-01

    Present a novel method of 3D shape measurement of optical free-from surface based on fringe projection. A virtual reference surface is proposed which can be used to improve the detection efficiency and realize the automation of measuring process. Sinusoidal fringe patterns are projected to the high reflected surface of the measured object. The deflection fringe patterns that modulated by the object surface are captured by the CCD camera. The slope information can be obtained by analyzing the relationship between the phase deflectometry and the slope of the object surface. The wave-front reconstruction method is used to reconstruct the surface. With the application of fringe projection technology the accuracy of optical free-form surfaces measurement could reach the level of tens of micrometer or even micrometer.

  18. Enhanced high dynamic range 3D shape measurement based on generalized phase-shifting algorithm

    NASA Astrophysics Data System (ADS)

    Wang, Minmin; Du, Guangliang; Zhou, Canlin; Zhang, Chaorui; Si, Shuchun; Li, Hui; Lei, Zhenkun; Li, YanJie

    2017-02-01

    Measuring objects with large reflectivity variations across their surface is one of the open challenges in phase measurement profilometry (PMP). Saturated or dark pixels in the deformed fringe patterns captured by the camera will lead to phase fluctuations and errors. Jiang et al. proposed a high dynamic range real-time three-dimensional (3D) shape measurement method (Jiang et al., 2016) [17] that does not require changing camera exposures. Three inverted phase-shifted fringe patterns are used to complement three regular phase-shifted fringe patterns for phase retrieval whenever any of the regular fringe patterns are saturated. Nonetheless, Jiang's method has some drawbacks: (1) the phases of saturated pixels are estimated by different formulas on a case by case basis; in other words, the method lacks a universal formula; (2) it cannot be extended to the four-step phase-shifting algorithm, because inverted fringe patterns are the repetition of regular fringe patterns; (3) for every pixel in the fringe patterns, only three unsaturated intensity values can be chosen for phase demodulation, leaving the other unsaturated ones idle. We propose a method to enhance high dynamic range 3D shape measurement based on a generalized phase-shifting algorithm, which combines the complementary techniques of inverted and regular fringe patterns with a generalized phase-shifting algorithm. Firstly, two sets of complementary phase-shifted fringe patterns, namely the regular and the inverted fringe patterns, are projected and collected. Then, all unsaturated intensity values at the same camera pixel from two sets of fringe patterns are selected and employed to retrieve the phase using a generalized phase-shifting algorithm. Finally, simulations and experiments are conducted to prove the validity of the proposed method. The results are analyzed and compared with those of Jiang's method, demonstrating that our method not only expands the scope of Jiang's method, but also improves

  19. 3D shape reconstruction of specular surfaces by using phase measuring deflectometry

    NASA Astrophysics Data System (ADS)

    Zhou, Tian; Chen, Kun; Wei, Haoyun; Li, Yan

    2016-10-01

    The existing estimation methods for recovering height information from surface gradient are mainly divided into Modal and Zonal techniques. Since specular surfaces used in the industry always have complex and large areas, considerations must be given to both the improvement of measurement accuracy and the acceleration of on-line processing speed, which beyond the capacity of existing estimations. Incorporating the Modal and Zonal approaches into a unifying scheme, we introduce an improved 3D shape reconstruction version of specular surfaces based on Phase Measuring Deflectometry in this paper. The Modal estimation is firstly implemented to derive the coarse height information of the measured surface as initial iteration values. Then the real shape can be recovered utilizing a modified Zonal wave-front reconstruction algorithm. By combining the advantages of Modal and Zonal estimations, the proposed method simultaneously achieves consistently high accuracy and dramatically rapid convergence. Moreover, the iterative process based on an advanced successive overrelaxation technique shows a consistent rejection of measurement errors, guaranteeing the stability and robustness in practical applications. Both simulation and experimentally measurement demonstrate the validity and efficiency of the proposed improved method. According to the experimental result, the computation time decreases approximately 74.92% in contrast to the Zonal estimation and the surface error is about 6.68 μm with reconstruction points of 391×529 pixels of an experimentally measured sphere mirror. In general, this method can be conducted with fast convergence speed and high accuracy, providing an efficient, stable and real-time approach for the shape reconstruction of specular surfaces in practical situations.

  20. Embedded 3D shape measurement system based on a novel spatio-temporal coding method

    NASA Astrophysics Data System (ADS)

    Xu, Bin; Tian, Jindong; Tian, Yong; Li, Dong

    2016-11-01

    Structured light measurement has been wildly used since 1970s in industrial component detection, reverse engineering, 3D molding, robot navigation, medical and many other fields. In order to satisfy the demand for high speed, high precision and high resolution 3-D measurement for embedded system, a new patterns combining binary and gray coding principle in space are designed and projected onto the object surface orderly. Each pixel corresponds to the designed sequence of gray values in time - domain, which is treated as a feature vector. The unique gray vector is then dimensionally reduced to a scalar which could be used as characteristic information for binocular matching. In this method, the number of projected structured light patterns is reduced, and the time-consuming phase unwrapping in traditional phase shift methods is avoided. This algorithm is eventually implemented on DM3730 embedded system for 3-D measuring, which consists of an ARM and a DSP core and has a strong capability of digital signal processing. Experimental results demonstrated the feasibility of the proposed method.

  1. Non-destructive 3D shape measurement of transparent and black objects with thermal fringes

    NASA Astrophysics Data System (ADS)

    Brahm, Anika; Rößler, Conrad; Dietrich, Patrick; Heist, Stefan; Kühmstedt, Peter; Notni, Gunther

    2016-05-01

    Fringe projection is a well-established optical method for the non-destructive contactless three-dimensional (3D) measurement of object surfaces. Typically, fringe sequences in the visible wavelength range (VIS) are projected onto the surfaces of objects to be measured and are observed by two cameras in a stereo vision setup. The reconstruction is done by finding corresponding pixels in both cameras followed by triangulation. Problems can occur if the properties of some materials disturb the measurements. If the objects are transparent, translucent, reflective, or strongly absorbing in the VIS range, the projected patterns cannot be recorded properly. To overcome these challenges, we present a new alternative approach in the infrared (IR) region of the electromagnetic spectrum. For this purpose, two long-wavelength infrared (LWIR) cameras (7.5 - 13 μm) are used to detect the emitted heat radiation from surfaces which is induced by a pattern projection unit driven by a CO2 laser (10.6 μm). Thus, materials like glass or black objects, e.g. carbon fiber materials, can be measured non-destructively without the need of any additional paintings. We will demonstrate the basic principles of this heat pattern approach and show two types of 3D systems based on a freeform mirror and a GOBO wheel (GOes Before Optics) projector unit.

  2. Combination of 3-D deformation and shape measurement by electronic speckle pattern interferometry for quantitative strain-stress analysis

    NASA Astrophysics Data System (ADS)

    Ettemeyer, Andreas

    2000-01-01

    Laser speckle interferometry as a full-field noncontact measuring technique offers interesting opportunities for strain-stress analysis on components. While its application in material testing and material research has already achieved some acceptance in research and industry, its application to complex industrial components like car bodies, gear boxes, engines, and suspensions has been limited. Basic difficulties have arisen from the relatively large rigid-body movements of components under test, harsh environmental conditions in the real test world, and the often complex shape of the analyzed component, especially in the most interesting areas. The commercial availability of a radically miniaturized 3D speckle interferometer has led to the new laser-optical measuring device, the MicroStarTM, which can be used for quantitative strain-stress measurement on nearly any industrial component. The device uses 3D speckle interferometry to measure the shape and the 3D deformation in the area of interest. The combination of shape and deformation provides all necessary data for quantitative 3D strain analysis. The principle stresses as well as the bending and tensile components of the strains can be easily determined. In this paper, the principle and applications of this new system are presented.

  3. Reliability of trunk shape measurements based on 3-D surface reconstructions

    PubMed Central

    Cheriet, Farida; Danserau, Jean; Ronsky, Janet; Zernicke, Ronald F.; Labelle, Hubert

    2007-01-01

    This study aimed to estimate the reliability of 3-D trunk surface measurements for the characterization of external asymmetry associated with scoliosis. Repeated trunk surface acquisitions using the Inspeck system (Inspeck Inc., Montreal, Canada), with two different postures A (anatomical position) and B (‘‘clavicle’’ position), were obtained from patients attending a scoliosis clinic. For each acquisition, a 3-D model of the patient’s trunk was built and a series of measurements was computed. For each measure and posture, intraclass correlation coefficients (ICC) were obtained using a bivariate analysis of variance, and the smallest detectable difference was calculated. For posture A, reliability was fair to excellent with ICC from 0.91 to 0.99 (0.85 to 0.99 for the lower bound of the 95% confidence interval). For posture B, the ICC was 0.85 to 0.98 (0.74 to 0.99 for the lower bound of the 95% confidence interval). The smallest statistically significant differences for the maximal back surface rotation was 2.5 and 1.5° for the maximal trunk rotation. Apparent global asymmetry and axial trunk rotation indices were relatively robust to changes in arm posture, both in terms of mean values and within-subject variations, and also showed a good reliability. Computing measurements from cross-sectional analysis enabled a reduction in errors compared to the measurements based on markers’ position. Although not yet sensitive enough to detect small changes for monitoring of curve natural progression, trunk surface analysis can help to document the external asymmetry associated with different types of spinal curves as well as the cosmetic improvement obtained after surgical interventions. The anatomical posture is slightly more reliable as it allows a better coverage of the trunk surface by the digitizing system. PMID:17701228

  4. High-quality 3D shape measurement using saturated fringe patterns

    NASA Astrophysics Data System (ADS)

    Chen, Bo; Zhang, Song

    2016-12-01

    This paper proposes a method to potentially conquer one of the challenges in the optical metrology community: optically measuring three-dimensional (3D) objects with high surface contrast. We discover that for digitally equally phase-shifted fringe patterns, if the fringe period P is an even number, the N = P / 2 × k , (k=1, 2, 3, …) step algorithm can accurately recover phase even if the fringe patterns are saturated; and if P is an odd number, N = P × k step algorithm can also accurately recover phase even if the fringe patterns are saturated. This finding leads to a novel method to optically measure shiny surfaces, where the saturation due to surface shininess could be substantially alleviated. Both simulations and experiments successfully verified the proposed method.

  5. Sensor for In-Motion Continuous 3D Shape Measurement Based on Dual Line-Scan Cameras

    PubMed Central

    Sun, Bo; Zhu, Jigui; Yang, Linghui; Yang, Shourui; Guo, Yin

    2016-01-01

    The acquisition of three-dimensional surface data plays an increasingly important role in the industrial sector. Numerous 3D shape measurement techniques have been developed. However, there are still limitations and challenges in fast measurement of large-scale objects or high-speed moving objects. The innovative line scan technology opens up new potentialities owing to the ultra-high resolution and line rate. To this end, a sensor for in-motion continuous 3D shape measurement based on dual line-scan cameras is presented. In this paper, the principle and structure of the sensor are investigated. The image matching strategy is addressed and the matching error is analyzed. The sensor has been verified by experiments and high-quality results are obtained. PMID:27869731

  6. Sensor for In-Motion Continuous 3D Shape Measurement Based on Dual Line-Scan Cameras.

    PubMed

    Sun, Bo; Zhu, Jigui; Yang, Linghui; Yang, Shourui; Guo, Yin

    2016-11-18

    The acquisition of three-dimensional surface data plays an increasingly important role in the industrial sector. Numerous 3D shape measurement techniques have been developed. However, there are still limitations and challenges in fast measurement of large-scale objects or high-speed moving objects. The innovative line scan technology opens up new potentialities owing to the ultra-high resolution and line rate. To this end, a sensor for in-motion continuous 3D shape measurement based on dual line-scan cameras is presented. In this paper, the principle and structure of the sensor are investigated. The image matching strategy is addressed and the matching error is analyzed. The sensor has been verified by experiments and high-quality results are obtained.

  7. A dual-frequency fringe projection three-dimensional shape measurement system using a DLP 3D projector

    NASA Astrophysics Data System (ADS)

    Dai, Meiling; Yang, Fujun; Liu, Cong; He, Xiaoyuan

    2017-01-01

    A dual-frequency fringe projection system for three-dimensional (3D) surface shape measurement is proposed in this paper. The system includes two cameras, a DLP 3D projector, and a liquid crystal (LC) shutter glasses. The phase information related to the object height is obtained from the dual-frequency temporal method with 3-step phase-shifting algorithm. By using the DLP 3D projector and LC shutter glasses, 3-step phase-shifting high-frequency and low-frequency fringe patterns are captured only 3 times by the two cameras synchronously. The technique of image registration is applied to low-frequency fringe patterns to guarantee the accuracy of low-frequency phase for high-frequency phase unwrapping. Using the equi-phase coordinate method based on two reference planes, the phase-to-height conversion and non-sinusoidal errors reduction are carried out in one go without any extra operation or measurement time. Experimental results demonstrate that the proposed method effectively improves the measuring speed, and it is valid for measuring surface shapes with multi-steps or discontinuities.

  8. High-resolution real-time 3D shape measurement on a portable device

    NASA Astrophysics Data System (ADS)

    Karpinsky, Nikolaus; Hoke, Morgan; Chen, Vincent; Zhang, Song

    2013-09-01

    Recent advances in technology have enabled the acquisition of high-resolution 3D models in real-time though the use of structured light scanning techniques. While these advances are impressive, they require large amounts of computing power, thus being limited to using large desktop computers with high end CPUs and sometimes GPUs. This is undesirable in making high-resolution real-time 3D scanners ubiquitous in our mobile lives. To address this issue, this work describes and demonstrates a real-time 3D scanning system that is realized on a mobile device, namely a laptop computer, which can achieve speeds of 20fps 3D at a resolution of 640x480 per frame. By utilizing a graphics processing unit (GPU) as a multipurpose parallel processor, along with a parallel phase shifting technique, we are able to realize the entire 3D processing pipeline in parallel. To mitigate high speed camera transfer problems, which typically require a dedicated frame grabber, we make use of USB 3.0 along with direct memory access (DMA) to transfer camera images to the GPU. To demonstrate the effectiveness of the technique, we experiment with the scanner on both static geometry of a statue and dynamic geometry of a deforming material sample in front of the system.

  9. 3D absolute shape measurement of live rabbit hearts with a superfast two-frequency phase-shifting technique

    PubMed Central

    Wang, Yajun; Laughner, Jacob I.; Efimov, Igor R.; Zhang, Song

    2013-01-01

    This paper presents a two-frequency binary phase-shifting technique to measure three-dimensional (3D) absolute shape of beating rabbit hearts. Due to the low contrast of the cardiac surface, the projector and the camera must remain focused, which poses challenges for any existing binary method where the measurement accuracy is low. To conquer this challenge, this paper proposes to utilize the optimal pulse width modulation (OPWM) technique to generate high-frequency fringe patterns, and the error-diffusion dithering technique to produce low-frequency fringe patterns. Furthermore, this paper will show that fringe patterns produced with blue light provide the best quality measurements compared to fringe patterns generated with red or green light; and the minimum data acquisition speed for high quality measurements is around 800 Hz for a rabbit heart beating at 180 beats per minute. PMID:23482151

  10. 3D shape and eccentricity measurements of fast rotating rough objects by two mutually tilted interference fringe systems

    NASA Astrophysics Data System (ADS)

    Czarske, J. W.; Kuschmierz, R.; Günther, P.

    2013-06-01

    Precise measurements of distance, eccentricity and 3D-shape of fast moving objects such as turning parts of lathes, gear shafts, magnetic bearings, camshafts, crankshafts and rotors of vacuum pumps are on the one hand important tasks. On the other hand they are big challenges, since contactless precise measurement techniques are required. Optical techniques are well suitable for distance measurements of non-moving surfaces. However, measurements of laterally fast moving surfaces are still challenging. For such tasks the laser Doppler distance sensor technique was invented by the TU Dresden some years ago. This technique has been realized by two mutually tilted interference fringe systems, where the distance is coded in the phase difference between the generated interference signals. However, due to the speckle effect different random envelopes and phase jumps of the interference signals occur. They disturb the phase difference estimation between the interference signals. In this paper, we will report on a scientific breakthrough on the measurement uncertainty budget which has been achieved recently. Via matching of the illumination and receiving optics the measurement uncertainty of the displacement and distance can be reduced by about one magnitude. For displacement measurements of a recurring rough surface a standard deviation of 110 nm were attained at lateral velocities of 5 m / s. Due to the additionally measured lateral velocity and the rotational speed, the two-dimensional shape of rotating objects is calculated. The three-dimensional shape can be conducted by employment of a line camera. Since the measurement uncertainty of the displacement, vibration, distance, eccentricity, and shape is nearly independent of the lateral surface velocity, this technique is predestined for fast-rotating objects. Especially it can be advantageously used for the quality control of workpieces inside of a lathe towards the reduction of process tolerances, installation times and

  11. Improved grid-noise removal in single-frame digital moiré 3D shape measurement

    NASA Astrophysics Data System (ADS)

    Mohammadi, Fatemeh; Kofman, Jonathan

    2016-11-01

    A single-frame grid-noise removal technique was developed for application in single-frame digital-moiré 3D shape measurement. The ability of the stationary wavelet transform (SWT) to prevent oscillation artifacts near discontinuities, and the ability of the Fourier transform (FFT) applied to wavelet coefficients to separate grid-noise from useful image information, were combined in a new technique, SWT-FFT, to remove grid-noise from moiré-pattern images generated by digital moiré. In comparison to previous grid-noise removal techniques in moiré, SWT-FFT avoids the requirement for mechanical translation of optical components and capture of multiple frames, to enable single-frame moiré-based measurement. Experiments using FFT, Discrete Wavelet Transform (DWT), DWT-FFT, and SWT-FFT were performed on moiré-pattern images containing grid noise, generated by digital moiré, for several test objects. SWT-FFT had the best performance in removing high-frequency grid-noise, both straight and curved lines, minimizing artifacts, and preserving the moiré pattern without blurring and degradation. SWT-FFT also had the lowest noise amplitude in the reconstructed height and lowest roughness index for all test objects, indicating best grid-noise removal in comparison to the other techniques.

  12. 3D shape decomposition and comparison for gallbladder modeling

    NASA Astrophysics Data System (ADS)

    Huang, Weimin; Zhou, Jiayin; Liu, Jiang; Zhang, Jing; Yang, Tao; Su, Yi; Law, Gim Han; Chui, Chee Kong; Chang, Stephen

    2011-03-01

    This paper presents an approach to gallbladder shape comparison by using 3D shape modeling and decomposition. The gallbladder models can be used for shape anomaly analysis and model comparison and selection in image guided robotic surgical training, especially for laparoscopic cholecystectomy simulation. The 3D shape of a gallbladder is first represented as a surface model, reconstructed from the contours segmented in CT data by a scheme of propagation based voxel learning and classification. To better extract the shape feature, the surface mesh is further down-sampled by a decimation filter and smoothed by a Taubin algorithm, followed by applying an advancing front algorithm to further enhance the regularity of the mesh. Multi-scale curvatures are then computed on the regularized mesh for the robust saliency landmark localization on the surface. The shape decomposition is proposed based on the saliency landmarks and the concavity, measured by the distance from the surface point to the convex hull. With a given tolerance the 3D shape can be decomposed and represented as 3D ellipsoids, which reveal the shape topology and anomaly of a gallbladder. The features based on the decomposed shape model are proposed for gallbladder shape comparison, which can be used for new model selection. We have collected 19 sets of abdominal CT scan data with gallbladders, some shown in normal shape and some in abnormal shapes. The experiments have shown that the decomposed shapes reveal important topology features.

  13. Shape corrections for 3D EIT

    NASA Astrophysics Data System (ADS)

    Paridis, Kyriakos; Lionheart, William R. B.

    2010-04-01

    Movement of the boundary in biomedical Electrical Impedance Tomography (EIT) has been always a source of error in image reconstruction. In the case of pulmonary EIT, where the patient's chest shape changes during respiration, this is inevitable, so it is essential to be able to correct for shape changes and consequently avoid artifacts. Assuming that the conductivity is isotropic, an assumption that is reasonable for lung tissue but admittedly violated for muscle, the boundary shape up to a Möbius transformation (conformal mapping) as well as the conductivity can theoretically be determined by 3D EIT data. While in two dimensions the space of conformal mappings are infinite dimensional, in the three dimensional case the Möbius transformations are given by a finite number of parameters. In this paper, we concentrate on the three dimensional case and take a linear approximation. We will give results of numerical studies analogous to the two dimensional work of Boyle et al on the effect of electrode movement and shape error in 3D EIT.

  14. The Influence of Selected Parameters on Evaluation of the Geometrical Shape Deviation - Cylindricity in 3D Measuring Machine Workspace

    NASA Astrophysics Data System (ADS)

    Drbúl, Mário; Šajgalík, Michal; Litvaj, lvan; Babík, Ondrej

    2016-12-01

    Each part as a final product and its surface is composed of various geometric elements, although at first glance seem as smooth and shiny. During the manufacturing process, there is a number of influences (e.g. selected manufacturing technology, production process, human factors, the strategy of measurement, scanning speed, shape of the measurement contact tip, temperature, or the surface tension and the like), which hinder the production of component with ideally shaped elements. From the economic and design point of view (in accordance with determined GPS standards), there is necessary fast and accurate analyze and evaluate these elements. Presented article deals with the influence of scanning speed and measuring strategy for assessment of shape deviations.

  15. Computer-aided laser-optoelectronic OPTEL 3D measurement systems of complex-shaped object geometry

    NASA Astrophysics Data System (ADS)

    Galiulin, Ravil M.; Galiulin, Rishat M.; Bakirov, J. M.; Bogdanov, D. R.; Shulupin, C. O.; Khamitov, D. H.; Khabibullin, M. G.; Pavlov, A. F.; Ryabov, M. S.; Yamaliev, K. N.

    1996-03-01

    Technical characteristics, advantages and applications of automated optoelectronic measuring systems designed at the Regional Interuniversity Optoelectronic Systems Laboratory ('OPTEL') of Ufa State Aviation Technical University are given. The suggested range of systems is the result of the long-term scientific and research experiments, work on design and introduction work. The system can be applied in industrial development and research, in the field of high precision measurement of geometrical parameters in aerospace, robotic, etc., where non-contact and fast measurements of complicated shape objects made of various materials including brittle and plastic articles are required.

  16. Measured symmetry of facial 3D shape and perceived facial symmetry and attractiveness before and after orthognathic surgery.

    PubMed

    Ostwald, Julia; Berssenbrügge, Philipp; Dirksen, Dieter; Runte, Christoph; Wermker, Kai; Kleinheinz, Johannes; Jung, Susanne

    2015-05-01

    One aim of cranio-maxillo-facial surgery is to strive for an esthetical appearance. Do facial symmetry and attractiveness correlate? How are they affected by surgery? Within this study faces of patients with orthognathic surgery were captured and analyzed regarding their symmetry. A total of 25 faces of patients were measured three-dimensionally by an optical sensor using the fringe projection technique before and after orthognathic surgery. Based upon this data an asymmetry index was calculated for each case. In order to gather subjective ratings each face was presented to 100 independent test subjects in a 3D rotation sequence. Those were asked to rate the symmetry and the attractiveness of the faces. It was analyzed to what extend the ratings correlate with the measured asymmetry indices and whether pre- and post-surgical data differ. The measured asymmetry indices correlate significantly with the subjective ratings of both items. The measured symmetry as well as the rated symmetry and attractiveness increased on average after surgery. The increase of the ratings was even statistically significant. A larger enhancement of symmetry is achieved in pre-surgical strongly asymmetric faces than in rather symmetric faces.

  17. Optimized design of a LED-array-based TOF range imaging sensor for fast 3-D shape measurement

    NASA Astrophysics Data System (ADS)

    Wang, Huanqin; Wang, Ying; Xu, Jun; He, Deyong; Zhao, Tianpeng; Ming, Hai; Kong, Deyi

    2011-06-01

    A LED-array-based range imaging sensor using Time-of-Flight (TOF) distance measurement was developed to capture the depth information of three-dimensional (3-D) object. By time-division electronic scanning of the LED heterodyne phase-shift TOF range finders in array, the range images were fast obtained without any mechanical moving parts. The design of LED-array-based range imaging sensor was adequately described and a range imaging theoretical model based on photoelectric signal processing was built, which showed there was mutual restriction relationship among the measurement time of a depth pixel, the bandwidth of receiver and the sensor's signal-to-noise ratio (SNR). In order to improve the key parameters of sensor such as range resolution and measurement speed simultaneously, some optimized designs needed to be done for the proposed range imaging sensor, including choosing proper parameters for the filters in receiver, adopting special structure feedback automatic gain control (AGC) circuit with short response time, etc. The final experiment results showed the sensor after optimization could acquire the range images at a rate of 10 frames per second with a range resolution as high as +/-2mm in the range of 50-1200mm. The essential advantages of the proposed range imaging sensor were construction with simple structure, high range resolution, short measurement time and low cost, which was sufficient for many robotic and industrial automation applications.

  18. Alpha shape theory for 3D visualization and volumetric measurement of brain tumor progression using magnetic resonance images.

    PubMed

    Hamoud Al-Tamimi, Mohammed Sabbih; Sulong, Ghazali; Shuaib, Ibrahim Lutfi

    2015-07-01

    Resection of brain tumors is a tricky task in surgery due to its direct influence on the patients' survival rate. Determining the tumor resection extent for its complete information via-à-vis volume and dimensions in pre- and post-operative Magnetic Resonance Images (MRI) requires accurate estimation and comparison. The active contour segmentation technique is used to segment brain tumors on pre-operative MR images using self-developed software. Tumor volume is acquired from its contours via alpha shape theory. The graphical user interface is developed for rendering, visualizing and estimating the volume of a brain tumor. Internet Brain Segmentation Repository dataset (IBSR) is employed to analyze and determine the repeatability and reproducibility of tumor volume. Accuracy of the method is validated by comparing the estimated volume using the proposed method with that of gold-standard. Segmentation by active contour technique is found to be capable of detecting the brain tumor boundaries. Furthermore, the volume description and visualization enable an interactive examination of tumor tissue and its surrounding. Admirable features of our results demonstrate that alpha shape theory in comparison to other existing standard methods is superior for precise volumetric measurement of tumor.

  19. Understanding 3D human torso shape via manifold clustering

    NASA Astrophysics Data System (ADS)

    Li, Sheng; Li, Peng; Fu, Yun

    2013-05-01

    Discovering the variations in human torso shape plays a key role in many design-oriented applications, such as suit designing. With recent advances in 3D surface imaging technologies, people can obtain 3D human torso data that provide more information than traditional measurements. However, how to find different human shapes from 3D torso data is still an open problem. In this paper, we propose to use spectral clustering approach on torso manifold to address this problem. We first represent high-dimensional torso data in a low-dimensional space using manifold learning algorithm. Then the spectral clustering method is performed to get several disjoint clusters. Experimental results show that the clusters discovered by our approach can describe the discrepancies in both genders and human shapes, and our approach achieves better performance than the compared clustering method.

  20. A 3-D shape model of Interamnia

    NASA Astrophysics Data System (ADS)

    Sato, Isao

    2015-08-01

    A 3-D shape model of the sixth largest of the main belt asteroids, (704) Interamnia, is presented. The model is reproduced from its two stellar occultation observations and six lightcurves between 1969 and 2011. The first stellar occultation was the occultation of TYC 234500183 on 1996 December 17 observed from 13 sites in the USA. An elliptical cross section of (344.6±9.6km)×(306.2±9.1km), for position angle P=73.4±12.5 was fitted. The lightcurve around the occultation shows that the peak-to-peak amplitude was 0.04 mag. and the occultation phase was just before the minimum. The second stellar occultation was the occultation of HIP 036189 on 2003 March 23 observed from 39 sites in Japan and Hawaii. An elliptical cross section of (349.8±0.9km)×(303.7±1.7km), for position angle P=86.0±1.1 was fitted. A companion of 8.5 mag. of the occulted star was discovered whose separation is 12±2 mas (milli-arcseconds), P=148±11 . A combined analysis of rotational lightcurves and occultation chords can return more information than can be obtained with either technique alone. From follow-up photometric observations of the asteroid between 2003 and 2011, its rotation period is determined to be 8.728967167±0.00000007 hours, which is accurate enough to fix the rotation phases at other occultation events. The derived north pole is λ2000=259±8, β2000=-50±5 (retrograde rotation); the lengths of the three principal axes are 2a=361.8±2.8km, 2b=324.4±5.0km, 2c=297.3±3.5km, and the mean diameter is D=326.8±3.0km. Supposing the mass of Interamnia as (3.5±0.9)×10-11 solar masses, the density is then ρ=3.8±1.0 g cm-3.

  1. Towards automated firearm identification based on high resolution 3D data: rotation-invariant features for multiple line-profile-measurement of firing pin shapes

    NASA Astrophysics Data System (ADS)

    Fischer, Robert; Vielhauer, Claus

    2015-03-01

    Understanding and evaluation of potential evidence, as well as evaluation of automated systems for forensic examinations currently play an important role within the domain of digital crime scene analysis. The application of 3D sensing and pattern recognition systems for automatic extraction and comparison of firearm related tool marks is an evolving field of research within this domain. In this context, the design and evaluation of rotation-invariant features for use on topography data play a particular important role. In this work, we propose and evaluate a 3D imaging system along with two novel features based on topography data and multiple profile-measurement-lines for automatic matching of firing pin shapes. Our test set contains 72 cartridges of three manufactures shot by six different 9mm guns. The entire pattern recognition workflow is addressed. This includes the application of confocal microscopy for data acquisition, preprocessing covers outlier handling, data normalization, as well as necessary segmentation and registration. Feature extraction involves the two introduced features for automatic comparison and matching of 3D firing pin shapes. The introduced features are called `Multiple-Circle-Path' (MCP) and `Multiple-Angle-Path' (MAP). Basically both features are compositions of freely configurable amounts of circular or straight path-lines combined with statistical evaluations. During the first part of evaluation (E1), we examine how well it is possible to differentiate between two 9mm weapons of the same mark and model. During second part (E2), we evaluate the discrimination accuracy regarding the set of six different 9mm guns. During the third part (E3), we evaluate the performance of the features in consideration of different rotation angles. In terms of E1, the best correct classification rate is 100% and in terms of E2 the best result is 86%. The preliminary results for E3 indicate robustness of both features regarding rotation. However, in future

  2. Modeling 3D facial shape from DNA.

    PubMed

    Claes, Peter; Liberton, Denise K; Daniels, Katleen; Rosana, Kerri Matthes; Quillen, Ellen E; Pearson, Laurel N; McEvoy, Brian; Bauchet, Marc; Zaidi, Arslan A; Yao, Wei; Tang, Hua; Barsh, Gregory S; Absher, Devin M; Puts, David A; Rocha, Jorge; Beleza, Sandra; Pereira, Rinaldo W; Baynam, Gareth; Suetens, Paul; Vandermeulen, Dirk; Wagner, Jennifer K; Boster, James S; Shriver, Mark D

    2014-03-01

    Human facial diversity is substantial, complex, and largely scientifically unexplained. We used spatially dense quasi-landmarks to measure face shape in population samples with mixed West African and European ancestry from three locations (United States, Brazil, and Cape Verde). Using bootstrapped response-based imputation modeling (BRIM), we uncover the relationships between facial variation and the effects of sex, genomic ancestry, and a subset of craniofacial candidate genes. The facial effects of these variables are summarized as response-based imputed predictor (RIP) variables, which are validated using self-reported sex, genomic ancestry, and observer-based facial ratings (femininity and proportional ancestry) and judgments (sex and population group). By jointly modeling sex, genomic ancestry, and genotype, the independent effects of particular alleles on facial features can be uncovered. Results on a set of 20 genes showing significant effects on facial features provide support for this approach as a novel means to identify genes affecting normal-range facial features and for approximating the appearance of a face from genetic markers.

  3. Modeling 3D Facial Shape from DNA

    PubMed Central

    Claes, Peter; Liberton, Denise K.; Daniels, Katleen; Rosana, Kerri Matthes; Quillen, Ellen E.; Pearson, Laurel N.; McEvoy, Brian; Bauchet, Marc; Zaidi, Arslan A.; Yao, Wei; Tang, Hua; Barsh, Gregory S.; Absher, Devin M.; Puts, David A.; Rocha, Jorge; Beleza, Sandra; Pereira, Rinaldo W.; Baynam, Gareth; Suetens, Paul; Vandermeulen, Dirk; Wagner, Jennifer K.; Boster, James S.; Shriver, Mark D.

    2014-01-01

    Human facial diversity is substantial, complex, and largely scientifically unexplained. We used spatially dense quasi-landmarks to measure face shape in population samples with mixed West African and European ancestry from three locations (United States, Brazil, and Cape Verde). Using bootstrapped response-based imputation modeling (BRIM), we uncover the relationships between facial variation and the effects of sex, genomic ancestry, and a subset of craniofacial candidate genes. The facial effects of these variables are summarized as response-based imputed predictor (RIP) variables, which are validated using self-reported sex, genomic ancestry, and observer-based facial ratings (femininity and proportional ancestry) and judgments (sex and population group). By jointly modeling sex, genomic ancestry, and genotype, the independent effects of particular alleles on facial features can be uncovered. Results on a set of 20 genes showing significant effects on facial features provide support for this approach as a novel means to identify genes affecting normal-range facial features and for approximating the appearance of a face from genetic markers. PMID:24651127

  4. Temperature dependences of self- and N2-broadened line-shape parameters in the ν3 and ν5 bands of 12CH3D: Measurements and calculations

    NASA Astrophysics Data System (ADS)

    Predoi-Cross, A.; Malathy Devi, V.; Sutradhar, P.; Sinyakova, T.; Buldyreva, J.; Sung, K.; Smith, M. A. H.; Mantz, A. W.

    2016-07-01

    This paper presents the results of a spectroscopic line shape study of self- and nitrogen-broadened 12CH3D transitions in the ν3 and ν5 bands in the Triad region. We combined five pure gas spectra with eighteen spectra of lean mixtures of 12CH3D and nitrogen, all recorded with a Bruker IFS-125 HR Fourier transform spectrometer. The spectra have been analyzed simultaneously using a multispectrum nonlinear least squares fitting technique. N2-broadened line parameters for 184 transitions in the ν3 band and 205 transitions in the ν5 band were measured. In addition, line positions and line intensities were measured for 168 transitions in the ν3 band and 214 transitions in the ν5 band. We have observed 10 instances of weak line mixing corresponding to K″=3 A1 or A2 transitions. Comparisons were made for the N2-broadening coefficients and associated temperature exponents with corresponding values calculated using a semi-classical Robert Bonamy type formalism that involved an inter-molecular potential with terms corresponding to short- and long-range interactions, and exact classical molecular trajectories. The theoretical N2-broadened coefficients are overestimated for high J values, but are in good agreement with the experimental values for small and middle range J values.

  5. Optical 3D shape, surface, and material analysis

    NASA Astrophysics Data System (ADS)

    Tiziani, Hans J.

    2001-06-01

    Different techniques are available for macro- and micro- topometry. The methods are basically known but their industrial implementation requires robust measuring systems, where calibration is an important necessity. Different techniques will be presented. New elements such as liquid crystal displays and micromirror devices are available leading to new applications to be discussed. Combinative methods and integration in measuring systems becomes interesting. The state of the art and new developments will be presented. Together with calibration for 3D-shock or vibration analysis an object shape measuring systems will be directly combined with a vibration measuring system.

  6. Comparison of 3D laser-based photonic scans and manual anthropometric measurements of body size and shape in a validation study of 123 young Swiss men

    PubMed Central

    Zwahlen, Marcel; Wells, Jonathan C.; Bender, Nicole; Henneberg, Maciej

    2017-01-01

    Background Manual anthropometric measurements are time-consuming and challenging to perform within acceptable intra- and inter-individual error margins in large studies. Three-dimensional (3D) laser body scanners provide a fast and precise alternative: within a few seconds the system produces a 3D image of the body topography and calculates some 150 standardised body size measurements. Objective The aim was to enhance the small number of existing validation studies and compare scan and manual techniques based on five selected measurements. We assessed the agreement between two repeated measurements within the two methods, analysed the direct agreement between the two methods, and explored the differences between the techniques when used in regressions assessing the effect of health related determinants on body shape indices. Methods We performed two repeated body scans on 123 volunteering young men using a Vitus Smart XXL body scanner. We manually measured height, waist, hip, buttock, and chest circumferences twice for each participant according to the WHO guidelines. The participants also filled in a basic questionnaire. Results Mean differences between the two scan measurements were smaller than between the two manual measurements, and precision as well as intra-class correlation coefficients were higher. Both techniques were strongly correlated. When comparing means between both techniques we found significant differences: Height was systematically shorter by 2.1 cm, whereas waist, hip and bust circumference measurements were larger in the scans by 1.17–4.37 cm. In consequence, body shape indices also became larger and the prevalence of overweight was greater when calculated from the scans. Between 4.1% and 7.3% of the probands changed risk category from normal to overweight when classified based on the scans. However, when employing regression analyses the two measurement techniques resulted in very similar coefficients, confidence intervals, and p

  7. Deep Nonlinear Metric Learning for 3-D Shape Retrieval.

    PubMed

    Xie, Jin; Dai, Guoxian; Zhu, Fan; Shao, Ling; Fang, Yi

    2016-12-28

    Effective 3-D shape retrieval is an important problem in 3-D shape analysis. Recently, feature learning-based shape retrieval methods have been widely studied, where the distance metrics between 3-D shape descriptors are usually hand-crafted. In this paper, motivated by the fact that deep neural network has the good ability to model nonlinearity, we propose to learn an effective nonlinear distance metric between 3-D shape descriptors for retrieval. First, the locality-constrained linear coding method is employed to encode each vertex on the shape and the encoding coefficient histogram is formed as the global 3-D shape descriptor to represent the shape. Then, a novel deep metric network is proposed to learn a nonlinear transformation to map the 3-D shape descriptors to a nonlinear feature space. The proposed deep metric network minimizes a discriminative loss function that can enforce the similarity between a pair of samples from the same class to be small and the similarity between a pair of samples from different classes to be large. Finally, the distance between the outputs of the metric network is used as the similarity for shape retrieval. The proposed method is evaluated on the McGill, SHREC'10 ShapeGoogle, and SHREC'14 Human shape datasets. Experimental results on the three datasets validate the effectiveness of the proposed method.

  8. Aesthetic preference recognition of 3D shapes using EEG.

    PubMed

    Chew, Lin Hou; Teo, Jason; Mountstephens, James

    2016-04-01

    Recognition and identification of aesthetic preference is indispensable in industrial design. Humans tend to pursue products with aesthetic values and make buying decisions based on their aesthetic preferences. The existence of neuromarketing is to understand consumer responses toward marketing stimuli by using imaging techniques and recognition of physiological parameters. Numerous studies have been done to understand the relationship between human, art and aesthetics. In this paper, we present a novel preference-based measurement of user aesthetics using electroencephalogram (EEG) signals for virtual 3D shapes with motion. The 3D shapes are designed to appear like bracelets, which is generated by using the Gielis superformula. EEG signals were collected by using a medical grade device, the B-Alert X10 from advance brain monitoring, with a sampling frequency of 256 Hz and resolution of 16 bits. The signals obtained when viewing 3D bracelet shapes were decomposed into alpha, beta, theta, gamma and delta rhythm by using time-frequency analysis, then classified into two classes, namely like and dislike by using support vector machines and K-nearest neighbors (KNN) classifiers respectively. Classification accuracy of up to 80 % was obtained by using KNN with the alpha, theta and delta rhythms as the features extracted from frontal channels, Fz, F3 and F4 to classify two classes, like and dislike.

  9. 3D measurement for rapid prototyping

    NASA Astrophysics Data System (ADS)

    Albrecht, Peter; Lilienblum, Tilo; Sommerkorn, Gerd; Michaelis, Bernd

    1996-08-01

    Optical 3-D measurement is an interesting approach for rapid prototyping. On one hand it's necessary to get the 3-D data of an object and on the other hand it's necessary to check the manufactured object (quality checking). Optical 3-D measurement can realize both. Classical 3-D measurement procedures based on photogrammetry cause systematic errors at strongly curved surfaces or steps in surfaces. One possibility to reduce these errors is to calculate the 3-D coordinates from several successively taken images. Thus it's possible to get higher spatial resolution and to reduce the systematic errors at 'problem surfaces.' Another possibility is to process the measurement values by neural networks. A modified associative memory smoothes and corrects the calculated 3-D coordinates using a-priori knowledge about the measurement object.

  10. Discerning nonrigid 3D shapes from motion cues

    PubMed Central

    Jain, Anshul; Zaidi, Qasim

    2011-01-01

    Many organisms and objects deform nonrigidly when moving, requiring perceivers to separate shape changes from object motions. Surprisingly, the abilities of observers to correctly infer nonrigid volumetric shapes from motion cues have not been measured, and structure from motion models predominantly use variants of rigidity assumptions. We show that observers are equally sensitive at discriminating cross-sections of flexing and rigid cylinders based on motion cues, when the cylinders are rotated simultaneously around the vertical and depth axes. A computational model based on motion perspective (i.e., assuming perceived depth is inversely proportional to local velocity) predicted the psychometric curves better than shape from motion factorization models using shape or trajectory basis functions. Asymmetric percepts of symmetric cylinders, arising because of asymmetric velocity profiles, provided additional evidence for the dominant role of relative velocity in shape perception. Finally, we show that inexperienced observers are generally incapable of using motion cues to detect inflation/deflation of rigid and flexing cylinders, but this handicap can be overcome with practice for both nonrigid and rigid shapes. The empirical and computational results of this study argue against the use of rigidity assumptions in extracting 3D shape from motion and for the primacy of motion deformations computed from motion shears. PMID:21205884

  11. 3D-DXA: Assessing the Femoral Shape, the Trabecular Macrostructure and the Cortex in 3D from DXA images.

    PubMed

    Humbert, Ludovic; Martelli, Yves; Fonolla, Roger; Steghofer, Martin; Di Gregorio, Silvana; Malouf, Jorge; Romera, Jordi; Barquero, Luis Miguel Del Rio

    2017-01-01

    The 3D distribution of the cortical and trabecular bone mass in the proximal femur is a critical component in determining fracture resistance that is not taken into account in clinical routine Dual-energy X-ray Absorptiometry (DXA) examination. In this paper, a statistical shape and appearance model together with a 3D-2D registration approach are used to model the femoral shape and bone density distribution in 3D from an anteroposterior DXA projection. A model-based algorithm is subsequently used to segment the cortex and build a 3D map of the cortical thickness and density. Measurements characterising the geometry and density distribution were computed for various regions of interest in both cortical and trabecular compartments. Models and measurements provided by the "3D-DXA" software algorithm were evaluated using a database of 157 study subjects, by comparing 3D-DXA analyses (using DXA scanners from three manufacturers) with measurements performed by Quantitative Computed Tomography (QCT). The mean point-to-surface distance between 3D-DXA and QCT femoral shapes was 0.93 mm. The mean absolute error between cortical thickness and density estimates measured by 3D-DXA and QCT was 0.33 mm and 72 mg/cm(3). Correlation coefficients (R) between the 3D-DXA and QCT measurements were 0.86, 0.93, and 0.95 for the volumetric bone mineral density at the trabecular, cortical, and integral compartments respectively, and 0.91 for the mean cortical thickness. 3D-DXA provides a detailed analysis of the proximal femur, including a separate assessment of the cortical layer and trabecular macrostructure, which could potentially improve osteoporosis management while maintaining DXA as the standard routine modality.

  12. Perception-based shape retrieval for 3D building models

    NASA Astrophysics Data System (ADS)

    Zhang, Man; Zhang, Liqiang; Takis Mathiopoulos, P.; Ding, Yusi; Wang, Hao

    2013-01-01

    With the help of 3D search engines, a large number of 3D building models can be retrieved freely online. A serious disadvantage of most rotation-insensitive shape descriptors is their inability to distinguish between two 3D building models which are different at their main axes, but appear similar when one of them is rotated. To resolve this problem, we present a novel upright-based normalization method which not only correctly rotates such building models, but also greatly simplifies and accelerates the abstraction and the matching of building models' shape descriptors. Moreover, the abundance of architectural styles significantly hinders the effective shape retrieval of building models. Our research has shown that buildings with different designs are not well distinguished by the widely recognized shape descriptors for general 3D models. Motivated by this observation and to further improve the shape retrieval quality, a new building matching method is introduced and analyzed based on concepts found in the field of perception theory and the well-known Light Field descriptor. The resulting normalized building models are first classified using the qualitative shape descriptors of Shell and Unevenness which outline integral geometrical and topological information. These models are then put in on orderly fashion with the help of an improved quantitative shape descriptor which we will term as Horizontal Light Field Descriptor, since it assembles detailed shape characteristics. To accurately evaluate the proposed methodology, an enlarged building shape database which extends previous well-known shape benchmarks was implemented as well as a model retrieval system supporting inputs from 2D sketches and 3D models. Various experimental performance evaluation results have shown that, as compared to previous methods, retrievals employing the proposed matching methodology are faster and more consistent with human recognition of spatial objects. In addition these performance

  13. Optofluidic fabrication for 3D-shaped particles

    PubMed Central

    Paulsen, Kevin S.; Di Carlo, Dino; Chung, Aram J.

    2015-01-01

    Complex three-dimensional (3D)-shaped particles could play unique roles in biotechnology, structural mechanics and self-assembly. Current methods of fabricating 3D-shaped particles such as 3D printing, injection moulding or photolithography are limited because of low-resolution, low-throughput or complicated/expensive procedures. Here, we present a novel method called optofluidic fabrication for the generation of complex 3D-shaped polymer particles based on two coupled processes: inertial flow shaping and ultraviolet (UV) light polymerization. Pillars within fluidic platforms are used to deterministically deform photosensitive precursor fluid streams. The channels are then illuminated with patterned UV light to polymerize the photosensitive fluid, creating particles with multi-scale 3D geometries. The fundamental advantages of optofluidic fabrication include high-resolution, multi-scalability, dynamic tunability, simple operation and great potential for bulk fabrication with full automation. Through different combinations of pillar configurations, flow rates and UV light patterns, an infinite set of 3D-shaped particles is available, and a variety are demonstrated. PMID:25904062

  14. The effects of 3-D shaping on ITG stability

    NASA Astrophysics Data System (ADS)

    Rorvig, Mordechai; Hegna, Chris

    2012-03-01

    In this work we seek to understand how 3-D shaping can be used to improve ion temperature gradient stability. Part of the difficulty in deducing the role of 3-D shaping is the generation of 3-D MHD equilibria necessary for the calculations. In this work, MHD equilibrium surfaces are generated using local 3-D magnetostatic equilibrium theory [1]. We distinguish three different types of toroidal magnetic surface shaping: axisymmetric shaping, toroidal rotation of the cross section, and toroidal translation of the magnetic axis. We study these types of shaping independently and in combination to look for improvements. Linear growth rates for ITG modes are calculated using the gyrokinetics code GENE [2]. The geometric interface package GIST [3] accepts the equilibrium input data from the local equilibrium calculation. Growth rates for both axisymmetric and 3-D equilibrium calculations are presented. [4pt] [1] C. C. Hegna, Physics of Plasmas 7, 3921 (2000).[0pt] [2] F. Jenko, W. Dorland, M. Kotschenreuther, and B. N. Rogers, Physical Review Letters 7, 1904 (2000).[0pt] [3] P. Xanthopoulos, W. A. Cooper, F. Jenko, Yu. Turkin, A. Runov, and J. Geiger, Physics of Plasmas 16, 082303 (2009).

  15. Conveying the 3D Shape of Transparent Surfaces Via Texture

    NASA Technical Reports Server (NTRS)

    Interrante, Victoria; Fuchs, Henry; Pizer, Stephen

    1997-01-01

    Transparency can be a useful device for depicting multiple overlapping surfaces in a single image. The challenge is to render the transparent surfaces in such a way that their three-dimensional shape can be readily understood and their depth distance from underlying structures clearly perceived. This paper describes our investigations into the use of sparsely-distributed discrete, opaque texture as an 'artistic device' for more explicitly indicating the relative depth of a transparent surface and for communicating the essential features of its 3D shape in an intuitively meaningful and minimally occluding way. The driving application for this work is the visualization of layered surfaces in radiation therapy treatment planning data, and the technique is illustrated on transparent isointensity surfaces of radiation dose. We describe the perceptual motivation and artistic inspiration for defining a stroke texture that is locally oriented in the direction of greatest normal curvature (and in which individual strokes are of a length proportional to the magnitude of the curvature in the direction they indicate), and discuss several alternative methods for applying this texture to isointensity surfaces defined in a volume. We propose an experimental paradigm for objectively measuring observers' ability to judge the shape and depth of a layered transparent surface, in the course of a task relevant to the needs of radiotherapy treatment planning, and use this paradigm to evaluate the practical effectiveness of our approach through a controlled observer experiment based on images generated from actual clinical data.

  16. 3D optical measuring technologies and systems

    NASA Astrophysics Data System (ADS)

    Chugui, Yuri V.

    2005-02-01

    The results of the R & D activity of TDI SIE SB RAS in the field of the 3D optical measuring technologies and systems for noncontact 3D optical dimensional inspection applied to atomic and railway industry safety problems are presented. This activity includes investigations of diffraction phenomena on some 3D objects, using the original constructive calculation method. The efficient algorithms for precise determining the transverse and longitudinal sizes of 3D objects of constant thickness by diffraction method, peculiarities on formation of the shadow and images of the typical elements of the extended objects were suggested. Ensuring the safety of nuclear reactors and running trains as well as their high exploitation reliability requires a 100% noncontact precise inspection of geometrical parameters of their components. To solve this problem we have developed methods and produced the technical vision measuring systems LMM, CONTROL, PROFIL, and technologies for noncontact 3D dimensional inspection of grid spacers and fuel elements for the nuclear reactor VVER-1000 and VVER-440, as well as automatic laser diagnostic COMPLEX for noncontact inspection of geometric parameters of running freight car wheel pairs. The performances of these systems and the results of industrial testing are presented and discussed. The created devices are in pilot operation at Atomic and Railway Companies.

  17. Programming self assembly by designing the 3D shape of floating objects

    NASA Astrophysics Data System (ADS)

    Poty, Martin; Lagubeau, Guillaume; Lumay, Geoffroy; Vandewalle, Nicolas

    2014-11-01

    Self-assembly of floating particles driven by capillary forces at some liquid-air interface leads to the formation of two-dimensionnal structures. Using a 3d printer, milimeter scale objets are produced. Their 3d shape is chosen in order to create capillary multipoles. The capillary interactions between these components can be either attractive or repulsive depending on the interface local deformations along the liquid-air interface. In order to understand how the shape of an object deforms the interface, we developed an original profilometry method. The measurements show that specific structures can be programmed by selecting the 3d branched shapes.

  18. Divided attention limits perception of 3-D object shapes.

    PubMed

    Scharff, Alec; Palmer, John; Moore, Cathleen M

    2013-02-12

    Can one perceive multiple object shapes at once? We tested two benchmark models of object shape perception under divided attention: an unlimited-capacity and a fixed-capacity model. Under unlimited-capacity models, shapes are analyzed independently and in parallel. Under fixed-capacity models, shapes are processed at a fixed rate (as in a serial model). To distinguish these models, we compared conditions in which observers were presented with simultaneous or sequential presentations of a fixed number of objects (The extended simultaneous-sequential method: Scharff, Palmer, & Moore, 2011a, 2011b). We used novel physical objects as stimuli, minimizing the role of semantic categorization in the task. Observers searched for a specific object among similar objects. We ensured that non-shape stimulus properties such as color and texture could not be used to complete the task. Unpredictable viewing angles were used to preclude image-matching strategies. The results rejected unlimited-capacity models for object shape perception and were consistent with the predictions of a fixed-capacity model. In contrast, a task that required observers to recognize 2-D shapes with predictable viewing angles yielded an unlimited capacity result. Further experiments ruled out alternative explanations for the capacity limit, leading us to conclude that there is a fixed-capacity limit on the ability to perceive 3-D object shapes.

  19. A 3D acquisition system combination of structured-light scanning and shape from silhouette

    NASA Astrophysics Data System (ADS)

    Sun, Changku; Tao, Li; Wang, Peng; He, Li

    2006-05-01

    A robust and accurate three dimensional (3D) acquisition system is presented, which is a combination of structured-light scanning and shape from silhouette. Using common world coordinate system, two groups of point data can be integrated into the final complete 3D model without any integration and registration algorithm. The mathematics model of structured-light scanning is described in detail, and the shape from silhouette algorithm is introduced as well. The complete 3D model of a cup with a handle is obtained successfully by the proposed technique. At last the measurement on a ball bearing is performed, with the measurement precision better than 0.15 mm.

  20. Parameterization of 3D brain structures for statistical shape analysis

    NASA Astrophysics Data System (ADS)

    Zhu, Litao; Jiang, Tianzi

    2004-05-01

    Statistical Shape Analysis (SSA) is a powerful tool for noninvasive studies of pathophysiology and diagnosis of brain diseases. It also provides a shape constraint for the segmentation of brain structures. There are two key problems in SSA: the representation of shapes and their alignments. The widely used parameterized representations are obtained by preserving angles or areas and the alignments of shapes are achieved by rotating parameter net. However, representations preserving angles or areas do not really guarantee the anatomical correspondence of brain structures. In this paper, we incorporate shape-based landmarks into parameterization of banana-like 3D brain structures to address this problem. Firstly, we get the triangulated surface of the object and extract two landmarks from the mesh, i.e. the ends of the banana-like object. Then the surface is parameterized by creating a continuous and bijective mapping from the surface to a spherical surface based on a heat conduction model. The correspondence of shapes is achieved by mapping the two landmarks to the north and south poles of the sphere and using an extracted origin orientation to select the dateline during parameterization. We apply our approach to the parameterization of lateral ventricle and a multi-resolution shape representation is obtained by using the Discrete Fourier Transform.

  1. A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci.

    PubMed

    Eck, Simon; Wörz, Stefan; Müller-Ott, Katharina; Hahn, Matthias; Biesdorf, Andreas; Schotta, Gunnar; Rippe, Karsten; Rohr, Karl

    2016-08-01

    The genome is partitioned into regions of euchromatin and heterochromatin. The organization of heterochromatin is important for the regulation of cellular processes such as chromosome segregation and gene silencing, and their misregulation is linked to cancer and other diseases. We present a model-based approach for automatic 3D segmentation and 3D shape analysis of heterochromatin foci from 3D confocal light microscopy images. Our approach employs a novel 3D intensity model based on spherical harmonics, which analytically describes the shape and intensities of the foci. The model parameters are determined by fitting the model to the image intensities using least-squares minimization. To characterize the 3D shape of the foci, we exploit the computed spherical harmonics coefficients and determine a shape descriptor. We applied our approach to 3D synthetic image data as well as real 3D static and real 3D time-lapse microscopy images, and compared the performance with that of previous approaches. It turned out that our approach yields accurate 3D segmentation results and performs better than previous approaches. We also show that our approach can be used for quantifying 3D shape differences of heterochromatin foci.

  2. Progressive Shape-Distribution-Encoder for Learning 3D Shape Representation.

    PubMed

    Xie, Jin; Zhu, Fan; Dai, Guoxian; Shao, Ling; Fang, Yi

    2017-03-01

    Since there are complex geometric variations with 3D shapes, extracting efficient 3D shape features is one of the most challenging tasks in shape matching and retrieval. In this paper, we propose a deep shape descriptor by learning shape distributions at different diffusion time via a progressive shape-distribution-encoder (PSDE). First, we develop a shape distribution representation with the kernel density estimator to characterize the intrinsic geometry structures of 3D shapes. Then, we propose to learn a deep shape feature through an unsupervised PSDE. Specially, the unsupervised PSDE aims at modeling the complex non-linear transform of the estimated shape distributions between consecutive diffusion time. In order to characterize the intrinsic structures of 3D shapes more efficiently, we stack multiple PSDEs to form a network structure. Finally, we concatenate all neurons in the middle hidden layers of the unsupervised PSDE network to form an unsupervised shape descriptor for retrieval. Furthermore, by imposing an additional constraint on the outputs of all hidden layers, we propose a supervised PSDE to form a supervised shape descriptor. For each hidden layer, the similarity between a pair of outputs from the same class is as large as possible and the similarity between a pair of outputs from different classes is as small as possible. The proposed method is evaluated on three benchmark 3D shape data sets with large geometric variations, i.e., McGill, SHREC'10 ShapeGoogle, and SHREC'14 Human data sets, and the experimental results demonstrate the superiority of the proposed method to the existing approaches.

  3. Automated robust generation of compact 3D statistical shape models

    NASA Astrophysics Data System (ADS)

    Vrtovec, Tomaz; Likar, Bostjan; Tomazevic, Dejan; Pernus, Franjo

    2004-05-01

    Ascertaining the detailed shape and spatial arrangement of anatomical structures is important not only within diagnostic settings but also in the areas of planning, simulation, intraoperative navigation, and tracking of pathology. Robust, accurate and efficient automated segmentation of anatomical structures is difficult because of their complexity and inter-patient variability. Furthermore, the position of the patient during image acquisition, the imaging device and protocol, image resolution, and other factors induce additional variations in shape and appearance. Statistical shape models (SSMs) have proven quite successful in capturing structural variability. A possible approach to obtain a 3D SSM is to extract reference voxels by precisely segmenting the structure in one, reference image. The corresponding voxels in other images are determined by registering the reference image to each other image. The SSM obtained in this way describes statistically plausible shape variations over the given population as well as variations due to imperfect registration. In this paper, we present a completely automated method that significantly reduces shape variations induced by imperfect registration, thus allowing a more accurate description of variations. At each iteration, the derived SSM is used for coarse registration, which is further improved by describing finer variations of the structure. The method was tested on 64 lumbar spinal column CT scans, from which 23, 38, 45, 46 and 42 volumes of interest containing vertebra L1, L2, L3, L4 and L5, respectively, were extracted. Separate SSMs were generated for each vertebra. The results show that the method is capable of reducing the variations induced by registration errors.

  4. A 3D isodose manipulation tool for interactive dose shaping

    NASA Astrophysics Data System (ADS)

    Kamerling, C. P.; Ziegenhein, P.; Heinrich, H.; Oelfke, U.

    2014-03-01

    The interactive dose shaping (IDS) planning paradigm aims to perform interactive local dose adaptations of an IMRT plan without compromising already established valuable dose features in real-time. In this work we introduce an interactive 3D isodose manipulation tool which enables local modifications of a dose distribution intuitively by direct manipulation of an isodose surface. We developed an in-house IMRT TPS framework employing an IDS engine as well as a 3D GUI for dose manipulation and visualization. In our software an initial dose distribution can be interactively modified through an isodose surface manipulation tool by intuitively clicking on an isodose surface. To guide the user interaction, the position of the modification is indicated by a sphere while the mouse cursor hovers the isodose surface. The sphere's radius controls the locality of the modification. The tool induces a dose modification as a direct change of dose in one or more voxels, which is incrementally obtained by fluence adjustments. A subsequent recovery step identifies voxels with violated dose features and aims to recover their original dose. We showed a proof of concept study for the proposed tool by adapting the dose distribution of a prostate case (9 beams, coplanar). Single dose modifications take less than 2 seconds on an actual desktop PC.

  5. Saddle-Shaped Cyclic Indole Tetramers: 3D Electroactive Molecules.

    PubMed

    Ruiz, Constanza; Monge, Ángeles; Gutiérrez-Puebla, Enrique; Alkorta, Ibon; Elguero, José; Navarrete, Juan T López; Ruiz Delgado, M Carmen; Gómez-Lor, Berta

    2016-07-18

    We present a joint theoretical and experimental study of a series of cyclic indole tetramers aimed at understanding the fundamental electronic properties of this 3D platform and evaluating its potential in the construction of new semiconductors. To this end, we combined absorption and Raman spectroscopy, cyclic voltammetry, and spectroelectrochemistry with DFT calculations. Our results suggest that this platform can be easily and reversibly oxidized. Additionally, it has a HOMO that matches very well with the workfunction of gold, therefore charge injection from a gold electrode is expected to occur without significant barriers. Interestingly, the cyclic tetraindoles allow for good electron delocalization in spite of their saddle-shaped structures. The steric constraints introduced by N-substitution significantly inhibits ring inversion of the central cyclooctatetraene unit, whereas it only barely affects the optical and electrochemical properties (a slightly higher oxidation potential and a blueshifted absorption upon alkylation are observed).

  6. 3D shape shearography with integrated structured light projection for strain inspection of curved objects

    NASA Astrophysics Data System (ADS)

    Anisimov, Andrei G.; Groves, Roger M.

    2015-05-01

    Shearography (speckle pattern shearing interferometry) is a non-destructive testing technique that provides full-field surface strain characterization. Although real-life objects especially in aerospace, transport or cultural heritage are not flat (e.g. aircraft leading edges or sculptures), their inspection with shearography is of interest for both hidden defect detection and material characterization. Accurate strain measuring of a highly curved or free form surface needs to be performed by combining inline object shape measuring and processing of shearography data in 3D. Previous research has not provided a general solution. This research is devoted to the practical questions of 3D shape shearography system development for surface strain characterization of curved objects. The complete procedure of calibration and data processing of a 3D shape shearography system with integrated structured light projector is presented. This includes an estimation of the actual shear distance and a sensitivity matrix correction within the system field of view. For the experimental part a 3D shape shearography system prototype was developed. It employs three spatially-distributed shearing cameras, with Michelson interferometers acting as the shearing devices, one illumination laser source and a structured light projector. The developed system performance was evaluated with a previously reported cylinder specimen (length 400 mm, external diameter 190 mmm) loaded by internal pressure. Further steps for the 3D shape shearography prototype and the technique development are also proposed.

  7. A flexible fast 3D profilometry based on modulation measurement

    NASA Astrophysics Data System (ADS)

    Dou, Yunfu; Su, Xianyu; Chen, Yanfei; Wang, Ying

    2011-03-01

    This paper proposes a flexible fast profilometry based on modulation measurement. Two orthogonal gratings through a beam splitter are vertically projected on an object surface, and the measured object is placed between the imaging planes of the two gratings. Then the image of the object surface modulated by the orthogonal gratings can be obtained by a CCD camera in the same direction as the grating projection. This image is processed by the operations consisting of performing the Fourier transform, spatial frequency filtering and inverse Fourier transform. Using the modulation distributions of two grating patterns, we can reconstruct the 3D shape of the object. In the measurement process, we only need to capture one fringe pattern, so it is faster than the MMP and remains the advantages of it. In the article, the principle of this method, the setup of the measurement system, some simulations and primary experiment results are given. The simulative and experimental result proves it can restore the 3D shape of the complex object fast and comparatively accurate. Because only one fringe pattern is needed in the testing, our method has a promising extensive application prospect in real-time acquiring and dynamic measurement of 3D data of complex objects.

  8. Recovering 3D human body configurations using shape contexts.

    PubMed

    Mori, Greg; Malik, Jitendra

    2006-07-01

    The problem we consider in this paper is to take a single two-dimensional image containing a human figure, locate the joint positions, and use these to estimate the body configuration and pose in three-dimensional space. The basic approach is to store a number of exemplar 2D views of the human body in a variety of different configurations and viewpoints with respect to the camera. On each of these stored views, the locations of the body joints (left elbow, right knee, etc.) are manually marked and labeled for future use. The input image is then matched to each stored view, using the technique of shape context matching in conjunction with a kinematic chain-based deformation model. Assuming that there is a stored view sufficiently similar in configuration and pose, the correspondence process will succeed. The locations of the body joints are then transferred from the exemplar view to the test shape. Given the 2D joint locations, the 3D body configuration and pose are then estimated using an existing algorithm. We can apply this technique to video by treating each frame independently--tracking just becomes repeated recognition. We present results on a variety of data sets.

  9. Polygonal Shapes Detection in 3d Models of Complex Architectures

    NASA Astrophysics Data System (ADS)

    Benciolini, G. B.; Vitti, A.

    2015-02-01

    A sequential application of two global models defined on a variational framework is proposed for the detection of polygonal shapes in 3D models of complex architectures. As a first step, the procedure involves the use of the Mumford and Shah (1989) 1st-order variational model in dimension two (gridded height data are processed). In the Mumford-Shah model an auxiliary function detects the sharp changes, i.e., the discontinuities, of a piecewise smooth approximation of the data. The Mumford-Shah model requires the global minimization of a specific functional to simultaneously produce both the smooth approximation and its discontinuities. In the proposed procedure, the edges of the smooth approximation derived by a specific processing of the auxiliary function are then processed using the Blake and Zisserman (1987) 2nd-order variational model in dimension one (edges are processed in the plane). This second step permits to describe the edges of an object by means of piecewise almost-linear approximation of the input edges themselves and to detects sharp changes of the first-derivative of the edges so to detect corners. The Mumford-Shah variational model is used in two dimensions accepting the original data as primary input. The Blake-Zisserman variational model is used in one dimension for the refinement of the description of the edges. The selection among all the boundaries detected by the Mumford-Shah model of those that present a shape close to a polygon is performed by considering only those boundaries for which the Blake-Zisserman model identified discontinuities in their first derivative. The output of the procedure are hence shapes, coming from 3D geometric data, that can be considered as polygons. The application of the procedure is suitable for, but not limited to, the detection of objects such as foot-print of polygonal buildings, building facade boundaries or windows contours. v The procedure is applied to a height model of the building of the Engineering

  10. Measurements of Polarization Transfers in Real Compton Scattering by a proton target at JLAB. A new source of information on the 3D shape of the nucleon

    SciTech Connect

    Fanelli, Cristiano V.

    2015-03-01

    In this thesis work, results of the analysis of the polarization transfers measured in real Compton scattering (RCS) by the Collaboration E07-002 at the Je fferson Lab Hall-C are presented. The data were collected at large scattering angle (theta_cm = 70deg) and with a polarized incident photon beam at an average energy of 3.8 GeV. Such a kind of experiments allows one to understand more deeply the reaction mechanism, that involves a real photon, by extracting both Compton form factors and Generalized Parton Distributions (GPDs) (also relevant for possibly shedding light on the total angular momentum of the nucleon). The obtained results for the longitudinal and transverse polarization transfers K_LL and K_LT, are of crucial importance, since they confirm unambiguously the disagreement between experimental data and pQCD prediction, as it was found in E99-114 experiment, and favor the Handbag mechanism. The E99-114 and E07-002 results can contribute to attract new interest on the great yield of the Compton scattering by a nucleon target, as demonstrated by the recent approval of an experimental proposal submitted to the Jefferson Lab PAC 42 for a Wide-angle Compton Scattering experiment, at 8 and 10 GeV Photon Energies. The new experiments approved to run with the updated 12 GeV electron beam at JLab, are characterized by much higher luminosities, and a new GEM tracker is under development to tackle the challenging backgrounds. Within this context, we present a new multistep tracking algorithm, based on (i) a Neural Network (NN) designed for a fast and efficient association of the hits measured by the GEM detector which allows the track identification, and (ii) the application of both a Kalman filter and Rauch-Tung-Striebel smoother to further improve the track reconstruction. The full procedure, i.e. NN and filtering, appears very promising, with high performances in terms of both association effciency and reconstruction accuracy, and these preliminary results will

  11. Quantitative model for the generic 3D shape of ICMEs at 1 AU

    NASA Astrophysics Data System (ADS)

    Démoulin, P.; Janvier, M.; Masías-Meza, J. J.; Dasso, S.

    2016-10-01

    Context. Interplanetary imagers provide 2D projected views of the densest plasma parts of interplanetary coronal mass ejections (ICMEs), while in situ measurements provide magnetic field and plasma parameter measurements along the spacecraft trajectory, that is, along a 1D cut. The data therefore only give a partial view of the 3D structures of ICMEs. Aims: By studying a large number of ICMEs, crossed at different distances from their apex, we develop statistical methods to obtain a quantitative generic 3D shape of ICMEs. Methods: In a first approach we theoretically obtained the expected statistical distribution of the shock-normal orientation from assuming simple models of 3D shock shapes, including distorted profiles, and compared their compatibility with observed distributions. In a second approach we used the shock normal and the flux rope axis orientations together with the impact parameter to provide statistical information across the spacecraft trajectory. Results: The study of different 3D shock models shows that the observations are compatible with a shock that is symmetric around the Sun-apex line as well as with an asymmetry up to an aspect ratio of around 3. Moreover, flat or dipped shock surfaces near their apex can only be rare cases. Next, the sheath thickness and the ICME velocity have no global trend along the ICME front. Finally, regrouping all these new results and those of our previous articles, we provide a quantitative ICME generic 3D shape, including the global shape of the shock, the sheath, and the flux rope. Conclusions: The obtained quantitative generic ICME shape will have implications for several aims. For example, it constrains the output of typical ICME numerical simulations. It is also a base for studying the transport of high-energy solar and cosmic particles during an ICME propagation as well as for modeling and forecasting space weather conditions near Earth.

  12. Manifold Learning for 3D Shape Description and Classification

    DTIC Science & Technology

    2014-06-09

    combat. Recently finished US Army Anthropometric Survey (ANSUR II) has collected 3D body scan data of soldiers at the Natick Solider Center (NSC), as...sizing of virtually every piece of clothing and equipment that Soldiers wear and use in combat. Recently finished US Army Anthropometric Survey (ANSUR... Anthropometric Survey (ANSUR II) has collected 3D body scan data of soldiers at the Natick Solider Center (NSC), as shown in Figure 1. By applying new

  13. Faceless identification: a model for person identification using the 3D shape and 3D motion as cues

    NASA Astrophysics Data System (ADS)

    Klasen, Lena M.; Li, Haibo

    1999-02-01

    Person identification by using biometric methods based on image sequences, or still images, often requires a controllable and cooperative environment during the image capturing stage. In the forensic case the situation is more likely to be the opposite. In this work we propose a method that makes use of the anthropometry of the human body and human actions as cues for identification. Image sequences from surveillance systems are used, which can be seen as monocular image sequences. A 3D deformable wireframe body model is used as a platform to handle the non-rigid information of the 3D shape and 3D motion of the human body from the image sequence. A recursive method for estimating global motion and local shape variations is presented, using two recursive feedback systems.

  14. Measurement of Contrast Ratios for 3D Display

    DTIC Science & Technology

    2000-07-01

    stereoscopic, autostereoscopic , 3D , display ABSTRACT 3D image display devices have wide applications in medical and entertainment areas. Binocular (stereoscopic...and system crosstalk. In many 3D display systems viewer’ crosstalk is an important issue for good performance, especial in autostereoscopic display...UNCLASSIFIED Defense Technical Information Center Compilation Part Notice ADPO 11343 TITLE: Measurement of Contrast Ratios for 3D Display

  15. The terminal velocity of volcanic particles with shape obtained from 3D X-ray microtomography

    NASA Astrophysics Data System (ADS)

    Dioguardi, Fabio; Mele, Daniela; Dellino, Pierfrancesco; Dürig, Tobias

    2017-01-01

    New experiments of falling volcanic particles were performed in order to define terminal velocity models applicable in a wide range of Reynolds number Re. Experiments were carried out with fluids of various viscosities and with particles that cover a wide range of size, density and shape. Particle shape, which strongly influences fluid drag, was measured in 3D by High-resolution X-ray microtomography, by which sphericity Φ3D and fractal dimension D3D were obtained. They are easier to measure and less operator dependent than the 2D shape parameters used in previous papers. Drag laws that make use of the new 3D parameters were obtained by fitting particle data to the experiments, and single-equation terminal velocity models were derived. They work well both at high and low Re (3 × 10- 2 < Re < 104), while earlier formulations made use of different equations at different ranges of Re. The new drag laws are well suited for the modelling of particle transportation both in the eruptive column, where coarse and fine particles are present, and also in the distal part of the umbrella region, where fine ash is involved in the large-scale domains of atmospheric circulation. A table of the typical values of Φ3D and D3D of particles from known plinian, subplinian and ash plume eruptions is presented. Graphs of terminal velocity as a function of grain size are finally proposed as tools to help volcanologists and atmosphere scientists to model particle transportation of explosive eruptions.

  16. Multi-shape active composites by 3D printing of digital shape memory polymers

    NASA Astrophysics Data System (ADS)

    Wu, Jiangtao; Yuan, Chao; Ding, Zhen; Isakov, Michael; Mao, Yiqi; Wang, Tiejun; Dunn, Martin L.; Qi, H. Jerry

    2016-04-01

    Recent research using 3D printing to create active structures has added an exciting new dimension to 3D printing technology. After being printed, these active, often composite, materials can change their shape over time; this has been termed as 4D printing. In this paper, we demonstrate the design and manufacture of active composites that can take multiple shapes, depending on the environmental temperature. This is achieved by 3D printing layered composite structures with multiple families of shape memory polymer (SMP) fibers – digital SMPs - with different glass transition temperatures (Tg) to control the transformation of the structure. After a simple single-step thermomechanical programming process, the fiber families can be sequentially activated to bend when the temperature is increased. By tuning the volume fraction of the fibers, bending deformation can be controlled. We develop a theoretical model to predict the deformation behavior for better understanding the phenomena and aiding the design. We also design and print several flat 2D structures that can be programmed to fold and open themselves when subjected to heat. With the advantages of an easy fabrication process and the controllable multi-shape memory effect, the printed SMP composites have a great potential in 4D printing applications.

  17. Multi-shape active composites by 3D printing of digital shape memory polymers.

    PubMed

    Wu, Jiangtao; Yuan, Chao; Ding, Zhen; Isakov, Michael; Mao, Yiqi; Wang, Tiejun; Dunn, Martin L; Qi, H Jerry

    2016-04-13

    Recent research using 3D printing to create active structures has added an exciting new dimension to 3D printing technology. After being printed, these active, often composite, materials can change their shape over time; this has been termed as 4D printing. In this paper, we demonstrate the design and manufacture of active composites that can take multiple shapes, depending on the environmental temperature. This is achieved by 3D printing layered composite structures with multiple families of shape memory polymer (SMP) fibers - digital SMPs - with different glass transition temperatures (Tg) to control the transformation of the structure. After a simple single-step thermomechanical programming process, the fiber families can be sequentially activated to bend when the temperature is increased. By tuning the volume fraction of the fibers, bending deformation can be controlled. We develop a theoretical model to predict the deformation behavior for better understanding the phenomena and aiding the design. We also design and print several flat 2D structures that can be programmed to fold and open themselves when subjected to heat. With the advantages of an easy fabrication process and the controllable multi-shape memory effect, the printed SMP composites have a great potential in 4D printing applications.

  18. Multi-shape active composites by 3D printing of digital shape memory polymers

    PubMed Central

    Wu, Jiangtao; Yuan, Chao; Ding, Zhen; Isakov, Michael; Mao, Yiqi; Wang, Tiejun; Dunn, Martin L.; Qi, H. Jerry

    2016-01-01

    Recent research using 3D printing to create active structures has added an exciting new dimension to 3D printing technology. After being printed, these active, often composite, materials can change their shape over time; this has been termed as 4D printing. In this paper, we demonstrate the design and manufacture of active composites that can take multiple shapes, depending on the environmental temperature. This is achieved by 3D printing layered composite structures with multiple families of shape memory polymer (SMP) fibers – digital SMPs - with different glass transition temperatures (Tg) to control the transformation of the structure. After a simple single-step thermomechanical programming process, the fiber families can be sequentially activated to bend when the temperature is increased. By tuning the volume fraction of the fibers, bending deformation can be controlled. We develop a theoretical model to predict the deformation behavior for better understanding the phenomena and aiding the design. We also design and print several flat 2D structures that can be programmed to fold and open themselves when subjected to heat. With the advantages of an easy fabrication process and the controllable multi-shape memory effect, the printed SMP composites have a great potential in 4D printing applications. PMID:27071543

  19. Shape: A 3D Modeling Tool for Astrophysics.

    PubMed

    Steffen, Wolfgang; Koning, Nicholas; Wenger, Stephan; Morisset, Christophe; Magnor, Marcus

    2011-04-01

    We present a flexible interactive 3D morpho-kinematical modeling application for astrophysics. Compared to other systems, our application reduces the restrictions on the physical assumptions, data type, and amount that is required for a reconstruction of an object's morphology. It is one of the first publicly available tools to apply interactive graphics to astrophysical modeling. The tool allows astrophysicists to provide a priori knowledge about the object by interactively defining 3D structural elements. By direct comparison of model prediction with observational data, model parameters can then be automatically optimized to fit the observation. The tool has already been successfully used in a number of astrophysical research projects.

  20. 3D statistical shape models incorporating 3D random forest regression voting for robust CT liver segmentation

    NASA Astrophysics Data System (ADS)

    Norajitra, Tobias; Meinzer, Hans-Peter; Maier-Hein, Klaus H.

    2015-03-01

    During image segmentation, 3D Statistical Shape Models (SSM) usually conduct a limited search for target landmarks within one-dimensional search profiles perpendicular to the model surface. In addition, landmark appearance is modeled only locally based on linear profiles and weak learners, altogether leading to segmentation errors from landmark ambiguities and limited search coverage. We present a new method for 3D SSM segmentation based on 3D Random Forest Regression Voting. For each surface landmark, a Random Regression Forest is trained that learns a 3D spatial displacement function between the according reference landmark and a set of surrounding sample points, based on an infinite set of non-local randomized 3D Haar-like features. Landmark search is then conducted omni-directionally within 3D search spaces, where voxelwise forest predictions on landmark position contribute to a common voting map which reflects the overall position estimate. Segmentation experiments were conducted on a set of 45 CT volumes of the human liver, of which 40 images were randomly chosen for training and 5 for testing. Without parameter optimization, using a simple candidate selection and a single resolution approach, excellent results were achieved, while faster convergence and better concavity segmentation were observed, altogether underlining the potential of our approach in terms of increased robustness from distinct landmark detection and from better search coverage.

  1. 3D Printing: 3D Printing of Shape Memory Polymers for Flexible Electronic Devices (Adv. Mater. 22/2016).

    PubMed

    Zarek, Matt; Layani, Michael; Cooperstein, Ido; Sachyani, Ela; Cohn, Daniel; Magdassi, Shlomo

    2016-06-01

    On page 4449, D. Cohn, S. Magdassi, and co-workers describe a general and facile method based on 3D printing of methacrylated macromonomers to fabricate shape-memory objects that can be used in flexible and responsive electrical circuits. Such responsive objects can be used in the fabrication of soft robotics, minimal invasive medical devices, sensors, and wearable electronics. The use of 3D printing overcomes the poor processing characteristics of thermosets and enables complex geometries that are not easily accessible by other techniques.

  2. Standardization of noncontact 3D measurement

    NASA Astrophysics Data System (ADS)

    Takatsuji, Toshiyuki; Osawa, Sonko; Sato, Osamu

    2008-08-01

    As the global R&D competition is intensified, more speedy measurement instruments are required both in laboratories and production process. In machinery areas, while contact type coordinate measuring machines (CMM) have been widely used, noncontact type CMMs are growing its market share which are capable of measuring enormous number of points at once. Nevertheless, since no industrial standard concerning an accuracy test of noncontact CMMs exists, each manufacturer writes the accuracy of their product according to their own rules, and this situation gives confusion to customers. The working group ISO/TC 213/WG 10 is trying to make a new ISO standard which stipulates an accuracy test of noncontact CMMs. The concept and the situation of discussion of this new standard will be explained. In National Metrology Institute of Japan (NMIJ), we are collecting measurement data which serves as a technical background of the standards together with a consortium formed by users and manufactures. This activity will also be presented.

  3. 3D shape modeling by integration visual and tactile cues

    NASA Astrophysics Data System (ADS)

    Xiong, Hanwei; Xu, Jun; Xu, Chenxi; Pan, Ming

    2015-10-01

    With the progress in CAD (Computer Aided Design) systems, many mechanical components can be designed efficiently with high precision. But, such a system is unfit for some organic shapes, for example, a toy. In this paper, an easy way to dealing with such shapes is presented, combing visual perception with tangible interaction. The method is divided into three phases: two tangible interaction phases and one visual reconstruction. In the first tangible phase, a clay model is used to represent the raw shape, and the designer can change the shape intuitively with his hands. Then the raw shape is scanned into a digital volume model through a low cost vision system. In the last tangible phase, a desktop haptic device from SensAble is used to refine the scanned volume model and convert it into a surface model. A physical clay model and a virtual clay mode are all used in this method to deal with the main shape and the details respectively, and the vision system is used to bridge the two tangible phases. The vision reconstruction system is only made of a camera to acquire raw shape through shape from silhouettes method. All of the systems are installed on a single desktop, make it convenient for designers. The vision system details and a design example are presented in the papers.

  4. Development of a 3D-AFM for true 3D measurements of nanostructures

    NASA Astrophysics Data System (ADS)

    Dai, Gaoliang; Häßler-Grohne, Wolfgang; Hüser, Dorothee; Wolff, Helmut; Danzebrink, Hans-Ulrich; Koenders, Ludger; Bosse, Harald

    2011-09-01

    The development of advanced lithography requires highly accurate 3D metrology methods for small line structures of both wafers and photomasks. Development of a new 3D atomic force microscopy (3D-AFM) with vertical and torsional oscillation modes is introduced in this paper. In its configuration, the AFM probe is oscillated using two piezo actuators driven at vertical and torsional resonance frequencies of the cantilever. In such a way, the AFM tip can probe the surface with a vertical and a lateral oscillation, offering high 3D probing sensitivity. In addition, a so-called vector approach probing (VAP) method has been applied. The sample is measured point-by-point using this method. At each probing point, the tip is approached towards the surface until the desired tip-sample interaction is detected and then immediately withdrawn from the surface. Compared to conventional AFMs, where the tip is kept continuously in interaction with the surface, the tip-sample interaction time using the VAP method is greatly reduced and consequently the tip wear is reduced. Preliminary experimental results show promising performance of the developed system. A measurement of a line structure of 800 nm height employing a super sharp AFM tip could be performed with a repeatability of its 3D profiles of better than 1 nm (p-v). A line structure of a Physikalisch-Technische Bundesanstalt photomask with a nominal width of 300 nm has been measured using a flared tip AFM probe. The repeatability of the middle CD values reaches 0.28 nm (1σ). A long-term stability investigation shows that the 3D-AFM has a high stability of better than 1 nm within 197 measurements taken over 30 h, which also confirms the very low tip wear.

  5. Multiscale 3-D shape representation and segmentation using spherical wavelets.

    PubMed

    Nain, Delphine; Haker, Steven; Bobick, Aaron; Tannenbaum, Allen

    2007-04-01

    This paper presents a novel multiscale shape representation and segmentation algorithm based on the spherical wavelet transform. This work is motivated by the need to compactly and accurately encode variations at multiple scales in the shape representation in order to drive the segmentation and shape analysis of deep brain structures, such as the caudate nucleus or the hippocampus. Our proposed shape representation can be optimized to compactly encode shape variations in a population at the needed scale and spatial locations, enabling the construction of more descriptive, nonglobal, nonuniform shape probability priors to be included in the segmentation and shape analysis framework. In particular, this representation addresses the shortcomings of techniques that learn a global shape prior at a single scale of analysis and cannot represent fine, local variations in a population of shapes in the presence of a limited dataset. Specifically, our technique defines a multiscale parametric model of surfaces belonging to the same population using a compact set of spherical wavelets targeted to that population. We further refine the shape representation by separating into groups wavelet coefficients that describe independent global and/or local biological variations in the population, using spectral graph partitioning. We then learn a prior probability distribution induced over each group to explicitly encode these variations at different scales and spatial locations. Based on this representation, we derive a parametric active surface evolution using the multiscale prior coefficients as parameters for our optimization procedure to naturally include the prior for segmentation. Additionally, the optimization method can be applied in a coarse-to-fine manner. We apply our algorithm to two different brain structures, the caudate nucleus and the hippocampus, of interest in the study of schizophrenia. We show: 1) a reconstruction task of a test set to validate the expressiveness of

  6. Cladding waveguide gratings in standard single-mode fiber for 3D shape sensing.

    PubMed

    Waltermann, Christian; Doering, Alexander; Köhring, Michael; Angelmahr, Martin; Schade, Wolfgang

    2015-07-01

    Femtosecond laser pulses were used for the direct point-by-point inscription of waveguides into the cladding of standard single-mode fibers. Homogeneous S-shaped waveguides have been processed as a bundle of overlapping lines without damaging the surrounding material. Within these structures, FBGs have been successfully inscribed and characterized. A sensor device to measure the bending direction of a fiber was created by two perpendicular inscribed cladding waveguides with FBG. Finally, a complete 3D shape sensor consisting of several bending sensor planes, capable of detecting bending radii even below 2.5 cm is demonstrated.

  7. Autonomous Real-Time Interventional Scan Plane Control With a 3-D Shape-Sensing Needle

    PubMed Central

    Plata, Juan Camilo; Holbrook, Andrew B.; Park, Yong-Lae; Pauly, Kim Butts; Daniel, Bruce L.; Cutkosky, Mark R.

    2016-01-01

    This study demonstrates real-time scan plane control dependent on three-dimensional needle bending, as measured from magnetic resonance imaging (MRI)-compatible optical strain sensors. A biopsy needle with embedded fiber Bragg grating (FBG) sensors to measure surface strains is used to estimate its full 3-D shape and control the imaging plane of an MR scanner in real-time, based on the needle’s estimated profile. The needle and scanner coordinate frames are registered to each other via miniature radio-frequency (RF) tracking coils, and the scan planes autonomously track the needle as it is deflected, keeping its tip in view. A 3-D needle annotation is superimposed over MR-images presented in a 3-D environment with the scanner’s frame of reference. Scan planes calculated based on the FBG sensors successfully follow the tip of the needle. Experiments using the FBG sensors and RF coils to track the needle shape and location in real-time had an average root mean square error of 4.2 mm when comparing the estimated shape to the needle profile as seen in high resolution MR images. This positional variance is less than the image artifact caused by the needle in high resolution SPGR (spoiled gradient recalled) images. Optical fiber strain sensors can estimate a needle’s profile in real-time and be used for MRI scan plane control to potentially enable faster and more accurate physician response. PMID:24968093

  8. Autonomous real-time interventional scan plane control with a 3-D shape-sensing needle.

    PubMed

    Elayaperumal, Santhi; Plata, Juan Camilo; Holbrook, Andrew B; Park, Yong-Lae; Pauly, Kim Butts; Daniel, Bruce L; Cutkosky, Mark R

    2014-11-01

    This study demonstrates real-time scan plane control dependent on three-dimensional needle bending, as measured from magnetic resonance imaging (MRI)-compatible optical strain sensors. A biopsy needle with embedded fiber Bragg grating (FBG) sensors to measure surface strains is used to estimate its full 3-D shape and control the imaging plane of an MR scanner in real-time, based on the needle's estimated profile. The needle and scanner coordinate frames are registered to each other via miniature radio-frequency (RF) tracking coils, and the scan planes autonomously track the needle as it is deflected, keeping its tip in view. A 3-D needle annotation is superimposed over MR-images presented in a 3-D environment with the scanner's frame of reference. Scan planes calculated based on the FBG sensors successfully follow the tip of the needle. Experiments using the FBG sensors and RF coils to track the needle shape and location in real-time had an average root mean square error of 4.2 mm when comparing the estimated shape to the needle profile as seen in high resolution MR images. This positional variance is less than the image artifact caused by the needle in high resolution SPGR (spoiled gradient recalled) images. Optical fiber strain sensors can estimate a needle's profile in real-time and be used for MRI scan plane control to potentially enable faster and more accurate physician response.

  9. Shape 4.0: 3D Shape Modeling and Processing Using Semantics.

    PubMed

    Spagnuolo, Michela

    2016-01-01

    In the last decade, sensor, communication, and computing technologies have advanced rapidly, producing dramatic changes in our daily lives and in a variety of application domains. Emerging technologies are leading us to a gradual, but inescapable integration of our material and digital realities and the advent of cyber-physical worlds. Although attaining visual realism is within the grasp of current 3D modeling approaches, it is less clear whether current modeling techniques will accommodate the needs of human communication and of the applications that we can already envisage in those futuristic worlds. Inspired by the evolution trends of the Web, this article describes the evolution of shape modeling from the Shape 1.0 geometry-only, mesh-based stage to the forthcoming semantics-driven Shape 4.0 era.

  10. Elastic shape analysis of cylindrical surfaces for 3D/2D registration in endometrial tissue characterization.

    PubMed

    Samir, Chafik; Kurtek, Sebastian; Srivastava, Anuj; Canis, Michel

    2014-05-01

    We study the problem of joint registration and deformation analysis of endometrial tissue using 3D magnetic resonance imaging (MRI) and 2D trans-vaginal ultrasound (TVUS) measurements. In addition to the different imaging techniques involved in the two modalities, this problem is complicated due to: 1) different patient pose during MRI and TVUS observations, 2) the 3D nature of MRI and 2D nature of TVUS measurements, 3) the unknown intersecting plane for TVUS in MRI volume, and 4) the potential deformation of endometrial tissue during TVUS measurement process. Focusing on the shape of the tissue, we use expert manual segmentation of its boundaries in the two modalities and apply, with modification, recent developments in shape analysis of parametric surfaces to this problem. First, we extend the 2D TVUS curves to generalized cylindrical surfaces through replication, and then we compare them with MRI surfaces using elastic shape analysis. This shape analysis provides a simultaneous registration (optimal reparameterization) and deformation (geodesic) between any two parametrized surfaces. Specifically, it provides optimal curves on MRI surfaces that match with the original TVUS curves. This framework results in an accurate quantification and localization of the deformable endometrial cells for radiologists, and growth characterization for gynecologists and obstetricians. We present experimental results using semi-synthetic data and real data from patients to illustrate these ideas.

  11. 3D morphological measurement of whole slide histological vasculature reconstructions

    NASA Astrophysics Data System (ADS)

    Xu, Yiwen; Pickering, J. G.; Nong, Zengxuan; Ward, Aaron D.

    2016-03-01

    Properties of the microvasculature that contribute to tissue perfusion can be assessed using immunohistochemistry on 2D histology sections. However, the vasculature is inherently 3D and the ability to measure and visualize the vessel wall components in 3D will aid in detecting focal pathologies. Our objectives were (1) to develop a method for 3D measurement and visualization of microvasculature in 3D, (2) to compare the normal and regenerated post-ischemia mouse hind limb microvasculature, and (3) to compare the 2D and 3D vessel morphology measures. Vessels were stained for smooth muscle using 3,3'-Diaminobenzidine (DAB) immunostain for both normal (n = 6 mice) and regenerated vasculature (n = 5 mice). 2D vessel segmentations were reconstructed into 3D using landmark based registration. No substantial bias was found in the 2D measurements relative to 3D, but larger differences were observed for individual vessels oriented non-orthogonally to the plane of sectioning. A larger value of area, perimeter, and vessel wall thickness was found in the normal vasculature as compared to the regenerated vasculature, for both the 2D and 3D measurements (p < 0.01). Aggregated 2D measurements are sufficient for identifying morphological differences between groups of mice; however, one must interpret individual 2D measurements with caution if the vessel centerline direction is unknown. Visualization of 3D measurements permits the detection of localized vessel morphology aberrations that are not revealed by 2D measurements. With vascular measure visualization methodologies in 3D, we are now capable of locating focal pathologies on a whole slide level.

  12. Conformal geometry and its applications on 3D shape matching, recognition, and stitching.

    PubMed

    Wang, Sen; Wang, Yang; Jin, Miao; Gu, Xianfeng David; Samaras, Dimitris

    2007-07-01

    Three-dimensional shape matching is a fundamental issue in computer vision with many applications such as shape registration, 3D object recognition, and classification. However, shape matching with noise, occlusion, and clutter is a challenging problem. In this paper, we analyze a family of quasi-conformal maps including harmonic maps, conformal maps, and least-squares conformal maps with regards to 3D shape matching. As a result, we propose a novel and computationally efficient shape matching framework by using least-squares conformal maps. According to conformal geometry theory, each 3D surface with disk topology can be mapped to a 2D domain through a global optimization and the resulting map is a diffeomorphism, i.e., one-to-one and onto. This allows us to simplify the 3D shape-matching problem to a 2D image-matching problem, by comparing the resulting 2D parametric maps, which are stable, insensitive to resolution changes and robust to occlusion, and noise. Therefore, highly accurate and efficient 3D shape matching algorithms can be achieved by using the above three parametric maps. Finally, the robustness of least-squares conformal maps is evaluated and analyzed comprehensively in 3D shape matching with occlusion, noise, and resolution variation. In order to further demonstrate the performance of our proposed method, we also conduct a series of experiments on two computer vision applications, i.e., 3D face recognition and 3D nonrigid surface alignment and stitching.

  13. 3D Printing of Shape Memory Polymers for Flexible Electronic Devices.

    PubMed

    Zarek, Matt; Layani, Michael; Cooperstein, Ido; Sachyani, Ela; Cohn, Daniel; Magdassi, Shlomo

    2016-06-01

    The formation of 3D objects composed of shape memory polymers for flexible electronics is described. Layer-by-layer photopolymerization of methacrylated semicrystalline molten macromonomers by a 3D digital light processing printer enables rapid fabrication of complex objects and imparts shape memory functionality for electrical circuits.

  14. 3D Shape Perception in Posterior Cortical Atrophy: A Visual Neuroscience Perspective

    PubMed Central

    Gillebert, Céline R.; Schaeverbeke, Jolien; Bastin, Christine; Neyens, Veerle; Bruffaerts, Rose; De Weer, An-Sofie; Seghers, Alexandra; Sunaert, Stefan; Van Laere, Koen; Versijpt, Jan; Vandenbulcke, Mathieu; Salmon, Eric; Todd, James T.; Orban, Guy A.

    2015-01-01

    Posterior cortical atrophy (PCA) is a rare focal neurodegenerative syndrome characterized by progressive visuoperceptual and visuospatial deficits, most often due to atypical Alzheimer's disease (AD). We applied insights from basic visual neuroscience to analyze 3D shape perception in humans affected by PCA. Thirteen PCA patients and 30 matched healthy controls participated, together with two patient control groups with diffuse Lewy body dementia (DLBD) and an amnestic-dominant phenotype of AD, respectively. The hierarchical study design consisted of 3D shape processing for 4 cues (shading, motion, texture, and binocular disparity) with corresponding 2D and elementary feature extraction control conditions. PCA and DLBD exhibited severe 3D shape-processing deficits and AD to a lesser degree. In PCA, deficient 3D shape-from-shading was associated with volume loss in the right posterior inferior temporal cortex. This region coincided with a region of functional activation during 3D shape-from-shading in healthy controls. In PCA patients who performed the same fMRI paradigm, response amplitude during 3D shape-from-shading was reduced in this region. Gray matter volume in this region also correlated with 3D shape-from-shading in AD. 3D shape-from-disparity in PCA was associated with volume loss slightly more anteriorly in posterior inferior temporal cortex as well as in ventral premotor cortex. The findings in right posterior inferior temporal cortex and right premotor cortex are consistent with neurophysiologically based models of the functional anatomy of 3D shape processing. However, in DLBD, 3D shape deficits rely on mechanisms distinct from inferior temporal structural integrity. SIGNIFICANCE STATEMENT Posterior cortical atrophy (PCA) is a neurodegenerative syndrome characterized by progressive visuoperceptual dysfunction and most often an atypical presentation of Alzheimer's disease (AD) affecting the ventral and dorsal visual streams rather than the medial

  15. a Fast Method for Measuring the Similarity Between 3d Model and 3d Point Cloud

    NASA Astrophysics Data System (ADS)

    Zhang, Zongliang; Li, Jonathan; Li, Xin; Lin, Yangbin; Zhang, Shanxin; Wang, Cheng

    2016-06-01

    This paper proposes a fast method for measuring the partial Similarity between 3D Model and 3D point Cloud (SimMC). It is crucial to measure SimMC for many point cloud-related applications such as 3D object retrieval and inverse procedural modelling. In our proposed method, the surface area of model and the Distance from Model to point Cloud (DistMC) are exploited as measurements to calculate SimMC. Here, DistMC is defined as the weighted distance of the distances between points sampled from model and point cloud. Similarly, Distance from point Cloud to Model (DistCM) is defined as the average distance of the distances between points in point cloud and model. In order to reduce huge computational burdens brought by calculation of DistCM in some traditional methods, we define SimMC as the ratio of weighted surface area of model to DistMC. Compared to those traditional SimMC measuring methods that are only able to measure global similarity, our method is capable of measuring partial similarity by employing distance-weighted strategy. Moreover, our method is able to be faster than other partial similarity assessment methods. We demonstrate the superiority of our method both on synthetic data and laser scanning data.

  16. Implementation and Validation of 3-D Ice Accretion Measurement Methodology

    NASA Technical Reports Server (NTRS)

    Lee, Sam; Broeren, Andy; Kreeger, Richard; Potapczuk, Mark; Utt, Lloyd

    2014-01-01

    A research program has been implemented to develop and validate the use of a commercial 3-D laser scanning system to record ice accretion geometry in the NASA Icing Research Tunnel. A main component of the program was the geometric assessment of the 3-D laser scanning system on a 2-D (straight wing) and a 3-D (swept wing) airfoil geometries. This exercise consisted of comparison of scanned ice accretion to castings of the same ice accretion. The scan data were also used to create rapid prototype artificial ice shapes that were scanned and compared to the original ice accretion.The results from geometric comparisons on the straight wing showed that the ice shape models generated through the scanrapid prototype process compared reasonably well with the cast shapes. Similar results were obtained with the geometric comparisons on the swept wing. It was difficult to precisely compare the scans of the cast shapes to the original ice accretion scans because the cast shapes appear to have shrunk during the moldcasting process by as much as 0.10-inch. However the comparison of the local ice-shape features were possible and produced better results. The rapid prototype manufacturing process was shown to reproduce the original ice accretion scan normally within 0.01-inch.

  17. Implementation and Validation of 3-D Ice Accretion Measurement Methodology

    NASA Technical Reports Server (NTRS)

    Lee, Sam; Broeren, Andy P.; Kreeger, Richard E.; Potapczuk, Mark; Utt, Lloyd

    2014-01-01

    A research program has been implemented to develop and validate the use of a commercial 3-D laser scanning system to record ice accretion geometry in the NASA Icing Research Tunnel. A main component of the program was the geometric assessment of the 3- D laser scanning system on a 2-D (straight wing) and a 3-D (swept wing) airfoil geometries. This exercise consisted of comparison of scanned ice accretion to castings of the same ice accretion. The scan data were also used to create rapid prototype artificial ice shapes that were scanned and compared to the original ice accretion. The results from geometric comparisons on the straight wing showed that the ice shape models generated through the scan/rapid prototype process compared reasonably well with the cast shapes. Similar results were obtained with the geometric comparisons on the swept wing. It was difficult to precisely compare the scans of the cast shapes to the original ice accretion scans because the cast shapes appear to have shrunk during the mold/casting process by as much as 0.10-inch. However the comparison of the local ice-shape features were possible and produced better results. The rapid prototype manufacturing process was shown to reproduce the original ice accretion scan normally within 0.01-inch.

  18. Sequential Self-Folding Structures by 3D Printed Digital Shape Memory Polymers

    PubMed Central

    Mao, Yiqi; Yu, Kai; Isakov, Michael S.; Wu, Jiangtao; Dunn, Martin L.; Jerry Qi, H.

    2015-01-01

    Folding is ubiquitous in nature with examples ranging from the formation of cellular components to winged insects. It finds technological applications including packaging of solar cells and space structures, deployable biomedical devices, and self-assembling robots and airbags. Here we demonstrate sequential self-folding structures realized by thermal activation of spatially-variable patterns that are 3D printed with digital shape memory polymers, which are digital materials with different shape memory behaviors. The time-dependent behavior of each polymer allows the temporal sequencing of activation when the structure is subjected to a uniform temperature. This is demonstrated via a series of 3D printed structures that respond rapidly to a thermal stimulus, and self-fold to specified shapes in controlled shape changing sequences. Measurements of the spatial and temporal nature of self-folding structures are in good agreement with the companion finite element simulations. A simplified reduced-order model is also developed to rapidly and accurately describe the self-folding physics. An important aspect of self-folding is the management of self-collisions, where different portions of the folding structure contact and then block further folding. A metric is developed to predict collisions and is used together with the reduced-order model to design self-folding structures that lock themselves into stable desired configurations. PMID:26346202

  19. Sequential Self-Folding Structures by 3D Printed Digital Shape Memory Polymers.

    PubMed

    Mao, Yiqi; Yu, Kai; Isakov, Michael S; Wu, Jiangtao; Dunn, Martin L; Jerry Qi, H

    2015-09-08

    Folding is ubiquitous in nature with examples ranging from the formation of cellular components to winged insects. It finds technological applications including packaging of solar cells and space structures, deployable biomedical devices, and self-assembling robots and airbags. Here we demonstrate sequential self-folding structures realized by thermal activation of spatially-variable patterns that are 3D printed with digital shape memory polymers, which are digital materials with different shape memory behaviors. The time-dependent behavior of each polymer allows the temporal sequencing of activation when the structure is subjected to a uniform temperature. This is demonstrated via a series of 3D printed structures that respond rapidly to a thermal stimulus, and self-fold to specified shapes in controlled shape changing sequences. Measurements of the spatial and temporal nature of self-folding structures are in good agreement with the companion finite element simulations. A simplified reduced-order model is also developed to rapidly and accurately describe the self-folding physics. An important aspect of self-folding is the management of self-collisions, where different portions of the folding structure contact and then block further folding. A metric is developed to predict collisions and is used together with the reduced-order model to design self-folding structures that lock themselves into stable desired configurations.

  20. Sequential Self-Folding Structures by 3D Printed Digital Shape Memory Polymers

    NASA Astrophysics Data System (ADS)

    Mao, Yiqi; Yu, Kai; Isakov, Michael S.; Wu, Jiangtao; Dunn, Martin L.; Jerry Qi, H.

    2015-09-01

    Folding is ubiquitous in nature with examples ranging from the formation of cellular components to winged insects. It finds technological applications including packaging of solar cells and space structures, deployable biomedical devices, and self-assembling robots and airbags. Here we demonstrate sequential self-folding structures realized by thermal activation of spatially-variable patterns that are 3D printed with digital shape memory polymers, which are digital materials with different shape memory behaviors. The time-dependent behavior of each polymer allows the temporal sequencing of activation when the structure is subjected to a uniform temperature. This is demonstrated via a series of 3D printed structures that respond rapidly to a thermal stimulus, and self-fold to specified shapes in controlled shape changing sequences. Measurements of the spatial and temporal nature of self-folding structures are in good agreement with the companion finite element simulations. A simplified reduced-order model is also developed to rapidly and accurately describe the self-folding physics. An important aspect of self-folding is the management of self-collisions, where different portions of the folding structure contact and then block further folding. A metric is developed to predict collisions and is used together with the reduced-order model to design self-folding structures that lock themselves into stable desired configurations.

  1. Development of 3-D Ice Accretion Measurement Method

    NASA Technical Reports Server (NTRS)

    Lee, Sam; Broeren, Andy P.; Addy, Harold E., Jr.; Sills, Robert; Pifer, Ellen M.

    2012-01-01

    A research plan is currently being implemented by NASA to develop and validate the use of a commercial laser scanner to record and archive fully three-dimensional (3-D) ice shapes from an icing wind tunnel. The plan focused specifically upon measuring ice accreted in the NASA Icing Research Tunnel (IRT). The plan was divided into two phases. The first phase was the identification and selection of the laser scanning system and the post-processing software to purchase and develop further. The second phase was the implementation and validation of the selected system through a series of icing and aerodynamic tests. Phase I of the research plan has been completed. It consisted of evaluating several scanning hardware and software systems against an established selection criteria through demonstrations in the IRT. The results of Phase I showed that all of the scanning systems that were evaluated were equally capable of scanning ice shapes. The factors that differentiated the scanners were ease of use and the ability to operate in a wide range of IRT environmental conditions.

  2. Flow integration transform: detecting shapes in matrix-array 3D ultrasound data

    NASA Astrophysics Data System (ADS)

    Stetten, George D.; Caines, Michael; von Ramm, Olaf T.

    1995-03-01

    Matrix-array ultrasound produces real-time 3D images of the heart, by employing a square array of transducers to steer the ultrasound beam in three dimensions electronically with no moving parts. Other 3D modalities such as MR, MUGA, and CT require the use of gated studies, which combine many cardiac cycles to produce a single average cycle. Three- dimensional ultrasound eliminates this restriction, in theory permitting the continuous measurement of cardiac ventricular volume, which we call the volumetricardiogram. Towards implementing the volumetricardiogram, we have developed the flow integration transform (FIT), which operates on a 2D slice within the volumetric ultrasound data. The 3D ultrasound machine's scan converter produces a set of such slices in real time, at any desired location and orientation, to which the FIT may then be applied. Although lacking rotational or scale invariance, the FIT is designed to operate in dedicated hardware where an entire transform could be completed within a few microseconds with present integrated circuit technology. This speed would permit the application of a large battery of test shapes, or the evolution of the test shape to converge on that of the actual target.

  3. Shape design sensitivities using fully automatic 3-D mesh generation

    NASA Technical Reports Server (NTRS)

    Botkin, M. E.

    1990-01-01

    Previous work in three dimensional shape optimization involved specifying design variables by associating parameters directly with mesh points. More recent work has shown the use of fully-automatic mesh generation based upon a parameterized geometric representation. Design variables have been associated with a mathematical model of the part rather than the discretized representation. The mesh generation procedure uses a nonuniform grid intersection technique to place nodal points directly on the surface geometry. Although there exists an associativity between the mesh and the geometrical/topological entities, there is no mathematical functional relationship. This poses a problem during certain steps in the optimization process in which geometry modification is required. For the large geometrical changes which occur at the beginning of each optimization step, a completely new mesh is created. However, for gradient calculations many small changes must be made and it would be too costly to regenerate the mesh for each design variable perturbation. For that reason, a local remeshing procedure has been implemented which operates only on the specific edges and faces associated with the design variable being perturbed. Two realistic design problems are presented which show the efficiency of this process and test the accuracy of the gradient computations.

  4. Experimental investigation on a novel 3D isolator made of shape memory alloy pseudo-rubber

    NASA Astrophysics Data System (ADS)

    Li, Su-chao; Guo, An-xin; Mao, Chen-xi; Li, Hui; Zhao, Yagebai

    2015-04-01

    Base isolation technology has been widely theoretically and experimentally investigated, and it has also been verified through many severe earthquakes. Three dimensional (3-D) isolation technology was proposed several years ago, and the 3-D isolation theory has well developed till now. However, the development of 3-D isolation technology was deeply affected by the 3-D isolator devices. Many presented 3-D isolators are generally made up of complicated components, such as rubber, springs, dampers or theirs combinations. These isolators have some problem in certain extent, such as difficult fabrication process or little energy dissipation ability along the vertical direction. This paper presents a novel 3- D isolator which is made up of martensitic shape memory alloy wires through weaving, rolling, and punching. Mechanical properties of 3-D shape memory alloy pseudo-rubber isolator (SMAPRI) are investigated including compression, shear, and compression-shear loading with different frequencies and amplitudes. The mechanical behavior of isolators with different parameters is also compared. Accordingly, the mechanism resulting in the above differences is also analyzed. Experimental results indicated that 3-D SMAPRI has good mechanical properties and energy dissipation ability along both of horizontal and vertical direction. The fabrication process of the proposed 3-D isolator is relatively easy and the mechanism of isolation is clearer than the traditional 3-D isolators. Therefore, this new kind of 3-D isolator has good potentiality in both of seismic isolation for civil infrastructures and industrial isolation for important or precision equipment.

  5. Depth cues versus the simplicity principle in 3D shape perception.

    PubMed

    Li, Yunfeng; Pizlo, Zygmunt

    2011-10-01

    Two experiments were performed to explore the mechanisms of human 3D shape perception. In Experiment 1, the subjects' performance in a shape constancy task in the presence of several cues (edges, binocular disparity, shading and texture) was tested. The results show that edges and binocular disparity, but not shading or texture, are important in 3D shape perception. Experiment 2 tested the effect of several simplicity constraints, such as symmetry and planarity on subjects' performance in a shape constancy task. The 3D shapes were represented by edges or vertices only. The results show that performance with or without binocular disparity is at chance level, unless the 3D shape is symmetric and/or its faces are planar. In both experiments, there was a correlation between the subjects' performance with and without binocular disparity. Our study suggests that simplicity constraints, not depth cues, play the primary role in both monocular and binocular 3D shape perception. These results are consistent with our computational model of 3D shape recovery.

  6. Accommodation response measurements for integral 3D image

    NASA Astrophysics Data System (ADS)

    Hiura, H.; Mishina, T.; Arai, J.; Iwadate, Y.

    2014-03-01

    We measured accommodation responses under integral photography (IP), binocular stereoscopic, and real object display conditions, and viewing conditions of binocular and monocular viewing conditions. The equipment we used was an optometric device and a 3D display. We developed the 3D display for IP and binocular stereoscopic images that comprises a high-resolution liquid crystal display (LCD) and a high-density lens array. The LCD has a resolution of 468 dpi and a diagonal size of 4.8 inches. The high-density lens array comprises 106 x 69 micro lenses that have a focal length of 3 mm and diameter of 1 mm. The lenses are arranged in a honeycomb pattern. The 3D display was positioned 60 cm from an observer under IP and binocular stereoscopic display conditions. The target was presented at eight depth positions relative to the 3D display: 15, 10, and 5 cm in front of the 3D display, on the 3D display panel, and 5, 10, 15 and 30 cm behind the 3D display under the IP and binocular stereoscopic display conditions. Under the real object display condition, the target was displayed on the 3D display panel, and the 3D display was placed at the eight positions. The results suggest that the IP image induced more natural accommodation responses compared to the binocular stereoscopic image. The accommodation responses of the IP image were weaker than those of a real object; however, they showed a similar tendency with those of the real object under the two viewing conditions. Therefore, IP can induce accommodation to the depth positions of 3D images.

  7. Experimental and Numerical Investigation of Forging Process to Reproduce a 3D Aluminium Foam Complex Shape

    SciTech Connect

    Filice, Luigino; Gagliardi, Francesco; Umbrello, Domenico; Shivpuri, Rajiv

    2007-05-17

    Metallic foams represent one of the most exciting materials introduced in the manufacturing scenario in the last years. In the study here addressed, the experimental and numerical investigations on the forging process of a simple foam billet shaped into complex sculptured parts were carried out. In particular, the deformation behavior of metallic foams and the development of density gradients were investigated through a series of experimental forging tests in order to produce a selected portion of a hip prosthesis. The human bone replacement was chosen as case study due to its industrial demand and for its particular 3D complex shape. A finite element code (Deform 3D) was utilized for modeling the foam behavior during the forging process and an accurate material rheology description was used based on a porous material model which includes the measured local density. Once the effectiveness of the utilized Finite Element model was verified through the comparison with the experimental evidences, a numerical study of the influence of the foam density was investigated. The obtained numerical results shown as the initial billet density plays an important role on the prediction of the final shape, the optimization of the flash as well as the estimation of the punch load.

  8. 3D-shape-based retrieval within the MPEG-7 framework

    NASA Astrophysics Data System (ADS)

    Zaharia, Titus; Preteux, Francoise J.

    2001-05-01

    Because of the continuous development of multimedia technologies, virtual worlds and augmented reality, 3D contents become a common feature of the today information systems. Hence, standardizing tools for content-based indexing of visual data is a key issue for computer vision related applications. Within the framework of the future MPEG-7 standard, tools for intelligent content-based access to 3D information, targeting applications such as search and retrieval and browsing of 3D model databases, have been recently considered and evaluated. In this paper, we present the 3D Shape Spectrum Descriptor (3D SSD), recently adopted within the current MPEG-7 Committee Draft (CD). The proposed descriptor aims at providing an intrinsic shape description of a 3D mesh and is defined as the distribution of the shape index over the entire mesh. The shape index is a local geometric attribute of a 3D surface, expressed as the angular coordinate of a polar representation of the principal curvature vector. Experimental results have been carried out upon the MPEG-7 3D model database consisting of about 1300 meshes in VRML 2.0 format. Objective retrieval results, based upon the definition of a ground truth subset, are reported in terms of Bull Eye Percentage (BEP) score.

  9. Synthesis of image sequences for Korean sign language using 3D shape model

    NASA Astrophysics Data System (ADS)

    Hong, Mun-Ho; Choi, Chang-Seok; Kim, Chang-Seok; Jeon, Joon-Hyeon

    1995-05-01

    This paper proposes a method for offering information and realizing communication to the deaf-mute. The deaf-mute communicates with another person by means of sign language, but most people are unfamiliar with it. This method enables to convert text data into the corresponding image sequences for Korean sign language (KSL). Using a general 3D shape model of the upper body leads to generating the 3D motions of KSL. It is necessary to construct the general 3D shape model considering the anatomical structure of the human body. To obtain a personal 3D shape model, this general model is to adjust to the personal base images. Image synthesis for KSL consists of deforming a personal 3D shape model and texture-mapping the personal images onto the deformed model. The 3D motions for KSL have the facial expressions and the 3D movements of the head, trunk, arms and hands and are parameterized for easily deforming the model. These motion parameters of the upper body are extracted from a skilled signer's motion for each KSL and are stored to the database. Editing the parameters according to the inputs of text data yields to generate the image sequences of 3D motions.

  10. Lung lobe segmentation by graph search with 3D shape constraints

    NASA Astrophysics Data System (ADS)

    Zhang, Li; Hoffman, Eric A.; Reinhardt, Joseph M.

    2001-05-01

    The lung lobes are natural units for reporting image-based measurements of the respiratory system. Lobar segmentation can also be used in pulmonary image processing to guide registration and drive additional segmentation. We have developed a 3D shape-constrained lobar segmentation technique for volumetric pulmonary CT images. The method consists of a search engine and shape constraints that work together to detect lobar fissures using gray level information and anatomic shape characteristics in two steps: (1) a coarse localization step, (2) a fine tuning step. An error detecting mechanism using shape constraints is used in our method to correct erroneous search results. Our method has been tested in four subjects, and the results are compared to manually traced results. The average RMS difference between the manual results and shape-constrained segmentation results is 2.23 mm. We further validated our method by evaluating the repeatability of lobar volumes measured from repeat scans of the same subject. We compared lobar air and tissue volume variations to show that most of the lobar volume variations are due to difference in air volume scan to scan.

  11. Shape analysis of corpus callosum in phenylketonuria using a new 3D correspondence algorithm

    NASA Astrophysics Data System (ADS)

    He, Qing; Christ, Shawn E.; Karsch, Kevin; Peck, Dawn; Duan, Ye

    2010-03-01

    Statistical shape analysis of brain structures has gained increasing interest from neuroimaging community because it can precisely locate shape differences between healthy and pathological structures. The most difficult and crucial problem is establishing shape correspondence among individual 3D shapes. This paper proposes a new algorithm for 3D shape correspondence. A set of landmarks are sampled on a template shape, and initial correspondence is established between the template and the target shape based on the similarity of locations and normal directions. The landmarks on the target are then refined by iterative thin plate spline. The algorithm is simple and fast, and no spherical mapping is needed. We apply our method to the statistical shape analysis of the corpus callosum (CC) in phenylketonuria (PKU), and significant local shape differences between the patients and the controls are found in the most anterior and posterior aspects of the corpus callosum.

  12. The ATLAS 3D project - XXIV. The intrinsic shape distribution of early-type galaxies

    NASA Astrophysics Data System (ADS)

    Weijmans, Anne-Marie; de Zeeuw, P. T.; Emsellem, Eric; Krajnović, Davor; Lablanche, Pierre-Yves; Alatalo, Katherine; Blitz, Leo; Bois, Maxime; Bournaud, Frédéric; Bureau, Martin; Cappellari, Michele; Crocker, Alison F.; Davies, Roger L.; Davis, Timothy A.; Duc, Pierre-Alain; Khochfar, Sadegh; Kuntschner, Harald; McDermid, Richard M.; Morganti, Raffaella; Naab, Thorsten; Oosterloo, Tom; Sarzi, Marc; Scott, Nicholas; Serra, Paolo; Verdoes Kleijn, Gijs; Young, Lisa M.

    2014-11-01

    We use the ATLAS3D sample to perform a study of the intrinsic shapes of early-type galaxies, taking advantage of the available combined photometric and kinematic data. Based on our ellipticity measurements from the Sloan Digital Sky Survey Data Release 7, and additional imaging from the Isaac Newton Telescope, we first invert the shape distribution of fast and slow rotators under the assumption of axisymmetry. The so-obtained intrinsic shape distribution for the fast rotators can be described with a Gaussian with a mean flattening of q = 0.25 and standard deviation σq = 0.14, and an additional tail towards rounder shapes. The slow rotators are much rounder, and are well described with a Gaussian with mean q = 0.63 and σq = 0.09. We then checked that our results were consistent when applying a different and independent method to obtain intrinsic shape distributions, by fitting the observed ellipticity distributions directly using Gaussian parametrizations for the intrinsic axis ratios. Although both fast and slow rotators are identified as early-type galaxies in morphological studies, and in many previous shape studies are therefore grouped together, their shape distributions are significantly different, hinting at different formation scenarios. The intrinsic shape distribution of the fast rotators shows similarities with the spiral galaxy population. Including the observed kinematic misalignment in our intrinsic shape study shows that the fast rotators are predominantly axisymmetric, with only very little room for triaxiality. For the slow rotators though there are very strong indications that they are (mildly) triaxial.

  13. 3D-profile measurement of advanced semiconductor features by reference metrology

    NASA Astrophysics Data System (ADS)

    Takamasu, Kiyoshi; Iwaki, Yuuki; Takahashi, Satoru; Kawada, Hiroki; Ikota, Masami; Lorusso, Gian F.; Horiguchi, Naoto

    2016-03-01

    A method of sub-nanometer uncertainty for the 3D-profile measurement using TEM (Transmission Electron Microscope) images is proposed to standardize 3D-profile measurement through reference metrology. The proposed method has been validated for profiles of Si lines, photoresist features and advanced-FinFET (Fin-shaped Field-Effect Transistor) features in our previous investigations. However, efficiency of 3D-profile measurement using TEM is limited by measurement time including processing of the sample. In this article, we demonstrate a novel on-wafer 3D-profile metrology as "FIB-to-CDSEM method" with FIB (Focused Ion Beam) slope cut and CD-SEM (Critical Dimension Secondary Electron Microscope) measuring. Using the method, a few micrometer wide on a wafer is coated and cut by 45 degree slope using FIB tool. Then, the wafer is transferred to CD-SEM to measure the cross section image by top down CD-SEM measurement. We apply FIB-to-CDSEM method to CMOS sensor device. 3D-profile and 3D-profile parameters such as top line width and side wall angles of CMOS sensor device are evaluated. The 3D-profile parameters also are measured by TEM images as reference metrology. We compare the 3D-profile parameters by TEM method and FIB-to-CDSEM method. The average values and correlations on the wafer are agreed well between TEM and FIB-to- CDSEM methods.

  14. 3D Printed Reversible Shape Changing Components with Stimuli Responsive Materials

    PubMed Central

    Mao, Yiqi; Ding, Zhen; Yuan, Chao; Ai, Shigang; Isakov, Michael; Wu, Jiangtao; Wang, Tiejun; Dunn, Martin L.; Qi, H. Jerry

    2016-01-01

    The creation of reversibly-actuating components that alter their shapes in a controllable manner in response to environmental stimuli is a grand challenge in active materials, structures, and robotics. Here we demonstrate a new reversible shape-changing component design concept enabled by 3D printing two stimuli responsive polymers—shape memory polymers and hydrogels—in prescribed 3D architectures. This approach uses the swelling of a hydrogel as the driving force for the shape change, and the temperature-dependent modulus of a shape memory polymer to regulate the time of such shape change. Controlling the temperature and aqueous environment allows switching between two stable configurations – the structures are relatively stiff and can carry load in each – without any mechanical loading and unloading. Specific shape changing scenarios, e.g., based on bending, or twisting in prescribed directions, are enabled via the controlled interplay between the active materials and the 3D printed architectures. The physical phenomena are complex and nonintuitive, and so to help understand the interplay of geometric, material, and environmental stimuli parameters we develop 3D nonlinear finite element models. Finally, we create several 2D and 3D shape changing components that demonstrate the role of key parameters and illustrate the broad application potential of the proposed approach. PMID:27109063

  15. 3D Printed Reversible Shape Changing Components with Stimuli Responsive Materials.

    PubMed

    Mao, Yiqi; Ding, Zhen; Yuan, Chao; Ai, Shigang; Isakov, Michael; Wu, Jiangtao; Wang, Tiejun; Dunn, Martin L; Qi, H Jerry

    2016-04-25

    The creation of reversibly-actuating components that alter their shapes in a controllable manner in response to environmental stimuli is a grand challenge in active materials, structures, and robotics. Here we demonstrate a new reversible shape-changing component design concept enabled by 3D printing two stimuli responsive polymers-shape memory polymers and hydrogels-in prescribed 3D architectures. This approach uses the swelling of a hydrogel as the driving force for the shape change, and the temperature-dependent modulus of a shape memory polymer to regulate the time of such shape change. Controlling the temperature and aqueous environment allows switching between two stable configurations - the structures are relatively stiff and can carry load in each - without any mechanical loading and unloading. Specific shape changing scenarios, e.g., based on bending, or twisting in prescribed directions, are enabled via the controlled interplay between the active materials and the 3D printed architectures. The physical phenomena are complex and nonintuitive, and so to help understand the interplay of geometric, material, and environmental stimuli parameters we develop 3D nonlinear finite element models. Finally, we create several 2D and 3D shape changing components that demonstrate the role of key parameters and illustrate the broad application potential of the proposed approach.

  16. 3D Printed Reversible Shape Changing Components with Stimuli Responsive Materials

    NASA Astrophysics Data System (ADS)

    Mao, Yiqi; Ding, Zhen; Yuan, Chao; Ai, Shigang; Isakov, Michael; Wu, Jiangtao; Wang, Tiejun; Dunn, Martin L.; Qi, H. Jerry

    2016-04-01

    The creation of reversibly-actuating components that alter their shapes in a controllable manner in response to environmental stimuli is a grand challenge in active materials, structures, and robotics. Here we demonstrate a new reversible shape-changing component design concept enabled by 3D printing two stimuli responsive polymers—shape memory polymers and hydrogels—in prescribed 3D architectures. This approach uses the swelling of a hydrogel as the driving force for the shape change, and the temperature-dependent modulus of a shape memory polymer to regulate the time of such shape change. Controlling the temperature and aqueous environment allows switching between two stable configurations – the structures are relatively stiff and can carry load in each – without any mechanical loading and unloading. Specific shape changing scenarios, e.g., based on bending, or twisting in prescribed directions, are enabled via the controlled interplay between the active materials and the 3D printed architectures. The physical phenomena are complex and nonintuitive, and so to help understand the interplay of geometric, material, and environmental stimuli parameters we develop 3D nonlinear finite element models. Finally, we create several 2D and 3D shape changing components that demonstrate the role of key parameters and illustrate the broad application potential of the proposed approach.

  17. The 3D EdgeRunner Pipeline: a novel shape-based analysis for neoplasms characterization

    NASA Astrophysics Data System (ADS)

    Yepes-C, Fernando; Johnson, Rebecca; Lao, Yi; Hwang, Darryl; Coloigner, Julie; Yap, Felix; Bushan, Desai; Cheng, Phillip; Gill, Inderbir; Duddalwar, Vinay; Lepore, Natasha

    2016-03-01

    The characterization of tumors after being imaged is currently a qualitative process performed by skilled professionals. If we can aid their diagnosis by identifying quantifiable features associated with tumor classification, we may avoid invasive procedures such as biopsies and enhance efficiency. The aim of this paper is to describe the 3D EdgeRunner Pipeline which characterizes the shape of a tumor. Shape analysis is relevant as malignant tumors tend to be more lobular and benign ones tare generally more symmetrical. The method described considers the distance from each point on the edge of the tumor to the centre of a synthetically created field of view. The method then determines coordinates where the measured distances are rapidly changing (peaks) using a second derivative found by five point differentiation. The list of coordinates considered to be peaks can then be used as statistical data to compare tumors quantitatively. We have found this process effectively captures the peaks on a selection of kidney tumors.

  18. 3D measurement system based on computer-generated gratings

    NASA Astrophysics Data System (ADS)

    Zhu, Yongjian; Pan, Weiqing; Luo, Yanliang

    2010-08-01

    A new kind of 3D measurement system has been developed to achieve the 3D profile of complex object. The principle of measurement system is based on the triangular measurement of digital fringe projection, and the fringes are fully generated from computer. Thus the computer-generated four fringes form the data source of phase-shifting 3D profilometry. The hardware of system includes the computer, video camera, projector, image grabber, and VGA board with two ports (one port links to the screen, another to the projector). The software of system consists of grating projection module, image grabbing module, phase reconstructing module and 3D display module. A software-based synchronizing method between grating projection and image capture is proposed. As for the nonlinear error of captured fringes, a compensating method is introduced based on the pixel-to-pixel gray correction. At the same time, a least square phase unwrapping is used to solve the problem of phase reconstruction by using the combination of Log Modulation Amplitude and Phase Derivative Variance (LMAPDV) as weight. The system adopts an algorithm from Matlab Tool Box for camera calibration. The 3D measurement system has an accuracy of 0.05mm. The execution time of system is 3~5s for one-time measurement.

  19. Modeling and analysis of 3-D elongated shapes with applications to long bone morphometry

    SciTech Connect

    Burdin, V.; Roux, C.; Lefevre, C.; Stindel, E.

    1996-02-01

    This paper presents a geometric model to be used as a framework for the description and analysis of three-dimensional (3-D) elongated shapes. Elongated shapes can be decomposed into two different parts: a 3-D curve (the central axis) and a 3-D surface (the straight surface). The central axis is described in terms of curvature and torsion. A novel concept of torsion image is introduced which allows the user to study the torsion of some relevant 3-D structures such as the medulla of long bones, without computing the third derivative. The description of the straight surface is based on an ordered set of Fourier Descriptors (FD`s), each set representing a 2-D slice of the structure. These descriptors possess completeness, continuity, and stability properties, and some geometrical invariancies. A polar diagram is built which contains the anatomical information of the straight surface and can be used as a tool for the analysis and discrimination of 3-D structures. A technique for the reconstruction of the 3-D surface from the model`s two components is presented. Various applications to the analysis of long bone structures, such as the ulna and radius, are derived from the model, namely, data compression, comparison of 3-D shapes, segmentation into 3-D primitives, and torsion and curvature analysis. The relevance of the method to morphometry and to clinical applications is discussed.

  20. 3D shape analysis for early diagnosis of malignant lung nodules.

    PubMed

    El-Baz, Ayman; Nitzken, Matthew; Elnakib, Ahmed; Khalifa, Fahmi; Gimel'farb, Georgy; Falk, Robert; El-Ghar, Mohamed Abou

    2011-01-01

    An alternative method of diagnosing malignant lung nodules by their shape, rather than conventional growth rate, is proposed. The 3D surfaces of the detected lung nodules are delineated by spherical harmonic analysis that represents a 3D surface of the lung nodule supported by the unit sphere with a linear combination of special basis functions, called Spherical Harmonics (SHs). The proposed 3D shape analysis is carried out in five steps: (i) 3D lung nodule segmentation with a deformable 3D boundary controlled by a new prior visual appearance model; (ii) 3D Delaunay triangulation to construct a 3D mesh model of the segmented lung nodule surface; (iii) mapping this model to the unit sphere; (iv) computing the SHs for the surface; and (v) determining the number of the SHs to delineate the lung nodule. We describe the lung nodule shape complexity with a new shape index, the estimated number of the SHs, and use it for the K-nearest classification into malignant and benign lung nodules. Preliminary experiments on 327 lung nodules (153 malignant and 174 benign) resulted in a classification accuracy of 93.6%, showing that the proposed method is a promising supplement to current technologies for the early diagnosis of lung cancer.

  1. 3D shape analysis for early diagnosis of malignant lung nodules.

    PubMed

    El-Bazl, Ayman; Nitzken, Matthew; Khalifa, Fahmi; Elnakib, Ahmed; Gimel'farb, Georgy; Falk, Robert; El-Ghar, Mohammed Abo

    2011-01-01

    An alternative method for diagnosing malignant lung nodules by their shape rather than conventional growth rate is proposed. The 3D surfaces of the detected lung nodules are delineated by spherical harmonic analysis, which represents a 3D surface of the lung nodule supported by the unit sphere with a linear combination of special basis functions, called spherical harmonics (SHs). The proposed 3D shape analysis is carried out in five steps: (i) 3D lung nodule segmentation with a deformable 3D boundary controlled by two probabilistic visual appearance models (the learned prior and the estimated current appearance one); (ii) 3D Delaunay triangulation to construct a 3D mesh model of the segmented lung nodule surface; (iii) mapping this model to the unit sphere; (iv) computing the SHs for the surface, and (v) determining the number of the SHs to delineate the lung nodule. We describe the lung nodule shape complexity with a new shape index, the estimated number of the SHs, and use it for the K-nearest classification to distinguish malignant and benign lung nodules. Preliminary experiments on 327 lung nodules (153 malignant and 174 benign) resulted in the 93.6% correct classification (for the 95% confidence interval), showing that the proposed method is a promising supplement to current technologies for the early diagnosis of lung cancer.

  2. Classification and quantification of pore shapes in sandstone reservoir rocks with 3-D X-ray micro-computed tomography

    NASA Astrophysics Data System (ADS)

    Schmitt, M.; Halisch, M.; Müller, C.; Fernandes, C. P.

    2015-12-01

    Recent years have seen a growing interest in the characterization of the pore morphologies of reservoir rocks and how the spatial organization of pore traits affects the macro behaviour of rock-fluid systems. With the availability of 3-D high-resolution imaging (e.g. μ-CT), the detailed quantification of particle shapes has been facilitated by progress in computer science. Here, we show how the shapes of irregular rock particles (pores) can be classified and quantified based on binary 3-D images. The methodology requires the measurement of basic 3-D particle descriptors and a shape classification that involves the similarity of artificial objects, which is based on main pore network detachments and 3-D sample sizes. The results were validated for three sandstones (S1, S2 and S3) from distinct reservoirs, and most of the pore shapes were found to be plate- and cube-like. Furthermore, this study generalizes a practical way to correlate specific particle shapes, such as rods, blades, cuboids, plates and cubes, to characterize asymmetric particles of any material type with 3-D image analysis.

  3. 3D Left Ventricular Strain from Unwrapped Harmonic Phase Measurements

    PubMed Central

    Venkatesh, Bharath Ambale; Gupta, Himanshu; Lloyd, Steven G.; ‘Italia, Louis Dell; Denney, Thomas S.

    2010-01-01

    Purpose To validate a method for measuring 3D left ventricular (LV) strain from phase-unwrapped harmonic phase (HARP) images derived from tagged cardiac magnetic resonance imaging (MRI). Materials and Methods A set of 40 human subjects were imaged with tagged MRI. In each study HARP phase was computed and unwrapped in each short-axis and long-axis image. Inconsistencies in unwrapped phase were resolved using branch cuts manually placed with a graphical user interface. 3D strain maps were computed for all imaged timeframes in each study. The strain from unwrapped phase (SUP) and displacements were compared to those estimated by a feature-based (FB) technique and a HARP technique. Results 3D strain was computed in each timeframe through systole and mid diastole in approximately 30 minutes per study. The standard deviation of the difference between strains measured by the FB and the SUP methods was less than 5% of the average of the strains from the two methods. The correlation between peak circumferential strain measured using the SUP and HARP techniques was over 83%. Conclusion The SUP technique can reconstruct full 3-D strain maps from tagged MR images through the cardiac cycle in a reasonable amount of time and user interaction compared to other 3D analysis methods. PMID:20373429

  4. Shape Analysis of 3D Head Scan Data for U.S. Respirator Users

    NASA Astrophysics Data System (ADS)

    Zhuang, Ziqing; Slice, DennisE; Benson, Stacey; Lynch, Stephanie; Viscusi, DennisJ

    2010-12-01

    In 2003, the National Institute for Occupational Safety and Health (NIOSH) conducted a head-and-face anthropometric survey of diverse, civilian respirator users. Of the 3,997 subjects measured using traditional anthropometric techniques, surface scans and 26 three-dimensional (3D) landmark locations were collected for 947 subjects. The objective of this study was to report the size and shape variation of the survey participants using the 3D data. Generalized Procrustes Analysis (GPA) was conducted to standardize configurations of landmarks associated with individuals into a common coordinate system. The superimposed coordinates for each individual were used as commensurate variables that describe individual shape and were analyzed using Principal Component Analysis (PCA) to identify population variation. The first four principal components (PC) account for 49% of the total sample variation. The first PC indicates that overall size is an important component of facial variability. The second PC accounts for long and narrow or short and wide faces. Longer narrow orbits versus shorter wider orbits can be described by PC3, and PC4 represents variation in the degree of ortho/prognathism. Geometric Morphometrics provides a detailed and interpretable assessment of morphological variation that may be useful in assessing respirators and devising new test and certification standards.

  5. The numerical measure of symmetry for 3D stick creatures.

    PubMed

    Jaśkowski, Wojciech; Komosinski, Maciej

    2008-01-01

    This work introduces a numerical, continuous measure of symmetry for 3D stick creatures and solid 3D objects. Background information about the property of symmetry is provided, and motivations for developing a symmetry measure are described. Three approaches are mentioned, and two of them are presented in detail using formal mathematical language. The best approach is used to sort a set of creatures according to their symmetry. Experiments with a mixed set of 84 individuals originating from both human design and evolution are performed to examine symmetry within these two sources, and to determine if human designers and evolutionary processes prefer symmetry or asymmetry.

  6. A 3-D measurement system using object-oriented FORTH

    SciTech Connect

    Butterfield, K.B.

    1989-01-01

    Discussed is a system for storing 3-D measurements of points that relates the coordinate system of the measurement device to the global coordinate system. The program described here used object-oriented FORTH to store the measured points as sons of the measuring device location. Conversion of local coordinates to absolute coordinates is performed by passing messages to the point objects. Modifications to the object-oriented FORTH system are also described. 1 ref.

  7. Robust Detection of Round Shaped Pits Lying on 3D Meshes: Application to Impact Crater Recognition

    NASA Astrophysics Data System (ADS)

    Schmidt, Martin-Pierre; Muscato, Jennifer; Viseur, Sophie; Jorda, Laurent; Bouley, Sylvain; Mari, Jean-Luc

    2015-04-01

    Most celestial bodies display impacts of collisions with asteroids and meteoroids. These traces are called craters. The possibility of observing and identifying these craters and their characteristics (radius, depth and morphology) is the only method available to measure the age of different units at the surface of the body, which in turn allows to constrain its conditions of formation. Interplanetary space probes always carry at least one imaging instrument on board. The visible images of the target are used to reconstruct high-resolution 3D models of its surface as a cloud of points in the case of multi-image dense stereo, or as a triangular mesh in the case of stereo and shape-from-shading. The goal of this work is to develop a methodology to automatically detect the craters lying on these 3D models. The robust extraction of feature areas on surface objects embedded in 3D, like circular pits, is a challenging problem. Classical approaches generally rely on image processing and template matching on a 2D flat projection of the 3D object (i.e.: a high-resolution photograph). In this work, we propose a full-3D method that mainly relies on curvature analysis. Mean and Gaussian curvatures are estimated on the surface. They are used to label vertices that belong to concave parts corresponding to specific pits on the surface. The surface is thus transformed into binary map distinguishing potential crater features to other types of features. Centers are located in the targeted surface regions, corresponding to potential crater features. Concentric rings are then built around the found centers. They consist in circular closed lines exclusively composed of edges of the initial mesh. The first built ring represents the nearest vertex neighborhood of the found center. The ring is then optimally expanded using a circularity constrain and the curvature values of the ring vertices. This method has been tested on a 3D model of the asteroid Lutetia observed by the ROSETTA (ESA

  8. Manifold learning for shape guided segmentation of cardiac boundaries: application to 3D+t cardiac MRI.

    PubMed

    Eslami, Abouzar; Yigitsoy, Mehmet; Navab, Nassir

    2011-01-01

    In this paper we propose a new method for shape guided segmentation of cardiac boundaries based on manifold learning of the shapes represented by the phase field approximation of the Mumford-Shah functional. A novel distance is defined to measure the similarity of shapes without requiring deformable registration. Cardiac motion is compensated and phases are mapped into one reference phase, that is the end of diastole, to avoid time warping and synchronization at all cardiac phases. Non-linear embedding of these 3D shapes extracts the manifold of the inter-subject variation of the heart shape to be used for guiding the segmentation for a new subject. For validation the method is applied to a comprehensive dataset of 3D+t cardiac Cine MRI from normal subjects and patients.

  9. Simultaneous acquisition of 3D shape and deformation by combination of interferometric and correlation-based laser speckle metrology

    PubMed Central

    Dekiff, Markus; Berssenbrügge, Philipp; Kemper, Björn; Denz, Cornelia; Dirksen, Dieter

    2015-01-01

    A metrology system combining three laser speckle measurement techniques for simultaneous determination of 3D shape and micro- and macroscopic deformations is presented. While microscopic deformations are determined by a combination of Digital Holographic Interferometry (DHI) and Digital Speckle Photography (DSP), macroscopic 3D shape, position and deformation are retrieved by photogrammetry based on digital image correlation of a projected laser speckle pattern. The photogrammetrically obtained data extend the measurement range of the DHI-DSP system and also increase the accuracy of the calculation of the sensitivity vector. Furthermore, a precise assignment of microscopic displacements to the object’s macroscopic shape for enhanced visualization is achieved. The approach allows for fast measurements with a simple setup. Key parameters of the system are optimized, and its precision and measurement range are demonstrated. As application examples, the deformation of a mandible model and the shrinkage of dental impression material are measured. PMID:26713197

  10. Simultaneous acquisition of 3D shape and deformation by combination of interferometric and correlation-based laser speckle metrology.

    PubMed

    Dekiff, Markus; Berssenbrügge, Philipp; Kemper, Björn; Denz, Cornelia; Dirksen, Dieter

    2015-12-01

    A metrology system combining three laser speckle measurement techniques for simultaneous determination of 3D shape and micro- and macroscopic deformations is presented. While microscopic deformations are determined by a combination of Digital Holographic Interferometry (DHI) and Digital Speckle Photography (DSP), macroscopic 3D shape, position and deformation are retrieved by photogrammetry based on digital image correlation of a projected laser speckle pattern. The photogrammetrically obtained data extend the measurement range of the DHI-DSP system and also increase the accuracy of the calculation of the sensitivity vector. Furthermore, a precise assignment of microscopic displacements to the object's macroscopic shape for enhanced visualization is achieved. The approach allows for fast measurements with a simple setup. Key parameters of the system are optimized, and its precision and measurement range are demonstrated. As application examples, the deformation of a mandible model and the shrinkage of dental impression material are measured.

  11. 3-D measuring of engine camshaft based on machine vision

    NASA Astrophysics Data System (ADS)

    Qiu, Jianxin; Tan, Liang; Xu, Xiaodong

    2008-12-01

    The non-touch 3D measuring based on machine vision is introduced into camshaft precise measuring. Currently, because CCD 3-dimensional measuring can't meet requirements for camshaft's measuring precision, it's necessary to improve its measuring precision. In this paper, we put forward a method to improve the measuring method. A Multi-Character Match method based on the Polygonal Non-regular model is advanced with the theory of Corner Extraction and Corner Matching .This method has solved the problem of the matching difficulty and a low precision. In the measuring process, the use of the Coded marked Point method and Self-Character Match method can bring on this problem. The 3D measuring experiment on camshaft, which based on the Multi-Character Match method of the Polygonal Non-regular model, proves that the normal average measuring precision is increased to a new level less than 0.04mm in the point-clouds photo merge. This measuring method can effectively increase the 3D measuring precision of the binocular CCD.

  12. Measuring Knowledge Acquisition in 3D Virtual Learning Environments.

    PubMed

    Nunes, Eunice P dos Santos; Roque, Licínio G; Nunes, Fatima de Lourdes dos Santos

    2016-01-01

    Virtual environments can contribute to the effective learning of various subjects for people of all ages. Consequently, they assist in reducing the cost of maintaining physical structures of teaching, such as laboratories and classrooms. However, the measurement of how learners acquire knowledge in such environments is still incipient in the literature. This article presents a method to evaluate the knowledge acquisition in 3D virtual learning environments (3D VLEs) by using the learner's interactions in the VLE. Three experiments were conducted that demonstrate the viability of using this method and its computational implementation. The results suggest that it is possible to automatically assess learning in predetermined contexts and that some types of user interactions in 3D VLEs are correlated with the user's learning differential.

  13. Measuring the Stellar Halo Velocity Anisotropy With 3D Kinematics

    NASA Astrophysics Data System (ADS)

    Cunningham, Emily C.; Deason, Alis J.; Guhathakurta, Puragra; Rockosi, Constance M.; van der Marel, Roeland P.; Sohn, S. Tony

    2016-08-01

    We present the first measurement of the anisotropy parameter β using 3D kinematic information outside of the solar neighborhood. Our sample consists of 13 Milky Way halo stars with measured proper motions and radial velocities in the line of sight of M31. Proper motions were measured using deep, multi-epoch HST imaging, and radial velocities were measured from Keck II/DEIMOS spectra. We measure β = -0.3-0.9 +0.4, which is consistent with isotropy, and inconsistent with measurements in the solar neighborhood. We suggest that this may be the kinematic signature of a relatively early, massive accretion event, or perhaps several such events.

  14. Shape-Controlled, Self-Wrapped Carbon Nanotube 3D Electronics.

    PubMed

    Wang, Huiliang; Wang, Yanming; Tee, Benjamin C-K; Kim, Kwanpyo; Lopez, Jeffrey; Cai, Wei; Bao, Zhenan

    2015-09-01

    The mechanical flexibility and structural softness of ultrathin devices based on organic thin films and low-dimensional nanomaterials have enabled a wide range of applications including flexible display, artificial skin, and health monitoring devices. However, both living systems and inanimate systems that are encountered in daily lives are all 3D. It is therefore desirable to either create freestanding electronics in a 3D form or to incorporate electronics onto 3D objects. Here, a technique is reported to utilize shape-memory polymers together with carbon nanotube flexible electronics to achieve this goal. Temperature-assisted shape control of these freestanding electronics in a programmable manner is demonstrated, with theoretical analysis for understanding the shape evolution. The shape control process can be executed with prepatterned heaters, desirable for 3D shape formation in an enclosed environment. The incorporation of carbon nanotube transistors, gas sensors, temperature sensors, and memory devices that are capable of self-wrapping onto any irregular shaped-objects without degradations in device performance is demonstrated.

  15. Modeling the transparent shape memory gels by 3D printer Acculas

    NASA Astrophysics Data System (ADS)

    Kumagai, Hiroaki; Arai, Masanori; Gong, Jin; Sakai, Kazuyuki; Kawakami, Masaru; Furukawa, Hidemitsu

    2016-04-01

    In our group, highly transparent shape memory gels were successfully synthesized for the first time in the world. These gels have the high strength of 3MPs modulus even with the water content of 40wt% water and high transparency. We consider that these highly transparent and high strength gels can be applied to the optical devices such as intraocular-lenses and optical fibers. In previous research by our group, attempts were made to manufacture the gel intraocular-lenses using highly transparent shape memory gels. However, it was too difficult to print the intraocular-lens finely enough. Here, we focus on a 3D printer, which can produce objects of irregular shape. 3D printers generally we fused deposition modeling (FDM), a stereo lithography apparatus (SLA) and selective laser sintering (SLS). Because highly transparent shape memory gels are gelled by light irradiation, we used 3D printer with stereo lithography apparatus (SLA). In this study, we found the refractive index of highly transparent shape memory gels depend on monomer concentration, and does not depend on the cross-linker or initiator concentration. Furthermore, the cross-linker and initiator concentration can change the gelation progression rate. As a result, we have developed highly transparent shape memory gels, which can have a range of refractive indexes, and we defined the optimal conditions that can be modeling in the 3D printer by changing the cross-linker and initiator concentration. With these discoveries we were able to produce a gel intraocular-lens replica.

  16. 3D optical measuring technologies for dimensional inspection

    NASA Astrophysics Data System (ADS)

    Chugui, Yu V.

    2005-01-01

    The results of the R & D activity of TDI SIE SB RAS in the field of the 3D optical measuring technologies and systems for noncontact 3D optical dimensional inspection applied to atomic and railway industry safety problems are presented. This activity includes investigations of diffraction phenomena on some 3D objects, using the original constructive calculation method, development of hole inspection method on the base of diffractive optical elements. Ensuring the safety of nuclear reactors and running trains as well as their high exploitation reliability takes a noncontact inspection of geometrical parameters of their components. For this tasks we have developed methods and produced the technical vision measuring systems LMM, CONTROL, PROFILE, and technologies for non-contact 3D dimensional inspection of grid spacers and fuel elements for the nuclear reactor VVER-1000 and VVER-440, as well as automatic laser diagnostic system COMPLEX for noncontact inspection of geometrical parameters of running freight car wheel pairs. The performances of these systems and the results of the industrial testing at atomic and railway companies are presented.

  17. 3D optical measuring technologies and systems for industrial applications

    NASA Astrophysics Data System (ADS)

    Chugui, Yu. V.

    2005-06-01

    The results of the R & D activity of TDI SIE SB RAS in the field of the 3D optical measuring technologies and systems for noncontact 3D optical dimensional inspection applied to atomic and railway industry safety problems are presented. This activity includes investigations of diffraction phenomena on some 3D objects, using the original constructive calculation method, development of hole inspection method on the base of diffractive optical elements. Ensuring the safety of nuclear reactors and running trains as well as their high exploitation reliability requires a 100 % noncontact precise inspection of geometrical parameters of their components. To solve this problem we have developed methods and produced the technical vision measuring systems LMM, CONTROL, RADAR, and technologies for noncontact 3D dimensional inspection of grid spacers and fuel elements for the nuclear reactor VVER-1000 and VVER-440, as well as automatic laser diagnostic COMPLEX for noncontact inspection of geometric parameters of running freight car wheel pairs. The performances of these systems and the results of industrial testing are presented and discussed. The created devices are in pilot operation at Atomic and Railway Companies.

  18. High-speed 3D digital image correlation vibration measurement: Recent advancements and noted limitations

    NASA Astrophysics Data System (ADS)

    Beberniss, Timothy J.; Ehrhardt, David A.

    2017-03-01

    A review of the extensive studies on the feasibility and practicality of utilizing high-speed 3 dimensional digital image correlation (3D-DIC) for various random vibration measurement applications is presented. Demonstrated capabilities include finite element model updating utilizing full-field 3D-DIC static displacements, modal survey natural frequencies, damping, and mode shape results from 3D-DIC are baselined against laser Doppler vibrometry (LDV), a comparison between foil strain gage and 3D-DIC strain, and finally the unique application to a high-speed wind tunnel fluid-structure interaction study. Results show good agreement between 3D-DIC and more traditional vibration measurement techniques. Unfortunately, 3D-DIC vibration measurement is not without its limitations, which are also identified and explored in this study. The out-of-plane sensitivity required for vibration measurement for 3D-DIC is orders of magnitude less than LDV making higher frequency displacements difficult to sense. Furthermore, the digital cameras used to capture the DIC images have no filter to eliminate temporal aliasing of the digitized signal. Ultimately DIC is demonstrated as a valid alternative means to measure structural vibrations while one unique application achieves success where more traditional methods would fail.

  19. Shape and 3D acoustically induced vibrations of the human eardrum characterized by digital holography

    NASA Astrophysics Data System (ADS)

    Khaleghi, Morteza; Furlong, Cosme; Cheng, Jeffrey Tao; Rosowski, John J.

    2014-07-01

    The eardrum or Tympanic Membrane (TM) transfers acoustic energy from the ear canal (at the external ear) into mechanical motions of the ossicles (at the middle ear). The acousto-mechanical-transformer behavior of the TM is determined by its shape and mechanical properties. For a better understanding of hearing mysteries, full-field-of-view techniques are required to quantify shape, nanometer-scale sound-induced displacement, and mechanical properties of the TM in 3D. In this paper, full-field-of-view, three-dimensional shape and sound-induced displacement of the surface of the TM are obtained by the methods of multiple wavelengths and multiple sensitivity vectors with lensless digital holography. Using our developed digital holographic systems, unique 3D information such as, shape (with micrometer resolution), 3D acoustically-induced displacement (with nanometer resolution), full strain tensor (with nano-strain resolution), 3D phase of motion, and 3D directional cosines of the displacement vectors can be obtained in full-field-ofview with a spatial resolution of about 3 million points on the surface of the TM and a temporal resolution of 15 Hz.

  20. Measuring visual discomfort associated with 3D displays

    NASA Astrophysics Data System (ADS)

    Lambooij, M.; Fortuin, M.; Ijsselsteijn, W. A.; Heynderickx, I.

    2009-02-01

    Some people report visual discomfort when watching 3D displays. For both the objective measurement of visual fatigue and the subjective measurement of visual discomfort, we would like to arrive at general indicators that are easy to apply in perception experiments. Previous research yielded contradictory results concerning such indicators. We hypothesize two potential causes for this: 1) not all clinical tests are equally appropriate to evaluate the effect of stereoscopic viewing on visual fatigue, and 2) there is a natural variation in susceptibility to visual fatigue amongst people with normal vision. To verify these hypotheses, we designed an experiment, consisting of two parts. Firstly, an optometric screening was used to differentiate participants in susceptibility to visual fatigue. Secondly, in a 2×2 within-subjects design (2D vs 3D and two-view vs nine-view display), a questionnaire and eight optometric tests (i.e. binocular acuity, fixation disparity with and without fusion lock, heterophoria, convergent and divergent fusion, vergence facility and accommodation response) were administered before and immediately after a reading task. Results revealed that participants found to be more susceptible to visual fatigue during screening showed a clinically meaningful increase in fusion amplitude after having viewed 3D stimuli. Two questionnaire items (i.e., pain and irritation) were significantly affected by the participants' susceptibility, while two other items (i.e., double vision and sharpness) were scored differently between 2D and 3D for all participants. Our results suggest that a combination of fusion range measurements and self-report is appropriate for evaluating visual fatigue related to 3D displays.

  1. Experimental and Numerical Investigation of Forging Process to Reproduce a 3D Aluminium Foam Complex Shape

    NASA Astrophysics Data System (ADS)

    Filice, Luigino; Gagliardi, Francesco; Shivpuri, Rajiv; Umbrello, Domenico

    2007-05-01

    Metallic foams represent one of the most exciting materials introduced in the manufacturing scenario in the last years. In the study here addressed, the experimental and numerical investigations on the forging process of a simple foam billet shaped into complex sculptured parts were carried out. In particular, the deformation behavior of metallic foams and the development of density gradients were investigated through a series of experimental forging tests in order to produce a selected portion of a hip prosthesis. The human bone replacement was chosen as case study due to its industrial demand and for its particular 3D complex shape. A finite element code (Deform 3D®) was utilized for modeling the foam behavior during the forging process and an accurate material rheology description was used based on a porous material model which includes the measured local density. Once the effectiveness of the utilized Finite Element model was verified through the comparison with the experimental evidences, a numerical study of the influence of the foam density was investigated. The obtained numerical results shown as the initial billet density plays an important role on the prediction of the final shape, the optimization of the flash as well as the estimation of the punch load.

  2. Flying triangulation - A motion-robust optical 3D sensor for the real-time shape acquisition of complex objects

    NASA Astrophysics Data System (ADS)

    Willomitzer, Florian; Ettl, Svenja; Arold, Oliver; Häusler, Gerd

    2013-05-01

    The three-dimensional shape acquisition of objects has become more and more important in the last years. Up to now, there are several well-established methods which already yield impressive results. However, even under quite common conditions like object movement or a complex shaping, most methods become unsatisfying. Thus, the 3D shape acquisition is still a difficult and non-trivial task. We present our measurement principle "Flying Triangulation" which enables a motion-robust 3D acquisition of complex-shaped object surfaces by a freely movable handheld sensor. Since "Flying Triangulation" is scalable, a whole sensor-zoo for different object sizes is presented. Concluding, an overview of current and future fields of investigation is given.

  3. Pavement cracking measurements using 3D laser-scan images

    NASA Astrophysics Data System (ADS)

    Ouyang, W.; Xu, B.

    2013-10-01

    Pavement condition surveying is vital for pavement maintenance programs that ensure ride quality and traffic safety. This paper first introduces an automated pavement inspection system which uses a three-dimensional (3D) camera and a structured laser light to acquire dense transverse profiles of a pavement lane surface when it carries a moving vehicle. After the calibration, the 3D system can yield a depth resolution of 0.5 mm and a transverse resolution of 1.56 mm pixel-1 at 1.4 m camera height from the ground. The scanning rate of the camera can be set to its maximum at 5000 lines s-1, allowing the density of scanned profiles to vary with the vehicle's speed. The paper then illustrates the algorithms that utilize 3D information to detect pavement distress, such as transverse, longitudinal and alligator cracking, and presents the field tests on the system's repeatability when scanning a sample pavement in multiple runs at the same vehicle speed, at different vehicle speeds and under different weather conditions. The results show that this dedicated 3D system can capture accurate pavement images that detail surface distress, and obtain consistent crack measurements in repeated tests and under different driving and lighting conditions.

  4. An endoscope designed with 3D measurement functions

    NASA Astrophysics Data System (ADS)

    Zhu, Qi-hai; Li, Zheng-lin; Wang, Li-qiang; Zhao, Chang-Ming; Xu, Peng

    2016-10-01

    The endoscopic system is widely used in medical and industrial areas, but how to realize the high-precision three-dimensional measurement in the limited space scale still faces many challenges. A method based on the four-step phase-shifting structured light illumination is proposed in this paper for endoscopic 3D measurements. Structured light of which the adjacent phase shift is 90 degrees is generated by the different parts of the time-sharing lighting stripe grating of the optical fiber bundle; CMOS camera is used to collect four structured light images with the phase shift. Finally, the method of four-step phase-shifting is used to demodulate 3D information from the images, and a relative measurement accuracy of 95% within the range of 15-200mm can be obtained. The endoscope with a field of view of 90 degrees, a image resolution of 1280 * 800 and 3D depth calculation time of 0.2 seconds has advantages of simple structure, large field of view, high accuracy and good real-time measurement.

  5. Electro-bending characterization of adaptive 3D fiber reinforced plastics based on shape memory alloys

    NASA Astrophysics Data System (ADS)

    Ashir, Moniruddoza; Hahn, Lars; Kluge, Axel; Nocke, Andreas; Cherif, Chokri

    2016-03-01

    The industrial importance of fiber reinforced plastics (FRPs) is growing steadily in recent years, which are mostly used in different niche products, has been growing steadily in recent years. The integration of sensors and actuators in FRP is potentially valuable for creating innovative applications and therefore the market acceptance of adaptive FRP is increasing. In particular, in the field of highly stressed FRP, structural integrated systems for continuous component parts monitoring play an important role. This presented work focuses on the electro-mechanical characterization of adaptive three-dimensional (3D)FRP with integrated textile-based actuators. Here, the friction spun hybrid yarn, consisting of shape memory alloy (SMA) in wire form as core, serves as an actuator. Because of the shape memory effect, the SMA-hybrid yarn returns to its original shape upon heating that also causes the deformation of adaptive 3D FRP. In order to investigate the influences of the deformation behavior of the adaptive 3D FRP, investigations in this research are varied according to the structural parameters such as radius of curvature of the adaptive 3D FRP, fabric types and number of layers of the fabric in the composite. Results show that reproducible deformations can be realized with adaptive 3D FRP and that structural parameters have a significant impact on the deformation capability.

  6. Micro-well arrays for 3D shape control and high resolution analysis of single cells.

    PubMed

    Ochsner, Mirjam; Dusseiller, Marc R; Grandin, H Michelle; Luna-Morris, Sheila; Textor, Marcus; Vogel, Viola; Smith, Michael L

    2007-08-01

    In addition to rigidity, matrix composition, and cell shape, dimensionality is now considered an important property of the cell microenvironment which directs cell behavior. However, available tools for cell culture in two-dimensional (2D) versus three-dimensional (3D) environments are difficult to compare, and no tools exist which provide 3D shape control of single cells. We developed polydimethylsiloxane (PDMS) substrates for the culture of single cells in 3D arrays which are compatible with high-resolution microscopy. Cell adhesion was limited to within microwells by passivation of the flat upper surface through 'wet-printing' of a non-fouling polymer and backfilling of the wells with specific adhesive proteins or lipid bilayers. Endothelial cells constrained within microwells were viable, and intracellular features could be imaged with high resolution objectives. Finally, phalloidin staining of actin stress fibers showed that the cytoskeleton of cells in microwells was 3D and not limited to the cell-substrate interface. Thus, microwells can be used to produce microenvironments for large numbers of single cells with 3D shape control and can be added to a repertoire of tools which are ever more sought after for both fundamental biological studies as well as high throughput cell screening assays.

  7. Shape optimization of 3D continuum structures via force approximation techniques

    NASA Technical Reports Server (NTRS)

    Vanderplaats, Garret N.; Kodiyalam, Srinivas

    1988-01-01

    The existing need to develop methods whereby the shape design efficiency can be improved through the use of high quality approximation methods is addressed. An efficient approximation method for stress constraints in 3D shape design problems is proposed based on expanding the nodal forces in Taylor series with respect to shape variations. The significance of this new method is shown through elementary beam theory calculations and via numerical computations using 3D solid finite elements. Numerical examples including the classical cantilever beam structure and realistic automotive parts like the engine connecting rod are designed for optimum shape using the proposed method. The numerical results obtained from these methods are compared with other published results, to assess the efficiency and the convergence rate of the proposed method.

  8. 3D velocity measurement by a single camera using Doppler phase-shifting holography

    NASA Astrophysics Data System (ADS)

    Ninomiya, Nao; Kubo, Yamato; Barada, Daisuke; Kiire, Tomohiro

    2016-10-01

    In order to understand the details of the flow field in micro- and nano-fluidic devices, it is necessary to measure the 3D velocities under a microscopy. Thus, there is a strong need for the development of a new measuring technique for 3D velocity by a single camera. One solution is the use of holography, but it is well known that the accuracy in the depth direction is very poor for the commonly used in-line holography. At present, the Doppler phase-shifting holography is used for the 3D measurement of an object. This method extracts the signal of a fixed frequency caused by the Doppler beat between the object light and the reference light. It can measure the 3D shape precisely. Here, the frequency of the Doppler beat is determined by the velocity difference between the object light and the reference light. This implies that the velocity of an object can be calculated by the Doppler frequency. In this study, a Japanese 5 yen coin was traversed at a constant speed and its holography has been observed by a high-speed camera. By extracting only the first order diffraction signal at the Doppler frequency, a precise measurement of the shape and the position of a 5 yen coin has been achieved. At the same time, the longitudinal velocity of a 5 yen coin can be measured by the Doppler frequency. Furthermore, the lateral velocities are obtained by particle image velocimetry (PIV) method. A 5 yen coin has been traversed at different angles and its shapes and the 3D velocities have been measured accurately. This method can be applied to the particle flows in the micro- or nano-devices, and the 3D velocities will be measured under microscopes.

  9. 3-D Velocity Measurement of Natural Convection Using Image Processing

    NASA Astrophysics Data System (ADS)

    Shinoki, Masatoshi; Ozawa, Mamoru; Okada, Toshifumi; Kimura, Ichiro

    This paper describes quantitative three-dimensional measurement method for flow field of a rotating Rayleigh-Benard convection in a cylindrical cell heated below and cooled above. A correlation method for two-dimensional measurement was well advanced to a spatio-temporal correlation method. Erroneous vectors, often appeared in the correlation method, was successfully removed using Hopfield neural network. As a result, calculated 3-D velocity vector distribution well corresponded to the observed temperature distribution. Consequently, the simultaneous three-dimensional measurement system for temperature and flow field was developed.

  10. Classification and quantification of pore shapes in sandstone reservoir rocks with 3-D X-ray micro-computed tomography

    NASA Astrophysics Data System (ADS)

    Schmitt, Mayka; Halisch, Matthias; Müller, Cornelia; Peres Fernandes, Celso

    2016-02-01

    Recent years have seen a growing interest in the characterization of the pore morphologies of reservoir rocks and how the spatial organization of pore traits affects the macro behavior of rock-fluid systems. With the availability of 3-D high-resolution imaging, such as x-ray micro-computed tomography (µ-CT), the detailed quantification of particle shapes has been facilitated by progress in computer science. Here, we show how the shapes of irregular rock particles (pores) can be classified and quantified based on binary 3-D images. The methodology requires the measurement of basic 3-D particle descriptors (length, width, and thickness) and a shape classification that involves the similarity of artificial objects, which is based on main pore network detachments and 3-D sample sizes. Two main pore components were identified from the analyzed volumes: pore networks and residual pore ganglia. A watershed algorithm was applied to preserve the pore morphology after separating the main pore networks, which is essential for the pore shape characterization. The results were validated for three sandstones (S1, S2, and S3) from distinct reservoirs, and most of the pore shapes were found to be plate- and cube-like, ranging from 39.49 to 50.94 % and from 58.80 to 45.18 % when the Feret caliper descriptor was investigated in a 10003 voxel volume. Furthermore, this study generalizes a practical way to correlate specific particle shapes, such as rods, blades, cuboids, plates, and cubes to characterize asymmetric particles of any material type with 3-D image analysis.

  11. Shape-based 3D vascular tree extraction for perforator flaps

    NASA Astrophysics Data System (ADS)

    Wen, Quan; Gao, Jean

    2005-04-01

    Perforator flaps have been increasingly used in the past few years for trauma and reconstructive surgical cases. With the thinned perforated flaps, greater survivability and decrease in donor site morbidity have been reported. Knowledge of the 3D vascular tree will provide insight information about the dissection region, vascular territory, and fascia levels. This paper presents a scheme of shape-based 3D vascular tree reconstruction of perforator flaps for plastic surgery planning, which overcomes the deficiencies of current existing shape-based interpolation methods by applying rotation and 3D repairing. The scheme has the ability to restore the broken parts of the perforator vascular tree by using a probability-based adaptive connection point search (PACPS) algorithm with minimum human intervention. The experimental results evaluated by both synthetic and 39 harvested cadaver perforator flaps show the promise and potential of proposed scheme for plastic surgery planning.

  12. YAP is essential for tissue tension to ensure vertebrate 3D body shape.

    PubMed

    Porazinski, Sean; Wang, Huijia; Asaoka, Yoichi; Behrndt, Martin; Miyamoto, Tatsuo; Morita, Hitoshi; Hata, Shoji; Sasaki, Takashi; Krens, S F Gabriel; Osada, Yumi; Asaka, Satoshi; Momoi, Akihiro; Linton, Sarah; Miesfeld, Joel B; Link, Brian A; Senga, Takeshi; Castillo-Morales, Atahualpa; Urrutia, Araxi O; Shimizu, Nobuyoshi; Nagase, Hideaki; Matsuura, Shinya; Bagby, Stefan; Kondoh, Hisato; Nishina, Hiroshi; Heisenberg, Carl-Philipp; Furutani-Seiki, Makoto

    2015-05-14

    Vertebrates have a unique 3D body shape in which correct tissue and organ shape and alignment are essential for function. For example, vision requires the lens to be centred in the eye cup which must in turn be correctly positioned in the head. Tissue morphogenesis depends on force generation, force transmission through the tissue, and response of tissues and extracellular matrix to force. Although a century ago D'Arcy Thompson postulated that terrestrial animal body shapes are conditioned by gravity, there has been no animal model directly demonstrating how the aforementioned mechano-morphogenetic processes are coordinated to generate a body shape that withstands gravity. Here we report a unique medaka fish (Oryzias latipes) mutant, hirame (hir), which is sensitive to deformation by gravity. hir embryos display a markedly flattened body caused by mutation of YAP, a nuclear executor of Hippo signalling that regulates organ size. We show that actomyosin-mediated tissue tension is reduced in hir embryos, leading to tissue flattening and tissue misalignment, both of which contribute to body flattening. By analysing YAP function in 3D spheroids of human cells, we identify the Rho GTPase activating protein ARHGAP18 as an effector of YAP in controlling tissue tension. Together, these findings reveal a previously unrecognised function of YAP in regulating tissue shape and alignment required for proper 3D body shape. Understanding this morphogenetic function of YAP could facilitate the use of embryonic stem cells to generate complex organs requiring correct alignment of multiple tissues.

  13. Mechanical properties and shape memory effect of 3D-printed PLA-based porous scaffolds.

    PubMed

    Senatov, F S; Niaza, K V; Zadorozhnyy, M Yu; Maksimkin, A V; Kaloshkin, S D; Estrin, Y Z

    2016-04-01

    In the present work polylactide (PLA)/15wt% hydroxyapatite (HA) porous scaffolds with pre-modeled structure were obtained by 3D-printing by fused filament fabrication. Composite filament was obtained by extrusion. Mechanical properties, structural characteristics and shape memory effect (SME) were studied. Direct heating was used for activation of SME. The average pore size and porosity of the scaffolds were 700μm and 30vol%, respectively. Dispersed particles of HA acted as nucleation centers during the ordering of PLA molecular chains and formed an additional rigid fixed phase that reduced molecular mobility, which led to a shift of the onset of recovery stress growth from 53 to 57°C. A more rapid development of stresses was observed for PLA/HA composites with the maximum recovery stress of 3.0MPa at 70°C. Ceramic particles inhibited the growth of cracks during compression-heating-compression cycles when porous PLA/HA 3D-scaffolds recovered their initial shape. Shape recovery at the last cycle was about 96%. SME during heating may have resulted in "self-healing" of scaffold by narrowing the cracks. PLA/HA 3D-scaffolds were found to withstand up to three compression-heating-compression cycles without delamination. It was shown that PLA/15%HA porous scaffolds obtained by 3D-printing with shape recovery of 98% may be used as self-fitting implant for small bone defect replacement owing to SME.

  14. Biologically Inspired Model for Inference of 3D Shape from Texture

    PubMed Central

    Gomez, Olman; Neumann, Heiko

    2016-01-01

    A biologically inspired model architecture for inferring 3D shape from texture is proposed. The model is hierarchically organized into modules roughly corresponding to visual cortical areas in the ventral stream. Initial orientation selective filtering decomposes the input into low-level orientation and spatial frequency representations. Grouping of spatially anisotropic orientation responses builds sketch-like representations of surface shape. Gradients in orientation fields and subsequent integration infers local surface geometry and globally consistent 3D depth. From the distributions in orientation responses summed in frequency, an estimate of the tilt and slant of the local surface can be obtained. The model suggests how 3D shape can be inferred from texture patterns and their image appearance in a hierarchically organized processing cascade along the cortical ventral stream. The proposed model integrates oriented texture gradient information that is encoded in distributed maps of orientation-frequency representations. The texture energy gradient information is defined by changes in the grouped summed normalized orientation-frequency response activity extracted from the textured object image. This activity is integrated by directed fields to generate a 3D shape representation of a complex object with depth ordering proportional to the fields output, with higher activity denoting larger distance in relative depth away from the viewer. PMID:27649387

  15. Real-time structured light intraoral 3D measurement pipeline

    NASA Astrophysics Data System (ADS)

    Gheorghe, Radu; Tchouprakov, Andrei; Sokolov, Roman

    2013-02-01

    Computer aided design and manufacturing (CAD/CAM) is increasingly becoming a standard feature and service provided to patients in dentist offices and denture manufacturing laboratories. Although the quality of the tools and data has slowly improved in the last years, due to various surface measurement challenges, practical, accurate, invivo, real-time 3D high quality data acquisition and processing still needs improving. Advances in GPU computational power have allowed for achieving near real-time 3D intraoral in-vivo scanning of patient's teeth. We explore in this paper, from a real-time perspective, a hardware-software-GPU solution that addresses all the requirements mentioned before. Moreover we exemplify and quantify the hard and soft deadlines required by such a system and illustrate how they are supported in our implementation.

  16. 3D beam shape estimation based on distributed coaxial cable interferometric sensor

    NASA Astrophysics Data System (ADS)

    Cheng, Baokai; Zhu, Wenge; Liu, Jie; Yuan, Lei; Xiao, Hai

    2017-03-01

    We present a coaxial cable interferometer based distributed sensing system for 3D beam shape estimation. By making a series of reflectors on a coaxial cable, multiple Fabry–Perot cavities are created on it. Two cables are mounted on the beam at proper locations, and a vector network analyzer (VNA) is connected to them to obtain the complex reflection signal, which is used to calculate the strain distribution of the beam in horizontal and vertical planes. With 6 GHz swept bandwidth on the VNA, the spatial resolution for distributed strain measurement is 0.1 m, and the sensitivity is 3.768 MHz mε ‑1 at the interferogram dip near 3.3 GHz. Using displacement-strain transformation, the shape of the beam is reconstructed. With only two modified cables and a VNA, this system is easy to implement and manage. Comparing to optical fiber based sensor systems, the coaxial cable sensors have the advantage of large strain and robustness, making this system suitable for structure health monitoring applications.

  17. A new 3D computational model for shaped charge jet breakup

    SciTech Connect

    Zernow, L.; Chapyak, E.J.; Mosso, S.J.

    1996-09-01

    This paper reviews prior 1D and 2D axisymmetric, analytical and computational studies, as well as empirical studies of the shaped charge jet particulation problem and discusses their associated insights and problems. It proposes a new 3D computational model of the particulation process, based upon a simplified version of the observed counter-rotating, double helical surface perturbations, found on softly recovered shaped charge jet particles, from both copper and tantalum jets. This 3D approach contrasts with the random, axisymmetric surface perturbations which have previously been used, to try to infer the observed length distribution of jet particles, on the basis of the most unstable wavelength concept, which leads to the expectation of a continuous distribution of particle lengths. The 3D model, by its very nature, leads to a non-random, periodic distribution of potential initial necking loci, on alternate sides of the stretching jet. This in turn infers a potentially periodic, overlapping, multi-modal distribution of associated jet particle lengths. Since it is unlikely that all potential initial necking sites will be activated simultaneously, the 3D model also suggests that longer jet particles containing partial, but unseparated necks, should be observed fairly often. The computational analysis is in its very early stages and the problems involved in inserting the two helical grooves and in defining the initial conditions and boundary conditions for the computation will be discussed. Available initial results from the 3D computation will be discussed and interpreted.

  18. Model-based 3D human shape estimation from silhouettes for virtual fitting

    NASA Astrophysics Data System (ADS)

    Saito, Shunta; Kouchi, Makiko; Mochimaru, Masaaki; Aoki, Yoshimitsu

    2014-03-01

    We propose a model-based 3D human shape reconstruction system from two silhouettes. Firstly, we synthesize a deformable body model from 3D human shape database consists of a hundred whole body mesh models. Each mesh model is homologous, so that it has the same topology and same number of vertices among all models. We perform principal component analysis (PCA) on the database and synthesize an Active Shape Model (ASM). ASM allows changing the body type of the model with a few parameters. The pose changing of our model can be achieved by reconstructing the skeleton structures from implanted joints of the model. By applying pose changing after body type deformation, our model can represents various body types and any pose. We apply the model to the problem of 3D human shape reconstruction from front and side silhouette. Our approach is simply comparing the contours between the model's and input silhouettes', we then use only torso part contour of the model to reconstruct whole shape. We optimize the model parameters by minimizing the difference between corresponding silhouettes by using a stochastic, derivative-free non-linear optimization method, CMA-ES.

  19. Investigating the Bag-of-Words Method for 3D Shape Retrieval

    NASA Astrophysics Data System (ADS)

    Li, Xiaolan; Godil, Afzal

    2010-12-01

    This paper investigates the capabilities of the Bag-of-Words (BWs) method in the 3D shape retrieval field. The contributions of this paper are (1) the 3D shape retrieval task is categorized from different points of view: specific versus generic, partial-to-global retrieval (PGR) versus global-to-global retrieval (GGR), and articulated versus nonarticulated (2) the spatial information, represented as concentric spheres, is integrated into the framework to improve the discriminative ability (3) the analysis of the experimental results on Purdue Engineering Benchmark (PEB) reveals that some properties of the BW approach make it perform better on the PGR task than the GGR task (4) the BW approach is evaluated on nonarticulated database PEB and articulated database McGill Shape Benchmark (MSB) and compared to other methods.

  20. Measuring large aspherics using a commercially available 3D-coordinate measuring machine

    NASA Astrophysics Data System (ADS)

    Otto, Wolfgang; Matthes, Axel; Schiehle, Heinz

    2000-07-01

    A CNC-controlled precision measuring machine is a very powerful tool in the optical shop not only to determine the surface figure, but also to qualify the radius of curvature and conic constant of aspherics. We used a commercially available 3D-coordinate measuring machine (CMM, ZEISS UPMC 850 CARAT S-ACC) to measure the shape of the GEMINI 1-m convex secondary mirrors at different lapping and polishing stages. To determine the measuring accuracy we compared the mechanical measurements with the results achieved by means of an interferometrical test setup. The data obtained in an early stage of polishing were evaluated in Zernike polynomials which show a very good agreement. The deviation concerning long wave rotational symmetrical errors was 20 nm rms, whereas the accuracy measuring of mid spatial frequency deviations was limited to about 100 nm rms.

  1. Swelling and folding as mechanisms of 3D shape formation in thin elastic sheets

    NASA Astrophysics Data System (ADS)

    Dias, Marcelo A.

    We work with two different mechanisms to generate geometric frustration on thin elastic sheets; isotropic differential growth and folding. We describe how controlled growth and prescribing folding patterns are useful tools for designing three-dimensional objects from information printed in two dimensions. The first mechanism is inspired by the possibility to control shapes by swelling polymer films, where we propose a solution for the problem of shape formation by asking the question, “what 2D metric should be prescribed to achieve a given 3D shape?”', namely the reverse problem. We choose two different types of initial configurations of sheets, disk-like with one boundary and annular with two boundaries. We demonstrate our technique by choosing four examples of 3D axisymmetric shapes and finding the respective swelling factors to achieve the desired shape. Second, we present a mechanical model for a single curved fold that explains both the buckled shape of a closed fold and its mechanical stiffness. The buckling arises from the geometrical frustration between the prescribed crease angle and the bending energy of the sheet away from the crease. This frustration increases as the sheet's area increases. Stiff folds result in creases with constant space curvature while softer folds inherit the broken symmetry of the buckled shape. We extend the application of our numerical model to show the potential to study multiple fold structures.

  2. PRESAGE 3D dosimetry accurately measures Gamma Knife output factors

    NASA Astrophysics Data System (ADS)

    Klawikowski, Slade J.; Yang, James N.; Adamovics, John; Ibbott, Geoffrey S.

    2014-12-01

    Small-field output factor measurements are traditionally very difficult because of steep dose gradients, loss of lateral electronic equilibrium, and dose volume averaging in finitely sized detectors. Three-dimensional (3D) dosimetry is ideal for measuring small output factors and avoids many of these potential challenges of point and 2D detectors. PRESAGE 3D polymer dosimeters were used to measure the output factors for the 4 mm and 8 mm collimators of the Leksell Perfexion Gamma Knife radiosurgery treatment system. Discrepancies between the planned and measured distance between shot centers were also investigated. A Gamma Knife head frame was mounted onto an anthropomorphic head phantom. Special inserts were machined to hold 60 mm diameter, 70 mm tall cylindrical PRESAGE dosimeters. The phantom was irradiated with one 16 mm shot and either one 4 mm or one 8 mm shot, to a prescribed dose of either 3 Gy or 4 Gy to the 50% isodose line. The two shots were spaced between 30 mm and 60 mm apart and aligned along the central axis of the cylinder. The Presage dosimeters were measured using the DMOS-RPC optical CT scanning system. Five independent 4 mm output factor measurements fell within 2% of the manufacturer’s Monte Carlo simulation-derived nominal value, as did two independent 8 mm output factor measurements. The measured distances between shot centers varied by ±0.8 mm with respect to the planned shot displacements. On the basis of these results, we conclude that PRESAGE dosimetry is excellently suited to quantify the difficult-to-measure Gamma Knife output factors.

  3. 3D measurement of absolute radiation dose in grid therapy

    NASA Astrophysics Data System (ADS)

    Trapp, J. V.; Warrington, A. P.; Partridge, M.; Philps, A.; Leach, M. O.; Webb, S.

    2004-01-01

    Spatially fractionated radiotherapy through a grid is a concept which has a long history and was routinely used in orthovoltage radiation therapy in the middle of last century to minimize damage to the skin and subcutaneous tissue. With the advent of megavoltage radiotherapy and its skin sparing effects the use of grids in radiotherapy declined in the 1970s. However there has recently been a revival of the technique for use in palliative treatments with a single fraction of 10 to 20 Gy. In this work the absolute 3D dose distribution in a grid irradiation is measured for photons using a combination of film and gel dosimetry.

  4. Sinusoidal phase modulating interferometry system for 3D profile measurement

    NASA Astrophysics Data System (ADS)

    En, Bo; Fa-jie, Duan; Chang-rong, Lv; Fu-kai, Zhang; Fan, Feng

    2014-07-01

    We describe a fiber-optic sinusoidal phase modulating (SPM) interferometer for three-dimensional (3D) profilometry, which is insensitive to external disturbances such as mechanical vibration and temperature fluctuation. Sinusoidal phase modulation is created by modulating the drive voltage of the piezoelectric transducer (PZT) with a sinusoidal wave. The external disturbances that cause phase drift in the interference signal and decrease measuring accuracy are effectively eliminated by building a closed-loop feedback system. The phase stability can be measured with a precision of 2.75 mrad, and the external disturbances can be reduced to 53.43 mrad for the phase of fringe patterns. By measuring the dynamic deformation of the rubber membrane, the RMSE is about 0.018 mm, and a single measurement takes less than 250 ms. The feasibility for real-time application has been verified.

  5. 3D low-beta magnetized plasma equilibria from external shaping

    NASA Astrophysics Data System (ADS)

    Hassam, A.; Tenbarge, J.; Landreman, M.; Dorland, W.; Sengupta, W.

    2016-10-01

    A 3D nonlinear dissipative MHD code is in development to allow relaxation to low-beta MHD equilibrium inside a shaped 3D conducting boundary with prescribed conserved axial magnetic flux and no external current. Formation of magnetic islands is expected. Heat sources would be eventually introduced to allow the possibility of non-stationary convection depending on the stability properties of the accessible MHD equilibria. The initial development will be done using the code UMHD. The initial emphasis will be on recovering expected physics in simpler 3D geometries. A primary objective is to minimize numerical boundary noise. In particular, codes which specify the normal magnetic field B.n on bounding surfaces are prone to noise generation. We plan to shape the boundary to conform to the desired field shape so that B.n is zero on the boundary. Non-orthogonal coordinates will be chosen to effect this. We will test noise reduction within the tangential field approach. Results obtained to date support this conjecture. Initial results from simple 2D code equilibria have been verified against analytic solution of equilibria in weak shaping. Initial results also recover the expected features of the Hahm- Kulsrud island formation solution. Work supported by US DOE.

  6. A pose prediction approach based on ligand 3D shape similarity

    NASA Astrophysics Data System (ADS)

    Kumar, Ashutosh; Zhang, Kam Y. J.

    2016-06-01

    Molecular docking predicts the best pose of a ligand in the target protein binding site by sampling and scoring numerous conformations and orientations of the ligand. Failures in pose prediction are often due to either insufficient sampling or scoring function errors. To improve the accuracy of pose prediction by tackling the sampling problem, we have developed a method of pose prediction using shape similarity. It first places a ligand conformation of the highest 3D shape similarity with known crystal structure ligands into protein binding site and then refines the pose by repacking the side-chains and performing energy minimization with a Monte Carlo algorithm. We have assessed our method utilizing CSARdock 2012 and 2014 benchmark exercise datasets consisting of co-crystal structures from eight proteins. Our results revealed that ligand 3D shape similarity could substitute conformational and orientational sampling if at least one suitable co-crystal structure is available. Our method identified poses within 2 Å RMSD as the top-ranking pose for 85.7 % of the test cases. The median RMSD for our pose prediction method was found to be 0.81 Å and was better than methods performing extensive conformational and orientational sampling within target protein binding sites. Furthermore, our method was better than similar methods utilizing ligand 3D shape similarity for pose prediction.

  7. Focused shape models for hip joint segmentation in 3D magnetic resonance images.

    PubMed

    Chandra, Shekhar S; Xia, Ying; Engstrom, Craig; Crozier, Stuart; Schwarz, Raphael; Fripp, Jurgen

    2014-04-01

    Deformable models incorporating shape priors have proved to be a successful approach in segmenting anatomical regions and specific structures in medical images. This paper introduces weighted shape priors for deformable models in the context of 3D magnetic resonance (MR) image segmentation of the bony elements of the human hip joint. The fully automated approach allows the focusing of the shape model energy to a priori selected anatomical structures or regions of clinical interest by preferentially ordering the shape representation (or eigen-modes) within this type of model to the highly weighted areas. This focused shape model improves accuracy of the shape constraints in those regions compared to standard approaches. The proposed method achieved femoral head and acetabular bone segmentation mean absolute surface distance errors of 0.55±0.18mm and 0.75±0.20mm respectively in 35 3D unilateral MR datasets from 25 subjects acquired at 3T with different limited field of views for individual bony components of the hip joint.

  8. Lead-oriented synthesis: Investigation of organolithium-mediated routes to 3-D scaffolds and 3-D shape analysis of a virtual lead-like library.

    PubMed

    Lüthy, Monique; Wheldon, Mary C; Haji-Cheteh, Chehasnah; Atobe, Masakazu; Bond, Paul S; O'Brien, Peter; Hubbard, Roderick E; Fairlamb, Ian J S

    2015-06-01

    Synthetic routes to six 3-D scaffolds containing piperazine, pyrrolidine and piperidine cores have been developed. The synthetic methodology focused on the use of N-Boc α-lithiation-trapping chemistry. Notably, suitably protected and/or functionalised medicinal chemistry building blocks were synthesised via concise, connective methodology. This represents a rare example of lead-oriented synthesis. A virtual library of 190 compounds was then enumerated from the six scaffolds. Of these, 92 compounds (48%) fit the lead-like criteria of: (i) -1⩽AlogP⩽3; (ii) 14⩽number of heavy atoms⩽26; (iii) total polar surface area⩾50Å(2). The 3-D shapes of the 190 compounds were analysed using a triangular plot of normalised principal moments of inertia (PMI). From this, 46 compounds were identified which had lead-like properties and possessed 3-D shapes in under-represented areas of pharmaceutical space. Thus, the PMI analysis of the 190 member virtual library showed that whilst scaffolds which may appear on paper to be 3-D in shape, only 24% of the compounds actually had 3-D structures in the more interesting areas of 3-D drug space.

  9. Unbiased contaminant removal for 3D galaxy power spectrum measurements

    NASA Astrophysics Data System (ADS)

    Kalus, B.; Percival, W. J.; Bacon, D. J.; Samushia, L.

    2016-11-01

    We assess and develop techniques to remove contaminants when calculating the 3D galaxy power spectrum. We separate the process into three separate stages: (i) removing the contaminant signal, (ii) estimating the uncontaminated cosmological power spectrum and (iii) debiasing the resulting estimates. For (i), we show that removing the best-fitting contaminant (mode subtraction) and setting the contaminated components of the covariance to be infinite (mode deprojection) are mathematically equivalent. For (ii), performing a quadratic maximum likelihood (QML) estimate after mode deprojection gives an optimal unbiased solution, although it requires the manipulation of large N_mode^2 matrices (Nmode being the total number of modes), which is unfeasible for recent 3D galaxy surveys. Measuring a binned average of the modes for (ii) as proposed by Feldman, Kaiser & Peacock (FKP) is faster and simpler, but is sub-optimal and gives rise to a biased solution. We present a method to debias the resulting FKP measurements that does not require any large matrix calculations. We argue that the sub-optimality of the FKP estimator compared with the QML estimator, caused by contaminants, is less severe than that commonly ignored due to the survey window.

  10. Facile 3D Metal Electrode Fabrication for Energy Applications via Inkjet Printing and Shape Memory Polymer

    NASA Astrophysics Data System (ADS)

    Roberts, R. C.; Wu, J.; Hau, N. Y.; Chang, Y. H.; Feng, S. P.; Li, D. C.

    2014-11-01

    This paper reports on a simple 3D metal electrode fabrication technique via inkjet printing onto a thermally contracting shape memory polymer (SMP) substrate. Inkjet printing allows for the direct patterning of structures from metal nanoparticle bearing liquid inks. After deposition, these inks require thermal curing steps to render a stable conductive film. By printing onto a SMP substrate, the metal nanoparticle ink can be cured and substrate shrunk simultaneously to create 3D metal microstructures, forming a large surface area topology well suited for energy applications. Polystyrene SMP shrinkage was characterized in a laboratory oven from 150-240°C, resulting in a size reduction of 1.97-2.58. Silver nanoparticle ink was patterned into electrodes, shrunk, and the topology characterized using scanning electron microscopy. Zinc-Silver Oxide microbatteries were fabricated to demonstrate the 3D electrodes compared to planar references. Characterization was performed using 10M potassium hydroxide electrolyte solution doped with zinc oxide (57g/L). After a 300s oxidation at 3Vdc, the 3D electrode battery demonstrated a 125% increased capacity over the reference cell. Reference cells degraded with longer oxidations, but the 3D electrodes were fully oxidized for 4 hours, and exhibited a capacity of 5.5mA-hr/cm2 with stable metal performance.

  11. Shaping functional nano-objects by 3D confined supramolecular assembly.

    PubMed

    Deng, Renhua; Liang, Fuxin; Li, Weikun; Liu, Shanqin; Liang, Ruijing; Cai, Mingle; Yang, Zhenzhong; Zhu, Jintao

    2013-12-20

    Nano-objects are generated through 3D confined supramolecular assembly, followed by a sequential disintegration by rupturing the hydrogen bonding. The shape of the nano-objects is tunable, ranging from nano-disc, nano-cup, to nano-toroid. The nano-objects are pH-responsive. Functional materials for example inorganic or metal nanoparticles are easily complexed onto the external surface, to extend both composition and microstructure of the nano-objects.

  12. An Effective 3D Shape Descriptor for Object Recognition with RGB-D Sensors

    PubMed Central

    Liu, Zhong; Zhao, Changchen; Wu, Xingming; Chen, Weihai

    2017-01-01

    RGB-D sensors have been widely used in various areas of computer vision and graphics. A good descriptor will effectively improve the performance of operation. This article further analyzes the recognition performance of shape features extracted from multi-modality source data using RGB-D sensors. A hybrid shape descriptor is proposed as a representation of objects for recognition. We first extracted five 2D shape features from contour-based images and five 3D shape features over point cloud data to capture the global and local shape characteristics of an object. The recognition performance was tested for category recognition and instance recognition. Experimental results show that the proposed shape descriptor outperforms several common global-to-global shape descriptors and is comparable to some partial-to-global shape descriptors that achieved the best accuracies in category and instance recognition. Contribution of partial features and computational complexity were also analyzed. The results indicate that the proposed shape features are strong cues for object recognition and can be combined with other features to boost accuracy. PMID:28245553

  13. Measurement of Laser Weld Temperatures for 3D Model Input

    SciTech Connect

    Dagel, Daryl; Grossetete, Grant; Maccallum, Danny O.

    2016-10-01

    Laser welding is a key joining process used extensively in the manufacture and assembly of critical components for several weapons systems. Sandia National Laboratories advances the understanding of the laser welding process through coupled experimentation and modeling. This report summarizes the experimental portion of the research program, which focused on measuring temperatures and thermal history of laser welds on steel plates. To increase confidence in measurement accuracy, researchers utilized multiple complementary techniques to acquire temperatures during laser welding. This data serves as input to and validation of 3D laser welding models aimed at predicting microstructure and the formation of defects and their impact on weld-joint reliability, a crucial step in rapid prototyping of weapons components.

  14. Rapid prototyping of 3D DNA-origami shapes with caDNAno

    PubMed Central

    Douglas, Shawn M.; Marblestone, Adam H.; Teerapittayanon, Surat; Vazquez, Alejandro; Church, George M.; Shih, William M.

    2009-01-01

    DNA nanotechnology exploits the programmable specificity afforded by base-pairing to produce self-assembling macromolecular objects of custom shape. For building megadalton-scale DNA nanostructures, a long ‘scaffold’ strand can be employed to template the assembly of hundreds of oligonucleotide ‘staple’ strands into a planar antiparallel array of cross-linked helices. We recently adapted this ‘scaffolded DNA origami’ method to producing 3D shapes formed as pleated layers of double helices constrained to a honeycomb lattice. However, completing the required design steps can be cumbersome and time-consuming. Here we present caDNAno, an open-source software package with a graphical user interface that aids in the design of DNA sequences for folding 3D honeycomb-pleated shapes A series of rectangular-block motifs were designed, assembled, and analyzed to identify a well-behaved motif that could serve as a building block for future studies. The use of caDNAno significantly reduces the effort required to design 3D DNA-origami structures. The software is available at http://cadnano.org/, along with example designs and video tutorials demonstrating their construction. The source code is released under the MIT license. PMID:19531737

  15. Shape representation for efficient landmark-based segmentation in 3-d.

    PubMed

    Ibragimov, Bulat; Likar, Boštjan; Pernuš, Franjo; Vrtovec, Tomaž

    2014-04-01

    In this paper, we propose a novel approach to landmark-based shape representation that is based on transportation theory, where landmarks are considered as sources and destinations, all possible landmark connections as roads, and established landmark connections as goods transported via these roads. Landmark connections, which are selectively established, are identified through their statistical properties describing the shape of the object of interest, and indicate the least costly roads for transporting goods from sources to destinations. From such a perspective, we introduce three novel shape representations that are combined with an existing landmark detection algorithm based on game theory. To reduce computational complexity, which results from the extension from 2-D to 3-D segmentation, landmark detection is augmented by a concept known in game theory as strategy dominance. The novel shape representations, game-theoretic landmark detection and strategy dominance are combined into a segmentation framework that was evaluated on 3-D computed tomography images of lumbar vertebrae and femoral heads. The best shape representation yielded symmetric surface distance of 0.75 mm and 1.11 mm, and Dice coefficient of 93.6% and 96.2% for lumbar vertebrae and femoral heads, respectively. By applying strategy dominance, the computational costs were further reduced for up to three times.

  16. Learning the 3-D structure of objects from 2-D views depends on shape, not format

    PubMed Central

    Tian, Moqian; Yamins, Daniel; Grill-Spector, Kalanit

    2016-01-01

    Humans can learn to recognize new objects just from observing example views. However, it is unknown what structural information enables this learning. To address this question, we manipulated the amount of structural information given to subjects during unsupervised learning by varying the format of the trained views. We then tested how format affected participants' ability to discriminate similar objects across views that were rotated 90° apart. We found that, after training, participants' performance increased and generalized to new views in the same format. Surprisingly, the improvement was similar across line drawings, shape from shading, and shape from shading + stereo even though the latter two formats provide richer depth information compared to line drawings. In contrast, participants' improvement was significantly lower when training used silhouettes, suggesting that silhouettes do not have enough information to generate a robust 3-D structure. To test whether the learned object representations were format-specific or format-invariant, we examined if learning novel objects from example views transfers across formats. We found that learning objects from example line drawings transferred to shape from shading and vice versa. These results have important implications for theories of object recognition because they suggest that (a) learning the 3-D structure of objects does not require rich structural cues during training as long as shape information of internal and external features is provided and (b) learning generates shape-based object representations independent of the training format. PMID:27153196

  17. Perception of 3D shape from homogeneous and nonhomogeneous surface textures

    NASA Astrophysics Data System (ADS)

    Li, Andrea; Zaidi, Qasim

    2004-06-01

    When a textured 3-dimensional surface is projected in perspective, the statistics of the texture in the image change with the shape of the surface. Most shape-from-texture models assume that these changes are due solely to the projection of non-fronto-parallel portions of the surface. This is true for developable surfaces, which are formed by bending or curving flat, textured sheets without tearing or stretching. However, for other surfaces such as those carved from solids or formed by stretched materials, the texture on the surface is generally not homogenous. If the perspective image is parsed into local Fourier spectra, we find that signature patterns of orientation flows occur at locations corresponding to specific 3-D shapes. These patterns occur generically for developable, carved and stretched surfaces and when they are visible, observers make veridical shape judgments. In contrast, frequency modulations vary systematically for different types of surfaces, and often lead to non-veridical percepts when they are caused by changes in slant (e.g. isotropically textured developable surfaces). Our results suggest that in the extraction of 3-D shape, the visual system can generically employ a limited number of neural mechanisms to extract the signature orientation flows from the image regardless of homogeneity.

  18. 3D geometry analysis of the medial meniscus--a statistical shape modeling approach.

    PubMed

    Vrancken, A C T; Crijns, S P M; Ploegmakers, M J M; O'Kane, C; van Tienen, T G; Janssen, D; Buma, P; Verdonschot, N

    2014-10-01

    The geometry-dependent functioning of the meniscus indicates that detailed knowledge on 3D meniscus geometry and its inter-subject variation is essential to design well functioning anatomically shaped meniscus replacements. Therefore, the aim of this study was to quantify 3D meniscus geometry and to determine whether variation in medial meniscus geometry is size- or shape-driven. Also we performed a cluster analysis to identify distinct morphological groups of medial menisci and assessed whether meniscal geometry is gender-dependent. A statistical shape model was created, containing the meniscus geometries of 35 subjects (20 females, 15 males) that were obtained from MR images. A principal component analysis was performed to determine the most important modes of geometry variation and the characteristic changes per principal component were evaluated. Each meniscus from the original dataset was then reconstructed as a linear combination of principal components. This allowed the comparison of male and female menisci, and a cluster analysis to determine distinct morphological meniscus groups. Of the variation in medial meniscus geometry, 53.8% was found to be due to primarily size-related differences and 29.6% due to shape differences. Shape changes were most prominent in the cross-sectional plane, rather than in the transverse plane. Significant differences between male and female menisci were only found for principal component 1, which predominantly reflected size differences. The cluster analysis resulted in four clusters, yet these clusters represented two statistically different meniscal shapes, as differences between cluster 1, 2 and 4 were only present for principal component 1. This study illustrates that differences in meniscal geometry cannot be explained by scaling only, but that different meniscal shapes can be distinguished. Functional analysis, e.g. through finite element modeling, is required to assess whether these distinct shapes actually influence

  19. 3D refractive index measurements of special optical fibers

    NASA Astrophysics Data System (ADS)

    Yan, Cheng; Huang, Su-Juan; Miao, Zhuang; Chang, Zheng; Zeng, Jun-Zhang; Wang, Ting-Yun

    2016-09-01

    A digital holographic microscopic chromatography-based approach with considerably improved accuracy, simplified configuration and performance stability is proposed to measure three dimensional refractive index of special optical fibers. Based on the approach, a measurement system is established incorporating a modified Mach-Zehnder interferometer and lab-developed supporting software for data processing. In the system, a phase projection distribution of an optical fiber is utilized to obtain an optimal digital hologram recorded by a CCD, and then an angular spectrum theory-based algorithm is adopted to extract the phase distribution information of an object wave. The rotation of the optic fiber enables the experimental measurements of multi-angle phase information. Based on the filtered back projection algorithm, a 3D refraction index of the optical fiber is thus obtained at high accuracy. To evaluate the proposed approach, both PANDA fibers and special elliptical optical fiber are considered in the system. The results measured in PANDA fibers agree well with those measured using S14 Refractive Index Profiler, which is, however, not suitable for measuring the property of a special elliptical fiber.

  20. Full-field strain measurements on turbomachinery components using 3D SLDV technology

    NASA Astrophysics Data System (ADS)

    Maguire, Martyn; Sever, Ibrahim

    2016-06-01

    This paper focuses on measurements of 3D Operating Deflection Shapes (ODSs), and subsequently, construction of full-field surface strain maps of a number of turbomachinery components. For this purpose a 3D Scanning Laser Doppler Vibrometer (SLDV) is used. The ODS measurements are performed for a large number of modes and results obtained are compared with the 1-D shapes that are most commonly measured. It is demonstrated that the 3D measurements are a significant improvement over the 1-D case in terms of independent amount of extra information they provide. This is confirmed through comparisons with FE results. Special tests are carried out to recover the full-field strain on scanned faces of the components used. Visual comparison of these measurements with FE counterparts reveal that strain maps can be successfully measured, not only for low frequency modes but also for highly complex high frequency ones. These maps are measured with different levels of input force to assess the linearity of strain results to varying response amplitudes. Lessons learnt and observations made are summarised in concluding remarks and the scope of future work to take this study into the production environment is discussed. This study constitutes a unique comprehensive investigation into full-field strain measurements using real application hardware and a large frequency range.

  1. Open-GL-based stereo system for 3D measurements

    NASA Astrophysics Data System (ADS)

    Boochs, Frank; Gehrhoff, Anja; Neifer, Markus

    2000-05-01

    A stereo system designed and used for the measurement of 3D- coordinates within metric stereo image pairs will be presented. First, the motivation for the development is shown, allowing to evaluate stereo images. As the use and availability of metric images of digital type rapidly increases corresponding equipment for the measuring process is needed. Systems which have been developed up to now are either very special ones, founded on high end graphics workstations with an according pricing or simple ones with restricted measuring functionality. A new conception will be shown, avoiding special high end graphics hardware but providing the measuring functionality required. The presented stereo system is based on PC-hardware equipped with a graphic board and uses an object oriented programming technique. The specific needs of a measuring system are shown and the corresponding requirements which have to be met by the system. The key role of OpenGL is described, which supplies some elementary graphic functions, being directly supported by graphic boards and thus provides the performance needed. Further important aspects as modularity and hardware independence and their value for the solution are shown. Finally some sample functions concerned with image display and handling are presented in more detail.

  2. A shape prior-based MRF model for 3D masseter muscle segmentation

    NASA Astrophysics Data System (ADS)

    Majeed, Tahir; Fundana, Ketut; Lüthi, Marcel; Beinemann, Jörg; Cattin, Philippe

    2012-02-01

    Medical image segmentation is generally an ill-posed problem that can only be solved by incorporating prior knowledge. The ambiguities arise due to the presence of noise, weak edges, imaging artifacts, inhomogeneous interior and adjacent anatomical structures having similar intensity profile as the target structure. In this paper we propose a novel approach to segment the masseter muscle using the graph-cut incorporating additional 3D shape priors in CT datasets, which is robust to noise; artifacts; and shape deformations. The main contribution of this paper is in translating the 3D shape knowledge into both unary and pairwise potentials of the Markov Random Field (MRF). The segmentation task is casted as a Maximum-A-Posteriori (MAP) estimation of the MRF. Graph-cut is then used to obtain the global minimum which results in the segmentation of the masseter muscle. The method is tested on 21 CT datasets of the masseter muscle, which are noisy with almost all possessing mild to severe imaging artifacts such as high-density artifacts caused by e.g. the very common dental fillings and dental implants. We show that the proposed technique produces clinically acceptable results to the challenging problem of muscle segmentation, and further provide a quantitative and qualitative comparison with other methods. We statistically show that adding additional shape prior into both unary and pairwise potentials can increase the robustness of the proposed method in noisy datasets.

  3. 3D numerical simulation of the evolutionary process of aeolian downsized crescent-shaped dunes

    NASA Astrophysics Data System (ADS)

    Zhou, Xiaosi; Zhang, Yang; Wang, Yuan; Li, Min

    2016-06-01

    A dune constitutive model was coupled with a large eddy simulation (LES) with the Smagorinsky subgrid-scale (SGS) model to accurately describe the evolutionary process of dunes from the macroscopic perspective of morphological dynamics. A 3D numerical simulation of the evolution of aeolian downsized crescent-shaped dunes was then performed. The evolution of the 3D structure of Gaussian-shaped dunes was simulated under the influence of gravity modulation, which was the same with the vertical oscillation of the sand bed to adjust the threshold of sand grain liftoff in wind tunnel experiments under the same wind speed. The influence of gravity modulation intensity on the characteristic scale parameter of the dune was discussed. Results indicated that the crescent shape of the dune was reproduced with the action of gravity during regulation of the saturation of wind-sand flow at specific times. The crescent shape was not dynamically maintained as time passed, and the dunes dwindled until they reached final decomposition because of wind erosion. The height of the dunes decreased over time, and the height-time curve converged as the intensity of modulation increased linearly. The results qualitatively agreed with those obtained from wind tunnel experiments.

  4. Laser 3-D measuring system and real-time visual feedback for teaching and correcting breathing.

    PubMed

    Povšič, Klemen; Fležar, Matjaž; Možina, Janez; Jezeršek, Matija

    2012-03-01

    We present a novel method for real-time 3-D body-shape measurement during breathing based on the laser multiple-line triangulation principle. The laser projector illuminates the measured surface with a pattern of 33 equally inclined light planes. Simultaneously, the camera records the distorted light pattern from a different viewpoint. The acquired images are transferred to a personal computer, where the 3-D surface reconstruction, shape analysis, and display are performed in real time. The measured surface displacements are displayed with a color palette, which enables visual feedback to the patient while breathing is being taught. The measuring range is approximately 400×600×500 mm in width, height, and depth, respectively, and the accuracy of the calibrated apparatus is ±0.7 mm. The system was evaluated by means of its capability to distinguish between different breathing patterns. The accuracy of the measured volumes of chest-wall deformation during breathing was verified using standard methods of volume measurements. The results show that the presented 3-D measuring system with visual feedback has great potential as a diagnostic and training assistance tool when monitoring and evaluating the breathing pattern, because it offers a simple and effective method of graphical communication with the patient.

  5. Nonlinear Numerical Modeling of Shape Control in IGNITOR in the Presence of 3D Structures

    NASA Astrophysics Data System (ADS)

    Albanese, R.; Ambrosino, G.; de Tommasi, G.; Pironti, A.; Rubinacci, G.; Villone, F.; Ramogida, G.; Coppi, B.

    2014-10-01

    IGNITOR is a high field compact machine designed for the investigation of fusion burning plasmas at or close to ignition. The integrated plasma position, shape and current control plays an important role in its safe operation. The analysis of its behavior taking into account nonlinear and 3D effects can be of great interest for assessing its performances. In fact, the system was designed on the basis of an axisymmetric linearized model. To this purpose, we use a computational tool, called CarMa0NL, with the unprecedented capability of simultaneously considering three-dimensional effects of conductors surrounding the plasma and the inherent nonlinearity of the plasma behaviour itself, in the presence of the complex set of circuit equations describing the control system. Preliminary results already lead to the conclusion that the vertical position response is not much influenced by nonlinear and 3D effects, as the vertical stabilization controller is able to ``hide'' the differences in open-loop models. Here we assess the performance of the shape controller, by coupling the nonlinear plasma evolution in the presence of the 3D vessel with ports to the complex circuit dynamics simulating the integrated closed loop control system.

  6. Probabilistic intra-retinal layer segmentation in 3-D OCT images using global shape regularization.

    PubMed

    Rathke, Fabian; Schmidt, Stefan; Schnörr, Christoph

    2014-07-01

    With the introduction of spectral-domain optical coherence tomography (OCT), resulting in a significant increase in acquisition speed, the fast and accurate segmentation of 3-D OCT scans has become evermore important. This paper presents a novel probabilistic approach, that models the appearance of retinal layers as well as the global shape variations of layer boundaries. Given an OCT scan, the full posterior distribution over segmentations is approximately inferred using a variational method enabling efficient probabilistic inference in terms of computationally tractable model components: Segmenting a full 3-D volume takes around a minute. Accurate segmentations demonstrate the benefit of using global shape regularization: We segmented 35 fovea-centered 3-D volumes with an average unsigned error of 2.46 ± 0.22 μm as well as 80 normal and 66 glaucomatous 2-D circular scans with errors of 2.92 ± 0.5 μm and 4.09 ± 0.98 μm respectively. Furthermore, we utilized the inferred posterior distribution to rate the quality of the segmentation, point out potentially erroneous regions and discriminate normal from pathological scans. No pre- or postprocessing was required and we used the same set of parameters for all data sets, underlining the robustness and out-of-the-box nature of our approach.

  7. A Skeleton-Based 3D Shape Reconstruction of Free-Form Objects with Stereo Vision

    NASA Astrophysics Data System (ADS)

    Saini, Deepika; Kumar, Sanjeev

    2015-12-01

    In this paper, an efficient approach is proposed for recovering the 3D shape of a free-form object from its arbitrary pair of stereo images. In particular, the reconstruction problem is treated as the reconstruction of the skeleton and the external boundary of the object. The reconstructed skeleton is termed as the line-like representation or curve-skeleton of the 3D object. The proposed solution for object reconstruction is based on this evolved curve-skeleton. It is used as a seed for recovering shape of the 3D object, and the extracted boundary is used for terminating the growing process of the object. NURBS-skeleton is used to extract the skeleton of both views. Affine invariant property of the convex hulls is used to establish the correspondence between the skeletons and boundaries in the stereo images. In the growing process, a distance field is defined for each skeleton point as the smallest distance from that point to the boundary of the object. A sphere centered at a skeleton point of radius equal to the minimum distance to the boundary is tangential to the boundary. Filling in the spheres centered at each skeleton point reconstructs the object. Several results are presented in order to check the applicability and validity of the proposed algorithm.

  8. Estimating 3D Leaf and Stem Shape of Nursery Paprika Plants by a Novel Multi-Camera Photography System

    PubMed Central

    Zhang, Yu; Teng, Poching; Shimizu, Yo; Hosoi, Fumiki; Omasa, Kenji

    2016-01-01

    For plant breeding and growth monitoring, accurate measurements of plant structure parameters are very crucial. We have, therefore, developed a high efficiency Multi-Camera Photography (MCP) system combining Multi-View Stereovision (MVS) with the Structure from Motion (SfM) algorithm. In this paper, we measured six variables of nursery paprika plants and investigated the accuracy of 3D models reconstructed from photos taken by four lens types at four different positions. The results demonstrated that error between the estimated and measured values was small, and the root-mean-square errors (RMSE) for leaf width/length and stem height/diameter were 1.65 mm (R2 = 0.98) and 0.57 mm (R2 = 0.99), respectively. The accuracies of the 3D model reconstruction of leaf and stem by a 28-mm lens at the first and third camera positions were the highest, and the number of reconstructed fine-scale 3D model shape surfaces of leaf and stem is the most. The results confirmed the practicability of our new method for the reconstruction of fine-scale plant model and accurate estimation of the plant parameters. They also displayed that our system is a good system for capturing high-resolution 3D images of nursery plants with high efficiency. PMID:27314348

  9. The 3D scanner for measuring body surface area: a simplified calculation in the Chinese adult.

    PubMed

    Yu, Chi-Yuan; Lo, Yu-Hung; Chiou, Wen-Ko

    2003-05-01

    Three-dimensional (3D) surface anthropometry enables us to extend the study to 3D geometry and morphology of mainly external human body tissues. A model is presented for estimation of human body surface area (BSA), which is identical in form to the one proposed in 1916 by DuBois and DuBois is presented. The purpose of this study is to measure BSA, using 3D scanner, and to derive a simple BSA estimation formula for the Chinese adults. In as little as 12s, the Chang Gung Whole-Body Scanner (CGWBS) allows you to capture the shape of the entire human body. The total error in BSA measurement due to scanning measurement and software computational error is less than 1%. The 3D anthropometric measures in a healthy population (n=3951) were investigated, and the results were used to derive a BSA estimation formula. The results seem to be comparable to previous data that measured BSA using traditional methods. The BSA estimation model of this study also validated using 300 new measurements along with the formulae proposed in previous researches. The result suggests that our formula better fits our adults.

  10. Self-Assembly of Shaped Nanoparticles into Free-Standing 2D and 3D Superlattices.

    PubMed

    Li, Weikun; Wang, Ke; Zhang, Peng; He, Jie; Xu, Shaoyi; Liao, Yonggui; Zhu, Jintao; Xie, Xiaolin; Nie, Zhihong

    2016-01-27

    This article describes a novel supramolecular assembly-mediated strategy for the organization of Au nanoparticles (NPs) with different shapes (e.g., spheres, rods, and cubes) into large-area, free-standing 2D and 3D superlattices. This robust approach involves two major steps: (i) the organization of polymer-tethered NPs within the assemblies of supramolecular comblike block copolymers (CBCPs), and (ii) the disassembly of the assembled CBCP structures to produce free-standing NP superlattices. It is demonstrated that the crystal structures and lattice constants of the superlattices can be readily tailored by varying the molecular weight of tethered polymers, the volume fraction of NPs, and the matrix of CBCPs. This template-free approach may open a new avenue for the assembly of NPs into 2D and 3D structures with a wide range of potential applications.

  11. A 3D measurement of the offset in paleoseismological studies

    NASA Astrophysics Data System (ADS)

    Ferrater, Marta; Echeverria, Anna; Masana, Eulàlia; Martínez-Díaz, José J.; Sharp, Warren D.

    2016-05-01

    The slip rate of a seismogenic fault is a crucial parameter for establishing the contribution of the fault to the seismic hazard. It is calculated from measurements of the offset of linear landforms, such channels, produced by the fault combined with their age. The three-dimensional measurement of offset in buried paleochannels is subject to uncertainties that need to be quantitatively assessed and propagated into the slip rate. Here, we present a set of adapted scripts to calculate the net, lateral and vertical tectonic offset components caused by faults, together with their associated uncertainties. This technique is applied here to a buried channel identified in the stratigraphic record during a paleoseismological study at the El Saltador site (Alhama de Murcia fault, Iberian Peninsula). After defining and measuring the coordinates of the key points of a buried channel in the walls of eight trenches excavated parallel to the fault, we (a) adjusted a 3D straight line to these points and then extrapolated the tendency of this line onto a simplified fault plane; (b) repeated these two steps for the segment of the channel in the other side of the fault; and (c) measured the distance between the two resulting intersection points with the fault plane. In doing so, we avoided the near fault modification of the channel trace and obtained a three-dimensional measurement of offset and its uncertainty. This methodology is a substantial modification of previous procedures that require excavating progressively towards the fault, leading to possible underestimation of offset due to diffuse deformation near the fault. Combining the offset with numerical dating of the buried channel via U-series on soil carbonate, we calculated a maximum estimate of the net slip rate and its vertical and lateral components for the Alhama de Murcia fault.

  12. Searching surface orientation of microscopic objects for accurate 3D shape recovery.

    PubMed

    Shim, Seong-O; Mahmood, Muhammad Tariq; Choi, Tae-Sun

    2012-05-01

    In this article, we propose a new shape from focus (SFF) method to estimate 3D shape of microscopic objects using surface orientation cue of each object patch. Most of the SFF algorithms compute the focus value of a pixel from the information of neighboring pixels lying on the same image frame based on an assumption that the small object patch corresponding to the small neighborhood of a pixel is a plane parallel to the focal plane. However, this assumption fails in the optics with limited depth of field where the neighboring pixels of an image have different degree of focus. To overcome this problem, we try to search the surface orientation of the small object patch corresponding to each pixel in the image sequence. Searching of the surface orientation is done indirectly by principal component analysis. Then, the focus value of each pixel is computed from the neighboring pixels lying on the surface perpendicular to the corresponding surface orientation. Experimental results on synthetic and real microscopic objects show that the proposed method produces more accurate 3D shape in comparison to the existing techniques.

  13. 3D nanopore shape control by current-stimulus dielectric breakdown

    NASA Astrophysics Data System (ADS)

    Ying, Cuifeng; Zhang, Yuechuan; Feng, Yanxiao; Zhou, Daming; Wang, Deqiang; Xiang, Yinxiao; Zhou, Wenyuan; Chen, Yongsheng; Du, Chunlei; Tian, Jianguo

    2016-08-01

    We propose a simple and cost-effect method, current-stimulus dielectric breakdown, to manipulate the 3D shapes of the nanochannels in 20-nm-thick SiNx membranes. Besides the precise control of nanopore size, the cone orientation can be determined by the pulse polarity. The cone angle of nanopores can be systematically tuned by simply changing the stimulus pulse waveform, allowing the gradual shape control from conical to obconical. After they are formed, the cone angle of these nanopores can be further tuned in a certain range by adjusting the widening pulse. Such size and 3D shape controllable abiotic nanopores can construct a constriction in the nanochannel and hence produce a sub-nm "sensing zone" to suit any desired bio-sensing or precise DNA sequencing. Using these conical nanopores, 20-nt ssDNA composed of homopolymers (poly(dA)20, poly(dC)20, and poly(dT)20) can be clearly differentiated by their ionic current signals.

  14. A 3-D constitutive model for pressure-dependent phase transformation of porous shape memory alloys.

    PubMed

    Ashrafi, M J; Arghavani, J; Naghdabadi, R; Sohrabpour, S

    2015-02-01

    Porous shape memory alloys (SMAs) exhibit the interesting characteristics of porous metals together with shape memory effect and pseudo-elasticity of SMAs that make them appropriate for biomedical applications. In this paper, a 3-D phenomenological constitutive model for the pseudo-elastic behavior and shape memory effect of porous SMAs is developed within the framework of irreversible thermodynamics. Comparing to micromechanical and computational models, the proposed model is computationally cost effective and predicts the behavior of porous SMAs under proportional and non-proportional multiaxial loadings. Considering the pressure dependency of phase transformation in porous SMAs, proper internal variables, free energy and limit functions are introduced. With the aim of numerical implementation, time discretization and solution algorithm for the proposed model are also presented. Due to lack of enough experimental data on multiaxial loadings of porous SMAs, we employ a computational simulation method (CSM) together with available experimental data to validate the proposed constitutive model. The method is based on a 3-D finite element model of a representative volume element (RVE) with random pores pattern. Good agreement between the numerical predictions of the model and CSM results is observed for elastic and phase transformation behaviors in various thermomechanical loadings.

  15. 3D precision measurements of meter sized surfaces using low cost illumination and camera techniques

    NASA Astrophysics Data System (ADS)

    Ekberg, Peter; Daemi, Bita; Mattsson, Lars

    2017-04-01

    Using dedicated stereo camera systems and structured light is a well-known method for measuring the 3D shape of large surfaces. However the problem is not trivial when high accuracy, in the range of few tens of microns, is needed. Many error sources need to be handled carefully in order to obtain high quality results. In this study, we present a measurement method based on low-cost camera and illumination solutions combined with high-precision image analysis and a new approach in camera calibration and 3D reconstruction. The setup consists of two ordinary digital cameras and a Gobo projector as a structured light source. A matrix of dots is projected onto the target area. The two cameras capture the images of the projected pattern on the object. The images are processed by advanced subpixel resolution algorithms prior to the application of the 3D reconstruction technique. The strength of the method lays in a different approach for calibration, 3D reconstruction, and high-precision image analysis algorithms. Using a 10 mm pitch pattern of the light dots, the method is capable of reconstructing the 3D shape of surfaces. The precision (1σ repeatability) in the measurements is  <10 µm over a volume of 60  ×  50  ×  10 cm3 at a hardware cost of ~2% of available advanced measurement techniques. The expanded uncertainty (95% confidence level) is estimated to be 83 µm, with the largest uncertainty contribution coming from the absolute length of the metal ruler used as reference.

  16. Does shape co-variation between the skull and the mandible have functional consequences? A 3D approach for a 3D problem.

    PubMed

    Cornette, Raphaël; Baylac, Michel; Souter, Thibaud; Herrel, Anthony

    2013-10-01

    Morpho-functional patterns are important drivers of phenotypic diversity given their importance in a fitness-related context. Although modularity of the mandible and skull has been studied extensively in mammals, few studies have explored shape co-variation between these two structures. Despite being developmentally independent, the skull and mandible form a functionally integrated unit. In the present paper we use 3D surface geometric morphometric methods allowing us to explore the form of both skull and mandible in its 3D complexity using the greater white-toothed shrew as a model. This approach allows an accurate 3D description of zones devoid of anatomical landmarks that are functionally important. Two-block partial least-squares approaches were used to describe the co-variation of form between skull and mandible. Moreover, a 3D biomechanical model was used to explore the functional consequences of the observed patterns of co-variation. Our results show the efficiency of the method in investigations of complex morpho-functional patterns. Indeed, the description of shape co-variation between the skull and the mandible highlighted the location and the intensity of their functional relationships through the jaw adductor muscles linking these two structures. Our results also demonstrated that shape co-variation in form between the skull and mandible has direct functional consequences on the recruitment of muscles during biting.

  17. Illustrating Surface Shape in Volume Data via Principal Direction-Driven 3D Line Integral Convolution

    NASA Technical Reports Server (NTRS)

    Interrante, Victoria

    1997-01-01

    The three-dimensional shape and relative depth of a smoothly curving layered transparent surface may be communicated particularly effectively when the surface is artistically enhanced with sparsely distributed opaque detail. This paper describes how the set of principal directions and principal curvatures specified by local geometric operators can be understood to define a natural 'flow' over the surface of an object, and can be used to guide the placement of the lines of a stroke texture that seeks to represent 3D shape information in a perceptually intuitive way. The driving application for this work is the visualization of layered isovalue surfaces in volume data, where the particular identity of an individual surface is not generally known a priori and observers will typically wish to view a variety of different level surfaces from the same distribution, superimposed over underlying opaque structures. By advecting an evenly distributed set of tiny opaque particles, and the empty space between them, via 3D line integral convolution through the vector field defined by the principal directions and principal curvatures of the level surfaces passing through each gridpoint of a 3D volume, it is possible to generate a single scan-converted solid stroke texture that may intuitively represent the essential shape information of any level surface in the volume. To generate longer strokes over more highly curved areas, where the directional information is both most stable and most relevant, and to simultaneously downplay the visual impact of directional information in the flatter regions, one may dynamically redefine the length of the filter kernel according to the magnitude of the maximum principal curvature of the level surface at the point around which it is applied.

  18. From Heteroaromatic Acids and Imines to Azaspirocycles: Stereoselective Synthesis and 3D Shape Analysis

    PubMed Central

    Chambers, Sarah J.; Coulthard, Graeme; Unsworth, William P.; O'Brien, Peter

    2016-01-01

    Abstract Heteroaromatic carboxylic acids have been directly coupled with imines using propylphosphonic anhydride (T3P) and NEt(iPr)2 to form azaspirocycles via intermediate N‐acyliminium ions. Spirocyclic indolenines (3H‐indoles), azaindolenines, 2H‐pyrroles and 3H‐pyrroles were all accessed using this metal‐free approach. The reactions typically proceed with high diastereoselectivity and 3D shape analysis confirms that the products formed occupy areas of chemical space that are under‐represented in existing drugs and high throughput screening libraries. PMID:26918778

  19. Scale Space Graph Representation and Kernel Matching for Non Rigid and Textured 3D Shape Retrieval.

    PubMed

    Garro, Valeria; Giachetti, Andrea

    2016-06-01

    In this paper we introduce a novel framework for 3D object retrieval that relies on tree-based shape representations (TreeSha) derived from the analysis of the scale-space of the Auto Diffusion Function (ADF) and on specialized graph kernels designed for their comparison. By coupling maxima of the Auto Diffusion Function with the related basins of attraction, we can link the information at different scales encoding spatial relationships in a graph description that is isometry invariant and can easily incorporate texture and additional geometrical information as node and edge features. Using custom graph kernels it is then possible to estimate shape dissimilarities adapted to different specific tasks and on different categories of models, making the procedure a powerful and flexible tool for shape recognition and retrieval. Experimental results demonstrate that the method can provide retrieval scores similar or better than state-of-the-art on textured and non textured shape retrieval benchmarks and give interesting insights on effectiveness of different shape descriptors and graph kernels.

  20. Using 3-D shaping to manipulate ITG turbulence saturation in stellarators

    NASA Astrophysics Data System (ADS)

    Hegna, C. C.; Terry, P. W.

    2016-10-01

    A frontier research area for stellarator design is to develop methods to alter turbulent transport. In this work, efforts are developed to understand how 3-D shaping can be used to affect turbulent transport saturation physics. To accomplish this goal, we utilize a paradigm for turbulent saturation that relies on zonal flow mediated transfer of energy from linear instability to damped eigenmodes. A simplified 3-field fluid model for ion temperature gradient turbulence is developed that allows for the presence of general 3-D geometry. The crucial nonlinear physics is associated with the triplet interaction of a linear instability, a zonal flow and a damped mode. The most vigorous interaction occurs when the three-wave frequency mismatch of these three modes is minimized, connoting a large nonlinear interaction time with saturated turbulence levels proportional to the three-wave frequency mismatch. Initial studies will be geared toward how 3-D geometry can be used to minimize this frequency mismatch. Research supported by U. S. DoE under Grant Nos. DE-FG02-99ER54546 and DE-FG02-89ER53291.

  1. Initial results obtained from a 3D computational model of the shaped charge jet particulation process

    SciTech Connect

    Zernow, L.; Chapyak, E.J.

    1998-02-01

    In a previous paper, the authors discussed a 3D computational model for the particulation of a stretching shaped charge jet, based on the experimentally observed double-helix surface perturbations on softly recovered jet particles. The 3D problem was derived from the unperturbed 2D problem, which was first used to generate a stretching jet. A portion of this 2D jet was selected for study in the cylindrical 3D mode, and the double-helix perturbations were placed on the cylinder surface. This initial computation was greatly simplified, to make it feasible to run on a CM 200 massively parallel processor. The initial output of this computation, which is being published here for the first time, leads to a significant simplification of the analysis of the particulation process, by avoiding the search for the elusive ``most favored wavelength`` which is characteristic of 2D axi-symmetric analyses. Previously unnoticed characteristics of flash radiographs from Viper jets, appear to support the computational results obtained, despite a counter-intuitive prediction of the location of necking loci, relative to the perturbing helices. The approximations used in this initial computation are discussed critically. Planned improvements are defined. A vision of future fundamental computations, which become possible with more powerful ASCI machines, is projected.

  2. Automatic 3D kidney segmentation based on shape constrained GC-OAAM

    NASA Astrophysics Data System (ADS)

    Chen, Xinjian; Summers, Ronald M.; Yao, Jianhua

    2011-03-01

    The kidney can be classified into three main tissue types: renal cortex, renal medulla and renal pelvis (or collecting system). Dysfunction of different renal tissue types may cause different kidney diseases. Therefore, accurate and efficient segmentation of kidney into different tissue types plays a very important role in clinical research. In this paper, we propose an automatic 3D kidney segmentation method which segments the kidney into the three different tissue types: renal cortex, medulla and pelvis. The proposed method synergistically combines active appearance model (AAM), live wire (LW) and graph cut (GC) methods, GC-OAAM for short. Our method consists of two main steps. First, a pseudo 3D segmentation method is employed for kidney initialization in which the segmentation is performed slice-by-slice via a multi-object oriented active appearance model (OAAM) method. An improved iterative model refinement algorithm is proposed for the AAM optimization, which synergistically combines the AAM and LW method. Multi-object strategy is applied to help the object initialization. The 3D model constraints are applied to the initialization result. Second, the object shape information generated from the initialization step is integrated into the GC cost computation. A multi-label GC method is used to segment the kidney into cortex, medulla and pelvis. The proposed method was tested on 19 clinical arterial phase CT data sets. The preliminary results showed the feasibility and efficiency of the proposed method.

  3. Measuring a hidden coordinate: Rate-exchange kinetics from 3D correlation functions.

    PubMed

    Berg, Mark A; Darvin, Jason R

    2016-08-07

    Nonexponential kinetics imply the existence of at least one slow variable other than the observable, that is, the system has a "hidden" coordinate. We develop a simple, but general, model that allows multidimensional correlation functions to be calculated for these systems. Homogeneous and heterogeneous mechanisms are both included, and slow exchange of the rates is allowed. This model shows that 2D and 3D correlation functions of the observable measure the distribution and kinetics of the hidden coordinate controlling the rate exchange. Both the mean exchange time and the shape of the exchange relaxation are measurable. However, complications arise because higher correlation functions are sums of multiple "pathways," each of which measures different dynamics. Only one 3D pathway involves exchange dynamics. Care must be used to extract exchange dynamics without contamination from other processes.

  4. Using 3-D shape models to guide segmentation of MR brain images.

    PubMed Central

    Hinshaw, K. P.; Brinkley, J. F.

    1997-01-01

    Accurate segmentation of medical images poses one of the major challenges in computer vision. Approaches that rely solely on intensity information frequently fail because similar intensity values appear in multiple structures. This paper presents a method for using shape knowledge to guide the segmentation process, applying it to the task of finding the surface of the brain. A 3-D model that includes local shape constraints is fitted to an MR volume dataset. The resulting low-resolution surface is used to mask out regions far from the cortical surface, enabling an isosurface extraction algorithm to isolate a more detailed surface boundary. The surfaces generated by this technique are comparable to those achieved by other methods, without requiring user adjustment of a large number of ad hoc parameters. Images Figure 1 Figure 2 Figure 3 Figure 4 PMID:9357670

  5. Analyzing the relevance of shape descriptors in automated recognition of facial gestures in 3D images

    NASA Astrophysics Data System (ADS)

    Rodriguez A., Julian S.; Prieto, Flavio

    2013-03-01

    The present document shows and explains the results from analyzing shape descriptors (DESIRE and Spherical Spin Image) for facial recognition of 3D images. DESIRE is a descriptor made of depth images, silhouettes and rays extended from a polygonal mesh; whereas the Spherical Spin Image (SSI) associated to a polygonal mesh point, is a 2D histogram built from neighboring points by using the position information that captures features of the local shape. The database used contains images of facial expressions which in average were recognized 88.16% using a neuronal network and 91.11% with a Bayesian classifier in the case of the first descriptor; in contrast, the second descriptor only recognizes in average 32% and 23,6% using the same mentioned classifiers respectively.

  6. Multidimensional measurement by using 3-D PMD sensors

    NASA Astrophysics Data System (ADS)

    Ringbeck, T.; Möller, T.; Hagebeuker, B.

    2007-06-01

    Optical Time-of-Flight measurement gives the possibility to enhance 2-D sensors by adding a third dimension using the PMD principle. Various applications in the automotive (e.g. pedestrian safety), industrial, robotics and multimedia fields require robust three-dimensional data (Schwarte et al., 2000). These applications, however, all have different requirements in terms of resolution, speed, distance and target characteristics. PMDTechnologies has developed 3-D sensors based on standard CMOS processes that can provide an optimized solution for a wide field of applications combined with high integration and cost-effective production. These sensors are realized in various layout formats from single pixel solutions for basic applications to low, middle and high resolution matrices for applications requiring more detailed data. Pixel pitches ranging from 10 micrometer up to a 300 micrometer or larger can be realized and give the opportunity to optimize the sensor chip depending on the application. One aspect of all optical sensors based on a time-of-flight principle is the necessity of handling background illumination. This can be achieved by various techniques, such as optical filters and active circuits on chip. The sensors' usage of the in-pixel so-called SBI-circuitry (suppression of background illumination) makes it even possible to overcome the effects of bright ambient light. This paper focuses on this technical requirement. In Sect. 2 we will roughly describe the basic operation principle of PMD sensors. The technical challenges related to the system characteristics of an active optical ranging technique are described in Sect. 3, technical solutions and measurement results are then presented in Sect. 4. We finish this work with an overview of actual PMD sensors and their key parameters (Sect. 5) and some concluding remarks in Sect. 6.

  7. Hypertrophy changes 3D shape of hiPSC-cardiomyocytes: Implications for cellular maturation in regenerative medicine.

    PubMed

    Rupert, Cassady E; Chang, Heidi H; Coulombe, Kareen L K

    2017-02-01

    Advances in the use of human induced pluripotent stem cell (hiPSC)-derived cardiomyocytes for heart regeneration and in vitro disease models demand a greater understanding of how these cells grow and mature in 3-dimensional space. In this study, we developed an analysis methodology of single cardiomyocytes plated on 2D surfaces to assess their 3D myofilament volume and its z-height distribution, or shape, upon hypertrophic stimulation via phenylephrine (PE) treatment or long-term culture ("aging"). Cardiomyocytes were fixed and labeled with α-actinin for confocal microscopy imaging to obtain z-stacks for 3D myofilament volume analysis. In primary neonatal rat ventricular myocytes (NRVMs), area increased 72% with PE, while volume increased 31%. In hiPSC-cardiomyocytes, area increased 70% with PE and 4-fold with aging; however, volume increased significantly only with aging by 2.3-fold. Analysis of z-height myofilament volume distribution in hiPSC-cardiomyocytes revealed a shift from a fairly uniform distribution in control cells to a basally located volume in a more flat and spread morphology with PE and even more so with aging, a shape that was akin to all NRVMs analyzed. These results suggest that 2D area is not a sufficient measure of hiPSC-cardiomyocyte growth and maturation, and that changes in 3D volume and its distribution are essential for understanding hiPSC-cardiomyocyte biology for disease modeling and regenerative medicine applications.

  8. Segmentation of the common carotid artery with active shape models from 3D ultrasound images

    NASA Astrophysics Data System (ADS)

    Yang, Xin; Jin, Jiaoying; He, Wanji; Yuchi, Ming; Ding, Mingyue

    2012-03-01

    Carotid atherosclerosis is a major cause of stroke, a leading cause of death and disability. In this paper, we develop and evaluate a new segmentation method for outlining both lumen and adventitia (inner and outer walls) of common carotid artery (CCA) from three-dimensional ultrasound (3D US) images for carotid atherosclerosis diagnosis and evaluation. The data set consists of sixty-eight, 17× 2× 2, 3D US volume data acquired from the left and right carotid arteries of seventeen patients (eight treated with 80mg atorvastain and nine with placebo), who had carotid stenosis of 60% or more, at baseline and after three months of treatment. We investigate the use of Active Shape Models (ASMs) to segment CCA inner and outer walls after statin therapy. The proposed method was evaluated with respect to expert manually outlined boundaries as a surrogate for ground truth. For the lumen and adventitia segmentations, respectively, the algorithm yielded Dice Similarity Coefficient (DSC) of 93.6%+/- 2.6%, 91.8%+/- 3.5%, mean absolute distances (MAD) of 0.28+/- 0.17mm and 0.34 +/- 0.19mm, maximum absolute distances (MAXD) of 0.87 +/- 0.37mm and 0.74 +/- 0.49mm. The proposed algorithm took 4.4 +/- 0.6min to segment a single 3D US images, compared to 11.7+/-1.2min for manual segmentation. Therefore, the method would promote the translation of carotid 3D US to clinical care for the fast, safety and economical monitoring of the atherosclerotic disease progression and regression during therapy.

  9. A 3D endoscopy reconstruction as a saliency map for analysis of polyp shapes

    NASA Astrophysics Data System (ADS)

    Ruano, Josue; Martínez, Fabio; Gómez, Martín.; Romero, Eduardo

    2015-01-01

    A first diagnosis of colorectal cancer is performed by examination of polyp shape and appearance during an endoscopy routine procedure. However, the video-endoscopy is highly noisy because exacerbated physiological conditions like increased motility or secretion may limit the visual analysis of lesions. In this work a 3D reconstruction of the digestive tract is proposed, facilitating the polyp shape evaluation by highlighting its surface geometry and allowing an analysis from different perspectives. The method starts by a spatio-temporal map, constructed to group the different regions of the tract by their similar dynamic patterns during the sequence. Then, such map was convolved with a second derivative of a Gaussian kernel that emulates the camera distortion and allows to highlight the polyp surface. The position initialization in each frame of the kernel was computed from expert manual delineation and propagated along the sequence based on. Results show reliable reconstructions, with a salient 3D polyp structure that can then be better observed.

  10. 3D printing of composite tissue with complex shape applied to ear regeneration.

    PubMed

    Lee, Jung-Seob; Hong, Jung Min; Jung, Jin Woo; Shim, Jin-Hyung; Oh, Jeong-Hoon; Cho, Dong-Woo

    2014-06-01

    In the ear reconstruction field, tissue engineering enabling the regeneration of the ear's own tissue has been considered to be a promising technology. However, the ear is known to be difficult to regenerate using traditional methods due to its complex shape and composition. In this study, we used three-dimensional (3D) printing technology including a sacrificial layer process to regenerate both the auricular cartilage and fat tissue. The main part was printed with poly-caprolactone (PCL) and cell-laden hydrogel. At the same time, poly-ethylene-glycol (PEG) was also deposited as a sacrificial layer to support the main structure. After complete fabrication, PEG can be easily removed in aqueous solutions, and the procedure for removing PEG has no effect on the cell viability. For fabricating composite tissue, chondrocytes and adipocytes differentiated from adipose-derived stromal cells were encapsulated in hydrogel to dispense into the cartilage and fat regions, respectively, of ear-shaped structures. Finally, we fabricated the composite structure for feasibility testing, satisfying expectations for both the geometry and anatomy of the native ear. We also carried out in vitro assays for evaluating the chondrogenesis and adipogenesis of the cell-printed structure. As a result, the possibility of ear regeneration using 3D printing technology which allowed tissue formation from the separately printed chondrocytes and adipocytes was demonstrated.

  11. Construction of a 3D-shaped, natural product like fragment library by fragmentation and diversification of natural products.

    PubMed

    Prescher, Horst; Koch, Guido; Schuhmann, Tim; Ertl, Peter; Bussenault, Alex; Glick, Meir; Dix, Ina; Petersen, Frank; Lizos, Dimitrios E

    2017-02-01

    A fragment library consisting of 3D-shaped, natural product-like fragments was assembled. Library construction was mainly performed by natural product degradation and natural product diversification reactions and was complemented by the identification of 3D-shaped, natural product like fragments available from commercial sources. In addition, during the course of these studies, novel rearrangements were discovered for Massarigenin C and Cytochalasin E. The obtained fragment library has an excellent 3D-shape and natural product likeness, covering a novel, unexplored and underrepresented chemical space in fragment based drug discovery (FBDD).

  12. Measuring the Visual Salience of 3D Printed Objects.

    PubMed

    Wang, Xi; Lindlbauer, David; Lessig, Christian; Maertens, Marianne; Alexa, Marc

    2016-01-01

    To investigate human viewing behavior on physical realizations of 3D objects, the authors use an eye tracker with scene camera and fiducial markers on 3D objects to gather fixations on the presented stimuli. They use this data to validate assumptions regarding visual saliency that so far have experimentally only been analyzed for flat stimuli. They provide a way to compare fixation sequences from different subjects and developed a model for generating test sequences of fixations unrelated to the stimuli. Their results suggest that human observers agree in their fixations for the same object under similar viewing conditions. They also developed a simple procedure to validate computational models for visual saliency of 3D objects and found that popular models of mesh saliency based on center surround patterns fail to predict fixations.

  13. 3D Measurement of Anatomical Cross-sections of Foot while Walking

    NASA Astrophysics Data System (ADS)

    Kimura, Makoto; Mochimaru, Masaaki; Kanade, Takeo

    Recently, techniques for measuring and modeling of human body are taking attention, because human models are useful for ergonomic design in manufacturing. We aim to measure accurate shape of human foot that will be useful for the design of shoes. For such purpose, shape measurement of foot in motion is obviously important, because foot shape in the shoe is deformed while walking or running. In this paper, we propose a method to measure anatomical cross-sections of foot while walking. No one had ever measured dynamic shape of anatomical cross-sections, though they are very basic and popular in the field of biomechanics. Our proposed method is based on multi-view stereo method. The target cross-sections are painted in individual colors (red, green, yellow and blue), and the proposed method utilizes the characteristic of target shape in the camera captured images. Several nonlinear conditions are introduced in the process to find the consistent correspondence in all images. Our desired accuracy is less than 1mm error, which is similar to the existing 3D scanners for static foot measurement. In our experiments, the proposed method achieved the desired accuracy.

  14. New 3-D coordination polymers based on semi-rigid V-shape tetracarboxylates

    SciTech Connect

    Huang, Jing-Jing; Xu, Wei; Wang, Yan-Ning; Yu, Jie-Hui; Zhang, Ping; Xu, Ji-Qing

    2015-03-15

    Under the hydrothermal conditions, the reactions of transition-metal salts, tetracarboxylic acids and N,N′-donor ligands yielded three new coordination polymers as [Cu{sub 4}(fph){sub 2}(bpe){sub 3}(H{sub 2}O){sub 2}]·2H{sub 2}O (fph=4,4′-(hexafluoroisopropylidene)diphthalate, bpe=1,2-bis(pyridyl)ethylene) 1, [Co{sub 2}(fph)(bpa){sub 2}(H{sub 2}O){sub 2}]·3H{sub 2}O (bpa=1,2-bis(pyridyl)ethylane) 2, and [Ni(H{sub 2}O)(H{sub 2}oph)(bpa)] (oph=4,4′-oxydiphthalate) 3. X-ray single-crystal diffraction analysis revealed that the title three compounds all possess the three-dimensional (3-D) network structures. For compound 1, the fph molecules first link the Cu{sup 2+} ions into a two-dimensional (2-D) wave-like layer with a (4,4) topology. The bpe molecules act as the second linkers, extending the 2-D layers into a 3-D network. For compound 2, the fph molecules still serve as the first connectors, linking the Co{sup 2+} ions into a one-dimensional (1-D) tube-like chain. Then the bpa molecules propagate the chains into a 3-D (4,4,4)-connected network. In the formation of the 3-D network of compound 3, the oph molecule does not play a role. The bpa molecules as well as the water molecules act as a mixed bridge. Only a kind of 4-connected metal node is observed in compound 3. The magnetic properties of compounds 1–3 were investigated and all exhibit the predominant antiferromegnetic magnetic behaviors. - Graphical abstract: Structures of three semi-rigid V-shape tetracarboxylate-based coordination polymers were reported, and their magnetic properties were investigated. - Highlights: • Structures of three tetracarboxylate-based coordination polymers were reported. • Role of organic bases in metal–tetracarboxylate compounds was discussed. • Characters of V-shape and semi-rigidity for tetracarboxylate play a key role in crystal growth. • Their magnetic properties were investigated.

  15. On 3-D modeling and automatic regridding in shape design sensitivity analysis

    NASA Technical Reports Server (NTRS)

    Choi, Kyung K.; Yao, Tse-Min

    1987-01-01

    The material derivative idea of continuum mechanics and the adjoint variable method of design sensitivity analysis are used to obtain a computable expression for the effect of shape variations on measures of structural performance of three-dimensional elastic solids.

  16. Simultaneous perimeter measurement for 3D object with a binocular stereo vision measurement system

    NASA Astrophysics Data System (ADS)

    Peng, Zhao; Guo-Qiang, Ni

    2010-04-01

    A simultaneous measurement scheme for multiple three-dimensional (3D) objects' surface boundary perimeters is proposed. This scheme consists of three steps. First, a binocular stereo vision measurement system with two CCD cameras is devised to obtain the two images of the detected objects' 3D surface boundaries. Second, two geodesic active contours are applied to converge to the objects' contour edges simultaneously in the two CCD images to perform the stereo matching. Finally, the multiple spatial contours are reconstructed using the cubic B-spline curve interpolation. The true contour length of every spatial contour is computed as the true boundary perimeter of every 3D object. An experiment on the bent surface's perimeter measurement for the four 3D objects indicates that this scheme's measurement repetition error decreases to 0.7 mm.

  17. GEM printer: 3D gel printer for free shaping of functional gel engineering materials

    NASA Astrophysics Data System (ADS)

    Furukawa, Hidemitsu; Muroi, Hisato; Yamamoto, Kouki; Serizawa, Ryo; Gong, Jin

    2013-04-01

    In the past decade, several high-strength gels have been developed. These gels are expected to use as a kind of new engineering materials in the fields of industry and medical as substitutes to polyester fibers, which are materials of artificial blood vessels. The gels have both low surface friction and well permeability due to a large amount of water absorbed in the gels, which are superiority of the gels compering to the polyester fibers. It is, however, difficult for gels to be forked structure or cavity structure by using cutting or mold. Consequently, it is necessary to develop the additive manufacturing device to synthesize and mode freely gels at the same time. Here we try to develop an optical 3D gel printer that enables gels to be shaped precisely and freely. For the free forming of high-strength gels, the 1st gels are ground to particles and mixed with 2nd pregel solution, and the mixed solution is gelled by the irradiation of UV laser beam through an optical fiber. The use of the optical fiber makes one-point UV irradiation possible. Since the optical fiber is controlled by 3D-CAD, the precise and free molding in XYZ directions is easily realized. We successfully synthesized tough gels using the gel printer.

  18. Implicit Shape Models for Object Detection in 3d Point Clouds

    NASA Astrophysics Data System (ADS)

    Velizhev, A.; Shapovalov, R.; Schindler, K.

    2012-07-01

    We present a method for automatic object localization and recognition in 3D point clouds representing outdoor urban scenes. The method is based on the implicit shape models (ISM) framework, which recognizes objects by voting for their center locations. It requires only few training examples per class, which is an important property for practical use. We also introduce and evaluate an improved version of the spin image descriptor, more robust to point density variation and uncertainty in normal direction estimation. Our experiments reveal a significant impact of these modifications on the recognition performance. We compare our results against the state-of-the-art method and get significant improvement in both precision and recall on the Ohio dataset, consisting of combined aerial and terrestrial LiDAR scans of 150,000 m2 of urban area in total.

  19. Photoactive Self-Shaping Hydrogels as Noncontact 3D Macro/Microscopic Photoprinting Platforms.

    PubMed

    Liao, Yue; An, Ning; Wang, Ning; Zhang, Yinyu; Song, Junfei; Zhou, Jinxiong; Liu, Wenguang

    2015-12-01

    A photocleavable terpolymer hydrogel cross-linked with o-nitrobenzyl derivative cross-linker is shown to be capable of self-shaping without losing its physical integrity and robustness due to spontaneous asymmetric swelling of network caused by UV-light-induced gradient cleavage of chemical cross-linkages. The continuum model and finite element method are used to elucidate the curling mechanism underlying. Remarkably, based on the self-changing principle, the photosensitive hydrogels can be developed as photoprinting soft and wet platforms onto which specific 3D characters and images are faithfully duplicated in macro/microscale without contact by UV light irradiation under the cover of customized photomasks. Importantly, a quick response (QR) code is accurately printed on the photoactive hydrogel for the first time. Scanning QR code with a smartphone can quickly connect to a web page. This photoactive hydrogel is promising to be a new printing or recording material.

  20. The Eta Carinae Homunculus in Full 3D with X-Shooter and Shape

    NASA Technical Reports Server (NTRS)

    Steffen, Wolfgang; Teodoro, Mairan; Madura, Thomas I.; Groh, Jose H.; Gull, Theodore R.; Mehner, Andrea; Corcoran, Michael F.; Damineli, Augusto; Hamaguchi, Kenji

    2014-01-01

    Massive stars like Eta Carinae are extremely rare in comparison to stars such as the Sun, and currently we know of only a handful of stars with masses of more than 100 solar mass in the Milky Way. Such massive stars were much more frequent in the early history of the Universe and had a huge impact on its evolution. Even among this elite club, Eta Car is outstanding, in particular because of its giant eruption around 1840 that produced the beautiful bipolar nebula now known as the Homunculus. In this study, we used detailed spatio-kinematic information obtained from X-shooter spectra to reconstruct the 3D structure of the Homunculus. The small-scale features suggest that the central massive binary played a significant role in shaping the Homunculus.

  1. The Eta Carinae Homunculus in Full 3D with X-shooter and Shape

    NASA Astrophysics Data System (ADS)

    Steffen, W.; Teodoro, M.; Madura, T. I.; Groh, J. H.; Gull, T. R.; Mehner, A.; Corcoran, M. F.; Damineli, A.; Hamaguchi, K.

    2014-12-01

    Massive stars like Eta Carinae are extremely rare in comparison to stars such as the Sun, and currently we know of only a handful of stars with masses of more than 100 Msun in the Milky Way. Such massive stars were much more frequent in the early history of the Universe and had a huge impact on its evolution. Even among this elite club, η Car is outstanding, in particular because of its giant eruption around 1840 that produced the beautiful bipolar nebula now known as the Homunculus. In this study, we used detailed spatio-kinematic information obtained from X-shooter spectra to reconstruct the 3D structure of the Homunculus. The small-scale features suggest that the central massive binary played a significant role in shaping the Homunculus.

  2. Changes in quantitative 3D shape features of the optic nerve head associated with age

    NASA Astrophysics Data System (ADS)

    Christopher, Mark; Tang, Li; Fingert, John H.; Scheetz, Todd E.; Abramoff, Michael D.

    2013-02-01

    Optic nerve head (ONH) structure is an important biological feature of the eye used by clinicians to diagnose and monitor progression of diseases such as glaucoma. ONH structure is commonly examined using stereo fundus imaging or optical coherence tomography. Stereo fundus imaging provides stereo views of the ONH that retain 3D information useful for characterizing structure. In order to quantify 3D ONH structure, we applied a stereo correspondence algorithm to a set of stereo fundus images. Using these quantitative 3D ONH structure measurements, eigen structures were derived using principal component analysis from stereo images of 565 subjects from the Ocular Hypertension Treatment Study (OHTS). To evaluate the usefulness of the eigen structures, we explored associations with the demographic variables age, gender, and race. Using regression analysis, the eigen structures were found to have significant (p < 0.05) associations with both age and race after Bonferroni correction. In addition, classifiers were constructed to predict the demographic variables based solely on the eigen structures. These classifiers achieved an area under receiver operating characteristic curve of 0.62 in predicting a binary age variable, 0.52 in predicting gender, and 0.67 in predicting race. The use of objective, quantitative features or eigen structures can reveal hidden relationships between ONH structure and demographics. The use of these features could similarly allow specific aspects of ONH structure to be isolated and associated with the diagnosis of glaucoma, disease progression and outcomes, and genetic factors.

  3. Localization of spots in FISH images of breast cancer using 3-D shape analysis.

    PubMed

    Les, T; Markiewicz, T; Osowski, S; Jesiotr, M; Kozlowski, W

    2016-06-01

    The fluorescence in situ (FISH) belongs to the most often used molecular cytogenetic techniques, applied in many areas of diagnosis and research. The analysis of FISH images relies on localization and counting the red and green spots in order to determine HER2 status of the breast cancer samples. The algorithm of spot localization presented in the paper is based on 3-D shape analysis of the image objects. The subsequent regions of the image are matched to the reference pattern and the results of this matching influence localization of spots. The paper compares different shapes of the reference pattern and their efficiency in spot localization. The numerical experiments have been performed on the basis of 12 cases (patients), each represented by three images. Few thousands of cells have been analysed. The quantitative analyses comparing different versions of algorithm are presented and compared to the expert results. The best version of the procedure provides the absolute relative difference to the expert results smaller than 3%. These results confirm high efficiency of the proposed approach to the spot identification. The proposed method of FISH image analysis improves the efficiency of detecting fluorescent signals in FISH images. The evaluation results are encouraging for further testing of the developed automatic system directed to application in medical practice.

  4. 3D shape analysis of the brain's third ventricle using a midplane encoded symmetric template model

    PubMed Central

    Kim, Jaeil; Valdés Hernández, Maria del C.; Royle, Natalie A.; Maniega, Susana Muñoz; Aribisala, Benjamin S.; Gow, Alan J.; Bastin, Mark E.; Deary, Ian J.; Wardlaw, Joanna M.; Park, Jinah

    2016-01-01

    Background Structural changes of the brain's third ventricle have been acknowledged as an indicative measure of the brain atrophy progression in neurodegenerative and endocrinal diseases. To investigate the ventricular enlargement in relation to the atrophy of the surrounding structures, shape analysis is a promising approach. However, there are hurdles in modeling the third ventricle shape. First, it has topological variations across individuals due to the inter-thalamic adhesion. In addition, as an interhemispheric structure, it needs to be aligned to the midsagittal plane to assess its asymmetric and regional deformation. Method To address these issues, we propose a model-based shape assessment. Our template model of the third ventricle consists of a midplane and a symmetric mesh of generic shape. By mapping the template's midplane to the individuals’ brain midsagittal plane, we align the symmetric mesh on the midline of the brain before quantifying the third ventricle shape. To build the vertex-wise correspondence between the individual third ventricle and the template mesh, we employ a minimal-distortion surface deformation framework. In addition, to account for topological variations, we implement geometric constraints guiding the template mesh to have zero width where the inter-thalamic adhesion passes through, preventing vertices crossing between left and right walls of the third ventricle. The individual shapes are compared using a vertex-wise deformity from the symmetric template. Results Experiments on imaging and demographic data from a study of aging showed that our model was sensitive in assessing morphological differences between individuals in relation to brain volume (i.e. proxy for general brain atrophy), gender and the fluid intelligence at age 72. It also revealed that the proposed method can detect the regional and asymmetrical deformation unlike the conventional measures: volume (median 1.95 ml, IQR 0.96 ml) and width of the third

  5. Object Recognition in Flight: How Do Bees Distinguish between 3D Shapes?

    PubMed

    Werner, Annette; Stürzl, Wolfgang; Zanker, Johannes

    2016-01-01

    Honeybees (Apis mellifera) discriminate multiple object features such as colour, pattern and 2D shape, but it remains unknown whether and how bees recover three-dimensional shape. Here we show that bees can recognize objects by their three-dimensional form, whereby they employ an active strategy to uncover the depth profiles. We trained individual, free flying honeybees to collect sugar water from small three-dimensional objects made of styrofoam (sphere, cylinder, cuboids) or folded paper (convex, concave, planar) and found that bees can easily discriminate between these stimuli. We also tested possible strategies employed by the bees to uncover the depth profiles. For the card stimuli, we excluded overall shape and pictorial features (shading, texture gradients) as cues for discrimination. Lacking sufficient stereo vision, bees are known to use speed gradients in optic flow to detect edges; could the bees apply this strategy also to recover the fine details of a surface depth profile? Analysing the bees' flight tracks in front of the stimuli revealed specific combinations of flight maneuvers (lateral translations in combination with yaw rotations), which are particularly suitable to extract depth cues from motion parallax. We modelled the generated optic flow and found characteristic patterns of angular displacement corresponding to the depth profiles of our stimuli: optic flow patterns from pure translations successfully recovered depth relations from the magnitude of angular displacements, additional rotation provided robust depth information based on the direction of the displacements; thus, the bees flight maneuvers may reflect an optimized visuo-motor strategy to extract depth structure from motion signals. The robustness and simplicity of this strategy offers an efficient solution for 3D-object-recognition without stereo vision, and could be employed by other flying insects, or mobile robots.

  6. Object Recognition in Flight: How Do Bees Distinguish between 3D Shapes?

    PubMed Central

    Werner, Annette; Stürzl, Wolfgang; Zanker, Johannes

    2016-01-01

    Honeybees (Apis mellifera) discriminate multiple object features such as colour, pattern and 2D shape, but it remains unknown whether and how bees recover three-dimensional shape. Here we show that bees can recognize objects by their three-dimensional form, whereby they employ an active strategy to uncover the depth profiles. We trained individual, free flying honeybees to collect sugar water from small three-dimensional objects made of styrofoam (sphere, cylinder, cuboids) or folded paper (convex, concave, planar) and found that bees can easily discriminate between these stimuli. We also tested possible strategies employed by the bees to uncover the depth profiles. For the card stimuli, we excluded overall shape and pictorial features (shading, texture gradients) as cues for discrimination. Lacking sufficient stereo vision, bees are known to use speed gradients in optic flow to detect edges; could the bees apply this strategy also to recover the fine details of a surface depth profile? Analysing the bees’ flight tracks in front of the stimuli revealed specific combinations of flight maneuvers (lateral translations in combination with yaw rotations), which are particularly suitable to extract depth cues from motion parallax. We modelled the generated optic flow and found characteristic patterns of angular displacement corresponding to the depth profiles of our stimuli: optic flow patterns from pure translations successfully recovered depth relations from the magnitude of angular displacements, additional rotation provided robust depth information based on the direction of the displacements; thus, the bees flight maneuvers may reflect an optimized visuo-motor strategy to extract depth structure from motion signals. The robustness and simplicity of this strategy offers an efficient solution for 3D-object-recognition without stereo vision, and could be employed by other flying insects, or mobile robots. PMID:26886006

  7. Interactive 3D segmentation of the prostate in magnetic resonance images using shape and local appearance similarity analysis

    NASA Astrophysics Data System (ADS)

    Shahedi, Maysam; Fenster, Aaron; Cool, Derek W.; Romagnoli, Cesare; Ward, Aaron D.

    2013-03-01

    3D segmentation of the prostate in medical images is useful to prostate cancer diagnosis and therapy guidance, but is time-consuming to perform manually. Clinical translation of computer-assisted segmentation algorithms for this purpose requires a comprehensive and complementary set of evaluation metrics that are informative to the clinical end user. We have developed an interactive 3D prostate segmentation method for 1.5T and 3.0T T2-weighted magnetic resonance imaging (T2W MRI) acquired using an endorectal coil. We evaluated our method against manual segmentations of 36 3D images using complementary boundary-based (mean absolute distance; MAD), regional overlap (Dice similarity coefficient; DSC) and volume difference (ΔV) metrics. Our technique is based on inter-subject prostate shape and local boundary appearance similarity. In the training phase, we calculated a point distribution model (PDM) and a set of local mean intensity patches centered on the prostate border to capture shape and appearance variability. To segment an unseen image, we defined a set of rays - one corresponding to each of the mean intensity patches computed in training - emanating from the prostate centre. We used a radial-based search strategy and translated each mean intensity patch along its corresponding ray, selecting as a candidate the boundary point with the highest normalized cross correlation along each ray. These boundary points were then regularized using the PDM. For the whole gland, we measured a mean+/-std MAD of 2.5+/-0.7 mm, DSC of 80+/-4%, and ΔV of 1.1+/-8.8 cc. We also provided an anatomic breakdown of these metrics within the prostatic base, mid-gland, and apex.

  8. Large-scale three-dimensional measurement via combining 3D scanner and laser rangefinder.

    PubMed

    Shi, Jinlong; Sun, Zhengxing; Bai, Suqin

    2015-04-01

    This paper presents a three-dimensional (3D) measurement method of large-scale objects by integrating a 3D scanner and a laser rangefinder. The 3D scanner, used to perform partial section measurement, is fixed on a robotic arm which can slide on a guide rail. The laser rangefinder, used to compute poses of the 3D scanner, is rigidly connected to the 3D scanner. During large-scale measurement, after measuring a partial section, the 3D scanner is straightly moved forward along the guide rail to measure another section. Meanwhile, the poses of the 3D scanner are estimated according to its moved distance for different partial section alignments. The performance and effectiveness are evaluated by experiments.

  9. 3D granulometry: grain-scale shape and size distribution from point cloud dataset of river environments

    NASA Astrophysics Data System (ADS)

    Steer, Philippe; Lague, Dimitri; Gourdon, Aurélie; Croissant, Thomas; Crave, Alain

    2016-04-01

    The grain-scale morphology of river sediments and their size distribution are important factors controlling the efficiency of fluvial erosion and transport. In turn, constraining the spatial evolution of these two metrics offer deep insights on the dynamics of river erosion and sediment transport from hillslopes to the sea. However, the size distribution of river sediments is generally assessed using statistically-biased field measurements and determining the grain-scale shape of river sediments remains a real challenge in geomorphology. Here we determine, with new methodological approaches based on the segmentation and geomorphological fitting of 3D point cloud dataset, the size distribution and grain-scale shape of sediments located in river environments. Point cloud segmentation is performed using either machine-learning algorithms or geometrical criterion, such as local plan fitting or curvature analysis. Once the grains are individualized into several sub-clouds, each grain-scale morphology is determined using a 3D geometrical fitting algorithm applied on the sub-cloud. If different geometrical models can be conceived and tested, only ellipsoidal models were used in this study. A phase of results checking is then performed to remove grains showing a best-fitting model with a low level of confidence. The main benefits of this automatic method are that it provides 1) an un-biased estimate of grain-size distribution on a large range of scales, from centimeter to tens of meters; 2) access to a very large number of data, only limited by the number of grains in the point-cloud dataset; 3) access to the 3D morphology of grains, in turn allowing to develop new metrics characterizing the size and shape of grains. The main limit of this method is that it is only able to detect grains with a characteristic size greater than the resolution of the point cloud. This new 3D granulometric method is then applied to river terraces both in the Poerua catchment in New-Zealand and

  10. Automatic 3D shape severity quantification and localization for deformational plagiocephaly

    NASA Astrophysics Data System (ADS)

    Atmosukarto, Indriyati; Shapiro, Linda G.; Cunningham, Michael L.; Speltz, Matthew

    2009-02-01

    Recent studies have shown an increase in the occurrence of deformational plagiocephaly and brachycephaly in children. This increase has coincided with the "Back to Sleep" campaign that was introduced to reduce the risk of Sudden Infant Death Syndrome (SIDS). However, there has yet to be an objective quantification of the degree of severity for these two conditions. Most diagnoses are done on subjective factors such as patient history and physician examination. The existence of an objective quantification would help research in areas of diagnosis and intervention measures, as well as provide a tool for finding correlation between the shape severity and cognitive outcome. This paper describes a new shape severity quantification and localization method for deformational plagiocephaly and brachycephaly. Our results show that there is a positive correlation between the new shape severity measure and the scores entered by a human expert.

  11. 3D laser measurements of bare and shod feet during walking.

    PubMed

    Novak, Boštjan; Možina, Janez; Jezeršek, Matija

    2014-01-01

    This article presents a new system for 3D foot-shape measurements during walking. It is based on the laser-triangulation, multiple-line-illumination and color-modulation techniques. It consists of a walking stage and four measuring modules that simultaneously acquire the foot shape from the top, bottom and side views. The measuring speed is 30 fps. Custom-developed software makes it possible to analyze the foot's dimensions at an arbitrary cross-section by means of the width, height, girth and section orientation. Six subjects were measured during bare and shod walking, and the bare foot and the outside dimensions of the footwear during the entire stance phase are presented. The relative measurement repeatability of a single subject is 0.5% for bare foot and 1% for shod foot. This means that it is possible to study the differences between various influences on the foot-shape dynamics, such as a bare/shod foot, different loading conditions and the shoe's stiffness condition.

  12. Computed tomography measurement of 3D combustion chemiluminescence using single camera

    NASA Astrophysics Data System (ADS)

    Wang, Kuanliang; Li, Fei; Zeng, Hui; Zhang, Shaohua; Yu, Xilong

    2016-10-01

    Instantaneous measurement of flame spatial structure has been long desired for complicated combustion condition (gas turbine, ramjet et.). Three dimensional computed tomography of chemiluminescence (3D-CTC) is a potential testing technology for its simplicity, low cost, high temporal and spatial resolution. In most former studies, multi-lens and multi-CCD are used to capture projects from different view angles. In order to improve adaptability, only one CCD was utilized to build 3D-CTC system combined with customized fiber-based endoscopes (FBEs). It makes this technique more economic and simple. Validate experiments were made using 10 small CH4 diffusion flame arranging in a ring structure. Based on one instantaneous image, computed tomography can be conducted using Algebraic Reconstruction Technique (ART) algorithm. The reconstructed results, including the flame number, ring shape of the flames, the inner and outer diameter of ring, all well match the physical structure. It indicates that 3D combustion chemiluminescence could be well reconstructed using single camera.

  13. General application of rapid 3-D digitizing and tool path generation for complex shapes

    SciTech Connect

    Kwok, K.S.; Loucks, C.S.; Driessen, B.J.

    1997-09-01

    A system for automatic tool path generation was developed at Sandia National Laboratories for finish machining operations. The system consists of a commercially available 5-axis milling machine controlled by Sandia developed software. This system was used to remove overspray on cast turbine blades. A laser-based, structured-light sensor, mounted on a tool holder, is used to collect 3D data points around the surface of the turbine blade. Using the digitized model of the blade, a tool path is generated which will drive a 0.375 inch grinding pin around the tip of the blade. A fuzzified digital filter was developed to properly eliminate false sensor readings caused by burrs, holes and overspray. The digital filter was found to successfully generate the correct tool path for a blade with intentionally scanned holes and defects. The fuzzified filter improved the computation efficiency by a factor of 25. For application to general parts, an adaptive scanning algorithm was developed and presented with simulation and experimental results. A right pyramid and an ellipsoid were scanned successfully with the adaptive algorithm in simulation studies. In actual experiments, a nose cone and a turbine blade were successfully scanned. A complex shaped turbine blade was successfully scanned and finished machined using these algorithms.

  14. KOALA: 3-D shape of asteroids from multi-data inversion

    NASA Astrophysics Data System (ADS)

    Carry, B.; Kaasalainen, M.; Merline, W. J.; Drummond, J. D.; Durech, J.; Berthier, J.; Conrad, A.

    2011-10-01

    We describe our on-going observing program to determine the physical properties of asteroids from groundbased facilities. We combine disk-resolved images from adaptive optics, optical lightcurves, and stellar occultations to put tighter constraints on the spin, 3-D shape, and size of asteroids. We will discuss the relevance of the determination of physical properties to help understand the asteroid population (e.g., density, composition, and non-gravitational forces). We will then briefly describe our multi-data inversion algorithm KOALA (Carry et al. 2010a, Kaasalainen 2011, see also Kaasalainen et al., same meeting), which allows the determination of certain physical properties of an asteroid from the combination of different techniques of observation. A comparison of results obtained with KOALA on asteroid (21) Lutetia, prior to the ESA Rosetta flyby, with the high spatial resolution images returned from that flyby, will then be presented, showing the high accuracy of KOALA inversion. Finally, we will describe our current development of the algorithm, and focus on examples of other asteroids currently being studied with KOALA.

  15. Disparity pattern-based autostereoscopic 3D metrology system for in situ measurement of microstructured surfaces.

    PubMed

    Li, Da; Cheung, Chi Fai; Ren, MingJun; Whitehouse, David; Zhao, Xing

    2015-11-15

    This paper presents a disparity pattern-based autostereoscopic (DPA) 3D metrology system that makes use of a microlens array to capture raw 3D information of the measured surface in a single snapshot through a CCD camera. Hence, a 3D digital model of the target surface with the measuring data is generated through a system-associated direct extraction of disparity information (DEDI) method. The DEDI method is highly efficient for performing the direct 3D mapping of the target surface based on tomography-like operation upon every depth plane with the defocused information excluded. Precise measurement results are provided through an error-elimination process based on statistical analysis. Experimental results show that the proposed DPA 3D metrology system is capable of measuring 3D microstructured surfaces with submicrometer measuring repeatability for high precision and in situ measurement of microstructured surfaces.

  16. Combining 3D optical imaging and dual energy absorptiometry to measure three compositional components.

    PubMed

    Malkov, Serghei; Shepherd, John

    2014-02-17

    We report on the design of the technique combining 3D optical imaging and dual-energy absorptiometry body scanning to estimate local body area compositions of three compartments. Dual-energy attenuation and body shape measures are used together to solve for the three compositional tissue thicknesses: water, lipid, and protein. We designed phantoms with tissue-like properties as our reference standards for calibration purposes. The calibration was created by fitting phantom values using non-linear regression of quadratic and truncated polynomials. Dual-energy measurements were performed on tissue-mimicking phantoms using a bone densitometer unit. The phantoms were made of materials shown to have similar x-ray attenuation properties of the biological compositional compartments. The components for the solid phantom were tested and their high energy/low energy attenuation ratios are in good correspondent to water, lipid, and protein for the densitometer x-ray region. The three-dimensional body shape was reconstructed from the depth maps generated by Microsoft Kinect for Windows. We used open-source Point Cloud Library and freeware software to produce dense point clouds. Accuracy and precision of compositional and thickness measures were calculated. The error contributions due to two modalities were estimated. The preliminary phantom composition and shape measurements are found to demonstrate the feasibility of the method proposed.

  17. Combining 3D optical imaging and dual energy absorptiometry to measure three compositional components

    PubMed Central

    Malkov, Serghei; Shepherd, John

    2014-01-01

    We report on the design of the technique combining 3D optical imaging and dual-energy absorptiometry body scanning to estimate local body area compositions of three compartments. Dual-energy attenuation and body shape measures are used together to solve for the three compositional tissue thicknesses: water, lipid, and protein. We designed phantoms with tissue-like properties as our reference standards for calibration purposes. The calibration was created by fitting phantom values using non-linear regression of quadratic and truncated polynomials. Dual-energy measurements were performed on tissue-mimicking phantoms using a bone densitometer unit. The phantoms were made of materials shown to have similar x-ray attenuation properties of the biological compositional compartments. The components for the solid phantom were tested and their high energy/low energy attenuation ratios are in good correspondent to water, lipid, and protein for the densitometer x-ray region. The three-dimensional body shape was reconstructed from the depth maps generated by Microsoft Kinect for Windows. We used open-source Point Cloud Library and freeware software to produce dense point clouds. Accuracy and precision of compositional and thickness measures were calculated. The error contributions due to two modalities were estimated. The preliminary phantom composition and shape measurements are found to demonstrate the feasibility of the method proposed. PMID:25083118

  18. Combining 3D optical imaging and dual energy absorptiometry to measure three compositional components

    NASA Astrophysics Data System (ADS)

    Malkov, Serghei; Shepherd, John

    2014-02-01

    We report on the design of the technique combining 3D optical imaging and dual-energy absorptiometry body scanning to estimate local body area compositions of three compartments. Dual-energy attenuation and body shape measures are used together to solve for the three compositional tissue thicknesses: water, lipid, and protein. We designed phantoms with tissue-like properties as our reference standards for calibration purposes. The calibration was created by fitting phantom values using non-linear regression of quadratic and truncated polynomials. Dual-energy measurements were performed on tissue-mimicking phantoms using a bone densitometer unit. The phantoms were made of materials shown to have similar x-ray attenuation properties of the biological compositional compartments. The components for the solid phantom were tested and their high energy/low energy attenuation ratios are in good correspondent to water, lipid, and protein for the densitometer x-ray region. The three-dimensional body shape was reconstructed from the depth maps generated by Microsoft Kinect for Windows. We used open-source Point Cloud Library and freeware software to produce dense point clouds. Accuracy and precision of compositional and thickness measures were calculated. The error contributions due to two modalities were estimated. The preliminary phantom composition and shape measurements are found to demonstrate the feasibility of the method proposed.

  19. Segmentation of densely populated cell nuclei from confocal image stacks using 3D non-parametric shape priors.

    PubMed

    Ong, Lee-Ling S; Wang, Mengmeng; Dauwels, Justin; Asada, H Harry

    2014-01-01

    An approach to jointly estimate 3D shapes and poses of stained nuclei from confocal microscopy images, using statistical prior information, is presented. Extracting nuclei boundaries from our experimental images of cell migration is challenging due to clustered nuclei and variations in their shapes. This issue is formulated as a maximum a posteriori estimation problem. By incorporating statistical prior models of 3D nuclei shapes into level set functions, the active contour evolutions applied on the images is constrained. A 3D alignment algorithm is developed to build the training databases and to match contours obtained from the images to them. To address the issue of aligning the model over multiple clustered nuclei, a watershed-like technique is used to detect and separate clustered regions prior to active contour evolution. Our method is tested on confocal images of endothelial cells in microfluidic devices, compared with existing approaches.

  20. Measuring Fracture Properties of Meteorites: 3D Scans and Disruption Experiments.

    NASA Astrophysics Data System (ADS)

    Cotto-Figueroa, Desireé; Asphaug, Erik; Morris, Melissa A.; Garvie, Laurence

    2014-11-01

    The Arizona State University (ASU) Center for Meteorite Studies (CMS) houses over 30,000 specimens that represent almost every known meteorite type. A number of these are available for fragmentation experiments in small samples, but in most cases non-destructive experiments are desired in order to determine the fundamental mechanical properties of meteorites, and by extension, the Near-Earth Asteroids (NEAs) and other planetary bodies they derive from. We present results from an ongoing suite of measurements and experiments, featuring automated 3D topographic scans of a comprehensive suite of meteorites in the CMS collection, basic mechanical studies, and culminating in catastrophic fragmentation of four representative meteorites: Tamdakht (H5), Allende (CV3), Northwest Africa 869 (L3-6) and Chelyabinsk (LL5). Results will include high-resolution 3D color-shape models of meteorites, including specimens such as the 349g oriented and fusion crusted Martian (shergottite) Tissint, and the delicately fusion crusted and oriented 131g Whetstone Mountains (H5) ordinary chondrite. The 3D color-shape models will allow us to obtain basic physical properties (such as volume to derive density) and to derive fractal dimensions of fractured surfaces. Fractal dimension is closely related to the internal structural heterogeneity and fragmentation of the material, to macroscopic optical properties, and to rubble friction and cohesion. Freshly fractured surfaces of fragments that will result from catastrophic hypervelocity impact experiments will be subsequently scanned and analyzed in order to determine whether fractal dimension is preserved or if it changes with surface maturation.

  1. Model-based measurement of food portion size for image-based dietary assessment using 3D/2D registration

    NASA Astrophysics Data System (ADS)

    Chen, Hsin-Chen; Jia, Wenyan; Yue, Yaofeng; Li, Zhaoxin; Sun, Yung-Nien; Fernstrom, John D.; Sun, Mingui

    2013-10-01

    Dietary assessment is important in health maintenance and intervention in many chronic conditions, such as obesity, diabetes and cardiovascular disease. However, there is currently a lack of convenient methods for measuring the volume of food (portion size) in real-life settings. We present a computational method to estimate food volume from a single photographic image of food contained on a typical dining plate. First, we calculate the food location with respect to a 3D camera coordinate system using the plate as a scale reference. Then, the food is segmented automatically from the background in the image. Adaptive thresholding and snake modeling are implemented based on several image features, such as color contrast, regional color homogeneity and curve bending degree. Next, a 3D model representing the general shape of the food (e.g., a cylinder, a sphere, etc) is selected from a pre-constructed shape model library. The position, orientation and scale of the selected shape model are determined by registering the projected 3D model and the food contour in the image, where the properties of the reference are used as constraints. Experimental results using various realistically shaped foods with known volumes demonstrated satisfactory performance of our image-based food volume measurement method even if the 3D geometric surface of the food is not completely represented in the input image.

  2. Model-based measurement of food portion size for image-based dietary assessment using 3D/2D registration

    PubMed Central

    Chen, Hsin-Chen; Jia, Wenyan; Yue, Yaofeng; Li, Zhaoxin; Sun, Yung-Nien; Fernstrom, John D.; Sun, Mingui

    2013-01-01

    Dietary assessment is important in health maintenance and intervention in many chronic conditions, such as obesity, diabetes, and cardiovascular disease. However, there is currently a lack of convenient methods for measuring the volume of food (portion size) in real-life settings. We present a computational method to estimate food volume from a single photographical image of food contained in a typical dining plate. First, we calculate the food location with respect to a 3D camera coordinate system using the plate as a scale reference. Then, the food is segmented automatically from the background in the image. Adaptive thresholding and snake modeling are implemented based on several image features, such as color contrast, regional color homogeneity and curve bending degree. Next, a 3D model representing the general shape of the food (e.g., a cylinder, a sphere, etc.) is selected from a pre-constructed shape model library. The position, orientation and scale of the selected shape model are determined by registering the projected 3D model and the food contour in the image, where the properties of the reference are used as constraints. Experimental results using various realistically shaped foods with known volumes demonstrated satisfactory performance of our image based food volume measurement method even if the 3D geometric surface of the food is not completely represented in the input image. PMID:24223474

  3. Model-based measurement of food portion size for image-based dietary assessment using 3D/2D registration.

    PubMed

    Chen, Hsin-Chen; Jia, Wenyan; Yue, Yaofeng; Li, Zhaoxin; Sun, Yung-Nien; Fernstrom, John D; Sun, Mingui

    2013-10-01

    Dietary assessment is important in health maintenance and intervention in many chronic conditions, such as obesity, diabetes, and cardiovascular disease. However, there is currently a lack of convenient methods for measuring the volume of food (portion size) in real-life settings. We present a computational method to estimate food volume from a single photographical image of food contained in a typical dining plate. First, we calculate the food location with respect to a 3D camera coordinate system using the plate as a scale reference. Then, the food is segmented automatically from the background in the image. Adaptive thresholding and snake modeling are implemented based on several image features, such as color contrast, regional color homogeneity and curve bending degree. Next, a 3D model representing the general shape of the food (e.g., a cylinder, a sphere, etc.) is selected from a pre-constructed shape model library. The position, orientation and scale of the selected shape model are determined by registering the projected 3D model and the food contour in the image, where the properties of the reference are used as constraints. Experimental results using various realistically shaped foods with known volumes demonstrated satisfactory performance of our image based food volume measurement method even if the 3D geometric surface of the food is not completely represented in the input image.

  4. Validation of 3-D Ice Accretion Measurement Methodology for Experimental Aerodynamic Simulation

    NASA Technical Reports Server (NTRS)

    Broeren, Andy P.; Addy, Harold E., Jr.; Lee, Sam; Monastero, Marianne C.

    2015-01-01

    Determining the adverse aerodynamic effects due to ice accretion often relies on dry-air wind-tunnel testing of artificial, or simulated, ice shapes. Recent developments in ice-accretion documentation methods have yielded a laser-scanning capability that can measure highly three-dimensional (3-D) features of ice accreted in icing wind tunnels. The objective of this paper was to evaluate the aerodynamic accuracy of ice-accretion simulations generated from laser-scan data. Ice-accretion tests were conducted in the NASA Icing Research Tunnel using an 18-in. chord, two-dimensional (2-D) straight wing with NACA 23012 airfoil section. For six ice-accretion cases, a 3-D laser scan was performed to document the ice geometry prior to the molding process. Aerodynamic performance testing was conducted at the University of Illinois low-speed wind tunnel at a Reynolds number of 1.8 × 10(exp 6) and a Mach number of 0.18 with an 18-in. chord NACA 23012 airfoil model that was designed to accommodate the artificial ice shapes. The ice-accretion molds were used to fabricate one set of artificial ice shapes from polyurethane castings. The laser-scan data were used to fabricate another set of artificial ice shapes using rapid prototype manufacturing such as stereolithography. The iced-airfoil results with both sets of artificial ice shapes were compared to evaluate the aerodynamic simulation accuracy of the laser-scan data. For five of the six ice-accretion cases, there was excellent agreement in the iced-airfoil aerodynamic performance between the casting and laser-scan based simulations. For example, typical differences in iced-airfoil maximum lift coefficient were less than 3 percent with corresponding differences in stall angle of approximately 1 deg or less. The aerodynamic simulation accuracy reported in this paper has demonstrated the combined accuracy of the laser-scan and rapid-prototype manufacturing approach to simulating ice accretion for a NACA 23012 airfoil. For several

  5. 3D bone mineral density distribution and shape reconstruction of the proximal femur from a single simulated DXA image: an in vitro study

    NASA Astrophysics Data System (ADS)

    Whitmarsh, Tristan; Humbert, Ludovic; De Craene, Mathieu; del Río Barquero, Luis M.; Fritscher, Karl; Schubert, Rainer; Eckstein, Felix; Link, Thomas; Frangi, Alejandro F.

    2010-03-01

    Area Bone Mineral Density (aBMD) measured by Dual-energy X-ray Absorptiometry (DXA) is an established criterion in the evaluation of hip fracture risk. The evaluation from these planar images, however, is limited to 2D while it has been shown that proper 3D assessment of both the shape and the Bone Mineral Density (BMD) distribution improves the fracture risk estimation. In this work we present a method to reconstruct both the 3D bone shape and 3D BMD distribution of the proximal femur from a single DXA image. A statistical model of shape and a separate statistical model of the BMD distribution were automatically constructed from a set of Quantitative Computed Tomography (QCT) scans. The reconstruction method incorporates a fully automatic intensity based 3D-2D registration process, maximizing the similarity between the DXA and a digitally reconstructed radiograph of the combined model. For the construction of the models, an in vitro dataset of QCT scans of 60 anatomical specimens was used. To evaluate the reconstruction accuracy, experiments were performed on simulated DXA images from the QCT scans of 30 anatomical specimens. Comparisons between the reconstructions and the same subject QCT scans showed a mean shape accuracy of 1.2mm, and a mean density error of 81mg/cm3. The results show that this method is capable of accurately reconstructing both the 3D shape and 3D BMD distribution of the proximal femur from DXA images used in clinical routine, potentially improving the diagnosis of osteoporosis and fracture risk assessments at a low radiation dose and low cost.

  6. Real-time 3D vibration measurements in microstructures

    NASA Astrophysics Data System (ADS)

    Kowarsch, Robert; Ochs, Wanja; Giesen, Moritz; Dräbenstedt, Alexander; Winter, Marcus; Rembe, Christian

    2012-04-01

    The real-time measurement of three-dimensional vibrations is currently a major interest of academic research and industrial device characterization. The most common and practical solution used so far consists of three single-point laser-Doppler vibrometers which measure vibrations of a scattering surface from three directions. The resulting three velocity vectors are transformed into a Cartesian coordinate system. This technique does also work for microstructures but has some drawbacks: (1) The surface needs to scatter light, (2) the three laser beams can generate optical crosstalk if at least two laser frequencies match within the demodulation bandwidth, and (3) the laser beams have to be separated on the surface under test to minimize optical crosstalk such that reliable measurements are possible. We present a novel optical approach, based on the direction-dependent Doppler effect, which overcomes all the drawbacks of the current technology. We have realized a demonstrator with a measurement spot of < 3.5 μm diameter that does not suffer from optical crosstalk because only one laser beam impinges the specimen surface while the light is collected from three different directions.

  7. Accuracy of volume measurement using 3D ultrasound and development of CT-3D US image fusion algorithm for prostate cancer radiotherapy

    SciTech Connect

    Baek, Jihye; Huh, Jangyoung; Hyun An, So; Oh, Yoonjin; Kim, Myungsoo; Kim, DongYoung; Chung, Kwangzoo; Cho, Sungho; Lee, Rena

    2013-02-15

    Purpose: To evaluate the accuracy of measuring volumes using three-dimensional ultrasound (3D US), and to verify the feasibility of the replacement of CT-MR fusion images with CT-3D US in radiotherapy treatment planning. Methods: Phantoms, consisting of water, contrast agent, and agarose, were manufactured. The volume was measured using 3D US, CT, and MR devices. A CT-3D US and MR-3D US image fusion software was developed using the Insight Toolkit library in order to acquire three-dimensional fusion images. The quality of the image fusion was evaluated using metric value and fusion images. Results: Volume measurement, using 3D US, shows a 2.8 {+-} 1.5% error, 4.4 {+-} 3.0% error for CT, and 3.1 {+-} 2.0% error for MR. The results imply that volume measurement using the 3D US devices has a similar accuracy level to that of CT and MR. Three-dimensional image fusion of CT-3D US and MR-3D US was successfully performed using phantom images. Moreover, MR-3D US image fusion was performed using human bladder images. Conclusions: 3D US could be used in the volume measurement of human bladders and prostates. CT-3D US image fusion could be used in monitoring the target position in each fraction of external beam radiation therapy. Moreover, the feasibility of replacing the CT-MR image fusion to the CT-3D US in radiotherapy treatment planning was verified.

  8. Wind Turbine Wake Characterization from Temporally Disjunct 3-D Measurements

    SciTech Connect

    Doubrawa, Paula; Barthelmie, Rebecca J.; Wang, Hui; Pryor, S. C.; Churchfield, Matthew

    2016-11-01

    Scanning LiDARs can be used to obtain three-dimensional wind measurements in and beyond the atmospheric surface layer. In this work, metrics characterizing wind turbine wakes are derived from LiDAR observations and from large-eddy simulation (LES) data, which are used to recreate the LiDAR scanning geometry. The metrics are calculated for two-dimensional planes in the vertical and cross-stream directions at discrete distances downstream of a turbine under single-wake conditions. The simulation data are used to estimate the uncertainty when mean wake characteristics are quantified from scanning LiDAR measurements, which are temporally disjunct due to the time that the instrument takes to probe a large volume of air. Based on LES output, we determine that wind speeds sampled with the synthetic LiDAR are within 10% of the actual mean values and that the disjunct nature of the scan does not compromise the spatial variation of wind speeds within the planes. We propose scanning geometry density and coverage indices, which quantify the spatial distribution of the sampled points in the area of interest and are valuable to design LiDAR measurement campaigns for wake characterization. We find that scanning geometry coverage is important for estimates of the wake center, orientation and length scales, while density is more important when seeking to characterize the velocity deficit distribution.

  9. Measuring heterogenous stress fields in a 3D colloidal glass

    NASA Astrophysics Data System (ADS)

    Lin, Neil; Bierbaum, Matthew; Bi, Max; Sethna, James; Cohen, Itai

    Glass in our common experience is hard and fragile. But it still bends, yields, and flows slowly under loads. The yielding of glass, a well documented yet not fully understood flow behavior, is governed by the heterogenous local stresses in the material. While resolving stresses at the atomic scale is not feasible, measurements of stresses at the single particle level in colloidal glasses, a widely used model system for atomic glasses, has recently been made possible using Stress Assessment from Local Structural Anisotropy (SALSA). In this work, we use SALSA to visualize the three dimensional stress network in a hard-sphere glass during start-up shear. By measuring the evolution of this stress network we identify local-yielding. We find that these local-yielding events often require only minimal structural rearrangement and as such have most likely been ignored in previous analyses. We then relate these micro-scale yielding events to the macro-scale flow behavior observed using bulk measurements.

  10. 3-D Measurement of Recycling and Radiation in MST

    NASA Astrophysics Data System (ADS)

    Norval, Ryan; Goetz, John; Schmitz, Oliver

    2016-10-01

    The MST reversed-field pinch (RFP) can undergo spontaneous transition to a helical core state, associated with the growth of the innermost resonant magnetic mode. Currently multiple 2-D imaging cameras are in place allowing for nearly full vessel viewing and measurement of recycling and impurities fluxes. The transition from the standard to helical RFP causes an observable change in edge plasma. While in the helical state the plasma wall interaction (PWI) on MSTs poloidal limiter strongly correlates with the helicity of the core mode. PWI on the toroidal limiter overall is reduced, with the remaining PWI sites corresponding the helicity of the core mode, or the locations of diagnostic limiters and the error fields they create. EIRENE, a neutral particle code use for modeling edge plasmas, is used to compute the neutral profiles based on measured recycling fluxes. EIRENE computes the radiative and charge exchange power losses. Comparison is made between the standard and helical RFP plasmas. Bolometer measurements of total radiation are currently in progress to supplement the modeling. This work is supported by the U.S. Department of Energy.

  11. Wind turbine wake characterization from temporally disjunct 3-D measurements

    SciTech Connect

    Doubrawa, Paula; Barthelmie, Rebecca J.; Wang, Hui; Pryor, S. C.; Churchfield, Matthew

    2016-11-10

    Scanning LiDARs can be used to obtain three-dimensional wind measurements in and beyond the atmospheric surface layer. In this work, metrics characterizing wind turbine wakes are derived from LiDAR observations and from large-eddy simulation (LES) data, which are used to recreate the LiDAR scanning geometry. The metrics are calculated for two-dimensional planes in the vertical and cross-stream directions at discrete distances downstream of a turbine under single-wake conditions. The simulation data are used to estimate the uncertainty when mean wake characteristics are quantified from scanning LiDAR measurements, which are temporally disjunct due to the time that the instrument takes to probe a large volume of air. Based on LES output, we determine that wind speeds sampled with the synthetic LiDAR are within 10% of the actual mean values and that the disjunct nature of the scan does not compromise the spatial variation of wind speeds within the planes. We propose scanning geometry density and coverage indices, which quantify the spatial distribution of the sampled points in the area of interest and are valuable to design LiDAR measurement campaigns for wake characterization. Lastly, we find that scanning geometry coverage is important for estimates of the wake center, orientation and length scales, while density is more important when seeking to characterize the velocity deficit distribution.

  12. Wind turbine wake characterization from temporally disjunct 3-D measurements

    DOE PAGES

    Doubrawa, Paula; Barthelmie, Rebecca J.; Wang, Hui; ...

    2016-11-10

    Scanning LiDARs can be used to obtain three-dimensional wind measurements in and beyond the atmospheric surface layer. In this work, metrics characterizing wind turbine wakes are derived from LiDAR observations and from large-eddy simulation (LES) data, which are used to recreate the LiDAR scanning geometry. The metrics are calculated for two-dimensional planes in the vertical and cross-stream directions at discrete distances downstream of a turbine under single-wake conditions. The simulation data are used to estimate the uncertainty when mean wake characteristics are quantified from scanning LiDAR measurements, which are temporally disjunct due to the time that the instrument takes tomore » probe a large volume of air. Based on LES output, we determine that wind speeds sampled with the synthetic LiDAR are within 10% of the actual mean values and that the disjunct nature of the scan does not compromise the spatial variation of wind speeds within the planes. We propose scanning geometry density and coverage indices, which quantify the spatial distribution of the sampled points in the area of interest and are valuable to design LiDAR measurement campaigns for wake characterization. Lastly, we find that scanning geometry coverage is important for estimates of the wake center, orientation and length scales, while density is more important when seeking to characterize the velocity deficit distribution.« less

  13. 1d, 2d, and 3d periodic structures: Electromagnetic characterization, design, and measurement

    NASA Astrophysics Data System (ADS)

    Brockett, Timothy John

    Periodic structures have many useful applications in electromagnetics including phased arrays, frequency selective surfaces, and absorbing interfaces. Their unique properties can be used to provide increased performance in antenna gain, electromagnetic propagation, and electromagnetic absorption. In antenna arrays, repeating elements create a larger eective aperture, increasing the gain of the antenna and the ability to scan the direction of the main beam. Three-dimensional periodic structures, such as an array of shaped pillars such as columns, cones, or prisms have the potential of improving electromagnetic absorption, improving performance in applications such as solar cell eciency and absorbing interfaces. Furthermore, research into periodic structures is a continuing endeavor where novel approaches and analysis in appropriate applications can be sought. This dissertation will address the analysis, diagnostics, and enhancement of 1D, 2D, and 3D periodic structures for antenna array applications and solar cell technology. In particular, a unique approach to array design will be introduced to prevent the appearance of undesirable grating lobes in large antenna arrays that employ subarrays. This approach, named the distortion diagnostic procedure, can apply directly to 1D and 2D periodic structures in the form of planar antenna arrays. Interesting corollaries included here are developments in millimeter-wave antenna measurements including spiral planar scanning, phaseless measurements, and addressing antennas that feature an internal source. Finally, analysis and enhancement of 3D periodic structures in nanostructure photovoltaic arrays and absorbing interfaces will be examined for their behavior and basic operation in regards to improved absorption of electromagnetic waves.

  14. Fish body surface data measurement based on 3D digital image correlation

    NASA Astrophysics Data System (ADS)

    Jiang, Ming; Qian, Chen; Yang, Wenkai

    2016-01-01

    To film the moving fish in the glass tank, light will be bent at the interface of air and glass, glass and water. Based on binocular stereo vision and refraction principle, we establish a mathematical model of 3D image correlation to reconstruct the 3D coordinates of samples in the water. Marking speckle in fish surface, a series of real-time speckle images of swimming fish will be obtained by two high-speed cameras, and instantaneous 3D shape, strain, displacement etc. of fish will be reconstructed.

  15. Abdominal aortic aneurysm imaging with 3-D ultrasound: 3-D-based maximum diameter measurement and volume quantification.

    PubMed

    Long, A; Rouet, L; Debreuve, A; Ardon, R; Barbe, C; Becquemin, J P; Allaire, E

    2013-08-01

    The clinical reliability of 3-D ultrasound imaging (3-DUS) in quantification of abdominal aortic aneurysm (AAA) was evaluated. B-mode and 3-DUS images of AAAs were acquired for 42 patients. AAAs were segmented. A 3-D-based maximum diameter (Max3-D) and partial volume (Vol30) were defined and quantified. Comparisons between 2-D (Max2-D) and 3-D diameters and between orthogonal acquisitions were performed. Intra- and inter-observer reproducibility was evaluated. Intra- and inter-observer coefficients of repeatability (CRs) were less than 5.18 mm for Max3-D. Intra-observer and inter-observer CRs were respectively less than 6.16 and 8.71 mL for Vol30. The mean of normalized errors of Vol30 was around 7%. Correlation between Max2-D and Max3-D was 0.988 (p < 0.0001). Max3-D and Vol30 were not influenced by a probe rotation of 90°. Use of 3-DUS to quantify AAA is a new approach in clinical practice. The present study proposed and evaluated dedicated parameters. Their reproducibility makes the technique clinically reliable.

  16. Face recognition using 3D facial shape and color map information: comparison and combination

    NASA Astrophysics Data System (ADS)

    Godil, Afzal; Ressler, Sandy; Grother, Patrick

    2004-08-01

    In this paper, we investigate the use of 3D surface geometry for face recognition and compare it to one based on color map information. The 3D surface and color map data are from the CAESAR anthropometric database. We find that the recognition performance is not very different between 3D surface and color map information using a principal component analysis algorithm. We also discuss the different techniques for the combination of the 3D surface and color map information for multi-modal recognition by using different fusion approaches and show that there is significant improvement in results. The effectiveness of various techniques is compared and evaluated on a dataset with 200 subjects in two different positions.

  17. YieldStar based reticle 3D measurements and its application

    NASA Astrophysics Data System (ADS)

    Vaenkatesan, Vidya; Finders, Jo; ten Berge, Peter; Plug, Reinder; Sijben, Anko; Schellekens, Twan; Dillen, Harm; Pocobiej, Wojciech; Jorge, Vasco G.; van Dijck, Jurgen

    2016-09-01

    YieldStar (YS) is an established ASML-built scatterometer that is capable of measuring wafer Critical Dimension (CD), Overlay and Focus. In a recent work, the application range of YS was extended to measure 3D CD patterns on a reticle (pattern CD, height, Side Wall Angle-SWA). The primary motivation for this study came from imaging studies that indicated a need for measuring and controlling reticle 3D topography. CD scanning electron microscope (CD-SEM), Atomic force microscope (AFM), 3D multiple detector SEM (3D-SEM) are the preferred tools for reticle metrology. While these tools serve the industry well, the current research to the impact of reticle 3D involves extensive costs, logistic challenges and increased reticle lead time. YS provides an attractive alternative as it can measure pattern CD, SWA and height in a single measurement and at high throughput. This work demonstrates the capability of YS as a reticle metrology tool.

  18. Ozone Measurements and a 3D Chemical Transport Model

    NASA Technical Reports Server (NTRS)

    Stolarski, Richard S.; Douglass, Anne R.; Frith, Stacey; Steenrod, Steven; Polansky, Brian

    2004-01-01

    We have used our three-dimensional chemical transport model (CTM) to calculate the expected reponse of stratospheric composition over the past 30 years to forcing by chlorine and bromine compounds, solar ultraviolet, and volcanic aerosols. The CTM uses off-line winds and temperatures fiom a 50-year run of the finite volume general circulation model (FVGCM). We compare the total column ozone and the ozone profile fiom the CTM output to a variety of data sources. These include a merged total ozone data set from TOMS and SBUV using the new version 8 algorithm. Total ozone fiom the CTM are compared to ground-station measurements of total ozone at specific locations. Ozone profiles are compared to satellite meausrements fiom SBUV, SAGE, and HALOE. Profiles are also compared to ozonesondes over several locations. The results of the comparisons are quantified by using a time-series statistical analysis to determine trends, solar cycle, and volcanic reponse in both the model and in the data. Initial results indicate that the model responds to forcings in a way that is similar to the observed atmospheric response. The model does seem to be more sensitive to the chlorine and bromine perturbation ihan is the data. Further details and comparisons wiii be discussed.

  19. Local 3D matrix confinement determines division axis through cell shape.

    PubMed

    He, Lijuan; Chen, Weitong; Wu, Pei-Hsun; Jimenez, Angela; Wong, Bin Sheng; San, Angela; Konstantopoulos, Konstantinos; Wirtz, Denis

    2016-02-09

    How the division axis is determined in mammalian cells embedded in three-dimensional (3D) matrices remains elusive, despite that many types of cells divide in 3D environments. Cells on two-dimensional (2D) substrates typically round up completely to divide. Here, we show that in 3D collagen matrices, mammalian cells such as HT1080 human fibrosarcoma and MDA-MB-231 breast cancer cells exhibit division modes distinct from their Counterparts on 2D substrates, with a markedly higher fraction of cells remaining highly elongated through mitosis in 3D matrices. The long axis of elongated mitotic cells accurately predicts the division axis, independently of matrix density and cell-matrix interactions. This 3D-specific elongated division mode is determined by the local confinement produced by the matrix and the ability of cells to protrude and locally remodel the matrix via β1 integrin. Elongated division is readily recapitulated using collagen-coated microfabricated channels. Cells depleted of β1 integrin still divide in the elongated mode in microchannels, suggesting that 3D confinement is sufficient to induce the elongated cell-division phenotype.

  20. Interfacing 3D micro/nanochannels with a branch-shaped reservoir enhances fluid and mass transport

    NASA Astrophysics Data System (ADS)

    Kumar, Prasoon; Gandhi, Prasanna S.; Majumder, Mainak

    2017-01-01

    Three-dimensional (3D) micro/nanofluidic devices can accelerate progress in numerous fields such as tissue engineering, drug delivery, self-healing and cooling devices. However, efficient connections between networks of micro/nanochannels and external fluidic ports are key to successful applications of 3D micro/nanofluidic devices. Therefore, in this work, the extent of the role of reservoir geometry in interfacing with vascular (micro/nanochannel) networks, and in the enabling of connections with external fluidic ports while maintaining the compactness of devices, has been experimentally and theoretically investigated. A statistical modelling suggested that a branch-shaped reservoir demonstrates enhanced interfacing with vascular networks when compared to other regular geometries of reservoirs. Time-lapse dye flow experiments by capillary action through fabricated 3D micro/nanofluidic devices confirmed the connectivity of branch-shaped reservoirs with micro/nanochannel networks in fluidic devices. This demonstrated a ~2.2-fold enhancement of the volumetric flow rate in micro/nanofluidic networks when interfaced to branch-shaped reservoirs over rectangular reservoirs. The enhancement is due to a ~2.8-fold increase in the perimeter of the reservoirs. In addition, the mass transfer experiments exhibited a ~1.7-fold enhancement in solute flux across 3D micro/nanofluidic devices that interfaced with branch-shaped reservoirs when compared to rectangular reservoirs. The fabrication of 3D micro/nanofluidic devices and their efficient interfacing through branch-shaped reservoirs to an external fluidic port can potentially enable their use in complex applications, in which enhanced surface-to-volume interactions are desirable.

  1. Automated detection, 3D segmentation and analysis of high resolution spine MR images using statistical shape models

    NASA Astrophysics Data System (ADS)

    Neubert, A.; Fripp, J.; Engstrom, C.; Schwarz, R.; Lauer, L.; Salvado, O.; Crozier, S.

    2012-12-01

    Recent advances in high resolution magnetic resonance (MR) imaging of the spine provide a basis for the automated assessment of intervertebral disc (IVD) and vertebral body (VB) anatomy. High resolution three-dimensional (3D) morphological information contained in these images may be useful for early detection and monitoring of common spine disorders, such as disc degeneration. This work proposes an automated approach to extract the 3D segmentations of lumbar and thoracic IVDs and VBs from MR images using statistical shape analysis and registration of grey level intensity profiles. The algorithm was validated on a dataset of volumetric scans of the thoracolumbar spine of asymptomatic volunteers obtained on a 3T scanner using the relatively new 3D T2-weighted SPACE pulse sequence. Manual segmentations and expert radiological findings of early signs of disc degeneration were used in the validation. There was good agreement between manual and automated segmentation of the IVD and VB volumes with the mean Dice scores of 0.89 ± 0.04 and 0.91 ± 0.02 and mean absolute surface distances of 0.55 ± 0.18 mm and 0.67 ± 0.17 mm respectively. The method compares favourably to existing 3D MR segmentation techniques for VBs. This is the first time IVDs have been automatically segmented from 3D volumetric scans and shape parameters obtained were used in preliminary analyses to accurately classify (100% sensitivity, 98.3% specificity) disc abnormalities associated with early degenerative changes.

  2. 3D active shape models of human brain structures: application to patient-specific mesh generation

    NASA Astrophysics Data System (ADS)

    Ravikumar, Nishant; Castro-Mateos, Isaac; Pozo, Jose M.; Frangi, Alejandro F.; Taylor, Zeike A.

    2015-03-01

    The use of biomechanics-based numerical simulations has attracted growing interest in recent years for computer-aided diagnosis and treatment planning. With this in mind, a method for automatic mesh generation of brain structures of interest, using statistical models of shape (SSM) and appearance (SAM), for personalised computational modelling is presented. SSMs are constructed as point distribution models (PDMs) while SAMs are trained using intensity profiles sampled from a training set of T1-weighted magnetic resonance images. The brain structures of interest are, the cortical surface (cerebrum, cerebellum & brainstem), lateral ventricles and falx-cerebri membrane. Two methods for establishing correspondences across the training set of shapes are investigated and compared (based on SSM quality): the Coherent Point Drift (CPD) point-set registration method and B-spline mesh-to-mesh registration method. The MNI-305 (Montreal Neurological Institute) average brain atlas is used to generate the template mesh, which is deformed and registered to each training case, to establish correspondence over the training set of shapes. 18 healthy patients' T1-weightedMRimages form the training set used to generate the SSM and SAM. Both model-training and model-fitting are performed over multiple brain structures simultaneously. Compactness and generalisation errors of the BSpline-SSM and CPD-SSM are evaluated and used to quantitatively compare the SSMs. Leave-one-out cross validation is used to evaluate SSM quality in terms of these measures. The mesh-based SSM is found to generalise better and is more compact, relative to the CPD-based SSM. Quality of the best-fit model instance from the trained SSMs, to test cases are evaluated using the Hausdorff distance (HD) and mean absolute surface distance (MASD) metrics.

  3. Reversible-strain criteria of ferromagnetic shape memory alloys under cyclic 3D magneto-mechanical loadings

    NASA Astrophysics Data System (ADS)

    He, Y. J.; Chen, X.; Moumni, Z.

    2012-08-01

    Recent researches revealed that ferromagnetic shape memory alloys (FSMA) in 2D/3D configurations (with multi-axial stresses) had much more advantages (e.g., higher working stress and more application flexibility) than that in 1D configuration (with uniaxial stress). In literature, however, there is no simple criterion to judge whether a cyclic 3D magneto-mechanical loading can induce a large reversible strain (via martensite reorientation in FSMA). In this paper, a 3D magneto-mechanical energy analysis is proposed and incorporated into a phase diagram in terms of deviatoric stresses (including mechanical and magneto-stresses) to study the path-dependent (hysteretic) martensite reorientation in FSMA under 3D cyclic loadings. Based on the phase diagram (a plane graph), general criteria for obtaining reversible strain under cyclic magneto-mechanical loadings are derived, which provide basic guidelines for FSMA's applications under multi-axial loadings. Particularly for FSMA actuators driven by cyclic magnetic fields, the criteria of setting the 3D mechanical stresses to allow field-induced reversible strain are formulated. The 3D criteria can be reduced to 1D and 2D criteria which agree with the existing 1D/2D theoretical and experimental studies.

  4. Spherical blurred shape model for 3-D object and pose recognition: quantitative analysis and HCI applications in smart environments.

    PubMed

    Lopes, Oscar; Reyes, Miguel; Escalera, Sergio; Gonzàlez, Jordi

    2014-12-01

    The use of depth maps is of increasing interest after the advent of cheap multisensor devices based on structured light, such as Kinect. In this context, there is a strong need of powerful 3-D shape descriptors able to generate rich object representations. Although several 3-D descriptors have been already proposed in the literature, the research of discriminative and computationally efficient descriptors is still an open issue. In this paper, we propose a novel point cloud descriptor called spherical blurred shape model (SBSM) that successfully encodes the structure density and local variabilities of an object based on shape voxel distances and a neighborhood propagation strategy. The proposed SBSM is proven to be rotation and scale invariant, robust to noise and occlusions, highly discriminative for multiple categories of complex objects like the human hand, and computationally efficient since the SBSM complexity is linear to the number of object voxels. Experimental evaluation in public depth multiclass object data, 3-D facial expressions data, and a novel hand poses data sets show significant performance improvements in relation to state-of-the-art approaches. Moreover, the effectiveness of the proposal is also proved for object spotting in 3-D scenes and for real-time automatic hand pose recognition in human computer interaction scenarios.

  5. Dynamic shape modeling of the mitral valve from real-time 3D ultrasound images using continuous medial representation

    NASA Astrophysics Data System (ADS)

    Pouch, Alison M.; Yushkevich, Paul A.; Jackson, Benjamin M.; Gorman, Joseph H., III; Gorman, Robert C.; Sehgal, Chandra M.

    2012-03-01

    Purpose: Patient-specific shape analysis of the mitral valve from real-time 3D ultrasound (rt-3DUS) has broad application to the assessment and surgical treatment of mitral valve disease. Our goal is to demonstrate that continuous medial representation (cm-rep) is an accurate valve shape representation that can be used for statistical shape modeling over the cardiac cycle from rt-3DUS images. Methods: Transesophageal rt-3DUS data acquired from 15 subjects with a range of mitral valve pathology were analyzed. User-initialized segmentation with level sets and symmetric diffeomorphic normalization delineated the mitral leaflets at each time point in the rt-3DUS data series. A deformable cm-rep was fitted to each segmented image of the mitral leaflets in the time series, producing a 4D parametric representation of valve shape in a single cardiac cycle. Model fitting accuracy was evaluated by the Dice overlap, and shape interpolation and principal component analysis (PCA) of 4D valve shape were performed. Results: Of the 289 3D images analyzed, the average Dice overlap between each fitted cm-rep and its target segmentation was 0.880+/-0.018 (max=0.912, min=0.819). The results of PCA represented variability in valve morphology and localized leaflet thickness across subjects. Conclusion: Deformable medial modeling accurately captures valve geometry in rt-3DUS images over the entire cardiac cycle and enables statistical shape analysis of the mitral valve.

  6. A C-Shaped Canal in a Maxillary Second Molar: Prexion 3D Cone-Beam Computed Tomography Analysis

    PubMed Central

    Lopes, Daniela Siqueira; Câmara, Andréa Cruz; do Nascimento, Monikelly do Carmo Chagas; Farias de Araújo, Luciane

    2016-01-01

    Objective: The aim of this study was to present an atypical case of a C-shaped root canal that was present in the vestibular root of a permanent maxillary second molar using PreXion 3-D cone-beam computed tomography (CBCT) as a diagnostic device. Materials and Methods: A 50-year-old female patient was referred for routine examination to a private diagnostic imaging clinic in Recife-Pernambuco. During the physical examination, the presence of an unusual C-shaped anatomy in the vestibular canal with a mesiodistal interconnection that extended from the apical to the cervical third was detected in axial slices acquired with a PreXion 3-D scanner. Results: Although C-shaped root canals are most frequently observed in the mandibular second molar, this case presented a rare finding in the permanent maxillary second molar. Conclusions: PreXion 3-D CBCT has emerged as a new high-resolution imaging test technology, thus assisting with the diagnosis of anatomical variations such as C-shaped root canals. However, such imaging technology is not recommended for routine use. PMID:28275283

  7. Application of optical 3D measurement on thin film buckling to estimate interfacial toughness

    NASA Astrophysics Data System (ADS)

    Jia, H. K.; Wang, S. B.; Li, L. A.; Wang, Z. Y.; Goudeau, P.

    2014-03-01

    The shape-from-focus (SFF) method has been widely studied as a passive depth recovery and 3D reconstruction method for digital images. An important step in SFF is the calculation of the focus level for different points in an image by using a focus measure. In this work, an image entropy-based focus measure is introduced into the SFF method to measure the 3D buckling morphology of an aluminum film on a polymethylmethacrylate (PMMA) substrate at a micro scale. Spontaneous film wrinkles and telephone-cord wrinkles are investigated after the deposition of a 300 nm thick aluminum film onto the PMMA substrate. Spontaneous buckling is driven by the highly compressive stress generated in the Al film during the deposition process. The interfacial toughness between metal films and substrates is an important parameter for the reliability of the film/substrate system. The height profiles of different sections across the telephone-cord wrinkle can be considered a straight-sided model with uniform width and height or a pinned circular model that has a delamination region characterized by a sequence of connected sectors. Furthermore, the telephone-cord geometry of the thin film can be used to calculate interfacial toughness. The instability of the finite element model is introduced to fit the buckling morphology obtained by SFF. The interfacial toughness is determined to be 0.203 J/m2 at a 70.4° phase angle from the straight-sided model and 0.105 J/m2 at 76.9° from the pinned circular model.

  8. Shape-memory polymer nanocomposites with a 3D conductive network for bidirectional actuation and locomotion application.

    PubMed

    Peng, Qingyu; Wei, Hongqiu; Qin, Yuyang; Lin, Zaishan; Zhao, Xu; Xu, Fan; Leng, Jinsong; He, Xiaodong; Cao, Anyuan; Li, Yibin

    2016-10-27

    Electrical stimulation of shape-memory polymers (SMPs) has many advantages over thermal methods; creating an efficient conductive path through the bulk polymers is essential for developing high performance electroactive systems. Here, we show that a three-dimensional (3D) porous carbon nanotube sponge can serve as a built-in integral conductive network to provide internal, homogeneous, in situ Joule heating for shape-memory polymers, thus significantly improving the mechanical and thermal behavior of SMPs. As a result, the 3D nanocomposites show a fast response and produce large exerting forces (with a maximum flexural stress of 14.6 MPa) during shape recovery. We further studied the construction of a double-layer composite structure for bidirectional actuation, in which the shape change is dominated by the temperature-dependent exerting force from the top and bottom layer, alternately. An inchworm-type robot is demonstrated whose locomotion is realized by such bidirectional shape memory. Our large stroke shape-memory nanocomposites have promising applications in many areas including artificial muscles and bionic robots.

  9. Validation of 3-D Ice Accretion Measurement Methodology for Experimental Aerodynamic Simulation

    NASA Technical Reports Server (NTRS)

    Broeren, Andy P.; Addy, Harold E., Jr.; Lee, Sam; Monastero, Marianne C.

    2014-01-01

    Determining the adverse aerodynamic effects due to ice accretion often relies on dry-air wind-tunnel testing of artificial, or simulated, ice shapes. Recent developments in ice accretion documentation methods have yielded a laser-scanning capability that can measure highly three-dimensional features of ice accreted in icing wind tunnels. The objective of this paper was to evaluate the aerodynamic accuracy of ice-accretion simulations generated from laser-scan data. Ice-accretion tests were conducted in the NASA Icing Research Tunnel using an 18-inch chord, 2-D straight wing with NACA 23012 airfoil section. For six ice accretion cases, a 3-D laser scan was performed to document the ice geometry prior to the molding process. Aerodynamic performance testing was conducted at the University of Illinois low-speed wind tunnel at a Reynolds number of 1.8 x 10(exp 6) and a Mach number of 0.18 with an 18-inch chord NACA 23012 airfoil model that was designed to accommodate the artificial ice shapes. The ice-accretion molds were used to fabricate one set of artificial ice shapes from polyurethane castings. The laser-scan data were used to fabricate another set of artificial ice shapes using rapid prototype manufacturing such as stereolithography. The iced-airfoil results with both sets of artificial ice shapes were compared to evaluate the aerodynamic simulation accuracy of the laser-scan data. For four of the six ice-accretion cases, there was excellent agreement in the iced-airfoil aerodynamic performance between the casting and laser-scan based simulations. For example, typical differences in iced-airfoil maximum lift coefficient were less than 3% with corresponding differences in stall angle of approximately one degree or less. The aerodynamic simulation accuracy reported in this paper has demonstrated the combined accuracy of the laser-scan and rapid-prototype manufacturing approach to simulating ice accretion for a NACA 23012 airfoil. For several of the ice

  10. A comparison of US- versus MR-based 3-D Prostate Shapes Using Radial Basis Function Interpolation and Statistical Shape Models.

    PubMed

    Tao, Ran; Tavakoli, Mahdi; Sloboda, Ron; Usmani, Nawaid

    2015-03-01

    This paper presents a comparison of three-dimensional (3-D) segmentations of the prostate, based on two-dimensional (2-D) manually segmented contours, obtained using ultrasound (US) and magnetic resonance (MR) imaging data collected from 40 patients diagnosed with localized prostate cancer and scheduled to receive brachytherapy treatment. The approach we propose here for 3-D prostate segmentation first uses radial basis function interpolation to construct a 3-D point distribution model for each prostate. Next, a modified principal axis transformation is utilized for rigid registration of the US and MR images of the same prostate in preparation for the following shape comparison. Then, statistical shape models are used to capture the segmented 3-D prostate geometries for the subsequent cross-modality comparison. Our study includes not only cross-modality geometric comparisons in terms of prostate volumes and dimensions, but also an investigation of interchangeability of the two imaging modalities in terms of automatic contour segmentation at the pre-implant planning stage of prostate brachytherapy treatment. By developing a new scheme to compare the two imaging modalities in terms of the segmented 3-D shapes, we have taken a first step necessary for building coupled US-MR segmentation strategies for prostate brachytherapy pre-implant planning, which at present is predominantly informed by US images only.

  11. Statistical shape analysis using 3D Poisson equation--A quantitatively validated approach.

    PubMed

    Gao, Yi; Bouix, Sylvain

    2016-05-01

    Statistical shape analysis has been an important area of research with applications in biology, anatomy, neuroscience, agriculture, paleontology, etc. Unfortunately, the proposed methods are rarely quantitatively evaluated, and as shown in recent studies, when they are evaluated, significant discrepancies exist in their outputs. In this work, we concentrate on the problem of finding the consistent location of deformation between two population of shapes. We propose a new shape analysis algorithm along with a framework to perform a quantitative evaluation of its performance. Specifically, the algorithm constructs a Signed Poisson Map (SPoM) by solving two Poisson equations on the volumetric shapes of arbitrary topology, and statistical analysis is then carried out on the SPoMs. The method is quantitatively evaluated on synthetic shapes and applied on real shape data sets in brain structures.

  12. Generation and Comparison of Tls and SFM Based 3d Models of Solid Shapes in Hydromechanic Research

    NASA Astrophysics Data System (ADS)

    Zhang, R.; Schneider, D.; Strauß, B.

    2016-06-01

    The aim of a current study at the Institute of Hydraulic Engineering and Technical Hydromechanics at TU Dresden is to develop a new injection method for quick and economic sealing of dikes or dike bodies, based on a new synthetic material. To validate the technique, an artificial part of a sand dike was built in an experimental hall. The synthetic material was injected, which afterwards spreads in the inside of the dike. After the material was fully solidified, the surrounding sand was removed with an excavator. In this paper, two methods, which applied terrestrial laser scanning (TLS) and structure from motion (SfM) respectively, for the acquisition of a 3D point cloud of the remaining shapes are described and compared. Combining with advanced software packages, a triangulated 3D model was generated and subsequently the volume of vertical sections of the shape were calculated. As the calculation of the volume revealed differences between the TLS and the SfM 3D model, a thorough qualitative comparison of the two models will be presented as well as a detailed accuracy assessment. The main influence of the accuracy is caused by generalisation in case of gaps due to occlusions in the 3D point cloud. Therefore, improvements for the data acquisition with TLS and SfM for such kind of objects are suggested in the paper.

  13. Graph-regularized 3D shape reconstruction from highly anisotropic and noisy images

    PubMed Central

    Heinrich, Stephanie; Drewe, Philipp; Lou, Xinghua; Umrania, Shefali; Rätsch, Gunnar

    2014-01-01

    Analysis of microscopy images can provide insight into many biological processes. One particularly challenging problem is cellular nuclear segmentation in highly anisotropic and noisy 3D image data. Manually localizing and segmenting each and every cellular nucleus is very time-consuming, which remains a bottleneck in large-scale biological experiments. In this work, we present a tool for automated segmentation of cellular nuclei from 3D fluorescent microscopic data. Our tool is based on state-of-the-art image processing and machine learning techniques and provides a user-friendly graphical user interface. We show that our tool is as accurate as manual annotation and greatly reduces the time for the registration. PMID:25866587

  14. A novel adaptive 3D medical image interpolation method based on shape

    NASA Astrophysics Data System (ADS)

    Chen, Jiaxin; Ma, Wei

    2013-03-01

    Image interpolation of cross-sections is one of the key steps of medical visualization. Aiming at the problem of fuzzy boundaries and large amount of calculation, which are brought by the traditional interpolation, a novel adaptive 3-D medical image interpolation method is proposed in this paper. Firstly, the contour is obtained by the edge interpolation, and the corresponding points are found according to the relation of the contour and points on the original images. Secondly, this algorithm utilizes volume relativity to get the best point-pair with the adaptive methods. Finally, the grey value of interpolation pixel is got by the matching point interpolation. The experimental results show that the method presented in the paper not only can meet the requirements of interpolation accuracy, but also can be used effectively in medical image 3D reconstruction.

  15. Shaped 3D singular spectrum analysis for quantifying gene expression, with application to the early zebrafish embryo.

    PubMed

    Shlemov, Alex; Golyandina, Nina; Holloway, David; Spirov, Alexander

    2015-01-01

    Recent progress in microscopy technologies, biological markers, and automated processing methods is making possible the development of gene expression atlases at cellular-level resolution over whole embryos. Raw data on gene expression is usually very noisy. This noise comes from both experimental (technical/methodological) and true biological sources (from stochastic biochemical processes). In addition, the cells or nuclei being imaged are irregularly arranged in 3D space. This makes the processing, extraction, and study of expression signals and intrinsic biological noise a serious challenge for 3D data, requiring new computational approaches. Here, we present a new approach for studying gene expression in nuclei located in a thick layer around a spherical surface. The method includes depth equalization on the sphere, flattening, interpolation to a regular grid, pattern extraction by Shaped 3D singular spectrum analysis (SSA), and interpolation back to original nuclear positions. The approach is demonstrated on several examples of gene expression in the zebrafish egg (a model system in vertebrate development). The method is tested on several different data geometries (e.g., nuclear positions) and different forms of gene expression patterns. Fully 3D datasets for developmental gene expression are becoming increasingly available; we discuss the prospects of applying 3D-SSA to data processing and analysis in this growing field.

  16. 3D Measurements of Ignition Processes at 20 kHz in a Supersonic Combustor

    DTIC Science & Technology

    2015-03-05

    measurements obtained via PIV [2], though quantitative com- parison is difficult due to the 2D nature of previous results and the 3D nature of the current...1 3 DOI 10.1007/s00340-015-6066-4 Appl. Phys. B (2015) 119:313–318 3D measurements of ignition processes at 20 kHz in a supersonic combustor Lin Ma...image velocimetry (PIV) [2]. Results from these past efforts all reveal highly transient and 3D flow and flame structures during the ignition processes

  17. An industrial light-field camera applied for 3D velocity measurements in a slot jet

    NASA Astrophysics Data System (ADS)

    Seredkin, A. V.; Shestakov, M. V.; Tokarev, M. P.

    2016-10-01

    Modern light-field cameras have found their application in different areas like photography, surveillance and quality control in industry. A number of studies have been reported relatively low spatial resolution of 3D profiles of registered objects along the optical axis of the camera. This article describes a method for 3D velocity measurements in fluid flows using an industrial light-field camera and an alternative reconstruction algorithm based on a statistical approach. This method is more accurate than triangulation when applied for tracking small registered objects like tracer particles in images. The technique was used to measure 3D velocity fields in a turbulent slot jet.

  18. New 3-D coordination polymers based on semi-rigid V-shape tetracarboxylates

    NASA Astrophysics Data System (ADS)

    Huang, Jing-Jing; Xu, Wei; Wang, Yan-Ning; Yu, Jie-Hui; Zhang, Ping; Xu, Ji-Qing

    2015-03-01

    Under the hydrothermal conditions, the reactions of transition-metal salts, tetracarboxylic acids and N,N‧-donor ligands yielded three new coordination polymers as [Cu4(fph)2(bpe)3(H2O)2]·2H2O (fph=4,4‧-(hexafluoroisopropylidene)diphthalate, bpe=1,2-bis(pyridyl)ethylene) 1, [Co2(fph)(bpa)2(H2O)2]·3H2O (bpa=1,2-bis(pyridyl)ethylane) 2, and [Ni(H2O)(H2oph)(bpa)] (oph=4,4‧-oxydiphthalate) 3. X-ray single-crystal diffraction analysis revealed that the title three compounds all possess the three-dimensional (3-D) network structures. For compound 1, the fph molecules first link the Cu2+ ions into a two-dimensional (2-D) wave-like layer with a (4,4) topology. The bpe molecules act as the second linkers, extending the 2-D layers into a 3-D network. For compound 2, the fph molecules still serve as the first connectors, linking the Co2+ ions into a one-dimensional (1-D) tube-like chain. Then the bpa molecules propagate the chains into a 3-D (4,4,4)-connected network. In the formation of the 3-D network of compound 3, the oph molecule does not play a role. The bpa molecules as well as the water molecules act as a mixed bridge. Only a kind of 4-connected metal node is observed in compound 3. The magnetic properties of compounds 1-3 were investigated and all exhibit the predominant antiferromegnetic magnetic behaviors.

  19. Monte Carlo - Metropolis Investigations of Shape and Matrix Effects in 2D and 3D Spin-Crossover Nanoparticles

    NASA Astrophysics Data System (ADS)

    Guerroudj, Salim; Caballero, Rafael; De Zela, Francisco; Jureschi, Catalin; Linares, Jorge; Boukheddaden, Kamel

    2016-08-01

    The Ising like model, taking into account short-, long-range interaction as well as surface effects is used to investigate size and shape effects on the thermal behaviour of 2D and 3D spin crossover (SCO) nanoparticles embedded in a matrix. We analyze the role of the parametert, representing the ratio between the number of surface and volume molecules, on the unusual thermal hysteresis behaviour (appearance of the hysteresis and a re-entrance phase transition) at small scales.

  20. Is the perception of 3D shape from shading based on assumed reflectance and illumination?

    PubMed Central

    Todd, James T.; Egan, Eric J. L.; Phillips, Flip

    2014-01-01

    The research described in the present article was designed to compare three types of image shading: one generated with a Lambertian BRDF and homogeneous illumination such that image intensity was determined entirely by local surface orientation irrespective of position; one that was textured with a linear intensity gradient, such that image intensity was determined entirely by local surface position irrespective of orientation; and another that was generated with a Lambertian BRDF and inhomogeneous illumination such that image intensity was influenced by both position and orientation. A gauge figure adjustment task was used to measure observers' perceptions of local surface orientation on the depicted surfaces, and the probe points included 60 pairs of regions that both had the same orientation. The results show clearly that observers' perceptions of these three types of stimuli were remarkably similar, and that probe regions with similar apparent orientations could have large differences in image intensity. This latter finding is incompatible with any process for computing shape from shading that assumes any plausible reflectance function combined with any possible homogeneous illumination. PMID:26034561

  1. Investigating Cardiac Motion Patterns Using Synthetic High-Resolution 3D Cardiovascular Magnetic Resonance Images and Statistical Shape Analysis

    PubMed Central

    Biffi, Benedetta; Bruse, Jan L.; Zuluaga, Maria A.; Ntsinjana, Hopewell N.; Taylor, Andrew M.; Schievano, Silvia

    2017-01-01

    Diagnosis of ventricular dysfunction in congenital heart disease is more and more based on medical imaging, which allows investigation of abnormal cardiac morphology and correlated abnormal function. Although analysis of 2D images represents the clinical standard, novel tools performing automatic processing of 3D images are becoming available, providing more detailed and comprehensive information than simple 2D morphometry. Among these, statistical shape analysis (SSA) allows a consistent and quantitative description of a population of complex shapes, as a way to detect novel biomarkers, ultimately improving diagnosis and pathology understanding. The aim of this study is to describe the implementation of a SSA method for the investigation of 3D left ventricular shape and motion patterns and to test it on a small sample of 4 congenital repaired aortic stenosis patients and 4 age-matched healthy volunteers to demonstrate its potential. The advantage of this method is the capability of analyzing subject-specific motion patterns separately from the individual morphology, visually and quantitatively, as a way to identify functional abnormalities related to both dynamics and shape. Specifically, we combined 3D, high-resolution whole heart data with 2D, temporal information provided by cine cardiovascular magnetic resonance images, and we used an SSA approach to analyze 3D motion per se. Preliminary results of this pilot study showed that using this method, some differences in end-diastolic and end-systolic ventricular shapes could be captured, but it was not possible to clearly separate the two cohorts based on shape information alone. However, further analyses on ventricular motion allowed to qualitatively identify differences between the two populations. Moreover, by describing shape and motion with a small number of principal components, this method offers a fully automated process to obtain visually intuitive and numerical information on cardiac shape and motion

  2. Estimation of aortic valve leaflets from 3D CT images using local shape dictionaries and linear coding

    NASA Astrophysics Data System (ADS)

    Liang, Liang; Martin, Caitlin; Wang, Qian; Sun, Wei; Duncan, James

    2016-03-01

    Aortic valve (AV) disease is a significant cause of morbidity and mortality. The preferred treatment modality for severe AV disease is surgical resection and replacement of the native valve with either a mechanical or tissue prosthetic. In order to develop effective and long-lasting treatment methods, computational analyses, e.g., structural finite element (FE) and computational fluid dynamic simulations, are very effective for studying valve biomechanics. These computational analyses are based on mesh models of the aortic valve, which are usually constructed from 3D CT images though many hours of manual annotation, and therefore an automatic valve shape reconstruction method is desired. In this paper, we present a method for estimating the aortic valve shape from 3D cardiac CT images, which is represented by triangle meshes. We propose a pipeline for aortic valve shape estimation which includes novel algorithms for building local shape dictionaries and for building landmark detectors and curve detectors using local shape dictionaries. The method is evaluated on real patient image dataset using a leave-one-out approach and achieves an average accuracy of 0.69 mm. The work will facilitate automatic patient-specific computational modeling of the aortic valve.

  3. Morphogenesis and mechanostabilization of complex natural and 3D printed shapes

    PubMed Central

    Tiwary, Chandra Sekhar; Kishore, Sharan; Sarkar, Suman; Mahapatra, Debiprosad Roy; Ajayan, Pulickel M.; Chattopadhyay, Kamanio

    2015-01-01

    The natural selection and the evolutionary optimization of complex shapes in nature are closely related to their functions. Mechanostabilization of shape of biological structure via morphogenesis has several beautiful examples. With the help of simple mechanics-based modeling and experiments, we show an important causality between natural shape selection as evolutionary outcome and the mechanostabilization of seashells. The effect of biological growth on the mechanostabilization process is identified with examples of two natural shapes of seashells, one having a diametrically converging localization of stresses and the other having a helicoidally concentric localization of stresses. We demonstrate how the evolved shape enables predictable protection of soft body parts of the species. The effect of bioavailability of natural material is found to be a secondary factor compared to shape selectivity, where material microstructure only acts as a constraint to evolutionary optimization. This is confirmed by comparing the mechanostabilization behavior of three-dimensionally printed synthetic polymer structural shapes with that of natural seashells consisting of ceramic and protein. This study also highlights interesting possibilities in achieving a new design of structures made of ordinary materials which have bio-inspired optimization objectives. PMID:26601170

  4. Label-free characterization of white blood cells by measuring 3D refractive index maps

    PubMed Central

    Yoon, Jonghee; Kim, Kyoohyun; Park, HyunJoo; Choi, Chulhee; Jang, Seongsoo; Park, YongKeun

    2015-01-01

    The characterization of white blood cells (WBCs) is crucial for blood analyses and disease diagnoses. However, current standard techniques rely on cell labeling, a process which imposes significant limitations. Here we present three-dimensional (3D) optical measurements and the label-free characterization of mouse WBCs using optical diffraction tomography. 3D refractive index (RI) tomograms of individual WBCs are constructed from multiple two-dimensional quantitative phase images of samples illuminated at various angles of incidence. Measurements of the 3D RI tomogram of WBCs enable the separation of heterogeneous populations of WBCs using quantitative morphological and biochemical information. Time-lapse tomographic measurements also provide the 3D trajectory of micrometer-sized beads ingested by WBCs. These results demonstrate that optical diffraction tomography can be a useful and versatile tool for the study of WBCs. PMID:26504637

  5. Introductory review on `Flying Triangulation': a motion-robust optical 3D measurement principle

    NASA Astrophysics Data System (ADS)

    Ettl, Svenja

    2015-04-01

    'Flying Triangulation' (FlyTri) is a recently developed principle which allows for a motion-robust optical 3D measurement of rough surfaces. It combines a simple sensor with sophisticated algorithms: a single-shot sensor acquires 2D camera images. From each camera image, a 3D profile is generated. The series of 3D profiles generated are aligned to one another by algorithms, without relying on any external tracking device. It delivers real-time feedback of the measurement process which enables an all-around measurement of objects. The principle has great potential for small-space acquisition environments, such as the measurement of the interior of a car, and motion-sensitive measurement tasks, such as the intraoral measurement of teeth. This article gives an overview of the basic ideas and applications of FlyTri. The main challenges and their solutions are discussed. Measurement examples are also given to demonstrate the potential of the measurement principle.

  6. 3D flame topography obtained by tomographic chemiluminescence with direct comparison to planar Mie scattering measurements.

    PubMed

    Xu, Wenjiang; Wickersham, A J; Wu, Yue; He, Fan; Ma, Lin

    2015-03-20

    This work reports the measurements of 3D flame topography using tomographic chemiluminescence and its validation by direct comparison against planar Mie scattering measurements. Tomographic measurements of the 3D topography of various well-controlled laboratory flames were performed using projections measured by seven cameras, and a simultaneous Mie scattering measurement was performed to measure a 2D cross section of the 3D flame topography. The tomographic measurements were based on chemiluminescence emissions from the flame, and the Mie scattering measurements were based on micrometer-size oil droplets seeded into the flow. The flame topography derived from the 3D tomographic and the Mie scattering measurement was then directly compared. The results show that the flame topography obtained from tomographic chemiluminescence and the Mie measurement agreed qualitatively (i.e., both methods yielded the same profile of the flame fronts), but a quantitative difference on the order of millimeters was observed between these two methods. These results are expected to be useful for understanding the capabilities and limitations of the 3D tomographic and Mie scattering techniques in combustion diagnostics.

  7. Generation of Fullspan Leading-Edge 3D Ice Shapes for Swept-Wing Aerodynamic Testing

    NASA Technical Reports Server (NTRS)

    Camello, Stephanie C.; Lee, Sam; Lum, Christopher; Bragg, Michael B.

    2016-01-01

    The deleterious effect of ice accretion on aircraft is often assessed through dry-air flight and wind tunnel testing with artificial ice shapes. This paper describes a method to create fullspan swept-wing artificial ice shapes from partial span ice segments acquired in the NASA Glenn Icing Reserch Tunnel for aerodynamic wind-tunnel testing. Full-scale ice accretion segments were laser scanned from the Inboard, Midspan, and Outboard wing station models of the 65% scale Common Research Model (CRM65) aircraft configuration. These were interpolated and extrapolated using a weighted averaging method to generate fullspan ice shapes from the root to the tip of the CRM65 wing. The results showed that this interpolation method was able to preserve many of the highly three dimensional features typically found on swept-wing ice accretions. The interpolated fullspan ice shapes were then scaled to fit the leading edge of a 8.9% scale version of the CRM65 wing for aerodynamic wind-tunnel testing. Reduced fidelity versions of the fullspan ice shapes were also created where most of the local three-dimensional features were removed. The fullspan artificial ice shapes and the reduced fidelity versions were manufactured using stereolithography.

  8. Variation in the measurement of cranial volume and surface area using 3D laser scanning technology.

    PubMed

    Sholts, Sabrina B; Wärmländer, Sebastian K T S; Flores, Louise M; Miller, Kevin W P; Walker, Phillip L

    2010-07-01

    Three-dimensional (3D) laser scanner models of human crania can be used for forensic facial reconstruction, and for obtaining craniometric data useful for estimating age, sex, and population affinity of unidentified human remains. However, the use of computer-generated measurements in a casework setting requires the measurement precision to be known. Here, we assess the repeatability and precision of cranial volume and surface area measurements using 3D laser scanner models created by different operators using different protocols for collecting and processing data. We report intraobserver measurement errors of 0.2% and interobserver errors of 2% of the total area and volume values, suggesting that observer-related errors do not pose major obstacles for sharing, combining, or comparing such measurements. Nevertheless, as no standardized procedure exists for area or volume measurements from 3D models, it is imperative to report the scanning and postscanning protocols employed when such measurements are conducted in a forensic setting.

  9. Method of Individual Adjustment for 3D CT Analysis: Linear Measurement.

    PubMed

    Kim, Dong Kyu; Choi, Dong Hun; Lee, Jeong Woo; Yang, Jung Dug; Chung, Ho Yun; Cho, Byung Chae; Choi, Kang Young

    2016-01-01

    Introduction. We aim to regularize measurement values in three-dimensional (3D) computed tomography (CT) reconstructed images for higher-precision 3D analysis, focusing on length-based 3D cephalometric examinations. Methods. We measure the linear distances between points on different skull models using Vernier calipers (real values). We use 10 differently tilted CT scans for 3D CT reconstruction of the models and measure the same linear distances from the picture archiving and communication system (PACS). In both cases, each measurement is performed three times by three doctors, yielding nine measurements. The real values are compared with the PACS values. Each PACS measurement is revised based on the display field of view (DFOV) values and compared with the real values. Results. The real values and the PACS measurement changes according to tilt value have no significant correlations (p > 0.05). However, significant correlations appear between the real values and DFOV-adjusted PACS measurements (p < 0.001). Hence, we obtain a correlation expression that can yield real physical values from PACS measurements. The DFOV value intervals for various age groups are also verified. Conclusion. Precise confirmation of individual preoperative length and precise analysis of postoperative improvements through 3D analysis is possible, which is helpful for facial-bone-surgery symmetry correction.

  10. Method of Individual Adjustment for 3D CT Analysis: Linear Measurement

    PubMed Central

    Choi, Dong Hun; Lee, Jeong Woo; Yang, Jung Dug; Chung, Ho Yun; Cho, Byung Chae

    2016-01-01

    Introduction. We aim to regularize measurement values in three-dimensional (3D) computed tomography (CT) reconstructed images for higher-precision 3D analysis, focusing on length-based 3D cephalometric examinations. Methods. We measure the linear distances between points on different skull models using Vernier calipers (real values). We use 10 differently tilted CT scans for 3D CT reconstruction of the models and measure the same linear distances from the picture archiving and communication system (PACS). In both cases, each measurement is performed three times by three doctors, yielding nine measurements. The real values are compared with the PACS values. Each PACS measurement is revised based on the display field of view (DFOV) values and compared with the real values. Results. The real values and the PACS measurement changes according to tilt value have no significant correlations (p > 0.05). However, significant correlations appear between the real values and DFOV-adjusted PACS measurements (p < 0.001). Hence, we obtain a correlation expression that can yield real physical values from PACS measurements. The DFOV value intervals for various age groups are also verified. Conclusion. Precise confirmation of individual preoperative length and precise analysis of postoperative improvements through 3D analysis is possible, which is helpful for facial-bone-surgery symmetry correction. PMID:28070517

  11. 1-D and 2-D resonances in an Alpine valley identified from ambient noise measurements and 3-D modelling

    NASA Astrophysics Data System (ADS)

    Le Roux, Olivier; Cornou, Cécile; Jongmans, Denis; Schwartz, Stéphane

    2012-09-01

    H/V spectral ratios are regularly used for estimating the bedrock depth in 1-D like basins exhibiting smooth lateral variations. In the case of 2-D or 3-D pronounced geometries, observational and numerical studies have shown that H/V curves exhibit peculiar shapes and that the H/V frequency generally overestimates 1-D theoretical resonance frequency. To investigate the capabilities of the H/V method in complex structures, a detailed comparison between measured and 3-D-simulated ambient vibrations was performed in the small-size lower Romanche valley (French Alps), which shows significant variations in geometry, downstream and upstream the Séchilienne basin. Analysing the H/V curve characteristics, two different wave propagation modes were identified along the valley. Relying on previous geophysical investigation, a power-law relationship was derived between the bedrock depth and the H/V peak frequency, which was used for building a 3-D model of the valley geometry. Simulated and experimental H/V curves were found to exhibit quite similar features in terms of curve shape and peak frequency values, validating the 3-D structure. This good agreement also evidenced two different propagation modes in the valley: 2-D resonance in the Séchilienne basin and 1-D resonance in the external parts. This study underlines the interest of H/V curves for investigating complex basin structures.

  12. Measuring Femoral Torsion In Vivo Using Freehand 3-D Ultrasound Imaging.

    PubMed

    Passmore, Elyse; Pandy, Marcus G; Graham, H Kerr; Sangeux, Morgan

    2016-02-01

    Despite variation in bone geometry, muscle and joint function is often investigated using generic musculoskeletal models. Patient-specific bone geometry can be obtained from computerised tomography, which involves ionising radiation, or magnetic resonance imaging (MRI), which is costly and time consuming. Freehand 3-D ultrasound provides an alternative to obtain bony geometry. The purpose of this study was to determine the accuracy and repeatability of 3-D ultrasound in measuring femoral torsion. Measurements of femoral torsion were performed on 10 healthy adults using MRI and 3-D ultrasound. Measurements of femoral torsion from 3-D ultrasound were, on average, smaller than those from MRI (mean difference = 1.8°; 95% confidence interval: -3.9°, 7.5°). MRI and 3-D ultrasound had Bland and Altman repeatability coefficients of 3.1° and 3.7°, respectively. Accurate measurements of femoral torsion were obtained with 3-D ultrasound offering the potential to acquire patient-specific bone geometry for musculoskeletal modelling. Three-dimensional ultrasound is non-invasive and relatively inexpensive and can be integrated into gait analysis.

  13. Measurement of spiculation index in 3D for solitary pulmonary nodules in volumetric lung CT images

    NASA Astrophysics Data System (ADS)

    Dhara, Ashis Kumar; Mukhopadhyay, Sudipta; Alam, Naved; Khandelwal, Niranjan

    2013-02-01

    In this paper a differential geometry based method is proposed for calculating surface speculation of solitary pulmonary nodule (SPN) in 3D from lung CT images. Spiculation present in SPN is an important shape feature to assist radiologist for measurement of malignancy. Performance of Computer Aided Diagnostic (CAD) system depends on the accurate estimation of feature like spiculation. In the proposed method, the peak of the spicules is identified using the property of Gaussian and mean curvature calculated at each surface point on segmented SPN. Once the peak point for a particular SPN is identified, the nearest valley points for the corresponding peak point are determined. The area of cross-section of the best fitted plane passing through the valley points is the base of that spicule. The solid angle subtended by the base of spicule at peak point and the distance of peak point from nodule base are taken as the measures of spiculation. The speculation index (SI) for a particular SPN is the weighted combination of all the spicules present in that SPN. The proposed method is validated on 95 SPN from Imaging Database Resources Initiative (IDRI) public database. It has achieved 87.4% accuracy in calculating quantified spiculation index compared to the spiculation index provided by radiologists in IDRI database.

  14. Optoelectronic instrumentation enhancement using data mining feedback for a 3D measurement system

    NASA Astrophysics Data System (ADS)

    Flores-Fuentes, Wendy; Sergiyenko, Oleg; Gonzalez-Navarro, Félix F.; Rivas-López, Moisés; Hernandez-Balbuena, Daniel; Rodríguez-Quiñonez, Julio C.; Tyrsa, Vera; Lindner, Lars

    2016-12-01

    3D measurement by a cyber-physical system based on optoelectronic scanning instrumentation has been enhanced by outliers and regression data mining feedback. The prototype has applications in (1) industrial manufacturing systems that include: robotic machinery, embedded vision, and motion control, (2) health care systems for measurement scanning, and (3) infrastructure by providing structural health monitoring. This paper presents new research performed in data processing of a 3D measurement vision sensing database. Outliers from multivariate data have been detected and removal to improve artificial intelligence regression algorithm results. Physical measurement error regression data has been used for 3D measurements error correction. Concluding, that the joint of physical phenomena, measurement and computation is an effectiveness action for feedback loops in the control of industrial, medical and civil tasks.

  15. Application of 3D Zernike descriptors to shape-based ligand similarity searching

    PubMed Central

    2009-01-01

    Background The identification of promising drug leads from a large database of compounds is an important step in the preliminary stages of drug design. Although shape is known to play a key role in the molecular recognition process, its application to virtual screening poses significant hurdles both in terms of the encoding scheme and speed. Results In this study, we have examined the efficacy of the alignment independent three-dimensional Zernike descriptor (3DZD) for fast shape based similarity searching. Performance of this approach was compared with several other methods including the statistical moments based ultrafast shape recognition scheme (USR) and SIMCOMP, a graph matching algorithm that compares atom environments. Three benchmark datasets are used to thoroughly test the methods in terms of their ability for molecular classification, retrieval rate, and performance under the situation that simulates actual virtual screening tasks over a large pharmaceutical database. The 3DZD performed better than or comparable to the other methods examined, depending on the datasets and evaluation metrics used. Reasons for the success and the failure of the shape based methods for specific cases are investigated. Based on the results for the three datasets, general conclusions are drawn with regard to their efficiency and applicability. Conclusion The 3DZD has unique ability for fast comparison of three-dimensional shape of compounds. Examples analyzed illustrate the advantages and the room for improvements for the 3DZD. PMID:20150998

  16. Classification of mathematics deficiency using shape and scale analysis of 3D brain structures

    NASA Astrophysics Data System (ADS)

    Kurtek, Sebastian; Klassen, Eric; Gore, John C.; Ding, Zhaohua; Srivastava, Anuj

    2011-03-01

    We investigate the use of a recent technique for shape analysis of brain substructures in identifying learning disabilities in third-grade children. This Riemannian technique provides a quantification of differences in shapes of parameterized surfaces, using a distance that is invariant to rigid motions and re-parameterizations. Additionally, it provides an optimal registration across surfaces for improved matching and comparisons. We utilize an efficient gradient based method to obtain the optimal re-parameterizations of surfaces. In this study we consider 20 different substructures in the human brain and correlate the differences in their shapes with abnormalities manifested in deficiency of mathematical skills in 106 subjects. The selection of these structures is motivated in part by the past links between their shapes and cognitive skills, albeit in broader contexts. We have studied the use of both individual substructures and multiple structures jointly for disease classification. Using a leave-one-out nearest neighbor classifier, we obtained a 62.3% classification rate based on the shape of the left hippocampus. The use of multiple structures resulted in an improved classification rate of 71.4%.

  17. Principal component analysis in construction of 3D human knee joint models using a statistical shape model method.

    PubMed

    Tsai, Tsung-Yuan; Li, Jing-Sheng; Wang, Shaobai; Li, Pingyue; Kwon, Young-Min; Li, Guoan

    2015-01-01

    The statistical shape model (SSM) method that uses 2D images of the knee joint to predict the three-dimensional (3D) joint surface model has been reported in the literature. In this study, we constructed a SSM database using 152 human computed tomography (CT) knee joint models, including the femur, tibia and patella and analysed the characteristics of each principal component of the SSM. The surface models of two in vivo knees were predicted using the SSM and their 2D bi-plane fluoroscopic images. The predicted models were compared to their CT joint models. The differences between the predicted 3D knee joint surfaces and the CT image-based surfaces were 0.30 ± 0.81 mm, 0.34 ± 0.79 mm and 0.36 ± 0.59 mm for the femur, tibia and patella, respectively (average ± standard deviation). The computational time for each bone of the knee joint was within 30 s using a personal computer. The analysis of this study indicated that the SSM method could be a useful tool to construct 3D surface models of the knee with sub-millimeter accuracy in real time. Thus, it may have a broad application in computer-assisted knee surgeries that require 3D surface models of the knee.

  18. Comparative Local Quality Assessment of 3D Medical Image Segmentations with Focus on Statistical Shape Model-Based Algorithms.

    PubMed

    Landesberger, Tatiana von; Basgier, Dennis; Becker, Meike

    2016-12-01

    The quality of automatic 3D medical segmentation algorithms needs to be assessed on test datasets comprising several 3D images (i.e., instances of an organ). The experts need to compare the segmentation quality across the dataset in order to detect systematic segmentation problems. However, such comparative evaluation is not supported well by current methods. We present a novel system for assessing and comparing segmentation quality in a dataset with multiple 3D images. The data is analyzed and visualized in several views. We detect and show regions with systematic segmentation quality characteristics. For this purpose, we extended a hierarchical clustering algorithm with a connectivity criterion. We combine quality values across the dataset for determining regions with characteristic segmentation quality across instances. Using our system, the experts can also identify 3D segmentations with extraordinary quality characteristics. While we focus on algorithms based on statistical shape models, our approach can also be applied to cases, where landmark correspondences among instances can be established. We applied our approach to three real datasets: liver, cochlea and facial nerve. The segmentation experts were able to identify organ regions with systematic segmentation characteristics as well as to detect outlier instances.

  19. Shape-based classification of 3D facial data to support 22q11.2DS craniofacial research.

    PubMed

    Wilamowska, Katarzyna; Wu, Jia; Heike, Carrie; Shapiro, Linda

    2012-06-01

    3D imaging systems are used to construct high-resolution meshes of patient's heads that can be analyzed by computer algorithms. Our work starts with such 3D head meshes and produces both global and local descriptors of 3D shape. Since these descriptors are numeric feature vectors, they can be used in both classification and quantification of various different abnormalities. In this paper, we define these descriptors, describe our methodology for constructing them from 3D head meshes, and show through a set of classification experiments involving cases and controls for a genetic disorder called 22q11.2 deletion syndrome that they are suitable for use in craniofacial research studies. The main contributions of this work include: automatic generation of novel global and local data representations, robust automatic placement of anthropometric landmarks, generation of local descriptors for nasal and oral facial features from landmarks, use of local descriptors for predicting various local facial features, and use of global features for 22q11.2DS classification, showing their potential use as descriptors in craniofacial research.

  20. Intensity distribution angular shaping - Practical approach for 3D optical beamforming

    NASA Astrophysics Data System (ADS)

    Wojtanowski, Jacek; Traczyk, Maciej; Zygmunt, Marek; Mierczyk, Zygmunt; Knysak, Piotr; Drozd, Tadeusz

    2014-12-01

    We present approach of optical design which enables to obtain aspheric lens shape optimized for providing the specific light power density distribution in space. Proposed method is based on the evaluation of corresponding angular intensity distribution which can be obtained by the decomposition of the desired spatial distribution into virtual light cones set and collapsing it to the equivalent angular fingerprint. Rigorous formulas have been derived to relate refractive aspheric shape and the corresponding intensity distribution which is used for lens optimization. Algorithms of modeling and optimization were implemented in Matlab© and the calculated designs were successfully tested in Zemax environment.

  1. Microwave and camera sensor fusion for the shape extraction of metallic 3D space objects

    NASA Technical Reports Server (NTRS)

    Shaw, Scott W.; Defigueiredo, Rui J. P.; Krishen, Kumar

    1989-01-01

    The vacuum of space presents special problems for optical image sensors. Metallic objects in this environment can produce intense specular reflections and deep shadows. By combining the polarized RCS with an incomplete camera image, it has become possible to better determine the shape of some simple three-dimensional objects. The radar data are used in an iterative procedure that generates successive approximations to the target shape by minimizing the error between computed scattering cross-sections and the observed radar returns. Favorable results have been obtained for simulations and experiments reconstructing plates, ellipsoids, and arbitrary surfaces.

  2. Engineering anatomically shaped vascularized bone grafts with hASCs and 3D-printed PCL scaffolds.

    PubMed

    Temple, Joshua P; Hutton, Daphne L; Hung, Ben P; Huri, Pinar Yilgor; Cook, Colin A; Kondragunta, Renu; Jia, Xiaofeng; Grayson, Warren L

    2014-12-01

    The treatment of large craniomaxillofacial bone defects is clinically challenging due to the limited availability of transplantable autologous bone grafts and the complex geometry of the bones. The ability to regenerate new bone tissues that faithfully replicate the anatomy would revolutionize treatment options. Advances in the field of bone tissue engineering over the past few decades offer promising new treatment alternatives using biocompatible scaffold materials and autologous cells. This approach combined with recent advances in three-dimensional (3D) printing technologies may soon allow the generation of large, bioartificial bone grafts with custom, patient-specific architecture. In this study, we use a custom-built 3D printer to develop anatomically shaped polycaprolactone (PCL) scaffolds with varying internal porosities. These scaffolds are assessed for their ability to support induction of human adipose-derived stem cells (hASCs) to form vasculature and bone, two essential components of functional bone tissue. The development of functional tissues is assessed in vitro and in vivo. Finally, we demonstrate the ability to print large mandibular and maxillary bone scaffolds that replicate fine details extracted from patient's computed tomography scans. The findings of this study illustrate the capabilities and potential of 3D printed scaffolds to be used for engineering autologous, anatomically shaped, vascularized bone grafts.

  3. 3D shape tracking of minimally invasive medical instruments using optical frequency domain reflectometry

    NASA Astrophysics Data System (ADS)

    Parent, Francois; Kanti Mandal, Koushik; Loranger, Sebastien; Watanabe Fernandes, Eric Hideki; Kashyap, Raman; Kadoury, Samuel

    2016-03-01

    We propose here a new alternative to provide real-time device tracking during minimally invasive interventions using a truly-distributed strain sensor based on optical frequency domain reflectometry (OFDR) in optical fibers. The guidance of minimally invasive medical instruments such as needles or catheters (ex. by adding a piezoelectric coating) has been the focus of extensive research in the past decades. Real-time tracking of instruments in medical interventions facilitates image guidance and helps the user to reach a pre-localized target more precisely. Image-guided systems using ultrasound imaging and shape sensors based on fiber Bragg gratings (FBG)-embedded optical fibers can provide retroactive feedback to the user in order to reach the targeted areas with even more precision. However, ultrasound imaging with electro-magnetic tracking cannot be used in the magnetic resonance imaging (MRI) suite, while shape sensors based on FBG embedded in optical fibers provides discrete values of the instrument position, which requires approximations to be made to evaluate its global shape. This is why a truly-distributed strain sensor based on OFDR could enhance the tracking accuracy. In both cases, since the strain is proportional to the radius of curvature of the fiber, a strain sensor can provide the three-dimensional shape of medical instruments by simply inserting fibers inside the devices. To faithfully follow the shape of the needle in the tracking frame, 3 fibers glued in a specific geometry are used, providing 3 degrees of freedom along the fiber. Near real-time tracking of medical instruments is thus obtained offering clear advantages for clinical monitoring in remotely controlled catheter or needle guidance. We present results demonstrating the promising aspects of this approach as well the limitations of using the OFDR technique.

  4. Heating properties of the needle type applicator made of shape memory alloy by 3-D anatomical human head model.

    PubMed

    Mimoto, N; Kato, K; Kanazawa, Y; Shindo, Y; Tsuchiya, K; Kubo, M; Uzuka, T; Takahashi, H; Fujii, Y

    2009-01-01

    Since the human brain is protected by the skull, it is not easy to non-invasively heat deep brain tumors with electromagnetic energy for hyperthermia treatments. Generally, needle type applicators were used in clinical practice to heat brain tumors. To expand the heating area of needle type applicators, we have developed a new type of needle made of a shape memory alloy (SMA). In this paper, heating properties of the proposed SMA needle type applicator were discussed. Here, in order to apply the SMA needle type applicator clinically. First, we constructed an anatomical 3-D FEM model from MRI and X-ray CT images using 3D-CAD software. Second, we estimated electric and temperature distributions to confirm the SMA needle type applicator using the FEM soft were JMAG-Studio. From these results, it was confirmed that the proposed method can expand the heating area and control the heating of various sizes of brain tumors.

  5. Non-rigid registration of small animal skeletons from micro-CT using 3D shape context

    NASA Astrophysics Data System (ADS)

    Xiao, Di; Bourgeat, Pierrick; Fripp, Jurgen; Acosta Tamayo, Oscar; Gregoire, Marie Claude; Salvado, Olivier

    2009-02-01

    Small animal registration is an important step for molecular image analysis. Skeleton registration from whole-body or only partial micro Computerized Tomography (CT) image is often performed to match individual rats to atlases and templates, for example to identify organs in positron emission tomography (PET). In this paper, we extend the shape context matching technique for 3D surface registration and apply it for rat hind limb skeleton registration from CT images. Using the proposed method, after standard affine iterative closest point (ICP) registration, correspondences between the 3D points from sour and target objects were robustly found and used to deform the limb skeleton surface with thin-plate-spline (TPS). Experiments are described using phantoms and actual rat hind limb skeletons. On animals, mean square errors were decreased by the proposed registration compared to that of its initial alignment. Visually, skeletons were successfully registered even in cases of very different animal poses.

  6. Geometric-model-free tracking of extended targets using 3D lidar measurements

    NASA Astrophysics Data System (ADS)

    Steinemann, Philipp; Klappstein, Jens; Dickmann, Juergen; von Hundelshausen, Felix; Wünsche, Hans-Joachim

    2012-06-01

    Tracking of extended targets in high definition, 360-degree 3D-LIDAR (Light Detection and Ranging) measurements is a challenging task and a current research topic. It is a key component in robotic applications, and is relevant to path planning and collision avoidance. This paper proposes a new method without a geometric model to simultaneously track and accumulate 3D-LIDAR measurements of an object. The method itself is based on a particle filter and uses an object-related local 3D grid for each object. No geometric object hypothesis is needed. Accumulation allows coping with occlusions. The prediction step of the particle filter is governed by a motion model consisting of a deterministic and a probabilistic part. Since this paper is focused on tracking ground vehicles, a bicycle model is used for the deterministic part. The probabilistic part depends on the current state of each particle. A function for calculating the current probability density function for state transition is developed. It is derived in detail and based on a database consisting of vehicle dynamics measurements over several hundreds of kilometers. The adaptive probability density function narrows down the gating area for measurement data association. The second part of the proposed method addresses weighting the particles with a cost function. Different 3D-griddependent cost functions are presented and evaluated. Evaluations with real 3D-LIDAR measurements show the performance of the proposed method. The results are also compared to ground truth data.

  7. Structure light telecentric stereoscopic vision 3D measurement system based on Scheimpflug condition

    NASA Astrophysics Data System (ADS)

    Mei, Qing; Gao, Jian; Lin, Hui; Chen, Yun; Yunbo, He; Wang, Wei; Zhang, Guanjin; Chen, Xin

    2016-11-01

    We designed a new three-dimensional (3D) measurement system for micro components: a structure light telecentric stereoscopic vision 3D measurement system based on the Scheimpflug condition. This system creatively combines the telecentric imaging model and the Scheimpflug condition on the basis of structure light stereoscopic vision, having benefits of a wide measurement range, high accuracy, fast speed, and low price. The system measurement range is 20 mm×13 mm×6 mm, the lateral resolution is 20 μm, and the practical vertical resolution reaches 2.6 μm, which is close to the theoretical value of 2 μm and well satisfies the 3D measurement needs of micro components such as semiconductor devices, photoelectron elements, and micro-electromechanical systems. In this paper, we first introduce the principle and structure of the system and then present the system calibration and 3D reconstruction. We then present an experiment that was performed for the 3D reconstruction of the surface topography of a wafer, followed by a discussion. Finally, the conclusions are presented.

  8. Determination of a new uniform thorax density representative of the living population from 3D external body shape modeling.

    PubMed

    Amabile, Celia; Choisne, Julie; Nérot, Agathe; Pillet, Hélène; Skalli, Wafa

    2016-05-03

    Body segment parameters (BSP) for each body׳s segment are needed for biomechanical analysis. To provide population-specific BSP, precise estimation of body׳s segments volume and density are needed. Widely used uniform densities, provided by cadavers׳ studies, did not consider the air present in the lungs when determining the thorax density. The purpose of this study was to propose a new uniform thorax density representative of the living population from 3D external body shape modeling. Bi-planar X-ray radiographies were acquired on 58 participants allowing 3D reconstructions of the spine, rib cage and human body shape. Three methods of computing the thorax mass were compared for 48 subjects: (1) the Dempster Uniform Density Method, currently in use for BSPs calculation, using Dempster density data, (2) the Personalized Method using full-description of the thorax based on 3D reconstruction of the rib cage and spine and (3) the Improved Uniform Density Method using a uniform thorax density resulting from the Personalized Method. For 10 participants, comparison was made between the body mass obtained from a force-plate and the body mass computed with each of the three methods. The Dempster Uniform Density Method presented a mean error of 4.8% in the total body mass compared to the force-plate vs 0.2% for the Personalized Method and 0.4% for the Improved Uniform Density Method. The adjusted thorax density found from the 3D reconstruction was 0.74g/cm(3) for men and 0.73g/cm(3) for women instead of the one provided by Dempster (0.92g/cm(3)), leading to a better estimate of the thorax mass and body mass.

  9. Design and fabrication of 3D-printed anatomically shaped lumbar cage for intervertebral disc (IVD) degeneration treatment.

    PubMed

    Serra, T; Capelli, C; Toumpaniari, R; Orriss, I R; Leong, J J H; Dalgarno, K; Kalaskar, D M

    2016-07-19

    Spinal fusion is the gold standard surgical procedure for degenerative spinal conditions when conservative therapies have been unsuccessful in rehabilitation of patients. Novel strategies are required to improve biocompatibility and osseointegration of traditionally used materials for lumbar cages. Furthermore, new design and technologies are needed to bridge the gap due to the shortage of optimal implant sizes to fill the intervertebral disc defect. Within this context, additive manufacturing technology presents an excellent opportunity to fabricate ergonomic shape medical implants. The goal of this study is to design and manufacture a 3D-printed lumbar cage for lumbar interbody fusion. Optimisations of the proposed implant design and its printing parameters were achieved via in silico analysis. The final construct was characterised via scanning electron microscopy, contact angle, x-ray micro computed tomography (μCT), atomic force microscopy, and compressive test. Preliminary in vitro cell culture tests such as morphological assessment and metabolic activities were performed to access biocompatibility of 3D-printed constructs. Results of in silico analysis provided a useful platform to test preliminary cage design and to find an optimal value of filling density for 3D printing process. Surface characterisation confirmed a uniform coating of nHAp with nanoscale topography. Mechanical evaluation showed mechanical properties of final cage design similar to that of trabecular bone. Preliminary cell culture results showed promising results in terms of cell growth and activity confirming biocompatibility of constructs. Thus for the first time, design optimisation based on computational and experimental analysis combined with the 3D-printing technique for intervertebral fusion cage has been reported in a single study. 3D-printing is a promising technique for medical applications and this study paves the way for future development of customised implants in spinal

  10. Novel Processing for Creating 3D Architectured Porous Shape Memory Alloy

    DTIC Science & Technology

    2013-03-01

    Research Office P.O. Box 12211 Research Triangle Park, NC 27709-2211 15. SUBJECT TERMS shape memory alloy, powder metallurgy , digital image...were used as a spaceholder with powder metallography. High carbon steel wires were chosen with a wire diameter of 400 μm. The wires were orthogonally...similar to the method detailed above, in that a composite of NiTi powders and a steel spaceholder frame is created, and the frame is electrochemically

  11. Packing, alignment and flow of shape-anisotropic grains in a 3D silo experiment

    NASA Astrophysics Data System (ADS)

    Börzsönyi, Tamás; Somfai, Ellák; Szabó, Balázs; Wegner, Sandra; Mier, Pascal; Rose, Georg; Stannarius, Ralf

    2016-09-01

    Granular material flowing through bottlenecks, like the openings of silos, tend to clog and thus inhibit further flow. We study this phenomenon in a three-dimensional hopper for spherical and shape-anisotropic particles by means of x-ray tomography. The x-ray tomograms provide information on the bulk of the granular filling, and allows us to determine the particle positions and orientations inside the silo. In addition, it allows us to calculate local packing densities in different parts of the container. We find that in the flowing zone of the silo particles show a preferred orientation and thereby a higher order. Similarly to simple shear flows, the average orientation of the particles is not parallel to the streamlines but encloses a certain angle with it. In most parts of the hopper, the angular distribution of the particles did not reach the one corresponding to stationary shear flow, thus the average orientation angle in the hopper deviates more from the streamlines than in stationary shear flows. In the flowing parts of the silo, shear induced dilation is observed, which is more pronounced for elongated grains than for nearly spherical particles. The clogged state is characterized by a dome, i.e. the geometry of the layer of grains blocking the outflow. The shape of the dome depends on the particle shape.

  12. A local quasicontinuum method for 3D multilattice crystalline materials: Application to shape-memory alloys

    NASA Astrophysics Data System (ADS)

    Sorkin, V.; Elliott, R. S.; Tadmor, E. B.

    2014-07-01

    The quasicontinuum (QC) method, in its local (continuum) limit, is applied to materials with a multilattice crystal structure. Cauchy-Born (CB) kinematics, which accounts for the shifts of the crystal motif, is used to relate atomic motions to continuum deformation gradients. To avoid failures of CB kinematics, QC is augmented with a phonon stability analysis that detects lattice period extensions and identifies the minimum required periodic cell size. This approach is referred to as Cascading Cauchy-Born kinematics (CCB). In this paper, the method is described and developed. It is then used, along with an effective interaction potential (EIP) model for shape-memory alloys, to simulate the shape-memory effect and pseudoelasticity in a finite specimen. The results of these simulations show that (i) the CCB methodology is an essential tool that is required in order for QC-type simulations to correctly capture the first-order phase transitions responsible for these material behaviors, and (ii) that the EIP model adopted in this work coupled with the QC/CCB methodology is capable of predicting the characteristic behavior found in shape-memory alloys.

  13. Two developmental modules establish 3D beak-shape variation in Darwin's finches.

    PubMed

    Mallarino, Ricardo; Grant, Peter R; Grant, B Rosemary; Herrel, Anthony; Kuo, Winston P; Abzhanov, Arhat

    2011-03-08

    Bird beaks display tremendous variation in shape and size, which is closely associated with the exploitation of multiple ecological niches and likely played a key role in the diversification of thousands of avian species. Previous studies have demonstrated some of the molecular mechanisms that regulate morphogenesis of the prenasal cartilage, which forms the initial beak skeleton. However, much of the beak diversity in birds depends on variation in the premaxillary bone. It forms later in development and becomes the most prominent functional and structural component of the adult upper beak/jaw, yet its regulation is unknown. Here, we studied a group of Darwin's finch species with different beak shapes. We found that TGFβIIr, β-catenin, and Dickkopf-3, the top candidate genes from a cDNA microarray screen, are differentially expressed in the developing premaxillary bone of embryos of species with different beak shapes. Furthermore, our functional experiments demonstrate that these molecules form a regulatory network governing the morphology of the premaxillary bone, which differs from the network controlling the prenasal cartilage, but has the same species-specific domains of expression. These results offer potential mechanisms that may explain how the tightly coupled depth and width dimensions can evolve independently. The two-module program of development involving independent regulating molecules offers unique insights into how different developmental pathways may be modified and combined to induce multidimensional shifts in beak morphology. Similar modularity in development may characterize complex traits in other organisms to a greater extent than is currently appreciated.

  14. Precision frequency measurements of He,43 2 3P→3 3D transitions at 588 nm

    NASA Astrophysics Data System (ADS)

    Luo, Pei-Ling; Peng, Jin-Long; Hu, Jinmeng; Feng, Yan; Wang, Li-Bang; Shy, Jow-Tsong

    2016-12-01

    We report the frequency measurements of the 2 3P→3 3D transitions in He,43 at 588 nm using an optical frequency comb stabilized laser system. The Doppler-free spectra of the 2 3P→3 3D transitions are demonstrated in an rf discharged sealed-off helium cell using intermodulated fluorescence spectroscopy. The measured absolute frequency of the 4He2 3P0→3 3D1 transition is 510 059 755.352(28) MHz, which is more precise than the previous measurement by two orders of magnitude. The ionization energies of the 4He2 3P0 and 2 3S1 states can be derived from our result and agree very well with the previous experimental values. More importantly, the Lamb shift of the 2 3S1 state can be deduced to be 4057.086(34) MHz, which is two times more precise than the previous result. In addition, the absolute frequencies of the 2 3P0,1 /2→3 3D1,3 /2 , 2 3P0,1 /2→3 3D1,1 /2 , and 2 3P0,1 /2→3 3D2,3 /2 transitions in 3He are measured. Our precision surpasses the theoretical calculations by more than one to two orders of magnitude. The hyperfine separations of the 3 3D states in 3He and the frequency differences between 4He and 3He transitions are also presented.

  15. Finite element simulation of HIP-process to produce 3d near net shape parts

    SciTech Connect

    Zadeh, M.K.

    1996-12-31

    One of the major problems when producing powder metallurgy parts through hot isostatic pressing (HIP) is the non homogeneous shrinkage of HIP-capsule during the process. This leads to time and cost consuming machining of the HIP parts. In order to reduce the machining to a minimum, one can try to simulate the HIP-process by means of numerical methods. Hereby, the part distortion can be predicted, and hence a new HIP-capsule can be designed in such a way to prevent the distortion partly or even completely. In the following, a finite element method is used, on one hand, to simulate part shrinkage during HIP process; on the other hand a method is integrated in this simulation to optimize the HIP-capsule geometry. For the determination of material dependent parameters, a mixture of theoretical and experimental methods is used. Results of simulation are verified for a complex 3d HIP part out of TiAl6V4.

  16. A 3D modeling and measurement system for cultural heritage preservation

    NASA Astrophysics Data System (ADS)

    Du, Guoguang; Zhou, Mingquan; Ren, Pu; Shui, Wuyang; Zhou, Pengbo; Wu, Zhongke

    2015-07-01

    Cultural Heritage reflects the human production, life style and environmental conditions of various historical periods. It exists as one of the major national carriers of national history and culture. In order to do better protection and utilization for these cultural heritages, a system of three-dimensional (3D) reconstruction and statistical measurement is proposed in this paper. The system solves the problems of cultural heritage's data storage, measurement and analysis. Firstly, for the high precision modeling and measurement problems, range data registration and integration algorithm used to achieve high precision 3D reconstruction. Secondly, multi-view stereo reconstruction method is used to solve the problem of rapid reconstruction by procedures such as the original image data pre-processing, camera calibration, point cloud modeling. At last, the artifacts' measure underlying database is established by calculating the measurements of the 3D model's surface. These measurements contain Euclidean distance between the points on the surface, geodesic distance between the points, normal and curvature in each point, superficial area of a region, volume of model's part and some other measurements. These measurements provide a basis for carrying out information mining of cultural heritage. The system has been applied to the applications of 3D modeling, data measurement of the Terracotta Warriors relics, Tibetan architecture and some other relics.

  17. A correction method of color projection fringes in 3D contour measurement

    NASA Astrophysics Data System (ADS)

    Song, Li-mei; Li, Zong-yan; Chen, Chang-man; Xi, Jiang-tao; Guo, Qing-hua; Li, Xiao-jie

    2015-07-01

    In the three-dimensional (3D) contour measurement, the phase shift profilometry (PSP) method is the most widely used one. However, the measurement speed of PSP is very low because of the multiple projections. In order to improve the measurement speed, color grating stripes are used for measurement in this paper. During the measurement, only one color sinusoidal fringe is projected on the measured object. Therefore, the measurement speed is greatly improved. Since there is coupling or interference phenomenon between the adjacent color grating stripes, a color correction method is used to improve the measurement results. A method for correcting nonlinear error of measurement system is proposed in this paper, and the sinusoidal property of acquired image after correction is better than that before correction. Experimental results show that with these correction methods, the measurement errors can be reduced. Therefore, it can support a good foundation for the high-precision 3D reconstruction.

  18. Reconstruction of 3D Shapes of Opaque Cumulus Clouds from Airborne Multiangle Imaging: A Proof-of-Concept

    NASA Astrophysics Data System (ADS)

    Davis, A. B.; Bal, G.; Chen, J.

    2015-12-01

    Operational remote sensing of microphysical and optical cloud properties is invariably predicated on the assumption of plane-parallel slab geometry for the targeted cloud. The sole benefit of this often-questionable assumption about the cloud is that it leads to one-dimensional (1D) radiative transfer (RT)---a textbook, computationally tractable model. We present new results as evidence that, thanks to converging advances in 3D RT, inverse problem theory, algorithm implementation, and computer hardware, we are at the dawn of a new era in cloud remote sensing where we can finally go beyond the plane-parallel paradigm. Granted, the plane-parallel/1D RT assumption is reasonable for spatially extended stratiform cloud layers, as well as the smoothly distributed background aerosol layers. However, these 1D RT-friendly scenarios exclude cases that are critically important for climate physics. 1D RT---whence operational cloud remote sensing---fails catastrophically for cumuliform clouds that have fully 3D outer shapes and internal structures driven by shallow or deep convection. For these situations, the first order of business in a robust characterization by remote sensing is to abandon the slab geometry framework and determine the 3D geometry of the cloud, as a first step toward bone fide 3D cloud tomography. With this specific goal in mind, we deliver a proof-of-concept for an entirely new kind of remote sensing applicable to 3D clouds. It is based on highly simplified 3D RT and exploits multi-angular suites of cloud images at high spatial resolution. Airborne sensors like AirMSPI readily acquire such data. The key element of the reconstruction algorithm is a sophisticated solution of the nonlinear inverse problem via linearization of the forward model and an iteration scheme supported, where necessary, by adaptive regularization. Currently, the demo uses a 2D setting to show how either vertical profiles or horizontal slices of the cloud can be accurately reconstructed

  19. Reconstructing the 3D shape and bone mineral density distribution of the proximal femur from dual-energy X-ray absorptiometry.

    PubMed

    Whitmarsh, Tristan; Humbert, Ludovic; De Craene, Mathieu; Del Rio Barquero, Luis M; Frangi, Alejandro F

    2011-12-01

    The accurate diagnosis of osteoporosis has gained increasing importance due to the aging of our society. Areal bone mineral density (BMD) measured by dual-energy X-ray absorptiometry (DXA) is an established criterion in the diagnosis of osteoporosis. This measure, however, is limited by its two-dimensionality. This work presents a method to reconstruct both the 3D bone shape and 3D BMD distribution of the proximal femur from a single DXA image used in clinical routine. A statistical model of the combined shape and BMD distribution is presented, together with a method for its construction from a set of quantitative computed tomography (QCT) scans. A reconstruction is acquired in an intensity based 3D-2D registration process whereby an instance of the model is found that maximizes the similarity between its projection and the DXA image. Reconstruction experiments were performed on the DXA images of 30 subjects, with a model constructed from a database of QCT scans of 85 subjects. The accuracy was evaluated by comparing the reconstructions with the same subject QCT scans. The method presented here can potentially improve the diagnosis of osteoporosis and fracture risk assessment from the low radiation dose and low cost DXA devices currently used in clinical routine.

  20. Mechanical Characterization and Shape Optimization of Fascicle-Like 3D Skeletal Muscle Tissues Contracted with Electrical and Optical Stimuli

    PubMed Central

    Neal, Devin; Sakar, Mahmut Selman; Bashir, Rashid; Chan, Vincent

    2015-01-01

    In this study, we present a quantitative approach to construct effective 3D muscle tissues through shape optimization and load impedance matching with electrical and optical stimulation. We have constructed long, thin, fascicle-like skeletal muscle tissue and optimized its form factor through mechanical characterization. A new apparatus was designed and built, which allowed us to measure force–displacement characteristics with diverse load stiffnesses. We have found that (1) there is an optimal form factor that maximizes the muscle stress, (2) the energy transmitted to the load can be maximized with matched load stiffness, and (3) optical stimulation using channelrhodopsin2 in the muscle tissue can generate a twitch force as large as its electrical counterpart for well-developed muscle tissue. Using our tissue construct method, we found that an optimal initial diameter of 500 μm outperformed tissues using 250 μm by more than 60% and tissues using 760 μm by 105%. Using optimal load stiffness, our tissues have generated 12 pJ of energy per twitch at a peak generated stress of 1.28 kPa. Additionally, the difference in optically stimulated twitch performance versus electrically stimulated is a function of how well the overall tissue performs, with average or better performing strips having less than 10% difference. The unique mechanical characterization method used is generalizable to diverse load conditions and will be used to match load impedance to muscle tissue impedance for a wide variety of applications. PMID:25714129

  1. Precisely shaped acoustic ablation of tumors utilizing steerable needle and 3D ultrasound image guidance

    NASA Astrophysics Data System (ADS)

    Boctor, Emad M.; Stolka, Philipp; Kang, Hyun-Jae; Clarke, Clyde; Rucker, Caleb; Croom, Jordon; Burdette, E. Clif; Webster, Robert J., III

    2010-02-01

    Many recent studies have demonstrated the efficacy of interstitial ablative approaches for the treatment of hepatic tumors. Despite these promising results, current systems remain highly dependent on operator skill, and cannot treat many tumors because there is little control of the size and shape of the zone of necrosis, and no control over ablator trajectory within tissue once insertion has taken place. Additionally, tissue deformation and target motion make it extremely difficult to place the ablator device precisely into the target. Irregularly shaped target volumes typically require multiple insertions and several overlapping (thermal) lesions, which are even more challenging to accomplish in a precise, predictable, and timely manner without causing excessive damage to surrounding normal tissues. In answer to these problems, we have developed a steerable acoustic ablator called the ACUSITT with the ability of directional energy delivery to precisely shape the applied thermal dose . In this paper, we address image guidance for this device, proposing an innovative method for accurate tracking and tool registration with spatially-registered intra-operative three-dimensional US volumes, without relying on an external tracking device. This method is applied to guid-ance of the flexible, snake-like, lightweight, and inexpensive ACUSITT to facilitate precise placement of its ablator tip within the liver, with ablation monitoring via strain imaging. Recent advancements in interstitial high-power ultrasound applicators enable controllable and penetrating heating patterns which can be dynamically altered. This paper summarizes the design and development of the first synergistic system that integrates a novel steerable interstitial acoustic ablation device with a novel trackerless 3DUS guidance strategy.

  2. Dynamic-Data Driven Modeling of Uncertainties and 3D Effects of Porous Shape Memory Alloys

    DTIC Science & Technology

    2014-02-03

    heating the SMA. The cooling time is still an issue. SMAs have a limited life span due to naturally occurring fatigue in the alloy. Micro scale crystal...mathematical model for Joule heated SMAs. In Section 3 we describe the virtual shaker device and the DDDAS. In Section 4 we discuss personnel and...properties of SMAs (Sec. 2.1) and a mathematical model for Joule heated SMAs (Sec. 2.2). 2.1. Properties of SMAs Shape memory alloys (SMAs) and

  3. Materials ``alchemy'': Shape-preserving chemical transformation of micro-to-macroscopic 3-D structures

    NASA Astrophysics Data System (ADS)

    Sandhage, Kenneth H.

    2010-06-01

    The scalable fabrication of nano-structured materials with complex morphologies and tailorable chemistries remains a significant challenge. One strategy for such synthesis consists of the generation of a solid structure with a desired morphology (a “preform”), followed by reactive conversion of the preform into a new chemistry. Several gas/solid and liquid/solid reaction processes that are capable of such chemical conversion into new micro-to-nano-structured materials, while preserving the macroscopic-to-microscopic preform morphologies, are described in this overview. Such shape-preserving chemical transformation of one material into another could be considered a modern type of materials “alchemy.”

  4. Digital holography particle image velocimetry for the measurement of 3D t-3c flows

    NASA Astrophysics Data System (ADS)

    Shen, Gongxin; Wei, Runjie

    2005-10-01

    In this paper a digital in-line holographic recording and reconstruction system was set up and used in the particle image velocimetry for the 3D t-3c (the three-component (3c), velocity vector field measurements in a three-dimensional (3D), space field with time history ( t)) flow measurements that made up of the new full-flow field experimental technique—digital holographic particle image velocimetry (DHPIV). The traditional holographic film was replaced by a CCD chip that records instantaneously the interference fringes directly without the darkroom processing, and the virtual image slices in different positions were reconstructed by computation using Fresnel-Kirchhoff integral method from the digital holographic image. Also a complex field signal filter (analyzing image calculated by its intensity and phase from real and image parts in fast fourier transform (FFT)) was applied in image reconstruction to achieve the thin focus depth of image field that has a strong effect with the vertical velocity component resolution. Using the frame-straddle CCD device techniques, the 3c velocity vector was computed by 3D cross-correlation through space interrogation block matching through the reconstructed image slices with the digital complex field signal filter. Then the 3D-3c-velocity field (about 20 000 vectors), 3D-streamline and 3D-vorticiry fields, and the time evolution movies (30 field/s) for the 3D t-3c flows were displayed by the experimental measurement using this DHPIV method and techniques.

  5. High Accuracy Acquisition of 3-D Flight Trajectory of Individual Insect Based on Phase Measurement.

    PubMed

    Hu, Cheng; Deng, Yunkai; Wang, Rui; Liu, Changjiang; Long, Teng

    2016-12-17

    Accurate acquisition of 3-D flight trajectory of individual insect could be of benefit to the research of insect migration behaviors and the development of migratory entomology. This paper proposes a novel method to acquire 3-D flight trajectory of individual insect. First, based on the high range resolution synthesizing and the Doppler coherent processing, insects can be detected effectively, and the range resolution and velocity resolution are combined together to discriminate insects. Then, high accuracy range measurement with the carrier phase is proposed. The range measurement accuracy can reach millimeter level and benefits the acquisition of 3-D trajectory information significantly. Finally, based on the multi-baselines interferometry theory, the azimuth and elevation angles can be obtained with high accuracy. Simulation results prove that the retrieval accuracy of a simulated target's 3-D coordinates can reach centimeter level. Experiments utilizing S-band radar in an anechoic chamber were taken and results showed that the insects' flight behaviors and 3-D coordinates' variation matched the practical cases well. In conclusion, both the simulated and experimental datasets validate the feasibility of the proposed method, which could be a novel measurement way of monitoring flight trajectory of aerial free-fly insects.

  6. High Accuracy Acquisition of 3-D Flight Trajectory of Individual Insect Based on Phase Measurement

    PubMed Central

    Hu, Cheng; Deng, Yunkai; Wang, Rui; Liu, Changjiang; Long, Teng

    2016-01-01

    Accurate acquisition of 3-D flight trajectory of individual insect could be of benefit to the research of insect migration behaviors and the development of migratory entomology. This paper proposes a novel method to acquire 3-D flight trajectory of individual insect. First, based on the high range resolution synthesizing and the Doppler coherent processing, insects can be detected effectively, and the range resolution and velocity resolution are combined together to discriminate insects. Then, high accuracy range measurement with the carrier phase is proposed. The range measurement accuracy can reach millimeter level and benefits the acquisition of 3-D trajectory information significantly. Finally, based on the multi-baselines interferometry theory, the azimuth and elevation angles can be obtained with high accuracy. Simulation results prove that the retrieval accuracy of a simulated target’s 3-D coordinates can reach centimeter level. Experiments utilizing S-band radar in an anechoic chamber were taken and results showed that the insects’ flight behaviors and 3-D coordinates’ variation matched the practical cases well. In conclusion, both the simulated and experimental datasets validate the feasibility of the proposed method, which could be a novel measurement way of monitoring flight trajectory of aerial free-fly insects. PMID:27999317

  7. 3D-Laser-Scanning Technique Applied to Bulk Density Measurements of Apollo Lunar Samples

    NASA Technical Reports Server (NTRS)

    Macke, R. J.; Kent, J. J.; Kiefer, W. S.; Britt, D. T.

    2015-01-01

    In order to better interpret gravimetric data from orbiters such as GRAIL and LRO to understand the subsurface composition and structure of the lunar crust, it is import to have a reliable database of the density and porosity of lunar materials. To this end, we have been surveying these physical properties in both lunar meteorites and Apollo lunar samples. To measure porosity, both grain density and bulk density are required. For bulk density, our group has historically utilized sub-mm bead immersion techniques extensively, though several factors have made this technique problematic for our work with Apollo samples. Samples allocated for measurement are often smaller than optimal for the technique, leading to large error bars. Also, for some samples we were required to use pure alumina beads instead of our usual glass beads. The alumina beads were subject to undesirable static effects, producing unreliable results. Other investigators have tested the use of 3d laser scanners on meteorites for measuring bulk volumes. Early work, though promising, was plagued with difficulties including poor response on dark or reflective surfaces, difficulty reproducing sharp edges, and large processing time for producing shape models. Due to progress in technology, however, laser scanners have improved considerably in recent years. We tested this technique on 27 lunar samples in the Apollo collection using a scanner at NASA Johnson Space Center. We found it to be reliable and more precise than beads, with the added benefit that it involves no direct contact with the sample, enabling the study of particularly friable samples for which bead immersion is not possible

  8. Assessment of eye fatigue caused by 3D displays based on multimodal measurements.

    PubMed

    Bang, Jae Won; Heo, Hwan; Choi, Jong-Suk; Park, Kang Ryoung

    2014-09-04

    With the development of 3D displays, user's eye fatigue has been an important issue when viewing these displays. There have been previous studies conducted on eye fatigue related to 3D display use, however, most of these have employed a limited number of modalities for measurements, such as electroencephalograms (EEGs), biomedical signals, and eye responses. In this paper, we propose a new assessment of eye fatigue related to 3D display use based on multimodal measurements. compared to previous works Our research is novel in the following four ways: first, to enhance the accuracy of assessment of eye fatigue, we measure EEG signals, eye blinking rate (BR), facial temperature (FT), and a subjective evaluation (SE) score before and after a user watches a 3D display; second, in order to accurately measure BR in a manner that is convenient for the user, we implement a remote gaze-tracking system using a high speed (mega-pixel) camera that measures eye blinks of both eyes; thirdly, changes in the FT are measured using a remote thermal camera, which can enhance the measurement of eye fatigue, and fourth, we perform various statistical analyses to evaluate the correlation between the EEG signal, eye BR, FT, and the SE score based on the T-test, correlation matrix, and effect size. Results show that the correlation of the SE with other data (FT, BR, and EEG) is the highest, while those of the FT, BR, and EEG with other data are second, third, and fourth highest, respectively.

  9. Improvements on digital inline holographic PTV for 3D wall-bounded turbulent flow measurements

    NASA Astrophysics Data System (ADS)

    Toloui, Mostafa; Mallery, Kevin; Hong, Jiarong

    2017-04-01

    Three-dimensional (3D) particle image velocimetry (PIV) and particle tracking velocimetry (PTV) provide the most comprehensive flow information for unraveling the physical phenomena in a wide range of fluid problems, from microfluidics to wall-bounded turbulent flows. Compared with other 3D PIV techniques, such as tomographic PIV and defocusing PIV, the digital inline holographic PTV (DIH-PTV) provides 3D flow measurement solution with high spatial resolution, low cost optical setup, and easy alignment and calibration. Despite these advantages, DIH-PTV suffers from major limitations including poor longitudinal resolution, human intervention (i.e. requirement for manually determined tuning parameters during tracer field reconstruction and extraction), limited tracer concentration, small sampling volume and expensive computations, limiting its broad use for 3D flow measurements. In this study, we present our latest developments on minimizing these challenges, which enables high-fidelity DIH-PTV implementation to larger sampling volumes with significantly higher particle seeding densities suitable for wall-bounded turbulent flow measurements. The improvements include: (1) adjustable window thresholding; (2) multi-pass 3D tracking; (3) automatic wall localization; and (4) continuity-based out-of-plane velocity component computation. The accuracy of the proposed DIH-PTV method is validated with conventional 2D PIV and double-view holographic PTV measurements in smooth-wall turbulent channel flow experiments. The capability of the technique in characterization of wall-bounded turbulence is further demonstrated through its application to flow measurements for smooth- and rough-wall turbulent channel flows. In these experiments, 3D velocity fields are measured within sampling volumes of 14.7  ×  50.0  ×  14.4 mm3 (covering the entire depth of the channel) with a velocity resolution of  <1.1 mm/vector. Overall, the presented DIH-PTV method and

  10. Holographic particle velocimetry - A 3D measurement technique for vortex interactions, coherent structures and turbulence

    NASA Astrophysics Data System (ADS)

    Meng, Hui; Hussain, Fazle

    1991-10-01

    To understand the topology and dynamics of coherent structures (CS), the interactions of CS with fine-scale turbulence, and the effects of CS on entrainment, mixing and combustion, experimental tools are needed that can measure velocity (preferably vorticity) vector fields in both 3D space and time. While traditional measurement techniques are not able to serve this purpose, holographic particle velocimetry (HPV) appears to be promising. In a demonstration experiment, the instantaneous 3D velocity vector fields in some simple vortical flows have been obtained using the HPV technique. In this preliminary report, the principles of the HPV technique are illustrated and the key issues in its implementation are discussed.

  11. Segmentation and length measurement of the abdominal blood vessels in 3-D MRI images.

    PubMed

    Babin, Danilo; Vansteenkiste, Ewout; Pizurica, Aleksandra; Philips, Wilfried

    2009-01-01

    In diagnosing diseases and planning surgeries the structure and length of blood vessels is of great importance. In this research we develop a novel method for the segmentation of 2-D and 3-D images with an application to blood vessel length measurements in 3-D abdominal MRI images. Our approach is robust to noise and does not require contrast-enhanced images for segmentation. We use an effective algorithm for skeletonization, graph construction and shortest path estimation to measure the length of blood vessels of interest.

  12. The influence of CNC milling and ball burnishing on shaping complex 3D surfaces

    NASA Astrophysics Data System (ADS)

    Bachtiak-Radka, Emilia; Dudzińska, Sara; Grochała, Daniel; Berczyński, Stefan; Olszak, Wiesław

    2017-03-01

    Hybrid techniques for surface treatment should ensure compliance with exterior layer state and stress requirements. The more factors which influence final treatment effects, the more difficult it is to conduct a technological process combining different treatment methods. A combination of shaping milling with finishing burnishing can provide very good smoothness and satisfactory stress conditions. However, implementation of predefined geometric surface specifications (GPS) is very difficult. This article presents the results of the effect of technological parameters of both treatments combined into a single operation on surface topography. A new surface geometry evaluation approach, combining both relative and absolute changes of isotropy and surface roughness, enabling an objective efficiency comparison of machining operations combined in a single operation, is presented.

  13. 3-D Modeling of Modifications to the Z Accelerator for Generating Shaped Pulses

    NASA Astrophysics Data System (ADS)

    Pointon, Timothy D.; Savage, Mark E.; Harjes, Henry C.

    2002-12-01

    One option to temporally shape the power pulse at the load on the Z accelerator at Sandia National Laboratories is timing delays between the 36 pulse-forming lines. However, this can lead to the formation of magnetic nulls in the vacuum section, with the potential for greatly increasing electron losses to—and possibly damaging—the anode. Three-dimensional computer simulations are now being conducted to study this concern. The simulation geometry models a single level of Z, with a radial transmission line driven by nine parallel-plate lines. Every third line is driven early relative to the other six. Results from preliminary runs without particle emission are presented. Voltage and current diagnostics agree quite well with circuit simulations, and spatial field profiles illustrate the evolution of the magnetic nulls in detail.

  14. 3D shapes of aryl(dihydro)naphthothiophenes: a comprehensive and structural study.

    PubMed

    Boufroura, H; Souibgui, A; Gaucher, A; Marrot, J; Pieters, G; Aloui, F; Ben Hassine, B; Clavier, G; Prim, D

    2015-11-28

    Convenient access to new aryl(dihydro)naphthothiophenes is described using a common β-chloroacrolein derivative. Our strategy is based on the construction of a condensed thiophene ring prior to a Suzuki-Miyaura coupling and allowed installing various substituents at the molecular platform. The overall shapes of these architectures were confirmed by X-ray analyses and were in good agreement with theoretical calculations. It has been established that the relative orientation between all fragments that composed molecules within this series is strongly related to both steric and electronic factors. Contribution of these key parameters revealed to be crucial to rationalize attempts to prepare fluorenone and fluorene derivatives from aryl(dihydro)naphthothiophene platforms.

  15. The use of 3D surface scanning for the measurement and assessment of the human foot

    PubMed Central

    2010-01-01

    Background A number of surface scanning systems with the ability to quickly and easily obtain 3D digital representations of the foot are now commercially available. This review aims to present a summary of the reported use of these technologies in footwear development, the design of customised orthotics, and investigations for other ergonomic purposes related to the foot. Methods The PubMed and ScienceDirect databases were searched. Reference lists and experts in the field were also consulted to identify additional articles. Studies in English which had 3D surface scanning of the foot as an integral element of their protocol were included in the review. Results Thirty-eight articles meeting the search criteria were included. Advantages and disadvantages of using 3D surface scanning systems are highlighted. A meta-analysis of studies using scanners to investigate the changes in foot dimensions during varying levels of weight bearing was carried out. Conclusions Modern 3D surface scanning systems can obtain accurate and repeatable digital representations of the foot shape and have been successfully used in medical, ergonomic and footwear development applications. The increasing affordability of these systems presents opportunities for researchers investigating the foot and for manufacturers of foot related apparel and devices, particularly those interested in producing items that are customised to the individual. Suggestions are made for future areas of research and for the standardization of the protocols used to produce foot scans. PMID:20815914

  16. Image based cardiac acceleration map using statistical shape and 3D+t myocardial tracking models; in-vitro study on heart phantom

    NASA Astrophysics Data System (ADS)

    Pashaei, Ali; Piella, Gemma; Planes, Xavier; Duchateau, Nicolas; de Caralt, Teresa M.; Sitges, Marta; Frangi, Alejandro F.

    2013-03-01

    It has been demonstrated that the acceleration signal has potential to monitor heart function and adaptively optimize Cardiac Resynchronization Therapy (CRT) systems. In this paper, we propose a non-invasive method for computing myocardial acceleration from 3D echocardiographic sequences. Displacement of the myocardium was estimated using a two-step approach: (1) 3D automatic segmentation of the myocardium at end-diastole using 3D Active Shape Models (ASM); (2) propagation of this segmentation along the sequence using non-rigid 3D+t image registration (temporal di eomorphic free-form-deformation, TDFFD). Acceleration was obtained locally at each point of the myocardium from local displacement. The framework has been tested on images from a realistic physical heart phantom (DHP-01, Shelley Medical Imaging Technologies, London, ON, CA) in which the displacement of some control regions was known. Good correlation has been demonstrated between the estimated displacement function from the algorithms and the phantom setup. Due to the limited temporal resolution, the acceleration signals are sparse and highly noisy. The study suggests a non-invasive technique to measure the cardiac acceleration that may be used to improve the monitoring of cardiac mechanics and optimization of CRT.

  17. Isoparametric fitting: A method for approximating full-field experimental data distributed on any shaped 3D domain

    NASA Astrophysics Data System (ADS)

    Bruno, Luigi

    2016-12-01

    With the present paper, the author proposes a fitting method for approximating experimental data retrieved from any full-field technique. Unlike most of the fitting procedures, the method works on data distributed on a surface of any shape, and the mathematical model is able to take into account of both the 3D shape of the surface and of the experimental quantity to be fitted. The paper reports all the mathematical steps necessary for applying the method, which was tested on two sets of experimental data obtained by an out-of-plane speckle interferometer working in two different conditions of noise. Experimental results showed the capability of the method to work in presence of high level of noise.

  18. Multidirectional four-dimensional shape measurement system

    NASA Astrophysics Data System (ADS)

    Lenar, Janusz; Sitnik, Robert; Witkowski, Marcin

    2012-03-01

    Currently, a lot of different scanning techniques are used for 3D imaging of human body. Most of existing systems are based on static registration of internal structures using MRI or CT techniques as well as 3D scanning of outer surface of human body by laser triangulation or structured light methods. On the other hand there is an existing mature 4D method based on tracking in time the position of retro-reflective markers attached to human body. There are two main drawbacks of this solution: markers are attached to skin (no real skeleton movement is registered) and it gives (x, y, z, t) coordinates only in those points (not for the whole surface). In this paper we present a novel multidirectional structured light measurement system that is capable of measuring 3D shape of human body surface with frequency reaching 60Hz. The developed system consists of two spectrally separated and hardware-synchronized 4D measurement heads. The principle of the measurement is based on single frame analysis. Projected frame is composed from sine-modulated intensity pattern and a special stripe allowing absolute phase measurement. Several different geometrical set-ups will be proposed depending on type of movements that are to be registered.

  19. a Method of 3d Measurement and Reconstruction for Cultural Relics in Museums

    NASA Astrophysics Data System (ADS)

    Zheng, S.; Zhou, Y.; Huang, R.; Zhou, L.; Xu, X.; Wang, C.

    2012-07-01

    Three-dimensional measurement and reconstruction during conservation and restoration of cultural relics have become an essential part of a modem museum regular work. Although many kinds of methods including laser scanning, computer vision and close-range photogrammetry have been put forward, but problems still exist, such as contradiction between cost and good result, time and fine effect. Aimed at these problems, this paper proposed a structure-light based method for 3D measurement and reconstruction of cultural relics in museums. Firstly, based on structure-light principle, digitalization hardware has been built and with its help, dense point cloud of cultural relics' surface can be easily acquired. To produce accurate 3D geometry model from point cloud data, multi processing algorithms have been developed and corresponding software has been implemented whose functions include blunder detection and removal, point cloud alignment and merge, 3D mesh construction and simplification. Finally, high-resolution images are captured and the alignment of these images and 3D geometry model is conducted and realistic, accurate 3D model is constructed. Based on such method, a complete system including hardware and software are built. Multi-kinds of cultural relics have been used to test this method and results prove its own feature such as high efficiency, high accuracy, easy operation and so on.

  20. Early pregnancy placental bed and fetal vascular volume measurements using 3-D virtual reality.

    PubMed

    Reus, Averil D; Klop-van der Aa, Josine; Rifouna, Maria S; Koning, Anton H J; Exalto, Niek; van der Spek, Peter J; Steegers, Eric A P

    2014-08-01

    In this study, a new 3-D Virtual Reality (3D VR) technique for examining placental and uterine vasculature was investigated. The validity of placental bed vascular volume (PBVV) and fetal vascular volume (FVV) measurements was assessed and associations of PBVV and FVV with embryonic volume, crown-rump length, fetal birth weight and maternal parity were investigated. One hundred thirty-two patients were included in this study, and measurements were performed in 100 patients. Using V-Scope software, 100 3-D Power Doppler data sets of 100 pregnancies at 12 wk of gestation were analyzed with 3D VR in the I-Space Virtual Reality system. Volume measurements were performed with semi-automatic, pre-defined parameters. The inter-observer and intra-observer agreement was excellent with all intra-class correlation coefficients >0.93. PBVVs of multiparous women were significantly larger than the PBVVs of primiparous women (p = 0.008). In this study, no other associations were found. In conclusion, V-Scope offers a reproducible method for measuring PBVV and FVV at 12 wk of gestation, although we are unsure whether the volume measured represents the true volume of the vasculature. Maternal parity influences PBVV.

  1. 3-D shape analysis of palatal surface in patients with unilateral complete cleft lip and palate.

    PubMed

    Rusková, Hana; Bejdová, Sárka; Peterka, Miroslav; Krajíček, Václav; Velemínská, Jana

    2014-07-01

    Facial development of patients with unilateral complete cleft lip and palate (UCLP) is associated with many problems including deformity of the palate. The aim of this study was to evaluate palatal morphology and variability in patients with UCLP compared with Czech norms using methods of geometric morphometrics. The study was based on virtual dental cast analysis of 29 UCLP patients and 29 control individuals at the age of 15 years. The variability of palatal shape in UCLP patients was greater than that in nonclefted palates. Only 24% of clefted palates fell within the variability of controls. The palatal form of UCLP patients (range from 11.8 to 17.2 years) was not correlated with age. Compared with control palates, palates of UCLP patients were narrower, more anteriorly than posteriorly. Apart from the praemaxilla region, they were also shallower, and the difference increased posteriorly. The UCLP palate was characterised by the asymmetry of its vault. The maximum height of the palatal vault was anterior on the clefted side, whereas it was posterior on the nonclefted side. The slope of the UCLP palate was more inclined compared with the control group. The praemaxilla was therefore situated more inferiorly.

  2. Accurate 3D kinematic measurement of temporomandibular joint using X-ray fluoroscopic images

    NASA Astrophysics Data System (ADS)

    Yamazaki, Takaharu; Matsumoto, Akiko; Sugamoto, Kazuomi; Matsumoto, Ken; Kakimoto, Naoya; Yura, Yoshiaki

    2014-04-01

    Accurate measurement and analysis of 3D kinematics of temporomandibular joint (TMJ) is very important for assisting clinical diagnosis and treatment of prosthodontics and orthodontics, and oral surgery. This study presents a new 3D kinematic measurement technique of the TMJ using X-ray fluoroscopic images, which can easily obtain the TMJ kinematic data in natural motion. In vivo kinematics of the TMJ (maxilla and mandibular bone) is determined using a feature-based 2D/3D registration, which uses beads silhouette on fluoroscopic images and 3D surface bone models with beads. The 3D surface models of maxilla and mandibular bone with beads were created from CT scans data of the subject using the mouthpiece with the seven strategically placed beads. In order to validate the accuracy of pose estimation for the maxilla and mandibular bone, computer simulation test was performed using five patterns of synthetic tantalum beads silhouette images. In the clinical applications, dynamic movement during jaw opening and closing was conducted, and the relative pose of the mandibular bone with respect to the maxilla bone was determined. The results of computer simulation test showed that the root mean square errors were sufficiently smaller than 1.0 mm and 1.0 degree. In the results of clinical application, during jaw opening from 0.0 to 36.8 degree of rotation, mandibular condyle exhibited 19.8 mm of anterior sliding relative to maxillary articular fossa, and these measurement values were clinically similar to the previous reports. Consequently, present technique was thought to be suitable for the 3D TMJ kinematic analysis.

  3. Pipeline inwall 3D measurement system based on the cross structured light

    NASA Astrophysics Data System (ADS)

    Shen, Da; Lin, Zhipeng; Xue, Lei; Zheng, Qiang; Wang, Zichi

    2014-01-01

    In order to accurately realize the defect detection of pipeline inwall, this paper proposes a measurement system made up of cross structured light, single CCD camera and a smart car, etc. Based on structured light measurement technology, this paper mainly introduces the structured light measurement system, the imaging mathematical model, and the parameters and method of camera calibration. Using these measuring principles and methods, the camera in remote control car platform achieves continuous shooting of objects and real-time rebound processing as well as utilizing established model to extract 3D point cloud coordinate to reconstruct pipeline defects, so it is possible to achieve 3D automatic measuring, and verifies the correctness and feasibility of this system. It has been found that this system has great measurement accuracy in practice.

  4. 3-D Facial Landmark Localization With Asymmetry Patterns and Shape Regression from Incomplete Local Features.

    PubMed

    Sukno, Federico M; Waddington, John L; Whelan, Paul F

    2015-09-01

    We present a method for the automatic localization of facial landmarks that integrates nonrigid deformation with the ability to handle missing points. The algorithm generates sets of candidate locations from feature detectors and performs combinatorial search constrained by a flexible shape model. A key assumption of our approach is that for some landmarks there might not be an accurate candidate in the input set. This is tackled by detecting partial subsets of landmarks and inferring those that are missing, so that the probability of the flexible model is maximized. The ability of the model to work with incomplete information makes it possible to limit the number of candidates that need to be retained, drastically reducing the number of combinations to be tested with respect to the alternative of trying to always detect the complete set of landmarks. We demonstrate the accuracy of the proposed method in the face recognition grand challenge database, where we obtain average errors of approximately 3.5 mm when targeting 14 prominent facial landmarks. For the majority of these our method produces the most accurate results reported to date in this database. Handling of occlusions and surfaces with missing parts is demonstrated with tests on the Bosphorus database, where we achieve an overall error of 4.81 and 4.25 mm for data with and without occlusions, respectively. To investigate potential limits in the accuracy that could be reached, we also report experiments on a database of 144 facial scans acquired in the context of clinical research, with manual annotations performed by experts, where we obtain an overall error of 2.3 mm, with averages per landmark below 3.4 mm for all 14 targeted points and within 2 mm for half of them. The coordinates of automatically located landmarks are made available on-line.

  5. Development of a 3-D Measuring System for Upper Limb Movements Using Image Processing

    NASA Astrophysics Data System (ADS)

    Ogata, Kohichi; Toume, Tadashi; Nakanishi, Ryoji

    This paper describes a 3-D motion capture system for the quantitative evaluation of a finger-nose test using image processing. In the field of clinical medicine, qualitative and quantitative evaluation of voluntary movements is necessary for correct diagnosis of disorders. For this purpose, we have developed a 3-D measuring system with a multi-camera system. The configuration of the system is described and examples of movement data are shown for normal subjects and patients. In the finger-nose test at a fast trial speed, a discriminant analysis using Maharanobis generalized distances shows a discriminant rate of 93% between normal subjects and spinocerebellar degeneration(SCD) patients.

  6. Quick and low cost measurement of soil parameters using a Kinect 3D scanner

    NASA Astrophysics Data System (ADS)

    Hut, R.; Van De Giesen, N.; Hagenaars, R.

    2013-12-01

    Retrieval of basic soil parameters such as bulk density and soil moisture from soil samples is a costly and time-consuming activity. Although indirect methods (heat or electromagnetic probes, radar backscatter, etc) are abundant, field truth measurement of soil parameters will remain important, if only to calibrate these other methods. We present a quick, field mountable setup to make 3D scans of surfaces up to 30 x 30 cm using a Kinect 3D scanner. By making scans before and after samples are taken, parameters such as bulk density and moisture content can easily be calculated.

  7. Application of robust color composite fringe in flip-chip solder bump 3-D measurement

    NASA Astrophysics Data System (ADS)

    Kuo, Chung-Feng Jeffrey; Wu, Han-Cheng

    2017-04-01

    This study developed a 3-D measurement system based on flip-chip solder bump, used fringes with different modulation intensities in color channels, in order to produce color composite fringe with robustness, and proposed a multi-channel composite phase unwrapping algorithm, which uses fringe modulation weights of different channels to recombine the phase information for better measurement accuracy and stability. The experimental results showed that the average measurement accuracy is 0.43μm and the standard deviation is 1.38 μm. The results thus proved that the proposed 3-D measurement system is effective in measuring a plane with a height of 50 μm. In the flip-chip solder bump measuring experiment, different fringe modulation configurations were tested to overcome the problem of reflective coefficient between the flip-chip base board and the solder bump. The proposed system has a good measurement results and robust stability in the solder bump measurement, and can be used for the measurement of 3-D information for micron flip-chip solder bump application.

  8. Mixed-scale channel networks including Kingfisher-beak-shaped 3D microfunnels for efficient single particle entrapment

    NASA Astrophysics Data System (ADS)

    Lee, Yunjeong; Lim, Yeongjin; Shin, Heungjoo

    2016-06-01

    Reproducible research results for nanofluidics and their applications require viable fabrication technologies to produce nanochannels integrated with microchannels that can guide fluid flow and analytes into/out of the nanochannels. We present the simple fabrication of mixed-scale polydimethylsiloxane (PDMS) channel networks consisting of nanochannels and microchannels via a single molding process using a monolithic mixed-scale carbon mold. The monolithic carbon mold is fabricated by pyrolyzing a polymer mold patterned by photolithography. During pyrolysis, the polymer mold shrinks by ~90%, which enables nanosized carbon molds to be produced without a complex nanofabrication process. Because of the good adhesion between the polymer mold and the Si substrate, non-uniform volume reduction occurs during pyrolysis resulting in the formation of curved carbon mold side walls. These curved side walls and the relatively low surface energy of the mold provide efficient demolding of the PDMS channel networks. In addition, the trigonal prismatic shape of the polymer is converted into to a Kingfisher-beak-shaped carbon structure due to the non-uniform volume reduction. The transformation of this mold architecture produces a PDMS Kingfisher-beak-shaped 3D microfunnel that connects the microchannel and the nanochannel smoothly. The smooth reduction in the cross-sectional area of the 3D microfunnels enables efficient single microparticle trapping at the nanochannel entrance; this is beneficial for studies of cell transfection.Reproducible research results for nanofluidics and their applications require viable fabrication technologies to produce nanochannels integrated with microchannels that can guide fluid flow and analytes into/out of the nanochannels. We present the simple fabrication of mixed-scale polydimethylsiloxane (PDMS) channel networks consisting of nanochannels and microchannels via a single molding process using a monolithic mixed-scale carbon mold. The monolithic

  9. 3D nonrigid medical image registration using a new information theoretic measure

    NASA Astrophysics Data System (ADS)

    Li, Bicao; Yang, Guanyu; Coatrieux, Jean Louis; Li, Baosheng; Shu, Huazhong

    2015-11-01

    This work presents a novel method for the nonrigid registration of medical images based on the Arimoto entropy, a generalization of the Shannon entropy. The proposed method employed the Jensen-Arimoto divergence measure as a similarity metric to measure the statistical dependence between medical images. Free-form deformations were adopted as the transformation model and the Parzen window estimation was applied to compute the probability distributions. A penalty term is incorporated into the objective function to smooth the nonrigid transformation. The goal of registration is to optimize an objective function consisting of a dissimilarity term and a penalty term, which would be minimal when two deformed images are perfectly aligned using the limited memory BFGS optimization method, and thus to get the optimal geometric transformation. To validate the performance of the proposed method, experiments on both simulated 3D brain MR images and real 3D thoracic CT data sets were designed and performed on the open source elastix package. For the simulated experiments, the registration errors of 3D brain MR images with various magnitudes of known deformations and different levels of noise were measured. For the real data tests, four data sets of 4D thoracic CT from four patients were selected to assess the registration performance of the method, including ten 3D CT images for each 4D CT data covering an entire respiration cycle. These results were compared with the normalized cross correlation and the mutual information methods and show a slight but true improvement in registration accuracy.

  10. Validity Study of Vertebral Rotation Measurement Using 3-D Ultrasound in Adolescent Idiopathic Scoliosis.

    PubMed

    Wang, Qian; Li, Meng; Lou, Edmond H M; Chu, Winnie C W; Lam, Tsz-Ping; Cheng, Jack C Y; Wong, Man-Sang

    2016-07-01

    This study aimed to assess the validity of 3-D ultrasound measurements on the vertebral rotation of adolescent idiopathic scoliosis (AIS) under clinical settings. Thirty curves (mean Cobb angle: 21.7° ± 15.9°) from 16 patients with AIS were recruited. 3-D ultrasound and magnetic resonance imaging scans were performed at the supine position. Each of the two raters measured the apical vertebral rotation using the center of laminae (COL) method in the 3-D ultrasound images and the Aaro-Dahlborn method in the magnetic resonance images. The intra- and inter-reliability of the COL method was demonstrated by the intra-class correlation coefficient (ICC) (both [2, K] >0.9, p < 0.05). The COL method showed no significant difference (p < 0.05) compared with the Aaro-Dahlborn method. Furthermore, the agreement between these two methods was demonstrated by the Bland-Altman method, and high correlation was found (r > 0.9, p < 0.05). These results validated the proposed 3-D ultrasound method in the measurements of vertebral rotation in the patients with AIS.

  11. Simultaneous 3D Strain and Flow Fields Measurement of a Model Artery under Unsteady Flows

    NASA Astrophysics Data System (ADS)

    Toloui, Mostafa; Sheng, Jian

    2011-11-01

    Fluid-Structure Interaction imposes challenges in both aero-elasticity and biomedical studies. A simultaneous solid deformation and fluid flow measurement technique based on digital in-line holographic particle tracking velocimetry (PTV) has been developed. It allows us to measure concurrently 3D strain field of a deforming structure and the unsteady flow near it. To facilitate the measurement, both wall and flow are seeded with tracer particles distinguished by size. The motion of these tracers provides the 3D deformation of the wall and the 3D velocity distribution of the flow separately. A fully index matched facility including transparent artery and NaI solution is constructed to enable observations near the wall or through the complex geometry. An arterial model with the inner diameter of 9.5 mm and the thickness of 0.9 mm is manufactured from the cross-linked transparent PDMS at the mixing ratio of 1:10 and doped with mono-dispersed 19 μm polystyrene particles. A cinematic holographic PTV system is used to trace the 3D particle motion in the model and flow simultaneously. Preliminary study is performed within a sample volume of 15 × 15 × 75 mm with the spatial resolution of 7.4 μm in lateral and 10 μm in depth. Uncertainty and accuracy analysis will be reported. NSF Grant No: CBET-0844647.

  12. Real-Time Estimation of 3-D Needle Shape and Deflection for MRI-Guided Interventions

    PubMed Central

    Park, Yong-Lae; Elayaperumal, Santhi; Daniel, Bruce; Ryu, Seok Chang; Shin, Mihye; Savall, Joan; Black, Richard J.; Moslehi, Behzad; Cutkosky, Mark R.

    2015-01-01

    We describe a MRI-compatible biopsy needle instrumented with optical fiber Bragg gratings for measuring bending deflections of the needle as it is inserted into tissues. During procedures, such as diagnostic biopsies and localized treatments, it is useful to track any tool deviation from the planned trajectory to minimize positioning errors and procedural complications. The goal is to display tool deflections in real time, with greater bandwidth and accuracy than when viewing the tool in MR images. A standard 18 ga × 15 cm inner needle is prepared using a fixture, and 350-μm-deep grooves are created along its length. Optical fibers are embedded in the grooves. Two sets of sensors, located at different points along the needle, provide an estimate of the bent profile, as well as temperature compensation. Tests of the needle in a water bath showed that it produced no adverse imaging artifacts when used with the MR scanner. PMID:26405428

  13. Left-ventricle segmentation in real-time 3D echocardiography using a hybrid active shape model and optimal graph search approach

    NASA Astrophysics Data System (ADS)

    Zhang, Honghai; Abiose, Ademola K.; Campbell, Dwayne N.; Sonka, Milan; Martins, James B.; Wahle, Andreas

    2010-03-01

    Quantitative analysis of the left ventricular shape and motion patterns associated with left ventricular mechanical dyssynchrony (LVMD) is essential for diagnosis and treatment planning in congestive heart failure. Real-time 3D echocardiography (RT3DE) used for LVMD analysis is frequently limited by heavy speckle noise or partially incomplete data, thus a segmentation method utilizing learned global shape knowledge is beneficial. In this study, the endocardial surface of the left ventricle (LV) is segmented using a hybrid approach combining active shape model (ASM) with optimal graph search. The latter is used to achieve landmark refinement in the ASM framework. Optimal graph search translates the 3D segmentation into the detection of a minimum-cost closed set in a graph and can produce a globally optimal result. Various information-gradient, intensity distributions, and regional-property terms-are used to define the costs for the graph search. The developed method was tested on 44 RT3DE datasets acquired from 26 LVMD patients. The segmentation accuracy was assessed by surface positioning error and volume overlap measured for the whole LV as well as 16 standard LV regions. The segmentation produced very good results that were not achievable using ASM or graph search alone.

  14. How linguistic and cultural forces shape conceptions of time: English and Mandarin time in 3D.

    PubMed

    Fuhrman, Orly; McCormick, Kelly; Chen, Eva; Jiang, Heidi; Shu, Dingfang; Mao, Shuaimei; Boroditsky, Lera

    2011-01-01

    In this paper we examine how English and Mandarin speakers think about time, and we test how the patterns of thinking in the two groups relate to patterns in linguistic and cultural experience. In Mandarin, vertical spatial metaphors are used more frequently to talk about time than they are in English; English relies primarily on horizontal terms. We present results from two tasks comparing English and Mandarin speakers' temporal reasoning. The tasks measure how people spatialize time in three-dimensional space, including the sagittal (front/back), transverse (left/right), and vertical (up/down) axes. Results of Experiment 1 show that people automatically create spatial representations in the course of temporal reasoning, and these implicit spatializations differ in accordance with patterns in language, even in a non-linguistic task. Both groups showed evidence of a left-to-right representation of time, in accordance with writing direction, but only Mandarin speakers showed a vertical top-to-bottom pattern for time (congruent with vertical spatiotemporal metaphors in Mandarin). Results of Experiment 2 confirm and extend these findings, showing that bilinguals' representations of time depend on both long-term and proximal aspects of language experience. Participants who were more proficient in Mandarin were more likely to arrange time vertically (an effect of previous language experience). Further, bilinguals were more likely to arrange time vertically when they were tested in Mandarin than when they were tested in English (an effect of immediate linguistic context).

  15. Analysis of Uncertainty in a Middle-Cost Device for 3D Measurements in BIM Perspective

    PubMed Central

    Sánchez, Alonso; Naranjo, José-Manuel; Jiménez, Antonio; González, Alfonso

    2016-01-01

    Medium-cost devices equipped with sensors are being developed to get 3D measurements. Some allow for generating geometric models and point clouds. Nevertheless, the accuracy of these measurements should be evaluated, taking into account the requirements of the Building Information Model (BIM). This paper analyzes the uncertainty in outdoor/indoor three-dimensional coordinate measures and point clouds (using Spherical Accuracy Standard (SAS) methods) for Eyes Map, a medium-cost tablet manufactured by e-Capture Research & Development Company, Mérida, Spain. To achieve it, in outdoor tests, by means of this device, the coordinates of targets were measured from 1 to 6 m and cloud points were obtained. Subsequently, these were compared to the coordinates of the same targets measured by a Total Station. The Euclidean average distance error was 0.005–0.027 m for measurements by Photogrammetry and 0.013–0.021 m for the point clouds. All of them satisfy the tolerance for point cloud acquisition (0.051 m) according to the BIM Guide for 3D Imaging (General Services Administration); similar results are obtained in the indoor tests, with values of 0.022 m. In this paper, we establish the optimal distances for the observations in both, Photogrammetry and 3D Photomodeling modes (outdoor) and point out some working conditions to avoid in indoor environments. Finally, the authors discuss some recommendations for improving the performance and working methods of the device. PMID:27669245

  16. Analysis of Uncertainty in a Middle-Cost Device for 3D Measurements in BIM Perspective.

    PubMed

    Sánchez, Alonso; Naranjo, José-Manuel; Jiménez, Antonio; González, Alfonso

    2016-09-22

    Medium-cost devices equipped with sensors are being developed to get 3D measurements. Some allow for generating geometric models and point clouds. Nevertheless, the accuracy of these measurements should be evaluated, taking into account the requirements of the Building Information Model (BIM). This paper analyzes the uncertainty in outdoor/indoor three-dimensional coordinate measures and point clouds (using Spherical Accuracy Standard (SAS) methods) for Eyes Map, a medium-cost tablet manufactured by e-Capture Research & Development Company, Mérida, Spain. To achieve it, in outdoor tests, by means of this device, the coordinates of targets were measured from 1 to 6 m and cloud points were obtained. Subsequently, these were compared to the coordinates of the same targets measured by a Total Station. The Euclidean average distance error was 0.005-0.027 m for measurements by Photogrammetry and 0.013-0.021 m for the point clouds. All of them satisfy the tolerance for point cloud acquisition (0.051 m) according to the BIM Guide for 3D Imaging (General Services Administration); similar results are obtained in the indoor tests, with values of 0.022 m. In this paper, we establish the optimal distances for the observations in both, Photogrammetry and 3D Photomodeling modes (outdoor) and point out some working conditions to avoid in indoor environments. Finally, the authors discuss some recommendations for improving the performance and working methods of the device.

  17. Assessment of Eye Fatigue Caused by 3D Displays Based on Multimodal Measurements

    PubMed Central

    Bang, Jae Won; Heo, Hwan; Choi, Jong-Suk; Park, Kang Ryoung

    2014-01-01

    With the development of 3D displays, user's eye fatigue has been an important issue when viewing these displays. There have been previous studies conducted on eye fatigue related to 3D display use, however, most of these have employed a limited number of modalities for measurements, such as electroencephalograms (EEGs), biomedical signals, and eye responses. In this paper, we propose a new assessment of eye fatigue related to 3D display use based on multimodal measurements. compared to previous works Our research is novel in the following four ways: first, to enhance the accuracy of assessment of eye fatigue, we measure EEG signals, eye blinking rate (BR), facial temperature (FT), and a subjective evaluation (SE) score before and after a user watches a 3D display; second, in order to accurately measure BR in a manner that is convenient for the user, we implement a remote gaze-tracking system using a high speed (mega-pixel) camera that measures eye blinks of both eyes; thirdly, changes in the FT are measured using a remote thermal camera, which can enhance the measurement of eye fatigue, and fourth, we perform various statistical analyses to evaluate the correlation between the EEG signal, eye BR, FT, and the SE score based on the T-test, correlation matrix, and effect size. Results show that the correlation of the SE with other data (FT, BR, and EEG) is the highest, while those of the FT, BR, and EEG with other data are second, third, and fourth highest, respectively. PMID:25192315

  18. Reference Frames and 3-D Shape Perception of Pictured Objects: On Verticality and Viewpoint-From-Above

    PubMed Central

    van Doorn, Andrea J.; Wagemans, Johan

    2016-01-01

    Research on the influence of reference frames has generally focused on visual phenomena such as the oblique effect, the subjective visual vertical, the perceptual upright, and ambiguous figures. Another line of research concerns mental rotation studies in which participants had to discriminate between familiar or previously seen 2-D figures or pictures of 3-D objects and their rotated versions. In the present study, we disentangled the influence of the environmental and the viewer-centered reference frame, as classically done, by comparing the performances obtained in various picture and participant orientations. However, this time, the performance is the pictorial relief: the probed 3-D shape percept of the depicted object reconstructed from the local attitude settings of the participant. Comparisons between the pictorial reliefs based on different picture and participant orientations led to two major findings. First, in general, the pictorial reliefs were highly similar if the orientation of the depicted object was vertical with regard to the environmental or the viewer-centered reference frame. Second, a viewpoint-from-above interpretation could almost completely account for the shears occurring between the pictorial reliefs. More specifically, the shears could largely be considered as combinations of slants generated from the viewpoint-from-above, which was determined by the environmental as well as by the viewer-centered reference frame. PMID:27433329

  19. Shape and motion reconstruction from 3D-to-1D orthographically projected data via object-image relations.

    PubMed

    Ferrara, Matthew; Arnold, Gregory; Stuff, Mark

    2009-10-01

    This paper describes an invariant-based shape- and motion reconstruction algorithm for 3D-to-1D orthographically projected range data taken from unknown viewpoints. The algorithm exploits the object-image relation that arises in echo-based range data and represents a simplification and unification of previous work in the literature. Unlike one proposed approach, this method does not require uniqueness constraints, which makes its algorithmic form independent of the translation removal process (centroid removal, range alignment, etc.). The new algorithm, which simultaneously incorporates every projection and does not use an initialization in the optimization process, requires fewer calculations and is more straightforward than the previous approach. Additionally, the new algorithm is shown to be the natural extension of the approach developed by Tomasi and Kanade for 3D-to-2D orthographically projected data and is applied to a realistic inverse synthetic aperture radar imaging scenario, as well as experiments with varying amounts of aperture diversity and noise.

  20. Effect of 3-D instrument casing shape on the self-shading of in-water upwelling irradiance.

    PubMed

    Piskozub, Jacek

    2004-07-12

    The self-shading measurement error of the upwelling irradiance caused by the presence of a typical cylindrical housing of an optical instrument was calculated with the 3-D Monte-Carlo code as a function of the housing dimensions and of the optical parameters of seawater. The resulting values were compared to the self-shading error for a flat disk of the same diameter, originally used to establish self-shading error estimations universally used in marine optics. The results show that the self-shading of upwelling irradiance is underestimated by up to 25% producing a significant underestimation of the measured upwelling irradiance, and therefore reflectance, especially in turbid waters.

  1. Effect of 3-D instrument casing shape on the self-shading of in-water upwelling irradiance

    NASA Astrophysics Data System (ADS)

    Piskozub, Jacek

    2004-07-01

    The self-shading measurement error of the upwelling irradiance caused by the presence of a typical cylindrical housing of an optical instrument was calculated with the 3-D Monte-Carlo code as a function of the housing dimensions and of the optical parameters of seawater. The resulting values were compared to the self-shading error for a flat disk of the same diameter, originally used to establish self-shading error estimations universally used in marine optics. The results show that the self-shading of upwelling irradiance is underestimated by up to 25% producing a significant underestimation of the measured upwelling irradiance, and therefore reflectance, especially in turbid waters.

  2. The effect of motion on IMRT - looking at interplay with 3D measurements

    NASA Astrophysics Data System (ADS)

    Thomas, A.; Yan, H.; Oldham, M.; Juang, T.; Adamovics, J.; Yin, F. F.

    2013-06-01

    Clinical recommendations to address tumor motion management have been derived from studies dealing with simulations and 2D measurements. 3D measurements may provide more insight and possibly alter the current motion management guidelines. This study provides an initial look at true 3D measurements involving leaf motion deliveries by use of a motion phantom and the PRESAGE/DLOS dosimetry system. An IMRT and VMAT plan were delivered to the phantom and analyzed by means of DVHs to determine whether the expansion of treatment volumes based on known imaging motion adequately cover the target. DVHs confirmed that for these deliveries the expansion volumes were adequate to treat the intended target although further studies should be conducted to allow for differences in parameters that could alter the results, such as delivery dose and breathe rate.

  3. Flexible Fabrication of Shape-Controlled Collagen Building Blocks for Self-Assembly of 3D Microtissues.

    PubMed

    Zhang, Xu; Meng, Zhaoxu; Ma, Jingyun; Shi, Yang; Xu, Hui; Lykkemark, Simon; Qin, Jianhua

    2015-08-12

    Creating artificial tissue-like structures that possess the functionality, specificity, and architecture of native tissues remains a big challenge. A new and straightforward strategy for generating shape-controlled collagen building blocks with a well-defined architecture is presented, which can be used for self-assembly of complex 3D microtissues. Collagen blocks with tunable geometries are controllably produced and released via a membrane-templated microdevice. The formation of functional microtissues by embedding tissue-specific cells into collagen blocks with expression of specific proteins is described. The spontaneous self-assembly of cell-laden collagen blocks into organized tissue constructs with predetermined configurations is demonstrated, which are largely driven by the synergistic effects of cell-cell and cell-matrix interactions. This new strategy would open up new avenues for the study of tissue/organ morphogenesis, and tissue engineering applications.

  4. Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components.

    PubMed

    Gerling, Thomas; Wagenbauer, Klaus F; Neuner, Andrea M; Dietz, Hendrik

    2015-03-27

    We demonstrate that discrete three-dimensional (3D) DNA components can specifically self-assemble in solution on the basis of shape-complementarity and without base pairing. Using this principle, we produced homo- and heteromultimeric objects, including micrometer-scale one- and two-stranded filaments and lattices, as well as reconfigurable devices, including an actuator, a switchable gear, an unfoldable nanobook, and a nanorobot. These multidomain assemblies were stabilized via short-ranged nucleobase stacking bonds that compete against electrostatic repulsion between the components' interfaces. Using imaging by electron microscopy, ensemble and single-molecule fluorescence resonance energy transfer spectroscopy, and electrophoretic mobility analysis, we show that the balance between attractive and repulsive interactions, and thus the conformation of the assemblies, may be finely controlled by global parameters such as cation concentration or temperature and by an allosteric mechanism based on strand-displacement reactions.

  5. Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components

    NASA Astrophysics Data System (ADS)

    Gerling, Thomas; Wagenbauer, Klaus F.; Neuner, Andrea M.; Dietz, Hendrik

    2015-03-01

    We demonstrate that discrete three-dimensional (3D) DNA components can specifically self-assemble in solution on the basis of shape-complementarity and without base pairing. Using this principle, we produced homo- and heteromultimeric objects, including micrometer-scale one- and two-stranded filaments and lattices, as well as reconfigurable devices, including an actuator, a switchable gear, an unfoldable nanobook, and a nanorobot. These multidomain assemblies were stabilized via short-ranged nucleobase stacking bonds that compete against electrostatic repulsion between the components’ interfaces. Using imaging by electron microscopy, ensemble and single-molecule fluorescence resonance energy transfer spectroscopy, and electrophoretic mobility analysis, we show that the balance between attractive and repulsive interactions, and thus the conformation of the assemblies, may be finely controlled by global parameters such as cation concentration or temperature and by an allosteric mechanism based on strand-displacement reactions.

  6. Development of energy efficient mixing strategies in egg-shaped anaerobic reactors through 3D CFD simulation.

    PubMed

    Hernandez-Aguilar, Eduardo; Alvarado-Lassman, Alejandro; Osorio-Mirón, Anselmo; Méndez-Contreras, Juan M

    2016-01-01

    This work describes a 3D computational fluid dynamic model, which characterizes the hydrodynamic behavior of a mixing strategy applied to egg-shaped reactors that lack a mechanical stirring device. The model is based on Navier-Stokes and material balance equations without a chemical reaction. To describe the behavior of mixing, initial water feed flows of 6, 7.5 and 9 mL s(-1) were used. An experimental validation was subsequently carried out using a pulse technique, with NaCl as a tracer. The residence time distributions were quantitatively determined. Then, the degradation process of the wastewater sludge was characterized by studying the time dependence of the dynamic viscosity, the concentration of volatile solids and the density of wastewater sludge. The data resulting were introduced into the validated model, and five feed flows from 9 to 13 mL s(-1), the best performance found was with feed flow of 11 mL s(-1).

  7. Fabrication of 10 nm-scale complex 3D nanopatterns with multiple shapes and components by secondary sputtering phenomenon.

    PubMed

    Jeon, Hwan-Jin; Jeong, Hyeon Su; Kim, Yun Ho; Jung, Woo-Bin; Kim, Jeong Yeon; Jung, Hee-Tae

    2014-02-25

    We introduce an advanced ultrahigh-resolution (∼ 15 nm) patterning technique that enables the fabrication of various 3D high aspect ratio multicomponents/shaped nanostructures. This methodology utilizes the repetitive secondary sputtering phenomenon under etching plasma conditions and prepatterned fabrication control. The secondary sputtering phenomenon repetitively generates an angular distribution of target particles during ion-bombardment. This method, advanced repetitive secondary sputtering lithography, provides many strategies to fabricate complex continuous patterns and multilayer/material patterns with 10 nm-scale resolution. To demonstrate the versatility of this method, we show induced vertical alignment of liquid crystals (LCs) on indium-tin-oxide (ITO) grid patterns without any alignment layers. The ITO grid pattern fabricated in this method is found to have not only an alignment capability but also electrode properties without electrical or optical damage.

  8. 3D X-rays application for precision measurement of the cell structure of extruded polystyrene

    NASA Astrophysics Data System (ADS)

    Lim, J. Y.; Kim, K. Y.; Shin, H. S.; Yeom, S.; Lee, S. E.

    2015-12-01

    While the thermal performance of existing insulation materials have been determined by blister gases, the thermal performance of future insulation materials will be dependent on the cell size and independent foam content as we use eco-friendly blister gases with a higher thermal conductivity. However, with the current technology we are only able to guess the whole cell size and independent foam content through SEM applied 2D fragmentary scanning but are still far from the level of accurate cell structure data extraction. Under this situation, we utilized X-ray CT scanned 3D images to identify and shape the cell structure and proposed a method of inferring the whole distribution and independent foam content as accurately as possible. According to X-ray CT scanning images and SEM images, the shape was similar but according to tracer applied CT scanning images, the cell size distribution was 380∼400 pm within the range of the general insulation diameter distribution which had the highest reliability. As for extrusion foaming polystyrene, we need additional image processing to identify the independent foam content as its density is too low. So, it is recommended to raise the 3D cell structure completeness of XPS by improving the scanning accuracy.

  9. Automated 3D quantitative assessment and measurement of alpha angles from the femoral head-neck junction using MR imaging

    NASA Astrophysics Data System (ADS)

    Xia, Ying; Fripp, Jurgen; Chandra, Shekhar S.; Walker, Duncan; Crozier, Stuart; Engstrom, Craig

    2015-10-01

    To develop an automated approach for 3D quantitative assessment and measurement of alpha angles from the femoral head-neck (FHN) junction using bone models derived from magnetic resonance (MR) images of the hip joint. Bilateral MR images of the hip joints were acquired from 30 male volunteers (healthy active individuals and high-performance athletes, aged 18-49 years) using a water-excited 3D dual echo steady state (DESS) sequence. In a subset of these subjects (18 water-polo players), additional True Fast Imaging with Steady-state Precession (TrueFISP) images were acquired from the right hip joint. For both MR image sets, an active shape model based algorithm was used to generate automated 3D bone reconstructions of the proximal femur. Subsequently, a local coordinate system of the femur was constructed to compute a 2D shape map to project femoral head sphericity for calculation of alpha angles around the FHN junction. To evaluate automated alpha angle measures, manual analyses were performed on anterosuperior and anterior radial MR slices from the FHN junction that were automatically reformatted using the constructed coordinate system. High intra- and inter-rater reliability (intra-class correlation coefficients  >  0.95) was found for manual alpha angle measurements from the auto-extracted anterosuperior and anterior radial slices. Strong correlations were observed between manual and automatic measures of alpha angles for anterosuperior (r  =  0.84) and anterior (r  =  0.92) FHN positions. For matched DESS and TrueFISP images, there were no significant differences between automated alpha angle measures obtained from the upper anterior quadrant of the FHN junction (two-way repeated measures ANOVA, F  <  0.01, p  =  0.98). Our automatic 3D method analysed MR images of the hip joints to generate alpha angle measures around the FHN junction circumference with very good reliability and reproducibility. This work has the

  10. Numerical study of the 3D-shape of a drop immersed in a fluid under an elongational flow with vorticity

    NASA Astrophysics Data System (ADS)

    Sanjuan, A. S.; Reyes, M. A. H.; Minzoni, A. A.; Geffroy, E.

    2017-01-01

    This work focuses on a three-dimensional analysis of the deformation of a drop — immersed in a Newtonian fluid— generated by a 2D elongational flow with vorticity. The study of steady-state deformations of the cross-section of the drop shows a prevalent non-circular shape. The axisymmetric idealization of the ellipsoid is not observed nor the linear dependency between capillary number and deformation of the drop, as Taylor and Cox theory predicted. Our numerical results are consistent with experiments and other numerical simulations. However, in the latter cases, measurements of the cross section of the drop are few while a limited class of flows is applied. In this work, deformations induced by general two-dimensional flows upon the 3D drop shape are presented with special emphasis about the length scale along the third axis —perpendicular to the plane of the applied flow field.

  11. Standardization based on human factors for 3D display: performance characteristics and measurement methods

    NASA Astrophysics Data System (ADS)

    Uehara, Shin-ichi; Ujike, Hiroyasu; Hamagishi, Goro; Taira, Kazuki; Koike, Takafumi; Kato, Chiaki; Nomura, Toshio; Horikoshi, Tsutomu; Mashitani, Ken; Yuuki, Akimasa; Izumi, Kuniaki; Hisatake, Yuzo; Watanabe, Naoko; Umezu, Naoaki; Nakano, Yoshihiko

    2010-02-01

    We are engaged in international standardization activities for 3D displays. We consider that for a sound development of 3D displays' market, the standards should be based on not only mechanism of 3D displays, but also human factors for stereopsis. However, we think that there is no common understanding on what the 3D display should be and that the situation makes developing the standards difficult. In this paper, to understand the mechanism and human factors, we focus on a double image, which occurs in some conditions on an autostereoscopic display. Although the double image is generally considered as an unwanted effect, we consider that whether the double image is unwanted or not depends on the situation and that there are some allowable double images. We tried to classify the double images into the unwanted and the allowable in terms of the display mechanism and visual ergonomics for stereopsis. The issues associated with the double image are closely related to performance characteristics for the autostereoscopic display. We also propose performance characteristics, measurement and analysis methods to represent interocular crosstalk and motion parallax.

  12. Automated 3D trajectory measuring of large numbers of moving particles.

    PubMed

    Wu, Hai Shan; Zhao, Qi; Zou, Danping; Chen, Yan Qiu

    2011-04-11

    Complex dynamics of natural particle systems, such as insect swarms, bird flocks, fish schools, has attracted great attention of scientists for years. Measuring 3D trajectory of each individual in a group is vital for quantitative study of their dynamic properties, yet such empirical data is rare mainly due to the challenges of maintaining the identities of large numbers of individuals with similar visual features and frequent occlusions. We here present an automatic and efficient algorithm to track 3D motion trajectories of large numbers of moving particles using two video cameras. Our method solves this problem by formulating it as three linear assignment problems (LAP). For each video sequence, the first LAP obtains 2D tracks of moving targets and is able to maintain target identities in the presence of occlusions; the second one matches the visually similar targets across two views via a novel technique named maximum epipolar co-motion length (MECL), which is not only able to effectively reduce matching ambiguity but also further diminish the influence of frequent occlusions; the last one links 3D track segments into complete trajectories via computing a globally optimal assignment based on temporal and kinematic cues. Experiment results on simulated particle swarms with various particle densities validated the accuracy and robustness of the proposed method. As real-world case, our method successfully acquired 3D flight paths of fruit fly (Drosophila melanogaster) group comprising hundreds of freely flying individuals.

  13. Analysis of a 3-D system function measured for magnetic particle imaging.

    PubMed

    Rahmer, Jürgen; Weizenecker, Jürgen; Gleich, Bernhard; Borgert, Jörn

    2012-06-01

    Magnetic particle imaging (MPI) is a new tomographic imaging approach that can quantitatively map magnetic nanoparticle distributions in vivo. It is capable of volumetric real-time imaging at particle concentrations low enough to enable clinical applications. For image reconstruction in 3-D MPI, a system function (SF) is used, which describes the relation between the acquired MPI signal and the spatial origin of the signal. The SF depends on the instrumental configuration, the applied field sequence, and the magnetic particle characteristics. Its properties reflect the quality of the spatial encoding process. This work presents a detailed analysis of a measured SF to give experimental evidence that 3-D MPI encodes information using a set of 3-D spatial patterns or basis functions that is stored in the SF. This resembles filling 3-D k-space in magnetic resonance imaging, but is faster since all information is gathered simultaneously over a broad acquisition bandwidth. A frequency domain analysis shows that the finest structures that can be encoded with the presented SF are as small as 0.6 mm. SF simulations are performed to demonstrate that larger particle cores extend the set of basis functions towards higher resolution and that the experimentally observed spatial patterns require the existence of particles with core sizes of about 30 nm in the calibration sample. A simple formula is presented that qualitatively describes the basis functions to be expected at a certain frequency.

  14. 3D Laboratory Measurements of Forces, Flows, and Collimation in Arched Flux Tubes

    NASA Astrophysics Data System (ADS)

    Haw, Magnus; Bellan, Paul

    2016-10-01

    Fully 3D, vector MHD force measurements from an arched, current carrying flux tube (flux rope) are presented. The experiment consists of two arched plasma-filled flux ropes each powered by a capacitor bank. The two loops are partially overlapped, as in a Venn diagram, and collide and reconnect during their evolution. B-field data is taken on the lower plasma arch using a 54 channel B-dot probe. 3D volumetric data is acquired by placing the probe at 2700 locations and taking 5 plasma shots at each location. The resulting data set gives high resolution (2cm, 10ns) volumetric B-field data with high reproducibility (deviation of 3% between shots). Taking the curl of the measured 3D B-field gives current densities (J) in good agreement with measured capacitor bank current. The JxB forces calculated from the data have a strong axial component at the base of the current channel and are shown to scale linearly with axial gradients in current density. Assuming force balance in the flux tube minor radius direction, we infer near-Alfvenic axial flows from the footpoint regions which are consistent with the measured axial forces. Flux tube collimation is observed in conjunction with these axial flows. These dynamic processes are relevant to the stability and dynamics of coronal loops. Supported provided by NSF, AFOSR.

  15. 3D Plenoptic PIV Measurements of a Shock Wave Boundary Layer Interaction

    NASA Astrophysics Data System (ADS)

    Thurow, Brian; Bolton, Johnathan; Arora, Nishul; Alvi, Farrukh

    2016-11-01

    Plenoptic particle image velocimetry (PIV) is a relatively new technique that uses the computational refocusing capability of a single plenoptic camera and volume illumination with a double-pulsed light source to measure the instantaneous 3D/3C velocity field of a flow field seeded with particles. In this work, plenoptic PIV is used to perform volumetric velocity field measurements of a shock-wave turbulent boundary layer interaction (SBLI). Experiments were performed in a Mach 2.0 flow with the SBLI produced by an unswept fin at 15°angle of attack. The measurement volume was 38 x 25 x 32 mm3 and illuminated with a 400 mJ/pulse Nd:YAG laser with 1.7 microsecond inter-pulse time. Conventional planar PIV measurements along two planes within the volume are used for comparison. 3D visualizations of the fin generated shock and subsequent SBLI are presented. The growth of the shock foot and separation region with increasing distance from the fin tip is observed and agrees with observations made using planar PIV. Instantaneous images depict 3D fluctuations in the position of the shock foot from one image to the next. The authors acknowledge the support of the Air Force Office of Scientific Research.

  16. 3D real-time measurement system of seam with laser

    NASA Astrophysics Data System (ADS)

    Huang, Min-shuang; Huang, Jun-fen

    2014-02-01

    3-D Real-time Measurement System of seam outline based on Moiré Projection is proposed and designed. The system is composed of LD, grating, CCD, video A/D, FPGA, DSP and an output interface. The principle and hardware makeup of high-speed and real-time image processing circuit based on a Digital Signal Processor (DSP) and a Field Programmable Gate Array (FPGA) are introduced. Noise generation mechanism in poor welding field conditions is analyzed when Moiré stripes are projected on a welding workpiece surface. Median filter is adopted to smooth the acquired original laser image of seam, and then measurement results of a 3-D outline image of weld groove are provided.

  17. Measurement error analysis of the 3D four-wheel aligner

    NASA Astrophysics Data System (ADS)

    Zhao, Qiancheng; Yang, Tianlong; Huang, Dongzhao; Ding, Xun

    2013-10-01

    Positioning parameters of four-wheel have significant effects on maneuverabilities, securities and energy saving abilities of automobiles. Aiming at this issue, the error factors of 3D four-wheel aligner, which exist in extracting image feature points, calibrating internal and exeternal parameters of cameras, calculating positional parameters and measuring target pose, are analyzed respectively based on the elaborations of structure and measurement principle of 3D four-wheel aligner, as well as toe-in and camber of four-wheel, kingpin inclination and caster, and other major positional parameters. After that, some technical solutions are proposed for reducing the above error factors, and on this basis, a new type of aligner is developed and marketed, it's highly estimated among customers because the technical indicators meet requirements well.

  18. An Approach to 3d Digital Modeling of Surfaces with Poor Texture by Range Imaging Techniques. `SHAPE from Stereo' VS. `SHAPE from Silhouette' in Digitizing Jorge Oteiza's Sculptures

    NASA Astrophysics Data System (ADS)

    García Fernández, J.; Álvaro Tordesillas, A.; Barba, S.

    2015-02-01

    Despite eminent development of digital range imaging techniques, difficulties persist in the virtualization of objects with poor radiometric information, in other words, objects consisting of homogeneous colours (totally white, black, etc.), repetitive patterns, translucence, or materials with specular reflection. This is the case for much of the Jorge Oteiza's works, particularly in the sculpture collection of the Museo Fundación Jorge Oteiza (Navarra, Spain). The present study intend to analyse and asses the performance of two digital 3D-modeling methods based on imaging techniques, facing cultural heritage in singular cases, determined by radiometric characteristics as mentioned: Shape from Silhouette and Shape from Stereo. On the other hand, the text proposes the definition of a documentation workflow and presents the results of its application in the collection of sculptures created by Oteiza.

  19. Wound Measurement Techniques: Comparing the Use of Ruler Method, 2D Imaging and 3D Scanner.

    PubMed

    Shah, Aj; Wollak, C; Shah, J B

    2013-12-01

    The statistics on the growing number of non-healing wounds is alarming. In the United States, chronic wounds affect 6.5 million patients. An estimated US $25 billion is spent annually on treatment of chronic wounds and the burden is rapidly growing due to increasing health care costs, an aging population and a sharp rise in the incidence of diabetes and obesity worldwide.(1) Accurate wound measurement techniques will help health care personnel to monitor the wounds which will indirectly help improving care.(7,9) The clinical practice of measuring wounds has not improved even today.(2,3) A common method like the ruler method to measure wounds has poor interrater and intrarater reliability.(2,3) Measuring the greatest length by the greatest width perpendicular to the greatest length, the perpendicular method, is more valid and reliable than other ruler based methods.(2) Another common method like acetate tracing is more accurate than the ruler method but still has its disadvantages. These common measurement techniques are time consuming with variable inaccuracies. In this study, volumetric measurements taken with a non-contact 3-D scanner are benchmarked against the common ruler method, acetate grid tracing, and 2-D image planimetry volumetric measurement technique. A liquid volumetric fill method is used as the control volume. Results support the hypothesis that the 3-D scanner consistently shows accurate volumetric measurements in comparison to standard volumetric measurements obtained by the waterfill technique (average difference of 11%). The 3-D scanner measurement technique was found more reliable and valid compared to other three techniques, the ruler method (average difference of 75%), acetate grid tracing (average difference of 41%), and 2D planimetric measurements (average difference of 52%). Acetate tracing showed more accurate measurements compared to the ruler method (average difference of 41% (acetate tracing) compared to 75% (ruler method)). Improving

  20. Wound Measurement Techniques: Comparing the Use of Ruler Method, 2D Imaging and 3D Scanner

    PubMed Central

    Shah, Aj; Wollak, C.; Shah, J.B.

    2015-01-01

    The statistics on the growing number of non-healing wounds is alarming. In the United States, chronic wounds affect 6.5 million patients. An estimated US $25 billion is spent annually on treatment of chronic wounds and the burden is rapidly growing due to increasing health care costs, an aging population and a sharp rise in the incidence of diabetes and obesity worldwide.1 Accurate wound measurement techniques will help health care personnel to monitor the wounds which will indirectly help improving care.7,9 The clinical practice of measuring wounds has not improved even today.2,3 A common method like the ruler method to measure wounds has poor interrater and intrarater reliability.2,3 Measuring the greatest length by the greatest width perpendicular to the greatest length, the perpendicular method, is more valid and reliable than other ruler based methods.2 Another common method like acetate tracing is more accurate than the ruler method but still has its disadvantages. These common measurement techniques are time consuming with variable inaccuracies. In this study, volumetric measurements taken with a non-contact 3-D scanner are benchmarked against the common ruler method, acetate grid tracing, and 2-D image planimetry volumetric measurement technique. A liquid volumetric fill method is used as the control volume. Results support the hypothesis that the 3-D scanner consistently shows accurate volumetric measurements in comparison to standard volumetric measurements obtained by the waterfill technique (average difference of 11%). The 3-D scanner measurement technique was found more reliable and valid compared to other three techniques, the ruler method (average difference of 75%), acetate grid tracing (average difference of 41%), and 2D planimetric measurements (average difference of 52%). Acetate tracing showed more accurate measurements compared to the ruler method (average difference of 41% (acetate tracing) compared to 75% (ruler method)). Improving the

  1. Unequal-period combination approach of gray code and phase-shifting for 3-D visual measurement

    NASA Astrophysics Data System (ADS)

    Yu, Shuang; Zhang, Jing; Yu, Xiaoyang; Sun, Xiaoming; Wu, Haibin

    2016-09-01

    Combination of Gray code and phase-shifting is the most practical and advanced approach for the structured light 3-D measurement so far, which is able to measure objects with complex and discontinuous surface. However, for the traditional combination of the Gray code and phase-shifting, the captured Gray code images are not always sharp cut-off in the black-white conversion boundaries, which may lead to wrong decoding analog code orders. Moreover, during the actual measurement, there also exists local decoding error for the wrapped analog code obtained with the phase-shifting approach. Therefore, for the traditional approach, the wrong analog code orders and the local decoding errors will consequently introduce the errors which are equivalent to a fringe period when the analog code is unwrapped. In order to avoid one-fringe period errors, we propose an approach which combines Gray code with phase-shifting according to unequal period. With theoretical analysis, we build the measurement model of the proposed approach, determine the applicable condition and optimize the Gray code encoding period and phase-shifting fringe period. The experimental results verify that the proposed approach can offer a reliable unwrapped analog code, which can be used in 3-D shape measurement.

  2. Characteristics measurement methodology of the large-size autostereoscopic 3D LED display

    NASA Astrophysics Data System (ADS)

    An, Pengli; Su, Ping; Zhang, Changjie; Cao, Cong; Ma, Jianshe; Cao, Liangcai; Jin, Guofan

    2014-11-01

    Large-size autostereoscopic 3D LED displays are commonly used in outdoor or large indoor space, and have the properties of long viewing distance and relatively low light intensity at the viewing distance. The instruments used to measure the characteristics (crosstalk, inconsistency, chromatic dispersion, etc.) of the displays should have long working distance and high sensitivity. In this paper, we propose a methodology for characteristics measurement based on a distribution photometer with a working distance of 5.76m and the illumination sensitivity of 0.001 mlx. A display panel holder is fabricated and attached on the turning stage of the distribution photometer. Specific test images are loaded on the display separately, and the luminance data at the distance of 5.76m to the panel are measured. Then the data are transformed into the light intensity at the optimum viewing distance. According to definitions of the characteristics of the 3D displays, the crosstalk, inconsistency, chromatic dispersion could be calculated. The test results and analysis of the characteristics of an autostereoscopic 3D LED display are proposed.

  3. Comparison of measuring strategies for the 3-D electrical resistivity imaging of tumuli

    NASA Astrophysics Data System (ADS)

    Tsourlos, Panagiotis; Papadopoulos, Nikos; Yi, Myeong-Jong; Kim, Jung-Ho; Tsokas, Gregory

    2014-02-01

    Artificial erected hills like tumuli, mounds, barrows and kurgans comprise monuments of the past human activity and offer opportunities to reconstruct habitation models regarding the life and customs during their building period. These structures also host features of archeological significance like architectural relics, graves or chamber tombs. Tumulus exploration is a challenging geophysical problem due to the complex distribution of the subsurface physical properties, the size and burial depth of potential relics and the uneven topographical terrain. Geoelectrical methods by means of three-dimensional (3-D) inversion are increasingly popular for tumulus investigation. Typically data are obtained by establishing a regular rectangular grid and assembling the data collected by parallel two-dimensional (2-D) tomographies. In this work the application of radial 3-D mode is studied, which is considered as the assembly of data collected by radially positioned Electrical Resistivity Tomography (ERT) lines. The relative advantages and disadvantages of this measuring mode over the regular grid measurements were investigated and optimum ways to perform 3-D ERT surveys for tumuli investigations were proposed. Comparative test was performed by means of synthetic examples as well as by tests with field data. Overall all tested models verified the superiority of the radial mode in delineating bodies positioned at the central part of the tumulus while regular measuring mode proved superior in recovering bodies positioned away from the center of the tumulus. The combined use of radial and regular modes seems to produce superior results in the expense of time required for data acquisition and processing.

  4. Examination about Influence for Precision of 3d Image Measurement from the Ground Control Point Measurement and Surface Matching

    NASA Astrophysics Data System (ADS)

    Anai, T.; Kochi, N.; Yamada, M.; Sasaki, T.; Otani, H.; Sasaki, D.; Nishimura, S.; Kimoto, K.; Yasui, N.

    2015-05-01

    As the 3D image measurement software is now widely used with the recent development of computer-vision technology, the 3D measurement from the image is now has acquired the application field from desktop objects as wide as the topography survey in large geographical areas. Especially, the orientation, which used to be a complicated process in the heretofore image measurement, can be now performed automatically by simply taking many pictures around the object. And in the case of fully textured object, the 3D measurement of surface features is now done all automatically from the orientated images, and greatly facilitated the acquisition of the dense 3D point cloud from images with high precision. With all this development in the background, in the case of small and the middle size objects, we are now furnishing the all-around 3D measurement by a single digital camera sold on the market. And we have also developed the technology of the topographical measurement with the air-borne images taken by a small UAV [1~5]. In this present study, in the case of the small size objects, we examine the accuracy of surface measurement (Matching) by the data of the experiments. And as to the topographic measurement, we examine the influence of GCP distribution on the accuracy by the data of the experiments. Besides, we examined the difference of the analytical results in each of the 3D image measurement software. This document reviews the processing flow of orientation and the 3D measurement of each software and explains the feature of the each software. And as to the verification of the precision of stereo-matching, we measured the test plane and the test sphere of the known form and assessed the result. As to the topography measurement, we used the air-borne image data photographed at the test field in Yadorigi of Matsuda City, Kanagawa Prefecture JAPAN. We have constructed Ground Control Point which measured by RTK-GPS and Total Station. And we show the results of analysis made

  5. Microfabrics and 3D grain shape of Gorleben rock salt: Constraints on deformation mechanisms and paleodifferential stress

    NASA Astrophysics Data System (ADS)

    Thiemeyer, Nicolas; Zulauf, Gernold; Mertineit, Michael; Linckens, Jolien; Pusch, Maximilian; Hammer, Jörg

    2016-04-01

    The Permian Knäuel- and Streifensalz formations (z2HS1 and z2HS2) are main constituents of the Gorleben salt dome (Northern Germany) and show different amounts and distributions of anhydrite. The reconstruction of 3D halite grain shape ellipsoids reveals small grain size (3.4 ± 0.6 mm) and heterogeneous grain shapes in both formations, the latter attributed to the polyphase deformation of the rock salt during diapirism. The halite microfabrics of both formations indicate that strain-induced grain boundary migration was active during deformation. Crystal plastic deformation of halite is further documented by lattice bending, subgrain formation and minor subgrain rotation. Evidence for pressure solution of halite has not been found, but cannot be excluded because of the small grain size, the lack of LPO and the low differential stress (1.1-1.3 MPa) as deduced from subgrain-size piezometry. Anhydrite has been deformed in the brittle-ductile regime by solution precipitation creep, minor dislocation creep and brittle boudinage. No continuous anhydrite layers are preserved, and halite has acted as a sealing matrix embedding the disrupted anhydrite fragments prohibiting any potential migration pathways for fluids. Thus, anhydrite should not have a negative effect on the barrier properties of the Gorleben rock salts investigated in this study.

  6. TU-CD-207-09: Analysis of the 3-D Shape of Patients’ Breast for Breast Imaging and Surgery Planning

    SciTech Connect

    Agasthya, G; Sechopoulos, I

    2015-06-15

    Purpose: Develop a method to accurately capture the 3-D shape of patients’ external breast surface before and during breast compression for mammography/tomosynthesis. Methods: During this IRB-approved, HIPAA-compliant study, 50 women were recruited to undergo 3-D breast surface imaging during breast compression and imaging for the cranio-caudal (CC) view on a digital mammography/breast tomosynthesis system. Digital projectors and cameras mounted on tripods were used to acquire 3-D surface images of the breast, in three conditions: (a) positioned on the support paddle before compression, (b) during compression by the compression paddle and (c) the anterior-posterior view with the breast in its natural, unsupported position. The breast was compressed to standard full compression with the compression paddle and a tomosynthesis image was acquired simultaneously with the 3-D surface. The 3-D surface curvature and deformation with respect to the uncompressed surface was analyzed using contours. The 3-D surfaces were voxelized to capture breast shape in a format that can be manipulated for further analysis. Results: A protocol was developed to accurately capture the 3-D shape of patients’ breast before and during compression for mammography. Using a pair of 3-D scanners, the 50 patient breasts were scanned in three conditions, resulting in accurate representations of the breast surfaces. The surfaces were post processed, analyzed using contours and voxelized, with 1 mm{sup 3} voxels, converting the breast shape into a format that can be easily modified as required. Conclusion: Accurate characterization of the breast curvature and shape for the generation of 3-D models is possible. These models can be used for various applications such as improving breast dosimetry, accurate scatter estimation, conducting virtual clinical trials and validating compression algorithms. Ioannis Sechopoulos is consultant for Fuji Medical Systems USA.

  7. Production of 3D consistent image representation of outdoor scenery for multimedia ambiance communication from multiviewpoint range data measured with a 3D laser scanner

    NASA Astrophysics Data System (ADS)

    Saito, Takahiro; Imamura, Hiroshi; Sunaga, Shin-ichi; Komatsu, Takashi

    2002-03-01

    Toward future 3D image communication, we have started studying the Multimedia Ambiance Communication, a kind of shared-space communication, and adopted an approach to design the 3D-image space using actual images of outdoor scenery, by introducing the concept of the three-layer model of long-, mid- and short-range views. The long- and mid-range views do not require precise representation of their 3D structure, and hence we employ the setting representation like stage settings to approximate their 3D structure according to the slanting-plane-model. We deal with an approach to produce the consistent setting representation for describing long- and mid-range views from range and texture data measured with a laser scanner and a digital camera located at multiple viewpoints. The production of such a representation requires the development of several techniques: nonlinear smoothing of raw range data, plane segmentation of range data, registration of multi-viewpoint range data, integration of multi-viewpoint setting representations and texture mapping onto each setting plane. In this paper, we concentrate on the plane segmentation and the multi-viewpoint data registration. Our plane segmentation method is based on the concept of the region competition, and can precisely extract fitting planes from the range data. Our registration method uses the equations of the segmented planes corresponding between two different viewpoints to determine the 3D Euclidean transformation between them. A unifying consistent setting representation can be constructed by integrating multiple setting representations for multiple viewpoints.

  8. Analysis of 3d Magnetotelluric Measurements Over the Coso Geothermal Field

    NASA Astrophysics Data System (ADS)

    Newman, G. A.; Gasperikova, E.; Hoversten, M.

    2007-12-01

    We have carried out an investigation of the Coso Geothermal field utilizing a dense grid of magnetotelluric (MT) stations plus a single line of contiguous bipole array profiling over the east flank of the field. Motivation for this study is that electrical resistivity/conductivity mapping can contribute to better understanding of enhanced geothermal systems (EGS) by imaging the geometry, bounds and controlling structures in existing production, and by monitoring changes in the underground resistivity properties in the vicinity of injection due to fracture porosity enhancement. Initial analysis of the Coso MT data was carried out using 2D MT imaging technology to construct a starting 3D resistivity model from a series of 2D resistivity images obtained using the inline electric field measurements (Zxy impedance elements) along different measurement transects. This model was then refined through a 3D inversion process. The 3D resisitivity model clearly showed the controlling geological structures influencing well production at Coso and shows correlations with mapped surface features such as faults and regional geoelectric strike. We have also correlated the model with an acoustic and shear velocity model of the field to show that the near-vertical high conductivity (low resistivity) structure on the eastern flank of the producing field is also a zone of increase acoustic velocity and increased Vp/Vs ratio.

  9. Evolution in boron-based GEM detectors for diffraction measurements: from planar to 3D converters

    NASA Astrophysics Data System (ADS)

    Albani, Giorgia; Perelli Cippo, Enrico; Croci, Gabriele; Muraro, Andrea; Schooneveld, Erik; Scherillo, Antonella; Hall-Wilton, Richard; Kanaki, Kalliopi; Höglund, Carina; Hultman, Lars; Birch, Jens; Claps, Gerardo; Murtas, Fabrizio; Rebai, Marica; Tardocchi, Marco; Gorini, Giuseppe

    2016-11-01

    The so-called ‘3He-crisis’ has motivated the neutron detector community to undertake an intense R&D programme in order to develop technologies alternative to standard 3He tubes and suitable for neutron detection systems in future spallation sources such as the European spallation source (ESS). Boron-based GEM (gas electron multiplier) detectors are a promising ‘3He-free’ technology for thermal neutron detection in neutron scattering experiments. In this paper the evolution of boron-based GEM detectors from planar to 3D converters with an application in diffraction measurements is presented. The use of 3D converters coupled with GEMs allows for an optimization of the detector performances. Three different detectors were used for diffraction measurements on the INES instrument at the ISIS spallation source. The performances of the GEM-detectors are compared with those of conventional 3He tubes installed on the INES instrument. The conceptual detector with the 3D converter used in this paper reached a count rate per unit area of about 25% relative to the currently installed 3He tube. Its timing resolution is similar and the signal-to-background ratio (S/B) is 2 times lower.

  10. Accurately measuring volume of soil samples using low cost Kinect 3D scanner

    NASA Astrophysics Data System (ADS)

    van der Sterre, B.; Hut, R.; Van De Giesen, N.

    2012-12-01

    The 3D scanner of the Kinect game controller can be used to increase the accuracy and efficiency of determining in situ soil moisture content. Soil moisture is one of the principal hydrological variables in both the water and energy interactions between soil and atmosphere. Current in situ measurements of soil moisture either rely on indirect measurements (of electromagnetic constants or heat capacity) or on physically taking a sample and weighing it in a lab. The bottleneck in accurately retrieving soil moisture using samples is the determining of the volume of the sample. Currently this is mostly done by the very time consuming "sand cone method" in which the volume were the sample used to sit is filled with sand. We show that 3D scanner that is part of the $150 game controller extension "Kinect" can be used to make 3D scans before and after taking the sample. The accuracy of this method is tested by scanning forms of known volume. This method is less time consuming and less error-prone than using a sand cone.

  11. Accurately measuring volume of soil samples using low cost Kinect 3D scanner

    NASA Astrophysics Data System (ADS)

    van der Sterre, Boy-Santhos; Hut, Rolf; van de Giesen, Nick

    2013-04-01

    The 3D scanner of the Kinect game controller can be used to increase the accuracy and efficiency of determining in situ soil moisture content. Soil moisture is one of the principal hydrological variables in both the water and energy interactions between soil and atmosphere. Current in situ measurements of soil moisture either rely on indirect measurements (of electromagnetic constants or heat capacity) or on physically taking a sample and weighing it in a lab. The bottleneck in accurately retrieving soil moisture using samples is the determining of the volume of the sample. Currently this is mostly done by the very time consuming "sand cone method" in which the volume were the sample used to sit is filled with sand. We show that 3D scanner that is part of the 150 game controller extension "Kinect" can be used to make 3D scans before and after taking the sample. The accuracy of this method is tested by scanning forms of known volume. This method is less time consuming and less error-prone than using a sand cone.

  12. Stratified shear flow in an inclined duct: near-instantaneous 3D velocity and density measurements

    NASA Astrophysics Data System (ADS)

    Partridge, Jamie; Lefauve, Adrien; Dalziel, Stuart; Linden, Paul

    2016-11-01

    We present results from a new experimental setup to study the exchange flow in an inclined square duct between two reservoirs containing fluids of different densities. This system can exhibit stratified shear wave motions, and has a distinct parameter threshold above which turbulence is triggered and progressively fills a larger fraction of the duct. To probe these intrinsically 3D flows, we introduce a new setup in which a traversing laser sheet allows us to obtain near-instantaneous 3D velocity and density fields. Three components of velocity are measured on successive 2D planes using stereo particle image velocimetry (PIV) with density information obtained simultaneously using laser induced fluorescence (LIF). Supported by EPSRC Programme Grant EP/K034529/1 entitled "Mathematical Underpinnings of Stratified Turbulence".

  13. Measurement of anastomosis geometry in lower extremity bypass grafts with 3-D ultrasound imaging.

    PubMed

    Leotta, Daniel F; Primozich, Jean F; Lowe, Christopher M; Karr, Leni N; Bergelin, Robert O; Beach, Kirk W; Zierler, R Eugene

    2005-10-01

    The attachment sites of lower extremity bypass grafts are known to exhibit a wide range of geometries. Factors that determine the geometry of a given anastomosis include graft material, graft site, native vessel size, graft size and individual patient anatomy. Therefore, it is difficult to specify a standard anastomosis geometry before surgery and difficult to predict the effect of the geometry on long-term graft patency. We have used 3-D ultrasound imaging to study 46 proximal anastomoses of lower limb bypass grafts. We have developed methods to characterize the 3-D geometry of the anastomosis in terms of component sizes and angles. These detailed geometric measurements describe a range of anastomosis geometries and establish standardized parameters across cases that can be used to relate anastomosis geometry to outcome.

  14. Structured light 3D tracking system for measuring motions in PET brain imaging

    NASA Astrophysics Data System (ADS)

    Olesen, Oline V.; Jørgensen, Morten R.; Paulsen, Rasmus R.; Højgaard, Liselotte; Roed, Bjarne; Larsen, Rasmus

    2010-02-01

    Patient motion during scanning deteriorates image quality, especially for high resolution PET scanners. A new proposal for a 3D head tracking system for motion correction in high resolution PET brain imaging is set up and demonstrated. A prototype tracking system based on structured light with a DLP projector and a CCD camera is set up on a model of the High Resolution Research Tomograph (HRRT). Methods to reconstruct 3D point clouds of simple surfaces based on phase-shifting interferometry (PSI) are demonstrated. The projector and camera are calibrated using a simple stereo vision procedure where the projector is treated as a camera. Additionally, the surface reconstructions are corrected for the non-linear projector output prior to image capture. The results are convincing and a first step toward a fully automated tracking system for measuring head motions in PET imaging.

  15. 3D multifunctional integumentary membranes for spatiotemporal cardiac measurements and stimulation across the entire epicardium

    NASA Astrophysics Data System (ADS)

    Xu, Lizhi; Gutbrod, Sarah R.; Bonifas, Andrew P.; Su, Yewang; Sulkin, Matthew S.; Lu, Nanshu; Chung, Hyun-Joong; Jang, Kyung-In; Liu, Zhuangjian; Ying, Ming; Lu, Chi; Webb, R. Chad; Kim, Jong-Seon; Laughner, Jacob I.; Cheng, Huanyu; Liu, Yuhao; Ameen, Abid; Jeong, Jae-Woong; Kim, Gwang-Tae; Huang, Yonggang; Efimov, Igor R.; Rogers, John A.

    2014-02-01

    Means for high-density multiparametric physiological mapping and stimulation are critically important in both basic and clinical cardiology. Current conformal electronic systems are essentially 2D sheets, which cannot cover the full epicardial surface or maintain reliable contact for chronic use without sutures or adhesives. Here we create 3D elastic membranes shaped precisely to match the epicardium of the heart via the use of 3D printing, as a platform for deformable arrays of multifunctional sensors, electronic and optoelectronic components. Such integumentary devices completely envelop the heart, in a form-fitting manner, and possess inherent elasticity, providing a mechanically stable biotic/abiotic interface during normal cardiac cycles. Component examples range from actuators for electrical, thermal and optical stimulation, to sensors for pH, temperature and mechanical strain. The semiconductor materials include silicon, gallium arsenide and gallium nitride, co-integrated with metals, metal oxides and polymers, to provide these and other operational capabilities. Ex vivo physiological experiments demonstrate various functions and methodological possibilities for cardiac research and therapy.

  16. 3-D measurement of osmotic dehydration of isolated and adhered PC-3 cells.

    PubMed

    Yoshimori, Takashi; Takamatsu, Hiroshi

    2009-02-01

    Cell dehydration during freezing results from an elevated concentration of electrolytes in the extracellular medium that is deeply involved in cellular injury. We undertook real-time threedimensional (3-D) observation of osmotic dehydration of cells, motivated by a comparison of cellular responses between isolated cells in suspension and cultured cells adhering to a surface since several studies have suggested a difference in freeze tolerance between cell suspensions and monolayers. A laser confocal scanner was used with a perfusion microscope to capture sectional images of chloromethylbenzamido (DiI)-stained PC-3 cells that were exposed to an increase in NaCl concentration from 0.15 to 0.5M at 23 degrees C. Change in cell volume was determined from reconstructed 3-D images taken every 2.5s. When cells were exposed to an elevated NaCl concentration, isolated cells contracted and markedly distorted from their original spherical shape. In contrast, adhered cells showed only a reduction in height and kept their basal area constant. Apparent membrane hydraulic conductivity did not vary considerably between isolated and adhered cells, suggesting a negligible effect of the cytoskeletal structure on the rate of water transport. The surface area that contributed to water transport in adhered PC-3 cells was nearly equal to or slightly smaller than that present in isolated cells. Therefore, the similarity in properties and dimensions between isolated and adhered cells indicate that there will be similar extents of dehydration, resulting in a similar degree of supercooling during freezing.

  17. 3D multifunctional integumentary membranes for spatiotemporal cardiac measurements and stimulation across the entire epicardium

    PubMed Central

    Xu, Lizhi; Gutbrod, Sarah R.; Bonifas, Andrew P.; Su, Yewang; Sulkin, Matthew S.; Lu, Nanshu; Chung, Hyun-Joong; Jang, Kyung-In; Liu, Zhuangjian; Ying, Ming; Lu, Chi; Webb, R. Chad; Kim, Jong-Seon; Laughner, Jacob I.; Cheng, Huanyu; Liu, Yuhao; Ameen, Abid; Jeong, Jae-Woong; Kim, Gwang-Tae; Huang, Yonggang; Efimov, Igor R.; Rogers, John A.

    2015-01-01

    Means for high-density multiparametric physiological mapping and stimulation are critically important in both basic and clinical cardiology. Current conformal electronic systems are essentially 2D sheets, which cannot cover the full epicardial surface or maintain reliable contact for chronic use without sutures or adhesives. Here we create 3D elastic membranes shaped precisely to match the epicardium of the heart via the use of 3D printing, as a platform for deformable arrays of multifunctional sensors, electronic and optoelectronic components. Such integumentary devices completely envelop the heart, in a form-fitting manner, and possess inherent elasticity, providing a mechanically stable bioti-/abiotic interface during normal cardiac cycles. Component examples range from actuators for electrical, thermal and optical stimulation, to sensors for pH, temperature and mechanical strain. The semiconductor materials include silicon, gallium arsenide and gallium nitride, co-integrated with metals, metal oxides and polymers, to provide these and other operational capabilities. Ex vivo physiological experiments demonstrate various functions and methodological possibilities for cardiac research and therapy. PMID:24569383

  18. 3D multifunctional integumentary membranes for spatiotemporal cardiac measurements and stimulation across the entire epicardium.

    PubMed

    Xu, Lizhi; Gutbrod, Sarah R; Bonifas, Andrew P; Su, Yewang; Sulkin, Matthew S; Lu, Nanshu; Chung, Hyun-Joong; Jang, Kyung-In; Liu, Zhuangjian; Ying, Ming; Lu, Chi; Webb, R Chad; Kim, Jong-Seon; Laughner, Jacob I; Cheng, Huanyu; Liu, Yuhao; Ameen, Abid; Jeong, Jae-Woong; Kim, Gwang-Tae; Huang, Yonggang; Efimov, Igor R; Rogers, John A

    2014-02-25

    Means for high-density multiparametric physiological mapping and stimulation are critically important in both basic and clinical cardiology. Current conformal electronic systems are essentially 2D sheets, which cannot cover the full epicardial surface or maintain reliable contact for chronic use without sutures or adhesives. Here we create 3D elastic membranes shaped precisely to match the epicardium of the heart via the use of 3D printing, as a platform for deformable arrays of multifunctional sensors, electronic and optoelectronic components. Such integumentary devices completely envelop the heart, in a form-fitting manner, and possess inherent elasticity, providing a mechanically stable biotic/abiotic interface during normal cardiac cycles. Component examples range from actuators for electrical, thermal and optical stimulation, to sensors for pH, temperature and mechanical strain. The semiconductor materials include silicon, gallium arsenide and gallium nitride, co-integrated with metals, metal oxides and polymers, to provide these and other operational capabilities. Ex vivo physiological experiments demonstrate various functions and methodological possibilities for cardiac research and therapy.

  19. Quantum Nondemolition Measurement of a Quantum Squeezed State Beyond the 3 dB Limit

    NASA Astrophysics Data System (ADS)

    Lei, C. U.; Weinstein, A. J.; Suh, J.; Wollman, E. E.; Kronwald, A.; Marquardt, F.; Clerk, A. A.; Schwab, K. C.

    2016-09-01

    We use a reservoir engineering technique based on two-tone driving to generate and stabilize a quantum squeezed state of a micron-scale mechanical oscillator in a microwave optomechanical system. Using an independent backaction-evading measurement to directly quantify the squeezing, we observe 4.7 ±0.9 dB of squeezing below the zero-point level surpassing the 3 dB limit of standard parametric squeezing techniques. Our measurements also reveal evidence for an additional mechanical parametric effect. The interplay between this effect and the optomechanical interaction enhances the amount of squeezing obtained in the experiment.

  20. 3D measurement of the human body for apparel mass customization

    NASA Astrophysics Data System (ADS)

    Xu, Bugao; Lin, Sheng; Chen, Tong

    2000-12-01

    An automatic body measurement system is essential for apparel mass customization. This paper introduces the development of a body-scanning system using the multi-line triangulation technique, and methods for body size extraction and body modeling. The scanning system can rapidly acquire the surface data of a body, provide accurate body dimensions, many of which are not measurable with conventional methods, and also construct a body form based on the scanned data as a digital model of the body for 3D garment design and for virtual try-on of a designed garment.

  1. Virtual performer: single camera 3D measuring system for interaction in virtual space

    NASA Astrophysics Data System (ADS)

    Sakamoto, Kunio; Taneji, Shoto

    2006-10-01

    The authors developed interaction media systems in the 3D virtual space. In these systems, the musician virtually plays an instrument like the theremin in the virtual space or the performer plays a show using the virtual character such as a puppet. This interactive virtual media system consists of the image capture, measuring performer's position, detecting and recognizing motions and synthesizing video image using the personal computer. In this paper, we propose some applications of interaction media systems; a virtual musical instrument and superimposing CG character. Moreover, this paper describes the measuring method of the positions of the performer, his/her head and both eyes using a single camera.

  2. 3D Measurement of Forearm and Upper Arm during Throwing Motion using Body Mounted Sensor

    NASA Astrophysics Data System (ADS)

    Koda, Hideharu; Sagawa, Koichi; Kuroshima, Kouta; Tsukamoto, Toshiaki; Urita, Kazutaka; Ishibashi, Yasuyuki

    The aim of this study is to propose the measurement method of three-dimensional (3D) movement of forearm and upper arm during pitching motion of baseball using inertial sensors without serious consideration of sensor installation. Although high accuracy measurement of sports motion is achieved by using optical motion capture system at present, it has some disadvantages such as the calibration of cameras and limitation of measurement place. Whereas the proposed method for 3D measurement of pitching motion using body mounted sensors provides trajectory and orientation of upper arm by the integration of acceleration and angular velocity measured on upper limb. The trajectory of forearm is derived so that the elbow joint axis of forearm corresponds to that of upper arm. Spatial relation between upper limb and sensor system is obtained by performing predetermined movements of upper limb and utilizing angular velocity and gravitational acceleration. The integration error is modified so that the estimated final position, velocity and posture of upper limb agree with the actual ones. The experimental results of the measurement of pitching motion show that trajectories of shoulder, elbow and wrist estimated by the proposed method are highly correlated to those from the motion capture system within the estimation error of about 10 [%].

  3. An analogue contact probe using a compact 3D optical sensor for micro/nano coordinate measuring machines

    NASA Astrophysics Data System (ADS)

    Li, Rui-Jun; Fan, Kuang-Chao; Miao, Jin-Wei; Huang, Qiang-Xian; Tao, Sheng; Gong, Er-min

    2014-09-01

    This paper presents a new analogue contact probe based on a compact 3D optical sensor with high precision. The sensor comprises an autocollimator and a polarizing Michelson interferometer, which can detect two angles and one displacement of the plane mirror at the same time. In this probe system, a tungsten stylus with a ruby tip-ball is attached to a floating plate, which is supported by four V-shape leaf springs fixed to the outer case. When a contact force is applied to the tip, the leaf springs will experience elastic deformation and the plane mirror mounted on the floating plate will be displaced. The force-motion characteristics of this probe were investigated and optimum parameters were obtained with the constraint of allowable physical size of the probe. Simulation results show that the probe is uniform in 3D and its contacting force gradient is within 1 mN µm - 1. Experimental results indicate that the probe has 1 nm resolution,  ± 10 µm measuring range in X - Y plane, 10 µm measuring range in Z direction and within 30 nm measuring standard deviation. The feasibility of the probe has been preliminarily verified by testing the flatness and step height of high precision gauge blocks.

  4. Microcomputer-based technique for 3-D reconstruction and volume measurement of computer tomographic images. Part 1: Phantom studies.

    PubMed

    Albright, R E; Fram, E K

    1988-12-01

    This paper presents a microcomputer-based technique that accurately quantifies volumes from computed tomographic (CT) scans of irregularly shaped objects as well as displaying 3-D reconstructions. The method uses standard CT film, allowing analysis of previous or outside CT studies. The planimetry method showed less than 5% error in measuring irregular 2-D areas larger than 6 mm2. The method is demonstrated to be significantly more accurate than spherical, ellipsoid, or rectangular geometric models in quantifying object volume by CT (P less than .001). With a single gantry angle, planimetry showed a two standard deviation error under 10% in measuring the volume of irregular objects compared with an error over 30% for ellipsoid models. The inaccuracy of the spherical model (80% error) and the rectangular prism model (192% error) renders them impractical to provide quantitative object volume. Microcomputer planimetry provides an accurate and versatile means to measure the volume and produce 3-D reconstructions of objects scanned with CT, and it has potential application in quantifying tumor response with CT and magnetic resonance imaging.

  5. 3D Magnetic Measurements of Kink and Locked Modes in DIII-D

    NASA Astrophysics Data System (ADS)

    King, J. D.; Strait, E. J.; Hanson, J. M.; Paz-Soldan, C.; Logan, N. C.; Lanctot, M. J.; Shiraki, D.

    2013-10-01

    The DIII-D magnetics diagnostic has been greatly expanded to fully characterize non-axisymmetric ``3D'' fields. Five poloidal locations now recover n <= 3 , while new HFS arrays provide poloidal spectral resolution of 7.4 cm. Initial measurements suggest externally driven kink structures deviate from MARS-F and IPEC models. These variations extend to the ideal regime, where toroidal agreement is observed. The plasma response to an n = 3 RMP increases monotonically as beta increases and q95 decreases, contrary to predictions of a screening to kink valley. Finally, the temporal evolution of the 3D eigenstructure of a slowly rotating (5 Hz) quasi-static, born locked, tearing mode provides the first evidence of an appreciable n = 2 error field, and an estimate of the phase for future correction. This new 3D capability will be used to understand and optimize control of RWMs, NTV torque, ELMs, and error field correction to extend stable tokamak operation. Work supported in part by the US Department of Energy under DE-AC05-00OR22725, DE-FC02-04ER54698, DE-FG02-95ER54309, DE-AC02-09CH11466, DE-FG02-04ER54761 and DE-AC52-07NA27344.

  6. Measurement Matrix Optimization and Mismatch Problem Compensation for DLSLA 3-D SAR Cross-Track Reconstruction

    PubMed Central

    Bao, Qian; Jiang, Chenglong; Lin, Yun; Tan, Weixian; Wang, Zhirui; Hong, Wen

    2016-01-01

    With a short linear array configured in the cross-track direction, downward looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) can obtain the 3-D image of an imaging scene. To improve the cross-track resolution, sparse recovery methods have been investigated in recent years. In the compressive sensing (CS) framework, the reconstruction performance depends on the property of measurement matrix. This paper concerns the technique to optimize the measurement matrix and deal with the mismatch problem of measurement matrix caused by the off-grid scatterers. In the model of cross-track reconstruction, the measurement matrix is mainly affected by the configuration of antenna phase centers (APC), thus, two mutual coherence based criteria are proposed to optimize the configuration of APCs. On the other hand, to compensate the mismatch problem of the measurement matrix, the sparse Bayesian inference based method is introduced into the cross-track reconstruction by jointly estimate the scatterers and the off-grid error. Experiments demonstrate the performance of the proposed APCs’ configuration schemes and the proposed cross-track reconstruction method. PMID:27556471

  7. Flow measurements in a model centrifugal pump by 3-D PIV

    NASA Astrophysics Data System (ADS)

    Yang, H.; Xu, H. R.; Liu, C.

    2012-11-01

    PIV (Particle Image Velocimetry), as an non-intrusive flow measurements technology, is widely used to investigate the flow fields in many areas. 3-D (three Dimensional) PIV has seldom been used to measure flow field in rotational impeller of centrifugal pump due to the difficulty of calibration in samll space. In this article, a specially manufactured water tank was used to perform the calibration for 3-D PIV measurement. The instantaneous absolute velocity in one impeller passage was obtained by merging of three sub zones and the relative velocity was acquired by velocity decomposition. The result shows that, when the pump runs at the condition of design flow rate, the radial component velocity Wr appears a concave distribution except the condition of R=45 mm. With the increase of radius, the circumference location of the minimum radial component velocity Wr moves from the pressure side to the suction side. At the same time, the tangential component velocity Wθ on the suction side decreases gradually with the increase of radius, while the component on the pressure side increases gradually. The secondary flow in different radius section has also been shown. At last, the error of PIV measurements was analyzed, which shows that the test results are accurate and the measured data is reliable.

  8. Measurement Matrix Optimization and Mismatch Problem Compensation for DLSLA 3-D SAR Cross-Track Reconstruction.

    PubMed

    Bao, Qian; Jiang, Chenglong; Lin, Yun; Tan, Weixian; Wang, Zhirui; Hong, Wen

    2016-08-22

    With a short linear array configured in the cross-track direction, downward looking sparse linear array three-dimensional synthetic aperture radar (DLSLA 3-D SAR) can obtain the 3-D image of an imaging scene. To improve the cross-track resolution, sparse recovery methods have been investigated in recent years. In the compressive sensing (CS) framework, the reconstruction performance depends on the property of measurement matrix. This paper concerns the technique to optimize the measurement matrix and deal with the mismatch problem of measurement matrix caused by the off-grid scatterers. In the model of cross-track reconstruction, the measurement matrix is mainly affected by the configuration of antenna phase centers (APC), thus, two mutual coherence based criteria are proposed to optimize the configuration of APCs. On the other hand, to compensate the mismatch problem of the measurement matrix, the sparse Bayesian inference based method is introduced into the cross-track reconstruction by jointly estimate the scatterers and the off-grid error. Experiments demonstrate the performance of the proposed APCs' configuration schemes and the proposed cross-track reconstruction method.

  9. Research on Joint Parameter Inversion for an Integrated Underground Displacement 3D Measuring Sensor

    PubMed Central

    Shentu, Nanying; Qiu, Guohua; Li, Qing; Tong, Renyuan; Shentu, Nankai; Wang, Yanjie

    2015-01-01

    Underground displacement monitoring is a key means to monitor and evaluate geological disasters and geotechnical projects. There exist few practical instruments able to monitor subsurface horizontal and vertical displacements simultaneously due to monitoring invisibility and complexity. A novel underground displacement 3D measuring sensor had been proposed in our previous studies, and great efforts have been taken in the basic theoretical research of underground displacement sensing and measuring characteristics by virtue of modeling, simulation and experiments. This paper presents an innovative underground displacement joint inversion method by mixing a specific forward modeling approach with an approximate optimization inversion procedure. It can realize a joint inversion of underground horizontal displacement and vertical displacement for the proposed 3D sensor. Comparative studies have been conducted between the measured and inversed parameters of underground horizontal and vertical displacements under a variety of experimental and inverse conditions. The results showed that when experimentally measured horizontal displacements and vertical displacements are both varied within 0 ~ 30 mm, horizontal displacement and vertical displacement inversion discrepancies are generally less than 3 mm and 1 mm, respectively, under three kinds of simulated underground displacement monitoring circumstances. This implies that our proposed underground displacement joint inversion method is robust and efficient to predict the measuring values of underground horizontal and vertical displacements for the proposed sensor. PMID:25871714

  10. Proof of Concept of Integrated Load Measurement in 3D Printed Structures

    PubMed Central

    Hinderdael, Michaël; Jardon, Zoé; Lison, Margot; De Baere, Dieter; Devesse, Wim; Strantza, Maria; Guillaume, Patrick

    2017-01-01

    Currently, research on structural health monitoring systems is focused on direct integration of the system into a component or structure. The latter results in a so-called smart structure. One example of a smart structure is a component with integrated strain sensing for continuous load monitoring. Additive manufacturing, or 3D printing, now also enables such integration of functions inside components. As a proof-of-concept, the Fused Deposition Modeling (FDM) technique was used to integrate a strain sensing element inside polymer (ABS) tensile test samples. The strain sensing element consisted of a closed capillary filled with a fluid and connected to an externally mounted pressure sensor. The volumetric deformation of the integrated capillary resulted in pressure changes in the fluid. The obtained pressure measurements during tensile testing are reported in this paper and compared to state-of-the-art extensometer measurements. The sensitivity of the 3D printed pressure-based strain sensor is primarily a function of the compressibility of the capillary fluid. Air- and watertightness are of critical importance for the proper functioning of the 3D printed pressure-based strain sensor. Therefore, the best after-treatment procedure was selected on basis of a comparative analysis. The obtained pressure measurements are linear with respect to the extensometer readings, and the uncertainty on the strain measurement of a capillary filled with water (incompressible fluid) is ±3.1 µstrain, which is approximately three times less sensitive than conventional strain gauges (±1 µstrain), but 32 times more sensitive than the same sensor based on air (compressible fluid) (±101 µstrain). PMID:28208779

  11. Proof of Concept of Integrated Load Measurement in 3D Printed Structures.

    PubMed

    Hinderdael, Michaël; Jardon, Zoé; Lison, Margot; De Baere, Dieter; Devesse, Wim; Strantza, Maria; Guillaume, Patrick

    2017-02-09

    Currently, research on structural health monitoring systems is focused on direct integration of the system into a component or structure. The latter results in a so-called smart structure. One example of a smart structure is a component with integrated strain sensing for continuous load monitoring. Additive manufacturing, or 3D printing, now also enables such integration of functions inside components. As a proof-of-concept, the Fused Deposition Modeling (FDM) technique was used to integrate a strain sensing element inside polymer (ABS) tensile test samples. The strain sensing element consisted of a closed capillary filled with a fluid and connected to an externally mounted pressure sensor. The volumetric deformation of the integrated capillary resulted in pressure changes in the fluid. The obtained pressure measurements during tensile testing are reported in this paper and compared to state-of-the-art extensometer measurements. The sensitivity of the 3D printed pressure-based strain sensor is primarily a function of the compressibility of the capillary fluid. Air- and watertightness are of critical importance for the proper functioning of the 3D printed pressure-based strain sensor. Therefore, the best after-treatment procedure was selected on basis of a comparative analysis. The obtained pressure measurements are linear with respect to the extensometer readings, and the uncertainty on the strain measurement of a capillary filled with water (incompressible fluid) is ±3.1 µstrain, which is approximately three times less sensitive than conventional strain gauges (±1 µstrain), but 32 times more sensitive than the same sensor based on air (compressible fluid) (±101 µstrain).

  12. 3-D density imaging with muon flux measurements from underground galleries

    NASA Astrophysics Data System (ADS)

    Lesparre, N.; Cabrera, J.; Marteau, J.

    2017-03-01

    Atmospheric muon flux measurements provide information on subsurface density distribution. In this study, muon flux was measured underground, in the Tournemire experimental platform (France). The objective was to image the medium between the galleries and the surface and evaluate the feasibility to detect the presence of discontinuities, for example, produced by secondary subvertical faults or by karstic networks. Measurements were performed from three different sites with a partial overlap of muon trajectories, offering the possibility to seek density variations at different depths. The conversion of the measured muon flux to average density values showed global variations further analysed through a 3-D nonlinear inversion procedure. Main results are the presence of a very low density region at the level of the upper aquifer, compatible with the presence of a karstic network hosting local cavities, and the absence of secondary faults. We discuss the validity of the present results and propose different strategies to improve the accuracy of such measurements and analysis.

  13. Practical resolution requirements of measurement instruments for precise characterization of autostereoscopic 3D displays

    NASA Astrophysics Data System (ADS)

    Boher, Pierre; Leroux, Thierry; Collomb-Patton, Véronique; Bignon, Thibault

    2014-03-01

    Different ways to evaluate the optical performances of auto-stereoscopic 3D displays are reviewed. Special attention is paid to the crosstalk measurements that can be performed by measuring, either the precise angular emission at one or few locations on the display surface, or the full display surface emission from very specific locations in front of the display. Using measurements made in the two ways with different instruments on different auto-stereoscopic displays, we show that measurement instruments need to match the resolution of the human eye to obtain reliable results in both cases. Practical requirements in terms of angular resolution for viewing angle measurement instruments and in terms of spatial resolution for imaging instruments are derived and verified on practical examples.

  14. Detection and Purging of Specular Reflective and Transparent Object Influences in 3d Range Measurements

    NASA Astrophysics Data System (ADS)

    Koch, R.; May, S.; Nüchter, A.

    2017-02-01

    3D laser scanners are favoured sensors for mapping in mobile service robotics at indoor and outdoor applications, since they deliver precise measurements at a wide scanning range. The resulting maps are detailed since they have a high resolution. Based on these maps robots navigate through rough terrain, fulfil advanced manipulation, and inspection tasks. In case of specular reflective and transparent objects, e.g., mirrors, windows, shiny metals, the laser measurements get corrupted. Based on the type of object and the incident angle of the incoming laser beam there are three results possible: a measurement point on the object plane, a measurement behind the object plane, and a measurement of a reflected object. It is important to detect such situations to be able to handle these corrupted points. This paper describes why it is difficult to distinguish between specular reflective and transparent surfaces. It presents a 3DReflection- Pre-Filter Approach to identify specular reflective and transparent objects in point clouds of a multi-echo laser scanner. Furthermore, it filters point clouds from influences of such objects and extract the object properties for further investigations. Based on an Iterative-Closest-Point-algorithm reflective objects are identified. Object surfaces and points behind surfaces are masked according to their location. Finally, the processed point cloud is forwarded to a mapping module. Furthermore, the object surface corners and the type of the surface is broadcasted. Four experiments demonstrate the usability of the 3D-Reflection-Pre-Filter. The first experiment was made in a empty room containing a mirror, the second experiment was made in a stairway containing a glass door, the third experiment was made in a empty room containing two mirrors, the fourth experiment was made in an office room containing a mirror. This paper demonstrate that for single scans the detection of specular reflective and transparent objects in 3D is possible. It

  15. Innovative LIDAR 3D Dynamic Measurement System to estimate fruit-tree leaf area.

    PubMed

    Sanz-Cortiella, Ricardo; Llorens-Calveras, Jordi; Escolà, Alexandre; Arnó-Satorra, Jaume; Ribes-Dasi, Manel; Masip-Vilalta, Joan; Camp, Ferran; Gràcia-Aguilá, Felip; Solanelles-Batlle, Francesc; Planas-DeMartí, Santiago; Pallejà-Cabré, Tomàs; Palacin-Roca, Jordi; Gregorio-Lopez, Eduard; Del-Moral-Martínez, Ignacio; Rosell-Polo, Joan R

    2011-01-01

    In this work, a LIDAR-based 3D Dynamic Measurement System is presented and evaluated for the geometric characterization of tree crops. Using this measurement system, trees were scanned from two opposing sides to obtain two three-dimensional point clouds. After registration of the point clouds, a simple and easily obtainable parameter is the number of impacts received by the scanned vegetation. The work in this study is based on the hypothesis of the existence of a linear relationship between the number of impacts of the LIDAR sensor laser beam on the vegetation and the tree leaf area. Tests performed under laboratory conditions using an ornamental tree and, subsequently, in a pear tree orchard demonstrate the correct operation of the measurement system presented in this paper. The results from both the laboratory and field tests confirm the initial hypothesis and the 3D Dynamic Measurement System is validated in field operation. This opens the door to new lines of research centred on the geometric characterization of tree crops in the field of agriculture and, more specifically, in precision fruit growing.

  16. Mobile large scale 3D coordinate measuring system based on network of rotating laser automatic theodolites

    NASA Astrophysics Data System (ADS)

    Liu, Zhigang; Liu, Zhongzheng; Wu, Jianwei; Xu, Yaozhong

    2010-08-01

    This paper presents a mobile 3D coordinate measuring system for large scale metrology. This system is composed of a network of rotating laser automatic theodolites (N-RLATs) and a portable touch probe. In the N-RLAT system, each RLAT consists of two laser fans which rotate about its own Z axis at a constant speed and scan the whole metrology space. The optical sensors mounted on the portable touch probe receive the sweeping laser fans and generate the corresponding pulse signals, which establish a relationship between rotating angle of laser fan and time, and then the space angle measurement is converted into the corresponding peak time precision measurement of pulse signal. The rotating laser fans are modeled mathematically as a time varying parametrical vector in its local framework. A two steps on-site calibration method for solving the parameters of each RLAT and coordinate transformation among the N-RLATs. The portable probe is composed of optical sensors array with specified geometrical features and a touch point, on which the coordinates of optical sensors is determined by the N-RLATs and the touch point is estimated by solving a non-linear system. A prototype mobile 3D coordinate measuring system is developed and experiment results show its validity.

  17. Underwater 3D Surface Measurement Using Fringe Projection Based Scanning Devices

    PubMed Central

    Bräuer-Burchardt, Christian; Heinze, Matthias; Schmidt, Ingo; Kühmstedt, Peter; Notni, Gunther

    2015-01-01

    In this work we show the principle of optical 3D surface measurements based on the fringe projection technique for underwater applications. The challenges of underwater use of this technique are shown and discussed in comparison with the classical application. We describe an extended camera model which takes refraction effects into account as well as a proposal of an effective, low-effort calibration procedure for underwater optical stereo scanners. This calibration technique combines a classical air calibration based on the pinhole model with ray-based modeling and requires only a few underwater recordings of an object of known length and a planar surface. We demonstrate a new underwater 3D scanning device based on the fringe projection technique. It has a weight of about 10 kg and the maximal water depth for application of the scanner is 40 m. It covers an underwater measurement volume of 250 mm × 200 mm × 120 mm. The surface of the measurement objects is captured with a lateral resolution of 150 μm in a third of a second. Calibration evaluation results are presented and examples of first underwater measurements are given. PMID:26703624

  18. Mining 3D Patterns from Gene Expression Temporal Data: A New Tricluster Evaluation Measure

    PubMed Central

    2014-01-01

    Microarrays have revolutionized biotechnological research. The analysis of new data generated represents a computational challenge due to the characteristics of these data. Clustering techniques are applied to create groups of genes that exhibit a similar behavior. Biclustering emerges as a valuable tool for microarray data analysis since it relaxes the constraints for grouping, allowing genes to be evaluated only under a subset of the conditions. However, if a third dimension appears in the data, triclustering is the appropriate tool for the analysis. This occurs in longitudinal experiments in which the genes are evaluated under conditions at several time points. All clustering, biclustering, and triclustering techniques guide their search for solutions by a measure that evaluates the quality of clusters. We present an evaluation measure for triclusters called Mean Square Residue 3D. This measure is based on the classic biclustering measure Mean Square Residue. Mean Square Residue 3D has been applied to both synthetic and real data and it has proved to be capable of extracting groups of genes with homogeneous patterns in subsets of conditions and times, and these groups have shown a high correlation level and they are also related to their functional annotations extracted from the Gene Ontology project. PMID:25143987

  19. 3D printing of soft and wet systems benefit from hard-to-soft transition of transparent shape memory gels (presentation video)

    NASA Astrophysics Data System (ADS)

    Furukawa, Hidemitsu; Gong, Jin; Makino, Masato; Kabir, Md. Hasnat

    2014-04-01

    Recently we successfully developed novel transparent shape memory gels. The SMG memorize their original shapes during the gelation process. In the room temperature, the SMG are elastic and show plasticity (yielding) under deformation. However when heated above about 50˚C, the SMG induce hard-to-soft transition and go back to their original shapes automatically. We focus on new soft and wet systems made of the SMG by 3-D printing technology.

  20. Assessing the potential of low-cost 3D cameras for the rapid measurement of plant woody structure.

    PubMed

    Nock, Charles A; Taugourdeau, Olivier; Delagrange, Sylvain; Messier, Christian

    2013-11-27

    Detailed 3D plant architectural data have numerous applications in plant science, but many existing approaches for 3D data collection are time-consuming and/or require costly equipment. Recently, there has been rapid growth in the availability of low-cost, 3D cameras and related open source software applications. 3D cameras may provide measurements of key components of plant architecture such as stem diameters and lengths, however, few tests of 3D cameras for the measurement of plant architecture have been conducted. Here, we measured Salix branch segments ranging from 2-13 mm in diameter with an Asus Xtion camera to quantify the limits and accuracy of branch diameter measurement with a 3D camera. By scanning at a variety of distances we also quantified the effect of scanning distance. In addition, we also test the sensitivity of the program KinFu for continuous 3D object scanning and modeling as well as other similar software to accurately record stem diameters and capture plant form (<3 m in height). Given its ability to accurately capture the diameter of branches >6 mm, Asus Xtion may provide a novel method for the collection of 3D data on the branching architecture of woody plants. Improvements in camera measurement accuracy and available software are likely to further improve the utility of 3D cameras for plant sciences in the future.

  1. Assessing the Potential of Low-Cost 3D Cameras for the Rapid Measurement of Plant Woody Structure

    PubMed Central

    Nock, Charles A; Taugourdeau, Olivier; Delagrange, Sylvain; Messier, Christian

    2013-01-01

    Detailed 3D plant architectural data have numerous applications in plant science, but many existing approaches for 3D data collection are time-consuming and/or require costly equipment. Recently, there has been rapid growth in the availability of low-cost, 3D cameras and related open source software applications. 3D cameras may provide measurements of key components of plant architecture such as stem diameters and lengths, however, few tests of 3D cameras for the measurement of plant architecture have been conducted. Here, we measured Salix branch segments ranging from 2–13 mm in diameter with an Asus Xtion camera to quantify the limits and accuracy of branch diameter measurement with a 3D camera. By scanning at a variety of distances we also quantified the effect of scanning distance. In addition, we also test the sensitivity of the program KinFu for continuous 3D object scanning and modeling as well as other similar software to accurately record stem diameters and capture plant form (<3 m in height). Given its ability to accurately capture the diameter of branches >6 mm, Asus Xtion may provide a novel method for the collection of 3D data on the branching architecture of woody plants. Improvements in camera measurement accuracy and available software are likely to further improve the utility of 3D cameras for plant sciences in the future. PMID:24287538

  2. In Vivo 3D Analysis of Thoracic Kinematics: Changes in Size and Shape During Breathing and Their Implications for Respiratory Function in Recent Humans and Fossil Hominins.

    PubMed

    Bastir, Markus; García-Martínez, Daniel; Torres-Tamayo, Nicole; Sanchis-Gimeno, Juan Alberto; O'Higgins, Paul; Utrilla, Cristina; Torres Sánchez, Isabel; García Río, Francisco

    2017-02-01

    The human ribcage expands and contracts during respiration as a result of the interaction between the morphology of the ribs, the costo-vertebral articulations and respiratory muscles. Variations in these factors are said to produce differences in the kinematics of the upper thorax and the lower thorax, but the extent and nature of any such differences and their functional implications have not yet been quantified. Applying geometric morphometrics we measured 402 three-dimensional (3D) landmarks and semilandmarks of 3D models built from computed tomographic scans of thoraces of 20 healthy adult subjects in maximal forced inspiration (FI) and expiration (FE). We addressed the hypothesis that upper and lower parts of the ribcage differ in kinematics and compared different models of functional compartmentalization. During inspiration the thorax superior to the level of the sixth ribs undergoes antero-posterior expansion that differs significantly from the medio-lateral expansion characteristic of the thorax below this level. This supports previous suggestions for dividing the thorax into a pulmonary and diaphragmatic part. While both compartments differed significantly in mean size and shape during FE and FI the size changes in the lower compartment were significantly larger. Additionally, for the same degree of kinematic shape change, the pulmonary thorax changes less in size than the diaphragmatic thorax. Therefore, variations in the form and function of the diaphragmatic thorax will have a strong impact on respiratory function. This has important implications for interpreting differences in thorax shape in terms of respiratory functional differences within and among recent humans and fossil hominins. Anat Rec, 300:255-264, 2017. © 2016 Wiley Periodicals, Inc.

  3. Shape measurement and vibration analysis of moving speaker cone

    NASA Astrophysics Data System (ADS)

    Zhang, Qican; Liu, Yuankun; Lehtonen, Petri

    2014-06-01

    Surface three-dimensional (3-D) shape information is needed for many fast processes such as structural testing of material, standing waves on loudspeaker cone, etc. Usually measurement is done from limited number of points using electrical sensors or laser distance meters. Fourier Transform Profilometry (FTP) enables fast shape measurement of the whole surface. Method is based on angled sinusoidal fringe pattern projection and image capturing. FTP requires only one image of the deformed fringe pattern to restore the 3-D shape of the measured object, which makes real-time or dynamic data processing possible. In our experiment the method was used for loudspeaker cone distortion measurement in dynamic conditions. For sound quality issues it is important that the whole cone moves in same phase and there are no partial waves. Our imaging resolution was 1280x1024 pixels and frame rate was 200 fps. Using our setup we found unwanted spatial waves in our sample cone.

  4. Reproducibility of 3D kinematics and surface electromyography measurements of mastication.

    PubMed

    Remijn, Lianne; Groen, Brenda E; Speyer, Renée; van Limbeek, Jacques; Nijhuis-van der Sanden, Maria W G

    2016-03-01

    The aim of this study was to determine the measurement reproducibility for a procedure evaluating the mastication process and to estimate the smallest detectable differences of 3D kinematic and surface electromyography (sEMG) variables. Kinematics of mandible movements and sEMG activity of the masticatory muscles were obtained over two sessions with four conditions: two food textures (biscuit and bread) of two sizes (small and large). Twelve healthy adults (mean age 29.1 years) completed the study. The second to the fifth chewing cycle of 5 bites were used for analyses. The reproducibility per outcome variable was calculated with an intraclass correlation coefficient (ICC) and a Bland-Altman analysis was applied to determine the standard error of measurement relative error of measurement and smallest detectable differences of all variables. ICCs ranged from 0.71 to 0.98 for all outcome variables. The outcome variables consisted of four bite and fourteen chewing cycle variables. The relative standard error of measurement of the bite variables was up to 17.3% for 'time-to-swallow', 'time-to-transport' and 'number of chewing cycles', but ranged from 31.5% to 57.0% for 'change of chewing side'. The relative standard error of measurement ranged from 4.1% to 24.7% for chewing cycle variables and was smaller for kinematic variables than sEMG variables. In general, measurements obtained with 3D kinematics and sEMG are reproducible techniques to assess the mastication process. The duration of the chewing cycle and frequency of chewing were the best reproducible measurements. Change of chewing side could not be reproduced. The published measurement error and smallest detectable differences will aid the interpretation of the results of future clinical studies using the same study variables.

  5. X-Ray and Optical Videography for 3D Measurement of Capillary and Melt Pool Geometry in Laser Welding

    NASA Astrophysics Data System (ADS)

    Boley, M.; Abt, F.; Weber, R.; Graf, T.

    This paper describes a method to reconstruct the 3D shape of the melt pool and the capillary of a laser keyhole welding process. Three different diagnostic methods, including X-Ray and optical videography as well as metallographic cross sections are combined to gain the three dimensional data of the solidus-liquidus-surface. A detailed description of the experimental setup and a discussion of different methods to combine the 2D data sets of the three different diagnostic methods to a 3D-model will be given. The result will be a static 3D description of the welding process.

  6. 3D measurements in conventional X-ray imaging with RGB-D sensors.

    PubMed

    Albiol, Francisco; Corbi, Alberto; Albiol, Alberto

    2017-04-01

    A method for deriving 3D internal information in conventional X-ray settings is presented. It is based on the combination of a pair of radiographs from a patient and it avoids the use of X-ray-opaque fiducials and external reference structures. To achieve this goal, we augment an ordinary X-ray device with a consumer RGB-D camera. The patient' s rotation around the craniocaudal axis is tracked relative to this camera thanks to the depth information provided and the application of a modern surface-mapping algorithm. The measured spatial information is then translated to the reference frame of the X-ray imaging system. By using the intrinsic parameters of the diagnostic equipment, epipolar geometry, and X-ray images of the patient at different angles, 3D internal positions can be obtained. Both the RGB-D and X-ray instruments are first geometrically calibrated to find their joint spatial transformation. The proposed method is applied to three rotating phantoms. The first two consist of an anthropomorphic head and a torso, which are filled with spherical lead bearings at precise locations. The third one is made of simple foam and has metal needles of several known lengths embedded in it. The results show that it is possible to resolve anatomical positions and lengths with a millimetric level of precision. With the proposed approach, internal 3D reconstructed coordinates and distances can be provided to the physician. It also contributes to reducing the invasiveness of ordinary X-ray environments and can replace other types of clinical explorations that are mainly aimed at measuring or geometrically relating elements that are present inside the patient's body.

  7. Model-based correction of velocity measurements in navigated 3-D ultrasound imaging during neurosurgical interventions.

    PubMed

    Iversen, Daniel Hoyer; Lindseth, Frank; Unsgaard, Geirmund; Torp, Hans; Lovstakken, Lasse

    2013-09-01

    In neurosurgery, information of blood flow is important to identify and avoid damage to important vessels. Three-dimensional intraoperative ultrasound color-Doppler imaging has proven useful in this respect. However, due to Doppler angle-dependencies and the complexity of the vascular architecture, clinical valuable 3-D information of flow direction and velocity is currently not available. In this work, we aim to correct for angle-dependencies in 3-D flow images based on a geometric model of the neurovascular tree generated on-the-fly from free-hand 2-D imaging and an accurate position sensor system. The 3-D vessel model acts as a priori information of vessel orientation used to angle-correct the Doppler measurements, as well as provide an estimate of the average flow direction. Based on the flow direction we were also able to do aliasing correction to approximately double the measurable velocity range. In vitro experiments revealed a high accuracy and robustness for estimating the mean direction of flow. Accurate angle-correction of axial velocities were possible given a sufficient beam-to-flow angle for at least parts of a vessel segment . In vitro experiments showed an absolute relative bias of 9.5% for a challenging low-flow scenario. The method also showed promising results in vivo, improving the depiction of flow in the distal branches of intracranial aneurysms and the feeding arteries of an arteriovenous malformation. Careful inspection by an experienced surgeon confirmed the correct flow direction for all in vivo examples.

  8. Precision depth measurement of through silicon vias (TSVs) on 3D semiconductor packaging process.

    PubMed

    Jin, Jonghan; Kim, Jae Wan; Kang, Chu-Shik; Kim, Jong-Ahn; Lee, Sunghun

    2012-02-27

    We have proposed and demonstrated a novel method to measure depths of through silicon vias (TSVs) at high speed. TSVs are fine and deep holes fabricated in silicon wafers for 3D semiconductors; they are used for electrical connections between vertically stacked wafers. Because the high-aspect ratio hole of the TSV makes it difficult for light to reach the bottom surface, conventional optical methods using visible lights cannot determine the depth value. By adopting an optical comb of a femtosecond pulse laser in the infra-red range as a light source, the depths of TSVs having aspect ratio of about 7 were measured. This measurement was done at high speed based on spectral resolved interferometry. The proposed method is expected to be an alternative method for depth inspection of TSVs.

  9. Registration of Feature-Poor 3D Measurements from Fringe Projection

    PubMed Central

    von Enzberg, Sebastian; Al-Hamadi, Ayoub; Ghoneim, Ahmed

    2016-01-01

    We propose a novel method for registration of partly overlapping three-dimensional surface measurements for stereo-based optical sensors using fringe projection. Based on two-dimensional texture matching, it allows global registration of surfaces with poor and ambiguous three-dimensional features, which are common to surface inspection applications. No prior information about relative sensor position is necessary, which makes our approach suitable for semi-automatic and manual measurement. The algorithm is robust and works with challenging measurements, including uneven illumination, surfaces with specular reflection as well as sparsely textured surfaces. We show that precisions of 1 mm and below can be achieved along the surfaces, which is necessary for further local 3D registration. PMID:26927106

  10. An experimental technique for performing 3-D LDA measurements inside whirling annular seals

    NASA Technical Reports Server (NTRS)

    Morrison, Gerald L.; Johnson, Mark C.; Deotte, Robert E., Jr.; Thames, H. Davis, III.; Wiedner, Brian G.

    1992-01-01

    During the last several years, the Fluid Mechanics Division of the Turbomachinery Laboratory at Texas A&M University has developed a rather unique facility with the experimental capability for measuring the flow field inside journal bearings, labyrinth seals, and annular seals. The facility consists of a specially designed 3-D LDA system which is capable of measuring the instantaneous velocity vector within 0.2 mm of a wall while the laser beams are aligned almost perpendicular to the wall. This capability was required to measure the flow field inside journal bearings, labyrinth seals, and annular seals. A detailed description of this facility along with some representative results obtained for a whirling annular seal are presented.

  11. Full optical characterization of autostereoscopic 3D displays using local viewing angle and imaging measurements

    NASA Astrophysics Data System (ADS)

    Boher, Pierre; Leroux, Thierry; Bignon, Thibault; Collomb-Patton, Véronique

    2012-03-01

    Two commercial auto-stereoscopic 3D displays are characterized a using Fourier optics viewing angle system and an imaging video-luminance-meter. One display has a fixed emissive configuration and the other adapts its emission to the observer position using head tracking. For a fixed emissive condition, three viewing angle measurements are performed at three positions (center, right and left). Qualified monocular and binocular viewing spaces in front of the display are deduced as well as the best working distance. The imaging system is then positioned at this working distance and crosstalk homogeneity on the entire surface of the display is measured. We show that the crosstalk is generally not optimized on all the surface of the display. Display aspect simulation using viewing angle measurements allows understanding better the origin of those crosstalk variations. Local imperfections like scratches and marks generally increase drastically the crosstalk, demonstrating that cleanliness requirements for this type of display are quite critical.

  12. A portable instrument for 3-D dynamic robot measurements using triangulation and laser tracking

    SciTech Connect

    Mayer, J.R.R. . Mechanical Engineering Dept.); Parker, G.A. . Dept. of Mechanical Engineering)

    1994-08-01

    The paper describes the development and validation of a 3-D measurement instrument capable of determining the static and dynamic performance of industrial robots to ISO standards. Using two laser beams to track an optical target attached to the robot end-effector, the target position coordinates may be estimated, relative to the instrument coordinate frame, to a high accuracy using triangulation principles. The effect of variations in the instrument geometry from the nominal model is evaluated through a kinematic model of the tracking head. Significant improvements of the measurement accuracy are then obtained by a simple adjustment of the main parameters. Extensive experimental test results are included to demonstrate the instrument performance. Finally typical static and dynamic measurement results for an industrial robot are presented to illustrate the effectiveness and usefulness of the instrument.

  13. A flexible new method for 3D measurement based on multi-view image sequences

    NASA Astrophysics Data System (ADS)

    Cui, Haihua; Zhao, Zhimin; Cheng, Xiaosheng; Guo, Changye; Jia, Huayu

    2016-11-01

    Three-dimensional measurement is the base part for reverse engineering. The paper developed a new flexible and fast optical measurement method based on multi-view geometry theory. At first, feature points are detected and matched with improved SIFT algorithm. The Hellinger Kernel is used to estimate the histogram distance instead of traditional Euclidean distance, which is immunity to the weak texture image; then a new filter three-principle for filtering the calculation of essential matrix is designed, the essential matrix is calculated using the improved a Contrario Ransac filter method. One view point cloud is constructed accurately with two view images; after this, the overlapped features are used to eliminate the accumulated errors caused by added view images, which improved the camera's position precision. At last, the method is verified with the application of dental restoration CAD/CAM, experiment results show that the proposed method is fast, accurate and flexible for tooth 3D measurement.

  14. Two-dimensional ultrasound measurement of thyroid gland volume: a new equation with higher correlation with 3-D ultrasound measurement.

    PubMed

    Ying, Michael; Yung, Dennis M C; Ho, Karen K L

    2008-01-01

    This study aimed to develop a new two-dimensional (2-D) ultrasound thyroid volume estimation equation using three-dimensional (3-D) ultrasound as the standard of reference, and to compare the thyroid volume estimation accuracy of the new equation with three previously reported equations. 2-D and 3-D ultrasound examinations of the thyroid gland were performed in 150 subjects with normal serum thyrotropin (TSH, thyroid-stimulating hormone) and free thyroxine (fT4) levels (63 men and 87 women, age range: 17 to 71 y). In each subject, the volume of both thyroid lobes was measured by 3-D ultrasound. On 2-D ultrasound, the craniocaudal (CC), lateromedial (LM) and anteroposterior (AP) dimensions of the thyroid lobes were measured. The equation was derived by correlating the volume of the thyroid lobes measured with 3-D ultrasound and the product of the three dimensions measured with 2-D ultrasound using linear regression analysis, in 75 subjects without thyroid nodule. The accuracy of thyroid volume estimation of the new equation and the three previously reported equations was evaluated and compared in another 75 subjects (without thyroid nodule, n = 30; with thyroid nodule, n = 45). It is suggested that volume of thyroid lobe may be estimated as: volume of thyroid lobe = 0.38.(CC.LM.AP) + 1.76. Result showed that the new equation (16.9% to 36.1%) had a significantly smaller thyroid volume estimation error than the previously reported equations (20.8% to 54.9%) (p < 0.05). There was a significantly larger thyroid volume estimation error when thyroid glands with nodules were examined (p < 0.05). With the use of the appropriate thyroid volume equation, 2-D ultrasound can be a useful alternative in thyroid volume measurement when 3-D ultrasound is not available.

  15. Breast density measurement: 3D cone beam computed tomography (CBCT) images versus 2D digital mammograms

    NASA Astrophysics Data System (ADS)

    Han, Tao; Lai, Chao-Jen; Chen, Lingyun; Liu, Xinming; Shen, Youtao; Zhong, Yuncheng; Ge, Shuaiping; Yi, Ying; Wang, Tianpeng; Yang, Wei T.; Shaw, Chris C.

    2009-02-01

    Breast density has been recognized as one of the major risk factors for breast cancer. However, breast density is currently estimated using mammograms which are intrinsically 2D in nature and cannot accurately represent the real breast anatomy. In this study, a novel technique for measuring breast density based on the segmentation of 3D cone beam CT (CBCT) images was developed and the results were compared to those obtained from 2D digital mammograms. 16 mastectomy breast specimens were imaged with a bench top flat-panel based CBCT system. The reconstructed 3D CT images were corrected for the cupping artifacts and then filtered to reduce the noise level, followed by using threshold-based segmentation to separate the dense tissue from the adipose tissue. For each breast specimen, volumes of the dense tissue structures and the entire breast were computed and used to calculate the volumetric breast density. BI-RADS categories were derived from the measured breast densities and compared with those estimated from conventional digital mammograms. The results show that in 10 of 16 cases the BI-RADS categories derived from the CBCT images were lower than those derived from the mammograms by one category. Thus, breasts considered as dense in mammographic examinations may not be considered as dense with the CBCT images. This result indicates that the relation between breast cancer risk and true (volumetric) breast density needs to be further investigated.

  16. ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment with LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R

    2006-11-22

    We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.

  17. Robust automatic measurement of 3D scanned models for the human body fat estimation.

    PubMed

    Giachetti, Andrea; Lovato, Christian; Piscitelli, Francesco; Milanese, Chiara; Zancanaro, Carlo

    2015-03-01

    In this paper, we present an automatic tool for estimating geometrical parameters from 3-D human scans independent on pose and robustly against the topological noise. It is based on an automatic segmentation of body parts exploiting curve skeleton processing and ad hoc heuristics able to remove problems due to different acquisition poses and body types. The software is able to locate body trunk and limbs, detect their directions, and compute parameters like volumes, areas, girths, and lengths. Experimental results demonstrate that measurements provided by our system on 3-D body scans of normal and overweight subjects acquired in different poses are highly correlated with the body fat estimates obtained on the same subjects with dual-energy X-rays absorptiometry (DXA) scanning. In particular, maximal lengths and girths, not requiring precise localization of anatomical landmarks, demonstrate a good correlation (up to 96%) with the body fat and trunk fat. Regression models based on our automatic measurements can be used to predict body fat values reasonably well.

  18. 3D printed miniaturized spectral system for tissue fluorescence lifetime measurements

    NASA Astrophysics Data System (ADS)

    Zou, Luwei; Mahmoud, Mohamad; Fahs, Mehdi; Liu, Rui; Lo, Joe F.

    2016-04-01

    Various types of collagens, e.g. type I and III, represent the main load-bearing components in biological tissues. Their composition changes during processes like wound healing and fibrosis. Collagens exhibit autofluorescence when excited by ultra-violet light, distinguishable by their unique fluorescent lifetimes across a range of emission wavelengths. Therefore, we designed a miniaturized spectral-lifetime detection system for collagens as a non-invasive probe for monitoring tissue in wound healing and scarring applications. A sine modulated LED illumination was applied to enable frequency domain (FD) fluorescence lifetime measurements under different wavelengths bands, separated via a series of longpass dichroics at 387nm, 409nm and 435nm. To achieve the minute scale of optomechanics, we employed a stereolithography based 3D printer with <50 μm resolution to create a custom designed optical mount in a hand-held form factor. We examined the characteristics of the 3D printed optical system with finite element modeling to simulate the effect of thermal (LED) and mechanical (handling) strain on the optical system. Using this device, the phase shift and demodulation of collagen types were measured, where the separate spectral bands enhanced the differentiation of their lifetimes.

  19. A hybrid method for inversion of 3D DC resistivity logging measurements.

    PubMed

    Gajda-Zagórska, Ewa; Schaefer, Robert; Smołka, Maciej; Paszyński, Maciej; Pardo, David

    This paper focuses on the application of hp hierarchic genetic strategy (hp-HGS) for solution of a challenging problem, the inversion of 3D direct current (DC) resistivity logging measurements. The problem under consideration has been formulated as the global optimization one, for which the objective function (misfit between computed and reference data) exhibits multiple minima. In this paper, we consider the extension of the hp-HGS strategy, namely we couple the hp-HGS algorithm with a gradient based optimization method for a local search. Forward simulations are performed with a self-adaptive hp finite element method, hp-FEM. The computational cost of misfit evaluation by hp-FEM depends strongly on the assumed accuracy. This accuracy is adapted to the tree of populations generated by the hp-HGS algorithm, which makes the global phase significantly cheaper. Moreover, tree structure of demes as well as branch reduction and conditional sprouting mechanism reduces the number of expensive local searches up to the number of minima to be recognized. The common (direct and inverse) accuracy control, crucial for the hp-HGS efficiency, has been motivated by precise mathematical considerations. Numerical results demonstrate the suitability of the proposed method for the inversion of 3D DC resistivity logging measurements.

  20. [Application of PARAFAC method and 3-D fluorescence spectra in petroleum pollutant measurement and analysis].

    PubMed

    Pan, Zhao; Wang, Yu-tian; Shao, Xiao-qing; Wu, Xi-jun; Yang, Li-li

    2012-03-01

    A method for identification and concentration measurement of petroleum pollutant by combining three-dimensional (3-D) fluorescence spectra with parallel factor analysis (PARAFAC) was proposed. The main emphasis of research was the measurement of coexisting different kinds of petroleum. The CCl4 solutions of a 0# diesel sample, a 97# gasoline sample, and a kerosene sample were used as measurement objects. The condition of multiple petroleum coexistence was simulated by petroleum solutions with different mixed ratios. The character of PARAFAC in complex mixture coexisting system analysis was studied. The spectra of three kinds of solutions and the spectra of gasoline-diesel mixed samples, diesel-kerosene mixed samples, and gas oline-diesel mixed with small counts of kerosene interference samples were analyzed respectively. The core consistency diagnostic method and residual sum of squares method were applied to calculate the number of factors in PARAFAC. In gasoline-diesel experiment, gasoline or diesel can be identified and measured as a whole respectively by 2-factors parallel factors analysis. In diesel-kerosene experiment, 2-factors parallel factors analysis can only obtain the characters of diesel, and the 3rd factor is needed to separate the kerosene spectral character from the mixture spectrum. When small counts of kerosene exist in gasoline-diesel solution, gasoline and diesel still can be identified and measured as principal components by a 2-factors parallel factor analysis, and the effect of interference on qualitative analysis is not significant. The experiment verified that the PARAFAC method can obtain characteristic spectrum of each kind of petroleum, and the concentration of petroleum in solutions can be predicted simultaneously, with recoveries shown in the paper. The results showed the possibility of petroleum pollutant identification and concentration measurement based on the 3-D fluorescence spectra and PARAFAC.

  1. Fabrication of 3D lawn-shaped N-doped porous carbon matrix/polyaniline nanocomposite as the electrode material for supercapacitors

    NASA Astrophysics Data System (ADS)

    Zhang, Xiuling; Ma, Li; Gan, Mengyu; Fu, Gang; Jin, Meng; Lei, Yao; Yang, Peishu; Yan, Maofa

    2017-02-01

    A facile approach to acquire electrode materials with prominent electrochemical property is pivotal to the progress of supercapacitors. 3D nitrogen-doped porous carbon matrix (PCM), with high specific surface area (SSA) up to 2720 m2 g-1, was obtained from the carbonization and activation of the nitrogen-enriched composite precursor (graphene/polyaniline). Then 3D lawn-shaped PCM/PANI composite was obtained by the simple in-situ polymerization. The morphology and structure of these resulting composites were characterized by combining SEM and TEM measurements, Fourier transform infrared spectroscopy (FT-IR), X-ray diffraction (XRD) spectroscopy analyses and Raman spectroscope. The element content of all samples was evaluated using CHN analysis. The results of electrochemical testing indicated that the PCM/PANI composite displays a higher capacitance value of 527 F g-1 at 1 A g-1 compared to 338 F g-1 for pure PANI, and exhibits appreciable rate capability with a retention of 76% at 20 A g-1 as well as fine long-term cycling performance (with 88% retention of specific capacitance after 1000 cycles at 10 A g-1). Simultaneously, the excellent capacitance performance coupled with the facile synthesis of PCM/PANI indicates it is a promising electrode material for supercapacitors.

  2. 3D measurements in the polar mesosphere using coherent radar imaging

    NASA Astrophysics Data System (ADS)

    Zecha, M.; Sommer, S.; Rapp, M.; Stober, G.; Latteck, R.

    2012-12-01

    Radars provide the opportunity of continuous measurements in the interesting area of the polar mesosphere. Usually the spatial resolution of measurements by pulsed VHF radars is limited by the radar beam width, transmitting pulse length, and sampling time. Due to these technical restrictions the typical small-scale structures in the mesosphere often cannot be resolved. Furthermore the quality of the estimation of dynamic atmosphere parameters is reduced if the position and direction of scatter returns cannot determined exactly. Radar interferometry methods have been developed to reduce these limitations. The coherent radar imaging method gives a high resolving image of the scatter structure insight the radar beam volume. In recent years the VHF radar MAARSY was installed in Andenes/Norway (69°N). This new radar was designed to allow improved three-dimensional observations in the atmosphere. It consists of 433 Yagis and allows a minimum beam width of about 4 degree. The beam direction can be changed pulse-by-pulse freely in azimuth angle and practicable up to 40 degree in zenith angle. The pulse length can be varied from a couple of km down to 50 m. Up to 16 receiving channels of spaced antennas can be used. In this presentation we show the detection of the angles-of-arrival of radar echoes and the correction of the wind measurements. We demonstrate the improvement of measurement results by using coherent radar imaging. The differences to the results of conventional methods depend on the beam width, range resolution, antenna distances, and beam tilting. We show that the application of interferometry is necessary to improve considerably the quality of 3D-measurement results. Furthermore we demonstrate the synthesis of high resolved images to get a real 3D image of the mesosphere.

  3. 3D measurement with active triangulation for spectacle lens optimization and individualization

    NASA Astrophysics Data System (ADS)

    Gehrmann, Julia; Tiemann, Markus; Seitz, Peter C.

    2015-05-01

    We present for the first time an active triangulation technique for video centration. This technique requires less manual selection than current methods and thus enables faster measurements while providing the same resolution. The suitability to measure physiological parameters is demonstrated in a measurement series. The active triangulation technique uses a laser line for illumination which is positioned such that it intersects with the pupils of the subject to be measured. For the illumination of human eyes, the wavelength and output power were carefully investigated to ensure photobiological safety at all times and reduce irritation of the subject being measured. A camera with a known orientation to the laser line images the subject. Physiological features on the subject and the frame are then selected in the acquired image yielding directly a 3D position if lying on the illuminated laser line. Distances to points off the laser line can be estimated from a scaling at the same depth. Focus is on two parameters: interpupillary distance (PD) and corneal face form angle (FFA). In our study we examined the repeatability of the measurements. We found an excellent repeatability with small deviations to the reference value. Furthermore a physiological study was carried out with the setup showing the applicability of this method for video centration measurements. A comparison to a reference measurement system shows only small differences.

  4. 3-D surface profilometry based on modulation measurement by applying wavelet transform method

    NASA Astrophysics Data System (ADS)

    Zhong, Min; Chen, Feng; Xiao, Chao; Wei, Yongchao

    2017-01-01

    A new analysis of 3-D surface profilometry based on modulation measurement technique by the application of Wavelet Transform method is proposed. As a tool excelling for its multi-resolution and localization in the time and frequency domains, Wavelet Transform method with good localized time-frequency analysis ability and effective de-noizing capacity can extract the modulation distribution more accurately than Fourier Transform method. Especially for the analysis of complex object, more details of the measured object can be well remained. In this paper, the theoretical derivation of Wavelet Transform method that obtains the modulation values from a captured fringe pattern is given. Both computer simulation and elementary experiment are used to show the validity of the proposed method by making a comparison with the results of Fourier Transform method. The results show that the Wavelet Transform method has a better performance than the Fourier Transform method in modulation values retrieval.

  5. 3D measurement and camera attitude estimation method based on trifocal tensor

    NASA Astrophysics Data System (ADS)

    Chen, Shengyi; Liu, Haibo; Yao, Linshen; Yu, Qifeng

    2016-11-01

    To simultaneously perform 3D measurement and camera attitude estimation, an efficient and robust method based on trifocal tensor is proposed in this paper, which only employs the intrinsic parameters and positions of three cameras. The initial trifocal tensor is obtained by using heteroscedastic errors-in-variables (HEIV) estimator and the initial relative poses of the three cameras is acquired by decomposing the tensor. Further the initial attitude of the cameras is obtained with knowledge of the three cameras' positions. Then the camera attitude and the interested points' image positions are optimized according to the constraint of trifocal tensor with the HEIV method. Finally the spatial positions of the points are obtained by using intersection measurement method. Both simulation and real image experiment results suggest that the proposed method achieves the same precision of the Bundle Adjustment (BA) method but be more efficient.

  6. Uncertainty studies of topographical measurements on steel surface corrosion by 3D scanning electron microscopy.

    PubMed

    Kang, K W; Pereda, M D; Canafoglia, M E; Bilmes, P; Llorente, C; Bonetto, R

    2012-02-01

    Pitting corrosion is a damage mechanism quite serious and dangerous in both carbon steel boiler tubes for power plants which are vital to most industries and stainless steels for orthopedic human implants whose demand, due to the increase of life expectation and rate of traffic accidents, has sharply increased. Reliable methods to characterize this kind of damage are becoming increasingly necessary, when trying to evaluate the advance of damage and to establish the best procedures for component inspection in order to determine remaining lives and failure mitigation. A study about the uncertainties on the topographies of corrosion pits from 3D SEM images, obtained at low magnifications (where errors are greater) and different stage tilt angles were carried out using an in-house software previously developed. Additionally, measurements of pit depths on biomaterial surfaces, subjected to two different surface treatments on stainless steels, were carried out. The different depth distributions observed were in agreement with electrochemical measurements.

  7. Quantification of spatial structure of human proximal tibial bone biopsies using 3D measures of complexity

    NASA Astrophysics Data System (ADS)

    Saparin, Peter I.; Skovhus Thomsen, Jesper; Prohaska, Steffen; Zaikin, Alexei; Kurths, Jürgen; Hege, Hans-Christian; Gowin, Wolfgang

    2005-05-01

    Changes in trabecular bone composition during development of osteoporosis are used as a model for bone loss in microgravity conditions during a space flight. Symbolic dynamics and measures of complexity are proposed and applied to assess quantitatively the structural composition of bone tissue from 3D data sets of human tibia bone biopsies acquired by a micro-CT scanner. In order to justify the newly proposed approach, the measures of complexity of the bone architecture were compared with the results of traditional 2D bone histomorphometry. The proposed technique is able to quantify the structural loss of the bone tissue and may help to diagnose and to monitor changes in bone structure of patients on Earth as well as of the space-flying personnel.

  8. Characterization of emissions from a desktop 3D printer and indoor air measurements in office settings.

    PubMed

    Steinle, Patrick

    2016-01-01

    Emissions from a desktop 3D printer based on fused deposition modeling (FDM) technology were measured in a test chamber and indoor air was monitored in office settings. Ultrafine aerosol (UFA) emissions were higher while printing a standard object with polylactic acid (PLA) than with acrylonitrile butadiene styrene (ABS) polymer (2.1 × 10(9) vs. 2.4 × 10(8) particles/min). Prolonged use of the printer led to higher emission rates (factor 2 with PLA and 4 with ABS, measured after seven months of occasional use). UFA consisted mainly of volatile droplets, and some small (100-300 nm diameter) iron containing and soot-like particles were found. Emissions of inhalable and respirable dust were below the limit of detection (LOD) when measured gravimetrically, and only slightly higher than background when measured with an aerosol spectrometer. Emissions of volatile organic compounds (VOC) were in the range of 10 µg/min. Styrene accounted for more than 50% of total VOC emitted when printing with ABS; for PLA, methyl methacrylate (MMA, 37% of TVOC) was detected as the predominant compound. Two polycyclic aromatic hydrocarbons (PAH), fluoranthene and pyrene, were observed in very low amounts. All other analyzed PAH, as well as inorganic gases and metal emissions except iron (Fe) and zinc (Zn), were below the LOD or did not differ from background without printing. A single 3D print (165 min) in a large, well-ventilated office did not significantly increase the UFA and VOC concentrations, whereas these were readily detectable in a small, unventilated room, with UFA concentrations increasing by 2,000 particles/cm(3) and MMA reaching a peak of 21 µg/m(3) and still being detectable in the room even 20 hr after printing.

  9. 3D-ANTLERS: Virtual Reconstruction and Three-Dimensional Measurement

    NASA Astrophysics Data System (ADS)

    Barba, S.; Fiorillo, F.; De Feo, E.

    2013-02-01

    The main objective of this paper is to establish a procedural method for measuring and cataloguing antlers through the use of laser scanner and of a 3D reconstruction of complex modeling. The deer's antlers have been used as a test and subjected to capture and measurement. For this purpose multiple data sources techniques have been studied and compared, (also considering low-cost sensors) estimating the accuracy and its errors in order to demonstrate the validity of the process. A further development is the comparison of results with applications of digital photogrammetry, considering also cloud computing software. The study has began with an introduction to sensors, addressing the underlying characteristics of the technology available, the scope and the limits of these applications. We have focused particularly on the "structured light", as the acquisition will be completed through three-dimensional scanners: DAVID and the ARTEC MH. The first is a low-cost sensor, a basic webcam and a linear laser pointer, red coloured, that leads to acquisition of three-dimensional strips. The other one is a hand scanner; even in this case we will explain how to represent a 3D model, with a pipeline that provides data export from the "proprietary" to a "reverse engineering" software. Typically, these are the common steps to the two approaches that have been performed in WRAP format: point sampling, manual and global registration, repair normals, surface editing and texture projection. In fact, after a first and common data processing was done with the use of a software supplied with the equipment, the proto-models thus obtained were treated in Geomagic Studio, which was also chosen to allow the homogenization and standardization of data in order to make a more objective comparison. It is commonplace to observe that the editing of the digital mock-up obtained with the DAVID - which had not yet been upgraded to the 3.5 release at the time of this study - is substantially different