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Sample records for 30s ri beam

  1. Riken RI Beam Factory, Harvest Time

    NASA Astrophysics Data System (ADS)

    En'yo, H.

    2015-06-01

    At RIKEN RI Beam Factory (RIBF), having all the experimental facilities in place, the uranium-beam intensity recorded 25pnA in 2014. With use of this powerful beam many experiments are begin performed by variety of researchers from all over the world, producing a lot of new data which were just a dream in several years ago. Recent status of RIKEN RI Beam Factory (RIBF) is presented with future prospects in science and an accelerator plan.

  2. {sup 30}S Beam Development and X-ray Bursts

    SciTech Connect

    Kahl, D.; Kubono, S.; Binh, D. N.; Hashimoto, T.; Hayakawa, S.; Kurihara, Y.; Ohshiro, Y.; Yamaguchi, H.; Chen, A. A.; Chen, J.; Setoodeh nia, K.; Kaji, D.; Nishimura, S.; Kim, A.; Lee, N. H.; Wakabayashi, Y.

    2010-03-01

    Over the past three years, we have worked on developing a well-characterized {sup 30}S radioactive beam to be used in a future experiment aiming to directly measure to extrapolate the {sup 30}S(alpha,p) stellar reaction rate within the Gamow window of Type I X-ray bursts. The importance of the {sup 30}S(alpha,p) reaction to X-ray bursts is discussed. Given the astrophysical motivation, the successful results of and challenges involved in the production of a low-energy {sup 30}S beam are detailed. Finally, an overview of our future plans regarding this on-going project are presented.

  3. Construction of rare-RI ring at RIKEN RI Beam Factory

    NASA Astrophysics Data System (ADS)

    Yamaguchi, Y.; Wakasugi, M.; Uesaka, T.; Ozawa, A.; Abe, Y.; Fujinawa, T.; Kase, M.; Komiyama, M.; Kubo, T.; Kumagai, K.; Maie, T.; Nagae, D.; Ohnishi, J.; Suzaki, F.; Tokuchi, A.; Watanabe, Y.; Yoshida, K.; Yamada, K.; Yamaguchi, T.; Yamasawa, H.; Yanagisawa, Y.; Zenihiro, J.; Yano, Y.

    2013-12-01

    An isochronous mass spectroscopy system using a newly constructed storage ring named the “rare-RI ring” is expected to be implemented at the RIKEN Nishina Center to determine the masses of short-lived rare nuclei including those in the r-process region with a relative precision of the order of 10-6 even for only one particle. In an isochronous storage ring, the mass is determined by measuring the revolution time of each nucleus. Our rare-RI ring consists of six magnetic sectors, and each sector consists of four bending magnets. To precisely optimize the isochronous conditions of the circulating particles for large acceptance, we install ten trim coils to half of the bending magnets. A fast-response and fast-charging kicker system enables selective and efficient injection of the produced rare nuclei into the ring one by one, along with facilitating efficient extraction of the circulating particles for time-of-flight measurement. Construction of the rare-RI ring was begun in the middle of the fiscal year 2012 at the RIKEN RI Beam Factory, and the ring is expected to be fully functional by 2015.

  4. Spin-Isospin responses via charge exchange reactions of RI beams at SHARAQ

    SciTech Connect

    Shimoura, Susumu

    2012-11-12

    Nuclear spectroscopy via direct reactions of RI beams is discussed focusing on characteristics of charge-exchange reactions of RI beams. Recent experiments using the SHARAQ spectrometer at the RIBF are presented, where isovector spin monopole and spin-non-flip monopole responses are studied by charge exchange reaction of RI beams. Some experimental plans and perspectives are also presented.

  5. Study on astrophysical reactions using low-energy RI beams

    NASA Astrophysics Data System (ADS)

    Yamaguchi, Hidetoshi

    2009-10-01

    In recent years, low-energy RI beams can be produced in a good intensity and they have been used for studying many astrophysical reactions. One of the facilities producing low-energy RI beams is CRIB (CNS Radio-Isotope Beam separator) [1,2], an RI-beam separator of Center for Nuclear Study, University of Tokyo. Taking CRIB as an example, recent improvements on the RI-beam production and experimental results on astrophysical studies are presented. Several experimental approaches have been taken for the studies on astrophysical reactions.The feature of each method are discussed based on real measurements performed at CRIB. One is the direct method, applied for measurements of reactions such as (α,p) [3]. Another is the measurement of proton/alpha resonance scattering using the thick target method in inverse kinematics, by which we can obtain information on the resonances relevant in astrophysical reactions [4,5]. A recent fruitful result was from a measurement of proton resonance scattering using a ^7Be beam [5]. The energy level structure of ^8B, revealed by the experiment, is especially of interest as it is related with the ^7Be(p,γ) ^8B reaction, responsible for the production of ^8B neutrinos in the sun. We successfully determined parameters of resonances in ^8B below 6.7 MeV, which may affect the ^7Be(p,γ)^8B reaction rate at the solar temparature. Indirect methods, such as ANC and the Trojan Horse Method, were also used in some of the measurements.[4pt] [1] S. Kubono et al., Eur. Phys. J. A13 (2002) 217.[0pt] [2] Y. Yanagisawa et al., Nucl. Instrum. Meth. Phys. Res., Sect. A 539 (2005) 74.[0pt] [3] M. Notani et al., Nucl. Phys. A 764 (2004) 113c.[0pt] [4] T. Teranishi et al., Phys. Lett. B 650 (2007) 129.[0pt] [5] H. Yamaguchi et al., Phys. Lett. B 672 (2009) 230.

  6. Radiation protection system at the RIKEN RI beam factory.

    PubMed

    Uwamino, Y; Fujita, S; Sakamoto, H; Ito, S; Fukunishi, N; Yabutani, T; Yamano, T; Fukumura, A

    2005-01-01

    The RIKEN RI (radioactive isotope) Beam Factory is scheduled to commence operations in 2006, and its maximum energy will be 400 MeV u(-1) for ions lighter than Ar and 350 MeV u(-1) for uranium. The beam intensity will be 1 pmicroA (6 x 10(12) particles s(-1)) for any element at the goal. For the hands-on-maintenance and the rational shield thickness of the building, the beam loss must be controlled with several kinds of monitors. Three types of radiation monitors will be installed. The first one consists of a neutron dose equivalent monitor and an ionisation chamber, which are commercially available area monitors. The second one is a conventional hand-held dose equivalent monitor wherein the logarithmic signal is read by a programmable logic controller based on the radiation safety interlock system (HIS). The third one is a simple plastic scintillator called a beam loss monitor. All the monitors have threshold levels for alarm and beam stop, and HIS reads all these signals.

  7. Nuclear Astrophysics and Structure Studies Using Low-energy RI Beams at CRIB

    SciTech Connect

    Yamaguchi, H.; Hashimoto, T.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kubono, S.

    2010-05-12

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Using the RI beams at CRIB, Many measurements on proton and alpha resonance scatterings, (alpha,p) reactions, and others were peformed in recent years, mainly for studying astrophysical reactions and exotic nuclear structure. Among them, the results on the {sup 7}Be+p and {sup 7}Li+alpha resonance scatterings are presented.

  8. Experimental studies using a low-energy RI beam separator at CNS

    NASA Astrophysics Data System (ADS)

    Teranishi, T.; Kubono, S.; Shimoura, S.; Notani, M.; Yanagisawa, Y.; Michimasa, S.; Ue, K.; Iwasaki, H.; Kurokawa, M.; Satou, Y.; Morikawa, T.; Saito, A.; Baba, H.; Lee, J. H.; Lee, C. S.; Fülöp, Zs.; Kato, S.

    2003-05-01

    Radioactive-ion (RI) beams of 10C, 14O, 12N and 11C with energies low 10 A MeV were produced by using a low-energy in-flight RI beam separator newly constructed by CNS, University of Tokyo. Using the 12N and 11C beams, some resonance states were identified in the proton elastic scattering 12N+p and 11C+p, respectively.

  9. Nuclear Astrophysics and Structure Studies Using Low-energy RI Beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Hashimoto, T.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kubono, S.

    2010-05-01

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Using the RI beams at CRIB, Many measurements on proton and alpha resonance scatterings, (α,p) reactions, and others were peformed in recent years, mainly for studying astrophysical reactions and exotic nuclear structure. Among them, the results on the 7Be+p and 7Li+α resonance scatterings are presented.

  10. Nuclear clusters studied with alpha resonant scatterings using RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Nakao, T.; Wakabayashi, Y.; Hashimoto, T.; Hayakawa, S.; Kawabata, T.; Teranishi, T.; Kwon, Y. K.; Binh, D. N.; Khiem, L. H.; Duy, N. N.; Kubono, S.; Suhara, T.; Kanada-En'yo, Y.; Moon, J. Y.; Kim, A.; Iwasa, N.; Lee, P. S.; Chae, K. Y.; Cha, S. M.; Gwak, M. S.; Kim, D. H.; Milman, E.

    2014-12-01

    Alpha resonant scattering is a simple and promising method to study α-cluster structure in nuclei. It has several good features which enable us to perform measurements with short-lived and relatively low-intense RI beams. Several measurements on alpha resonant scattering have been carried out at CRIB (CNS Radioactive Ion Beam separator), which is a low-energy RI beam separator at Center for Nuclear Study (CNS) of the University of Tokyo. Recent α resonant scattering studies at CRIB, using 7Li, 7Be and 10Be beams with a helium gas target, are discussed.

  11. Alpha-induced reaction studies using low-energy RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Hu, J.; Kubono, S.; Hayakawa, S.; Hashimoto, T.

    2012-11-01

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Studies on proton and alpha resonance scatterings, (α, p) reactions, and other types of measurements (β-decay lifetimes etc.) have been performed using RI beams at CRIB, motivated by interests on astrophysical reactions and exotic nuclear structure. Among the studies at CRIB, the measurement of 7Li+α/7Be+α resonant scatterings are presented.

  12. Alpha-induced reaction studies using low-energy RI beams at CRIB

    SciTech Connect

    Yamaguchi, H.; Kahl, D.; Hu, J.; Kubono, S.; Hayakawa, S.; Hashimoto, T.

    2012-11-12

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo. Studies on proton and alpha resonance scatterings, ({alpha}, p) reactions, and other types of measurements ({beta}-decay lifetimes etc.) have been performed using RI beams at CRIB, motivated by interests on astrophysical reactions and exotic nuclear structure. Among the studies at CRIB, the measurement of {sup 7}Li+{alpha}/{sup 7}Be+{alpha} resonant scatterings are presented.

  13. Studies on Nuclear Astrophysics and Exotic Structure at the Low-Energy RI Beam Facility CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Hayakawa, S.; Sakaguchi, Y.; Nakao, T.; Wakabayashi, Y.; Hashimoto, T.; Teranishi, T.; Kubono, S.; Cherubini, S.; Mazzocco, M.; Signorini, C.; Gulino, M.; Di Pietro, A.; Figuera, P.; La Cognata, M.; Lattuada, M.; Spitaleri, C.; Torresi, D.; Lee, P. S.; Lee, C. S.; Komatsubara, T.; Iwasa, N.; Okoda, Y.; Pierroutsakou, D.; Parascandolo, C.; La Commara, M.; Strano, E.; Boiano, C.; Boiano, A.; Manea, C.; Sánchez-Benítez, A. M.; Miyatake, H.; Watanabe, Y. X.; Ishiyama, H.; Jeong, S. C.; Imai, N.; Hirayama, Y.; Kimura, S.; Mukai, M.; Kim, Y. H.; Lin, C. J.; Jia, H. M.; Yan, L.; Yang, Y. Y.; Kawabata, T.; Kwon, Y. K.; Binh, D. N.; Khiem, L. H.; Duy, N. N.

    Studies on nuclear astrophysics, resonant structure, and nuclear reaction are going on at CRIB (CNS Radioactive Ion Beam separator), a low-energy RI beam separator operated by Center for Nuclear Study (CNS), the University of Tokyo. Two major methods used at CRIB to study nuclear reactions of astrophysical relevance are the resonant scattering, and direct measurements of (α,p) reactions using a thick-gas target. Several experiments for decay measurements and reaction mechanism are also performed using low-energy RI beams at CRIB. Some of the results from recent experiments at CRIB are discussed.

  14. Cryogenic gas target system for intense RI beam productions in nuclear astrophysics

    SciTech Connect

    Wakabayashi, Y.; Yamaguchi, H.; Hayakawa, S.; Kurihara, Y.; Amadio, G.; Fujikawa, H.; Kubono, S.; Binh, D. N.; He, J. J.; Kim, A.

    2008-05-21

    A cryogenic gas target system was newly developed to produce intense RI beams at the low-energy in-flight radio-isotope beam separator (CRIB) of the University of Tokyo. The main features of the cryogenic gas target system are the direct cooling of the target cell by a liquid N{sub 2} finger and the circulation of the target gas that goes through the liquid N{sub 2} tank. Hydrogen gas was cooled down to 85-90 K by liquid nitrogen and used as a secondary beam production target which has a thickness of 2.3 mg/cm{sup 2} at the gas pressure of 760 Torr. Intense RI beams, such as a {sup 7}Be beam of 2x10{sup 8} particles per second, were successfully produced using the target.

  15. Restoration of RI-beams from a projectile fragment separator by Laser Ionization gas Catcher-PALIS-

    SciTech Connect

    Sonoda, T.; Takamine, A.; Schury, P.; Yamazaki, Y.; Wada, M.; Okada, K.; Yoshida, A.; Kubo, T.; Matsuo, Y.; Furukawa, T.; Wakui, T.; Shinozuka, T.; Iimura, H.; Katayama, I.; Ohtani, S.; Wollnik, H.; Schuessler, H. A.; Kudryavtsev, Yu.; Van Duppen, P.; Huyse, M.

    2009-03-17

    A fragment separator at heavy ion accelerator facilities is a versatile instrument to provide wide variety of radioactive isotope (RI) beams. However, more than 99.99% of precious RI-ions are simply dumped in the slits or elsewhere in the fragment separator. A novel concept to restore such RI-ions for parasitic slow RI-beams is proposed. Installation of a laser ionization gas catcher in the vicinity of the first or second focal point of the fragment separator enables to collect dead isotopes in the slits. The design concept and expected performance are discussed.

  16. Nuclear Astrophysical studies using low-energy RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Wakabayashi, Y.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kurihara, Y.; Kubono, S.; Teranishi, T.; He, J. J.; Kwon, Y. K.; Nishimura, S.; Togano, Y.; Iwasa, N.; Niikura, M.; Khiem, L. H.

    2009-05-01

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo, used for various studies covering nuclear-astrophysical topics. An application of the RI beam at CRIB for the astrophysical studies is a new measurement of the proton resonance scattering on 7Be. The measurement was performed up to the excitation energy of 6.8 MeV, ans the excitation function above 3.5 MeV was successfully measured for the first time, providing important information about the reaction rate of 7Be(p,γ)8B, which is the key reaction in the solar 8B neutrino production. A preliminary result of the 7Be+p experiment is presented.

  17. Nuclear Astrophysical studies using low-energy RI beams at CRIB

    SciTech Connect

    Yamaguchi, H.; Wakabayashi, Y.; Hayakawa, S.; Binh, D. N.; Kahl, D.; Kurihara, Y.; Kubono, S.; Niikura, M.; Teranishi, T.; He, J. J.; Kwon, Y. K.; Nishimura, S.; Togano, Y.; Iwasa, N.; Khiem, L. H.

    2009-05-04

    CRIB (CNS Radioactive Ion Beam separator) is a low-energy RI beam separator at the Center for Nuclear Study (CNS) of the University of Tokyo, used for various studies covering nuclear-astrophysical topics. An application of the RI beam at CRIB for the astrophysical studies is a new measurement of the proton resonance scattering on {sup 7}Be. The measurement was performed up to the excitation energy of 6.8 MeV, ans the excitation function above 3.5 MeV was successfully measured for the first time, providing important information about the reaction rate of {sup 7}Be(p,{gamma}){sup 8}B, which is the key reaction in the solar {sup 8}B neutrino production. A preliminary result of the {sup 7}Be+p experiment is presented.

  18. Studying astrophysical reactions with low-energy RI beams at CRIB

    NASA Astrophysics Data System (ADS)

    Yamaguchi, H.; Kahl, D.; Hayakawa, S.; Sakaguchi, Y.; Wakabayashi, Y.; Hashimoto, T.; Cherubini, S.; Gulino, M.; Spitaleri, C.; Rapisarda, G. G.; La Cognata, M.; Lamia, L.; Romano, S.; Kubono, S.; Iwasa, N.; Teranishi, T.; Kawabata, T.; Kwon, Y. K.; Binh, D. N.; Khiem, L. H.; Duy, N. N.; Kato, S.; Komatsubara, T.; Coc, A.; De Sereville, N.; Hammache, F.; Kiss, G.; Bishop, S.

    2016-05-01

    Studies on nuclear astrophysics, nuclear structure, and other interests have been performed using the radioactive-isotope (RI) beams at the low-energy RI beam separator CRIB, operated by Center for Nuclear Study (CNS), the University of Tokyo. A typical measurement performed at CRIB is the elastic resonant scattering with the inverse kinematics. One recent experiment was on the α resonant scattering with 7Li and 7Be beams. This study is related to the astrophysical 7Li/7Be(α,γ) reactions, important at hot p-p chain and νp-process in supernovae. There have also been measurements based on other experimental methods. The first THM measurement using an RI beam has been performed at CRIB, to study the 18F(p, α)15O reaction at astrophysical energies via the three body reaction 2H(18F, α15O)n. The 18F(p, α) 15O reaction rate is crucial to understand the 511-keV γ-ray production in nova explosion phenomena, and we successfully evaluated the reaction cross section at novae temperature and below experimentally for the first time.

  19. Nuclear Astrophysics Programs with Low-Energy RI Beams at CRIB

    SciTech Connect

    Kubono, S.; Binh, Dam N.; Hayakawa, S.; Hashimoto, T.; Kahl, D. M.; Yamaguchi, H.; Wakabayashi, Y.; Teranishi, T.; Iwasa, N.; Komatsubara, T.; Kato, S.; Khiem, Le H.

    2010-04-30

    Nuclear astrophysics activities with CNS RI beam separator (CRIB) are reported together with the present status of the CRIB facility which is supported by the AVF upgrade project for the total development of the low-energy RIB facility. The activities include direct and indirect measurements of stellar reactions especially relevant to explosive burning processes such as nova and supernovae. Some recent results are discussed together with a scope of the facility.

  20. Nuclear Astrophysics Programs with Low-Energy RI Beams at CRIB

    NASA Astrophysics Data System (ADS)

    Kubono, S.; Binh, Dam N.; Hayakawa, S.; Hashimoto, T.; Kahl, D. M.; Yamaguchi, H.; Wakabayashi, Y.; Teranishi, T.; Iwasa, N.; Komatsubara, T.; Kato, S.; Khiem, Le H.

    2010-04-01

    Nuclear astrophysics activities with CNS RI beam separator (CRIB) are reported together with the present status of the CRIB facility which is supported by the AVF upgrade project for the total development of the low-energy RIB facility. The activities include direct and indirect measurements of stellar reactions especially relevant to explosive burning processes such as nova and supernovae. Some recent results are discussed together with a scope of the facility.

  1. Experimental Approach to High-Temperature Stellar Reactions with Low-Energy RI Beams

    NASA Astrophysics Data System (ADS)

    Kubono, S.; Yamaguchi, H.; Amadio, G.; Hayakawa, S.; Wakabayashi, Y.; Kurihara, Y.; He, J. J.; Saito, A.; Fujikawa, H.; Khiem, Le Hong; Niikura, M.; Teranishi, T.; Nishimura, S.; Kato, S.; Lee, C. S.; Kwon, Y. K.; Hahn, I. S.; Kim, A.

    2008-04-01

    The experimental efforts for the stellar reactions under high-temperature and high densities have been made as the major program using the RI beams from the CNS low-energy in-flight RI beam separator (CRIB) of University of Tokyo, in order to understand the evolution of the universe as well as various stellar phenomena. Specifically, two subjects of hydrogen burning are discussed here. One is a reaction study of the pp-chain and the second is of the explosive hydrogen burning, the rp-process. Some s-wave resonances have been identified by the thick target method in the crucial reaction processes in the hydrogen burning. The resonant scattering with the thick target method also succeeded in identifying inelastic resonant scattering, giving proton widths for the first excited state of the target nucleus. This provides very efficiently the reaction rate estimate for the process under high-temperature equilibrium condition. Possibilities of the CRIB facility in near future are also briefly discussed.

  2. A gas circulation and purification system for gas-cell-based low-energy RI-beam production.

    PubMed

    Sonoda, T; Tsubota, T; Wada, M; Katayama, I; Kojima, T M; Reponen, M

    2016-06-01

    A gas circulation and purification system was developed at the RIKEN Radioactive Isotope Beam Factory that can be used for gas-cell-based low-energy RI-beam production. A high-flow-rate gas cell filled with one atmosphere of buffer gas (argon or helium) is used for the deceleration and thermalization of high-energy RI-beams. The exhausted buffer gas is efficiently collected using a compact dry pump and returned to the gas cell with a recovery efficiency of >97%. The buffer gas is efficiently purified using two gas purifiers as well as collision cleaning, which eliminates impurities in the gas. An impurity level of one part per billion is achieved with this method. PMID:27370494

  3. A gas circulation and purification system for gas-cell-based low-energy RI-beam production

    NASA Astrophysics Data System (ADS)

    Sonoda, T.; Tsubota, T.; Wada, M.; Katayama, I.; Kojima, T. M.; Reponen, M.

    2016-06-01

    A gas circulation and purification system was developed at the RIKEN Radioactive Isotope Beam Factory that can be used for gas-cell-based low-energy RI-beam production. A high-flow-rate gas cell filled with one atmosphere of buffer gas (argon or helium) is used for the deceleration and thermalization of high-energy RI-beams. The exhausted buffer gas is efficiently collected using a compact dry pump and returned to the gas cell with a recovery efficiency of >97%. The buffer gas is efficiently purified using two gas purifiers as well as collision cleaning, which eliminates impurities in the gas. An impurity level of one part per billion is achieved with this method.

  4. First test experiment to produce the slowed-down RI beam with the momentum-compression mode at RIBF

    NASA Astrophysics Data System (ADS)

    Sumikama, T.; Ahn, D. S.; Fukuda, N.; Inabe, N.; Kubo, T.; Shimizu, Y.; Suzuki, H.; Takeda, H.; Aoi, N.; Beaumel, D.; Hasegawa, K.; Ideguchi, E.; Imai, N.; Kobayashi, T.; Matsushita, M.; Michimasa, S.; Otsu, H.; Shimoura, S.; Teranishi, T.

    2016-06-01

    The 82Ge beam has been produced by the in-flight fission reaction of the 238U primary beam with 345 MeV/u at the RIKEN RI beam factory, and slowed down to about 15 MeV/u using the energy degraders. The momentum-compression mode was applied to the second stage of the BigRIPS separator to reduce the momentum spread. The energy was successfully reduced down to 13 ± 2.5 MeV/u as expected. The focus was not optimized at the end of the second stage, therefore the beam size was larger than the expectation. The transmission of the second stage was half of the simulated value mainly due to out of focus. The two-stage separation worked very well for the slowed-down beam with the momentum-compression mode.

  5. Low-energy RI beam technology and nuclear clusters in the explosive pp-chain breakout process

    SciTech Connect

    Kubono, S.; Yamaguchi, H.; Kahl, D. M.; Ohshiro, Y.; Watanabe, S.; Yamazaki, N.; Teranishi, T.; Yanagisawa, Y.; Wakabayashi, Y.; Kase, M.; Hayakawa, S.; Kwon, Y. K.; Hashimoto, T.; Fukuda, Y.; He, J. J.; Goto, A.; Muto, H.

    2014-05-09

    The lecture includes two parts: One is a discussion on the technology for developing RIB beam facility based on the in-flight method and relevant experimental technology. The second part is a discussion on experimental efforts for studying the breakout process from the pp-chain region based on recent works with low energy RI beams. The discussion of the second part specifically covers the problem of the vp-process in type II supernovae in terms of alpha cluster nature for the reactions.

  6. Universal Slow RI-Beam Facility at RIKEN RIBF for Laser Spectroscopy of Short-Lived Nuclei

    SciTech Connect

    Wada, M.; Takamine, A.; Okada, K.; Sonoda, T.; Schury, P.; Kanai, Y.; Kojima, T. M.; Lioubimov, V.; Yamazaki, Y.; Yoshida, A.; Kubo, T.; Iimura, H.; Katayama, I.; Ohtani, S.; Wollnik, H.; Schuessler, H. A.

    2009-03-17

    A universal slow RI-beam facility (SLOWRI) for precision atomic spectroscopy is being built at the RIKEN RI-beam factory. The facility will provide a wide variety of low-energy nuclear ions of all elements produced by projectile fragmentation of high-energy heavy-ion beams and thermalized by an RF-carpet ion guide. At prototype SLOWRI, radioactive Be isotope ions produced at 1 GeV were decelerated and cooled in an ion trap down to 1 {mu}eV by employing laser cooling. The ground state hyperfine structures of {sup 7}Be{sup +} and {sup 11}Be{sup +} were measured accurately by laser microwave double resonance spectroscopy. Measurements of the S{sub 1/2}{yields}P{sub 1/2}, P{sub 3/2} transition frequencies of {sup 7,9,10,11}Be{sup +} ions are also in progress aiming at the study of the nuclear charge radii. Other possible experiment at SLOWRI, such as mass spectroscopy, are also discussed.

  7. Production cross section measurements of radioactive isotopes by BigRIPS separator at RIKEN RI Beam Factory

    NASA Astrophysics Data System (ADS)

    Suzuki, H.; Kubo, T.; Fukuda, N.; Inabe, N.; Kameda, D.; Takeda, H.; Yoshida, K.; Kusaka, K.; Yanagisawa, Y.; Ohtake, M.; Sato, H.; Shimizu, Y.; Baba, H.; Kurokawa, M.; Ohnishi, T.; Tanaka, K.; Tarasov, O. B.; Bazin, D.; Morrissey, D. J.; Sherrill, B. M.; Ieki, K.; Murai, D.; Iwasa, N.; Chiba, A.; Ohkoda, Y.; Ideguchi, E.; Go, S.; Yokoyama, R.; Fujii, T.; Nishimura, D.; Nishibata, H.; Momota, S.; Lewitowicz, M.; DeFrance, G.; Celikovic, I.; Steiger, K.

    2013-12-01

    We have measured the production rates and production cross sections for a variety of radioactive isotopes which were produced from 124Xe, 48Ca, and 238U beams at an energy of 345 MeV/nucleon using the BigRIPS separator at the RIKEN Nishina Center RI Beam Factory (RIBF). Proton-rich isotopes with atomic numbers Z = 40-52 and neutron-rich isotopes with Z = 5-16 were produced by projectile fragmentation of the 124Xe and 48Ca beam on Be targets, respectively. Neutron-rich isotopes with Z = 20-59 were produced by in-flight fission of the 238U beam, in which both Be and Pb were used as production targets. The measured production rates and production cross sections were compared with those of the LISE++ calculations, and overall fairly good agreement has been obtained. Furthermore, in the measurements with the 124Xe beam, we have discovered four new isotopes on the proton-drip line, 85,86Ru and 81,82Mo, and obtained the clear evidence that 103Sb is particle unbound with an upper limit of 49 ns for the half-life. The measurements of projectile-fragment momentum distributions have been also performed with the 124Xe beam, in which the low-momentum tails of the distributions have been measured for the first time at the energy of 345 MeV/nucleon.

  8. Status of Beam Line Detectors for the BigRIPS Fragment Separator at RIKEN RI Beam Factory: Issues on High Rates and Resolution

    NASA Astrophysics Data System (ADS)

    Sato, Yuki; Fukuda, Naoki; Takeda, Hiroyuki; Kameda, Daisuke; Suzuki, Hiroshi; Shimizu, Yohei; Ahn, DeukSoon; Murai, Daichi; Inabe, Naohito; Shimaoka, Takehiro; Tsubota, Masakatsu; Kaneko, Junichi H.; Chayahara, Akiyoshi; Umezawa, Hitoshi; Shikata, Shinichi; Kumagai, Hidekazu; Murakami, Hiroyuki; Sato, Hiromi; Yoshida, Koichi; Kubo, Toshiyuki

    A multiple sampling ionization chamber (MUSIC) and parallel-plate avalanche counters (PPACs) were installed within the superconducting in-flight separator, named BigRIPS, at the RIKEN Nishina Center for particle identification of RI beams. The MUSIC detector showed negligible charge collection inefficiency from recombination of electrons and ions, up to a 99-kcps incidence rate for high-energy heavy ions. For the PPAC detectors, the electrical discharge durability for incident heavy ions was improved by changing the electrode material. Finally, we designed a single crystal diamond detector, which is under development for TOF measurements of high-energy heavy ions, that has a very fast response time (pulse width <1 ns).

  9. Low-energy nuclear reaction studies with RI beams in nuclear astrophysics

    NASA Astrophysics Data System (ADS)

    Kubono, S.; Teranishi, T.; Kato, S.

    2003-07-01

    After a brief discussion on the recent development in nuclear astrophysics, two reaction studies of typical astrophysical reactions at low energies where nuclear reactions play the main contributions to the nucleosynthesis in the universe, are discussed. One is the proton capture reaction, 11C(p, γ)12N, studied by the direct method using a 11C beam produced with a new low-energy RIB separator CRIB at CNS, Japan. The second one is the 13C(α, n)16O rearrangement reaction, which is believed to be the main neutron source for the s-process at low temperatures, investigated by an indirect method using the direct α-transfer reaction 13C(6Li, d)17O. Detailed investigations are suggested on the nuclear reactions relevant.

  10. The rare-RI ring

    NASA Astrophysics Data System (ADS)

    Ozawa, A.; Uesaka, T.; Wakasugi, M.; Rare-RI Ring Collaboration

    2012-12-01

    We describe the rare-RI (radioactive isotope) ring at the RI Beam Factory (RIBF). The main purpose of the rare-RI ring is to measure the mass of very neutron-rich nuclei, the production rates of which are very small (hence ‘rare RI’) and the lifetimes of which are predicted to be very short. In the rare-RI ring, there are two innovative pieces of apparatus: individual injection, which can realize the injection of 200 A MeV rare RIs one by one, and a cyclotron-like storage ring, which allows high isochronous magnetic fields with large angular and momentum acceptances. With these devices, we will achieve a 10-6 mass resolution, and will be able to access rare RIs, the production rate of which is down to 1 event/day/pnA. Construction of the rare-RI ring started in fiscal year 2012.

  11. Mass Measurement with Rare-RI Rin

    NASA Astrophysics Data System (ADS)

    Ozawa, Akira

    2014-09-01

    Mass measurement with Rare-RI Ring in RIKEN RI Beam Factory (RIBF) will be presented. The main purpose of Rare-RI Ring is to measure the mass for very neutron-rich nuclei, the production rate of which is very small (rare RI) and the life-time of which is predicted to be very short (less than 10 ms). In Rare-RI Ring, mass measurements will be performed based on isochronous mass spectrometry. There are two innovative apparatus in Rare-RI Ring: individual injection, which can realize the injection of 200 A MeV rare RI one-by-one, and a cyclotron-like storage ring, which allows high isochronous magnetic fields with large angular and momentum acceptances (~1%). By these apparatus, we will achieve a 10-6 mass resolution, and will be able to access rare RI, the production rate of which is down to 1 event/day/pnA in RIBF. Construction of Rare-RI Ring has started from the 2012 fiscal year. Construction of the storage ring itself was almost completed. In this fiscal year, we succeeded to store alphas from 241Am source and to check the production of isochronous fields in the storage ring. In this talk, present status of Rare-RI Ring and the possible mass measurement there will be presented.

  12. Weak-coupling structure of proton resonant states in 23Al studied with RI beam at CNS

    NASA Astrophysics Data System (ADS)

    He, J. J.; Kubono, S.; Teranishi, T.; Notani, M.; Michimasa, S.; Baba, H.; Nishimura, S.; Nishimura, M.; Yanagisawa, Y.; Hokoiwa, N.; Kibe, M.; Gono, Y.; Moon, J. Y.; Lee, J. H.; Lee, C. S.; Iwasaki, H.; Kato, S.

    2006-07-01

    Proton resonances in 23Al have been investigated for the first time by the resonant elastic and inelastic scattering of 22Mg+p by using a 4.38 MeV/nucleon 22Mg beam bombarding a thick Hydrogen target. The low-energy 22Mg beam was separated by the CNS radioactive ion beam separator (CRIB). A new resonant state due to elastic scattering was observed at Ex = 3.00 MeV with a Jπ = (3/2+) assignment. Other three excited states due to resonant inelastic scattering at 3.14, 3.26 and 3.95 MeV were identified and all mainly decay to the first excited state in 22Mg by the proton emissions. The newly observed 3.95-MeV state probably has a spin-parity of Jπ = (7/2+). The resonant properties were determined from an R-matrix analysis of the excitation functions. The weak-coupling structure in 23Al is discussed in conjunction with a shell-model calculation.

  13. {sup 30}S({alpha}, p) in X-Ray Bursts at CRIB

    SciTech Connect

    Kahl, D.; Kubono, S.; Binh, D. N.; Hashimoto, T.; Hayakawa, S.; Kurihara, Y.; Ohshiro, Y.; Yamaguchi, H.; Chen, A. A.; Chen, J.; Setoodeh nia, K.; Kaji, D.; Nishimura, S.; Kim, A.; Lee, N. H.; Wakabayashi, Y.

    2010-08-12

    Over the past three years, we have worked on developing a well-characterized {sup 30}S radioactive beam to be used in a future experiment aiming to directly measure the {sup 30}S({alpha}, p) stellar reaction rate within the Gamow window of Type I X-ray bursts.

  14. Rare-RI ring for mass measurements at RIBF

    SciTech Connect

    Ozawa, Akira

    2014-05-02

    The rare-RI (radioactive isotope) ring at the RIKEN RI Beam Factory is described. The main purpose of the rare-RI ring is to measure the mass of short-lived rare RI. In the rare-RI ring, the mass is determined by measuring the revolution time of each nucleus based on isochronous mass spectrometry. The rare-RI ring consists of six magnetic sectors, and each sector consists of four dipole magnets. To precisely optimize the isochronous conditions of the circulating particles for large acceptance, we install 10 trim coils to half of the dipole magnets. Individual injection system enables efficient injection of the produced rare RI into the ring one by one. With facilitating efficient extraction of the circulating particles, time-of-flight measurements can be performed to the each rare RI. Construction of the rare-RI ring was begun in the middle of the fiscal year 2012, and the ring is expected to be fully functional by 2015, when we can start the mass measurements for unknown masses.

  15. Rare-RI ring for mass measurements at RIBF

    NASA Astrophysics Data System (ADS)

    Ozawa, Akira

    2014-05-01

    The rare-RI (radioactive isotope) ring at the RIKEN RI Beam Factory is described. The main purpose of the rare-RI ring is to measure the mass of short-lived rare RI. In the rare-RI ring, the mass is determined by measuring the revolution time of each nucleus based on isochronous mass spectrometry. The rare-RI ring consists of six magnetic sectors, and each sector consists of four dipole magnets. To precisely optimize the isochronous conditions of the circulating particles for large acceptance, we install 10 trim coils to half of the dipole magnets. Individual injection system enables efficient injection of the produced rare RI into the ring one by one. With facilitating efficient extraction of the circulating particles, time-of-flight measurements can be performed to the each rare RI. Construction of the rare-RI ring was begun in the middle of the fiscal year 2012, and the ring is expected to be fully functional by 2015, when we can start the mass measurements for unknown masses.

  16. Comparison of air kerma measurements for tungsten anode based mammography x-ray beam qualities (EURAMET.RI(I)-S4.1)

    NASA Astrophysics Data System (ADS)

    Csete, I.; Büermann, L.; Gomola, I.

    2016-01-01

    A comparison of the air kerma standards for x-radiation qualities used in mammography was performed between the PTB and the IAEA. Two reference-class ionization chamber types Radcal RC6M and Magna A650 of the IAEA and tungsten anode based beam qualities with Mo and Al external filtrations (W+Mo, W+Al) established at both laboratories were selected for the comparison. The calibration coefficients, NK_air, were determined for the transfer chambers at the PTB in May 2015 and before and after this at the IAEA Dosimetry Laboratory. The results show good agreement, to be well within the 0.55 % standard uncertainty of the comparison. Correction factors to determine NK_air for these beam qualities based on calibration in RQR-M mammography beam qualities, established according to the IEC 61267 standard, were also calculated for the Radcal RC6M, 10X5-6M, and Magna A650 types of chambers. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  17. Key comparison BIPM.RI(I)-K6 of the standards for absorbed dose to water at 10 g cm-2 of the NMIJ, Japan and the BIPM in accelerator photon beams

    NASA Astrophysics Data System (ADS)

    Picard, S.; Burns, D. T.; Roger, P.; Shimizu, M.; Morishita, Y.; Kato, M.; Tanaka, T.; Kurosawa, T.; Saito, N.

    2016-01-01

    A comparison of the dosimetry for accelerator photon beams was carried out between the National Metrology Institute of Japan (NMIJ) and the Bureau International des Poids et Mesures (BIPM) from 9 to 23 April 2015. The comparison was based on the determination of absorbed dose to water at 10 g cm-2 for three radiation qualities at the NMIJ. The results, reported as ratios of the NMIJ and the BIPM evaluations (and with the combined standard uncertainties given in parentheses), are 0.9966 (47) at 6 MV, 0.9965 (60) at 10 MV and 0.9953 (50) at 15 MV. This result is the eighth in the on-going BIPM.RI(I)-K6 series of comparisons. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  18. Nuclear structure of 30S and its implications for nucleosynthesis in classical novae

    NASA Astrophysics Data System (ADS)

    Setoodehnia, K.; Chen, A. A.; Kahl, D.; Komatsubara, T.; José, J.; Longland, R.; Abe, Y.; Binh, D. N.; Chen, J.; Cherubini, S.; Clark, J. A.; Deibel, C. M.; Fukuoka, S.; Hashimoto, T.; Hayakawa, T.; Hendriks, J.; Ishibashi, Y.; Ito, Y.; Kubono, S.; Lennard, W. N.; Moriguchi, T.; Nagae, D.; Nishikiori, R.; Niwa, T.; Ozawa, A.; Parker, P. D.; Seiler, D.; Shizuma, T.; Suzuki, H.; Wrede, C.; Yamaguchi, H.; Yuasa, T.

    2013-06-01

    Background: The uncertainty in the 29P(p,γ)30S reaction rate over 0.1 ≤ T ≤ 1.3 GK was previously determined to span approximately four orders of magnitude due to the uncertain location of two previously unobserved 3+ and 2+ resonances in the Ex=4.7-4.8 MeV region in 30S. Therefore, the abundances of silicon isotopes synthesized in novae, which are relevant for the identification of presolar grains of putative nova origin, were uncertain by a factor of 3.Purpose: (a) To investigate the level structure of 30S above the proton threshold [4394.9(7) keV] via charged-particle spectroscopy using the 32S(p,t)30S reaction and in-beam γ-ray spectroscopy using the 28Si(3He, nγ)30S reaction to calculate the 29P(p,γ)30S reaction rate. (b) To explore the impact of this rate on the abundances of silicon isotopes synthesized in novae.Methods: Differential cross sections of the 32S(p,t)30S reaction were measured at 34.5 MeV. Distorted-wave Born approximation calculations were performed to constrain the spin-parity assignments of the observed levels, including the two astrophysically important levels. An energy-level scheme was deduced from γ-γ coincidence measurements using the 28Si(3He, nγ)30S reaction. Spin-parity assignments based on measurements of γ-ray angular distributions and γ-γ directional correlation from oriented nuclei were made for most of the observed levels of 30S.Results: The resonance energies corresponding to the states with 4.5 MeV ≲ Ex ≲ 6 MeV, including the two astrophysically important states predicted previously, are measured with significantly better precision than before. The spin-parity assignments of both astrophysically important resonances are confirmed. The uncertainty in the rate of the 29P(p,γ)30S reaction is substantially reduced over the temperature range of interest. Finally, the influence of this rate on the abundance ratios of silicon isotopes synthesized in novae are obtained via 1D hydrodynamic nova simulations

  19. Goniometer-based femtosecond X-ray diffraction of mutant 30S ribosomal subunit crystals

    SciTech Connect

    Dao, E. Han; Sierra, Raymond G.; Laksmono, Hartawan; Lemke, Henrik T.; Alonso-Mori, Roberto; Coey, Aaron; Larsen, Kevin; Baxter, Elizabeth L.; Cohen, Aina E.; Soltis, S. Michael; DeMirci, Hasan

    2015-04-30

    In this work, we collected radiation-damage-free data from a set of cryo-cooled crystals for a novel 30S ribosomal subunit mutant using goniometer-based femtosecond crystallography. Crystal quality assessment for these samples was conducted at the X-ray Pump Probe end-station of the Linac Coherent Light Source (LCLS) using recently introduced goniometer-based instrumentation. These 30S subunit crystals were genetically engineered to omit a 26-residue protein, Thx, which is present in the wild-type Thermus thermophilus 30S ribosomal subunit. We are primarily interested in elucidating the contribution of this ribosomal protein to the overall 30S subunit structure. To assess the viability of this study, femtosecond X-ray diffraction patterns from these crystals were recorded at the LCLS during a protein crystal screening beam time. During our data collection, we successfully observed diffraction from these difficult-to-grow 30S ribosomal subunit crystals. Most of our crystals were found to diffract to low resolution, while one crystal diffracted to 3.2 Å resolution. These data suggest the feasibility of pursuing high-resolution data collection as well as the need to improve sample preparation and handling in order to collect a complete radiation-damage-free data set using an X-ray Free Electron Laser.

  20. Goniometer-based femtosecond X-ray diffraction of mutant 30S ribosomal subunit crystals

    DOE PAGESBeta

    Dao, E. Han; Sierra, Raymond G.; Laksmono, Hartawan; Lemke, Henrik T.; Alonso-Mori, Roberto; Coey, Aaron; Larsen, Kevin; Baxter, Elizabeth L.; Cohen, Aina E.; Soltis, S. Michael; et al

    2015-04-30

    In this work, we collected radiation-damage-free data from a set of cryo-cooled crystals for a novel 30S ribosomal subunit mutant using goniometer-based femtosecond crystallography. Crystal quality assessment for these samples was conducted at the X-ray Pump Probe end-station of the Linac Coherent Light Source (LCLS) using recently introduced goniometer-based instrumentation. These 30S subunit crystals were genetically engineered to omit a 26-residue protein, Thx, which is present in the wild-type Thermus thermophilus 30S ribosomal subunit. We are primarily interested in elucidating the contribution of this ribosomal protein to the overall 30S subunit structure. To assess the viability of this study, femtosecondmore » X-ray diffraction patterns from these crystals were recorded at the LCLS during a protein crystal screening beam time. During our data collection, we successfully observed diffraction from these difficult-to-grow 30S ribosomal subunit crystals. Most of our crystals were found to diffract to low resolution, while one crystal diffracted to 3.2 Å resolution. These data suggest the feasibility of pursuing high-resolution data collection as well as the need to improve sample preparation and handling in order to collect a complete radiation-damage-free data set using an X-ray Free Electron Laser.« less

  1. Experimental investigation of the 30S(α, p) thermonuclear reaction in x-ray bursts

    NASA Astrophysics Data System (ADS)

    Kahl, D.; Chen, A. A.; Kubono, S.; Yamaguchi, H.; Binh, D. N.; Chen, J.; Cherubini, S.; Duy, N. N.; Hashimoto, T.; Hayakawa, S.; Iwasa, N.; Jung, H. S.; Kato, S.; Kwon, Y. K.; Nishimura, S.; Ota, S.; Setoodehnia, K.; Teranishi, T.; Tokieda, H.; Yamada, T.; Yun, C. C.; Zhang, L. Y.

    2016-02-01

    We performed the first measurement of 30S+α resonant elastic scattering to experimentally examine the 30S(α, p) stellar reaction rate in type I x-ray bursts. These bursts are the most frequent thermonuclear explosions in the galaxy, resulting from thermonuclear runaway on the surface of accreting neutron star binaries. The 30S(α, p) reaction plays a critical role in burst models, yet very little is known about the compound nucleus 34Ar at these energies nor the reaction rate itself. We performed a measurement of alpha elastic scattering with a radioactive beam of 30S to experimentally probe the entrance channel. Utilizing a gaseous active target system and silicon detector array, we extracted the excitation function from 1.8 to 5.5 MeV near 160° in the center-of-mass frame. The experimental data were analyzed with an R-Matrix calculation, and we discovered several new resonances and extracted their quantum properties (resonance energy, width, spin, and parity). Finally, we calculated the narrow resonant thermonuclear reaction rate of 30S(α, p) for these new resonances.

  2. Cross-links between ribosomal proteins of 30S subunits in 70S tight couples and in 30S subunits.

    PubMed

    Lambert, J M; Boileau, G; Cover, J A; Traut, R R

    1983-08-01

    Ribosome 70S tight couples and 30S subunits derived from them were modified with 2-iminothiolane under conditions where about two sulfhydryl groups per protein were added to the ribosomal particles. The 70S and 30S particles were not treated with elevated concentrations of NH4Cl, in contrast to those used in earlier studies. The modified particles were oxidized to promote disulfide bond formation. Proteins were extracted from the cross-linked particles by using conditions to preclude disulfide interchange. Disulfide-linked protein complexes were fractionated on the basis of charge by electrophoresis in polyacrylamide/urea gels at pH 5.5. The proteins from sequential slices of the urea gels were analyzed by two-dimensional diagonal polyacrylamide/sodium dodecyl sulfate gel electrophoresis. Final identification of proteins in cross-linked complexes was made by radioiodination of the proteins, followed by two-dimensional polyacrylamide/urea gel electrophoresis. Attention was focused on cross-links between 30S proteins. We report the identification of 27 cross-linked dimers and 2 trimers of 30S proteins, all but one of which were found in both 70S ribosomes and free 30S subunits in similar yield. Seven of the cross-links, S3-S13, S13-S21, S14-S19, S7-S12, S9-S13, S11-S21, and S6-S18-S21, have not been reported previously when 2-iminothiolane was used. Cross-links S3-S13, S13-S21, S7-S12, S11-S21, and S6-S18-S21 are reported for the first time. The identification of the seven new cross-links is illustrated and discussed in detail. Ten of the dimers reported in the earlier studies of Sommer & Traut (1976) [Sommer, A., & Traut, R. R. (1976) J. Mol. Biol. 106, 995-1015], using 30S subunits treated with high salt concentrations, were not found in the experiments reported here.

  3. RI 1170 advanced strapdown gyro

    NASA Technical Reports Server (NTRS)

    1973-01-01

    The major components of the RI 1170 gyroscope are described. A detailed functional description of the electronics including block diagrams and photographs of output waveshapes within the loop electronics are presented. An electronic data flow diagram is included. Those gyro subassemblies that were originally planned and subsequently changed or modified for one reason or another are discussed in detail. Variations to the original design included the capacitive pickoffs, torquer flexleads, magnetic suspension, gas bearings, electronic design, and packaging. The selection of components and changes from the original design and components selected are discussed. Device failures experienced throughout the program are reported and design corrections to eliminate the failure modes are noted. Major design deficiencies such as those of the MSE electronics are described in detail. Modifications made to the gas bearing parts and design improvements to the wheel are noted. Changes to the gas bearing prints are included as well as a mathematical analysis of the 1170 gas bearing wheel by computer analysis. The mean free-path effects on gas bearing performance is summarized.

  4. Molecular mechanics of 30S subunit head rotation.

    PubMed

    Mohan, Srividya; Donohue, John Paul; Noller, Harry F

    2014-09-16

    During ribosomal translocation, a process central to the elongation phase of protein synthesis, movement of mRNA and tRNAs requires large-scale rotation of the head domain of the small (30S) subunit of the ribosome. It has generally been accepted that the head rotates by pivoting around the neck helix (h28) of 16S rRNA, its sole covalent connection to the body domain. Surprisingly, we observe that the calculated axis of rotation does not coincide with the neck. Instead, comparative structure analysis across 55 ribosome structures shows that 30S head movement results from flexing at two hinge points lying within conserved elements of 16S rRNA. Hinge 1, although located within the neck, moves by straightening of the kinked helix h28 at the point of contact with the mRNA. Hinge 2 lies within a three-way helix junction that extends to the body through a second, noncovalent connection; its movement results from flexing between helices h34 and h35 in a plane orthogonal to the movement of hinge 1. Concerted movement at these two hinges accounts for the observed magnitudes of head rotation. Our findings also explain the mode of action of spectinomycin, an antibiotic that blocks translocation by binding to hinge 2.

  5. 76 FR 50770 - Submission for Review: Financial Resources Questionnaire (RI 34-1, RI 34-17, and RI 34-18) and...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-16

    ... Resources Questionnaire (RI 34-1), Financial Resources Questionnaire--Federal Employees' Group Life Insurance Premiums Underpaid (RI 34-17), and Financial Resources Questionnaire--Federal Employees Health Benefits Premiums Underpaid (RI 34-18), collects detailed financial information for use by OPM to...

  6. 77 FR 6010 - Anchorage Regulations; Newport, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-07

    ..., DHS. ACTION: Final rule. SUMMARY: The Coast Guard is changing the shape and expanding the dimensions...; Newport, RI'' in the Federal Register (76 FR 59596). We received no comments on the proposed rule. Basis... this rule is to change the shape and expand the dimensions of anchorage ``D'' at Newport, Rhode...

  7. 34. Boston switch interlocking tower. Central Falls, Providence Co., RI. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    34. Boston switch interlocking tower. Central Falls, Providence Co., RI. Sec. 4116, mp 190.40. - Northeast Railroad Corridor, Amtrak route between CT & MA state lines, Providence, Providence County, RI

  8. Outreach and Education with Europlanet 2020 RI

    NASA Astrophysics Data System (ADS)

    Heward, Anita R.; Barrosa, Mariana; Europlanet 2020 RI

    2016-10-01

    Since 2005, Europlanet has provided a framework to bring together Europe's widespread planetary science community. The project has evolved through a number of phases, and currently comprises a Research Infrastructure (RI) funded through the European Commission's Horizon 2020 program, as well as a self-sustaining membership organization. Launched in September 2015, Europlanet 2020 RI provides support, services, access to facilities, new research tools and a virtual planetary observatory. Europlanet 2020 RI's outreach and education program aims to engage members of the public, schools, teachers, policy makers and industrial partners across Europe with planetary science and the opportunities that it provides for innovation, inspiration and job creation. Europlanet's outreach and education activities are led by Science Office Ltd, a Portuguese-based SME, and a network of partners spread across nine countries including University College London, the University of Leiden, University of Latvia, Vilnius University, the Institute of Accelerating Systems and Applications, the Observatoire de Paris, CAB-INTA and the Austrian Space Forum.Europlanet supports educators and outreach providers within the planetary science community by organizing meetings, best practice workshops and communication training sessions, offering a seed-funding scheme for outreach activities, and awarding an annual prize for public engagement. Europlanet is also developing its own education and outreach resources, including an animation on 'Jupiter and its Icy Moons' (the first in a series of video "shorts") and kits for hands-on comparative planetology activities. The Europlanet Media Centre uses traditional and social media channels to communicate newsworthy results and activities to diverse audiences in Europe and worldwide. Using tools like Google Hangouts, the project connects planetary researchers directly with the public and school groups. In addition, Europlanet engages with policy makers in the

  9. Radio Meteors Observations Techniques at RI NAO

    NASA Astrophysics Data System (ADS)

    Vovk, Vasyl; Kaliuzhnyi, Mykola

    2016-07-01

    The Solar system is inhabited with large number of celestial bodies. Some of them are well studied, such as planets and vast majority of big asteroids and comets. There is one group of objects which has received little attention. That is meteoroids with related to them meteors. Nowadays enough low-technology high-efficiency radio-technical solutions are appeared which allow to observe meteors daily. At RI NAO three methodologies for meteor observation are developed: single-station method using FM-receiver, correlation method using FM-receiver and Internet resources, and single-station method using low-cost SDR-receiver.

  10. 33 CFR 334.80 - Narragansett Bay, RI; restricted area.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Narragansett Bay, RI; restricted area. 334.80 Section 334.80 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.80 Narragansett Bay, RI;...

  11. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  12. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  13. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  14. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  15. 33 CFR 80.150 - Block Island, RI.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Block Island, RI. 80.150 Section... NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.150 Block Island, RI. The 72 COLREGS shall apply on the harbors of Block Island....

  16. Characterization of Three New Glutaredoxin Genes in the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis: Putative Role of RiGRX4 and RiGRX5 in Iron Homeostasis.

    PubMed

    Tamayo, Elisabeth; Benabdellah, Karim; Ferrol, Nuria

    2016-01-01

    Glutaredoxins (GRXs) are small ubiquitous oxidoreductases involved in the regulation of the redox state in living cells. In an attempt to identify the full complement of GRXs in the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis, three additional GRX homologs, besides the formerly characterized GintGRX1 (renamed here as RiGRX1), were identified. The three new GRXs (RiGRX4, RiGRX5 and RiGRX6) contain the CXXS domain of monothiol GRXs, but whereas RiGRX4 and RiGRX5 belong to class II GRXs, RiGRX6 belongs to class I together with RiGRX1. By using a yeast expression system, we observed that the newly identified homologs partially reverted sensitivity of the GRX deletion yeast strains to external oxidants. Furthermore, our results indicated that RiGRX4 and RiGRX5 play a role in iron homeostasis in yeast. Gene expression analyses revealed that RiGRX1 and RiGRX6 were more highly expressed in the intraradical (IRM) than in the extraradical mycelium (ERM). Exposure of the ERM to hydrogen peroxide induced up-regulation of RiGRX1, RiGRX4 and RiGRX5 gene expression. RiGRX4 expression was also up-regulated in the ERM when the fungus was grown in media supplemented with a high iron concentration. These data indicate the two monothiol class II GRXs, RiGRX4 and RiGRX5, might be involved in oxidative stress protection and in the regulation of fungal iron homeostasis. Increased expression of RiGRX1 and RiGRX6 in the IRM suggests that these GRXs should play a key role in oxidative stress protection of R. irregularis during its in planta phase.

  17. Characterization of Three New Glutaredoxin Genes in the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis: Putative Role of RiGRX4 and RiGRX5 in Iron Homeostasis

    PubMed Central

    Tamayo, Elisabeth; Benabdellah, Karim; Ferrol, Nuria

    2016-01-01

    Glutaredoxins (GRXs) are small ubiquitous oxidoreductases involved in the regulation of the redox state in living cells. In an attempt to identify the full complement of GRXs in the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis, three additional GRX homologs, besides the formerly characterized GintGRX1 (renamed here as RiGRX1), were identified. The three new GRXs (RiGRX4, RiGRX5 and RiGRX6) contain the CXXS domain of monothiol GRXs, but whereas RiGRX4 and RiGRX5 belong to class II GRXs, RiGRX6 belongs to class I together with RiGRX1. By using a yeast expression system, we observed that the newly identified homologs partially reverted sensitivity of the GRX deletion yeast strains to external oxidants. Furthermore, our results indicated that RiGRX4 and RiGRX5 play a role in iron homeostasis in yeast. Gene expression analyses revealed that RiGRX1 and RiGRX6 were more highly expressed in the intraradical (IRM) than in the extraradical mycelium (ERM). Exposure of the ERM to hydrogen peroxide induced up-regulation of RiGRX1, RiGRX4 and RiGRX5 gene expression. RiGRX4 expression was also up-regulated in the ERM when the fungus was grown in media supplemented with a high iron concentration. These data indicate the two monothiol class II GRXs, RiGRX4 and RiGRX5, might be involved in oxidative stress protection and in the regulation of fungal iron homeostasis. Increased expression of RiGRX1 and RiGRX6 in the IRM suggests that these GRXs should play a key role in oxidative stress protection of R. irregularis during its in planta phase. PMID:26900849

  18. Characterization of Three New Glutaredoxin Genes in the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis: Putative Role of RiGRX4 and RiGRX5 in Iron Homeostasis.

    PubMed

    Tamayo, Elisabeth; Benabdellah, Karim; Ferrol, Nuria

    2016-01-01

    Glutaredoxins (GRXs) are small ubiquitous oxidoreductases involved in the regulation of the redox state in living cells. In an attempt to identify the full complement of GRXs in the arbuscular mycorrhizal (AM) fungus Rhizophagus irregularis, three additional GRX homologs, besides the formerly characterized GintGRX1 (renamed here as RiGRX1), were identified. The three new GRXs (RiGRX4, RiGRX5 and RiGRX6) contain the CXXS domain of monothiol GRXs, but whereas RiGRX4 and RiGRX5 belong to class II GRXs, RiGRX6 belongs to class I together with RiGRX1. By using a yeast expression system, we observed that the newly identified homologs partially reverted sensitivity of the GRX deletion yeast strains to external oxidants. Furthermore, our results indicated that RiGRX4 and RiGRX5 play a role in iron homeostasis in yeast. Gene expression analyses revealed that RiGRX1 and RiGRX6 were more highly expressed in the intraradical (IRM) than in the extraradical mycelium (ERM). Exposure of the ERM to hydrogen peroxide induced up-regulation of RiGRX1, RiGRX4 and RiGRX5 gene expression. RiGRX4 expression was also up-regulated in the ERM when the fungus was grown in media supplemented with a high iron concentration. These data indicate the two monothiol class II GRXs, RiGRX4 and RiGRX5, might be involved in oxidative stress protection and in the regulation of fungal iron homeostasis. Increased expression of RiGRX1 and RiGRX6 in the IRM suggests that these GRXs should play a key role in oxidative stress protection of R. irregularis during its in planta phase. PMID:26900849

  19. Two-neutron knockout from neutron-deficient {sup 34}Ar, {sup 30}S, and {sup 26}Si

    SciTech Connect

    Yoneda, K.; Obertelli, A.; Bazin, D.; Hoagland, T.; Lecouey, J.-L.; Mueller, W. F.; Gade, A.; Brown, B. A.; Campbell, C. M.; Cook, J. M.; Davies, A. D.; Dinca, D.-C.; Glasmacher, T.; Hansen, P. G.; Terry, J. R.; Zwahlen, H.; Cottle, P. D.; Kemper, K. W.; Reynolds, R. R.; Roeder, B. T.

    2006-08-15

    Two-neutron knockout reactions from nuclei in the proximity of the proton dripline have been studied using intermediate-energy beams of neutron-deficient {sup 34}Ar, {sup 30}S, and {sup 26}Si. The inclusive cross sections, and also the partial cross sections for the population of individual bound final states of the {sup 32}Ar, {sup 28}S and {sup 24}Si knockout residues, have been determined using the combination of particle and {gamma}-ray spectroscopy. Similar to the two-proton knockout mechanism on the neutron-rich side of the nuclear chart, these two-neutron removal reactions from already neutron-deficient nuclei are also shown to be consistent with a direct reaction mechanism.

  20. The protein composition of reconstituted 30S ribosomal subunits: the effects of single protein omission.

    PubMed

    Buck, M A; Olah, T V; Perrault, A R; Cooperman, B S

    1991-06-01

    Using reverse phase HPLC, we have been able to quantify the protein compositions of reconstituted 30S ribosomal subunits, formed either with the full complement of 30S proteins in the reconstitution mix or with a single protein omitted. We denote particles formed in the latter case as SPORE (single protein omission reconstitution) particles. An important goal in 30S reconstitution studies is the formation of reconstituted subunits having uniform protein composition, preferably corresponding to one copy of each protein per reconstituted particle. Here we describe procedures involving variation of the protein:rRNA ratio that approach this goal. In SPORE particles the omission of one protein often results in the partial loss in uptake of other proteins. We also describe procedures to increase the uptake of such proteins into SPORE particles, thus enhancing the utility of the SPORE approach in defining the role of specific proteins in 30S structure and function. The losses of proteins other than the omitted protein provide a measure of protein:protein interaction within the 30S subunit. Most of these losses are predictable on the basis of other such measures. However, we do find evidence for several long-range protein:protein interactions (S6:S3, S6:S12, S10:S16, and S6:S4) that have not been described previously.

  1. The effect of ribosome assembly cofactors on in vitro 30S subunit reconstitution.

    PubMed

    Bunner, Anne E; Nord, Stefan; Wikström, P Mikael; Williamson, James R

    2010-04-23

    Ribosome biogenesis is facilitated by a growing list of assembly cofactors, including helicases, GTPases, chaperones, and other proteins, but the specific functions of many of these assembly cofactors are still unclear. The effect of three assembly cofactors on 30S ribosome assembly was determined in vitro using a previously developed mass-spectrometry-based method that monitors the rRNA binding kinetics of ribosomal proteins. The essential GTPase Era caused several late-binding proteins to bind rRNA faster when included in a 30S reconstitution. RimP enabled faster binding of S9 and S19 and inhibited the binding of S12 and S13, perhaps by blocking those proteins' binding sites. RimM caused proteins S5 and S12 to bind dramatically faster. These quantitative kinetic data provide important clues about the roles of these assembly cofactors in the mechanism of 30S biogenesis.

  2. mRNA bound to the 30S subunit is a HigB toxin substrate.

    PubMed

    Schureck, Marc A; Maehigashi, Tatsuya; Miles, Stacey J; Marquez, Jhomar; Dunham, Christine M

    2016-08-01

    Activation of bacterial toxins during stress results in cleavage of mRNAs in the context of the ribosome. These toxins are thought to function as global translational inhibitors yet recent studies suggest each may have distinct mRNA specificities that result in selective translation for bacterial survival. Here we demonstrate that mRNA in the context of a bacterial 30S subunit is sufficient for ribosome-dependent toxin HigB endonucleolytic activity, suggesting that HigB interferes with the initiation step of translation. We determined the X-ray crystal structure of HigB bound to the 30S, revealing that two solvent-exposed clusters of HigB basic residues directly interact with 30S 16S rRNA helices 18, 30, and 31. We further show that these HigB residues are essential for ribosome recognition and function. Comparison with other ribosome-dependent toxins RelE and YoeB reveals that each interacts with similar features of the 30S aminoacyl (A) site yet does so through presentation of diverse structural motifs.

  3. Binding of 16S rRNA to chloroplast 30S ribosomal proteins blotted on nitrocellulose.

    PubMed

    Rozier, C; Mache, R

    1984-10-11

    Protein-RNA associations were studied by a method using proteins blotted on a nitrocellulose sheet. This method was assayed with Escherichia Coli 30S ribosomal components. In stringent conditions (300 mM NaCl or 20 degrees C) only 9 E. coli ribosomal proteins strongly bound to the 16S rRNA: S4, S5, S7, S9, S12, S13, S14, S19, S20. 8 of these proteins have been previously found to bind independently to the 16S rRNA. The same method was applied to determine protein-RNA interactions in spinach chloroplast 30S ribosomal subunits. A set of only 7 proteins was bound to chloroplast rRNA in stringent conditions: chloroplast S6, S10, S11, S14, S15, S17 and S22. They also bound to E. coli 16S rRNA. This set includes 4 chloroplast-synthesized proteins: S6, S11, S15 and S22. The core particles obtained after treatment by LiCl of chloroplast 30S ribosomal subunit contained 3 proteins (S6, S10 and S14) which are included in the set of 7 binding proteins. This set of proteins probably play a part in the early steps of the assembly of the chloroplast 30S ribosomal subunit.

  4. Exploring assembly energetics of the 30S ribosomal subunit using an implicit solvent approach.

    PubMed

    Trylska, Joanna; McCammon, J Andrew; Brooks Iii, Charles L

    2005-08-10

    To explore the relationship between the assembly of the 30S ribosomal subunit and interactions among the constituent components, 16S RNA and proteins, relative binding free energies of the T. thermophilus 30S proteins to the 16S RNA were studied based on an implicit solvent model of electrostatic, nonpolar, and entropic contributions. The late binding proteins in our assembly map were found not to bind to the naked 16S RNA. The 5' domain early kinetic class proteins, on average, carry the highest positive charge, get buried the most upon binding to 16S RNA, and show the most favorable binding. Some proteins (S10/S14, S6/S18, S13/S19) have more stabilizing interactions while binding as dimers. Our computed assembly map resembles that of E. coli; however, the central domain path is more similar to that of A. aeolicus, a hyperthermophilic bacteria.

  5. Growth, Persistence, and Desistance of Alcohol Use for At-Risk Men in Their 30s

    PubMed Central

    Capaldi, Deborah M.; Tiberio, Stacey S.; Washburn, Isaac J.; Yoerger, Karen; Feingold, Alan

    2015-01-01

    Background Little is known about heterogeneity in men's drinking behaviors and their related consequences across midadulthood, and moreover, whether individual or social factors may predict such differences. The present study examined 3 indicators of alcohol use; namely, alcohol volume, heavy episodic drinking (HED), and drinking-related problems for men in their 30s. Methods Participants were 197 at-risk men from the Oregon Youth Study assessed 5 times across ages 29–38 years. Growth mixture modeling with count outcomes was used to examine unobserved heterogeneity in alcohol trajectories. Associations of latent classes of alcohol users with (i) classes for the other alcohol indicators, (ii) alcohol use by peers and romantic partners, (iii) alcohol classes previously extracted from ages 18–29 years, and (iv) past year alcohol use disorder (AUD) diagnostic status at ages 35–36 years was examined. Results A 3-class solution afforded the best fit for each alcohol indicator. Alcohol problems were relatively established in the 30s, with an ascending use class found only for volume. Although relatively few men were in higher classes for all 3 indicators, 45% of the sample was in the highest class on at least 2 indicators of use. Peer drunkenness was a robust predictor of the alcohol classes. Concordance among classes of alcohol users was seen from the 20s to the 30s, with prior desistance likely to be maintained for alcohol volume and HED. AUD diagnoses at ages 35–36 years were more common in the higher classes obtained for alcohol volume and alcohol problems. Conclusions Many men in their 30s engaged in high volume of alcohol without frequent engagement in HED, likely relating to continuing alcohol problems. The convergence of men's alcohol use with that of their peers found at younger ages was maintained into early midadulthood. PMID:26010338

  6. Neutron Scattering and the 30 S Ribosomal Subunit of E. Coli

    DOE R&D Accomplishments Database

    Moore, P. B.; Engelman, D. M.; Langer, J. A.; Ramakrishnan, V. R.; Schindler, D. G.; Schoenborn, B. P.; Sillers, I. Y.; Yabuki, S.

    1982-06-01

    This paper reviews the progress made in the study of the internal organization of the 30 S ribosomal subunit of E. coli by neutron scattering since 1975. A map of that particle showing the position of 14 of the subunit's 21 proteins is presented, and the methods currently used for collecting and analyzing such data are discussed. Also discussed is the possibility of extending the interpretation of neutron mapping data beyond the limits practical today.

  7. Neutron scattering and the 30 S ribosomal subunit of E. coli

    SciTech Connect

    Moore, P.B.; Engelman, D.M.; Langer, J.A.; Ramakrishnan, V.R.; Schindler, D.G.; Schoenborn, B.P.; Sillers, I.Y.; Yabuki, S.

    1982-01-01

    This paper reviews the progress made in the study of the internal organization of the 30 S ribosomal subunit of E. coli by neutron scattering since 1975. A map of that particle showing the position of 14 of the subunit's 21 proteins is presented, and the methods currently used for collecting and analyzing such data are discussed. Also discussed is the possibility of extending the interpretation of neutron mapping data beyond the limits practical today. 30 references, 5 figures.

  8. A purified nucleoprotein fragment of the 30 S ribosomal subunit of Escherichia coli.

    PubMed

    Spitnik-Elson, P; Elson, D; Abramowitz, R

    1979-02-27

    A '13 S' nucleoprotein fragment was isolated from a nuclease digest of Escherichia coli 30-S ribosomal subunits and purified to gel electrophoretic homogeneity. It contained two polynucleotides, of about 1.1 . 10(5) and 2.5 . 10(4) daltons, which separated when the fragment was deproteinized. The major protein components were S4, S7 and S9/11, with S15, S16, S18, S19 and S20 present in reduced amount.

  9. A role for the 30S subunit E site in maintenance of the translational reading frame

    PubMed Central

    Devaraj, Aishwarya; Shoji, Shinichiro; Holbrook, Eric D.; Fredrick, Kurt

    2009-01-01

    The exit (E) site has been implicated in several ribosomal activities, including translocation, decoding, and maintenance of the translational reading frame. Here, we target the 30S subunit E site by introducing a deletion in rpsG that truncates the β-hairpin of ribosomal protein S7. This mutation (S7ΔR77–Y84) increases both −1 and +1 frameshifting but does not increase miscoding, providing evidence that the 30S E site plays a specific role in frame maintenance. Mutation S7ΔR77–Y84 also stimulates +1 programmed frameshifting during prfB′-lacZ translation in many synthetic contexts. However, no effect is seen when the E codon of the frameshift site corresponds to those found in nature, suggesting that E-tRNA release does not normally limit the rate of prfB frameshifting. Ribosomes containing S7ΔR77–Y84 exhibit an elevated rate of spontaneous reverse translocation and an increased K 1/2 for E-tRNA. These effects are of similar magnitude, suggesting that both result from destabilization of E-tRNA. Finally, this mutation of the 30S E site does not inhibit EF-G-dependent translocation, consistent with a primary role for the 50S E site in the mechanism. PMID:19095617

  10. Concurrent Nucleation of 16S Folding and Induced Fit in 30S Ribosome Assembly

    SciTech Connect

    Adilakshmi, T.; Bellur, D; Woodson, S

    2008-01-01

    Rapidly growing cells produce thousands of new ribosomes each minute, in a tightly regulated process that is essential to cell growth. How the Escherichia coli 16S ribosomal RNA and the 20 proteins that make up the 30S ribosomal subunit can assemble correctly in a few minutes remains a challenging problem, partly because of the lack of real-time data on the earliest stages of assembly. By providing snapshots of individual RNA and protein interactions as they emerge in real time, here we show that 30S assembly nucleates concurrently from different points along the rRNA. Time-resolved hydroxyl radical footprinting3 was used to map changes in the structure of the rRNA within 20 milliseconds after the addition of total 30S proteins. Helical junctions in each domain fold within 100 ms. In contrast, interactions surrounding the decoding site and between the 5', the central and the 3' domains require 2-200 seconds to form. Unexpectedly, nucleotides contacted by the same protein are protected at different rates, indicating that initial RNA-protein encounter complexes refold during assembly. Although early steps in assembly are linked to intrinsically stable rRNA structure, later steps correspond to regions of induced fit between the proteins and the rRNA.

  11. 75 FR 22872 - Rhode Island Disaster Number RI-00006

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-30

    ... ADMINISTRATION Rhode Island Disaster Number RI-00006 AGENCY: U.S. Small Business Administration. ACTION... of Rhode Island (FEMA-1894-DR), dated 03/ 29/2010. Incident: Severe storms and flooding. Incident... of Rhode Island, dated 03/29/2010 is hereby amended to establish the incident period for...

  12. 75 FR 17178 - Rhode Island Disaster #RI-00006

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-05

    ... ADMINISTRATION Rhode Island Disaster RI-00006 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY: This is a Notice of the Presidential declaration of a major disaster for the State of Rhode Island.... Contiguous Counties (Economic Injury Loans Only): Rhode Island: Bristol. Connecticut: New London,...

  13. 78 FR 4967 - Rhode Island Disaster #RI-00010

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-23

    ... ADMINISTRATION Rhode Island Disaster RI-00010 AGENCY: U.S. Small Business Administration. ACTION: Amendment 1... Island (FEMA-4089-DR), dated 11/ 14/2012. Incident: Hurricane Sandy. Incident Period: 10/26/2012 through... the President's major disaster declaration for the State of Rhode Island, dated 11/14/2012 is...

  14. 77 FR 67857 - Rhode Island Disaster #RI-00011

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-14

    ... From the Federal Register Online via the Government Publishing Office SMALL BUSINESS ADMINISTRATION Rhode Island Disaster RI-00011 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY... State of Rhode Island (FEMA-4089-DR), dated 11/03/2012. Incident: Hurricane Sandy. Incident Period:...

  15. 75 FR 19666 - Rhode Island Disaster #RI-00007

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-15

    ... From the Federal Register Online via the Government Publishing Office SMALL BUSINESS ADMINISTRATION Rhode Island Disaster RI-00007 AGENCY: Small Business Administration. ACTION: Notice. SUMMARY... State of Rhode Island (FEMA-1894-DR), dated 04/08/2010. Incident: Severe Storms and Flooding....

  16. 75 FR 22873 - Rhode Island Disaster Number RI-00007

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-30

    ... ADMINISTRATION Rhode Island Disaster Number RI-00007 AGENCY: U.S. Small Business Administration. ACTION... Assistance Only for the State of Rhode Island (FEMA-1894-DR), dated 04/08/2010. Incident: Severe storms and... Private Non-Profit organizations in the State of Rhode Island, dated 04/08/2010, is hereby amended...

  17. 77 FR 70203 - Rhode Island Disaster #RI-00010

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-23

    ... ADMINISTRATION Rhode Island Disaster RI-00010 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY: This is a Notice of the Presidential declaration of a major disaster for the State of Rhode Island...): Rhode Island: Kent. Connecticut: New London. Massachusetts: Bristol. The Interest Rates are: Percent...

  18. 77 FR 69915 - Rhode Island Disaster Number RI-00011

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-21

    ... ADMINISTRATION Rhode Island Disaster Number RI-00011 AGENCY: U.S. Small Business Administration. ACTION... Assistance Only for the State of Rhode Island (FEMA-4089-DR), dated 11/03/2012. Incident: Hurricane Sandy... Private Non-Profit organizations in the State of RHODE ISLAND, dated 11/03/2012, is hereby amended...

  19. 75 FR 18554 - Rhode Island Disaster Number RI-00006

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-04-12

    ... ADMINISTRATION Rhode Island Disaster Number RI-00006 AGENCY: U.S. Small Business Administration. ACTION... of Rhode Island (FEMA-1894-DR), dated 03/ 29/2010. Incident: Severe storms and flooding. Incident... INFORMATION: The notice of the Presidential disaster declaration for the State of Rhode Island, dated...

  20. 78 FR 21492 - Rhode Island Disaster #RI-00012

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-10

    ... From the Federal Register Online via the Government Publishing Office ] SMALL BUSINESS ADMINISTRATION Rhode Island Disaster RI-00012 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY... State of Rhode Island (FEMA-4107-DR), dated 03/22/2013. Incident: Severe winter storm and...

  1. 76 FR 61131 - Rhode Island Disaster #RI-00008

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-03

    ... ADMINISTRATION Rhode Island Disaster RI-00008 AGENCY: U.S. Small Business Administration. ACTION: Notice. SUMMARY: This is a notice of an Administrative declaration of a disaster for the State of Rhode Island dated 09... Island: Bristol, Kent. Connecticut: Windham. Massachusetts: Bristol, Norfolk, Worcester. The...

  2. Genetics Home Reference: Léri-Weill dyschondrosteosis

    MedlinePlus

    ... arched palate. Léri-Weill dyschondrosteosis occurs in both males and females, although its signs and symptoms tend to be more severe in females. Researchers believe that the more severe features may result from hormonal differences. Related Information What does it mean if a ...

  3. Structure of RiVax: a recombinant ricin vaccine

    SciTech Connect

    Legler, Patricia M.; Brey, Robert N.; Smallshaw, Joan E.; Vitetta, Ellen S.; Millard, Charles B.

    2011-09-01

    The X-ray crystal structure (at 2.1 Å resolution) of an immunogen under development as part of a ricin vaccine for humans is presented and structure-based analysis of the results was conducted with respect to related proteins and the known determinants for inducing or suppressing the protective immune response. RiVax is a recombinant protein that is currently under clinical development as part of a human vaccine to protect against ricin poisoning. RiVax includes ricin A-chain (RTA) residues 1–267 with two intentional amino-acid substitutions, V76M and Y80A, aimed at reducing toxicity. Here, the crystal structure of RiVax was solved to 2.1 Å resolution and it was shown that it is superposable with that of the ricin toxin A-chain from Ricinus communis with a root-mean-square deviation of 0.6 Å over 258 C{sup α} atoms. The RiVax structure is also compared with the recently determined structure of another potential ricin-vaccine immunogen, RTA 1–33/44–198 R48C/T77C. Finally, the locations and solvent-exposure of two toxin-neutralizing B-cell epitopes were examined and it was found that these epitopes are within or near regions predicted to be involved in catalysis. The results demonstrate the composition of the RiVax clinical material and will guide ongoing protein-engineering strategies to develop improved immunogens.

  4. A new fission-fragment detector to complement the CACTUS-SiRi setup at the Oslo Cyclotron Laboratory

    NASA Astrophysics Data System (ADS)

    Tornyi, T. G.; Görgen, A.; Guttormsen, M.; Larsen, A. C.; Siem, S.; Krasznahorkay, A.; Csige, L.

    2014-02-01

    An array of Parallel Plate Avalanche Counters (PPAC) for the detection of heavy ions has been developed. The new device, NIFF (Nuclear Instrument for Fission Fragments), consists of four individual detectors and covers 60% of 2π. It was designed to be used in conjunction with the SiRi array of ΔE-E silicon telescopes for light charged particles and fits into the CACTUS array of 28 large-volume NaI scintillation detectors at the Oslo Cyclotron Laboratory. The low-pressure gas-filled PPACs are sensitive for the detection of fission fragments, but are insensitive to scattered beam particles of light ions or light-ion ejectiles. The PPAC detectors of NIFF have good time resolution and can be used either to select or to veto fission events in in-beam experiments with light-ion beams and actinide targets. The powerful combination of SiRi, CACTUS, and NIFF provides new research opportunities for the study of nuclear structure and nuclear reactions in the actinide region. The new setup is particularly well suited to study the competition of fission and γ decay as a function of excitation energy.

  5. Crystal Structure of the 30S Ribosomal Subunit from Thermus Thermophilus. Purification, Crystallization and Structure Determination

    SciTech Connect

    Clemons, William M.; Brodersen, Ditlev E.; McCutcheonn, John P.; May, Joanna L.C.; Carter, Andrew P.; Morgan-Warren, Robert J.; Wimberly, Brian T.; Ramakrishnan, Venki

    2009-10-07

    We describe the crystallization and structure determination of the 30 S ribosomal subunit from Thermus thermophilus. Previous reports of crystals that diffracted to 10 {angstrom} resolution were used as a starting point to improve the quality of the diffraction. Eventually, ideas such as the addition of substrates or factors to eliminate conformational heterogeneity proved less important than attention to detail in yielding crystals that diffracted beyond 3 {angstrom} resolution. Despite improvements in technology and methodology in the last decade, the structure determination of the 30 S subunit presented some very challenging technical problems because of the size of the asymmetric unit, crystal variability and sensitivity to radiation damage. Some steps that were useful for determination of the atomic structure were: the use of anomalous scattering from the LIII edges of osmium and lutetium to obtain the necessary phasing signal; the use of tunable, third-generation synchrotron sources to obtain data of reasonable quality at high resolution; collection of derivative data precisely about a mirror plane to preserve small anomalous differences between Bijvoet mates despite extensive radiation damage and multi-crystal scaling; the pre-screening of crystals to ensure quality, isomorphism and the efficient use of scarce third-generation synchrotron time; pre-incubation of crystals in cobalt hexaammine to ensure isomorphism with other derivatives; and finally, the placement of proteins whose structures had been previously solved in isolation, in conjunction with biochemical data on protein-RNA interactions, to map out the architecture of the 30 S subunit prior to the construction of a detailed atomic-resolution model.

  6. RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis

    PubMed Central

    Goto, Simon; Kato, Shingo; Kimura, Takatsugu; Muto, Akira; Himeno, Hyouta

    2011-01-01

    RsgA is a 30S ribosomal subunit-binding GTPase with an unknown function, shortage of which impairs maturation of the 30S subunit. We identified multiple gain-of-function mutants of Escherichia coli rbfA, the gene for a ribosome-binding factor, that suppress defects in growth and maturation of the 30S subunit of an rsgA-null strain. These mutations promote spontaneous release of RbfA from the 30S subunit, indicating that cellular disorders upon depletion of RsgA are due to prolonged retention of RbfA on the 30S subunit. We also found that RsgA enhances release of RbfA from the mature 30S subunit in a GTP-dependent manner but not from a precursor form of the 30S subunit. These findings indicate that the function of RsgA is to release RbfA from the 30S subunit during a late stage of ribosome biosynthesis. This is the first example of the action of a GTPase on the bacterial ribosome assembly described at the molecular level. PMID:21102555

  7. Does power indicate capacity? 30-s Wingate anaerobic test vs. maximal accumulated O2 deficit.

    PubMed

    Minahan, C; Chia, M; Inbar, O

    2007-10-01

    The purpose of this study was to evaluate the relationship between anaerobic power and capacity. Seven men and seven women performed a 30-s Wingate Anaerobic Test on a cycle ergometer to determine peak power, mean power, and the fatigue index. Subjects also cycled at a work rate predicted to elicit 120 % of peak oxygen uptake to exhaustion to determine the maximal accumulated O (2) deficit. Peak power and the maximal accumulated O (2) deficit were significantly correlated (r = 0.782, p = 0.001). However, when the absolute difference in exercise values between groups (men and women) was held constant using a partial correlation, the relationship diminished (r = 0.531, p = 0.062). In contrast, we observed a significant correlation between fatigue index and the maximal accumulated O (2) deficit when controlling for gender (r = - 0.597, p = 0.024) and the relationship remained significant when values were expressed relative to active muscle mass. A higher anaerobic power does not indicate a greater anaerobic capacity. Furthermore, we suggest that the ability to maintain power output during a 30-s cycle sprint is related to anaerobic capacity.

  8. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... ANCHORAGE REGULATIONS Anchorage Grounds § 110.145 Narragansett Bay, R.I. (a) East Passage—(1) Anchorage A... following coordinates: Northeast Corner: 41°29.484′ N, 071°19.975′ W Northwest Corner: 41°29.484′ N, 071°20... vessel extend into the recommended vessel route in the East Passage of Narragansett Bay, a securite...

  9. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... ANCHORAGE REGULATIONS Anchorage Grounds § 110.145 Narragansett Bay, R.I. (a) East Passage—(1) Anchorage A...: 41°29.484′ N, 071°19.975′ W Northwest Corner: 41°29.484′ N, 071°20.578′ W Southwest Corner: 41°29.005... vessel route in the East Passage of Narragansett Bay, a securite call notifying mariners of the...

  10. 33 CFR 110.145 - Narragansett Bay, R.I.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... ANCHORAGE REGULATIONS Anchorage Grounds § 110.145 Narragansett Bay, R.I. (a) East Passage—(1) Anchorage A... following coordinates: Northeast Corner: 41°29.484′ N, 071°19.975′ W Northwest Corner: 41°29.484′ N, 071°20... vessel extend into the recommended vessel route in the East Passage of Narragansett Bay, a securite...

  11. Quarry residuals RI/FS scoping document. [Weldon Spring quarry

    SciTech Connect

    Not Available

    1991-10-01

    The purpose of this document is to serve as a planning tool for the implementation of the Quarry Residual Remedial Investigation/Feasibility Study (RI/FS) process and to provide direct input to revising and updating the 1988 Work Plan for the Weldon Spring Site Remedial Action Project (WSSRAP) Remedial Investigation/Feasibility Study-Environmental Impact Statement for the Weldon Spring Site (RI/FS-EIS) (Peterson et al. 1988) for this effort. The scoping process is intended to outline the tasks necessary to develop and implement activities in compliance with the Comprehensive Environmental Response, Compensation and Liability Act-National Environmental Policy Act (CERCLA-NEPA) process from detailed planning through the appropriate decision document. In addition to scoping the entire process, this document will serve as the primary tool for planning and accomplishing all activities to be developed in the Quarry Residual RI/FS Work Plan. Subsequent tasks are difficult to plan at this time. 10 refs., 5 figs., 5 tabs.

  12. OROCHI experiment: Laser spectroscopy of RI atoms in superfluid helium for measurements of nuclear spins and electromagnetic moments

    NASA Astrophysics Data System (ADS)

    Furukawa, Takeshi

    2014-09-01

    We have been developing a new laser spectroscopy technique named as OROCHI (Optical RI-atom Observation in Condensed Helium as Ion-catcher) for measurements of nuclear spins and electromagnetic moments of low yield exotic radioisotopes (RIs). In this technique, we use superfluid helium (He II) liquid as a stopping material of RI beam in which in-situ laser spectroscopy of the RI atoms stopped in He II is carried out. The characteristic features of He II, i.e. high trapping efficiency of He II liquid for accelerated ion beams and the characteristics of atomic spectra in He II, enables us to measure the nuclear spins and moments of the extremely low yield RIs. So far, we have demonstrated the feasibility of our method to deduce the nuclear spins and moments with stable Rb, Cs, Ag and Au isotopes supplied into He II by laser sputtering technique. In addition, we have also succeeded in observing laser-radiowave/microwave double resonance signals of 84-87Rb atoms injected into He II as energetic ion beam. In these on-line experiment, the 84-87Rb isotope beams (intensity: up to 105 particles/s) were provided with RIPS beamline in RIKEN, and introduced into He II filled in a cryostat. Special care was taken in controlling the stopping position of injected Rb isotopes. Aluminum energy degraders of varied thickness from 0 to 0.8 mm were placed upstream of the beam injection window of the He II cryostat for optimizing the stopping position The 84-87Rb atoms stopped and then neutralized in He II were optically pumped and polarized with circularly polarized pumping laser light whose wavelength were tuned to 780 nm, D1 absorption line of Rb atoms in He II. The polarized atoms were subjected to irradiation of radiowave or microwave, and then we demonstrated the double resonance spectroscopy for observing the Zeeman transition of 84-87Rb atoms and the hyperfine transition of 87Rb, respectively In this presentation we will show the details of OROCHI technique and the present

  13. Analysis of r-protein and RNA conformation of 30S subunit intermediates in bacteria

    PubMed Central

    Napper, Nathan; Culver, Gloria M.

    2015-01-01

    The ribosome is a large macromolecular complex that must be assembled efficiently and accurately for the viability of all organisms. In bacteria, this process must be robust and tunable to support life in diverse conditions from the ice of arctic glaciers to thermal hot springs. Assembly of the Small ribosomal SUbunit (SSU) of Escherichia coli has been extensively studied and is highly temperature-dependent. However, a lack of data on SSU assembly for other bacteria is problematic given the importance of the ribosome in bacterial physiology. To broaden the understanding of how optimal growth temperature may affect SSU assembly, in vitro SSU assembly of two thermophilic bacteria, Geobacillus kaustophilus and Thermus thermophilus, was compared with that of E. coli. Using these phylogenetically, morphologically, and environmentally diverse bacteria, we show that SSU assembly is highly temperature-dependent and efficient SSU assembly occurs at different temperatures for each organism. Surprisingly, the assembly landscape is characterized by at least two distinct intermediate populations in the organisms tested. This novel, second intermediate, is formed in the presence of the full complement of r-proteins, unlike the previously observed RI* particle formed in the absence of late-binding r-proteins in E. coli. This work reveals multiple distinct intermediate populations are present during SSU assembly in vitro for several bacteria, yielding insights into RNP formation and possible antimicrobial development toward this common SSU target. PMID:25999315

  14. Secondary structures of proteins from the 30S subunit of the Escherichia coli ribosome.

    PubMed

    Dzionara, M; Robinson, S M; Wittmann-Liebold, B

    1977-08-01

    The secondary structures of the proteins S4, S6, S8, S9, S12, S13, S15, S16, S18, S20 and S21 from the subunit of the E. coli ribosome were predicted according to four different methods. From the resultant diagrams indicating regions of helix, turn, extended structure and random coil, average values for the respective secondary structures could be calculated for each protein. Using the known relative distances for residues in the helical, turn and sheet or allowed random conformations, estimates are made of the maximum possible lengths of the proteins in order to correlate these with results obtained from antibody binding studies to the 30S subunit as determined by electron microscopy. The influence of amino acid changes on the predicted secondary structures of proteins from a few selected mutants was studied. The altered residues tend to be structurally conservative or to induce only minimal local changes.

  15. 77 FR 5581 - Submission for Review: Financial Resources Questionnaire (RI 34-1, RI 34-17) and Notice of Amount...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-03

    ... Resources Questionnaire (RI 34-1), Financial Resources Questionnaire--Federal Employees' Group Life Insurance Premiums Underpaid (RI 34-17), collects detailed financial information for use by OPM to determine... published in the Federal Register on August 16, 2011 at Volume 76 FR 50770 allowing for a 60-day...

  16. 76 FR 44051 - Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-07-22

    ... MANAGEMENT Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147 AGENCY: U... collection request (ICR) 3206-0197, Verification of Who is Getting Payments. As required by the Paperwork.... 104-106), OPM is soliciting comments for this collection. The Office of Management and Budget...

  17. 76 FR 81999 - Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-29

    ... published in the Federal Register on July 22, 2011 at Volume 76 FR 44051 allowing for a 60-day public... MANAGEMENT Submission for Review: Verification of Who Is Getting Payments, RI 38-107 and RI 38-147 AGENCY: U... collection request (ICR) 3206-0197, Verification of Who is Getting Payments. As required by the...

  18. Development of a beam line for radio-isotope production at the KOMAC

    NASA Astrophysics Data System (ADS)

    Kim, Han-Sung

    2016-09-01

    A new beam line of the 100-MeV proton linac at the KOMAC (Korea Multi-purpose Accelerator Complex), aiming for RI (radioisotope) production has been constructed reflecting the increasing demands for various RIs (radioisotopes), such as Sr-82 and Cu-67 for medical applications. Proton beam with beam energy of 100 MeV and an average current of 0.6 mA is directed to the 100-mm-diameter production target through a beam window made of aluminum-beryllium alloy. Major components of the newly-installed beam line include electromagnets for bending and focusing, beam diagnostic systems such as a BPM (beam position monitor) and a BCM (beam current monitor), and a vacuum pumping system based on an ion pump. In this paper, the design features and the installation of the RI-production beam line at the KOMAC are given.

  19. Improving Forecast Skill by Assimilation of AIRS Cloud Cleared Radiances RiCC

    NASA Technical Reports Server (NTRS)

    Susskind, Joel; Rosenberg, Robert I.; Iredell, Lena

    2015-01-01

    ECMWF, NCEP, and GMAO routinely assimilate radiosonde and other in-situ observations along with satellite IR and MW Sounder radiance observations. NCEP and GMAO use the NCEP GSI Data Assimilation System (DAS).GSI DAS assimilates AIRS, CrIS, IASI channel radiances Ri on a channel-by-channel, case-by-case basis, only for those channels i thought to be unaffected by cloud cover. This test excludes Ri for most tropospheric sounding channels under partial cloud cover conditions. AIRS Version-6 RiCC is a derived quantity representative of what AIRS channel i would have seen if the AIRS FOR were cloud free. All values of RiCC have case-by-case error estimates RiCC associated with them. Our experiments present to the GSI QCd values of AIRS RiCC in place of AIRS Ri observations. GSI DAS assimilates only those values of RiCC it thinks are cloud free. This potentially allows for better coverage of assimilated QCd values of RiCC as compared to Ri.

  20. Coordinates and RI photometry of Large Magellanic Cloud carbon stars

    SciTech Connect

    Costa, E. )

    1990-07-01

    Coordinates and photoelectric RI magnitudes are given for 86 carbon stars discovered by Blanco et al. in four selected 0.12 deg sq areas of the LMC. A comparison with the photometry of Blanco et al. for carbon stars in three different fields of the LMC suggests that the luminosity distribution of the carbon stars may change from center to center in the LMC. This possibility is supported by the differences in the mean I magnitude of the carbon stars detected between the four areas studied. 16 refs.

  1. Monitoring of Eco RI-catalyzed cleavage reaction of fluorescent-labeled heterochiral DNA.

    PubMed

    Urata, Hidehito; Tamaki, Chihiro; Matsuno, Miki; Wada, Shun-Ichi; Akagi, Masao

    2007-01-01

    We have found the unusual reactivity of a heterochiral oligodeoxynucleotide toward restriction endonuclease Eco RI. To conduct the kinetic analysis of the reaction, fluorescent-labeled single-stranded oligodeoxynucleotide molecular beacons were designed and synthesized. The beacons showed a remarkable fluorescence response by addition of Eco RI. The results promise that the beacon could be an effective tool for the kinetic analysis of Eco RI-catalyzed cleavage reaction of the heterochiral oligodeoxynucleotide.

  2. Switching off the tackiness of a nanocomposite adhesive in 30 s via infrared sintering.

    PubMed

    Gurney, Robert S; Dupin, Damien; Nunes, Juliana S; Ouzineb, Keltoum; Siband, Elodie; Asua, José M; Armes, Steven P; Keddie, Joseph L

    2012-10-24

    Soft adhesives require an optimum balance of viscous and elastic properties. Adhesion is poor when the material is either too solidlike or too liquidlike. The ability to switch tack adhesion off at a desired time has many applications, such as in recycling, disassembly of electronics, and painless removal of wound dressings. Here, we describe a new strategy to switch off the tack adhesion in a model nanocomposite adhesive in which temperature is the trigger. The nanocomposite comprises hard methacrylic nanoparticles blended with a colloidal dispersion of soft copolymer particles. At relatively low volume fractions, the nanoparticles (50 nm diameter) accumulate near the film surface, where they pack around the larger soft particles (270 nm). The viscoelasticity of the nanocomposite is adjusted via the nanoparticle concentration. When the nanocomposite is heated above the glass transition temperature of the nanoparticles (T(g) = 130 °C), they sinter together to create a rigid network that raises the elastic modulus at room temperature. The tackiness is switched off. Intense infrared radiation is used to heat the nanocomposites, leading to a fast temperature rise. Tack adhesion is switched off within 30 s in optimized compositions. These one-way switchable adhesives have the potential to be patterned through localized heating. PMID:22974179

  3. Switching off the tackiness of a nanocomposite adhesive in 30 s via infrared sintering.

    PubMed

    Gurney, Robert S; Dupin, Damien; Nunes, Juliana S; Ouzineb, Keltoum; Siband, Elodie; Asua, José M; Armes, Steven P; Keddie, Joseph L

    2012-10-24

    Soft adhesives require an optimum balance of viscous and elastic properties. Adhesion is poor when the material is either too solidlike or too liquidlike. The ability to switch tack adhesion off at a desired time has many applications, such as in recycling, disassembly of electronics, and painless removal of wound dressings. Here, we describe a new strategy to switch off the tack adhesion in a model nanocomposite adhesive in which temperature is the trigger. The nanocomposite comprises hard methacrylic nanoparticles blended with a colloidal dispersion of soft copolymer particles. At relatively low volume fractions, the nanoparticles (50 nm diameter) accumulate near the film surface, where they pack around the larger soft particles (270 nm). The viscoelasticity of the nanocomposite is adjusted via the nanoparticle concentration. When the nanocomposite is heated above the glass transition temperature of the nanoparticles (T(g) = 130 °C), they sinter together to create a rigid network that raises the elastic modulus at room temperature. The tackiness is switched off. Intense infrared radiation is used to heat the nanocomposites, leading to a fast temperature rise. Tack adhesion is switched off within 30 s in optimized compositions. These one-way switchable adhesives have the potential to be patterned through localized heating.

  4. Assembly of the 30S ribosomal subunit: positioning ribosomal protein S13 in the S7 assembly branch.

    PubMed

    Grondek, Joel F; Culver, Gloria M

    2004-12-01

    Studies of Escherichia coli 30S ribosomal subunit assembly have revealed a hierarchical and cooperative association of ribosomal proteins with 16S ribosomal RNA; these results have been used to compile an in vitro 30S subunit assembly map. In single protein addition and omission studies, ribosomal protein S13 was shown to be dependent on the prior association of ribosomal protein S20 for binding to the ribonucleoprotein particle. While the overwhelming majority of interactions revealed in the assembly map are consistent with additional data, the dependency of S13 on S20 is not. Structural studies position S13 in the head of the 30S subunit > 100 A away from S20, which resides near the bottom of the body of the 30S subunit. All of the proteins that reside in the head of the 30S subunit, except S13, have been shown to be part of the S7 assembly branch, that is, they all depend on S7 for association with the assembling 30S subunit. Given these observations, the assembly requirements for S13 were investigated using base-specific chemical footprinting and primer extension analysis. These studies reveal that S13 can bind to 16S rRNA in the presence of S7, but not S20. Additionally, interaction between S13 and other members of the S7 assembly branch have been observed. These results link S13 to the 3' major domain family of proteins, and the S7 assembly branch, placing S13 in a new location in the 30S subunit assembly map where its position is in accordance with much biochemical and structural data.

  5. Fragment molecular orbital calculation using the RI-MP2 method

    NASA Astrophysics Data System (ADS)

    Ishikawa, Takeshi; Kuwata, Kazuo

    2009-05-01

    The resolution of the identity second-order Møller-Plesset perturbation theory (RI-MP2) was introduced into the fragment molecular orbital (FMO) method, where the program of the RI-MP2 method was newly developed. After some test calculations with a small peptide, the performance of the RI-MP2 method with the FMO scheme was demonstrated for two biomolecular systems: the human immunodeficiency virus type 1 protease with the lopinavir molecule, and the prion protein with the GN8 molecule. These calculations showed the great advantage of FMO calculations using the RI-MP2 method over ordinary FMO calculations.

  6. Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits.

    PubMed

    Fredrick, K; Dunny, G M; Noller, H F

    2000-05-01

    Ribosomal protein S7 nucleates folding of the 16 S rRNA 3' major domain, which ultimately forms the head of the 30 S ribosomal subunit. Recent crystal structures indicate that S7 lies on the interface side of the 30 S subunit, near the tRNA binding sites of the ribosome. To map the functional surface of S7, we have tagged the protein with a Protein Kinase A recognition site and engineered alanine substitutions that target each exposed, conserved residue. We have also deleted conserved features of S7, using its structure to guide our design. By radiolabeling the tag sequence using Protein Kinase A, we are able to track the partitioning of each mutant protein into 30 S, 70 S, and polyribosome fractions in vivo. Overexpression of S7 confers a growth defect, and we observe a striking correlation between this phenotype and proficiency in 30 S subunit assembly among our collection of mutants. We find that the side chain of K35 is required for efficient assembly of S7 into 30 S subunits in vivo, whereas those of at least 17 other conserved exposed residues are not required. In addition, an S7 derivative lacking the N-terminal 17 residues causes ribosomes to accumulate on mRNA to abnormally high levels, indicating that our approach can yield interesting mutant ribosomes.

  7. Beam-Beam Interactions

    SciTech Connect

    Sramek, Christopher

    2003-09-05

    At the interaction point of a particle accelerator, various phenomena occur which are known as beam-beam effects. Incident bunches of electrons (or positrons) experience strong electromagnetic fields from the opposing bunches, which leads to electron deflection, beamstrahlung and the creation of electron/positron pairs and hadrons due to two-photon exchange. In addition, the beams experience a ''pinch effect'' which focuses each beam and results in either a reduction or expansion of their vertical size. Finally, if a beam's disruption parameter is too large, the beam can develop a sinusoidal distortion, or two-stream (kink) instability. This project simulated and studied these effects as they relate to luminosity, deflection angles and energy loss in order to optimize beam parameters for the Next Linear Collider (NLC). Using the simulation program Guinea-Pig, luminosity, deflection angle and beam energy data was acquired for different levels of beam offset and distortion. Standard deflection curves and luminosity plots agreed with theoretical models but also made clear the difficulties of e-e- feedback. Simulations emphasizing kink instability in modulated and straight beam collisions followed qualitative behavioral predictions and roughly fit recent analytic calculations. Finally, a study of e-e- collisions under design constraints for the NLC provided new estimates of how luminosity, beamstrahlung energy loss, upsilon parameter and deflection curve width scale with beam spotsizes.

  8. BEAM-BEAM 2003 SUMMARY.

    SciTech Connect

    FISCHER,W.SEN,T.

    2003-05-19

    This paper summarizes the presentations and discussions of the Beam-Beam'03 workshop, held in Montauk, Long Island, from May 19 to 23, 2003. Presentations and discussions focused on halo generation from beam-beam interactions; beam-beam limits, especially coherent limits and their effects on existing and future hadron colliders; beam-beam compensation techniques, particularly for long-range interactions; and beam-beam study tools in theory, simulation, and experiment.

  9. Ethanol Inhibits High-Affinity Immunoglobulin E Receptor (FcεRI) Signaling in Mast Cells by Suppressing the Function of FcεRI-Cholesterol Signalosome.

    PubMed

    Draberova, Lubica; Paulenda, Tomas; Halova, Ivana; Potuckova, Lucie; Bugajev, Viktor; Bambouskova, Monika; Tumova, Magda; Draber, Petr

    2015-01-01

    Ethanol has multiple effects on biochemical events in a variety of cell types, including the high-affinity immunoglobulin E receptor (FcεRI) signaling in antigen-activated mast cells. However, the underlying molecular mechanism remains unknown. To get better understanding of the effect of ethanol on FcεRI-mediated signaling we examined the effect of short-term treatment with non-toxic concentrations of ethanol on FcεRI signaling events in mouse bone marrow-derived mast cells. We found that 15 min exposure to ethanol inhibited antigen-induced degranulation, calcium mobilization, expression of proinflammatory cytokine genes (tumor necrosis factor-α, interleukin-6, and interleukin-13), and formation of reactive oxygen species in a dose-dependent manner. Removal of cellular cholesterol with methyl-β-cyclodextrin had a similar effect and potentiated some of the inhibitory effects of ethanol. In contrast, exposure of the cells to cholesterol-saturated methyl-β-cyclodextrin abolished in part the inhibitory effect of ethanol on calcium response and production of reactive oxygen species, supporting lipid-centric theories of ethanol action on the earliest stages of mast cell signaling. Further studies showed that exposure to ethanol and/or removal of cholesterol inhibited early FcεRI activation events, including tyrosine phosphorylation of the FcεRI β and γ subunits, SYK kinases, LAT adaptor protein, phospholipase Cγ, STAT5, and AKT and internalization of aggregated FcεRI. Interestingly, ethanol alone, and particularly in combination with methyl-β-cyclodextrin, enhanced phosphorylation of negative regulatory tyrosine 507 of LYN kinase. Finally, we found that ethanol reduced passive cutaneous anaphylactic reaction in mice, suggesting that ethanol also inhibits FcεRI signaling under in vivo conditions. The combined data indicate that ethanol interferes with early antigen-induced signaling events in mast cells by suppressing the function of FcεRI

  10. The Humanities and Interrater Reliability: A Response to R. Stephen RiCharde

    ERIC Educational Resources Information Center

    Flick, Arend

    2009-01-01

    This article presents the author's critique of R. Stephen RiCharde's argument in his essay on the humanities and interrater reliability in the July-August 2008 issue of "Assessment Update." RiCharde suggests that the humanities' historical commitment to a dialectical pedagogy, a "nonlinear" process that values disagreement and debate, is at odds…

  11. Draft Genome Sequence of the Shellfish Larval Probiotic Bacillus pumilus RI06-95.

    PubMed

    Hamblin, Meagan; Spinard, Edward; Gomez-Chiarri, Marta; Nelson, David R; Rowley, David C

    2015-09-03

    Bacillus pumilus RI06-95 is a marine bacterium isolated in Narragansett, Rhode Island, which has shown probiotic activity against marine pathogens in larval shellfish. We report the genome of B. pumilus RI06-95, which provides insight into the microbe's probiotic ability and may be used in future studies of the probiotic mechanism.

  12. 78 FR 55124 - Submission for Review: Death Benefit Payment Rollover Election, RI 94-7

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-09

    ... MANAGEMENT Submission for Review: Death Benefit Payment Rollover Election, RI 94-7 AGENCY: U.S. Office of... (ICR) 3206-0218, Death Benefit Payment Rollover Election, RI 94-7. As required by the Paperwork... Services, Office of Personnel Management. Title: Death Benefit Payment Rollover Election. OMB:...

  13. 77 FR 66190 - Submission for Review: Annuitant's Report of Earned Income, RI 30-2

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-02

    ... Volume 77 FR 34414 allowing for a 60-day public comment period. No comments were received for this... MANAGEMENT Submission for Review: Annuitant's Report of Earned Income, RI 30-2 AGENCY: U.S. Office of... Income, RI 30-2. As required by the Paperwork Reduction Act of 1995, (Pub. L. 104-13, 44 U.S.C....

  14. 77 FR 43514 - Anchorage Regulations; Narragansett Bay and Rhode Island Sound, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-25

    ... Rhode Island Sound, RI,'' in the Federal Register (76 FR 15246). We received nine comments on the... Sound, RI AGENCY: Coast Guard, DHS. ACTION: Final rule. SUMMARY: The Coast Guard is removing an obsolete... Island Sound south of Brenton Point, Rhode Island, for use by vessels waiting to enter Narragansett...

  15. PPARA intron polymorphism associated with power performance in 30-s anaerobic Wingate Test.

    PubMed

    Petr, Miroslav; Stastny, Petr; Št'astný, Petr; Pecha, Ondřej; Šteffl, Michal; Šeda, Ondřej; Kohlíková, Eva

    2014-01-01

    To date, polymorphisms in several genes have been associated with a strength/power performance including alpha 3 actinin, ciliary neurotrophic factor, vitamin D receptor, or angiotensin I converting enzyme, underlining the importance of genetic component of the multifactorial strength/power-related phenotypes. The single nucleotide variation in peroxisome proliferator-activated receptor alpha gene (PPARA) intron 7 G/C (rs4253778; g.46630634G>C) has been repeatedly found to play a significant role in response to different types of physical activity. We investigated the effect of PPARA intron 7 G/C polymorphism specifically on anaerobic power output in a group of 77 elite male Czech ice hockey players (18-36 y). We determined the relative peak power per body weight (Pmax.kg(-1)) and relative peak power per fat free mass (W.kg(-1)FFM) during the 30-second Wingate Test (WT30) on bicycle ergometer (Monark 894E Peak bike, MONARK, Sweden). All WT30s were performed during the hockey season. Overall genotype frequencies were 50.6% GG homozygotes, 40.3% CG heterozygotes, and 9.1% CC homozygotes. We found statistically significant differences in Pmax.kg(-1) and marginally significant differences in Pmax.kg(-1)FFM values in WT30 between carriers and non-carriers for C allele (14.6 ± 0.2 vs. 13.9 ± 0.3 W.kg(-1) and 15.8 ± 0.2 vs. 15.2 ± 0.3 W.kg(-1)FFM, P = 0.036 and 0.12, respectively). Furthermore, Pmax.kg(-1)FFM strongly positively correlated with the body weight only in individuals with GG genotypes (R = 0.55; p<0.001). Our results indicate that PPARA 7C carriers exhibited higher speed strength measures in WT30. We hypothesize that C allele carriers within the cohort of trained individuals may possess a metabolic advantage towards anaerobic metabolism.

  16. Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins.

    PubMed

    Culver, G M; Noller, H F

    1999-06-01

    Previous studies have shown that the 30S ribosomal subunit of Escherichia coli can be reconstituted in vitro from individually purified ribosomal proteins and 16S ribosomal RNA, which were isolated from natural 30S subunits. We have developed a 30S subunit reconstitution system that uses only recombinant ribosomal protein components. The genes encoding E. coli ribosomal proteins S2-S21 were cloned, and all twenty of the individual proteins were overexpressed and purified. Reconstitution, following standard procedures, using the complete set of recombinant proteins and purified 16S ribosomal RNA is highly inefficient. Efficient reconstitution of 30S subunits using these components requires sequential addition of proteins, following either the 30S subunit assembly map (Mizushima & Nomura, 1970, Nature 226:1214-1218; Held et al., 1974, J Biol Chem 249:3103-3111) or following the order of protein assembly predicted from in vitro assembly kinetics (Powers et al., 1993, J MoI Biol 232:362-374). In the first procedure, the proteins were divided into three groups, Group I (S4, S7, S8, S15, S17, and S20), Group II (S5, S6, S9, Sll, S12, S13, S16, S18, and S19), and Group III (S2, S3, S10, S14, and S21), which were sequentially added to 16S rRNA with a 20 min incubation at 42 degrees C following the addition of each group. In the second procedure, the proteins were divided into Group I (S4, S6, S11, S15, S16, S17, S18, and S20), Group II (S7, S8, S9, S13, and S19), Group II' (S5 and S12) and Group III (S2, S3, S10, S14, and S21). Similarly efficient reconstitution is observed whether the proteins are grouped according to the assembly map or according to the results of in vitro 30S subunit assembly kinetics. Although reconstitution of 30S subunits using the recombinant proteins is slightly less efficient than reconstitution using a mixture of total proteins isolated from 30S subunits, it is much more efficient than reconstitution using proteins that were individually isolated

  17. riDOM, a cell-penetrating peptide. Interaction with DNA and heparan sulfate.

    PubMed

    Québatte, Gabriela; Kitas, Eric; Seelig, Joachim

    2013-09-19

    DNA condensation in the presence of polycationic molecules is a well-known phenomenon exploited in gene delivery. riDOM (retro-inverso dioleoylmelittin) is a cell-penetrating peptide with excellent transporter properties for DNA. It is a chimeric molecule where ri-melittin is fused to dioleoylphosphoethanolamine. The physical-chemical properties of riDOM in solution and in the presence of DNA and heparan sulfate were investigated with spectroscopic and thermodynamic methods. Dynamic light scattering shows that riDOM in solution aggregates to well-defined nanoparticles with a diameter of ∼13 nm and a ζ-potential of 22 mV, composed of about 220-270 molecules. Binding of riDOM to DNA was studied with dynamic light scattering, ζ-potential measurements, and isothermal titration calorimetry and was compared with authentic melittin-DNA interaction. riDOM binds tightly to DNA with a microscopic binding constant of 5 × 10(7) M(-1) and a stoichiometry of 12 riDOM per 10 DNA base pairs. In the complex the DNA double strand is completely shielded by the more hydrophobic riDOM molecules. Authentic melittin binds to DNA with a much lower binding constant of 5 × 10(6) M(-1) and lower stoichiometry of 5 melittin per 10 DNA base pairs. The binding enthalpies for riDOM and melittin are small and the binding reactions are entropy-driven. Sulfated glycosaminoglycans such as heparan sulfate are also linear molecules with a negative charge. riDOM binding to heparan sulfate on cell surfaces can therefore interfere with DNA-riDOM binding. riDOM-heparan sulfate complex formation was characterized by isothermal titration calorimetry and spectroscopic methods. The binding constant of riDOM for heparan sulfate is K ≈ 2 × 10(6) M(-1). Authentic melittin has a similar binding constant but riDOM shows a 3-fold higher packing density on heparan sulfate than the distinctly smaller melittin.

  18. Confinement and transport in EC heated RI-mode discharges in TEXTOR

    NASA Astrophysics Data System (ADS)

    Hogeweij, G. M. D.; Dumortier, P.; Van Eester, D.; Hoekzema, F. A.; Jaspers, R. J. E.; Kalupin, D.; Koslowski, H. R.; Messiaen, A.; Polman, R. W.; Schüller, F. C.; Unterberg, B.; Vervier, M.; Van Wassenhove, G.; Westerhof, E.

    2004-04-01

    This paper reports on experiments in TEXTOR with electron cyclotron resonance heating (ECRH) of radiatively improved (RI) mode discharges. With ECRH the energy content of RI-mode discharges can be increased without the normally observed power degradation in confinement time. The experiments are described and the effects of ECRH on global confinement and local plasma parameters of RI-mode discharges are discussed; the favourable scaling of energy content is due to a zone of low electron thermal transport just outside the sawtooth inversion radius. Moreover, the heating effect of ECRH in the RI-mode is compared with the effect in L-mode; this comparison sheds some light on the physics of electron thermal transport in RI-mode discharges.

  19. Developmental Trajectories of Marijuana Use among Men: Examining Linkages with Criminal Behavior and Psychopathic Features into the Mid-30s

    PubMed Central

    Pardini, Dustin; Bechtold, Jordan; Loeber, Rolf; White, Helene

    2015-01-01

    Objectives Examine whether young men who chronically use marijuana are at risk for engaging in drug-related and non-drug-related criminal offending and exhibiting psychopathic personality features in their mid-30s. Methods Patterns of marijuana use were delineated in a sample of predominately Black and White young men from adolescence to the mid-20s using latent class growth curve analysis. Self-report and official records of criminal offending and psychopathic personality features were assessed in the mid-30s. Analyses controlled for multiple factors indicative of a preexisting antisocial lifestyle and co-occurring use of other substances and tested for moderation by race. Results Four latent marijuana trajectory groups were identified: chronic high, adolescence-limited, late increasing, and low/nonusers. Relative to low/nonusers, chronic high and late increasing marijuana users exhibited more adult psychopathic features and were more likely to engage in drug-related offending during their mid-30s. Adolescence-limited users were similar to low/nonusers in terms of psychopathic features but were more likely to be arrested for drug-related crimes. No trajectory group differences were found for violence or theft, and the group differences were not moderated by race. Conclusions Young men who engage in chronic marijuana use from adolescence into their 20s are at increased risk for exhibiting psychopathic features, dealing drugs, and enduring drug-related legal problems in their mid-30s relative to men who remain abstinent or use infrequently. PMID:26568641

  20. Positions of proteins S14, S18 and S20 in the 30 S ribosomal subunit of Escherichia coli.

    PubMed

    Ramakrishnan, V; Capel, M; Kjeldgaard, M; Engelman, D M; Moore, P B

    1984-04-01

    A map of the 30 S ribosomal subunit is presented giving the positions of 15 of its 21 proteins. The components located in the map are S1, S3, S4, S5, S6, S7, S8, S9, S10, S11, S12, S14, S15, S18 and S20.

  1. Performance of Ion Surfing Rf-carpets for High-Energy RI Beam Gas Catcher

    NASA Astrophysics Data System (ADS)

    Arai, Fumiya; Ito, Yuta; Katayama, Ichiro; Schury, Peter; Sonoda, Tetsu; Wada, Michiharu; Wollnik, Hermann

    A new concept for the transport of ions in gas by means of a traveling potential wave super-imposed on an rf-carpet (RFC), known as ion surfing, has recently been proposed. We demonstrated, for the first time, the transport and extraction of K+ and Cs+ ions using a circular rf-carpet in high pressure He gas. An efficiency of nearly 100% was obtained . In addition, we compared an RFC of a fine pitch (0.16 mm) and the one of a rough pitch (0.32 mm). For higher pressure, the fine RFC was found to be better than the rough RFC.

  2. 33 CFR 167.100 - In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: General.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... Bay, RI, and Buzzards Bay, MA: General. 167.100 Section 167.100 Navigation and Navigable Waters COAST... approaches to Narragansett Bay, RI, and Buzzards Bay, MA: General. The traffic separation scheme in the approaches to Narragansett Bay, RI, and Buzzards Bay, MA, consists of four parts: Two precautionary areas...

  3. Remedial Investigation/Feasibility Study (RI/FS) process, elements and techniques guidance

    SciTech Connect

    Not Available

    1993-12-01

    This manual provides detailed guidance on Remedial Investigation/Feasibility Studies (RI/FSs) conducted pursuant to the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) at Department of Energy (DOE) facilities. The purpose of the RI/FS, to assess the risk posed by a hazardous waste site and to determine the best way to reduce that risk, and its structure (site characterization, risk assessment, screening and detailed analysis of alternatives, etc.) is defined in the National Oil and Hazardous Substances Pollution Contingency Plan (NCP) and further explained in the Environmental Protection Agency`s (EPA`s) Guidance for Conducting Remedial Investigations and Feasibility Studies Under CERCLA (Interim Final) 540/G-89/004, OSWER Directive 9355.3-01, October 1988. Though issued in 1988, the EPA guidance remains an excellent source of information on the conduct and structure of an RI/FS. This document makes use of supplemental RI/FS-related guidance that EPA has developed since its initial document was issued in 1988, incorporates practical lessons learned in more than 12 years of experience in CERCLA hazardous site remediation, and drawing on those lessons, introduces the Streamlined Approach For Environmental Restoration (SAFER), developed by DOE as a way to proceed quickly and efficiently through the RI/FS process at DOE facilities. Thus as its title implies, this guidance is intended to describe in detail the process and component elements of an RI/FS, as well as techniques to manage the RI/FS effectively.

  4. On the sequences ri, si, ti ∈ ℤ related to extended Euclidean algorithm and continued fractions

    NASA Astrophysics Data System (ADS)

    Muhammad, Khairun Nisak; Kamarulhaili, Hailiza

    2016-06-01

    The extended Euclidean Algorithm is a practical technique used in many cryptographic applications, where it computes the sequences ri, si, ti ∈ ℤ that always satisfy ri = si a+ tib. The integer ri is the remainder in the ith sequences. The sequences si and ti arising from the extended Euclidean algorithm are equal, up to sign, to the convergents of the continued fraction expansion of a/b. The values of (ri, si, ti) satisfy various properties which are used to solve the shortest vector problem in representing point multiplications in elliptic curves cryptography, namely the GLV (Gallant, Lambert & Vanstone) integer decomposition method and the ISD (integer sub decomposition) method. This paper is to extend the proof for each of the existing properties on (ri, si, ti). We also generate new properties which are relevant to the sequences ri, si, ti ∈ ℤ. The concepts of Euclidean algorithm, extended Euclidean algorithm and continued fractions are intertwined and the properties related to these concepts are proved. These properties together with the existing properties of the sequence (ri, si, ti) are regarded as part and parcel of the building blocks of a new generation of an efficient cryptographic protocol.

  5. Gamma Putty dosimetric studies in electron beam.

    PubMed

    Gloi, Aime M

    2016-01-01

    Traditionally, lead has been used for field shaping in megavoltage electron beams in radiation therapy. In this study, we analyze the dosimetric parameters of a nontoxic, high atomic number (Z = 83), bismuth-loaded material called Gamma Putty that is malleable and can be easily molded to any desired shape. First, we placed an ionization chamber at different depths in a solid water phantom under a Gamma Putty shield of thickness (t = 0, 3, 5, 10, 15, 20, and 25 mm, respectively) and measured the ionizing radiation on the central axis (CAX) for electron beam ranging in energies from 6 to 20 MeV. Next, we investigated the relationship between the relative ionization (RI) measured at a fixed depth for several Gamma Putty shield at different cutout diameters ranging from 2 to 5 cm for various beam energies and derived an exponential fitting equation for clinical purposes. The dose profiles along the CAX show that bremsstrahlung dominates for Gamma Putty thickness >15 mm. For high-energy beams (12-20 MeV) and all Gamma Putty thicknesses up to 25 mm, RI below 5% could not be achieved due to the strong bremsstrahlung component. However, Gamma Putty is a very suitable material for reducing the transmission factor below 5% and protecting underlying normal tissues for low-energy electron beams (6-9 MeV). PMID:27651563

  6. Gamma Putty dosimetric studies in electron beam

    PubMed Central

    Gloi, Aime M.

    2016-01-01

    Traditionally, lead has been used for field shaping in megavoltage electron beams in radiation therapy. In this study, we analyze the dosimetric parameters of a nontoxic, high atomic number (Z = 83), bismuth-loaded material called Gamma Putty that is malleable and can be easily molded to any desired shape. First, we placed an ionization chamber at different depths in a solid water phantom under a Gamma Putty shield of thickness (t = 0, 3, 5, 10, 15, 20, and 25 mm, respectively) and measured the ionizing radiation on the central axis (CAX) for electron beam ranging in energies from 6 to 20 MeV. Next, we investigated the relationship between the relative ionization (RI) measured at a fixed depth for several Gamma Putty shield at different cutout diameters ranging from 2 to 5 cm for various beam energies and derived an exponential fitting equation for clinical purposes. The dose profiles along the CAX show that bremsstrahlung dominates for Gamma Putty thickness >15 mm. For high-energy beams (12–20 MeV) and all Gamma Putty thicknesses up to 25 mm, RI below 5% could not be achieved due to the strong bremsstrahlung component. However, Gamma Putty is a very suitable material for reducing the transmission factor below 5% and protecting underlying normal tissues for low-energy electron beams (6–9 MeV).

  7. Gamma Putty dosimetric studies in electron beam

    PubMed Central

    Gloi, Aime M.

    2016-01-01

    Traditionally, lead has been used for field shaping in megavoltage electron beams in radiation therapy. In this study, we analyze the dosimetric parameters of a nontoxic, high atomic number (Z = 83), bismuth-loaded material called Gamma Putty that is malleable and can be easily molded to any desired shape. First, we placed an ionization chamber at different depths in a solid water phantom under a Gamma Putty shield of thickness (t = 0, 3, 5, 10, 15, 20, and 25 mm, respectively) and measured the ionizing radiation on the central axis (CAX) for electron beam ranging in energies from 6 to 20 MeV. Next, we investigated the relationship between the relative ionization (RI) measured at a fixed depth for several Gamma Putty shield at different cutout diameters ranging from 2 to 5 cm for various beam energies and derived an exponential fitting equation for clinical purposes. The dose profiles along the CAX show that bremsstrahlung dominates for Gamma Putty thickness >15 mm. For high-energy beams (12–20 MeV) and all Gamma Putty thicknesses up to 25 mm, RI below 5% could not be achieved due to the strong bremsstrahlung component. However, Gamma Putty is a very suitable material for reducing the transmission factor below 5% and protecting underlying normal tissues for low-energy electron beams (6–9 MeV). PMID:27651563

  8. Spatial Arrangement of Ribosomal Proteins: Reaction of the Escherichia coli 30S Subunit with bis-Imidoesters

    PubMed Central

    Bickle, T. A.; Hershey, J. W. B.; Traut, R. R.

    1972-01-01

    The 30S ribosomal subunit of E. coli was treated with the bifunctional reagent bis-(methyl)suberimidate. Crosslinked ribosomal proteins were identified as bands with increased molecular weight after electrophoresis in polyacrylamide gels containing sodium dodecyl sulphate. The pattern of crosslinked products was altered when unfolded subunits were used. Free ribosomal protein was not crosslinked. Several of the crosslinked products were cleaved by ammonolysis to form the original monomeric protein constituents. The low yields of the reactions necessitated the use of radioactive proteins and auto-radiographic procedures. The crosslinked proteins were tentatively identified by coelectrophoresis of the radioactive ammonolysis products with carrier 30S protein in sodium dodecyl sulphate, and coelectrophoresis at pH 4.5 in buffers containing urea. Images PMID:4556460

  9. Optical observations of meteors in RI Nikolaev Astronomical Observatory

    NASA Astrophysics Data System (ADS)

    Shulga, Alexander; Sybiryakova, Yevgeniya; Kulichenko, Nikolay; Vovk, Vasyl

    2015-08-01

    Video observations of meteors at the RI NAO are conducted using meteor patrol, which includes 6 optical telescopes (4 lenses: f = 85 mm, f/1.8; 2 lenses: f = 100 mm, f/2.0) equipped with a TV CCD cameras WAT-902H2 (768×576, 8.6×8.3µ). The field of view of 4 telescopes is 3.2°×4.2° and 2.7°×3.6° for 2 telescopes. System doesn't have any intensifier. Each video system is contained in a hermetic capsule to prevent it from rain and other aggressive meteorological conditions. Cameras work in the interlace mode with rate 50 half-frames per second.During 2011-2014 4135 single station meteors were observed. The mean duration of observed meteor trajectories are in 0.05-0.6 s. Double station observation campaigns has been started in September 2013 and it is still working with baseline 11.8 km. During September 2013 - September 2014 total number of observed meteor trajectories was 1757. Number of double station meteors - 328. The mean accuracy of visible radiant determination is less than 0.5 arc sec, more than 80% of radiates have standard deviation less than 0.2 arc sec.

  10. CCD UBV(RI)C photometry of twenty open clusters

    NASA Astrophysics Data System (ADS)

    Oralhan, İnci Akkaya; Karataş, Yüksel; Schuster, William J.; Michel, Raúl; Chavarría, Carlos

    2015-01-01

    Fundamental astrophysical parameters have been derived for 20 open clusters (OCs) using CCD UBV(RI)C photometric data observed with the 84 cm telescope at the San Pedro Mártir National Astronomical Observatory, México. The interstellar reddenings, metallicities, distances, and ages have been compared to the literature values. Significant differences are usually due to the usage of diverse empirical calibrations and differing assumptions, such as concerning cluster metallicity, as well as distinct isochrones which correspond to differing element-abundance ratios, internal stellar physics, and photometric systems. Different interstellar reddenings, as well as varying reduction and cluster-membership techniques, are also responsible for these kinds of systematic differences and errors. The morphological ages, which are derived from the morphological indices (δV and δ1) in the CM diagrams, are in good agreement with the isochrone ages of 12 OCs, those with good red clump (RC) and red giant (RG) star candidates. No metal abundance gradient is detected for the range 6.82⩽RGC⩽15.37 kpc, nor any correlation between the cluster ages and metal abundances for these 20 OCs. Young, metal-poor OCs, observed here in the third Galactic quadrant, may be associated with stellar over-densities, such as that in Canis Major (Martin et al.) and the Monoceros Ring (Newberg et al.), or signatures of past accretion events, as discussed by Yong et al. and Carraro et al.

  11. Independent in vitro assembly of all three major morphological parts of the 30S ribosomal subunit of Thermus thermophilus.

    PubMed

    Agalarov, S C; Selivanova, O M; Zheleznyakova, E N; Zheleznaya, L A; Matvienko, N I; Spirin, A S

    1999-12-01

    Fragments of the 16S rRNA of Thermus thermophilus representing the 3' domain (nucleotides 890-1515) and the 5' domain (nucleotides 1-539) have been prepared by transcription in vitro. Incubation of these fragments with total 30S ribosomal proteins of T. thermophilus resulted in formation of specific RNPs. The particle assembled on the 3' RNA domain contained seven proteins corresponding to Escherichia coli ribosomal proteins S3, S7, S9, S10, S13, S14, and S19. All of them have previously been shown to interact with the 3' domain of the 16S RNA and to be localized in the head of the 30S ribosomal subunit. The particle formed on the 5' RNA domain contained five ribosomal proteins corresponding to E. coli proteins S4, S12, S17, S16, and S20. These proteins are known to be localized in the main part of the body of the 30S subunit. Both types of particle were compact and had sedimentation coefficients of 15.5 S and 13 S, respectively. Together with our recent demonstration of the reconstitution of the RNA particle representing the platform of the T. thermophilus 30S ribosomal subunit [Agalarov, S.C., Zheleznyakova, E.N., Selivanova, O.M., Zheleznaya, L.A., Matvienko, N.I., Vasiliev, V.D. & Spirin, A.S. (1998) Proc. Natl Acad. Sci. USA 95, 999-1003], these experiments establish that all three main structural lobes of the small ribosomal subunit can be reconstituted independently of each other and prepared in the individual state.

  12. FRET-based kinetic analysis of highly reactive heterochiral DNA toward EcoRI endonuclease.

    PubMed

    Urata, Hidehito; Tamaki, Chihiro; Matsuno, Miki; Wada, Shun-ichi; Akagi, Masao

    2009-12-11

    We found unusual reactivity of a heterochiral dodecadeoxynucleotide toward EcoRI that contains an unnatural l-nucleotide residue at the 3'-flanking site of the hexameric EcoRI recognition sequence. In this study, the kinetic parameters for the reaction were determined by means of a heterochiral molecular beacon that contains the EcoRI recognition sequence in the stem region and possesses the fluorescent and quenching dyes at the 5'- and 3'-termini, respectively. We found that the heterochiral molecular beacon showed large V(max) and small K(m) values compared to the corresponding homochiral one. This chiral modification is expected to induce a preferable conformational change for binding and catalysis by EcoRI.

  13. Fast, accurate evaluation of exact exchange: The occ-RI-K algorithm

    SciTech Connect

    Manzer, Samuel; Horn, Paul R.; Mardirossian, Narbe; Head-Gordon, Martin

    2015-07-14

    Construction of the exact exchange matrix, K, is typically the rate-determining step in hybrid density functional theory, and therefore, new approaches with increased efficiency are highly desirable. We present a framework with potential for greatly improved efficiency by computing a compressed exchange matrix that yields the exact exchange energy, gradient, and direct inversion of the iterative subspace (DIIS) error vector. The compressed exchange matrix is constructed with one index in the compact molecular orbital basis and the other index in the full atomic orbital basis. To illustrate the advantages, we present a practical algorithm that uses this framework in conjunction with the resolution of the identity (RI) approximation. We demonstrate that convergence using this method, referred to hereafter as occupied orbital RI-K (occ-RI-K), in combination with the DIIS algorithm is well-behaved, that the accuracy of computed energetics is excellent (identical to conventional RI-K), and that significant speedups can be obtained over existing integral-direct and RI-K methods. For a 4400 basis function C{sub 68}H{sub 22} hydrogen-terminated graphene fragment, our algorithm yields a 14 × speedup over the conventional algorithm and a speedup of 3.3 × over RI-K.

  14. Fast, accurate evaluation of exact exchange: The occ-RI-K algorithm

    PubMed Central

    Manzer, Samuel; Horn, Paul R.; Mardirossian, Narbe; Head-Gordon, Martin

    2015-01-01

    Construction of the exact exchange matrix, K, is typically the rate-determining step in hybrid density functional theory, and therefore, new approaches with increased efficiency are highly desirable. We present a framework with potential for greatly improved efficiency by computing a compressed exchange matrix that yields the exact exchange energy, gradient, and direct inversion of the iterative subspace (DIIS) error vector. The compressed exchange matrix is constructed with one index in the compact molecular orbital basis and the other index in the full atomic orbital basis. To illustrate the advantages, we present a practical algorithm that uses this framework in conjunction with the resolution of the identity (RI) approximation. We demonstrate that convergence using this method, referred to hereafter as occupied orbital RI-K (occ-RI-K), in combination with the DIIS algorithm is well-behaved, that the accuracy of computed energetics is excellent (identical to conventional RI-K), and that significant speedups can be obtained over existing integral-direct and RI-K methods. For a 4400 basis function C68H22 hydrogen-terminated graphene fragment, our algorithm yields a 14 × speedup over the conventional algorithm and a speedup of 3.3 × over RI-K. PMID:26178096

  15. Planetary GIS and EuroPlanet-RI H2020

    NASA Astrophysics Data System (ADS)

    Rossi, A. P.; Cecconi, B.; Manaud, N.; Erard, S.; Marmo, C.

    2015-10-01

    Geographic Information System (GIS) practice and applications within Planetary Science became in the last decade a major component for studying solid surfaces of Solar System bodies [e.g. 1,2,3]: from earlier mainly Mars-focused efforts limited to few datasets, the availability of high-quality spatial data grew enormously and its accessibility is also enhanced by the use of OGC web standards. Higher-level, calibrated georeferenced datasets are the prime target for geologic and related thematic mapping [e.g. 4], although the communities potentially benefiting from a GIS-based approach are beyond and they include most closely Atmospheric science, as well as Magnetospheric and Plasma Physics, to quote only few. In the upcoming EuroPlanet-RI H2020 project Planetary GIS efforts are embedded within the VESPA activity [5] and they allow for a tight integration of OGC and VO-based tools and interfaces [6]. Nowadays GIS-based analyses are used for carrying out research tasks and systematic mapping on planetary bodies, but also for a wide range of analyses related [e.g. 7] to landing site selection, ranging from scientific merit to safety [e.g.8] Community building is a key part of VESPA [5], but also independently followed by other actors like ESA PSA [9]. Recently a workshop on Planetary GIS in broad sense and with particular reference to ESA data archives has been organized [10]. Such workshop has been strongly supported by ESA and the broad planetary community, both directly and through its official channel for Planetary Science archive science access and exploitation-related needs, the PSA User Group [11]. Its outcomes, also in terms of use case development, might be instrumental to VESPA GIS/VO future activities

  16. Heterogeneity in men's marijuana use in the 20s: adolescent antecedents and consequences in the 30s.

    PubMed

    Washburn, Isaac J; Capaldi, Deborah M

    2015-02-01

    Adolescent psychopathology is commonly connected to marijuana use. How changes in these adolescent antecedents and in adolescent marijuana use are connected to patterns of marijuana use in the 20s is little understood. Another issue not clearly understood is psychopathology in the 30s as predicted by marijuana use in the 20s. This study sought to examine these two issues and the associations with marijuana disorder diagnoses using a longitudinal data set of 205 men with essentially annual reports. Individual psychopathology and family characteristics from the men's adolescence were used to predict their patterns of marijuana use across their 20s, and aspects of the men's psychopathology in their mid-30s were predicted from these patterns. Three patterns of marijuana use in the 20s were identified using growth mixture modeling and were associated with diagnoses of marijuana disorders at age 26 years. Parental marijuana use predicted chronic use for the men in adulthood. Patterns of marijuana use in the 20s predicted antisocial behavior and deviant peer association at age 36 years (controlling for adolescent levels of the outcomes by residualization). These findings indicate that differential patterns of marijuana use in early adulthood are associated with psychopathology toward midlife.

  17. Studies on the ability of partially iodinated 16S RNA to participate in 30S ribosome assembly.

    PubMed

    Schendel, P L; Craven, G R

    1976-11-01

    Deproteinated 16S RNA was iodinated at pH 5.0 in an aqueous solution containing TlCl3 plus KI for 1-5 hours at 42 degrees C. Under these conditions 33 moles of iodine are incorporated per mole of RNA. As judged by sucrose gradient sedimentation, the iodinated RNA does not exhibit any large alteration in conformation as compared to unmodified 16S. The iodinated RNA was examined for its ability to reconstitute with total 30S proteins. Sedimentation velocity analysis reveals that the reconstituted subunit has a sedimentation constant of approximately 20S. In addition, protein analysis of particles reconstituted with 16S RNA iodinated for 5 hours indicates that proteins S2, S10, S13, S14, S15, S17, S18, S19, and S21 are no longer able to participate in the 30S assembly process and that proteins S6, S16 and S20 are present in reduced amounts. The ramifications of these results concerning protein-RNA and RNA-RNA interactions occurring in ribosome assembly are discussed.

  18. Depletion of Free 30S Ribosomal Subunits in Escherichia coli by Expression of RNA Containing Shine-Dalgarno-Like Sequences

    PubMed Central

    Mawn, Mary V.; Fournier, Maurille J.; Tirrell, David A.; Mason, Thomas L.

    2002-01-01

    We have constructed synthetic coding sequences for the expression of poly(α,l-glutamic acid) (PLGA) as fusion proteins with dihydrofolate reductase (DHFR) in Escherichia coli. These PLGA coding sequences use both GAA and GAG codons for glutamic acid and contain sequence elements (5′-GAGGAGG-3′) that resemble the consensus Shine-Dalgarno (SD) sequence found at translation initiation sites in bacterial mRNAs. An unusual feature of DHFR-PLGA expression is that accumulation of the protein is inversely related to the level of induction of its mRNA. Cellular protein synthesis was inhibited >95% by induction of constructs for either translatable or untranslatable PLGA RNAs. Induction of PLGA RNA resulted in the depletion of free 30S ribosomal subunits and the appearance of new complexes in the polyribosome region of the gradient. Unlike normal polyribosomes, these complexes were resistant to breakdown in the presence of puromycin. The novel complexes contained 16S rRNA, 23S rRNA, and PLGA RNA. We conclude that multiple noninitiator SD-like sequences in the PLGA RNA inhibit cellular protein synthesis by sequestering 30S small ribosomal subunits and 70S ribosomes in nonfunctional complexes on the PLGA mRNA. PMID:11751827

  19. Corynebacterium parvum- and Mycobacterium bovis bacillus Calmette-Guerin-induced granuloma formation is inhibited in TNF receptor I (TNF-RI) knockout mice and by treatment with soluble TNF-RI.

    PubMed

    Senaldi, G; Yin, S; Shaklee, C L; Piguet, P F; Mak, T W; Ulich, T R

    1996-12-01

    The aim of this study was to examine the role of TNF receptor I (TNF-RI) in the pathogenesis of heat-killed Corynebacterium parvum- and live bacillus Calmette-Guerin (BCG)-induced granulomas. Granuloma formation was analyzed in TNF-RI knockout mice and after treatment with soluble TNF-RI (sTNF-RI). TNF-RI knockout mice injected with C. parvum or BCG developed fewer and smaller granulomas than wild-type control mice. Mice treated with sTNF-RI from days 7 to 13 after injection of C. parvum or BCG developed fewer and smaller granulomas than saline-treated control mice. Established granulomas regressed in rats treated with sTNF-RI from days 10 to 13 after injection of C. parvum. In conclusion, TNF signaling via TNF-RI contributes to the pathogenesis of C. parvum- and BCG-induced granulomas. sTNF-RI inhibits the development of granulomas and can cause the regression of established granulomas. PMID:8943410

  20. Endogenous IL-1 in cognitive function and anxiety: a study in IL-1RI-/- mice.

    PubMed

    Murray, Carol L; Obiang, Pauline; Bannerman, David; Cunningham, Colm

    2013-01-01

    Interleukin-1 (IL-1) is a key pro-inflammatory cytokine, produced predominantly by peripheral immune cells but also by glia and some neuronal populations within the brain. Its signalling is mediated via the binding of IL-1α or IL-1β to the interleukin-1 type one receptor (IL-1RI). IL-1 plays a key role in inflammation-induced sickness behaviour, resulting in depressed locomotor activity, decreased exploration, reduced food and water intake and acute cognitive deficits. Conversely, IL-1 has also been suggested to facilitate hippocampal-dependent learning and memory: IL-1RI(-/-) mice have been reported to show deficits on tasks of visuospatial learning and memory. We sought to investigate whether there is a generalised hippocampal deficit in IL-1RI(-/-) animals. Therefore, in the current study we compared wildtype (WT) mice to IL-1RI(-/-) mice using a variety of hippocampal-dependent learning and memory tasks, as well as tests of anxiety and locomotor activity. We found no difference in performance of the IL-1RI(-/-) mice compared to WT mice in a T-maze working memory task. In addition, the IL-1RI(-/-) mice showed normal learning in various spatial reference memory tasks including the Y-maze and Morris mater maze, although there was a subtle deficit in choice behaviour in a spatial discrimination, beacon watermaze task. IL-1RI(-/-) mice also showed normal memory for visuospatial context in the contextual fear conditioning paradigm. In the open field, IL-1RI(-/-) mice showed a significant increase in distance travelled and rearing behaviour compared to the WT mice and in the elevated plus-maze spent more time in the open arms than did the WT animals. The data suggest that, contrary to prior studies, IL-1RI(-/-) mice are not robustly impaired on hippocampal-dependent memory and learning but do display open field hyperactivity and decreased anxiety compared to WT mice. The results argue for a careful evaluation of the roles of endogenous IL-1 in hippocampal and limbic

  1. RI in central retinal artery as assessed by CDI does not correspond to retinal vascular resistance.

    PubMed

    Polska, E; Kircher, K; Ehrlich, P; Vecsei, P V; Schmetterer, L

    2001-04-01

    The aim of the present study was to investigate the association between ultrasound Doppler measurements of resistive index (RI) in the central retinal artery and retinal vascular resistance (R) assessed with laser Doppler velocimetry, vessel size measurement, and calculation of ocular perfusion pressure (PP) in healthy subjects. An increase in vascular resistance was induced by inhalation of 100% O(2). During hyperoxia no significant changes in PP were observed. Mean flow velocity in main retinal veins was reduced by -27.5 +/- 2.0%. The average decrease in diameter was -11.5 +/- 1.0%. R, which was calculated as the ratio of PP to flow rate, increased by 97.6 +/- 7.7%. RI increased as well, but the effect was much smaller (6.6 +/- 2.2%). In addition, a negative correlation was found between baseline values of R and RI (r = -0.83). During hyperoxia R and RI were not associated. In conclusion, our data indicate that RI as assessed with color Doppler imaging in the central retinal artery is not an adequate measure of R.

  2. Nanodomains in Early and Later Phases of FcεRI Signaling

    PubMed Central

    Holowka, David; Baird, Barbara

    2014-01-01

    Our long term efforts to elucidate receptor-mediated signaling in immune cells, particularly transmembrane signaling initiated by the receptor (FcεRI) for immunoglobulin E (IgE) in mast cells, led us unavoidably to contemplate the role of the heterogeneous plasma membrane. Our early investigations with fluorescence microscopy revealed co-redistribution of certain lipids and signaling components with antigen-crosslinked IgE-FcεRI and pointed to participation of ordered membrane domains in the signaling process. With a focus on this function, we have worked along with others to develop diverse and increasingly sophisticated tools to analyze the complexity of membrane structure that facilitates regulation and targeting of signaling events. This essay describes how initial membrane interactions of clustered IgE-FcεRI lead to downstream cellular responses and how biochemical information integrated with nanoscale resolution spectroscopy and imaging is providing mechanistic insights at the level of molecular complexes. PMID:25658351

  3. RFI/RI work plan for the Road A Chemical Basin 904-111G

    SciTech Connect

    Kmetz, T.F.

    2000-03-07

    This Resource Conservation and Recovery Act (RCRA) Facility Investigation (RFI)/Remedial Investigation (RI) Work Plan has been prepared for the Road A Chemical Basin Operable Unit (RdACB OU) (904-111G). This unit is subject to the requirements of both RCRA and the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA). This Work Plan presents the initial evaluation of existing unit data, applicable background data, the regulatory framework for the unit investigation, and the evaluations and decisions made during the determination of the scope and objectives of the planned Remedial Investigation/Feasibility Study (RI/FS) activities.

  4. DoRiNA 2.0--upgrading the doRiNA database of RNA interactions in post-transcriptional regulation.

    PubMed

    Blin, Kai; Dieterich, Christoph; Wurmus, Ricardo; Rajewsky, Nikolaus; Landthaler, Markus; Akalin, Altuna

    2015-01-01

    The expression of almost all genes in animals is subject to post-transcriptional regulation by RNA binding proteins (RBPs) and microRNAs (miRNAs). The interactions between both RBPs and miRNAs with mRNA can be mapped on a whole-transcriptome level using experimental and computational techniques established in the past years. The combined action of RBPs and miRNAs is thought to form a post-transcriptional regulatory code. Here we present doRiNA 2.0, available at http://dorina.mdc-berlin.de. In this highly improved new version, we have completely reworked the user interface and expanded the database to improve the usability of the website. Taking into account user feedback over the past years, the input forms for both the simple and the combinatorial search function have been streamlined and combined into a single web page that will also display the search results. Especially, custom uploads is one of the key new features in doRiNA 2.0. To enable the inclusion of doRiNA into third-party analysis pipelines, all operations are accessible via a REST API. Alternatively, local installations can be queried using a Python API. Both the web application and the APIs are available under an OSI-approved Open Source license that allows research and commercial access and re-use.

  5. Escherichia coli rimM and yjeQ null strains accumulate immature 30S subunits of similar structure and protein complement

    PubMed Central

    Leong, Vivian; Kent, Meredith; Jomaa, Ahmad; Ortega, Joaquin

    2013-01-01

    Assembly of the Escherichia coli 30S ribosomal subunits proceeds through multiple parallel pathways. The protein factors RimM, YjeQ, RbfA, and Era work in conjunction to assist at the late stages of the maturation process of the small subunit. However, it is unclear how the functional interplay between these factors occurs in the context of multiple parallel pathways. To understand how these factors work together, we have characterized the immature 30S subunits that accumulate in ΔrimM cells and compared them with immature 30S subunits from a ΔyjeQ strain. The cryo-EM maps obtained from these particles showed that the densities representing helices 44 and 45 in the rRNA were partially missing, suggesting mobility of these motifs. These 30S subunits were also partially depleted in all tertiary ribosomal proteins, particularly those binding in the head domain. Using image classification, we identified four subpopulations of ΔrimM immature 30S subunits differing in the amount of missing density for helices 44 and 45, as well as the amount of density existing in these maps for the underrepresented proteins. The structural defects found in these immature subunits resembled those of the 30S subunits that accumulate in the ΔyjeQ strain. These findings are consistent with an “early convergency model” in which multiple parallel assembly pathways of the 30S subunit converge into a late assembly intermediate, as opposed to the mature state. Functionally related factors will bind to this intermediate to catalyze the last steps of maturation leading to the mature 30S subunit. PMID:23611982

  6. 78 FR 52580 - Submission for Review: Request for Case Review for Enhanced Disability Annuity Benefit, RI 20-123

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-23

    ... MANAGEMENT Submission for Review: Request for Case Review for Enhanced Disability Annuity Benefit, RI 20-123...-123. As required by the Paperwork Reduction Act of 1995, (Pub. L. 104-13, 44 U.S.C. chapter 35) as... email to Cyrus.Benson@opm.gov or faxed to (202) 606- 0910. SUPPLEMENTARY INFORMATION: RI 20-123...

  7. 76 FR 22938 - Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-25

    ... MANAGEMENT Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child AGENCY: U.S. Office of... to comment on a revised information collection request (ICR) 3206-0206, Evidence to Prove Dependency....Benson@opm.gov or faxed to (202) 606-0910. SUPPLEMENTARY INFORMATION: RI 25-37, Evidence to...

  8. 76 FR 29805 - Submission for Review: Verification of Full-Time School Attendance, RI 25-49

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-23

    ... MANAGEMENT Submission for Review: Verification of Full-Time School Attendance, RI 25-49 AGENCY: U.S. Office... opportunity to comment on a revised information collection request (ICR) 3206-0215, Verification of Full-Time...@opm.gov or faxed to (202) 606-0910. SUPPLEMENTARY INFORMATION: RI 25-49, Verification of...

  9. 33 CFR 167.102 - In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Narragansett Bay approach.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Narragansett Bay approach. 167.102 Section 167.102 Navigation and....102 In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Narragansett Bay approach. (a)...

  10. 33 CFR 167.101 - In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Precautionary areas.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false In the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Precautionary areas. 167.101 Section 167.101 Navigation and Navigable... the approaches to Narragansett Bay, RI, and Buzzards Bay, MA: Precautionary areas. (a) A...

  11. 78 FR 55121 - Submission for Review: Self-Certification of Full-Time School Attendance for the School Year, RI...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-09

    ... MANAGEMENT Submission for Review: Self-Certification of Full-Time School Attendance for the School Year, RI 25-14 and Information; and Instructions for Completing the Self-Certification of Full-Time School Attendance for the School Year, RI 25-14A AGENCY: U.S. Office of Personnel Management. ACTION: 60-Day...

  12. 77 FR 71200 - Submission for Review: 3206-0140, Representative Payee Application (RI 20-7) and Information...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-29

    ... MANAGEMENT Submission for Review: 3206-0140, Representative Payee Application (RI 20-7) and Information Necessary for a Competency Determination (RI 30-3) AGENCY: U.S. Office of Personnel Management. ACTION: 60-Day notice and request for comments. SUMMARY: The Retirement Services, Office of Personnel...

  13. 76 FR 18811 - Submission for Review: Letter Reply To Request for Information (RI 20-64), Former Spouse Survivor...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ... collection was previously published in the Federal Register on November 18, 2010 at Volume 75 FR 70710... Annuity Election (RI 20-64A), Information on Electing a Survivor Annuity for Your Former Spouse (RI 20-64B... on Electing a Survivor Annuity for Your Former Spouse, is a pamphlet that provides...

  14. 78 FR 55123 - Submission for Review: We Need Information About Your Missing Payment, RI 38-31

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-09

    ... MANAGEMENT Submission for Review: We Need Information About Your Missing Payment, RI 38-31 AGENCY: U.S... (ICR) 3206-0187, We Need Information About Your Missing Payment, RI 38-31. As required by the Paperwork... Services, Office of Personnel Management. Title: We Need Information About Your Missing Payment. OMB:...

  15. Mutants of the EcoRI endonuclease with promiscuous substrate specificity implicate residues involved in substrate recognition.

    PubMed Central

    Heitman, J; Model, P

    1990-01-01

    The EcoRI restriction endonuclease cleaves DNA molecules at the sequence GAATTC. We devised a genetic screen to isolate EcoRI mutants with altered or broadened substrate specificity. In vitro, the purified mutant enzymes cleave both the wild-type substrate and sites which differ from this by one nucleotide (EcoRI star sites). These mutations identify four residues involved in substrate recognition and catalysis that are different from the amino acids proposed to recognize the substrate based on the EcoRI-DNA co-crystal structure. In fact, these mutations suppress EcoRI mutants altered at some of the proposed substrate binding residues (R145, R200). We argue that these mutations permit cleavage of additional DNA sequences either by perturbing or removing direct DNA-protein interactions or by facilitating conformational changes that allosterically couple substrate binding to DNA scission. Images Fig. 2. Fig. 3. Fig. 4. Fig. 5. PMID:2209548

  16. Tetraspanin CD151 Is a Negative Regulator of FcεRI-Mediated Mast Cell Activation

    PubMed Central

    Abdala-Valencia, Hiam; Bryce, Paul J.; Schleimer, Robert P.; Wechsler, Joshua B.; Loffredo, Lucas F.; Cook-Mills, Joan M.; Hsu, Chia-Lin; Berdnikovs, Sergejs

    2016-01-01

    Mast cells are critical in the pathogenesis of allergic disease due to the release of preformed and newly synthesized mediators, yet the mechanisms controlling mast cell activation are not well understood. Members of the tetraspanin family are recently emerging as modulators of FcεRI-mediated mast cell activation; however, mechanistic understanding of their function is currently lacking. The tetraspanin CD151 is a poorly understood member of this family and is specifically induced on mouse and human mast cells upon FcεRI aggregation but its functional effects are unknown. In this study, we show that CD151 deficiency significantly exacerbates the IgE-mediated late phase inflammation in a murine model of passive cutaneous anaphylaxis. Ex vivo, FcεRI stimulation of bone marrow–derived mast cells from CD151−/− mice resulted in significantly enhanced expression of proinflammatory cytokines IL-4, IL-13, and TNF-α compared with wild-type controls. However, FcεRI -induced mast cell degranulation was unaffected. At the molecular signaling level, CD151 selectively regulated IgE-induced activation of ERK1/2 and PI3K, associated with cytokine production, but had no effect on the phospholipase Cγ1 signaling, associated with degranulation. Collectively, our data indicate that CD151 exerts negative regulation over IgE-induced late phase responses and cytokine production in mast cells. PMID:26136426

  17. 75 FR 47881 - Noise Exposure Map Notice, T.F.Green Airport, Warwick, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-09

    ... Federal Aviation Administration Noise Exposure Map Notice, T.F.Green Airport, Warwick, RI AGENCY: Federal... its determination that the noise exposure maps for T.F.Green Airport as submitted by the Rhode Island... INFORMATION: This notice announces that the FAA finds that the noise exposure maps submitted for...

  18. 76 FR 57910 - Regulated Navigation Area; Route 24 Bridge Construction, Tiverton and Portsmouth, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-19

    ..., 2008, issue of the Federal Register (73 FR 3316). Public Meeting We do not now plan to hold a public... and increase its cost to the public. For engineering reasons, to allow the lifting of huge steel... during optimal weather conditions that were deemed by RI DOT as an engineering necessity. Because of...

  19. 78 FR 4172 - Submission for Review: RI 25-15, Notice of Change in Student's Status

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-18

    ... MANAGEMENT Submission for Review: RI 25-15, Notice of Change in Student's Status AGENCY: U.S. Office of... to comment on a revised information collection request (ICR) 3206-0042, Notice of Change in Student's... information collection was previously published in the Federal Register on August 15, 2012 at Volume 77...

  20. 77 FR 49028 - Submission for Review: Notice of Change in Student's Status, RI25-15

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-15

    ... MANAGEMENT Submission for Review: Notice of Change in Student's Status, RI25-15 AGENCY: U.S. Office of... to comment on a revised information collection request (ICR) 3206-0042, Notice of Change in Student's... through the use of appropriate automated, electronic, mechanical, or other technological...

  1. 77 FR 28253 - Safety Zone; America's Cup World Series, East Passage, Narragansett Bay, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-14

    ... Series, East Passage, Narragansett Bay, RI'' in the Federal Register (77 FR 7025). We received one... SECURITY Coast Guard 33 CFR Part 165 RIN 1625-AA00 Safety Zone; America's Cup World Series, East Passage... the America's Cup World Series (ACWS) sailing vessel racing event. DATES: This rule is effective...

  2. 77 FR 49029 - Submission for Review: Annuity Supplement Earnings Report, RI 92-22

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-15

    ... MANAGEMENT Submission for Review: Annuity Supplement Earnings Report, RI 92- 22 AGENCY: U.S. Office of Personnel Management. ACTION: 60-Day Notice and request for comments. SUMMARY: The Retirement Services, Office of Personnel Management (OPM) offers the general public and other federal agencies the...

  3. 76 FR 18812 - Submission for Review: RI 30-10, Disabled Dependent Questionnaire

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ... the medical condition and earning capacity for the Office of Personnel Management to be able to... MANAGEMENT Submission for Review: RI 30-10, Disabled Dependent Questionnaire AGENCY: U.S. Office of Personnel Management. ACTION: 60-day notice and request for comments. SUMMARY: The Retirement Services, Office...

  4. Genotypic Variability of Soybean Response to Agrobacterium Strains Harboring the Ti or Ri Plasmids

    PubMed Central

    Owens, Lowell D.; Cress, Dean E.

    1985-01-01

    Twenty four diverse cultivars of soybean (Glycine max [L.] Merrill) and three lines of its annual wild progenitor Glycine soja Sieb and Zucc. were tested for their response to Agrobacterium strains harboring either the Ti (tumor-inducing) plasmid (pTi) from Agrobacterium tumefaciens or the Ri (root-inducing) plasmid (pRi) from Agrobacterium rhizogenes following uniform wounding and inoculation. Based upon gall weight at 8 weeks postinfection, three G. max cultivars (Biloxi, Jupiter, and Peking) and one G. soja line, Plant Introduction (PI) 398.693B, were judged highly susceptible to A. tumefaciens strain A348 (pTiA6), ten genotypes moderately susceptible, 11 weakly susceptible, and two nonsusceptible. Of 26 genotypes inoculated with strain R1000 (pRiA4b), only seven responded in a clearly susceptible fashion by forming small, fleshy roots at internodal infection sites. Cotyledons excised from 1- or 3-day old seedlings of Peking and Biloxi cultivars also formed galls when infected in vitro with agrobacteria carrying either the Ti or Ri plasmid. Tumor lines established from cotyledon and stem galls induced by A. tumefaciens A348 (pTiA6) exhibited the T-DNA borne traits of phytohormone-independent growth and octopine synthesis. Additionally, DNA isolated from cultured tumors hybridized with labeled T-DNA probe. Images Fig. 2 Fig. 3 Fig. 4 Fig. 5 Fig. 6 PMID:16664035

  5. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Newport-Bermuda Regatta, Narragansett Bay, Newport, RI 100.119 Section 100.119 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.119 Newport-Bermuda Regatta, Narragansett Bay, Newport,...

  6. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Newport-Bermuda Regatta, Narragansett Bay, Newport, RI 100.119 Section 100.119 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.119...

  7. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Newport-Bermuda Regatta, Narragansett Bay, Newport, RI 100.119 Section 100.119 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.119...

  8. RiBOMS: RFID-based object management system for home environments.

    PubMed

    Iraola, Hodei; Schafer, James; Yu, Xunyi; Mullett, Gary; Ganz, Aura

    2011-01-01

    In this paper we introduce a RFID-based object management system, RiBOMS, for home environments. The system has an easy to use pictorial user interface aimed at older adults with associative memory impairments. The system technical correctness was successfully tested in a lab environment. PMID:22254778

  9. 77 FR 39395 - Special Local Regulations; Ocean State Tall Ships Festival 2012, Narragansett Bay, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-03

    ... ability to proceed in a single file behind numerous other spectator craft viewing the moored Tall Ships... Homeland Security FR Federal Register LLNR Light List Number NEPA National Environmental Policy Act NPRM... Festival 2012, Narragansett Bay, RI'' in the Federal Register (77 FR 16974). We received no comments on...

  10. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  11. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  12. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  13. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  14. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  15. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  16. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  17. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  18. 33 CFR 110.47 - Little Narragansett Bay, Watch Hill, R.I.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Little Narragansett Bay, Watch... SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.47 Little Narragansett Bay, Watch Hill, R.I. All of the navigable waters of Watch Hill Cove southeasterly of a line beginning at...

  19. 33 CFR 80.145 - Race Point, MA, to Watch Hill, RI.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Race Point, MA, to Watch Hill, RI... INTERNATIONAL NAVIGATION RULES COLREGS DEMARCATION LINES Atlantic Coast § 80.145 Race Point, MA, to Watch Hill... and Rhode Island from Race Point to Watch Hill. (b) A line drawn from Nobska Point Light to...

  20. Cirsium semzinanicum (Asteraceae), a new species from Hakkâri, Turkey

    PubMed Central

    Fırat, Mehmet

    2016-01-01

    Abstract Cirsium semzinanicum sp. nov. (Asteraceae) is described as a new species from Hakkâri, Turkey. The new species is a part of the sect. Epitrachys (Cardueae) and similar to Cirsium karduchorum, from which it differs in morphological characters such as leaves, involucre, phyllaries, corolla, achens and pollen morphology. Geographical distribution, habitat and IUCN conservation status of this species are given.

  1. Instantánea del cáncer de riñón

    Cancer.gov

    Información sobre las tendencias de incidencia, mortalidad y financiamiento del NCI sobre el cáncer de riñón; así como ejemplos de actividades del NCI y adelantos en la investigación de este tipo de cáncer.

  2. Assessing the Kha Ri Gude Mass Literacy Campaign: A Developmental Evaluation

    ERIC Educational Resources Information Center

    Romm, Norma R. A.; Dichaba, Mpho M.

    2015-01-01

    In this article we explicate our way of assessing the South African Kha Ri Gude Mass Literacy Campaign, and in particular its impact in the Eastern Cape. We provide an account primarily of focus group sessions conducted in 2013 and again in 2014 with volunteer educators and past learners in the campaign. We concentrate on the way in which…

  3. 33 CFR 100.119 - Newport-Bermuda Regatta, Narragansett Bay, Newport, RI

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... of Narragansett Bay, Newport, RI, within the following points (NAD 83): Latitude Longitude 41°27′51... will begin offshore and the following regulated area applies (NAD 83): Latitude Longitude 41°26′04″ N... operators of this regulation and other applicable laws. (c) Effective date. This section is in effect...

  4. 76 FR 36582 - Submission for Review: Disabled Dependent Questionnaire, RI 30-10

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-22

    ... collection was previously published in the Federal Register on April 5, 2011 at Volume 76 FR 18812 allowing... MANAGEMENT Submission for Review: Disabled Dependent Questionnaire, RI 30-10 AGENCY: U.S. Office of Personnel... on an existing information collection request (ICR) 3206-0179, Disabled Dependent Questionnaire....

  5. 33 CFR 100.112 - Swim the Bay, Narragansett Bay, Narragansett, RI.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Swim the Bay, Narragansett Bay, Narragansett, RI. 100.112 Section 100.112 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.112 Swim the...

  6. 76 FR 15246 - Anchorage Regulations; Narragansett Bay and Rhode Island Sound, RI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-21

    ... regarding our public dockets in the January 17, 2008 issue of the Federal Register (73 FR 3316). Public... Sound, RI AGENCY: Coast Guard, DHS. ACTION: Notice of proposed rulemaking. SUMMARY: The Coast Guard... an offshore anchorage in Rhode Island Sound south of Brenton Point, Rhode Island, for use by...

  7. 33 CFR 100.112 - Swim the Bay, Narragansett Bay, Narragansett, RI.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Swim the Bay, Narragansett Bay, Narragansett, RI. 100.112 Section 100.112 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY REGATTAS AND MARINE PARADES SAFETY OF LIFE ON NAVIGABLE WATERS § 100.112 Swim the...

  8. Beam diagnostics

    SciTech Connect

    Bogaty, J.; Clifft, B.E.; Zinkann, G.P.; Pardo, R.C.

    1995-08-01

    The ECR-PII injector beam line is operated at a fixed ion velocity. The platform high voltage is chosen so that all ions have a velocity of 0.0085c at the PII entrance. If a previous tune configuration for the linac is to be used, the beam arrival time must be matched to the previous tune as well. A nondestructive beam-phase pickup detector was developed and installed at the entrance to the PII linac. This device provides continuous phase and beam current information and allows quick optimization of the beam injected into PII. Bunches traverse a short tubular electrode thereby inducing displacement currents. These currents are brought outside the vacuum interface where a lumped inductance resonates electrode capacitance at one of the bunching harmonic frequencies. This configuration yields a basic sensitivity of a few hundred millivolts signal per microampere of beam current. Beam-induced radiofrequency signals are summed against an offset frequency generated by our master oscillator. The resulting kilohertz difference frequency conveys beam intensity and bunch phase information which is sent to separate processing channels. One channel utilizes a phase locked loop which stabilizes phase readings if beam is unstable. The other channel uses a linear full wave active rectifier circuit which converts kilohertz sine wave signal amplitude to a D.C. voltage representing beam current. A prototype set of electronics is now in use with the detector and we began to use the system in operation to set the arrival beam phase. A permanent version of the electronics system for the phase detector is now under construction. Additional nondestructive beam intensity and phase monitors at the {open_quotes}Booster{close_quotes} and {open_quotes}ATLAS{close_quotes} linac sections are planned as well as on some of the high-energy beam lines. Such a monitor will be particularly useful for FMA experiments where the primary beam hits one of the electric deflector plates.

  9. A combined quantitative mass spectrometry and electron microscopy analysis of ribosomal 30S subunit assembly in E. coli

    PubMed Central

    Sashital, Dipali G; Greeman, Candacia A; Lyumkis, Dmitry; Potter, Clinton S; Carragher, Bridget; Williamson, James R

    2014-01-01

    Ribosome assembly is a complex process involving the folding and processing of ribosomal RNAs (rRNAs), concomitant binding of ribosomal proteins (r-proteins), and participation of numerous accessory cofactors. Here, we use a quantitative mass spectrometry/electron microscopy hybrid approach to determine the r-protein composition and conformation of 30S ribosome assembly intermediates in Escherichia coli. The relative timing of assembly of the 3′ domain and the formation of the central pseudoknot (PK) structure depends on the presence of the assembly factor RimP. The central PK is unstable in the absence of RimP, resulting in the accumulation of intermediates in which the 3′-domain is unanchored and the 5′-domain is depleted for r-proteins S5 and S12 that contact the central PK. Our results reveal the importance of the cofactor RimP in central PK formation, and introduce a broadly applicable method for characterizing macromolecular assembly in cells. DOI: http://dx.doi.org/10.7554/eLife.04491.001 PMID:25313868

  10. Analysis of proteins of mouse sarcoma pseudotype viruses: type-specific radioimmunoassay for ecotropic virus p30's.

    PubMed

    Kennel, S J; Tennant, R W

    1979-06-01

    Murine sarcoma virus pseudotypes were prepared by infection of nonproducer cells (A1-2), which were transformed by the Gazdar strain of mouse sarcoma virus, with Gross (N-tropic), WN1802B (B-tropic), or Moloney (NB-tropic) viruses. The respective host range pseudotype sarcoma viruses were defined by the titration characteristics on cells with the appropriate Fv-1 genotype. Proteins from virus progeny were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Bands present in both the 65,000- and the 10,000- to 20,000- molecular-weight regions of the gel distinguished the pseudotype viruses from their respective helpers. Furthermore, two protein bands were noted in the p30 region of murine sarcoma virus (Gross), one corresponding to Gross virus p30, and another of slightly slower mobility. However, since the mobility of the putative sarcoma p30 is nearly indentical to that of WN1802B, its presence could not be established by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Type-specific radioimmunoassays for Gross virus p30 and for WN1802B p30 were applied for analysis of pseudotype preparations, and among several ecotropic viruses tested, only the homologous virus scored in the respective assay. By use of these assays, pseudotype viruses were found to contain only 8 to 48% helper-specific p30's; the remainder is presumably derived from the sarcoma virus.

  11. Characterisation of RNA fragments obtained by mild nuclease digestion of 30-S ribosomal subunits from Escherichia coli.

    PubMed

    Rinke, J; Ross, A; Brimacombe, R

    1977-06-01

    When Escherichia coli 30-S ribosomal subunits are hydrolysed under mild conditions, two ribonucleoprotein fragments of unequal size are produced. Knowledge of the RNA sequences contained in these hydrolysis products was required for the experiments described in the preceding paper, and the RNA sub-fragments have therefore been examined by oligonucleotide analysis. Two well-defined small fragments of free RNA, produced concomitantly with the ribonucleoprotein fragments, were also analysed. The larger ribonucleoprotein fragment, containing predominantly proteins S4, S5, S8, S15, S16 (17) and S20, contains a complex mixture of RNA sub-fragments varying from about 100 to 800 nucleotides in length. All these fragments arose from the 5'-terminal 900 nucleotides of 16-S RNA, corresponding to the well-known 12-S fragment. No long-range interactions could be detected within this RNA region in these experiments. The RNA from the smaller ribonucleoprotein fragment (containing proteins S7, S9 S10, S14 and S19) has been described in detail previously, and consists of about 450 nucleotides near the 3' end of the 16-S RNA, but lacking the 3'-terminal 150 nucleotides. The two small free RNA fragments (above) partly account for these missing 150 nucleotides; both fragments arose from section A of the 16-S RNA, but section J (the 3'-terminal 50 nucleotides) was not found. This result suggests that the 3' region of 16-S RNA is not involved in stable interactions with protein.

  12. A ribonucleoprotein fragment of the 30 S ribosome of E. coli containing two contiguous domains of the 16 S RNA.

    PubMed

    Spitnik-Elson, P; Elson, D; Avital, S; Abramowitz, R

    1982-08-11

    Ribonucleoprotein fragments of the 30 S ribosome of E. coli have been prepared by limited ribonuclease digestion and mild heating of the ribosome in a constant ionic environment. One such fragment has been described previously. A second electrophoretically homogeneous fragment has now been isolated and its RNA and protein moieties have been characterized. It contains the 5' half of the 16 S RNA, encompassing domains I and II except for the extreme 5' terminus and several small gaps. Seven proteins are present: S4, S5, S6, S8, S12, S15 and S20. The RNA binding sites of five of these proteins are known, and all are RNA sequences that are present in the fragment. Published neutron scattering and immuno-electron microscopic data indicate that six of the proteins are clustered together in a cross sectional slice through the center of the subunit. After deproteinization, the RNA moiety gives two bands in gel electrophoresis, one containing domains I and II and the other, essentially only domain II. The former, although larger, migrates faster in gel electrophoresis, indicating that RNA domains I and II interact with each other in such a way as to become more compact than domain II by itself.

  13. Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner.

    PubMed

    Ait Lahmidi, Nassima; Courty, Pierre-Emmanuel; Brulé, Daphnée; Chatagnier, Odile; Arnould, Christine; Doidy, Joan; Berta, Graziella; Lingua, Guido; Wipf, Daniel; Bonneau, Laurent

    2016-10-01

    Arbuscular mycorrhizal (AM) fungi are associated with about 80% of land plants. AM fungi provide inorganic nutrients to plants and in return up to 20% of the plant-fixed CO2 is transferred to the fungal symbionts. Since AM fungi are obligate biotrophs, unraveling how sugars are provided to the fungus partner is a key for understanding the functioning of the symbiosis. In this study, we identified two new monosaccharide transporters from Rhizophagus irregularis (RiMST5 and RiMST6) that we characterized as functional high affinity monosaccharide transporters. RiMST6 was characterized as a glucose specific, high affinity H(+) co-transporter. We provide experimental support for a primary role of both RiMST5 and RiMST6 in sugar uptake directly from the soil. The expression patterns of RiMSTs in response to partial light deprivation and to interaction with different host plants were investigated. Expression of genes coding for RiMSTs was transiently enhanced after 48 h of shading and was unambiguously dependent on the host plant species. These results cast doubt on the 'fair trade' principle under carbon-limiting conditions. Therefore, in light of these findings, the possible mechanisms involved in the modulation between mutualism and parasitism in plant-AM fungus interactions are discussed.

  14. Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner.

    PubMed

    Ait Lahmidi, Nassima; Courty, Pierre-Emmanuel; Brulé, Daphnée; Chatagnier, Odile; Arnould, Christine; Doidy, Joan; Berta, Graziella; Lingua, Guido; Wipf, Daniel; Bonneau, Laurent

    2016-10-01

    Arbuscular mycorrhizal (AM) fungi are associated with about 80% of land plants. AM fungi provide inorganic nutrients to plants and in return up to 20% of the plant-fixed CO2 is transferred to the fungal symbionts. Since AM fungi are obligate biotrophs, unraveling how sugars are provided to the fungus partner is a key for understanding the functioning of the symbiosis. In this study, we identified two new monosaccharide transporters from Rhizophagus irregularis (RiMST5 and RiMST6) that we characterized as functional high affinity monosaccharide transporters. RiMST6 was characterized as a glucose specific, high affinity H(+) co-transporter. We provide experimental support for a primary role of both RiMST5 and RiMST6 in sugar uptake directly from the soil. The expression patterns of RiMSTs in response to partial light deprivation and to interaction with different host plants were investigated. Expression of genes coding for RiMSTs was transiently enhanced after 48 h of shading and was unambiguously dependent on the host plant species. These results cast doubt on the 'fair trade' principle under carbon-limiting conditions. Therefore, in light of these findings, the possible mechanisms involved in the modulation between mutualism and parasitism in plant-AM fungus interactions are discussed. PMID:27362299

  15. The Transcription Factor Ehf Is Involved in TGF-β-Induced Suppression of FcεRI and c-Kit Expression and FcεRI-Mediated Activation in Mast Cells.

    PubMed

    Yamazaki, Susumu; Nakano, Nobuhiro; Honjo, Asuka; Hara, Mutsuko; Maeda, Keiko; Nishiyama, Chiharu; Kitaura, Jiro; Ohtsuka, Yoshikazu; Okumura, Ko; Ogawa, Hideoki; Shimizu, Toshiaki

    2015-10-01

    FcεRI, which is composed of α, β, and γ subunits, plays an important role in IgE-mediated allergic responses. TGF-β1 has been reported to suppress FcεRI and stem cell factor receptor c-Kit expression on mast cell surfaces and to suppress mast cell activation induced by cross-linking of FcεRI. However, the molecular mechanism by which these expressions and activation are suppressed by TGF-β1 remains unclear. In this study, we found that the expression of Ets homologous factor (Ehf), a member of the Ets family transcriptional factors, is upregulated by TGF-β/Smad signaling in mouse bone marrow-derived mast cells (BMMCs). Forced expression of Ehf in BMMCs repressed the transcription of genes encoding FcεRIα, FcεRIβ, and c-Kit, resulting in a reduction in cell surface FcεRI and c-Kit expression. Additionally, forced expression of Ehf suppressed FcεRI-mediated degranulation and cytokine production. Ehf inhibited the promoter activity of genes encoding FcεRIα, FcεRIβ, and c-Kit by binding to these gene promoters. Furthermore, the mRNA levels of Gata1, Gata2, and Stat5b were lower in BMMCs stably expressing Ehf compared with control cells. Because GATA-1 and GATA-2 are positive regulators of FcεRI and c-Kit expression, decreased expression of GATAs may be also involved in the reduction of FcεRI and c-Kit expression. Decreased expression of Stat5 may contribute to the suppression of cytokine production by BMMCs. In part, mast cell response to TGF-β1 was mimicked by forced expression of Ehf, suggesting that TGF-β1 suppresses FcεRI and c-Kit expression and suppresses FcεRI-mediated activation through upregulation of Ehf.

  16. Family Planning and Preconception Health Among Men in Their Mid-30s: Developing Indicators and Describing Need.

    PubMed

    Casey, Frances E; Sonenstein, Freya L; Astone, Nan M; Pleck, Joseph H; Dariotis, Jacinda K; Marcell, Arik V

    2016-01-01

    The Centers for Disease Control and Prevention and Healthy People 2020 call for improvements in meeting men's reproductive health needs but little is known about the proportion of men in need. This study describes men aged 35 to 39 in need of family planning and preconception care, demographic correlates of these needs, and contraception use among men in need of family planning. Using data from Wave 4 (2008-2010) of the National Survey of Adolescent Males, men were classified in need of family planning and preconception care if they reported sex with a female in the last year and believed that they and their partner were fecund; the former included men who were neither intentionally pregnant nor intending future children and the latter included men intending future children. Men were classified as being in need of both if they reported multiple sex partners in the past year. About 40% of men aged 35 to 39 were in need of family planning and about 33% in need of preconception care with 12% in need of both. Current partner's age, current union type, and sexually transmitted infection health risk differentiated men in need of family planning and preconception care (all ps < .01) and participants' race/ethnicity further differentiated men in need of preconception care (p < .01). More than half of men in need of family planning reported none of the time current partner hormonal use (55%) or condom use (52%) during the past year. This study identified that many men in their mid-30s are in need of family planning or preconception care.

  17. Reactive Collisions in Crossed Molecular Beams

    DOE R&D Accomplishments Database

    Herschbach, D. R.

    1962-02-01

    The distribution of velocity vectors of reaction products is discussed with emphasis on the restrictions imposed by the conservation laws. The recoil velocity that carries the products away from the center of mass shows how the energy of reaction is divided between internal excitation and translation. Similarly, the angular distributions, as viewed from the center of mass, reflect the partitioning of the total angular momentum between angular momenta of individual molecules and orbital angular momentum associated with their relative motion. Crossed-beam studies of several reactions of the type M + RI yields R + MI are described, where M = K, Rb, Cs, and R = CH{sub 3}, C{sub 3}H{sub 5}, etc. The results show that most of the energy of reaction goes into internal excitation of the products and that the angular distribution is quite anisotropic, with most of the MI recoiling backward (and R forward) with respect to the incoming K beam. (auth)

  18. Function of individual 30S subunit proteins of Escherichia coli. Effect of specific immunoglobulin fragments (Fab) on activities of ribosomal decoding sites.

    PubMed

    Lelong, J C; Gros, D; Gros, F; Bollen, A; Maschler, R; Stöffler, G

    1974-02-01

    Specific anti-30S protein immunoglobulin G fragments (Fab) were used to determine the contribution of each of the 30S ribosomal proteins to: (1) polyphenylalanine synthesis, (2) initiation factor-dependent binding of fMet-tRNA, (3) T-factor-dependent binding of phenylalanyl-tRNA, and (4) fixation of radioactive dihydrostreptomycin. Twenty of the 21 possible antibodies (antibody against S17 excepted) were used. In conditions where all the 30S proteins were accessible to Fabs, all of these monovalent antibodies strongly inhibited polyphenylalanine synthesis in vitro. Antibodies against S4, S6, S7, S12, S15, and S16, however, showed a weaker effect.30S proteins can be classified into four categories by their contributions to the function of sites "A" and "P": class I appears nonessential for tRNA positioning at either site (S4, S7, S15, and S16); class II includes proteins whose role in initiation is critical (S2, S5, S6, S12, and S13); class III (S8, S9, S11, and S18) corresponds to proteins whose blockade prevents internal (elongation factor Tudependent) positioning; and class IV includes entities that are essential for activities of both "A" and "P" sites (S1, S3, S10, S14, S19, S20, and S21). Dihydrostreptomycin fixation to the 30S or 70S ribosomes was inhibited by antibodies against S1, S10, S11, S18, S19, S20, and S21, but only weakly by the anti-S12 (Str A protein) Fab. The significance of these results is discussed in relation to 30S protein function, heterogeneity, and topography.

  19. Design study on the beam line for radioisotope production at KOMAC

    NASA Astrophysics Data System (ADS)

    Kwon, Hyeok-Jung

    2015-10-01

    A beam line for radioisotope (RI) production was designed for the 100-MeV proton linear accelerator at Korea Multi-purpose Accelerator Complex (KOMAC). The specifications of the beam line are such that the energy is 100 MeV and the average current is 0.6 mA for a target size of 100 mm in diameter. The system consists of a beam transport system including a magnet, a vacuum system, beam diagnostics, power supplies and a control system. The key components of the system are the high-field 45 bending magnet, the beam scanning system and beam window. In this paper, the design of the beam line and its key components are presented.

  20. Construction of an EcoRI restriction map of Mycoplasma pneumoniae and localization of selected genes.

    PubMed Central

    Wenzel, R; Pirkl, E; Herrmann, R

    1992-01-01

    A restriction map of the genome of Mycoplasma pneumoniae, a small human pathogenic bacterium, was constructed by means of an ordered cosmid library which spans the complete bacterial chromosome. The positions of 143 endonuclease EcoRI restriction fragments were determined and aligned with the physical map. In addition, restriction sites for the rare-cutting enzymes XhoI (25 sites), ApaI (13 sites), NotI (2 sites), and SfiI (2 sites) were included. The resulting map consists of 185 restriction sites, has a mean resolution of 4.4 kbp, and predicts a genome size of 809 kbp. In addition, several genes were identified and mapped to their respective genomic EcoRI restriction fragments. Images PMID:1429453

  1. RiSA: A Science Festival for the Bilingual and Bicultural Rio Grande Valley

    NASA Astrophysics Data System (ADS)

    Key, Joey Shapiro; Torres, Cristina; Stone, Robert

    2014-03-01

    The Rio Grande Science and Arts (RiSA) Festival organized by the Center for Gravitational Wave Astronomy (CGWA) at the University of Texas at Brownsville (UTB) will use a wide variety of artforms to bring physics and science topics to the bilingual and bicultural population of the Rio Grande Valley of South Texas. The science and art faculty at UTB will partner with art and education professionals to create an annual community event celebrating science though art. Music, dance, poetry, and visual arts will headline the festival activities. Festival events and products will be produced in both English and Spanish to attract and inform the bilingual local community. The RiSA Festival is supported by the Science Festival Alliance and the Sloan Foundation. Supported by the Science Festival Alliance and the Sloan Foundation.

  2. Cirsium semzinanicum (Asteraceae), a new species from Hakkâri, Turkey

    PubMed Central

    Fırat, Mehmet

    2016-01-01

    Abstract Cirsium semzinanicum sp. nov. (Asteraceae) is described as a new species from Hakkâri, Turkey. The new species is a part of the sect. Epitrachys (Cardueae) and similar to Cirsium karduchorum, from which it differs in morphological characters such as leaves, involucre, phyllaries, corolla, achens and pollen morphology. Geographical distribution, habitat and IUCN conservation status of this species are given. PMID:27698575

  3. Characterization of highly and moderately repetitive 500 bp Eco RI fragments from Xenopus laevis DNA.

    PubMed Central

    Hummel, S; Meyerhof, W; Korge, E; Knöchel, W

    1984-01-01

    Three different types of repetitive Eco RI fragments, which comigrate within a visible band of approximately 500 bp at gel electrophoresis of Xenopus laevis DNA Eco RI digests have been cloned and sequenced. These sequences are designated as Repetitive Eco RI Monomers: REM 1, REM 2 and REM 3. The sequences contain direct repeats, inverted repeats and palindromic elements. Genomic organization of the most abundant sequence (REM 1; 0.4% of total DNA) is that of an interspersed sequence. REM 2 (0.08%) is partly organized as an interspersed element and partly found in tandem arrangement, whereas REM 3 (0.02%) represents the tandemly repeated monomeric unit of a satellite DNA. In situ hybridization has shown that REM 1 and REM 2 sequences are found on most chromosomes, REM 1 being preferentially located on specific chromosomal loci. REM 3 is located near the centromere region of only one chromosome pair (presumably number 1). Hybridization of Northern blots from RNAs of different developmental stages revealed that REM 1, REM 2 and REM 3 sequences are transcribed and that transcription is under developmental control. Images PMID:6330690

  4. Structure of D-AKAP2:PKA RI Complex: Insights into AKAP Specificity and Selectivity

    SciTech Connect

    Sarma, Ganapathy N.; Kinderman, Francis S.; Kim, Choel; von Daake, Sventja; Chen, Lirong; Wang, Bi-Cheng; Taylor, Susan S.

    2010-11-22

    A-kinase anchoring proteins (AKAPs) regulate cyclic AMP-dependent protein kinase (PKA) signaling in space and time. Dual-specific AKAP 2 (D-AKAP2) binds to the dimerization/docking (D/D) domain of both RI and RII regulatory subunits of PKA with high affinity. Here we have determined the structures of the RI{alpha} D/D domain alone and in complex with D-AKAP2. The D/D domain presents an extensive surface for binding through a well-formed N-terminal helix, and this surface restricts the diversity of AKAPs that can interact. The structures also underscore the importance of a redox-sensitive disulfide in affecting AKAP binding. An unexpected shift in the helical register of D-AKAP2 compared to the RII{alpha}:D-AKAP2 complex structure makes the mode of binding to RI{alpha} novel. Finally, the comparison allows us to deduce a molecular explanation for the sequence and spatial determinants of AKAP specificity.

  5. The Importance of Human FcγRI in Mediating Protection to Malaria

    PubMed Central

    de Koning-Ward, Tania F; Smith, Tim; Green, Judith; van Egmond, Marjolein; Leusen, Jeanette H. W; Lazarou, Maria; van de Winkel, Jan; Jones, Tarran S; Crabb, Brendan S; Holder, Anthony A; Pleass, Richard J

    2007-01-01

    The success of passive immunization suggests that antibody-based therapies will be effective at controlling malaria. We describe the development of fully human antibodies specific for Plasmodium falciparum by antibody repertoire cloning from phage display libraries generated from immune Gambian adults. Although these novel reagents bind with strong affinity to malaria parasites, it remains unclear if in vitro assays are predictive of functional immunity in humans, due to the lack of suitable animal models permissive for P. falciparum. A potentially useful solution described herein allows the antimalarial efficacy of human antibodies to be determined using rodent malaria parasites transgenic for P. falciparum antigens in mice also transgenic for human Fc-receptors. These human IgG1s cured animals of an otherwise lethal malaria infection, and protection was crucially dependent on human FcγRI. This important finding documents the capacity of FcγRI to mediate potent antimalaria immunity and supports the development of FcγRI-directed therapy for human malaria. PMID:17511516

  6. Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction

    PubMed Central

    Gobeill, Julien; Tbahriti, Imad; Ehrler, Frédéric; Mottaz, Anaïs; Veuthey, Anne-Lise; Ruch, Patrick

    2008-01-01

    Background This paper describes and evaluates a sentence selection engine that extracts a GeneRiF (Gene Reference into Functions) as defined in ENTREZ-Gene based on a MEDLINE record. Inputs for this task include both a gene and a pointer to a MEDLINE reference. In the suggested approach we merge two independent sentence extraction strategies. The first proposed strategy (LASt) uses argumentative features, inspired by discourse-analysis models. The second extraction scheme (GOEx) uses an automatic text categorizer to estimate the density of Gene Ontology categories in every sentence; thus providing a full ranking of all possible candidate GeneRiFs. A combination of the two approaches is proposed, which also aims at reducing the size of the selected segment by filtering out non-content bearing rhetorical phrases. Results Based on the TREC-2003 Genomics collection for GeneRiF identification, the LASt extraction strategy is already competitive (52.78%). When used in a combined approach, the extraction task clearly shows improvement, achieving a Dice score of over 57% (+10%). Conclusions Argumentative representation levels and conceptual density estimation using Gene Ontology contents appear complementary for functional annotation in proteomics. PMID:18426554

  7. Cellular trafficking of the IL-1RI-associated kinase-1 requires intact kinase activity

    SciTech Connect

    Boel, Gaby-Fleur . E-mail: boel@mail.dife.de; Jurrmann, Nadine; Brigelius-Flohe, Regina

    2005-06-24

    Upon stimulation of cells with interleukin-1 (IL-1) the IL-1 receptor type I (IL-1RI) associated kinase-1 (IRAK-1) transiently associates to and dissociates from the IL-1RI and thereafter translocates into the nucleus. Here we show that nuclear translocation of IRAK-1 depends on its kinase activity since translocation was not observed in EL-4 cells overexpressing a kinase negative IRAK-1 mutant (EL-4{sup IRAK-1-K239S}). IRAK-1 itself, an endogenous substrate with an apparent molecular weight of 24 kDa (p24), and exogenous substrates like histone and myelin basic protein are phosphorylated by nuclear located IRAK-1. Phosphorylation of p24 cannot be detected in EL-4{sup IRAK-1-K239S} cells. IL-1-dependent recruitment of IRAK-1 to the IL-1RI and subsequent phosphorylation of IRAK-1 is a prerequisite for nuclear translocation of IRAK-1. It is therefore concluded that intracellular localization of IRAK-1 depends on its kinase activity and that IRAK-1 may also function as a kinase in the nucleus as shown by a new putative endogenous substrate.

  8. Structural and Thermodymamic Basis for Enhanced DNA Binding by a Promiscuous Mutant EcoRI Endonuclease

    SciTech Connect

    Sapienza,P.; Rosenberg, J.; Jen-Jacobson, L.

    2007-01-01

    Promiscuous mutant EcoRI endonucleases bind to the canonical site GAATTC more tightly than does the wild-type endonuclease, yet cleave variant (EcoRI*) sites more rapidly than does wild-type. The crystal structure of the A138T promiscuous mutant homodimer in complex with a GAATTC site is nearly identical to that of the wild-type complex, except that the Thr138 side chains make packing interactions with bases in the 5'-flanking regions outside the recognition hexanucleotide while excluding two bound water molecules seen in the wild-type complex. Molecular dynamics simulations confirm exclusion of these waters. The structure and simulations suggest possible reasons why binding of the A138T protein to the GAATTC site has S more favorable and H less favorable than for wild-type endonuclease binding. The interactions of Thr138 with flanking bases may permit A138T, unlike wild-type enzyme, to form complexes with EcoRI* sites that structurally resemble the specific wild-type complex with GAATTC.

  9. Beam tuning

    SciTech Connect

    Pardo, R.C.; Zinkann, G.P.

    1995-08-01

    A program for configuring the linac, based on previously run configurations for any desired beam was used during the past year. This program uses only a small number of empirical tunes to scale resonator fields to properly accelerate a beam with a different charge-to-mass (q/A) ratio from the original tune configuration. The program worked very well for the PII linac section where we can easily match a new beam`s arrival phase and velocity to the tuned value. It was also fairly successful for the Booster and ATLAS sections of the linac, but not as successful as for the PII linac. Most of the problems are associated with setting the beam arrival time correctly for each major linac section. This problem is being addressed with the development of the capacitive pickup beam phase monitor discussed above. During the next year we expect to improve our ability to quickly configure the linac for new beams and reduce the time required for linac tuning. Already the time required for linac tuning as a percentage of research hours has decreased from 22% in FY 1993 to 15% in the first quarter of FY 1995.

  10. Some Challenges of an “Upside Down” Nitrogen Budget – Science and Management in Greenwich Bay, RI (USA)

    EPA Science Inventory

    When nutrients impact estuarine water quality, scientists and managers instinctively focus on quantifying and controlling land-based sources. However, in Greenwich Bay, RI, the estuary opens onto a larger and more intensively fertilized coastal water body (Narragansett Bay). Prev...

  11. Fluorogen-activating proteins provide tunable labeling densities for tracking FcεRI independent of IgE.

    PubMed

    Schwartz, Samantha L; Yan, Qi; Telmer, Cheryl A; Lidke, Keith A; Bruchez, Marcel P; Lidke, Diane S

    2015-02-20

    Crosslinking of IgE bound FcεRI on mast cells and basophils by multivalent antigen leads to degranulation and the release of key inflammatory mediators that stimulate the allergic response. Here, we present and characterize the use of fluorogen-activating proteins (FAPs) for single particle tracking of FcεRI to investigate how receptor mobility is influenced after IgE-induced changes in mast cell behavior. FAPs are genetically encoded tags that bind a fluorogen dye and increase its brightness upon binding up to 20,000-fold. We demonstrate that, by titrating fluorogen concentration, labeling densities from ensemble to single particle can be achieved, independent of expression level and without the need for wash steps or photobleaching. The FcεRI γ-subunit fused to a FAP (FAP-γ) provides, for the first time, an IgE-independent probe for tracking this signaling subunit of FcεRI at the single molecule level. We show that the FcεRI γ-subunit dynamics are controlled by the IgE-binding α-subunit and that the cytokinergic IgE, SPE-7, induces mast cell activation without altering FcεRI mobility or promoting internalization. We take advantage of the far-red emission of the malachite green (MG) fluorogen to track FcεRI relative to dynamin-GFP and find that immobilized receptors readily correlate with locations of dynamin recruitment only under conditions that promote rapid endocytosis. These studies demonstrate the usefulness of the FAP system for single molecule studies and have provided new insights into the relationship among FcεRI structure, activity, and mobility. PMID:25343439

  12. How to Reliably Determine the Complex Refractive Index (RI) of Graphene by Using Two Independent Measurement Constraints

    PubMed Central

    Cheon, Sosan; Kihm, Kenneth David; Kim, Hong goo; Lim, Gyumin; Park, Jae Sung; Lee, Joon Sik

    2014-01-01

    Reliable determination of the complex refractive index (RI) of graphene inherently requires two independent measurement realizations for two independent unknowns of the real (nG) and imaginary (kG) components, i.e., RI = nG + i kG. Thus, any single set of measurement realization provides only one constraint that is insufficient to uniquely determine the complex RI of graphene. Tandem uses of two independent measurement techniques, namely the surface plasmon resonance (SPR) angle detection and the attenuated total reflection (ATR) intensity measurement, allow for the unique determination of the complex RI of CVD-synthesized graphene. The presently measured graphene RI is determined to be 2.65 + 1.27i for the E-field oscillating parallel to graphene at 634 nm wavelength, with variations for different numbers of L (1, 3 and 5) remaining within ±3%. Thus, our demonstration results for the specified wavelength serve as an impetus to suggest the need for two independent measurement techniques in determining both the real and imaginary RI values for graphene. Additional efforts have been made to characterize graphene layers using the density function theory (DFT): this calculation provides RIG = 2.71 + 1.41i. PMID:25219628

  13. The identification of spermine binding sites in 16S rRNA allows interpretation of the spermine effect on ribosomal 30S subunit functions

    PubMed Central

    Amarantos, Ioannis; Zarkadis, Ioannis K.; Kalpaxis, Dimitrios L.

    2002-01-01

    A photoreactive analogue of spermine, N1-azidobenzamidino (ABA)-spermine, was covalently attached after irradiation to Escherichia coli 30S ribosomal subunits or naked 16S rRNA. By means of RNase H digestion and primer extension, the cross-linking sites of ABA-spermine in naked 16S rRNA were characterised and compared with those identified in 30S subunits. The 5′ domain, the internal and terminal loops of helix H24, as well as the upper part of helix H44 in naked 16S rRNA, were found to be preferable binding sites for polyamines. Association of 16S rRNA with ribosomal proteins facilitated its interaction with photoprobe, except for 530 stem–loop nt, whose modification by ABA-spermine was abolished. Association of 30S with 50S subunits, poly(U) and AcPhe-tRNA (complex C) further altered the susceptibility of ABA-spermine cross-linking to 16S rRNA. Complex C, modified in its 30S subunit by ABA-spermine, reacted with puromycin similarly to non-photolabelled complex. On the contrary, poly(U)-programmed 70S ribosomes reconstituted from photolabelled 30S subunits and untreated 50S subunits bound AcPhe-tRNA more efficiently than untreated ribosomes, but were less able to recognise and reject near cognate aminoacyl-tRNA. The above can be interpreted in terms of conformational changes in 16S rRNA, induced by the incorporation of ABA-spermine. PMID:12087167

  14. Beam-beam deflection and signature curves for elliptic beams

    SciTech Connect

    Ziemann, V.

    1990-10-22

    In this note we will present closed expressions for the beam-beam deflection angle for arbitrary elliptic beams including tilt. From these expressions signature curves, i.e., systematic deviations from the round beam deflection curve due to ellipticity or tilt are derived. In the course of the presentation we will prove that it is generally impossible to infer individual beam sizes from beam-beam deflection scans. 3 refs., 2 figs.

  15. Asia Rice Crop Estimation and Monitoring (Asia-RiCE) for GEOGLAM

    NASA Astrophysics Data System (ADS)

    Oyoshi, K.; Tomiyama, N.; Okumura, T.; Sobue, S.

    2013-12-01

    Food security is a critical issue for the international community because of rapid population and economic growth, and climate change. In June 2011, the meeting of G20 agriculture ministers was held to discuss food security and food price volatility, and they agreed on an 'Action Plan on Food Price Volatility and Agriculture'. This plan includes a GEO Global Agricultural Monitoring (GEOGLAM) initiative. The aim of GEOGLAM is to reinforce the international community's ability to produce and disseminate relevant, timely, and accurate forecasts of agricultural production on regional, national, and global scales by utilizing remote sensing technology. GEOGLAM focused on four major grain crops, wheat, maize, soybeans and rice. In particular, Asian countries are responsible for approximately 90% of the world rice production and consumption, rice is the most significant cereal crop in Asian region. Hence, Asian space and agricultural agencies with an interest in the development of rice crop monitoring technology launched an Asia-Rice Crop Estimation & Monitoring (Asia-RiCE) component for the GEOGLAM initiative. In Asian region, rice is mainly cultivated in rainy season, and a large amount of cloud limits rice crop monitoring with optical sensors. But, Synthetic Aperture RADAR (SAR) is all-weather sensor and can observe land surface even if the area is covered by cloud. Therefore, SAR technology would be powerful tool to monitor rice crop in Asian region. Asia-RiCE team required mainly SAR observation data including ALOS-2, RISAT-1, Sentinel-1 and RADARSAT, TerraSAR-X, COSMO-SkyMed for Asia-RiCE GEOGLAM Phase 1 implementation (2013-2015) to the Committee on Earth Observations (CEOS) in the GEOGLAM-CEOS Global Agricultural Monitoring Co-community Meeting held in June 2013. And also, rice crop has complicated cropping systems such as rein-fed or irrigated cultivation, single, double or sometimes triple cropping. In addition, each agricultural field is smaller than that of

  16. Fyn kinase controls Fc{epsilon}RI receptor-operated calcium entry necessary for full degranulation in mast cells

    SciTech Connect

    Sanchez-Miranda, Elizabeth; Ibarra-Sanchez, Alfredo; Gonzalez-Espinosa, Claudia

    2010-01-22

    IgE-antigen-dependent crosslinking of the high affinity IgE receptor (Fc{epsilon}RI) on mast cells leads to degranulation, leukotriene synthesis and cytokine production. Calcium (Ca{sup 2+}) mobilization is a sine qua non requisite for degranulation, allowing the rapid secretion of stored pro-inflammatory mediators responsible for allergy symptoms. Fyn is a Src-family kinase that positively controls Fc{epsilon}RI-induced mast cell degranulation. However, our understanding of the mechanism connecting Fyn activation to secretion of pre-synthesized mediators is very limited. We analyzed Fc{epsilon}RI-dependent Ca{sup 2+} mobilization in bone marrow-derived mast cells (BMMCs) differentiated from WT and Fyn -/- knock out mice. Fyn -/- BMMCs showed a marked defect in extracellular Ca{sup 2+} influx after Fc{epsilon}RI crosslinking but not after thapsigargin addition. High concentrations of Gadolinium (Gd{sup 3+}) partially blocked Fc{epsilon}RI-induced Ca{sup 2+} influx in WT cells but, in contrast, completely inhibited Ca{sup 2+} mobilization in Fyn -/- cells. Low concentrations of an inhibitor of the canonical transient receptor potential (TRPC) Ca{sup 2+} channels (2-aminoethoxyphenyl-borane, 2-APB) blocked Fc{epsilon}RI-induced maximal Ca{sup 2+} rise in WT but not in Fyn -/- cells. Ca{sup 2+} entry through Fyn-controlled, 2-APB sensitive channels was found to be important for full degranulation and IL-2 mRNA accumulation in WT cells. Immunoprecipitation assays showed that Fyn kinase interacts with TRPC 3/6/7 channels after IgE-antigen stimulation, but its association is not related to protein tyrosine phosphorylation. Results indicate Fyn kinase mediates the receptor-dependent activation of TRPC channels that contribute to degranulation in Fc{epsilon}RI-stimulated mast cells.

  17. Beam loss

    NASA Astrophysics Data System (ADS)

    VanGinneken, A.; Edwards, D.; Harrison, M.

    1989-04-01

    This paper presents results from simulations of beam losses during the operation of a superconducting accelerator. The calculations use a combination of hadron/electromagnetic cascade plus elastic scattering codes with accelerator tracking routines. These calculations have been used in conjunction with the design of the Fermilab Tevatron. First accelerator geometry is described. The rest of the paper discusses a detailed attempt to simulate a fast extraction cycle, essentially in chronological order. Beginning with an unperturbed beam, the simulation generates proton phase-space distributions incident on the electrostatic septum. These interact either elastically or inelastically with the septum wires, and the products of these interactions are traced through the machine. Where these leave the accelerator, energy deposition levels in the magnets are calculated together with the projected response of the beam-loss monitors in this region. Finally, results of the calculation are compared with experimental data. (AIP)

  18. Transcriptome networks in the mouse retina: An exon level BXD RI database

    PubMed Central

    King, Rebecca; Lu, Lu; Williams, Robert W.

    2015-01-01

    Purpose Differences in gene expression provide diverse retina phenotypes and may also contribute to susceptibility to injury and disease. The present study defines the transcriptome of the retina in the BXD RI strain set, using the Affymetrix Mouse Gene 2.0 ST array to investigate all exons of traditional protein coding genes, non-coding RNAs, and microRNAs. These data are presented in a highly interactive database on the GeneNetwork website. Methods In the Normal Retina Database, the mRNA levels of the transcriptome from retinas was quantified using the Affymetrix Mouse Gene 2.0 ST array. This database consists of data from male and female mice. The data set includes a total of 52 BXD RI strains, the parental strains (C57BL/6J and DBA/2J), and a reciprocal cross. Results In combination with GeneNetwork, the Department of Defense (DoD) Congressionally Directed Medical Research Programs (CDMRP) Normal Retina Database provides a large resource for mapping, graphing, analyzing, and testing complex genetic networks. Protein-coding and non-coding RNAs can be used to map quantitative trait loci (QTLs) that contribute to expression differences among the BXD strains and to establish links between classical ocular phenotypes associated with differences in the genomic sequence. Using this resource, we extracted transcriptome signatures for retinal cells and defined genetic networks associated with the maintenance of the normal retina. Furthermore, we examined differentially expressed exons within a single gene. Conclusions The high level of variation in mRNA levels found among the BXD RI strains makes it possible to identify expression networks that underline differences in retina structure and function. Ultimately, we will use this database to define changes that occur following blast injury to the retina. PMID:26604663

  19. [Paraneoplastic limbic encephalitis with positive anti-RI antibodies and mediastinal seminoma].

    PubMed

    Launay, M; Bozzolo, E; Venissac, N; Delmont, E; Fredenrich, A; Thomas, P

    2008-01-01

    We report the case of a 49-year-old man who was admitted for progressive behaviorial disorders with frontal elements. There was no sensorial nor motor deficiency. Clinical examination revealed android obesity, cutaneous and mucous paleness, pubic and axillary depilation and gynecomastia. Encephalic MRI found a lesion of the left amygdalian region with high T2 intensity and low T1 intensity associated with gadolinium-enhancement. Cerebrospinal fluid analysis showed a lymphocytic meningitis. Panhypopituitarism was found on the endocrine investigations. Anti-RI antibodies were positive, leading to the diagnosis of paraneoplastic limbic encephalitis. The CT-scan showed a node of the lower part of the thymic area. Surgical resection revealed an ectopic mediastinal seminoma. The evolution consisted of paraneoplastic fever and crossed-syndrome with right hemiparesia and left common oculomotor nerve paralysis. Treatment was completed by two cycles of carboplatin, corticosteroids and substitutive opotherapy. Paraneoplastic fever disappeared, but behavioral disorders and palsy remain unchanged. The patient died two years later in a bedridden state. This case of paraneoplastic limbic encephalitis associated with positive anti-RI antibodies and mediastinal seminoma is exceptional and has not to our knowledge been described in the literature. Cancers usually associated with anti-RI antibody are breast and lung cancer. Paraneoplastic limbic encephalitis is not the classical clinical presentation, which usually is brainstem encephalitis. Hypothalamic involvement, uncommon in paraneoplastic limbic encephalitis is mainly associated with positive antineuronal anti-Ma2 antibodies. Finally, the gadolinium enhancement on encephalic MRI is unusual in paraneoplastic limbic encephalitis. PMID:18565362

  20. U BV RI PHOTOMETRIC STANDARD STARS AROUND THE SKY AT +50 deg DECLINATION

    SciTech Connect

    Landolt, Arlo U.

    2013-11-01

    U BV RI photoelectric observations have been made of 335 stars around the sky, and centered approximately at +50 deg declination. The majority of the stars fall in the magnitude range 9 < V < 16, and in the color range –0.3 < (B – V) < +1.8. Those 243 stars best suited as new broadband photometric standard stars average 12.5 measures each from data taken on 98 different nights over a period of 17 years at the Kitt Peak National and Lowell Observatories.

  1. Polymer nanocomposite films with extremely high nanoparticle loadings via capillary rise infiltration (CaRI)

    NASA Astrophysics Data System (ADS)

    Huang, Yun-Ru; Jiang, Yijie; Hor, Jyo Lyn; Gupta, Rohini; Zhang, Lei; Stebe, Kathleen J.; Feng, Gang; Turner, Kevin T.; Lee, Daeyeon

    2014-12-01

    Polymer nanocomposite films (PNCFs) with extremely high concentrations of nanoparticles are important components in energy storage and conversion devices and also find use as protective coatings in various applications. PNCFs with high loadings of nanoparticles, however, are difficult to prepare because of the poor processability of polymer-nanoparticle mixtures with high concentrations of nanoparticles even at an elevated temperature. This problem is exacerbated when anisotropic nanoparticles are the desired filler materials. Here we report a straightforward method for generating PNCFs with extremely high loadings of nanoparticles. Our method is based on what we call capillary rise infiltration (CaRI) of polymer into a dense packing of nanoparticles. CaRI consists of two simple steps: (1) the preparation of a two-layer film, consisting of a porous layer of nanoparticles and a layer of polymer and (2) annealing of the bilayer structure above the temperature that imparts mobility to the polymer (e.g., glass transition of the polymer). The second step leads to polymer infiltration into the interstices of the nanoparticle layer, reminiscent of the capillary rise of simple fluid into a narrow capillary or a packing of granules. We use in situ spectroscopic ellipsometry and a three-layer Cauchy model to follow the capillary rise of polystyrene into the random network of nanoparticles. The infiltration of polystyrene into a densely packed TiO2 nanoparticle layer is shown to follow the classical Lucas-Washburn type of behaviour. We also demonstrate that PNCFs with densely packed anisotropic TiO2 nanoparticles can be readily generated by spin coating anisotropic TiO2 nanoparticles atop a polystyrene film and subsequently thermally annealing the bilayer film. We show that CaRI leads to PNCFs with modulus, hardness and scratch resistance that are far superior to the properties of films of the component materials. In addition, CaRI fills in cracks that may exist in the

  2. A new EcoRI polymorphism at the D21S13 locus.

    PubMed

    Pulst, S M; Korenberg, J R; Greenwald, J; Carbone, M

    1990-05-01

    The D21S13 locus has shown linkage to a gene for familial Alzheimer disease (FAD) on chromosome 21 (St. George-Hyslop et al. 1987). The limited informativeness of probes for this locus have hindered precise mapping of the FAD locus and analysis of nonallelic heterogeneity in FAD (Schellenberg et al. 1988; St. George-Hyslop et al. 1987). We describe a new EcoRI polymorphism at the D21S13 locus that may be useful for the further study of FAD families.

  3. High level of skeletal muscle carnosine contributes to the latter half of exercise performance during 30-s maximal cycle ergometer sprinting.

    PubMed

    Suzuki, Yasuhiro; Ito, Osamu; Mukai, Naoki; Takahashi, Hideyuki; Takamatsu, Kaoru

    2002-04-01

    The histidine-containing dipeptide carnosine (beta-alanyl-L-histidine) has been shown to significantly contribute to the physicochemical buffering in skeletal muscles, which maintains acid-base balance when a large quantity of H(+) is produced in association with lactic acid accumulation during high-intensity exercise. The purpose of the present study was to examine the relations among the skeletal muscle carnosine concentration, fiber-type distribution, and high-intensity exercise performance. The subjects were 11 healthy men. Muscle biopsy samples were taken from the vastus lateralis at rest. The carnosine concentration was determined by the use of an amino acid autoanalyzer. The fiber-type distribution was determined by the staining intensity of myosin adenosinetriphosphatase. The high-intensity exercise performance was assessed by the use of 30-s maximal cycle ergometer sprinting. A significant correlation was demonstrated between the carnosine concentration and the type IIX fiber composition (r=0.646, p<0.05). The carnosine concentration was significantly correlated with the mean power per body mass (r=0.785, p<0.01) during the 30-s sprinting. When dividing the sprinting into 6 phases (0-5, 6-10, 11-15, 16-20, 21-25, 26-30 s), significant correlations were observed between the carnosine concentration and the mean power per body mass of the final 2 phases (21-25 s: r=0.694, p<0.05; 26-30 s: r=0.660, p<0.05). These results indicated that the carnosine concentration could be an important factor in determining the high-intensity exercise performance.

  4. Assembly of the 30S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by S4 and S7.

    PubMed

    Nowotny, V; Nierhaus, K H

    1988-09-01

    A protein which initiates assembly of ribosomes is defined as a protein which binds to the respective rRNA without cooperativity (i.e., without the help of other proteins) during the onset of assembly and is essential for the formation of active ribosomal subunits. The number of proteins binding without cooperativity was determined by monitoring the reconstitution output of active particles at various inputs of 16S rRNA, in the presence of constant amounts of 30S-derived proteins (TP30): This showed that only two of the proteins of the 30S subunit are assembly-initiator proteins. These two proteins are still present on a LiCl core particle comprising 16S rRNA and 12 proteins (including minor proteins). The 12 proteins were isolated, and a series of reconstitution experiments at various levels of rRNA excess demonstrated that S4 and S7 are the initiator proteins. Pulse-chase experiments performed during the early assembly with 14C- and 3H-labeled TP30 and the determination of the 14C/3H ratio of the individual proteins within the assembled particles revealed a bilobal structure of the 30S assembly: A group of six proteins headed by S4 (namely, S4, S20, S16, S15, S6, and S18) resisted the chasing most efficiently (S4 assembly domain). None of the proteins depending on S7 during assembly were found in this group but rather in a second group with intermediate chasing stability [S7 assembly domain; consisting of S7, S9, (S8), S19, and S3]. A number of proteins could be fully chased during the early assembly and therefore represent "late assembly proteins" (S10, S5, S13, S2, S21, S1). These findings fit well with the 30S assembly map.(ABSTRACT TRUNCATED AT 250 WORDS)

  5. Involvement of Bruton's Tyrosine Kinase in FcεRI-dependent Mast Cell Degranulation and Cytokine Production

    PubMed Central

    Hata, Daisuke; Kawakami, Yuko; Inagaki, Naoki; Lantz, Chris S.; Kitamura, Toshio; Khan, Wasif N.; Maeda-Yamamoto, Mari; Miura, Toru; Han, Wei; Hartman, Stephen E.; Yao, Libo; Nagai, Hiroichi; Goldfeld, Anne E.; Alt, Frederick W.; Galli, Stephen J.; Witte, Owen N.; Kawakami, Toshiaki

    1998-01-01

    We investigated the role of Bruton's tyrosine kinase (Btk) in FcεRI-dependent activation of mouse mast cells, using xid and btk null mutant mice. Unlike B cell development, mast cell development is apparently normal in these btk mutant mice. However, mast cells derived from these mice exhibited significant abnormalities in FcεRI-dependent function. xid mice primed with anti-dinitrophenyl monoclonal IgE antibody exhibited mildly diminished early-phase and severely blunted late-phase anaphylactic reactions in response to antigen challenge in vivo. Consistent with this finding, cultured mast cells derived from the bone marrow cells of xid or btk null mice exhibited mild impairments in degranulation, and more profound defects in the production of several cytokines, upon FcεRI cross-linking. Moreover, the transcriptional activities of these cytokine genes were severely reduced in FcεRI-stimulated btk mutant mast cells. The specificity of these effects of btk mutations was confirmed by the improvement in the ability of btk mutant mast cells to degranulate and to secrete cytokines after the retroviral transfer of wild-type btk cDNA, but not of vector or kinase-dead btk cDNA. Retroviral transfer of Emt (= Itk/Tsk), Btk's closest relative, also partially improved the ability of btk mutant mast cells to secrete mediators. Taken together, these results demonstrate an important role for Btk in the full expression of FcεRI signal transduction in mast cells. PMID:9547335

  6. Design of an rf separation system for a proton-rich radioisotope beam produced by using an in-flight fragment separator

    NASA Astrophysics Data System (ADS)

    Kim, Myeongjin; Yun, Chong-Cheol; Kim, Jong-Won; Lee, Jaeyu

    2013-03-01

    An in-flight fragment separator is a device to separate a radioisotope (RI) beam of interest produced by bombarding a thin target with a primary heavy-beam usually of high intensity. The isotope beam separation is done by momentum dispersion of dipole magnets and energy loss in a wedge-shaped degrader. However, this separation method is not sufficient for proton-rich isotope beams because their momenta tend to overlap with the low-momentum tails of more abundant fragments produced with larger cross sections. An additional separation technique, which relies on the velocity difference in the isotope beams, can be used to enhance the purity of the desired isotope beam. A separation system based on an rf-kicker was considered, and its beam line was designed using the TRANSPORT and the COSY INFINITY codes. Trajectories and vertical separations of the RI beams were calculated using the LISE++ code. The background isotope beam can be greatly reduced with the use of the rf separator system, but transmission of the isotope beam may be reduced by the aperture of the rf kicker. The lower rf frequency of the primary beam is an important factor in adopting the rf separator system. The electromagnetic design of the rf-kicker was studied.

  7. Barriers to Health Insurance Pre- and Post-Affordable Care Act Implementation in Providence, RI.

    PubMed

    Pigoga, Jennifer; Kibria, Farzana; Pinilla, Mauricio; Bicki, Alexandra; Joseph, Valerie; De Groot, Anne S

    2015-12-01

    The impact of healthcare reform under the Affordable Care Act (ACA) on individuals living in cities has not yet been quantified by local Departments of Health. This makes it difficult for safety net sources of healthcare, such as free clinics, to plan for the future. Therefore, members of Clinica Esperanza/Hope Clinic conducted a survey in predominantly Latino communities of South and West Providence, RI, using a convenience sample method (N = 206). Survey results were compared to a prior survey conducted in the same communities prior to ACA implementation. Despite gains due to Obamacare, a much higher level of uninsurance was reported in this survey than has been reported statewide. In 2014, as compared to 2010, 48% vs. 95% of respondents reported being uninsured, and more held private (20% vs. 5%) or government-subsidized health insurance (32% vs. 1%). Undocumented immigration status and cost were the two most commonly reported reasons for remaining uninsured under the ACA. First-generation immigrants living in urban centers are still reporting significantly higher rates of uninsurance (48%) than the general population in RI (7.4%). PMID:26623454

  8. Tim-3 enhances FcεRI-proximal signaling to modulate mast cell activation.

    PubMed

    Phong, Binh L; Avery, Lyndsay; Sumpter, Tina L; Gorman, Jacob V; Watkins, Simon C; Colgan, John D; Kane, Lawrence P

    2015-12-14

    T cell (or transmembrane) immunoglobulin and mucin domain protein 3 (Tim-3) has attracted significant attention as a novel immune checkpoint receptor (ICR) on chronically stimulated, often dysfunctional, T cells. Antibodies to Tim-3 can enhance antiviral and antitumor immune responses. Tim-3 is also constitutively expressed by mast cells, NK cells and specific subsets of macrophages and dendritic cells. There is ample evidence for a positive role for Tim-3 in these latter cell types, which is at odds with the model of Tim-3 as an inhibitory molecule on T cells. At this point, little is known about the molecular mechanisms by which Tim-3 regulates the function of T cells or other cell types. We have focused on defining the effects of Tim-3 ligation on mast cell activation, as these cells constitutively express Tim-3 and are activated through an ITAM-containing receptor for IgE (FcεRI), using signaling pathways analogous to those in T cells. Using a variety of gain- and loss-of-function approaches, we find that Tim-3 acts at a receptor-proximal point to enhance Lyn kinase-dependent signaling pathways that modulate both immediate-phase degranulation and late-phase cytokine production downstream of FcεRI ligation.

  9. Structure of the DNA-Eco RI endonuclease recognition complex at 3 A resolution.

    PubMed

    McClarin, J A; Frederick, C A; Wang, B C; Greene, P; Boyer, H W; Grable, J; Rosenberg, J M

    1986-12-19

    The crystal structure of the complex between Eco RI endonuclease and the cognate oligonucleotide TCGCGAATTCGCG provides a detailed example of the structural basis of sequence-specific DNA-protein interactions. The structure was determined, to 3 A resolution, by the ISIR (iterative single isomorphous replacement) method with a platinum isomorphous derivative. The complex has twofold symmetry. Each subunit of the endonuclease is organized into an alpha/beta domain consisting a five-stranded beta sheet, alpha helices, and an extension, called the "arm," which wraps around the DNA. The large beta sheet consists of antiparallel and parallel motifs that form the foundations for the loops and alpha helices responsible for DNA strand scission and sequence-specific recognition, respectively. The DNA cleavage site is located in a cleft that binds the DNA backbone in the vicinity of the scissile bond. Sequence specificity is mediated by 12 hydrogen bonds originating from alpha helical recognition modules. Arg200 forms two hydrogen bonds with guanine while Glu144 and Arg145 form four hydrogen bonds to adjacent adenine residues. These interactions discriminate the Eco RI hexanucleotide GAATTC from all other hexanucleotides because any base substitution would require rupture of at least one of these hydrogen bonds.

  10. Differences between EcoRI nonspecific and "star" sequence complexes revealed by osmotic stress.

    PubMed

    Sidorova, Nina Y; Rau, Donald C

    2004-10-01

    The binding of the restriction endonuclease EcoRI to DNA is exceptionally specific. Even a single basepair change ("star" sequence) from the recognition sequence, GAATTC, decreases the binding free energy of EcoRI to values nearly indistinguishable from nonspecific binding. The difference in the number of waters sequestered by the protein-DNA complexes of the "star" sequences TAATTC and CAATTC and by the specific sequence complex determined from the dependence of binding free energy on water activity is also practically indistinguishable at low osmotic pressures from the 110 water molecules sequestered by nonspecific sequence complexes. Novel measurements of the dissociation rates of noncognate sequence complexes and competition equilibrium show that sequestered water can be removed from "star" sequence complexes by high osmotic pressure, but not from a nonspecific complex. By 5 Osm, the TAATTC "star" sequence complex has lost almost 90 of the approximately 110 waters initially present. It is more difficult to remove water from the CAATTC "star" sequence complex. The sequence dependence of water loss correlates with the known sequence dependence of "star" cleavage activity.

  11. Tim-3 enhances FcεRI-proximal signaling to modulate mast cell activation

    PubMed Central

    Phong, Binh L.; Avery, Lyndsay; Sumpter, Tina L.; Gorman, Jacob V.; Watkins, Simon C.; Colgan, John D.

    2015-01-01

    T cell (or transmembrane) immunoglobulin and mucin domain protein 3 (Tim-3) has attracted significant attention as a novel immune checkpoint receptor (ICR) on chronically stimulated, often dysfunctional, T cells. Antibodies to Tim-3 can enhance antiviral and antitumor immune responses. Tim-3 is also constitutively expressed by mast cells, NK cells and specific subsets of macrophages and dendritic cells. There is ample evidence for a positive role for Tim-3 in these latter cell types, which is at odds with the model of Tim-3 as an inhibitory molecule on T cells. At this point, little is known about the molecular mechanisms by which Tim-3 regulates the function of T cells or other cell types. We have focused on defining the effects of Tim-3 ligation on mast cell activation, as these cells constitutively express Tim-3 and are activated through an ITAM-containing receptor for IgE (FcεRI), using signaling pathways analogous to those in T cells. Using a variety of gain- and loss-of-function approaches, we find that Tim-3 acts at a receptor-proximal point to enhance Lyn kinase-dependent signaling pathways that modulate both immediate-phase degranulation and late-phase cytokine production downstream of FcεRI ligation. PMID:26598760

  12. An Interaction Library for the FcεRI Signaling Network.

    PubMed

    Chylek, Lily A; Holowka, David A; Baird, Barbara A; Hlavacek, William S

    2014-01-01

    Antigen receptors play a central role in adaptive immune responses. Although the molecular networks associated with these receptors have been extensively studied, we currently lack a systems-level understanding of how combinations of non-covalent interactions and post-translational modifications are regulated during signaling to impact cellular decision-making. To fill this knowledge gap, it will be necessary to formalize and piece together information about individual molecular mechanisms to form large-scale computational models of signaling networks. To this end, we have developed an interaction library for signaling by the high-affinity IgE receptor, FcεRI. The library consists of executable rules for protein-protein and protein-lipid interactions. This library extends earlier models for FcεRI signaling and introduces new interactions that have not previously been considered in a model. Thus, this interaction library is a toolkit with which existing models can be expanded and from which new models can be built. As an example, we present models of branching pathways from the adaptor protein Lat, which influence production of the phospholipid PIP3 at the plasma membrane and the soluble second messenger IP3. We find that inclusion of a positive feedback loop gives rise to a bistable switch, which may ensure robust responses to stimulation above a threshold level. In addition, the library is visualized to facilitate understanding of network circuitry and identification of network motifs.

  13. Insights into copper coordination in the EcoRI-DNA complex by ESR spectroscopy

    NASA Astrophysics Data System (ADS)

    Ji, Ming; Tan, Likun; Jen-Jacobson, Linda; Saxena, Sunil

    2014-12-01

    The EcoRI restriction endonuclease requires one divalent metal ion in each of two symmetrical and identical catalytic sites to catalyse double-strand DNA cleavage. Recently, we showed that Cu2+ binds outside the catalytic sites to a pair of new sites at H114 in each sub-unit, and inhibits Mg2+-catalysed DNA cleavage. In order to provide more detailed structural information on this new metal ion binding site, we performed W-band (∼94 GHz) and X-band (∼9.5 GHz) electron spin resonance spectroscopic measurements on the EcoRI-DNA-(Cu2+)2 complex. Cu2+ binding results in two distinct components with different gzz and Azz values. X-band electron spin echo envelope modulation results indicate that both components arise from a Cu2+ coordinated to histidine. This observation is further confirmed by the hyperfine sub-level correlation results. W-band electron nuclear double resonance spectra provide evidence for equatorial coordination of water molecules to the Cu2+ ions.

  14. PERI-CC2: A Polarizable Embedded RI-CC2 Method.

    PubMed

    Schwabe, Tobias; Sneskov, Kristian; Haugaard Olsen, Jógvan Magnus; Kongsted, Jacob; Christiansen, Ove; Hättig, Christof

    2012-09-11

    We present a combination of the polarizable embedding (PE) method with the resolution-of-the-identity implementation of the approximate coupled-cluster singles and doubles method CC2. The new approach, termed PERI-CC2, allows one to study excited state phenomena of large solvated molecular systems with an accurate correlated wave function method. Central to the PE approach is the advanced description of the environmental electrostatic potential and inclusion of polarization, and the quintessence of RI-CC2 is efficient access to excited state properties while retaining the accuracy associated with CC theory. To maintain efficiency, an approximate truncated CC2 density is introduced to calculate the PE contributions. Explicitly, we derive the central equations and outline an implementation of polarizable embedding for the RI-CC2 approach. The new method is tested against previous PE-CC2 and PE-CCSD results for solvatochromic shifts, demonstrating how the important effects of polarization are incorporated well with PERI-CC2 but with a dramatically reduced overall computational cost. A follow-up investigation of the solvatochromic shift of uracil in aqueous solution further illustrates the potential of PERI-CC2. We discuss the need to explicitly incorporate several water molecules into the region treated by quantum mechanics in order to obtain a reliable and accurate description of the physical effects when specific solute/solvent interactions as, e.g., hydrogen-bonds are involved. PMID:26605734

  15. Legonaridin, a new member of linaridin RiPP from a Ghanaian Streptomyces isolate.

    PubMed

    Rateb, Mostafa E; Zhai, Yin; Ehrner, Emmanuelle; Rath, Christopher M; Wang, Xiaoling; Tabudravu, Jioji; Ebel, Rainer; Bibb, Mervin; Kyeremeh, Kwaku; Dorrestein, Pieter C; Hong, Kui; Jaspars, Marcel; Deng, Hai

    2015-10-01

    Linaridins are rare linear ribosomally-synthesized and post-translationally modified peptides (RiPPs) and only two, cypemycin and SGR-1832, in this family have been identified so far. Legonaridin 1 has been discovered as a new member of linaridins through chemical isolation, peptidogenomics, comprehensive 1- and 2-D NMR and advanced Marfey's analyses from the soil bacterium Streptomyces sp. CT34, an isolate collected from Legon, Ghana. Bioinformatics analysis of the gene cluster suggested that the biosynthesis of legonaridin 1 is different from those of cypemycin and SGR-1832. Consistent with bioinformatics and peptidogenomics analyses, 1 has a total of nine post-modifications, 8 dehydrobutyrine residues and a N,N-dimethylated N-terminus with a carboxylic acid at the C-terminus. Legonaridin 1 is structurally different from the two known linaridins comprising a new subfamily. This is the first time that NMR spectroscopy is used to establish the 2-D structure of a linaridin RiPP.

  16. High-resolution abundance analysis of very metal-poor r-I stars

    NASA Astrophysics Data System (ADS)

    Siqueira Mello, C.; Hill, V.; Barbuy, B.; Spite, M.; Spite, F.; Beers, T. C.; Caffau, E.; Bonifacio, P.; Cayrel, R.; François, P.; Schatz, H.; Wanajo, S.

    2014-05-01

    Context. Moderately r-process-enriched stars (r-I; +0.3 ≤ [Eu/Fe] ≤ +1.0) are at least four times as common as those that are greatly enriched in r-process elements (r-II; [Eu/Fe] > +1.0), and the abundances in their atmospheres are important tools for obtaining a better understanding of the nucleosynthesis processes responsible for the origin of the elements beyond the iron peak. Aims: The main aim of this work is to derive abundances for a sample of seven metal-poor stars with -3.4 ≤ [Fe/H] ≤ -2.4 classified as r-I stars, to understand the role of these stars for constraining the astrophysical nucleosynthesis event(s) that is (are) responsible for the production of the r-process, and to investigate whether they differ, in any significant way, from the r-II stars. Methods: We carried out a detailed abundance analysis based on high-resolution spectra obtained with the VLT/UVES spectrograph, using spectra in the wavelength ranges 3400-4500 Å, 6800-8200 Å, and 8700-10 000 Å, with resolving power R ~ 40 000 (blue arm) and R ~ 55 000 (red arm). The OSMARCS LTE 1D model atmosphere grid was employed, along with the spectrum synthesis code Turbospectrum. Results: We have derived abundances of the light elements Li, C, and N, the α-elements Mg, Si, S, Ca, and Ti, the odd-Z elements Al, K, and Sc, the iron-peak elements V, Cr, Mn, Fe, Co, and Ni, and the trans-iron elements from the first peak (Sr, Y, Zr, Mo, Ru, and Pd), the second peak (Ba, La, Ce, Pr, Nd, Sm, Eu, Gd, Tb, Dy, Ho, Er, Tm, and Yb), the third peak (Os and Ir, as upper limits), and the actinides (Th) regions. The results are compared with values for these elements for r-II and "normal" very and extremely metal-poor stars reported in the literature, ages based on radioactive chronometry are explored using different models, and a number of conclusions about the r-process and the r-I stars are presented. Hydrodynamical models were used for some elements, and general behaviors for the 3D corrections

  17. External Beam Therapy (EBT)

    MedlinePlus

    ... Physician Resources Professions Site Index A-Z External Beam Therapy (EBT) External beam therapy (EBT) is a ... follow-up should I expect? What is external beam therapy and how is it used? External beam ...

  18. CEBAF beam loss accounting

    SciTech Connect

    Ursic, R.; Mahoney, K.; Hovater, C.; Hutton, A.; Sinclair, C.

    1995-12-31

    This paper describes the design and implementation of a beam loss accounting system for the CEBAF electron accelerator. This system samples the beam curent throughout the beam path and measures the beam current accurately. Personnel Safety and Machine Protection systems use this system to turn off the beam when hazardous beam losses occur.

  19. Assembly of the central domain of the 30S ribosomal subunit: roles for the primary binding ribosomal proteins S15 and S8.

    PubMed

    Jagannathan, Indu; Culver, Gloria M

    2003-07-01

    Assembly of the 30S ribosomal subunit occurs in a highly ordered and sequential manner. The ordered addition of ribosomal proteins to the growing ribonucleoprotein particle is initiated by the association of primary binding proteins. These proteins bind specifically and independently to 16S ribosomal RNA (rRNA). Two primary binding proteins, S8 and S15, interact exclusively with the central domain of 16S rRNA. Binding of S15 to the central domain results in a conformational change in the RNA and is followed by the ordered assembly of the S6/S18 dimer, S11 and finally S21 to form the platform of the 30S subunit. In contrast, S8 is not part of this major platform assembly branch. Of the remaining central domain binding proteins, only S21 association is slightly dependent on S8. Thus, although S8 is a primary binding protein that extensively contacts the central domain, its role in assembly of this domain remains unclear. Here, we used directed hydroxyl radical probing from four unique positions on S15 to assess organization of the central domain of 16S rRNA as a consequence of S8 association. Hydroxyl radical probing of Fe(II)-S15/16S rRNA and Fe(II)-S15/S8/16S rRNA ribonucleoprotein particles reveal changes in the 16S rRNA environment of S15 upon addition of S8. These changes occur predominantly in helices 24 and 26 near previously identified S8 binding sites. These S8-dependent conformational changes are consistent with 16S rRNA folding in complete 30S subunits. Thus, while S8 binding is not absolutely required for assembly of the platform, it appears to affect significantly the 16S rRNA environment of S15 by influencing central domain organization.

  20. KEY COMPARISON: APMP/TCRI key comparison report of measurement of air kerma for medium-energy x-rays (APMP.RI(I)-K3)

    NASA Astrophysics Data System (ADS)

    Lee, J. H.; Hwang, W. S.; Kotler, L. H.; Webb, D. V.; Büermann, L.; Burns, D. T.; Takeyeddin, M.; Shaha, V. V.; Srimanoroth, S.; Meghzifene, A.; Hah, S. H.; Chun, K. J.; Kadni, T. B.; Takata, N.; Msimang, Z.

    2008-01-01

    The APMP/TCRI Dosimetry Working Group performed the APMP.RI(I)-K3 key comparison of measurement of air kerma for medium-energy x-rays (100 kV to 250 kV) between 2000 and 2003. In total, 11 institutes took part in the comparison, among which 8 were APMP member laboratories. Two commercial cavity ionization chambers were used as transfer instruments and circulated among the participants. All the participants established the 100 kV, 135 kV, 180 kV and 250 kV x-ray beam qualities equivalent to those of the BIPM. The results showed that the maximum difference between the participants and the BIPM in the medium-energy x ray range, evaluated using the comparison data of the linking laboratories ARPANSA and PTB, is less than 1.4%. The degrees of equivalence between the participants are presented and this comparison confirms the calibration capabilities of the participating laboratories. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI Section I, according to the provisions of the CIPM Mutual Recognition Arrangement (MRA).

  1. Development of new auxiliary basis functions of the Karlsruhe segmented contracted basis sets including diffuse basis functions (def2-SVPD, def2-TZVPPD, and def2-QVPPD) for RI-MP2 and RI-CC calculations.

    PubMed

    Hellweg, Arnim; Rappoport, Dmitrij

    2015-01-14

    We report optimized auxiliary basis sets for use with the Karlsruhe segmented contracted basis sets including moderately diffuse basis functions (Rappoport and Furche, J. Chem. Phys., 2010, 133, 134105) in resolution-of-the-identity (RI) post-self-consistent field (post-SCF) computations for the elements H-Rn (except lanthanides). The errors of the RI approximation using optimized auxiliary basis sets are analyzed on a comprehensive test set of molecules containing the most common oxidation states of each element and do not exceed those of the corresponding unaugmented basis sets. During these studies an unsatisfying performance of the def2-SVP and def2-QZVPP auxiliary basis sets for Barium was found and improved sets are provided. We establish the versatility of the def2-SVPD, def2-TZVPPD, and def2-QZVPPD basis sets for RI-MP2 and RI-CC (coupled-cluster) energy and property calculations. The influence of diffuse basis functions on correlation energy, basis set superposition error, atomic electron affinity, dipole moments, and computational timings is evaluated at different levels of theory using benchmark sets and showcase examples.

  2. 76 FR 18812 - Submission for Review: We Need the Social Security Number of the Person Named Below, RI 38-45

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-05

    ... MANAGEMENT Submission for Review: We Need the Social Security Number of the Person Named Below, RI 38-45... the Social Security Number of the Person Named Below, RI 38-45. As required by the Paperwork Reduction... published in the Federal Register on October 6, 2010 at Volume 75 FR 61783 allowing for a 60-day...

  3. Efficient linear-scaling second-order Møller-Plesset perturbation theory: The divide-expand-consolidate RI-MP2 model.

    PubMed

    Baudin, Pablo; Ettenhuber, Patrick; Reine, Simen; Kristensen, Kasper; Kjærgaard, Thomas

    2016-02-01

    The Resolution of the Identity second-order Møller-Plesset perturbation theory (RI-MP2) method is implemented within the linear-scaling Divide-Expand-Consolidate (DEC) framework. In a DEC calculation, the full molecular correlated calculation is replaced by a set of independent fragment calculations each using a subset of the total orbital space. The number of independent fragment calculations scales linearly with the system size, rendering the method linear-scaling and massively parallel. The DEC-RI-MP2 method can be viewed as an approximation to the DEC-MP2 method where the RI approximation is utilized in each fragment calculation. The individual fragment calculations scale with the fifth power of the fragment size for both methods. However, the DEC-RI-MP2 method has a reduced prefactor compared to DEC-MP2 and is well-suited for implementation on massively parallel supercomputers, as demonstrated by test calculations on a set of medium-sized molecules. The DEC error control ensures that the standard RI-MP2 energy can be obtained to the predefined precision. The errors associated with the RI and DEC approximations are compared, and it is shown that the DEC-RI-MP2 method can be applied to systems far beyond the ones that can be treated with a conventional RI-MP2 implementation. PMID:26851903

  4. Efficient linear-scaling second-order Møller-Plesset perturbation theory: The divide-expand-consolidate RI-MP2 model.

    PubMed

    Baudin, Pablo; Ettenhuber, Patrick; Reine, Simen; Kristensen, Kasper; Kjærgaard, Thomas

    2016-02-01

    The Resolution of the Identity second-order Møller-Plesset perturbation theory (RI-MP2) method is implemented within the linear-scaling Divide-Expand-Consolidate (DEC) framework. In a DEC calculation, the full molecular correlated calculation is replaced by a set of independent fragment calculations each using a subset of the total orbital space. The number of independent fragment calculations scales linearly with the system size, rendering the method linear-scaling and massively parallel. The DEC-RI-MP2 method can be viewed as an approximation to the DEC-MP2 method where the RI approximation is utilized in each fragment calculation. The individual fragment calculations scale with the fifth power of the fragment size for both methods. However, the DEC-RI-MP2 method has a reduced prefactor compared to DEC-MP2 and is well-suited for implementation on massively parallel supercomputers, as demonstrated by test calculations on a set of medium-sized molecules. The DEC error control ensures that the standard RI-MP2 energy can be obtained to the predefined precision. The errors associated with the RI and DEC approximations are compared, and it is shown that the DEC-RI-MP2 method can be applied to systems far beyond the ones that can be treated with a conventional RI-MP2 implementation.

  5. Functional expression of the high affinity receptor for IgE (FcepsilonRI) in human platelets and its' intracellular expression in human megakaryocytes.

    PubMed

    Hasegawa, S; Pawankar, R; Suzuki, K; Nakahata, T; Furukawa, S; Okumura, K; Ra, C

    1999-04-15

    The high affinity IgE receptor (FcepsilonRI) expressed on the cell surface of mast cells and basophils is the key molecule in triggering the IgE-mediated allergic reaction. Recently, it was elucidated that the FcepsilonRI is expressed on a variety of other cells like Langerhans cells, monocytes, and eosinophils, and the functional importance of the FcepsilonRI expression in Langerhans cells was also shown. Some studies suggest that human platelets may play important roles in allergic inflammation through the cell-surface expression of the FcepsilonRII and FcgammaRII. Here, we report that human platelets and megakaryocytes constitutively express the messenger RNA and protein for the FcepsilonRI. Although the FcepsilonRI is expressed on the cell surface of human platelets, it is only detected in the cytoplasm of human megakaryocytes. We also confirmed that human platelets express the genes for the alpha, beta, and gamma chains of the FcepsilonRI without any defined mutations. Furthermore, stimulation of human platelets via the FcepsilonRI induced the release of serotonin and RANTES (Regulated on Activation, Normal T Expressed, and presumably Secreted). Taken together, these results suggest a novel and important role for human platelets in perpetuating allergic inflammation through the expression of and activation via the FcepsilonRI.

  6. Efficient linear-scaling second-order Møller-Plesset perturbation theory: The divide-expand-consolidate RI-MP2 model

    NASA Astrophysics Data System (ADS)

    Baudin, Pablo; Ettenhuber, Patrick; Reine, Simen; Kristensen, Kasper; Kjærgaard, Thomas

    2016-02-01

    The Resolution of the Identity second-order Møller-Plesset perturbation theory (RI-MP2) method is implemented within the linear-scaling Divide-Expand-Consolidate (DEC) framework. In a DEC calculation, the full molecular correlated calculation is replaced by a set of independent fragment calculations each using a subset of the total orbital space. The number of independent fragment calculations scales linearly with the system size, rendering the method linear-scaling and massively parallel. The DEC-RI-MP2 method can be viewed as an approximation to the DEC-MP2 method where the RI approximation is utilized in each fragment calculation. The individual fragment calculations scale with the fifth power of the fragment size for both methods. However, the DEC-RI-MP2 method has a reduced prefactor compared to DEC-MP2 and is well-suited for implementation on massively parallel supercomputers, as demonstrated by test calculations on a set of medium-sized molecules. The DEC error control ensures that the standard RI-MP2 energy can be obtained to the predefined precision. The errors associated with the RI and DEC approximations are compared, and it is shown that the DEC-RI-MP2 method can be applied to systems far beyond the ones that can be treated with a conventional RI-MP2 implementation.

  7. IRFM temperature calibrations for the Vilnius, Geneva, RI(C) and DDO photometric systems

    NASA Astrophysics Data System (ADS)

    Meléndez, J.; Ramírez, I.

    2003-02-01

    We have used the infrared flux method (IRFM) temperatures of a large sample of late type dwarfs given by Alonso et al. (\\cite{alonso:irfm}) to calibrate empirically the relations Teff=f (colour, [Fe/H]) for the Vilnius, Geneva, RI(C) (Cousins) and DDO photometric systems. The resulting temperature scale and intrinsic colour-colour diagrams for these systems are also obtained. From this scale, the solar colours are derived and compared with those of the solar twin 18 Sco. Since our work is based on the same Teff and [Fe/H] values used by Alonso et al. (\\cite{alonso:escala}) to calibrate other colours, we now have an homogeneous calibration for a large set of photometric systems. Based on data from the GCPD.

  8. Simultaneous Targeting of FcγRs and FcαRI Enhances Tumor Cell Killing.

    PubMed

    Brandsma, Arianne M; Ten Broeke, Toine; Nederend, Maaike; Meulenbroek, Laura A P M; van Tetering, Geert; Meyer, Saskia; Jansen, J H Marco; Beltrán Buitrago, M Alejandra; Nagelkerke, Sietse Q; Németh, István; Ubink, Ruud; Rouwendal, Gerard; Lohse, Stefan; Valerius, Thomas; Leusen, Jeanette H W; Boross, Peter

    2015-12-01

    Efficacy of anticancer monoclonal antibodies (mAb) is limited by the exhaustion of effector mechanisms. IgG mAbs mediate cellular effector functions through FcγRs expressed on effector cells. IgA mAbs can also induce efficient tumor killing both in vitro and in vivo. IgA mAbs recruit FcαRI-expressing effector cells and therefore initiate different effector mechanisms in vivo compared with IgG. Here, we studied killing of tumor cells coexpressing EGFR and HER2 by the IgG mAbs cetuximab and trastuzumab and their IgA variants. In the presence of a heterogeneous population of effector cells (leukocytes), the combination of IgG and IgA mAbs to two different tumor targets (EGFR and HER2) led to enhanced cytotoxicity compared with each isotype alone. Combination of two IgGs or two IgAs or IgG and IgA against the same target did not enhance cytotoxicity. Increased cytotoxicity relied on the presence of both the peripheral blood mononuclear cell and the polymorphonuclear (PMN) fraction. Purified natural killer cells were only cytotoxic with IgG, whereas cytotoxicity induced by PMNs was strong with IgA and poor with IgG. Monocytes, which coexpress FcγRs and FcαRI, also displayed increased cytotoxicity by the combination of IgG and IgA in an overnight killing assay. Coinjection of cetuximab and IgA2-HER2 resulted in increased antitumor effects compared with either mAb alone in a xenograft model with A431-luc2-HER2 cells. Thus, the combination of IgG and IgA isotypes optimally mobilizes cellular effectors for cytotoxicity, representing a promising novel strategy to improve mAb therapy. PMID:26407589

  9. Structural change of E. coli separated and complexed 30S and 50S ribosomal subunits due to Mg 2+ ions: SANS experiments

    NASA Astrophysics Data System (ADS)

    Briganti, G.; Pedone, F.; Giansanti, A.; Giordano, R.

    1995-02-01

    Small-angle neutron-scattering experiments have been performed on E. Coli 70S ribosomes and on 50S and 30S separated subunits in the presence and absence of magnesium ions. In the 70S complex in presence of magnesium, the scattering intensity at Q = 0 ( I(0)) is roughly two times higher than without magnesium, in apparent agreement with the general view of an association-dissociation of the subunits induced by magnesium. But a similar increment is observed in both separated subunits too. The probability distribution functions of the intra-particle distance p( r), obtained by Fourier transforming, the experimental data, indicate that, even at low temperature (5°C) and concentration (0.1 wt%), the 70S and the separated subunits form aggregates. In all samples, the absence of Mg 2+ ions shifts and shrinks p( r) in the single-particle region, below 200 Å, and affects the shape of the curve in the aggregate region. Our results suggest that the presence of Mg 2+ ions does not strongly affect the degree of complexation of the subunits: the 70S complex retains its individuality even in the absence of magnesium, but undergoes structural rearrangements similar to those in 30S and 50S.

  10. Beam geometry selection using sequential beam addition

    SciTech Connect

    Popple, Richard A. Brezovich, Ivan A.; Fiveash, John B.

    2014-05-15

    Purpose: The selection of optimal beam geometry has been of interest since the inception of conformal radiotherapy. The authors report on sequential beam addition, a simple beam geometry selection method, for intensity modulated radiation therapy. Methods: The sequential beam addition algorithm (SBA) requires definition of an objective function (score) and a set of candidate beam geometries (pool). In the first iteration, the optimal score is determined for each beam in the pool and the beam with the best score selected. In the next iteration, the optimal score is calculated for each beam remaining in the pool combined with the beam selected in the first iteration, and the best scoring beam is selected. The process is repeated until the desired number of beams is reached. The authors selected three treatment sites, breast, lung, and brain, and determined beam arrangements for up to 11 beams from a pool comprised of 25 equiangular transverse beams. For the brain, arrangements were additionally selected from a pool of 22 noncoplanar beams. Scores were determined for geometries comprised equiangular transverse beams (EQA), as well as two tangential beams for the breast case. Results: In all cases, SBA resulted in scores superior to EQA. The breast case had the strongest dependence on beam geometry, for which only the 7-beam EQA geometry had a score better than the two tangential beams, whereas all SBA geometries with more than two beams were superior. In the lung case, EQA and SBA scores monotonically improved with increasing number of beams; however, SBA required fewer beams to achieve scores equivalent to EQA. For the brain case, SBA with a coplanar pool was equivalent to EQA, while the noncoplanar pool resulted in slightly better scores; however, the dose-volume histograms demonstrated that the differences were not clinically significant. Conclusions: For situations in which beam geometry has a significant effect on the objective function, SBA can identify

  11. 76 FR 50771 - Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child, 3206-0206

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-16

    ... Volume 76 FR 22938 allowing for a 60-day public comment period. No comments were received for this... MANAGEMENT Submission for Review: RI 25-37, Evidence To Prove Dependency of a Child, 3206-0206 AGENCY: U.S... opportunity to comment on a revised information collection request (ICR) 3206-0206, Evidence to...

  12. Analysis of IgA1 N-glycosylation and its contribution to FcalphaRI binding.

    PubMed

    Gomes, Michelle M; Wall, Stephanie B; Takahashi, Kazuo; Novak, Jan; Renfrow, Matthew B; Herr, Andrew B

    2008-10-28

    The IgA isotype of human antibodies triggers inflammatory responses via the IgA-specific receptor FcalphaRI (CD89). Structural studies have suggested that IgA1 N-glycans could modulate the interaction with FcalphaRI. We have carried out detailed biophysical analyses of three IgA1 samples purified from human serum and recombinant IgA1-Fc and compared their binding to FcalphaRI. Analytical ultracentrifugation revealed wide variation in the distribution of polymeric species between IgA1 samples, and Fourier transform ion cyclotron resonance mass spectrometry showed overlapping but distinct populations of N-glycan species between IgA1 samples. Kinetic and equilibrium data from surface plasmon resonance experiments revealed that variation in the IgA1 C H2 N-glycans had no effect on the kinetics or affinity constants for binding to FcalphaRI. Indeed, complete enzymatic removal of the IgA1 N-glycans yielded superimposable binding curves. These findings have implications for renal diseases such as IgA nephropathy.

  13. The high-affinity receptor for IgG, FcγRI, of humans and non-human primates.

    PubMed

    Chenoweth, Alicia M; Trist, Halina M; Tan, Peck-Szee; Wines, Bruce D; Hogarth, P Mark

    2015-11-01

    Non-human primate (NHP) models, especially involving macaques, are considered important models of human immunity and have been essential in preclinical testing for vaccines and therapeutics. Despite this, much less characterization of macaque Fc receptors has occurred compared to humans or mice. Much of the characterization of macaque Fc receptors so far has focused on the low-affinity Fc receptors, particularly FcγRIIIa. From these studies, it is clear that there are distinct differences between the human and macaque low-affinity receptors and their interaction with human IgG. Relatively little work has been performed on the high-affinity IgG receptor, FcγRI, especially in NHPs. This review will focus on what is currently known of how FcγRI interacts with IgG, from mutation studies and recent crystallographic studies of human FcγRI, and how amino acid sequence differences in the macaque FcγRI may affect this interaction. Additionally, this review will look at the functional consequences of differences in the amino acid sequences between humans and macaques.

  14. 77 FR 71200 - Submission for Review: Initial Certification of Full-Time School Attendance, RI 25-41

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-29

    ... June 4, 2012 at Volume 77 FR 33007 allowing for a 60-day public comment period. No comments were... MANAGEMENT Submission for Review: Initial Certification of Full-Time School Attendance, RI 25-41 AGENCY: U.S... Full-Time School Attendance. As required by the Paperwork Reduction Act of 1995, (Pub. L. 104-13, 44...

  15. Narratives of Agency: The Experiences of Braille Literacy Practitioners in the "Kha Ri Gude" South African Mass Literacy Campaign

    ERIC Educational Resources Information Center

    McKay, Veronica I.; Romm, Norma R. A.

    2015-01-01

    In this article, we locate the "Kha Ri Gude" South African Mass Literacy Campaign within the context of the problem of illiteracy and exclusion in South Africa, while concentrating on various post-apartheid initiatives designed to give visually challenged adults the opportunity to become literate. We shall provide a detailed account of…

  16. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 33 Navigation and Navigable Waters 1 2012-07-01 2012-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  17. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 33 Navigation and Navigable Waters 1 2010-07-01 2010-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  18. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 33 Navigation and Navigable Waters 1 2011-07-01 2011-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  19. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 33 Navigation and Navigable Waters 1 2013-07-01 2013-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  20. 33 CFR 110.48 - Thompson Cove on east side of Pawcatuck River below Westerly, R.I.

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 33 Navigation and Navigable Waters 1 2014-07-01 2014-07-01 false Thompson Cove on east side of Pawcatuck River below Westerly, R.I. 110.48 Section 110.48 Navigation and Navigable Waters COAST GUARD, DEPARTMENT OF HOMELAND SECURITY ANCHORAGES ANCHORAGE REGULATIONS Special Anchorage Areas § 110.48 Thompson Cove on east side of Pawcatuck River...

  1. VizieR Online Data Catalog: LDN 1570 BV(RI)c polarisation and photometry (Eswaraiah+, 2013)

    NASA Astrophysics Data System (ADS)

    Eswaraiah, C.; Maheswar, G.; Pandey, A. K.; Jose, J.; Ramaprakash, A. N.; Bhatt, H. C.

    2013-05-01

    Polarimetric observations of the field containing L1570 were carried out on ten nights; namely, 23, 24, 25, 26 November 2009; 23, 24, 27, 28 December 2009 and 27, 31 December 2010 using the ARIES Imaging Polarimeter (AIMPOL) mounted at the Cassegrain focus of the 1.04-m Sampurnanand telescope (ST) of the Aryabhatta Research Institute of Observational sciences (ARIES), Manora Peak, India. The CCD optical photometric observations of the central region (RA=06:07:33.043; DE=+19:30:52.70, 2000) of L1570 were carried out in BVRI-bands using the 1.04-m ST on 27 November 2010. Results based on optical broad-band (BV(RI)c) photometric and polarimetric observations are presented. The polarization results of various polarized standard stars (taken from Schmidt et al. 1992AJ....104.1563S) are presented along with their standard values (Table 1). Rc-band polarization data of 127 stars along with their 2MASS data (JHKs) is presented (Table 2). Polarization and Serkowski fit parameters for the 42 stars with V(RI)c pass-band data is presented (Table 3). Polarization and Serkowski fit parameters for the 15 stars with BV(RI)c pass-band data is presented (Table 4). Photometric data of 144 stars with good signal-noise-ratio (with BV(RI)c and 2MASS JHKs-photometric errors <0.1mag) is also presented (Table 6). (6 data files).

  2. Analysis of IgA1 N-glycosylation and its contribution to FcαRI binding†

    PubMed Central

    Gomes, Michelle M.; Wall, Stephanie B.; Takahashi, Kazuo; Novak, Jan; Renfrow, Matthew B.; Herr, Andrew B.

    2008-01-01

    The IgA isotype of human antibodies triggers inflammatory responses via the IgA-specific receptor FcαRI (CD89). Structural studies have suggested that IgA1 N-glycans could modulate the interaction with FcαRI. We have carried out detailed biophysical analyses of three IgA1 samples purified from human serum and recombinant IgA1-Fc and compared their binding to FcαRI. Analytical ultracentrifugation revealed wide variation in the distribution of polymeric species between IgA1 samples, and Fourier transform ion cyclotron resonance mass spectrometry showed overlapping but distinct populations of N-glycan species between IgA1 samples. Kinetic and equilibrium data from surface plasmon resonance experiments revealed that variation in the IgA1 CH2 N-glycans had no effect on the kinetics or affinity constants for binding to FcαRI. Indeed, complete enzymatic removal of the IgA1 N-glycans yielded superimposable binding curves. These findings have implications for renal diseases such as IgA nephropathy. PMID:18826328

  3. Beam-Bem interactions

    SciTech Connect

    Kim, Hyung Jin; /Fermilab

    2011-12-01

    In high energy storage-ring colliders, the nonlinear effect arising from beam-beam interactions is a major source that leads to the emittance growth, the reduction of beam life time, and limits the collider luminosity. In this paper, two models of beam-beam interactions are introduced, which are weak-strong and strong-strong beam-beam interactions. In addition, space-charge model is introduced.

  4. Structure of FcγRI in complex with Fc reveals the importance of glycan recognition for high-affinity IgG binding.

    PubMed

    Lu, Jinghua; Chu, Jonathan; Zou, Zhongcheng; Hamacher, Nels B; Rixon, Mark W; Sun, Peter D

    2015-01-20

    Fc gamma receptor I (FcγRI) contributes to protective immunity against bacterial infections, but exacerbates certain autoimmune diseases. The sole high-affinity IgG receptor, FcγRI plays a significant role in immunotherapy. To elucidate the molecular mechanism of its high-affinity IgG binding, we determined the crystal structure of the extracellular domains of human FcγRI in complex with the Fc domain of human IgG1. FcγRI binds to the Fc in a similar mode as the low-affinity FcγRII and FcγRIII receptors. In addition to many conserved contacts, FcγRI forms additional hydrogen bonds and salt bridges with the lower hinge region of Fc. Unique to the high-affinity receptor-Fc complex, however, is the conformation of the receptor D2 domain FG loop, which enables a charged KHR motif to interact with proximal carbohydrate units of the Fc glycans. Both the length and the charge of the FcγRI FG loop are well conserved among mammalian species. Ala and Glu mutations of the FG loop KHR residues showed significant contributions of His-174 and Arg-175 to antibody binding, and the loss of the FG loop-glycan interaction resulted in an ∼ 20- to 30-fold decrease in FcγRI affinity to all three subclasses of IgGs. Furthermore, deglycosylation of IgG1 resulted in a 40-fold loss in FcγRI binding, demonstrating involvement of the receptor FG loop in glycan recognition. These results highlight a unique glycan recognition in FcγRI function and open potential therapeutic avenues based on antibody glycan engineering or small molecular glycan mimics to target FcγRI for certain autoimmune diseases.

  5. Evaluation of e-beam repair for nanoimprint templates

    NASA Astrophysics Data System (ADS)

    Pritschow, Marcus; Boegli, Volker; Butschke, Joerg; Irmscher, Mathias; Resnick, Douglas; Sailer, Holger; Selinidis, Kosta; Thompson, Ecron

    2008-10-01

    Two essential process steps of the template fabrication chain are inspection and repair. The widely introduced gas assisted e-beam etching and deposition technique for mask repair offers crucial advantages, especially regarding the resolution capability. We started the evaluation of a new e-beam repair test stand based on the Zeiss MeRiT technology for UV-NIL template repair. For this purpose, templates with programmed defects of different shapes and sizes have been designed and fabricated. The repair experiments were focused on the development of recipes for quartz etching and deposition specifically tailored for NIL repair requirements Both, clear and opaque programmed defects have been repaired and the results have been analyzed. After recipe optimization, templates with repaired programmed defects have been imprinted on a Molecular Imprints Imprio 250 tool. By comparing template and imprint results we investigated the repair capability.

  6. Long range surface plasmon resonance with ultra-high penetration depth for self-referenced sensing and ultra-low detection limit using diverging beam approach

    SciTech Connect

    Isaacs, Sivan Abdulhalim, Ibrahim

    2015-05-11

    Using an insulator-metal-insulator structure with dielectric having refractive index (RI) larger than the analyte, long range surface plasmon (SP) resonance exhibiting ultra-high penetration depth is demonstrated for sensing applications of large bioentities at wavelengths in the visible range. Based on the diverging beam approach in Kretschmann-Raether configuration, one of the SP resonances is shown to shift in response to changes in the analyte RI while the other is fixed; thus, it can be used as a built in reference. The combination of the high sensitivity, high penetration depth and self-reference using the diverging beam approach in which a dark line is detected of the high sensitivity, high penetration depth, self-reference, and the diverging beam approach in which a dark line is detected using large number of camera pixels with a smart algorithm for sub-pixel resolution, a sensor with ultra-low detection limit is demonstrated suitable for large bioentities.

  7. Kinetics of the appearance of Fc epsilon RI-bearing cells in interleukin-3-dependent mouse bone marrow cultures: correlation with histamine content and mast cell maturation.

    PubMed

    Rottem, M; Barbieri, S; Kinet, J P; Metcalfe, D D

    1992-02-15

    While it is known that mast cells arise from pluripotential hematopoietic cells and express their mature phenotypes in tissues, the sequence of events in maturation is incompletely understood. To study early mast cells, we sorted cells from interleukin-3 (IL-3)-dependent mouse bone marrow cultures on the basis of Fc epsilon RI and examined their morphology, histamine content, and growth characteristics. Flow cytometric analysis and sort showed that the Fc epsilon RI-bearing (Fc epsilon RI+) cells increased from 0% on day 0 to 90% by day 21 and that the total number of Fc epsilon RI+ cells increased from 0 at the start of culture to 3.75 x 10(5) cells by day 21 from an initial population of 1 x 10(5) cells. The dissociation rate of 125I-labeled IgE from early cultured cells resembled the dissociation rate of mouse IgE from mature murine mast cells. Mean fluorescence intensity increased over time, reflecting an increase in IgE receptor density. Fc epsilon RI+ cells were also positive for Fc gamma RII/III. Morphologic studies showed gradual acquisition of metachromatic granules in the Fc epsilon RI+ cells, which was paralleled by an increase in histamine content. Sorted Fc epsilon RI+ cells, when placed in liquid suspension culture, gave rise to pure mast cell populations. Fc epsilon RI+ cells sorted at day 3 and cultured in agarose with IL-3 gave rise to 4,800 small and 150 medium-size mast cell colony-forming units per 10(6) cells, while Fc epsilon RI- cells gave rise to 23 medium-size and 49 large mast cell colony-forming units per 10(6) cells. Fc epsilon RI+ cells grown in granulocyte-macrophage colony-stimulating factor (CSF) or macrophage-CSF did not give rise to colony-forming units. These results show that Fc epsilon RI+ cells have proliferative potential, but that there also is a population of mast cell progenitor cells that have not yet expressed Fc epsilon RI, and such individual progenitor cells have greater potential for proliferation than cells that

  8. Simple beam profile monitor

    SciTech Connect

    Gelbart, W.; Johnson, R. R.; Abeysekera, B.

    2012-12-19

    An inexpensive beam profile monitor is based on the well proven rotating wire method. The monitor can display beam position and shape in real time for particle beams of most energies and beam currents up to 200{mu}A. Beam shape, position cross-section and other parameters are displayed on a computer screen.

  9. The Tla protein of Porphyromonas gingivalis W50: a homolog of the RI protease precursor (PrpRI) is an outer membrane receptor required for growth on low levels of hemin.

    PubMed Central

    Aduse-Opoku, J; Slaney, J M; Rangarajan, M; Muir, J; Young, K A; Curtis, M A

    1997-01-01

    The prpR1 gene of Porphyromonas gingivalis W50 encodes the polyprotein precursor (PrpRI) of an extracellular arginine-specific protease. PrpRI is organized into four distinct domains (pro, alpha, beta, and gamma) and is processed to a heterodimeric protease (RI) which comprises the alpha and beta components in a noncovalent association. The alpha component contains the protease active site, whereas the beta component appears to have a role in adherence and hemagglutination processes. DNA sequences homologous to the coding region for the RI beta component are present at multiple loci on the P. gingivalis chromosome and may represent a family of related genes. In this report, we describe the cloning, sequence analysis, and characterization of one of these homologous loci isolated in plasmid pJM7. The 6,041-bp P. gingivalis DNA fragment in pJM7 contains a major open reading frame of 3,291 bp with coding potential for a protein with an Mr 118,700. An internal region of the deduced sequence (V304 to N768) shows 98% identity to the beta domain of PrpRI, and the recombinant product of pJM7 is immunoreactive with an antibody specific to the RI beta component. The N terminus of the deduced sequence has regional similarity to TonB-linked receptors which are frequently involved in periplasmic translocation of hemin, iron, colicins, or vitamin B12 in other bacteria. We have therefore designated this gene tla (TonB-linked adhesin). In contrast to the parent strain, an isogenic mutant of P. gingivalis W50 in which the tla was insertionally inactivated was unable to grow in medium containing low concentrations of hemin (<2.5 mg liter(-1)), and hemin-depleted cells of this mutant failed to respond to hemin in an agar diffusion plate assay. These data suggest a role for this gene product in hemin acquisition and utilization. Furthermore, the mutant produced significantly less arginine- and lysine-specific protease activities than the parent strain, indicating that there may be a

  10. Structural change induced by removal of magnesium ions on E. coli 70S ribosomes and 30S and 50S separated subunits

    NASA Astrophysics Data System (ADS)

    Briganti, G.; Giansanti, A.; Bonincontro, A.; Mengoni, M.; Giordano, R.

    1996-09-01

    To clarify the intra- and inter-particle effects of magnesium ions on E. coli ribosomes we have performed measurements of light scattering intensity, index of refraction and small-angle neutron scattering on the 70S complex and 30S and 50S subunits with and without magnesium. The results indicate that magnesium has a specific intra-particle effect on the subunits as well as on the 70S complex. Besides, the distance distribution function shows that magnesium has an effect on the supra-ribosomal aggregation. The combination of these intra- and inter-particle effects completely hides, in the scattering experiments, any effect of magnesium on the degree of association of the two subunits into the 70S complex.

  11. A Woman in Her 30s With a Past History of HIV Disease Presented With Recurrent Fever, Night Sweats, and Small Bilateral Pulmonary Nodules.

    PubMed

    Hashmi, Hafiz Rizwan Talib; Niazi, Masooma; Adrish, Muhammad

    2016-06-01

    A woman in her 30s presented with recurrent low-grade fever and cough (onset, 1 week). She reported occasional night sweats and weight loss of approximately 20 pounds over the past 4 months. She denied nausea, vomiting, diarrhea, or any urinary complaints. Her past medical history was significant for chronic hepatitis C and HIV infection, the latter diagnosed in 2001. She was noncompliant with highly active antiretroviral therapy for more than 4 years and had pneumocystis pneumonia 2 years prior to this presentation. She had a 10-pack per year smoking history and reported active use of cocaine and heroin. The patient denied any occupational exposures. PMID:27287594

  12. New RNA-protein crosslinks in domains 1 and 2 of E. coli 30S ribosomal subunits obtained by means of an intrinsic photoaffinity probe.

    PubMed Central

    Hajnsdorf, E; Favre, A; Expert-Bezançon, A

    1989-01-01

    Functionally active 70S ribosomes containing 4-thiouridine (s4U) in place of uridine were prepared by a formerly described in vivo substitution method. Proteins were crosslinked to RNA by 366 nm photoactivation of s4U. We observe the systematic and characteristic formation of 30S dimers; they were eliminated for analysis of RNA-protein crosslinks. M13 probes containing rDNA inserts complementary to domains 1 and 2 of 16S RNA from the 5'end up to nucleotide 868 were used to select contiguous or overlapping RNA sections. The proteins covalently crosslinked to each RNA section were identified as S3, S4, S5, S7, S9, S18, S20 and S21. Several crosslinks are compatible with previously published sites for proteins S5, S18, S20 and S21; others for proteins S3, S4, S7, S9, S18 correspond necessarily to new sites. Images PMID:2646595

  13. Mutations of ribosomal protein S5 suppress a defect in late-30S ribosomal subunit biogenesis caused by lack of the RbfA biogenesis factor

    PubMed Central

    Nord, Stefan; Bhatt, Monika J.; Tükenmez, Hasan; Farabaugh, Philip J.; Wikström, P. Mikael

    2015-01-01

    The in vivo assembly of ribosomal subunits requires assistance by maturation proteins that are not part of mature ribosomes. One such protein, RbfA, associates with the 30S ribosomal subunits. Loss of RbfA causes cold sensitivity and defects of the 30S subunit biogenesis and its overexpression partially suppresses the dominant cold sensitivity caused by a C23U mutation in the central pseudoknot of 16S rRNA, a structure essential for ribosome function. We have isolated suppressor mutations that restore partially the growth of an RbfA-lacking strain. Most of the strongest suppressor mutations alter one out of three distinct positions in the carboxy-terminal domain of ribosomal protein S5 (S5) in direct contact with helix 1 and helix 2 of the central pseudoknot. Their effect is to increase the translational capacity of the RbfA-lacking strain as evidenced by an increase in polysomes in the suppressed strains. Overexpression of RimP, a protein factor that along with RbfA regulates formation of the ribosome's central pseudoknot, was lethal to the RbfA-lacking strain but not to a wild-type strain and this lethality was suppressed by the alterations in S5. The S5 mutants alter translational fidelity but these changes do not explain consistently their effect on the RbfA-lacking strain. Our genetic results support a role for the region of S5 modified in the suppressors in the formation of the central pseudoknot in 16S rRNA. PMID:26089326

  14. Pattern of 4-thiouridine-induced cross-linking in 16S ribosomal RNA in the Escherichia coli 30S subunit.

    PubMed

    Nanda, Kavita; Wollenzien, Paul

    2004-07-20

    The locations of RNA-RNA cross-links in 16S rRNA were determined after in vivo incorporation of 4-thiouridine (s(4)U) into RNA in a strain of Escherichia coli deficient in pyrimidine synthesis and irradiation at >320 nm. This was done as an effort to find RNA cross-links different from UVB-induced cross-links that would be valuable for monitoring the 30S subunit in functional complexes. Cross-linked 16S rRNA was separated on the basis of loop size, and cross-linking sites were identified by reverse transcription, RNase H cleavage, and RNA sequencing. A limited number of RNA-RNA cross-links in nine regions were observed. In five regions-s(4)U562 x C879-U884, s(4)U793 x A1519, s(4)U1189 x U1060-G1064, s(4)U1183 x A1092, and s(4)U991 x C1210-U1212-the s(4)U-induced cross-links are similar to UVB-induced cross-links observed previously. In four other regions-s(4)U960 x A1225, s(4)U820 x G570, s(4)U367 x A55-U56, and s(4)U239 x A120-the s(4)U-induced cross-links are different from UVB-induced cross-links. The pattern of cross-linking is not limited by the distribution of s(4)U, because there are at least 112 s(4)U substitution sites in the 16S rRNA. The relatively small number of s(4)U-mediated cross-links is probably determined by the organization of the RNA in the 30S subunit, which allows RNA conformational flexibility needed for cross-link formation in just a limited region.

  15. Europlanet-RI: Access to Planetary Data, Tools, Models and Support Information

    NASA Astrophysics Data System (ADS)

    Schmidt, W.; Capria, M. T.; Chanteur, G.

    2012-04-01

    information is collected in the data access system of IDIS. By the end of the project in 2012 data from most planetary missions can be accessed, combined and correlated with spectral data bases for atmospheric gases and solids, laboratory measurements related to space observations and the results of model runs simulating the observations of different parameters around and at planets under various boundary conditions. The VO-structure will allow the access to these data through graphical interfaces including optimized visualization tools or alternatively through a command interface for further integration into other applications. Reference: [1] Details to IDIS and the Europlanet-RI via Web-site: http://www.idis.europlanet-ri.eu/ [2] Demonstrator implementation for Plasma-VO AMDA: http://cdpp-amda.cesr.fr/DDHTML/index.html [3] Demonstrator implementation for the IDIS-VO: http://www.idis-dyn.europlanet-ri.eu/vodev.shtml

  16. Hippocampal distribution of IL-1β and IL-1RI following lithium-pilocarpine-induced status epilepticus in the developing rat.

    PubMed

    Álvarez-Croda, Dulce-Mariely; Santiago-García, Juan; Medel-Matus, Jesús S; Martínez-Quiroz, Joel; Puig-Lagunes, Angel A; Beltrán-Parrazal, Luis; López-Meraz, María-Leonor

    2016-01-01

    The contribution of Interleukin-1β (IL-1β) to neuronal injury induced by status epilepticus (SE) in the immature brain remains unclear. The goal of this study was to determine the hippocampal expression of IL-1β and its type 1 receptor (IL-1RI) following SE induced by the lithium-pilocarpine model in fourteen-days-old rat pups; control animals were given an equal volume of saline instead of the convulsant. IL-1β and IL-1RI mRNA hippocampal levels were assessed by qRT-PCR 6 and 24 h after SE or control conditions. IL-1β and IL-1RI expression was detected in the dorsal hippocampus by immunohistochemical procedures; Fluoro-Jade B staining was carried out in parallel sections in order to detect neuronal cell death. IL-1β mRNA expression was increased 6 h following SE, but not at 24 h; however IL-1RI mRNA expression was unaffected when comparing with the control group. IL-1β and IL-1RI immunoreactivity was not detected in control animals. IL-1β and IL-1RI were expressed in the CA1 pyramidal layer, the dentate gyrus granular layer and the hilus 6 h after SE, whereas injured cells were detected 24 h following seizures. Early expression of IL-1β and IL-1RI in the hippocampus could be associated with SE-induced neuronal cell death mechanisms in the developing rat. PMID:27168372

  17. Laser beam monitoring system

    DOEpatents

    Weil, Bradley S.; Wetherington, Jr., Grady R.

    1985-01-01

    Laser beam monitoring systems include laser-transparent plates set at an angle to the laser beam passing therethrough and light sensor for detecting light reflected from an object on which the laser beam impinges.

  18. Relativistic electron beam generator

    DOEpatents

    Mooney, L.J.; Hyatt, H.M.

    1975-11-11

    A relativistic electron beam generator for laser media excitation is described. The device employs a diode type relativistic electron beam source having a cathode shape which provides a rectangular output beam with uniform current density.

  19. Beam imaging sensor

    DOEpatents

    McAninch, Michael D.; Root, Jeffrey J.

    2016-07-05

    The present invention relates generally to the field of sensors for beam imaging and, in particular, to a new and useful beam imaging sensor for use in determining, for example, the power density distribution of a beam including, but not limited to, an electron beam or an ion beam. In one embodiment, the beam imaging sensor of the present invention comprises, among other items, a circumferential slit that is either circular, elliptical or polygonal in nature.

  20. NK Muon Beam

    SciTech Connect

    Koizumi, G.

    1988-09-28

    The NK Muon Beam will be a modified version of the existing NT beam line. The decision to employ a modified version of the NT beam line was made based on considerations of cost and availability of the beam line. Preliminary studies considered use of other beam lines, e.g., the NW beam line, and even of moving the bubble chamber with its superconducting coils but were rejected for reasons such as cost, personnel limitations, and potential conflicts with other users.

  1. Tunable beam displacer

    SciTech Connect

    Salazar-Serrano, Luis José; Valencia, Alejandra; Torres, Juan P.

    2015-03-15

    We report the implementation of a tunable beam displacer, composed of a polarizing beam splitter (PBS) and two mirrors, that divides an initially polarized beam into two parallel beams whose separation can be continuously tuned. The two output beams are linearly polarized with either vertical or horizontal polarization and no optical path difference is introduced between them. The wavelength dependence of the device as well as the maximum separation between the beams achievable is limited mainly by the PBS characteristics.

  2. EURAMET.RI(I)-S7 comparison of alanine dosimetry systems for absorbed dose to water measurements in gamma- and x-radiation at radiotherapy levels

    NASA Astrophysics Data System (ADS)

    Garcia, Tristan; Anton, Mathias; Sharpe, Peter

    2012-01-01

    The National Physical Laboratory (NPL), the Physikalisch-Technische Bundesanstalt (PTB) and the Laboratoire National Henri Becquerel (LNE-LNHB) are involved in the European project 'External Beam Cancer Therapy', a project of the European Metrology Research Programme. Within this project, the electron paramagnetic resonance (EPR)/alanine dosimetric method has been chosen for performing measurements in small fields such as those used in IMRT (intensity modulated radiation therapy). In this context, these three National Metrology Institutes (NMI) wished to compare the result of their alanine dosimetric systems (detector, modus operandi etc) at radiotherapy dose levels to check their consistency. This EURAMET.RI(I)-S7 comparison has been performed with the support of the Bureau International des Poids et Mesures (BIPM) which collected and distributed the results as a neutral organization, to ensure the comparison was 'blind'. Irradiations have been made under reference conditions by each laboratory in a 60Co beam and in an accelerator beam (10 MV or 12 MV) in a water phantom of 30 cm × 30 cm × 30 cm in a square field of 10 cm × 10 cm at the reference depth. Irradiations have been performed at known values of absorbed dose to water (Dw) within 10% of nominal doses of 5 Gy and 10 Gy, i.e. between 4.5 Gy and 5.5 Gy and between 9 Gy and 11 Gy, respectively. Each participant read out their dosimeters and assessed the doses using their own protocol (calibration curve, positioning device etc) as this comparison aims at comparing the complete dosimetric process. The results demonstrate the effectiveness of the EPR/alanine dosimetry systems operated by National Metrology Institutes as a method of assuring therapy level doses with the accuracy required. The maximum deviation in the ratio of measured to applied dose is less than 1%. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key

  3. BEAM INSTRUMENTATION FOR HIGH POWER HADRON BEAMS

    SciTech Connect

    Aleksandrov, Alexander V

    2013-01-01

    This presentation will describe developments in the beam diagnostics which support the understanding and operation of high power hadron accelerators. These include the measurement of large dynamic range transverse and longitudinal beam profiles, beam loss detection, and non-interceptive diagnostics.

  4. Propagation-invariant beams with quantum pendulum spectra: from Bessel beams to Gaussian beam-beams.

    PubMed

    Dennis, Mark R; Ring, James D

    2013-09-01

    We describe a new class of propagation-invariant light beams with Fourier transform given by an eigenfunction of the quantum mechanical pendulum. These beams, whose spectra (restricted to a circle) are doubly periodic Mathieu functions in azimuth, depend on a field strength parameter. When the parameter is zero, pendulum beams are Bessel beams, and as the parameter approaches infinity, they resemble transversely propagating one-dimensional Gaussian wave packets (Gaussian beam-beams). Pendulum beams are the eigenfunctions of an operator that interpolates between the squared angular momentum operator and the linear momentum operator. The analysis reveals connections with Mathieu beams, and insight into the paraxial approximation.

  5. Methoxychlor enhances degranulation of murine mast cells by regulating FcεRI-mediated signal transduction.

    PubMed

    Yasunaga, Sho; Nishi, Kosuke; Nishimoto, Sogo; Sugahara, Takuya

    2015-01-01

    Methoxychlor, an organochlorine insecticide developed to replace DDT (dichlorodiphenyltrichloroethane), has been reported to induce mast cell degranulation and to enhance IgE-mediated allergic responses. However, the mechanisms underlying these effects are not clear. To clarify potential mechanisms, the effects of methoxychlor on degranulation of mast cells were examined. Degranulation responses were evaluated using RBL-2H3 cells and mouse bone marrow-derived mast cells with either the antigen-induced or calcium ionophore-induced stimulation. Phosphorylation of enzymes related to signaling events associated with mast cell degranulation was analyzed by immunoblotting. Effects on vascular permeability in the passive cutaneous anaphylaxis reaction were evaluated following oral administration of methoxychlor to BALB/c mice. The results indicated that methoxychlor caused increased mast cell degranulation in the presence of antigen, whereas it had no effect on calcium ionophore-induced degranulation of RBL-2H3 cells. Immunoblot analyses demonstrated that the phosphorylation level of phosphoinositide 3-kinase (which plays a central role in mast cell signaling) was increased by methoxychlor during antigen-induced degranulation. In addition, methoxychlor activated the signaling pathway via the high-affinity IgE receptor by inducing phosphorylation of Syk and PLCγ1/2, which transfer the signal for degranulation downstream. Lastly, oral administration of methoxychlor exhibited a tendency to promote vascular permeability in passive cutaneous anaphylaxis model mice. Taken together, the results here suggested that methoxychlor enhanced degranulation through FcεRI-mediated signaling and promoted allergenic symptoms involved in mast cell degranulation.

  6. SERS nanosensors that report pH of endocytic compartments during FcεRI transit

    PubMed Central

    Nowak-Lovato, K.L.; Wilson, Bridget S.; Rector, K.D.

    2011-01-01

    Recently, the development of an IgE receptor (FcεRI)-targeted, pH sensitive, surface-enhanced Raman spectroscopy (SERS) nanosensor has been demonstrated [1]. The targeted nanosensor enables spatial and temporal pH measurements as internalized receptors progress through endosomal compartments in live cells. Trafficking of receptor-bound nanosensors was compared at physiological temperature (37°C) versus room temperature (25°C). As expected, we observed markedly slower progression of receptors through low pH endocytic compartments at the lower temperature. We also demonstrate the utility of the nanosensors to measure directly changes in the pH of intracellular compartments after treatment with bafilomycin or amiloride. We report an increase in endosome compartment pH after treatment with bafilomycin, an H+ ATPase pump inhibitor. Decreased endosomal luminal pH was measured in cells treated with amiloride, an inhibitor of Na+/H+ exchange. The decrease in amiloride-treated cells was transient, followed by a recovery period of approximately 15–20 minutes to restore endosomal pH. These experiments demonstrate the novel application of Raman spectroscopy to monitor local pH environment in live cells with the use of targeted SERS nanosensors. PMID:20842349

  7. The EnRiCH Community Resilience Framework for High-Risk Populations

    PubMed Central

    O'Sullivan, Tracey L.; Kuziemsky, Craig E.; Corneil, Wayne; Lemyre, Louise; Franco, Zeno

    2014-01-01

    Introduction: Resilience has been described in many ways and is inherently complex. In essence, it refers to the capacity to face and do well when adversity is encountered. There is a need for empirical research on community level initiatives designed to enhance resilience for high-risk groups as part of an upstream approach to disaster management. In this study, we address this issue, presenting the EnRiCH Community Resilience Framework for High-Risk Populations. Methods: The framework presented in this paper is empirically-based, using qualitative data from focus groups conducted as part of an asset-mapping intervention in five communities in Canada, and builds on extant literature in the fields of disaster and emergency management, health promotion, and community development. Results: Adaptive capacity is placed at the centre of the framework as a focal point, surrounded by four strategic areas for intervention (awareness/communication, asset/resource management, upstream-oriented leadership, and connectedness/engagement). Three drivers of adaptive capacity (empowerment, innovation, and collaboration) cross-cut the strategic areas and represent levers for action which can influence systems, people and institutions through expansion of asset literacy. Each component of the framework is embedded within the complexity and culture of a community. Discussion: We present recommendations for how this framework can be used to guide the design of future resilience-oriented initiatives with particular emphasis on inclusive engagement across a range of functional capabilities. PMID:25642373

  8. The R.I. Pimenov unified gravitation and electromagnetism field theory as semi-Riemannian geometry

    SciTech Connect

    Gromov, N. A.

    2009-05-15

    More than forty years ago R.I. Pimenov introduced a new geometry-semi-Riemannian one-as a set of geometrical objects consistent with a fibering pr: M{sub n} {yields} M{sub m}. He suggested the heuristic principle according to which the physically different quantities (meter, second, Coulomb, etc.) are geometrically modelled as space coordinates that are not superposed by automorphisms. As there is only one type of coordinates in Riemannian geometry and only three types of coordinates in pseudo-Riemannian one, a multiple-fibered semi-Riemannian geometry is the most appropriate one for the treatment of more than three different physical quantities as unified geometrical field theory. Semi-Euclidean geometry {sup 3}R{sub 5}{sup 4} with 1-dimensional fiber x{sup 5} and 4-dimensional Minkowski space-time as a base is naturally interpreted as classical electrodynamics. Semi-Riemannian geometry {sup 3}V{sub 5}{sup 4} with the general relativity pseudo-Riemannian space-time {sup 3}V{sub 4}, and 1-dimensional fiber x{sup 5}, responsible for the electromagnetism, provides the unified field theory of gravitation and electromagnetism. Unlike Kaluza-Klein theories, where the fifth coordinate appears in nondegenerate Riemannian or pseudo-Riemannian geometry, the theory based on semi-Riemannian geometry is free from defects of the former. In particular, scalar field does not arise.

  9. Hydrometeor Trajectories and Distributions in a Simulation of TC Rapid Intensification (RI)

    NASA Astrophysics Data System (ADS)

    Zhu, Z.; Zhu, P.

    2010-12-01

    It has long been recognized that the microphysics scheme used in a numerical simulation of tropical cyclones (TC) can greatly affect the precipitation distribution, intensity and thermodynamic structure of the simulated TC. This suggests that the mixing ratios, concentrations and size distributions of hydrometeor(snow, graupel,rain,cloud ice) are important factors in the evolution of TC . The transport of hydrometeor may have a strong influence on these factors through its interactions with the growth and the latent heat forcing of hydrometeor and the wind filed, hence is a key to understanding TC microphysics. Schematic hydrometeor trajectories were first constructed using 3-D wind field and particle fallspeeds derived from airborne radar observations in a steady-state mature hurricane,Alicia(1983). Since then, little effort has been put in understanding hydrometeor transport in TC, especially the potential link between its evolution and the intensity and structure changes in a non-steady-state TC. This study is focused on investigating such a link by means of numerical simulations of TC Rapid Intensification(RI) using WRF model. We use the tracer utility in WRF to construct hydrometeor trajectories. Most of the popular microphysics schemes are tested, and the most reasonable test( which is determined by comparing the simulated TC intensity and structure with airborne radar observations) and the ensemble mean of all the tests are picked for detailed examinations.

  10. Development of the plasma generator for a long pulse 10 x 40 neutral beam

    SciTech Connect

    Pincosy, P.A.; Ehlers, K.W.; Lietzke, A.F.; Owren, H.M.; Paterson, J.A.; Pyle, R.V.; Vella, M.C.

    1986-11-01

    Users of fusion devices have identified heating requirements for positive ion based neutral beams to include energies of 80 or 120 kV with pulse length up to 30 s. Additional requirements are low beam divergence (0.3/sup 0/ x 1.0/sup 0/; 1/e half angles), low impurity (less than 1%), high species (over 80% atomic), and cathode lifetime exceeding 5 h of beam operation. Accelerator design remains as an engineering problem, whereas most of the performance goals have required development of the plasma generator. Problems of concern which relate to the performance goals are the heat dissipation, magnetic field configuration, and cathode placement. The plasma generator was tested on TS IIA (the plasma generator testing facility) which does not have beam extraction capability but is used to evaluate efficiency, operating conditions, arc notching characteristics, species, plasma uniformity, and cathode conditioning. The source, consisting of the plasma generator mounted on the long pulse accelerator was mounted on NBETF (Neutral Beam Engineering Test Facility) for beam testing. During beam operation the back-streaming electrons add power to the source and affect the arc operation. Source durability and stability were studied at 80 kV and 40 A of accelerator current (deuterium). The arc efficiency was higher than the value used for the design. Power loading from back-streaming electrons was much less than the design level. With feedback control, plasma density and accel current were constant to +- 2% during 30-s shots. The beam atomic fraction of 84%-88% (deuterium) was slightly higher than measured on TS IIA. Cathode durability was tested by operating over 500, 30-s full shots at 80 kV and 40 A of deuterium. Arc conditioning was found to be an important phase to avoid filament damage.

  11. Antenna Beam Coverage Concepts

    NASA Technical Reports Server (NTRS)

    Estabrook, Polly; Motamedi, Masoud

    1990-01-01

    The strawman Personal Access Satellite System (PASS) design calls for the use of a CONUS beam for transmission between the supplier and the satellite and for fixed beams for transmission between the basic personal terminal and the satellite. The satellite uses a 3 m main reflector for transmission at 20 GHz and a 2 m main reflector for reception at 30 GHz. There are several types of spot beams under consideration for the PASS system besides fixed beams. The beam pattern of a CONUS coverage switched beam is shown along with that of a scanning beam. A switched beam refers to one in which the signal from the satellite is connected alternatively to various feed horns. Scanning beams are taken to mean beams whose footprints are moved between contiguous regions in the beam's coverage area. The advantages and disadvantages of switched and/or scanning beams relative to fixed beams. The consequences of using switched/scanning in lieu of fixed beams in the PASS design and attempts are made to evaluate the listed advantages and disadvantages. Two uses of switched/scanning beams are examined. To illustrate the implications of switched beams use on PASS system design, operation at two beam scan rates is explored.

  12. Basis of the 1:1 stoichiometry of the high affinity receptor Fc epsilon RI-IgE complex.

    PubMed

    Keown, M B; Ghirlando, R; Mackay, G A; Sutton, B J; Gould, H J

    1997-01-01

    A soluble fragment of the high-affinity IgE receptor Fc epsilon RI alpha-chain (sFc epsilon RI alpha) binds to the Fc fragment of IgE (IgE-Fc) as a 1:1 complex. IgE-Fc consists of a dimer of the C epsilon 2, C epsilon 3 and C epsilon 4 domains of the epsilon-heavy chain of IgE. This region of IgE has been modelled on the crystal structure of the Fc region of IgG1, which exhibits twofold rotational symmetry. This implies that IgE should be divalent with respect to its ligands. X-ray scattering studies reveal however that the twofold rotational symmetry of IgE-Fc is perturbed by a bend in the linker region between the C epsilon 2 and C epsilon 3 domains. The 1:1 stoichiometry could then arise from the conformational asymmetry or from steric occlusion of one of the sites by the overhanging C epsilon 2 domains. To test this hypothesis we have expressed a recombinant epsilon-chain fragment containing C epsilon 3 and C epsilon 4. This product, Fc epsilon 3-4, is secreted from cells as a disulphide linked dimer and binds with higher affinity than either IgE or IgE-Fc to cell surface Fc epsilon RI. Titration experiments, together with molecular mass measurements of the Fc epsilon 3-4/sFc epsilon RI alpha complex, reveal that Fc epsilon 3-4 binds only a single receptor molecule. This excludes the possibility that steric hindrance by C epsilon 2 accounts for the unexpected stoichiometry.

  13. Dental caries prevalence as a product of agriculture and subsistence pattern at the Yean-ri site, South Korea.

    PubMed

    Fujita, H; Hashimoto, H; Shoda, S; Suzuki, T

    2011-01-01

    Yean-ri human skeletal remains from South Korea have been dated to the fourth to seventh century AD. They have morphological similarities to immigrants of the Yayoi period excavated in northern Kyushu and Yamaguchi prefecture in Japan. The overall dental caries prevalence was 8.1% in the Yean-ri skeletal remains, indicating a much lower prevalence than that of most Yayoi immigrant skeletal remains from Japan, although similar to that of the Kofun people (8.3%) in Japan. There was no significant difference in the dental caries prevalence between the males and females of the same age group, but there were differences in the prevalence by age. The late middle age and elderly males and females had significantly higher dental caries prevalence than the early middle age males and females, indicating increased prevalence with age. Root caries prevalence tended to increase in old age. The percentage of root caries increased, accounting for 80% of all caries in Yean-ri human skeletal remains. Agriculture is believed to have arisen approximately 3,000 years ago in Korea. Therefore, agriculture was practiced during this period, but since the Yean-ri tumuli are from coastal areas, their diet may have retained a significant marine component. Additionally, caries prevalence was not very high in Nukdo human remains (ca. 2100-2000 BC) in Korea. We speculate that they maintained subsistence activities suitable for their environment despite their knowledge of agriculture. This hypothesis is supported by differences in the caries prevalence between excavation sites of the Yayoi and Kofun periods in Japan.

  14. Carboplatin-induced severe hypersensitivity reaction: role of IgE-dependent basophil activation and FcεRI.

    PubMed

    Iwamoto, Takuya; Hirai, Hiroyuki; Yamaguchi, Nozomi; Kobayashi, Natsuki; Sugimoto, Hiroko; Tabata, Tsutomu; Okuda, Masahiro

    2014-11-01

    Basophil activation was observed in patients with a history of carboplatin-induced severe hypersensitivity reaction (HR). However, the precise mechanism by which carboplatin induces basophil activation and the associated surrogate markers remains to be elucidated. To investigate whether IgE-dependent mechanisms, including the overexpression of FcεRI, participate in carboplatin-induced basophil activation, 13 ovarian cancer patients were enrolled: 5 with a history of carboplatin-induced severe hypersensitivity reaction within the past 2 years, and 8 with no such history. The expression levels of FcεRI, IgE, and CD203c on basophils were measured using a flow cytometer. Immunoglobulin E-dependent basophil activation was evaluated by testing for IgE passive sensitization using lactic acid, and by testing for phosphatidylinositol 3-kinase inhibition, using wortmannin. In three patients positive for carboplatin hypersensitivity, pretreatment with wortmannin almost completely inhibited carboplatin-induced basophil activation (P < 0.05). In a healthy control subject, whose own IgE showed no response to carboplatin, acquired reactivity to carboplatin when exposed to plasma from patients positive for carboplatin hypersensitivity. This did not occur when the same experiment was carried out using plasma from the patients negative for carboplatin hypersensitivity. Moreover, pretreatment with omalizumab, a monoclonal anti-IgE antibody, almost completely blocked carboplatin-induced basophil activation in the plasma of patients positive for carboplatin hypersensitivity. On further investigation, the HR-positive group had significantly higher levels of FcεRI compared with the negative group (P < 0.05). In conclusion, an IgE-dependent mechanism incorporating FcεRI overexpression participates in carboplatin-induced severe HR. These results establish the relevance of monitoring the pharmacodynamic changes of basophils to prevent carboplatin-induced severe HR.

  15. Positive and negative regulation of FcepsilonRI-mediated signaling by the adaptor protein LAB/NTAL.

    PubMed

    Zhu, Minghua; Liu, Yan; Koonpaew, Surapong; Granillo, Olivia; Zhang, Weiguo

    2004-10-18

    Linker for activation of B cells (LAB, also called NTAL; a product of wbscr5 gene) is a newly identified transmembrane adaptor protein that is expressed in B cells, NK cells, and mast cells. Upon BCR activation, LAB is phosphorylated and interacts with Grb2. LAB is capable of rescuing thymocyte development in LAT-deficient mice. To study the in vivo function of LAB, LAB-deficient mice were generated. Although disruption of the Lab gene did not affect lymphocyte development, it caused mast cells to be hyperresponsive to stimulation via the FcepsilonRI, evidenced by enhanced Erk activation, calcium mobilization, degranulation, and cytokine production. These data suggested that LAB negatively regulates mast cell function. However, mast cells that lacked both linker for activation of T cells (LAT) and LAB proteins had a more severe block in FcepsilonRI-mediated signaling than LAT(-/-) mast cells, demonstrating that LAB also shares a redundant function with LAT to play a positive role in FcepsilonRI-mediated signaling.

  16. Telecommunication using muon beams

    DOEpatents

    Arnold, Richard C.

    1976-01-01

    Telecommunication is effected by generating a beam of mu mesons or muons, varying a property of the beam at a modulating rate to generate a modulated beam of muons, and detecting the information in the modulated beam at a remote location.

  17. Aryl hydrocarbon receptor-dependent induction of the IgA receptor FcαRI by the environmental contaminant benzo(a)pyrene in human macrophages.

    PubMed

    Pinel-Marie, Marie-Laure; Louarn, Laetitia; Desmots, Sophie; Fardel, Olivier; Sparfel, Lydie

    2011-11-28

    Polycyclic aromatic hydrocarbons (PAHs), such as benzo(a)pyrene (BaP), are widely distributed toxic environmental contaminants well known to regulate gene expression through activation of the aryl hydrocarbon receptor (AhR). In the present study, we demonstrated that the IgA receptor FcαRI/CD89 constitutes a molecular target for PAHs. Indeed, in vitro exposure to BaP markedly increased mRNA and protein expression of FcαRI in primary human macrophages; intratracheal instillation of BaP to rats also enhanced mRNA expression of FcαRI in alveolar macrophages. BaP concomitantly increased activity of the previously uncharacterized -1734 to -42 fragment of the FcaRI promoter that we subcloned in a luciferase reporter vector. Three-methylcholanthrene, a PAH known to activate AhR like BaP, induced FcαRI expression, in contrast to benzo(e)pyrene, a PAH known to poorly interact with AhR. Moreover, FcαRI induction in BaP-exposed human macrophages was fully prevented by down-regulating AhR expression through small interference RNA transfection. In addition, BaP increased nuclear protein binding to a consensus AhR-related xenobiotic-responsive element found in the FcαRI gene promoter, as revealed by electrophoretic mobility shift assay. Overall, these data highlight an AhR-dependent up-regulation of FcαRI in response to BaP, which may contribute to the deleterious effects of environmental PAHs toward the immune/inflammatory response and which also likely emphasizes the role played by AhR in the regulation of genes involved in immunity and inflammation.

  18. Changes in force production and stroke parameters of trained able-bodied and unilateral arm-amputee female swimmers during a 30 s tethered front-crawl swim.

    PubMed

    Lee, Casey Jane; Sanders, Ross H; Payton, Carl J

    2014-01-01

    This study examined changes in the propulsive force and stroke parameters of arm-amputee and able-bodied swimmers during tethered swimming. Eighteen well-trained female swimmers (nine unilateral arm amputees and nine able-bodied) were videotaped performing maximal-effort 30 s front-crawl swims, while attached to a load cell mounted on a pool wall. Tether force, stroke rate, stroke phase durations and inter-arm angle were quantified. The able-bodied group produced significantly higher mean and maximum tether forces than the amputee group. The mean of the intra-cyclic force peaks was very similar for both groups. Mean and maximum tether force had significant negative associations with 100 m swim time, for both groups. Both groups exhibited a similar fatigue index (relative decrease in tether force) during the test, but the amputees had a significantly greater stroke rate decline. A significant positive association between stroke rate decline and fatigue index was obtained for the able-bodied group only. Inter-arm angle and relative phase durations did not change significantly during the test for either group, except the recovery phase duration of the arm amputees, which decreased significantly. This study's results can contribute to the development of a more evidence-based classification system for swimmers with a disability.

  19. Lithium- and boron-bearing brines in the Central Andes: exploring hydrofacies on the eastern Puna plateau between 23° and 23°30'S

    NASA Astrophysics Data System (ADS)

    Steinmetz, R. L. López

    2016-04-01

    Internally drained basins of the Andean Plateau are lithium- and boron-bearing systems. The exploration of ionic facies and parental links in a playa lake located in the eastern Puna (23°-23°30'S) was assessed by hydrochemical determinations of residual brines, feed waters and solutions from weathered rocks. Residual brines have been characterized by the Cl- (SO4 =)/Na+ (K+) ratio. Residual brines from the playa lake contain up to 450 mg/l of boron and up to 125 mg/l of lithium, and the Las Burras River supplies the most concentrated boron (20 mg/l) and lithium (3.75 mg/l) inflows of the basin. The hydro-geochemical assessment allowed for the identification of three simultaneous sources of boron: (1) inflow originating from granitic areas of the Aguilar and Tusaquillas ranges; (2) weathering of the Ordovician basement; and (3) boron-rich water from the Las Burras River. Most of the lithium input of the basin is likely generated by present geothermal sources rather than by weathering and leaching of ignimbrites and plutonic rocks. However, XRD analyses of playa lake sediments revealed the presence of lithian micas of clastic origin, including taeniolite and eucriptite. This study is the first to document these rare Li-micas from the Puna basin. Thus, both residual brines and lithian micas contribute to the total Li content in the studied hydrologic system.

  20. Human Eosinophils Express the High Affinity IgE Receptor, FcεRI, in Bullous Pemphigoid

    PubMed Central

    Messingham, Kelly N.; Holahan, Heather M.; Frydman, Alexandra S.; Fullenkamp, Colleen; Srikantha, Rupasree; Fairley, Janet A.

    2014-01-01

    Bullous pemphigoid (BP) is an autoimmune blistering disease mediated by autoantibodies targeting BP180 (type XVII collagen). Patient sera and tissues typically have IgG and IgE autoantibodies and elevated eosinophil numbers. Although the pathogenicity of the IgE autoantibodies is established in BP, their contribution to the disease process is not well understood. Our aims were two-fold: 1) To establish the clinical relationships between total and BP180-specific IgE, eosinophilia and other markers of disease activity; and 2) To determine if eosinophils from BP patients express the high affinity IgE receptor, FcεRI, as a potential mechanism of action for IgE in BP. Our analysis of 48 untreated BP patients revealed a correlation between BP180 IgG and both BP180 IgE and peripheral eosinophil count. Additionally, we established a correlation between total IgE concentration and both BP180 IgE levels and eosinophil count. When only sera from patients (n = 16) with total IgE≥400 IU/ml were analyzed, BP180 IgG levels correlated with disease severity, BP230 IgG, total circulating IgE and BP180 IgE. Finally, peripheral eosinophil count correlated more strongly with levels of BP180 IgE then with BP180 IgG. Next, eosinophil FcεRI expression was investigated in the blood and skin using several methods. Peripheral eosinophils from BP patients expressed mRNA for all three chains (α, β and γ) of the FcεRI. Surface expression of the FcεRIα was confirmed on both peripheral and tissue eosinophils from most BP patients by immunostaining. Furthermore, using a proximity ligation assay, interaction of the α- and β-chains of the FcεRI was observed in some biopsy specimens, suggesting tissue expression of the trimeric receptor form in some patients. These studies provide clinical support for the relevance of IgE in BP disease and provide one mechanism of action of these antibodies, via binding to the FcεRI on eosinophils. PMID:25255430

  1. Human eosinophils express the high affinity IgE receptor, FcεRI, in bullous pemphigoid.

    PubMed

    Messingham, Kelly N; Holahan, Heather M; Frydman, Alexandra S; Fullenkamp, Colleen; Srikantha, Rupasree; Fairley, Janet A

    2014-01-01

    Bullous pemphigoid (BP) is an autoimmune blistering disease mediated by autoantibodies targeting BP180 (type XVII collagen). Patient sera and tissues typically have IgG and IgE autoantibodies and elevated eosinophil numbers. Although the pathogenicity of the IgE autoantibodies is established in BP, their contribution to the disease process is not well understood. Our aims were two-fold: 1) To establish the clinical relationships between total and BP180-specific IgE, eosinophilia and other markers of disease activity; and 2) To determine if eosinophils from BP patients express the high affinity IgE receptor, FcεRI, as a potential mechanism of action for IgE in BP. Our analysis of 48 untreated BP patients revealed a correlation between BP180 IgG and both BP180 IgE and peripheral eosinophil count. Additionally, we established a correlation between total IgE concentration and both BP180 IgE levels and eosinophil count. When only sera from patients (n = 16) with total IgE ≥ 400 IU/ml were analyzed, BP180 IgG levels correlated with disease severity, BP230 IgG, total circulating IgE and BP180 IgE. Finally, peripheral eosinophil count correlated more strongly with levels of BP180 IgE then with BP180 IgG. Next, eosinophil FcεRI expression was investigated in the blood and skin using several methods. Peripheral eosinophils from BP patients expressed mRNA for all three chains (α, β and γ) of the FcεRI. Surface expression of the FcεRIα was confirmed on both peripheral and tissue eosinophils from most BP patients by immunostaining. Furthermore, using a proximity ligation assay, interaction of the α- and β-chains of the FcεRI was observed in some biopsy specimens, suggesting tissue expression of the trimeric receptor form in some patients. These studies provide clinical support for the relevance of IgE in BP disease and provide one mechanism of action of these antibodies, via binding to the FcεRI on eosinophils. PMID:25255430

  2. Parabolic scaling beams.

    PubMed

    Gao, Nan; Xie, Changqing

    2014-06-15

    We generalize the concept of diffraction free beams to parabolic scaling beams (PSBs), whose normalized intensity scales parabolically during propagation. These beams are nondiffracting in the circular parabolic coordinate systems, and all the diffraction free beams of Durnin's type have counterparts as PSBs. Parabolic scaling Bessel beams with Gaussian apodization are investigated in detail, their nonparaxial extrapolations are derived, and experimental results agree well with theoretical predictions.

  3. Automated beam builder

    NASA Technical Reports Server (NTRS)

    Muench, W. K.

    1980-01-01

    Requirements for the space fabrication of large space structures are considered with emphasis on the design, development, manufacture, and testing of a machine which automatically produces a basic building block aluminum beam. Particular problems discussed include those associated with beam cap forming; brace storage, dispensing, and transporting; beam component fastening; and beam cut-off. Various critical process tests conducted to develop technology for a machine to produce composite beams are also discussed.

  4. SUMMARY OF BEAM BEAM OBSERVATIONS DURING STORES IN RHIC.

    SciTech Connect

    FISCHER,W.

    2003-05-19

    During stores, the beam-beam interaction has a significant impact on the beam and luminosity lifetimes in RHIC. This was observed in heavy ion, and even more pronounced in proton collisions. Observations include measurements of beam-beam induced tune shifts, lifetime and emittance growth measurements with and without beam-beam interaction, and background rates as a function of tunes. In addition, RHIC is currently the only hadron collider in which strong-strong beam-beam effects can be seen. Coherent beam-beam modes were observed, and suppressed by tune changes. In this article we summarize the most important beam-beam observations made during stores so far.

  5. Enhanced production of single copy backbone-free transgenic plants in multiple crop species using binary vectors with a pRi replication origin in Agrobacterium tumefaciens.

    PubMed

    Ye, Xudong; Williams, Edward J; Shen, Junjiang; Johnson, Susan; Lowe, Brenda; Radke, Sharon; Strickland, Steve; Esser, James A; Petersen, Michael W; Gilbertson, Larry A

    2011-08-01

    Single transgene copy, vector backbone-free transgenic crop plants are highly desired for functional genomics and many biotechnological applications. We demonstrate that binary vectors that use a replication origin derived from the Ri plasmid of Agrobacterium rhizogenes (oriRi) increase the frequency of single copy, backbone-free transgenic plants in Agrobacterium tumefaciens mediated transformation of soybean, canola, and corn, compared to RK2-derived binary vectors (RK2 oriV). In large scale soybean transformation experiments, the frequency of single copy, backbone-free transgenic plants was nearly doubled in two versions of the oriRi vectors compared to the RK2 oriV control vector. In canola transformation experiments, the oriRi vector produced more single copy, backbone-free transgenic plants than did the RK2 oriV vector. In corn transformation experiments, the frequency of single copy backbone-free transgenic plants was also significantly increased when using the oriRi vector, although the transformation frequency dropped. These results, derived from transformation experiments using three crops, indicate the advantage of oriRi vectors over RK2 oriV binary vectors for the production of single copy, backbone-free transgenic plants using Agrobacterium-mediated transformation.

  6. Measuring and monitoring in the South African Kha Ri Gude mass literacy campaign

    NASA Astrophysics Data System (ADS)

    McKay, Veronica

    2015-06-01

    After many previous failed attempts to reach illiterate adults, the award-winning South African Kha Ri Gude mass literacy campaign, launched in 2008, undertook to ensure that learners seized the opportunity to learn - for many adults, this was a "last chance". Written from an insider perspective by the campaign's founding Chief Executive Officer, this article outlines the features which contributed to its success despite the many challenges it initially faced. The author outlines the social and legislative backdrop, notably the South African National Qualifications Framework (NQF) providing the scaffold for the continuum of adult learning and the assessment of learning outcomes, and examines the various components which influenced the design of the campaign. She focuses, in particular, on the learning outcomes measurement model tailored to the campaign's specific context, namely a structured and standardised learner assessment portfolio (LAP). Designed as a tool to be administered universally for both formative and diagnostic purposes, the portfolio enables continuous assessment, forming an integral part of the process of learning and teaching. After many initial challenges encountered in introducing this mode of learner assessment, it was eventually institutionalised and found to be a non-threatening way of assessing learning outcomes while also functioning as a tool for monitoring and ensuring accountability in the campaign. This article gives an account of the development considerations and explains the role of the assessment process within the broader context of the campaign. It also refers to ways in which the mass-based assessments were administered under difficult campaign conditions with a view to assessing for learning.

  7. Tevatron beam-beam compensation project progress

    SciTech Connect

    Shiltsev, V.; Zhang, X.L.; Kuznetsov, G.; Pfeffer, H.; Saewert, G.; Zimmermann, F.; Tiunov, M.; Bishofberger, K.; Bogdanov, I.; Kashtanov, E.; Kozub, S.; Sytnik, V.; Tkachenko, L.; /Serpukhov, IHEP

    2005-05-01

    In this paper, we report the progress of the Tevatron Beam-Beam Compensation (BBC) project [1]. Electron beam induced proton and antiproton tuneshifts have been reported in [2], suppression of an antiproton emittance growth has been observed, too [1]. Currently, the first electron lens (TEL1) is in operational use as the Tevatron DC beam cleaner. We have made a lot of the upgrades to improve its stability [3]. The 2nd Tevatron electron lens (TEL2) is under the final phase of development and preparation for installation in the Tevatron.

  8. ION BEAM COLLIMATOR

    DOEpatents

    Langsdorf, A.S. Jr.

    1957-11-26

    A device is described for defining a beam of high energy particles wherein the means for defining the beam in the horizontal and vertical dimension are separately adjustable and the defining members are internally cooled. In general, the device comprises a mounting block having a central opening through which the beam is projected, means for rotatably supporting two pairs of beam- forming members, passages in each member for the flow of coolant; the beam- forming members being insulated from each other and the block, and each having an end projecting into the opening. The beam-forming members are adjustable and may be cooperatively positioned to define the beam passing between the end of the members. To assist in projecting and defining the beam, the member ends have individual means connected thereto for indicating the amount of charge collected thereon due to beam interception.

  9. Hyperfine structure measurement of 87Rb atoms injected into superfluid helium as highly energetic ion beam

    NASA Astrophysics Data System (ADS)

    Imamura, Kei; Furukawa, Takeshi; Yang, Xiaofei; Fujita, Tomomi; Wakui, Takashi; Mitsuya, Yousuke; Hayasaka, Miki; Ichikawa, Yuichi; Hatakeyama, Atsushi; Kobayashi, Tohru; Odashima, Hitoshi; Ueno, Hideki; Matsuo, Yukari; Orochi Collaboration

    2014-09-01

    We have developed a new nuclear laser spectroscopy technique that is called OROCHI (Optical RI-atoms Observation in Condensed Helium as Ioncatcher). In OROCHI, highly energetic ion beam is injected into superfluid helium (He II) and is trapped as atoms. Hyperfine structure (HFS) and Zeeman splitting of trapped atoms is measured using laser-microwave (MW)/radiofrequency (RF) double resonance method. We deduce nuclear moments and spin values from the measured splittings, respectively So far, we measured Zeeman splitting of 84-87Rb atoms To evaluate the validity of the OROCHI method, it is necessary to investigate the following two points not only for Zeeman but also for HFS splitings. (i) What is the accuracy in frequency in our measurement? (ii) How high beam intensity is necessary to observe resonance spectra? For this purpose we conducted online experiment using 87Rb beam and measured the HFS splitting of injected 87Rb atoms in He II.

  10. Beam position monitor

    DOEpatents

    Alkire, Randy W.; Rosenbaum, Gerold; Evans, Gwyndaf

    2003-07-22

    An apparatus for determining the position of an x-ray beam relative to a desired beam axis. Where the apparatus is positioned along the beam path so that a thin metal foil target intersects the x-ray beam generating fluorescent radiation. A PIN diode array is positioned so that a portion of the fluorescent radiation is intercepted by the array resulting in an a series of electrical signals from the PIN diodes making up the array. The signals are then analyzed and the position of the x-ray beam is determined relative to the desired beam path.

  11. Pyramid beam splitter

    DOEpatents

    McKeown, Mark H.; Beason, Steven C.; Fairer, George

    1992-01-01

    The apparatus of the present invention provides means for obtaining accurate, dependable, measurement of bearings and directions for geologic mapping in subterranean shafts, such as, for example, nuclear waste storage investigations. In operation, a laser beam is projected along a reference bearing. A pyramid is mounted such that the laser beam is parallel to the pyramid axis and can impinge on the apex of the pyramid thus splitting the beam several ways into several beams at right angles to each other and at right angles to the reference beam. The pyramid is also translatable and rotatable in a plane perpendicular to the reference beam.

  12. A high-resolution beam profile measuring system for high-current ion implanters

    NASA Astrophysics Data System (ADS)

    Fujishita, N.; Noguchi, K.; Sasaki, S.; Yamamoto, H.

    1991-04-01

    A high-resolution beam profile measuring system (BPM) has been developed to analyze the correlation between charging damage and the ion beam profile for high-current ion implanters. With the increase of the ion beam current, insulators such as thin oxide layers of VLSI devices are subject to charging damage during ion implantation. To obtain accurate information on the local current density of the ion beam, 125 Faraday cups are placed in the BPM. This system has two measuring modes. One is a topographic mode that can detect the ion beam current density of 12500 sampling points in 30 s. A high-resolution contour map of the current density distribution is displayed on a CRT. The other is a real-time mode in which the current density distribution (125 sampling points) of the ion beam can be monitored every half second on the CRT. In this mode, fine adjustment of the ion beam profile is easily possible by visual control. The charging damage of insulating layers in the TEG (test element group) to the beam profile was investigated using this newly developed BPM. It has been proven that the damage probability increases rapidly above some threshold level of the beam current density. It is confirmed that for high-current implantation a uniform current density distribution of the ion beam is very effective to prevent charging damage. It is concluded that this measuring system is valuable not only for quick analysis of damage phenomena, but also for evaluating machine performance.

  13. First flight of SMASH, the SwRI Miniature Assembly for Solar Hard X-rays

    NASA Astrophysics Data System (ADS)

    Caspi, Amir; Laurent, Glenn Thomas; Shoffner, Michael; Higuera Caubilla, David; Meurisse, Jeremie; Smith, Kelly; Shih, Albert Y.; Saint-Hilaire, Pascal; DeForest, Craig; Mansour, Nagi N.; Hathaway, David H.

    2016-05-01

    The SwRI Miniature Assembly for Solar Hard X-rays (SMASH) was successfully flown from Antarctica in January (19-30) 2016, as a piggy-back instrument on the Gamma-Ray Imager/Polarimeter for Solar flares (GRIPS) high altitude balloon payload. SMASH is a technological demonstration of a new miniaturized hard X-ray (HXR) detector for use on CubeSats and other small spacecraft, including the proposed CubeSat Imaging X-ray Solar Spectrometer (CubIXSS).HXRs are the observational signatures of energetic processes on the Sun, including plasma heating and particle acceleration. One of the goals of CubIXSS will be to address the question of how plasma is heated during solar flares, including the relationship between thermal plasma and non-thermal particles. SMASH demonstrated the space-borne application of the commercial off-the-shelf Amptek X123-CdTe, a miniature cadmium telluride photon-counting HXR spectrometer. The CdTe detector has a physical area of 25 mm^2 and 1 mm fully-depleted thickness, with a ~100 micron Be window; with on-board thermoelectric cooling and pulse pile-up rejection, it is sensitive to solar photons from ~5 to ~100 keV with ~0.5-1.0 keV FWHM resolution. Photons are accumulated into histogram spectra with customizable energy binning and integration time. With modest resource requirements (~1/8 U, ~200 g, ~2.5 W) and low cost (~$10K), the X123-CdTe is an attractive solution for HXR measurements from budget- and resource-limited platforms such as CubeSats. SMASH flew two identical X123-CdTe detectors for redundancy and increased collecting area; the supporting electronics (power, CPU) were largely build-to-print using the Miniature X-ray Solar Spectrometer (MinXSS) CubeSat design.We review the SMASH mission, design, and detector performance during the 12-day Antarctic flight. We present current progress on our data analysis of observed solar flares, and discuss future applications of the space-qualified X123-CdTe detector, including the CubIXSS mission

  14. Successful Beam-Beam Tuneshift Compensation

    SciTech Connect

    Bishofberger, Kip Aaron

    2005-01-01

    The performance of synchrotron colliders has been limited by the beam-beam limit, a maximum tuneshift that colliding bunches could sustain. Due to bunch-to-bunch tune variation and intra-bunch tune spread, larger tuneshifts produce severe emittance growth. Breaking through this constraint has been viewed as impossible for several decades. This dissertation introduces the physics of ultra-relativistic synchrotrons and low-energy electron beams, with emphasis placed on the limits of the Tevatron and the needs of a tuneshift-compensation device. A detailed analysis of the Tevatron Electron Lens (TEL) is given, comparing theoretical models to experimental data whenever possible. Finally, results of Tevatron operations with inclusion of the TEL are presented and analyzed. It is shown that the TEL provides a way to shatter the previously inescapable beam-beam limit.

  15. BEAMS3D Neutral Beam Injection Model

    SciTech Connect

    Lazerson, Samuel

    2014-04-14

    With the advent of applied 3D fi elds in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous velocity reduction, and pitch angle scattering are modeled with the ADAS atomic physics database [1]. Benchmark calculations are presented to validate the collisionless particle orbits, neutral beam injection model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields.

  16. Regulation of rat basophilic leukemia-2H3 mast cell secretion by a constitutive Lyn kinase interaction with the high affinity IgE receptor (Fc epsilon RI).

    PubMed

    Vonakis, Becky M; Gibbons, Scott P; Rotté, Masashi J; Brothers, Elizabeth A; Kim, Seok C; Chichester, Kristin; MacDonald, Susan M

    2005-10-01

    Signaling through the high affinity IgE receptor is initiated by noncovalently associated Lyn kinase, resulting in the secretion of inflammatory mediators from mast cells. A fraction of the total cellular Lyn is associated via its N-terminal unique domain with the cytoplasmic domain of the Fc epsilonRI beta subunit before receptor aggregation. In the current study, we stably transfected the unique domain of Lyn into rat basophilic leukemia-2H3 mast cells and examined the consequences on Fc epsilonRI-induced signal transduction and mediator secretion to further define the role of the unique domain of Lyn in mast cell secretion. Tyrosine phosphorylation of Fc epsilonRI beta and gamma subunits was partially inhibited in the Lyn unique domain transfectants after Ag stimulation. Ag stimulation of Lyn unique domain transfectants was accompanied by enhanced phosphorylation of MEK and ERK-2, which are required for leukotriene C4 (LTC4) release, and production of LTC4 was increased 3- to 5-fold, compared with cells transfected with vector alone. Conversely, tyrosine phosphorylation of the adaptor protein Gab2, which is essential for mast cell degranulation, was inhibited after Ag stimulation of Lyn unique domain transfectants, and Ag-induced release of histamine was inhibited up to 48%. In rat basophilic leukemia-2H3 cells, Lyn thus plays a dual role by positively regulating Fc epsilonRI phosphorylation and degranulation while negatively regulating LTC4 production. This study provides further evidence that the constitutive interaction between the unique domain of Lyn and the Fc epsilonRI beta subunit is a crucial step in the initiation of Fc epsilonRI signaling and that Lyn is limiting for Fc epsilonRI-induced secretion of inflammatory mediators.

  17. Anomalous beam diffusion near beam-beam synchrobetatron resonances

    NASA Astrophysics Data System (ADS)

    Sen, Tanaji

    2012-10-01

    The diffusion process near low order synchrobetatron resonances driven by beam-beam interactions at a crossing angle is investigated. Macroscopic observables such as beam emittance, lifetime, and beam profiles are calculated. These are followed with detailed studies of microscopic quantities such as the evolution of the variance at several transverse amplitudes and single particle probability distribution functions. We present evidence to show that the observed diffusion is anomalous and the dynamics follows a non-Markovian continuous time random walk process. We derive a modified master equation to replace the Chapman-Kolmogorov equation in action-angle space and a fractional diffusion equation to describe the density evolution for this class of processes.

  18. Engineered selective plant male sterility through pollen-specific expression of the EcoRI restriction endonuclease.

    PubMed

    Millwood, Reginald J; Moon, Hong S; Poovaiah, Charleson R; Muthukumar, Balasubramaniam; Rice, John Hollis; Abercrombie, Jason M; Abercrombie, Laura L; Green, William Derek; Stewart, Charles Neal

    2016-05-01

    Unintended gene flow from transgenic plants via pollen, seed and vegetative propagation is a regulatory concern because of potential admixture in food and crop systems, as well as hybridization and introgression to wild and weedy relatives. Bioconfinement of transgenic pollen would help address some of these concerns and enable transgenic plant production for several crops where gene flow is an issue. Here, we demonstrate the expression of the restriction endonuclease EcoRI under the control of the tomato pollen-specific LAT52 promoter is an effective method for generating selective male sterility in Nicotiana tabacum (tobacco). Of nine transgenic events recovered, four events had very high bioconfinement with tightly controlled EcoRI expression in pollen and negligible-to-no expression other plant tissues. Transgenic plants had normal morphology wherein vegetative growth and reproductivity were similar to nontransgenic controls. In glasshouse experiments, transgenic lines were hand-crossed to both male-sterile and emasculated nontransgenic tobacco varieties. Progeny analysis of 16 000-40 000 seeds per transgenic line demonstrated five lines approached (>99.7%) or attained 100% bioconfinement for one or more generations. Bioconfinement was again demonstrated at or near 100% under field conditions where four transgenic lines were grown in close proximity to male-sterile tobacco, and 900-2100 seeds per male-sterile line were analysed for transgenes. Based upon these results, we conclude EcoRI-driven selective male sterility holds practical potential as a safe and reliable transgene bioconfinement strategy. Given the mechanism of male sterility, this method could be applicable to any plant species.

  19. Application of STORMTOOLS's simplified flood inundation model with sea level rise to assess impacts to RI coastal areas

    NASA Astrophysics Data System (ADS)

    Spaulding, M. L.

    2015-12-01

    The vision for STORMTOOLS is to provide access to a suite of coastal planning tools (numerical models et al), available as a web service, that allows wide spread accessibly and applicability at high resolution for user selected coastal areas of interest. The first product developed under this framework were flood inundation maps, with and without sea level rise, for varying return periods for RI coastal waters. The flood mapping methodology is based on using the water level vs return periods at a primary NOAA water level gauging station and then spatially scaling the values, based on the predictions of high resolution, storm and wave simulations performed by Army Corp of Engineers, North Atlantic Comprehensive Coastal Study (NACCS) for tropical and extratropical storms on an unstructured grid, to estimate inundation levels for varying return periods. The scaling for the RI application used Newport, RI water levels as the reference point. Predictions are provided for once in 25, 50, and 100 yr return periods (at the upper 95% confidence level), with sea level rises of 1, 2, 3, and 5 ft. Simulations have also been performed for historical hurricane events including 1938, Carol (1954), Bob (1991), and Sandy (2012) and nuisance flooding events with return periods of 1, 3, 5, and 10 yr. Access to the flooding maps is via a web based, map viewer that seamlessly covers all coastal waters of the state at one meter resolution. The GIS structure of the map viewer allows overlays of additional relevant data sets (roads and highways, wastewater treatment facilities, schools, hospitals, emergency evacuation routes, etc.) as desired by the user. The simplified flooding maps are publically available and are now being implemented for state and community resilience planning and vulnerability assessment activities in response to climate change impacts.

  20. Infantile facioscapulohumeral muscular dystrophy revisited: Expansion of clinical phenotypes in patients with a very short EcoRI fragment.

    PubMed

    Chen, Tai-Heng; Lai, Yu-Hung; Lee, Pei-Lun; Hsu, Jong-Hau; Goto, Kanako; Hayashi, Yukiko K; Nishino, Ichizo; Lin, Chin-Wen; Shih, Hsiang-Hung; Huang, Chao-Ching; Liang, Wen-Chen; Wang, Wen-Fu; Jong, Yuh-Jyh

    2013-04-01

    Contrary to the classical form, infantile facioscapulohumeral muscular dystrophy (FSHD) usually denotes a severe phenotype and is frequently associated with extramuscular involvements. To elucidate the genotype-phenotype correlation in this severe subgroup, we identified a cohort of nine patients with infantile FSHD who also carried a very short (10-13kb) EcoRI fragment. Their current age ranged from 8 to 33 years and age of onset ranged from 0.4 to 5 years. One patient even manifested his first FSHD-related symptoms at as early as 5 months of age, including inability to smile, poor response to call, and infantile spasms. To date, four patients were wheelchair-bound and six patients had asymmetric weakness. Sensorineural hearing loss and abnormal fundoscopic findings were observed in eight and all of patients respectively. Three with the smallest EcoRI fragments (10-11kb, with normal length being 50-300kb) had mental retardation. Two of these had epilepsy. Cardiac arrhythmias were found in five patients. Restrictive ventilatory defects were observed in seven patients, with one progressing to chronic respiratory failure. Two had swallowing difficulties; one of these required gastrostomy. We identified several rarely reported phenotypes in infantile FSHD, including cardiac arrhythmia, respiratory insufficiency, and swallowing difficulties. There seems to be a correlation between the severity of phenotype and the very short EcoRI fragment in the chromosome 4q35 region. We conclude that the high frequency of multi-organ involvements in this severe FSHD variant suggests the need for an early and multidisciplinary intervention. PMID:23434070

  1. Photoinduced cross-linkage, in situ, of Escherichia coli 30S ribosomal proteins to 16S rRNA: identification of cross-linked proteins and relationships between reactivity and ribosome structure.

    PubMed

    Gorelic, L

    1976-08-10

    The kinetics of photoinduced cross-linkage of Escherichia coli 30S ribosomal proteins to the 16S-rRNA molecule in the intact Escherichia coli 30S ribosomal subunit was studied in this report. All of the 30S ribosomal proteins become cross-linked to the 16S rRNA before changes in the sedimentation characteristics of the 30S ribosomal subunit can be detected. The proteins exhibit different reactivities in the cross-linkage reaction. One group of proteins-S3, S7-S9, S11, S12, and S15-S19-is cross-linked to the 16S rRNA by single-hit kinetics, or by photoprocesses of nonunity but low multiplicities. A second group of proteins--S1, S2, S4-S6, S10, S13, S14, and S21--is cross-linked to the 16S rRNA by photoprocesses of a complex nature. A comparison of these data with other properties of the individual 30S ribosomal proteins related to ribosome structure indicated that most of the 30S ribosomal proteins cross-linked to the 16S rRNA by photoprocesses of low multiplicities had been classified rRNA-binding proteins by nonphotochemical methods, and most of the proteins cross-linked to the 16S rRNA by photoprocesses of large multiplicities had been classified as nonbinding proteins. There were certain exceptions to these correlations. Proteins S4 and S20, both RNA-binding proteins, become cross-linked to the 16S rRNA by photoprocessses of large multiplicities, and proteins S3, S11, S12, and S18, none of which have been classified RNA-binding proteins, exhibited low multiplicities in the cross-linkage reaction. All of these exceptions could be explained in terms of limitations inherent in the photochemical methods used in this study and in other types of methods that have been used to study RNA-protein interactions in the 30S ribosomal subunit. The data presented here also suggest that labile RNA-protein cross-links are present in the uv-irradiated 30S ribosomal subunits, and that neither peptide-bond cleavage nor photoinduced modification of the charged side-chain groups in

  2. High energy beam lines

    NASA Astrophysics Data System (ADS)

    Marchetto, M.; Laxdal, R. E.

    2014-01-01

    The ISAC post accelerator comprises an RFQ, DTL and SC-linac. The high energy beam lines connect the linear accelerators as well as deliver the accelerated beams to two different experimental areas. The medium energy beam transport (MEBT) line connects the RFQ to the DTL. The high energy beam transport (HEBT) line connects the DTL to the ISAC-I experimental stations (DRAGON, TUDA-I, GPS). The DTL to superconducting beam (DSB) transport line connects the ISAC-I and ISAC-II linacs. The superconducting energy beam transport (SEBT) line connects the SC linac to the ISAC-II experimental station (TUDA-II, HERACLES, TIGRESS, EMMA and GPS). All these lines have the function of transporting and matching the beams to the downstream sections by manipulating the transverse and longitudinal phase space. They also contain diagnostic devices to measure the beam properties.

  3. Electron Beam Freeform Fabrication

    NASA Video Gallery

    Electron Beam Freeform Fabrication (EBF3) is a process by which NASA hopes to build metal parts in zero gravity environments. It's a layer-additive process that uses an electron beam and a solid wi...

  4. Intra-beam scattering

    NASA Astrophysics Data System (ADS)

    Piwinski, A.

    Intra-beam scattering is analysed and the rise times or damping times of the beam dimensions are derived. The theoretical results are compared with experimental values obtained on the CERN AA and SPS machines.

  5. Laser-Beam Separator

    NASA Technical Reports Server (NTRS)

    Mcdermid, I. S.

    1984-01-01

    Train of prisms and optical stop separate fundamental beam of laser from second and higher order harmonics of beam produced in certain crystals and by stimulated Raman scattering in gases and liquids.

  6. Isotope-Shift Measurement of High-energy Highly Charged Ion Beams

    NASA Astrophysics Data System (ADS)

    Ozawa, S.; Ariga, T.; Inabe, N.; Kase, M.; Tanihata, I.; Wakasugi, M.; Yano, Y.

    2001-10-01

    Isotope-shift measurement by the laser spectroscopic method was aimed to apply for radioactive isotope beams up to uranium created by projectile fragmentation at RIKEN RI beam factory (T. Katayama, et al.,): Nucl. Phys., A626, 545c (1997).to make a systematic study of the mean square nuclear charge radii. The present work was started to verify the feasibility of the method. Projectile fragments are high-energy highly charged ions and weak currents. Therefore we designed ultralow-background photon-detection system (M. Wakasugi, et al.,): Nucl. Instr. and Meth., A419, 50 (1998).for collinear laser spectroscopy of such ion beams. To demonstrate isotope-shift measurement, we measured precisely the 1s2s ^3S_1-1s2p ^3P_0,1,2 transition energy of He-like ^12C ion accelerated up to 0.9 MeV/u and ^13C ion 0.6 MeV/u. For the precision measurement, the uncertainty coming from the ambiguity in the absolute ion beam velocity was suppressed by means of that the resonance energy was measured by two laser beams which propagate in parallel and anti-parallel directions to the ion beam. As the result, isotope shifts of these transitions were obtained with the accuracy of 10 %. The lower limit of the ion-beam intensity for the measurement is estimated to be 2000 ions/s.

  7. Electron beam focusing system

    SciTech Connect

    Dikansky, N.; Nagaitsev, S.; Parkhomchuk, V.

    1997-09-01

    The high energy electron cooling requires a very cold electron beam. Thus, the electron beam focusing system is very important for the performance of electron cooling. A system with and without longitudinal magnetic field is presented for discussion. Interaction of electron beam with the vacuum chamber as well as with the background ions and stored antiprotons can cause the coherent electron beam instabilities. Focusing system requirements needed to suppress these instabilities are presented.

  8. Beam Dynamics for ARIA

    SciTech Connect

    Ekdahl, Carl August Jr.

    2014-10-14

    Beam dynamics issues are assessed for a new linear induction electron accelerator being designed for flash radiography of large explosively driven hydrodynamic experiments. Special attention is paid to equilibrium beam transport, possible emittance growth, and beam stability. It is concluded that a radiographic quality beam will be produced possible if engineering standards and construction details are equivalent to those on the present radiography accelerators at Los Alamos.

  9. PARTICLE BEAM TRACKING CIRCUIT

    DOEpatents

    Anderson, O.A.

    1959-05-01

    >A particle-beam tracking and correcting circuit is described. Beam induction electrodes are placed on either side of the beam, and potentials induced by the beam are compared in a voltage comparator or discriminator. This comparison produces an error signal which modifies the fm curve at the voltage applied to the drift tube, thereby returning the orbit to the preferred position. The arrangement serves also to synchronize accelerating frequency and magnetic field growth. (T.R.H.)

  10. Confinement of bunched beams

    NASA Astrophysics Data System (ADS)

    Hess, Mark; Chen, Chiping

    2001-05-01

    The non-relativistic motion is analyzed for a highly bunched beam propagating through a perfectly conducting cylindrical pipe confined radially by a constant magnetic field parallel to the conductor axis, using a Green's function technique and Hamiltonian dynamics analysis. It is shown that for the confinement of beams with the same charge per unit length, the maximum value of the effective self-field parameter for a highly bunched beam is significantly lower than the Brillouin density limit for an unbunched beam.

  11. Population trends and flight behavior of the American burying beetle, Nicrophorus americanus (Coleoptera: Silphidae), on Block Island, RI

    USGS Publications Warehouse

    Raithel, C.J.; Ginsberg, H.S.; Prospero, M.L.

    2006-01-01

    The endangered American burying beetle, Nicrophorus americanus, was monitored on Block Island, RI, USA, from 1991-2003 using mark-recapture population estimates of adults collected in pitfall traps. Populations increased through time, especially after 1994 when a program was initiated that provided carrion for beetle production. Beetle captures increased with increasing temperature and dew point, and decreased with increasing wind speed. Short distance movement was not related to wind direction, while longer distance flights tended to be downwind. Although many individuals flew considerable distances along transects, most recaptures were in traps near the point of release. These behaviors probably have counterbalancing effects on population estimates.

  12. Study of beam-beam effects in eRHIC

    SciTech Connect

    Hao, Y.; Litvinenko, V.; Ptitsyn, V.

    2010-05-23

    Beam-beam effects in eRHIC have a number of unique features, which distinguish them from both hadron and lepton colliders. Due to beam-beam interaction, both electron and hadron beams would suffer quality degradation or beam loss from without proper treatments. Those features need novel study and dedicate countermeasures. We study the beam dynamics and resulting luminosity of the characteristics, including mismatch, disruption and pinch effects on electron beam, in additional to their consequences on the opposing beam as a wake field and other incoherent effects of hadron beam. We also carry out countermeasures to prevent beam quality degrade and coherent instability.

  13. Dual beam optical interferometer

    NASA Technical Reports Server (NTRS)

    Gutierrez, Roman C. (Inventor)

    2003-01-01

    A dual beam interferometer device is disclosed that enables moving an optics module in a direction, which changes the path lengths of two beams of light. The two beams reflect off a surface of an object and generate different speckle patterns detected by an element, such as a camera. The camera detects a characteristic of the surface.

  14. ATA beam director experiment

    SciTech Connect

    Lee, E.P.; Younger, F.C.; Cruz, G.E.; Nolting, E.

    1986-06-23

    This report describes beam director elements for an experiment at the Advanced Test Accelerator. The elements described include a vernier magnet for beam aiming, an achromat magnet, and an isolation system for the beam interface. These components are built at small scale for concept testing. (JDH)

  15. Cooling of stored beams

    SciTech Connect

    Mills, F.E.

    1986-10-15

    Beam cooling methods developed for the accumulation of antiprotons are being employed to assist in the performance of experiments in Nuclear and Particle Physics with ion beams stored in storage rings. The physics of beam cooling, and the ranges of utility of stochastic and electron cooling are discussed in this paper.

  16. Beam injection into RHIC

    SciTech Connect

    Fischer, W.; Hahn, H.; MacKay, W.W.; Satogata, T.; Tsoupas, N.; Zhang, W.

    1997-07-01

    During the RHIC sextant test in January 1997 beam was injected into a sixth of one of the rings for the first time. The authors describe the injection zone and its bottlenecks. They report on the commissioning of the injection system, on beam based measurements of the kickers and the application program to steer the beam.

  17. Electron beam device

    DOEpatents

    Beckner, E.H.; Clauser, M.J.

    1975-08-12

    This patent pertains to an electron beam device in which a hollow target is symmetrically irradiated by a high energy, pulsed electron beam about its periphery and wherein the outer portion of the target has a thickness slightly greater than required to absorb the electron beam pulse energy. (auth)

  18. Cleavage maps for human cytomegalovirus DNA strain AD169 for restriction endonucleases EcoRI, BglII, and HindIII.

    PubMed Central

    Spector, D H; Hock, L; Tamashiro, J C

    1982-01-01

    We have used cloned EcoRI fragments of the human CMV (HCMV) genome, strain AD169, to prepare restriction endonuclease maps of the DNA. Individual 32P-labeled cloned fragments were hybridized to Southern blots of HCMV DNA cleaved to completion with the restriction endonucleases BglII and HindIII and cleaved partially with EcoRI. By determining which EcoRI fragments hybridized to the same band on a Southern blot, we were able to establish linkage groups. This information coupled with the data derived from digestion of the cloned fragments with the enzymes BglII and HindIII (Tamashiro et al., J. Virol. 42:547-557, 1982) provided the basis for the construction of detailed maps for the enzymes EcoRI, BglII, and HindIII. We also identified the EcoRI fragments derived from the termini of this genome and mapped them with respect to the BglII and HindIII terminal fragments. From our mapping data, we conclude that the genome of HCMV is approximately 240 kilobases in length and is divided into long (198 kilobases) and short (42 kilobases) regions. Both regions consist of a unique sequence bounded by inverted repeats (11 to 12 kilobases for the long region and 2 to 3 kilobases for the short region). Furthermore, the long and short regions can invert relative to each other. Images PMID:6283173

  19. Computational modeling of the Fc αRI receptor binding in the Fc α domain of the human antibody IgA: Normal Modes Analysis (NMA) study

    NASA Astrophysics Data System (ADS)

    Jayasinghe, Manori; Posgai, Monica; Tonddast-Navaei, Sam; Ibrahim, George; Stan, George; Herr, Andrew; George Stan Group Collaboration; Herr's Group Team

    2014-03-01

    Fc αRI receptor binding in the Fc α domain of the antibody IgA triggers immune effector responses such as phagocytosis and antibody-dependent cell-mediated cytotoxicity in eukaryotic cells. Fc α is a dimer of heavy chains of the IgA antibody and each Fc α heavy chain which consisted of two immunoglobulin constant domains, CH2 and CH3, can bind one Fc αRI molecule at the CH2-CH3 interface forming a 2:1 stoichiometry. Experimental evidences confirmed that Fc αRI binding to the Fc α CH2-CH3 junction altered the kinetics of HAA lectin binding at the distant IgA1 hinge. Our focus in this research was to understand the conformational changes and the network of residues which co-ordinate the receptor binding dynamics of the Fc α dimer complex. Structure-based elastic network modeling was used to compute normal modes of distinct Fc α configurations. Asymmetric and un-liganded Fc α configurations were obtained from the high resolution crystal structure of Fc α-Fc αRI 2:1 symmetric complex of PDB ID 1OW0. Our findings confirmed that Fc αRI binding, either in asymmetric or symmetric complex with Fc α, propagated long-range conformational changes across the Fc domains, potentially also impacting the distant IgA1 hinge.

  20. BEAM CONTROL PROBE

    DOEpatents

    Chesterman, A.W.

    1959-03-17

    A probe is described for intercepting a desired portion of a beam of charged particles and for indicating the spatial disposition of the beam. The disclosed probe assembly includes a pair of pivotally mounted vanes moveable into a single plane with adjacent edges joining and a calibrated mechanical arrangement for pivoting the vancs apart. When the probe is disposed in the path of a charged particle beam, the vanes may be adjusted according to the beam current received in each vane to ascertain the dimension of the beam.

  1. Beams for kaon research

    SciTech Connect

    Pile, P.H.

    1985-01-01

    A proposed 1-2 GeV/c kaon beam line for BNL, designed to deliver momentum analyzed negative kaon beams with intensities above 10/sup 6/ per spill, is discussed. The beam intensity is expected to be about an order of magnitude greater than presently available and it is expected to be a clean beam with no more than 1:1 (..pi../sup -/,..mu../sup -/,e/sup -/)/K/sup -/. The beam line will allow a detailed investigation of strangeness -2 systems as well as continued investigations of strangeness -1 systems.

  2. Neutral beam monitoring

    DOEpatents

    Fink, Joel H.

    1981-08-18

    Method and apparatus for monitoring characteristics of a high energy neutral beam. A neutral beam is generated by passing accelerated ions through a walled cell containing a low energy neutral gas, such that charge exchange neutralizes the high energy ion beam. The neutral beam is monitored by detecting the current flowing through the cell wall produced by low energy ions which drift to the wall after the charge exchange. By segmenting the wall into radial and longitudinal segments various beam conditions are further identified.

  3. 8-Oxoguanine Affects DNA Backbone Conformation in the EcoRI Recognition Site and Inhibits Its Cleavage by the Enzyme

    PubMed Central

    Kiryutin, Alexey S.; Kasymov, Rustem D.; Petrova, Darya V.; Endutkin, Anton V.; Popov, Alexander V.; Yurkovskaya, Alexandra V.; Fedechkin, Stanislav O.; Brockerman, Jacob A.; Zharkov, Dmitry O.; Smirnov, Serge L.

    2016-01-01

    8-oxoguanine is one of the most abundant and impactful oxidative DNA lesions. However, the reasons underlying its effects, especially those not directly explained by the altered base pairing ability, are poorly understood. We report the effect of the lesion on the action of EcoRI, a widely used restriction endonuclease. Introduction of 8-oxoguanine inside, or adjacent to, the GAATTC recognition site embedded within the Drew—Dickerson dodecamer sequence notably reduced the EcoRI activity. Solution NMR revealed that 8-oxoguanine in the DNA duplex causes substantial alterations in the sugar—phosphate backbone conformation, inducing a BI→BII transition. Moreover, molecular dynamics of the complex suggested that 8-oxoguanine, although does not disrupt the sequence-specific contacts formed by the enzyme with DNA, shifts the distribution of BI/BII backbone conformers. Based on our data, we propose that the disruption of enzymatic cleavage can be linked with the altered backbone conformation and dynamics in the free oxidized DNA substrate and, possibly, at the protein—DNA interface. PMID:27749894

  4. BIPM comparison BIPM.RI(II)-K1.Th-228 of activity measurements of the radionuclide 228Th

    NASA Astrophysics Data System (ADS)

    Michotte, C.; Ratel, G.; Courte, S.; Lucas, L.; Kossert, K.; Nähle, O.; Ott, O.

    2016-01-01

    Since 1986, two national metrology institutes (NMI) have submitted two samples of known activity of 228Th to the International Reference System (SIR) for activity comparison at the Bureau International des Poids et Mesures (BIPM), with comparison identifier BIPM.RI(II)-K1.Th-228. The values of the activity submitted were about 300 kBq and 2 MBq. A key comparison reference value (KCRV) has been evaluated for the first time for 228Th. There is only one result remaining in the BIPM.RI(II)-K1.Th-228 comparison, the 1986 NIST result being outdated. The degrees of equivalence between each equivalent activity measured in the SIR and the KCRV have been calculated and the results are given in the form of a table. A graphical presentation is also given. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  5. Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform

    SciTech Connect

    Liu, Yanli; Barua, Dipak; Liu, Peng; Wilson, Bridget S.; Oliver, Janet M.; Hlavacek, William S.; Singh, Anup K.

    2013-03-27

    Heterogeneity in responses of cells to a stimulus, such as a pathogen or allergen, can potentially play an important role in deciding the fate of the responding cell population and the overall systemic response. Measuring heterogeneous responses requires tools capable of interrogating individual cells. Cell signaling studies commonly do not have single-cell resolution because of the limitations of techniques used such as Westerns, ELISAs, mass spectrometry, and DNA microarrays. Microfluidics devices are increasingly being used to overcome these limitations. In this paper, we report on a microfluidic platform for cell signaling analysis that combines two orthogonal single-cell measurement technologies: on-chip flow cytometry and optical imaging. The device seamlessly integrates cell culture, stimulation, and preparation with downstream measurements permitting hands-free, automated analysis to minimize experimental variability. The platform was used to interrogate IgE receptor (FcεRI) signaling, which is responsible for triggering allergic reactions, in RBL-2H3 cells. Following on-chip crosslinking of IgE-FcεRI complexes by multivalent antigen, we monitored signaling events including protein phosphorylation, calcium mobilization and the release of inflammatory mediators. The results demonstrate the ability of our platform to produce quantitative measurements on a cell-by-cell basis from just a few hundred cells. Finally, model-based analysis of the Syk phosphorylation data suggests that heterogeneity in Syk phosphorylation can be attributed to protein copy number variations, with the level of Syk phosphorylation being particularly sensitive to the copy number of Lyn.

  6. Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform

    PubMed Central

    Liu, Yanli; Barua, Dipak; Liu, Peng; Wilson, Bridget S.; Oliver, Janet M.; Hlavacek, William S.; Singh, Anup K.

    2013-01-01

    Heterogeneity in responses of cells to a stimulus, such as a pathogen or allergen, can potentially play an important role in deciding the fate of the responding cell population and the overall systemic response. Measuring heterogeneous responses requires tools capable of interrogating individual cells. Cell signaling studies commonly do not have single-cell resolution because of the limitations of techniques used such as Westerns, ELISAs, mass spectrometry, and DNA microarrays. Microfluidics devices are increasingly being used to overcome these limitations. Here, we report on a microfluidic platform for cell signaling analysis that combines two orthogonal single-cell measurement technologies: on-chip flow cytometry and optical imaging. The device seamlessly integrates cell culture, stimulation, and preparation with downstream measurements permitting hands-free, automated analysis to minimize experimental variability. The platform was used to interrogate IgE receptor (FcεRI) signaling, which is responsible for triggering allergic reactions, in RBL-2H3 cells. Following on-chip crosslinking of IgE-FcεRI complexes by multivalent antigen, we monitored signaling events including protein phosphorylation, calcium mobilization and the release of inflammatory mediators. The results demonstrate the ability of our platform to produce quantitative measurements on a cell-by-cell basis from just a few hundred cells. Model-based analysis of the Syk phosphorylation data suggests that heterogeneity in Syk phosphorylation can be attributed to protein copy number variations, with the level of Syk phosphorylation being particularly sensitive to the copy number of Lyn. PMID:23544131

  7. DNA Concentration-Dependent Dissociation of EcoRI: Direct Transfer or Reaction during Hopping

    PubMed Central

    Sidorova, Nina Y.; Scott, Thomas; Rau, Donald C.

    2013-01-01

    Direct transfer of proteins between DNA helices is a recognized important feature of the recognition site search process. Direct transfer is characterized by a dissociation rate that depends on total DNA concentration. This is taken as evidence for the formation of an intermediate DNA-protein-DNA ternary complex. We find that the dissociation rate of EcoRI-DNA-specific complexes at 80 mM NaCl depends on the concentration of competitor oligonucleotide suggesting that direct transfer contributes to EcoRI dissociation. This dependence on competitor DNA concentration is not seen at 180 mM salt. A careful examination of the salt concentration dependence of the dissociation rate, however, shows that the predictions for the formation of a ternary complex are not observed experimentally. The findings can be rationalized by considering that just after dissociating from a DNA fragment the protein remains in close proximity to that fragment, can reassociate with it, and diffuse back to the recognition site rather than bind to an oligonucleotide in solution, a hopping excursion. The probability that a protein will bind to an oligonucleotide during a hop can be approximately calculated and shown to explain the data. A dependence of the dissociation rate of a DNA-protein complex on competitor DNA concentration does not necessarily mean direct transfer. PMID:23528089

  8. A Lanthipeptide-like N-Terminal Leader Region Guides Peptide Epimerization by Radical SAM Epimerases: Implications for RiPP Evolution.

    PubMed

    Fuchs, Sebastian W; Lackner, Gerald; Morinaka, Brandon I; Morishita, Yohei; Asai, Teigo; Riniker, Sereina; Piel, Jörn

    2016-09-26

    Ribosomally synthesized and posttranslationally modified peptide natural products (RiPPs) exhibit diverse structures and bioactivities and are classified into distinct biosynthetic families. A recently reported family is the proteusins, with the prototype members polytheonamides being generated by almost 50 maturation steps, including introduction of d-residues at multiple positions by an unusual radical SAM epimerase. A region in the protein-like N-terminal leader of proteusin precursors is identified that is crucial for epimerization. It resembles a precursor motif previously shown to mediate interaction in thioether bridge-formation in class I lanthipeptide biosynthesis. Beyond this region, similarities were identified between proteusin and further RiPP families, including class I lanthipeptides. The data suggest that common leader features guide distinct maturation types and that nitrile hydratase-like enzymes are ancestors of several RiPP classes.

  9. Structural insights into the interaction of human IgG1 with FcγRI: no direct role of glycans in binding

    PubMed Central

    Oganesyan, Vaheh; Mazor, Yariv; Yang, Chunning; Cook, Kimberly E.; Woods, Robert M.; Ferguson, Andrew; Bowen, Michael A.; Martin, Tom; Zhu, Jie; Wu, Herren; Dall’Acqua, William F.

    2015-01-01

    The three-dimensional structure of a human IgG1 Fc fragment bound to wild-type human FcγRI is reported. The structure of the corresponding complex was solved at a resolution of 2.4 Å using molecular replacement; this is the highest resolution achieved for an unmutated FcγRI molecule. This study highlights the critical structural and functional role played by the second extracellular subdomain of FcγRI. It also explains the long-known major energetic contribution of the Fc ‘LLGG’ motif at positions 234–237, and particularly of Leu235, via a ‘lock-and-key’ mechanism. Finally, a previously held belief is corrected and a differing view is offered on the recently proposed direct role of Fc carbohydrates in the corresponding interaction. Structural evidence is provided that such glycan-related effects are strictly indirect. PMID:26527150

  10. N-Formyl-Methionyl-Leucyl-Phenylalanine Inhibits both Gamma Interferon- and Interleukin-10-Induced Expression of FcγRI on Human Monocytes

    PubMed Central

    Beigier-Bompadre, Macarena; Barrionuevo, Paula; Alves-Rosa, Fernanda; Rubel, Carolina J.; Palermo, Marina S.; Isturiz, Martín A.

    2001-01-01

    Three different classes of receptors for the Fc portion of immunoglobulin G (FcγRs), FcγRI, FcγRII, and FcγRIII, have been identified on human leukocytes. One of them, FcγRI, is a high-affinity receptor capable of induction of functions that include phagocytosis, respiratory burst, antibody-dependent cell-mediated cytotoxicity (ADCC), and secretion of cytokines. This receptor is expressed on mononuclear phagocytes, and this expression is regulated by cytokines and hormones such as gamma interferon (IFN-γ), IFN-β, interleukin-10 (IL-10), and glucocorticoids. We have recently demonstrated that the chemotactic peptide N-formyl-methionyl-leucyl-phenylalanine (FMLP) is capable of inducing a time-dependent downregulation of both FcγRIIIB and FcγRII in human neutrophils, altering FcγR-dependent functions. Considering the biological relevance of the regulation of FcγRI, we investigated the effect of FMLP on the overexpression of FcγRI induced by both IFN-γ and IL-10 on human monocytes. We demonstrate that FMLP significantly abrogated IFN-γ- and IL-10-induced FcγRI expression, although its basal level of expression was not altered. However, other IFN-γ-mediated effects such as the overexpression of the major histocompatibility complex class II antigens and the enhancement of lipopolysaccharide-induced secretion of tumor necrosis factor alpha were not affected by FMLP treatment. The formyl peptide completely inhibited the IFN-γ- and IL-10-induced enhancement of ADCC and phagocytosis carried out by adherent cells. The inhibitory effect of FMLP on FcγRI upregulation could exert an important regulatory effect during the evolution of bacterial infections. PMID:11238229

  11. Particle beam injection system

    DOEpatents

    Jassby, Daniel L.; Kulsrud, Russell M.

    1977-01-01

    This invention provides a poloidal divertor for stacking counterstreaming ion beams to provide high intensity colliding beams. To this end, method and apparatus are provided that inject high energy, high velocity, ordered, atomic deuterium and tritium beams into a lower energy, toroidal, thermal equilibrium, neutral, target plasma column that is magnetically confined along an endless magnetic axis in a strong restoring force magnetic field having helical field lines to produce counterstreaming deuteron and triton beams that are received bent, stacked and transported along the endless axis, while a poloidal divertor removes thermal ions and electrons all along the axis to increase the density of the counterstreaming ion beams and the reaction products resulting therefrom. By balancing the stacking and removal, colliding, strong focused particle beams, reaction products and reactions are produced that convert one form of energy into another form of energy.

  12. Photonic crystal beam splitters.

    PubMed

    Chen, Chii-Chang; Chien, Hung-Da; Luan, Pi-Gang

    2004-11-20

    This work studies two-dimensional photonic crystal beam splitters with two input ports and two output ports. The beam splitter structure consists of two orthogonally crossed line defects and one point defect in square-lattice photonic crystals. The point defect is positioned at the intersection of the line defects to divide the input power into output ports. If the position and the size of the point defect are varied, the power of two output ports can be identical. The beam splitters can be used in photonic crystal Mach-Zehnder interferometers or switches. The simulation results show that a large bandwidth of the extinction ratio larger than 20 dB can be obtained while two beams are interfered in the beam splitters. This enables photonic crystal beam splitters to be used in fiber optic communication systems.

  13. Craft Stick Beams

    NASA Technical Reports Server (NTRS)

    Karplus, Alan K.

    1996-01-01

    The objective of this exercise is to provide a phenomenological 'hands-on' experience that shows how geometry can affect the load carrying capacity of a material used in construction, how different materials have different failure characteristics, and how construction affects the performance of a composite material. This will be accomplished by building beams of a single material and composite beams of a mixture of materials (popsicle sticks, fiberboard sheets, and tongue depressors); testing these layered beams to determine how and where they fail; and based on the failure analysis, designing a layered beam that will fail in a predicted manner. The students will learn the effects of lamination, adhesion, and geometry in layered beam construction on beam strength and failure location.

  14. KEKB beam instrumentation systems

    NASA Astrophysics Data System (ADS)

    Arinaga, M.; Flanagan, J.; Hiramatsu, S.; Ieiri, T.; Ikeda, H.; Ishii, H.; Kikutani, E.; Mimashi, T.; Mitsuhashi, T.; Mizuno, H.; Mori, K.; Tejima, M.; Tobiyama, M.

    2003-02-01

    For the stable high-luminosity operation and luminosity increase, the electron and positron storage rings of the KEK B-Factory (KEKB) is equipped with various beam instrumentations, which have been working well since the start of the commissioning in December, 1998. Details and performance of the beam-position monitor system based on the spectrum analysis using DSPs, the turn-by-turn BPM with four-dimensional function available for measurements of the individual bunch position, phase and intensity, the parametric beam-DCCTs designed so as to avoid the magnetic-core-selection problems for the parametric flux modulation, the bunch-by-bunch feedback system indispensable to suppress the strong multibunch instabilities in KEKB, the various optical beam diagnostic systems, such as synchrotron radiation interferometers for precise beam-size measurement, the tune meters, the bunch length monitors and the beam-loss monitors are described. Delicate machine tuning of KEKB is strongly supported by these instrumentations.

  15. Hyperon beam physics

    SciTech Connect

    Cooper, P.S.

    1996-03-01

    This report reviews the present status and recent results in hyperon physics concentrating on results from high energy hyperon beam experiments performed at Fermilab over the past several years. The report focuses on hyperon production polarization, precision hyperon magnetic moment measurements and radiative decay studies. Modern charged hyperon beam experiments are characterized by {approx}100m long apparatus and hyperon beams with {gamma}{sub Y}{approx}100 and hyperon fluxes in the 1-100 kHz range.

  16. Perturbation of DNA hairpins containing the EcoRI recognition site by hairpin loops of varying size and composition: physical (NMR and UV) and enzymatic (EcoRI) studies.

    PubMed Central

    Germann, M W; Kalisch, B W; Lundberg, P; Vogel, H J; van de Sande, J H

    1990-01-01

    We have investigated loop-induced structural perturbation of the stem structure in hairpins d(GAATTCXnGAATTC) (X = A, T and n = 3, 4, 5 and 6) that contain an EcoRI restriction site in close proximity to the hairpin loop. Oligonucleotides containing either a T3 or a A3 loop were not hydrolyzed by the restriction enzyme and also showed only weak binding to EcoRI in the absence of the cofactor Mg2+. In contrast, hairpins with larger loops are hydrolyzed by the enzyme at the scission site next to the loop although the substrate with a A4 loop is significantly more resistant than the oligonucleotide containing a T4 loop. The hairpin structures with 3 loop residues were found to be thermally most stable while larger hairpin loops resulted in structures with lower melting temperatures. The T-loop hairpins are thermally more stable than the hairpins containing the same number of A residues in the loop. As judged from proton NMR spectroscopy and the thermodynamic data, the base pair closest to the hairpin loop did form in all cases studied. The hairpin loops did, however, affect the conformation of the stem structure of the hairpins. From 31P and 1H NMR spectroscopy we conclude that the perturbation of the stem structure is stronger for smaller hairpin loops and that the extent of the perturbation is limited to 2-3 base pairs for hairpins with T3 or A4 loops. Our results demonstrate that hairpin loops modulate the conformation of the stem residues close to the loop and that this in turn reduces the substrate activity for DNA sequence specific proteins. Images PMID:2326190

  17. Resolving Two Beams in Beam Splitters with a Beam Position Monitor

    NASA Astrophysics Data System (ADS)

    Kurennoy, Sergey

    2002-04-01

    The beam transport system for the Advanced Hydrotest Facility (AHF) anticipates multiple beam splitters. Monitoring two transversely separated beams in a common beam pipe in the splitter sections imposes certain requirements on beam diagnostics for these sections. We explore a two-beam system in a generic beam monitor and study the feasibility of resolving the transverse positions of the two beams with one diagnostics device. Effects of unequal beam currents and of finite transverse sizes of the beams are explored analytically for both the ultra relativistic case and the long-wavelength limit.

  18. (Pulsed electron beam precharger)

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1990-01-01

    This report discusses the following topics on electron beam guns: Precharger Modification; Installation of Charge vs. Radius Apparatus; High Concentration Aerosol Generation; and Data Acquisition and Analysis System.

  19. Power beaming options

    NASA Technical Reports Server (NTRS)

    Rather, John D. G.

    1989-01-01

    Some large scale power beaming applications are proposed for the purpose of stimulating research. The first proposal is for a combination of large phased arrays on the ground near power stations and passive reflectors in geostationary orbit. The systems would beam excess electrical power in microwave form to areas in need of electrical power. Another proposal is to build solar arrays in deserts and beam the energy around the world. Another proposal is to use lasers to beam energy from earth to orbiting spacecraft.

  20. ALEX neutral beam probe

    SciTech Connect

    Pourrezaei, K.

    1982-01-01

    A neutral beam probe capable of measuring plasma space potential in a fully 3-dimensional magnetic field geometry has been developed. This neutral beam was successfully used to measure an arc target plasma contained within the ALEX baseball magnetic coil. A computer simulation of the experiment was performed to refine the experimental design and to develop a numerical model for scaling the ALEX neutral beam probe to other cases of fully 3-dimensional magnetic field. Based on this scaling a 30 to 50 keV neutral cesium beam probe capable of measuring space potential in the thermal barrier region of TMX Upgrade was designed.

  1. Broad beam ion implanter

    DOEpatents

    Leung, K.N.

    1996-10-08

    An ion implantation device for creating a large diameter, homogeneous, ion beam is described, as well as a method for creating same, wherein the device is characterized by extraction of a diverging ion beam and its conversion by ion beam optics to an essentially parallel ion beam. The device comprises a plasma or ion source, an anode and exit aperture, an extraction electrode, a divergence-limiting electrode and an acceleration electrode, as well as the means for connecting a voltage supply to the electrodes. 6 figs.

  2. Broad beam ion implanter

    DOEpatents

    Leung, Ka-Ngo

    1996-01-01

    An ion implantation device for creating a large diameter, homogeneous, ion beam is described, as well as a method for creating same, wherein the device is characterized by extraction of a diverging ion beam and its conversion by ion beam optics to an essentially parallel ion beam. The device comprises a plasma or ion source, an anode and exit aperture, an extraction electrode, a divergence-limiting electrode and an acceleration electrode, as well as the means for connecting a voltage supply to the electrodes.

  3. Magnetic beam position monitor

    SciTech Connect

    Varfolomeev, A.A.; Ivanchenkov, S.N.; Khlebnikov, A.S.

    1995-12-31

    Many nondestructive beam position monitors are known. However, these devices can not be used for DC particle beam diagnostics. We investigated a method of beam diagnostics applicable for the operative control of DC high power e-beam inside closed waveguide. A design of the detector for determination of{open_quote} center of mass {close_quote} position of DC particle beam was developed. It was shown that the monitor can be used as a nondestructive method for the beam position control in resonators. Magnetic field of the particle beam outside a resonator is used. The detector consists of the steel yokes and magnetic field sensors. The sensors measure magnetic fluxes in the steel yokes fixed outside the resonator. When the particle beam changes its position, these magnetic fluxes also change. Beam displacement sensitivity of the monitor depends on the steel yoke dimensions. The detector sensitivity is equal to 1 Gauss/mm for the conditions adequate to the FOM-FEM project.

  4. Long-Range Beam-Beam Compensation in RHIC

    SciTech Connect

    Kim, Hyung Jin; Sen, Tanaji; Fischer, Wolfram; /Brookhaven

    2010-05-01

    In order to avoid the effects of long-range beam-beam interactions which produce beam blow-up and deteriorate beam life time, a compensation scheme with current carrying wires has been proposed. Two long-range beam-beam compensators were installed in RHIC rings in 2006. The effects of the compensators have been experimentally investigated. An indication was observed that the compensators are beneficial to beam life time in measurements performed in RHIC during 2009. In this paper, we report the effects of wire compensator on beam loss and emittance for proton-proton beams at collision energy.

  5. Computational challenges for beam-beam simulation for RHIC

    SciTech Connect

    Luo, Y.; Fischer, W.

    2010-10-01

    In this article we will review the computational challenges in the beam-beam simulation for the polarized proton run of the Relativistic Heavy Ion Collider (RHIC). The difficulties in our multi-particle and million turn tracking to calculate the proton beam lifetime and proton beam emittance growth due to head-on beam-beam interaction and head-on beam-beam compensation are presented and discussed. Solutions to obtain meaningful physics results from these trackings are proposed and tested. In the end we will present the progress in the benchmarking of the RHIC operational proton beam lifetime.

  6. Malachite green bioremoval by a newly isolated strain Citrobacter sedlakii RI11; enhancement of the treatment by biosurfactant addition.

    PubMed

    Mnif, Inès; Fendri, Raouia; Ghribi, Dhouha

    2015-01-01

    Citrobacter sedlackii RI11, isolated from acclimated textile effluent after selective enrichment on synthetic dyes, was assessed for malachite green (MG) biotreatment potency. Results indicate that this bacterium has potential for use in effective treatment of MG contaminated wastewaters under shaking conditions at neutral and alkaline pH value, characteristic of typical textile effluents. Also, the newly isolated strain can tolerate higher doses of dye and decolorize up to 1,000 mg/l of dye. When used as microbial surfactant to enhance MG biodecolorization, Bacillus subtilis SPB1-derived lipopeptide accelerated the decolorization rate and maximized the decolorization efficiency at an optimal concentration of biosurfactant of about 0.075%. Studies ensured that MG removal by this strain could be due to biodegradation and/or adsorption. Results on germination potencies of different seeds using the treated dyes under different conditions favor the use of SPB1 biosurfactant for the treatment of MG. PMID:26465297

  7. Single-particle tracking of immunoglobulin E receptors (FcεRI) in micron-sized clusters and receptor patches.

    PubMed

    Spendier, Kathrin; Lidke, Keith A; Lidke, Diane S; Thomas, James L

    2012-02-17

    When mast cells contact a monovalent antigen-bearing fluid lipid bilayer, IgE-loaded FcεRI receptors aggregate at contact points and trigger degranulation and the release of immune activators. We used two-color total internal reflection fluorescence microscopy and single-particle tracking to show that most fluorescently labeled receptor complexes diffuse freely within these micron-size clusters, with a diffusion coefficient comparable to free receptors in resting cells. At later times, when the small clusters coalesce to form larger patches, receptors diffuse even more rapidly. In all cases, Monte Carlo diffusion simulations ensured that the tracking results were free of bias, and distinguished biological from statistical variation. These results show the diversity in receptor mobility in mast cells, demonstrating at least three distinct states of receptor diffusivity.

  8. Tespa1 negatively regulates FcεRI-mediated signaling and the mast cell–mediated allergic response

    PubMed Central

    Zheng, Mingzhu; Qiu, Yuanjun; Guo, Chuansheng; Ji, Jian; Lei, Lei; Zhang, Xue; Liang, Jingjing; Lou, Jun; Huang, Wei; Dong, Bowen; Wu, Songquan; Wang, Jianli; Ke, Yuehai; Cao, Xuetao; Zhou, Yi Ting

    2014-01-01

    Antigen-mediated cross-linking of IgE on mast cells triggers a signaling cascade that results in their degranulation and proinflammatory cytokine production, which are key effectors in allergic reactions. We show that the activation of mast cells is negatively regulated by the newly identified adaptor protein Tespa1. Loss of Tespa1 in mouse mast cells led to hyper-responsiveness to stimulation via FcεRI. Mice lacking Tespa1 also displayed increased sensitivity to IgE-mediated allergic responses. The dysregulated signaling in KO mast cells was associated with increased activation of Grb2-PLC-γ1-SLP-76 signaling within the LAT1 (linker for activation of T cells family, member 1) signalosome versus the LAT2 signalosome. Collectively, these findings show that Tespa1 orchestrates mast cell activation by tuning the balance of LAT1 and LAT2 signalosome assembly. PMID:25422497

  9. Malachite green bioremoval by a newly isolated strain Citrobacter sedlakii RI11; enhancement of the treatment by biosurfactant addition.

    PubMed

    Mnif, Inès; Fendri, Raouia; Ghribi, Dhouha

    2015-01-01

    Citrobacter sedlackii RI11, isolated from acclimated textile effluent after selective enrichment on synthetic dyes, was assessed for malachite green (MG) biotreatment potency. Results indicate that this bacterium has potential for use in effective treatment of MG contaminated wastewaters under shaking conditions at neutral and alkaline pH value, characteristic of typical textile effluents. Also, the newly isolated strain can tolerate higher doses of dye and decolorize up to 1,000 mg/l of dye. When used as microbial surfactant to enhance MG biodecolorization, Bacillus subtilis SPB1-derived lipopeptide accelerated the decolorization rate and maximized the decolorization efficiency at an optimal concentration of biosurfactant of about 0.075%. Studies ensured that MG removal by this strain could be due to biodegradation and/or adsorption. Results on germination potencies of different seeds using the treated dyes under different conditions favor the use of SPB1 biosurfactant for the treatment of MG.

  10. ANTIOXIDANT PROPERTIES OF METHANOLIC EXTRACTS FROM THE SHOOTS AND ROOTS OF pRi-TRANSFORMED PLANTS OF REHMANNIA GLUTINOSA LIBOSCH.

    PubMed

    Piatczak, Ewelina; Dfbska, Marta; Kontek, Bogdan; Olas, Beata; Wysokinskai, Halina

    2016-01-01

    The antioxidant activity of methanolic extracts derived from shoots (HR-shoots) and roots (HR-roots) of pRi-transformed Rehmannia glutinosa plants were determined. The activity was indicated by the ability of the plant extracts to inhibit superoxide anion (O2(-·)) generation and thiobarbituric acid reactive substances (TBARS) production in resting blood platelets and platelets activated by thrombin. The strongest activity was exhibited by the HR-shoot extract (50 μg/mL). The present study also examines the antioxidant properties of the plant extracts against human plasma lipid peroxidation induced by strong biological oxidants: hydrogen peroxide (H2O2) and H2O2/Fe. The study shows that extracts from transformed R. glutinosa plants may be a promising source of natural antioxidants, which would be valuable in various cardiovascular diseases. The extracts may also protect lipids against oxidative modifications.

  11. ANTIOXIDANT PROPERTIES OF METHANOLIC EXTRACTS FROM THE SHOOTS AND ROOTS OF pRi-TRANSFORMED PLANTS OF REHMANNIA GLUTINOSA LIBOSCH.

    PubMed

    Piatczak, Ewelina; Dfbska, Marta; Kontek, Bogdan; Olas, Beata; Wysokinskai, Halina

    2016-01-01

    The antioxidant activity of methanolic extracts derived from shoots (HR-shoots) and roots (HR-roots) of pRi-transformed Rehmannia glutinosa plants were determined. The activity was indicated by the ability of the plant extracts to inhibit superoxide anion (O2(-·)) generation and thiobarbituric acid reactive substances (TBARS) production in resting blood platelets and platelets activated by thrombin. The strongest activity was exhibited by the HR-shoot extract (50 μg/mL). The present study also examines the antioxidant properties of the plant extracts against human plasma lipid peroxidation induced by strong biological oxidants: hydrogen peroxide (H2O2) and H2O2/Fe. The study shows that extracts from transformed R. glutinosa plants may be a promising source of natural antioxidants, which would be valuable in various cardiovascular diseases. The extracts may also protect lipids against oxidative modifications. PMID:27180436

  12. Single-Cell Measurements of IgE-Mediated FcεRI Signaling Using an Integrated Microfluidic Platform

    DOE PAGESBeta

    Liu, Yanli; Barua, Dipak; Liu, Peng; Wilson, Bridget S.; Oliver, Janet M.; Hlavacek, William S.; Singh, Anup K.

    2013-03-27

    Heterogeneity in responses of cells to a stimulus, such as a pathogen or allergen, can potentially play an important role in deciding the fate of the responding cell population and the overall systemic response. Measuring heterogeneous responses requires tools capable of interrogating individual cells. Cell signaling studies commonly do not have single-cell resolution because of the limitations of techniques used such as Westerns, ELISAs, mass spectrometry, and DNA microarrays. Microfluidics devices are increasingly being used to overcome these limitations. In this paper, we report on a microfluidic platform for cell signaling analysis that combines two orthogonal single-cell measurement technologies: on-chipmore » flow cytometry and optical imaging. The device seamlessly integrates cell culture, stimulation, and preparation with downstream measurements permitting hands-free, automated analysis to minimize experimental variability. The platform was used to interrogate IgE receptor (FcεRI) signaling, which is responsible for triggering allergic reactions, in RBL-2H3 cells. Following on-chip crosslinking of IgE-FcεRI complexes by multivalent antigen, we monitored signaling events including protein phosphorylation, calcium mobilization and the release of inflammatory mediators. The results demonstrate the ability of our platform to produce quantitative measurements on a cell-by-cell basis from just a few hundred cells. Finally, model-based analysis of the Syk phosphorylation data suggests that heterogeneity in Syk phosphorylation can be attributed to protein copy number variations, with the level of Syk phosphorylation being particularly sensitive to the copy number of Lyn.« less

  13. Stabilization of the restriction enzyme EcoRI dried with trehalose and other selected glass-forming solutes.

    PubMed

    Rossi, S; Buera, M P; Moreno, S; Chirife, J

    1997-01-01

    The stabilization of the restriction enzyme EcoRI by its incorporation into aqueous glass-forming carbohydrate or polymer solutions, followed by vacuum-drying to low moisture, has been studied. Glass-forming solutes included trehalose, sucrose, lactose, maltose, raffinose, maltodextrin DE 10, and poly(vinylpyrrolidone) (molecular weight 40,000, PVP). Among the solutes examined, trehalose and sucrose protected the enzyme most effectively during storage at 37 and 45 degrees C. The restriction enzyme dried with trehalose or sucrose maintained its activity without detectable loss for at least 20 days at 37 degrees C and 12 days at 45 degrees C. In contrast, the activity of the enzyme dried with maltodextrin or PVP was reduced during vacuum desiccation and also it decreased remarkably during storage at the same temperatures. Stored (37/45 degrees C) vacuum-dried trehalose and sucrose systems were either a dense paste or a very viscous syrup, and this indicated that they were not glassy. Moreover, no relationship was found between the glass transition temperatures (Tg) of the pure added solute and enzyme protection during storage, since, e.g., sucrose which has significantly lower Tg values protected the enzyme much better than either maltose, lactose, maltodextrin, or PVP. The trisaccharide raffinose offered good protection of enzyme activity, and its role as a novel excipient matrix for labile enzyme stabilization deserves further investigation. The stability of enzyme EcoRI was rapidly lost when the vacuum-dried trehalose and sucrose systems were humidified to 58% relative humidity and stored at 45 degrees C, and this was attributed to disaccharide crystallization.

  14. The European Sea Level Service (ESEAS) and the ESEAS Research Infrastructure (ESEAS-RI) project: An overview

    NASA Astrophysics Data System (ADS)

    Plag, H.-P.

    2003-04-01

    This abstract describes work carried out by the ESEAS and ESEAS-RI teams (to be found at http://www.eseas.org). The ESEAS started its work in June 2001 and has the major objective to provide sea-level and sea-level related information for the European waters to scientific and non-scientific users both from inside and outside Europe. The ESEAS aims to achieve this goal in cooperation with other relevant orgaanisations such as the PSMSL, EuroGOOS, GLOSS, EUREF and IGS. The ESEAS strives to guarantee and co-ordinate the long-term monitoring activities and data exchange along the entire European coastline. This includes, among others, tasks like setting up standards for observations and data processing, quality control of the large European database of hourly sea level data, upgrading of the ESEAS Observing Sites, collocation of tide gauges with CGPS, and provision of derived products such as secular trends and estimates of extremes. The EU-funded ESEAS-RI project started on 1 November 2002 with 25 institutions from 17 countries included. The project will run over three years and provides substantial resources for improving the observational network as well as the tools for exploitation of the data. In particular, Work Package (WP) 1 (Quality Control of Sea Level Observations) will make available a quality-controlled data set of hourly tide gauge from most ESEAS Observing sites. WP2 (Absolute sea level variations) will concentrate on the determination of vertical crustal motion at the ESEAS Observing sites. WP3 (Decadal to inter-decadal sea level variations) will produce as main result an empirical model of the sea level variations in the Eurepean Seas for the last hundred years. Finally, in the frame of WP4 (Improving the sea level observing system), a number of ESEAS Observing Sites will be upgraded and/or augmented with CGPS.

  15. A prototype of Virtual Observatory access for planetary data in the framework of Europlanet-RI/IDIS

    NASA Astrophysics Data System (ADS)

    Gangloff, M.; Cecconi, B.; Bourrel, N.; Jacquey, C.; Le Sidaner, P.; Berthier, J.; André, N.; Pallier, E.; Erard, S.; Aboudarham, J.; Chanteur, G. M.; Capria, M. T.; Khodachenko, M.; Manaud, N.; Schmidt, W.; Schmitt, B.; Topf, F.; Trautan, F.; Sarkissian, A.

    2011-12-01

    Europlanet RI is a four-year project supported by the European Union under the Seventh Framework Programme. Launched in January 2009, it is an Integrated Infrastructure Initiative, ie. A combination of Networking Activities, Transnational Access Activities and Joint Research Activities. The Networking Activities aim at further fostering a culture of cooperation in the field of Planetary Sciences. The objective of the Transnational Access Activities is to provide transnational access to a range of laboratory and field site facilities tailored to the needs of planetary research and on-line access to the available planetary science data, information and software tools, through the IDIS e-service. The overall aim of the Joint Research Activities (JRA) is to improve the services provided by the ensemble of Transnational Access Activities. In EuroPlaNet-RI, JRA4 must prepare essential tools for IDIS (Integrated and Distributed Information Service) allowing the planetary science community to interrogate some selected data centres, access and process data and visualize the results. This is the first step towards a Planetary Virtual Observatory. The first requirement for different data centres to be able to operate together collectively is adequate standardization. In particular a common description of data and services is essential. This is why the major part of JRA4/Task2 activity is focussing on data models, associated dictionnaries, and protocols to exchange queries. A specific data model is being developed for IDIS, associated with the PDAP protocol, a standard defined by the IPDA (International Planetary Data Alliance) The scope of this prototype is to demonstrate the capabilities of the IDIS Data Model, and the PDAP protocol to search and retrieve data in the wide topical planetology context.

  16. Implementation of depolarization due to beam-beam effects in the beam-beam interaction simulation tool GUINEA-PIG++

    NASA Astrophysics Data System (ADS)

    Rimbault, C.; Le Meur, G.; Blampuy, F.; Bambade, P.; Schulte, D.

    2009-12-01

    Depolarization is a new feature in the beam-beam simulation tool GUINEA-PIG++ (GP++). The results of this simulation are studied and compared with another beam-beam simulation tool, CAIN, considering different beam parameters for the International Linear Collider (ILC) with a centre-of-mass energy of 500 GeV.

  17. Long noncoding RNA lnc-RI is a new regulator of mitosis via targeting miRNA-210-3p to release PLK1 mRNA activity

    PubMed Central

    Wang, Zhi-Dong; Shen, Li-Ping; Chang, Cheng; Zhang, Xue-Qing; Chen, Zhong-Min; Li, Lin; Chen, Hong; Zhou, Ping-Kun

    2016-01-01

    Increasing evidence indicates that lncRNAs play critical roles in various biological processes, but many have not been functionally characterized. Here, we report a novel radiation-inducible lncRNA, namely lnc-RI which is essential for cell survival and appropriate mitotic progression. Our data indicated that knockdown of lnc-RI resulted in spindle abnormalities and mitotic arrest simultaneously with sharply decreased mRNA and protein expression of PLK1, a key regulator of mitosis. Our data demonstrated that PLK1 is a key downstream mediator of lnc-RI in regulating mitosis, whereby lnc-RI competitively bound to the negative PLK1 regulating miRNA, miRNA-210-p3. Taken together, we have identified lnc-RI as a new regulator of mitosis which acts by releasing PLK1 mRNA activity via competition for binding to miRNA-210-3p. PMID:27160062

  18. Pulsed electron beam precharger

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1991-01-01

    Electron beam precharging of a high resistivity aerosol was successfully performed under a range of experimental conditions during Quarter Six of the contract. The initial E-beam particle precharging experiments completed this term were designed to extend the efficiency of particle charging and collection using a fine, monodisperse aerosol at relatively large loadings in the FSU Electron Beam Precipitator wind tunnel. There are several reasons for doing this: (1) to re-establish a baseline performance criterion for comparison to other runs, (2) to test several recently upgraded or repaired subsystems, and (3) to improve upon the collection efficiency of the electron beam precipitator when testing precharging effectiveness with a very high resistivity, moderate-to-high dust concentration. In addition, these shakedown runs were used to determine a set of suitable operational parameters for the wind tunnel, the electrostatic collecting sections, and the MINACC E-beam accelerator. These parameters will normally be held constant while the precharging parameters are varied to produce an optimum particle charge. The electron beam precharging investigation performed during the period covered by Quarter Six used virtually the same experimental apparatus and procedures as in previous contract work, and these are described for review in this report. This investigation was part of an experimental effort which ran nearly continuously for nine months, encompassing work on the electrostatic collecting section, electron beam precharger, and particle charge-to-radius measuring apparatus. A summary of the work on dc electron beam precipitation is presented here.

  19. Beam Injection into RHIC

    NASA Astrophysics Data System (ADS)

    Fischer, W.; Hahn, H.; Mackay, W. W.; Tsoupas, N.

    1997-05-01

    During the RHIC sextant test in January 1997 beam was injected into a sixth of one of the rings for the first time. We describe the injection zone and its bottlenecks, the application program to steer the beam and the injection kickers. We report on the commissioning of the injection systems and on measurements of the kickers.

  20. Picosecond beam monitor

    DOEpatents

    Schutt, D.W.; Beck, G.O.

    1974-01-01

    The current in the beam of a particle accelerator is monitored with picosecond resolution by causing the beam to impinge upon the center conductor of a coaxial line, generating a pulse of electromagnetic energy in response thereto. This pulse is detected by means such as a sampling oscilloscope. (Official Gazette)

  1. Switchable circular beam deflectors

    NASA Astrophysics Data System (ADS)

    Shang, Xiaobing; Joshi, Pankaj; Tan, Jin-Yi; De Smet, Jelle; Cuypers, Dieter; Baghdasaryan, Tigran; Vervaeke, Michael; Thienpont, Hugo; De Smet, Herbert

    2016-04-01

    In this work, we report two types of electrically tunable photonic devices with circularly symmetric polarization independent beam steering performance (beam condensing resp. beam broadening). The devices consist of circular micro grating structures combined with nematic liquid crystal (LC) layers with anti-parallel alignment. A single beam deflector converts a polarized and monochromatic green laser beam (λ =543.5 nm) into a diffraction pattern, with the peak intensity appearing at the third order when 0~{{V}\\text{pp}} is applied and at the zeroth order (no deflection) for voltages above 30~{{V}\\text{pp}} . Depending on the shape of the grating structure (non-inverted or inverted), the deflection is inwards or outwards. Both grating types can be made starting from the same diamond-tooled master mold. A polarized white light beam is symmetrically condensed resp. broadened over 2° in the off state and is passed through unchanged in the on state. By stacking two such devices with mutually orthogonal LC alignment layers, polarization independent switchable circular beam deflectors are realized with a high transmittance (>80%), and with the same beam steering performance as the polarization dependent single devices.

  2. Beam Diagnostics for FACET

    SciTech Connect

    Li, S.Z.; Hogan, M.J.; /SLAC

    2011-08-19

    FACET, the Facility for Advanced Accelerator and Experimental Tests, is a new facility being constructed in sector 20 of the SLAC linac primarily to study beam driven plasma wakefield acceleration beginning in summer 2011. The nominal FACET parameters are 23GeV, 3nC electron bunches compressed to about 20 {micro}m long and focussed to about 10 {micro}m wide. Characterization of the beam-plasma interaction requires complete knowledge of the incoming beam parameters on a pulse-to-pulse basis. FACET diagnostics include Beam Position Monitors, Toroidal current monitors, X-ray and Cerenkov based energy spectrometers, optical transition radiation (OTR) profile monitors and coherent transition radiation (CTR) bunch length measurement systems. The compliment of beam diagnostics and their expected performance are reviewed. Beam diagnostic measurements not only provide valuable insights to the running and tuning of the accelerator but also are crucial for the PWFA experiments in particular. Beam diagnostic devices are being set up at FACET and will be ready for beam commissioning in summer 2011.

  3. 77 FR 66190 - Submission for Review: It's Time To Sign Up for Direct Deposit or Direct Express, RI 38-128

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-02

    ... MANAGEMENT Submission for Review: It's Time To Sign Up for Direct Deposit or Direct Express, RI 38-128 AGENCY... agencies the opportunity to comment on a revised information collection request (ICR) 3206-0226, It's Time... Management. Title: It's Time To Sign Up for Direct Deposit or Direct Express. OMB Number:...

  4. 78 FR 19024 - Submission for Review: It's Time to Sign Up for Direct Deposit or Direct Express, RI 38-128

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-28

    ... Register on November 2, 2012, at Volume 77 FR 66190, allowing for a 60-day public comment period. No... MANAGEMENT Submission for Review: It's Time to Sign Up for Direct Deposit or Direct Express, RI 38-128 AGENCY... agencies the opportunity to comment on revised information collection request (ICR) 3206-0226, It's Time...

  5. SUMMARIES OF RESEARCH AND DEVELOPMENT ACTIVITIES PERFORMED IN RACINE R/I UNITS DURING THE 1966-67 SCHOOL YEAR. (TITLE SUPPLIED).

    ERIC Educational Resources Information Center

    QUILLING, MARY R.

    THE ACTIVITIES OF THE RACINE, WISCONSIN, R/I UNITS INCLUDED A CREATIVITY STUDY, LANGUAGE DEVELOPMENT EXPERIMENTS, TWO EXPERIMENTS IN INDIVIDUALIZING HANDWRITING, AN ANALYSIS OF THE EFFECTS OF INCREASED HOME-SCHOOL CONTACT ON PARENT ATTITUDE AND STUDENT ACHIEVEMENT, THREE EXPERIMENTS IN INDIVIDUALIZED ARITHMETIC INSTRUCTION, AND RESEARCH AND…

  6. Instability structures during periods of large Richardson number (Ri > 14): Evidence of parametric instability

    NASA Astrophysics Data System (ADS)

    Walterscheid, R. L.; Gelinas, L. J.; Hecht, J. H.; Liu, A. Z.

    2013-07-01

    commonly used criteria for shear and convective instabilities were developed for steady horizontally uniform background flows. However, the formalism that rigorously addresses the instability of waves on a basic state modulated by a primary wave is Floquet theory in which the basic state includes a wave. A Floquet system supports parametric instabilities when conventional Richardson number (Ri) criteria indicate that the system is stable. In a study of small-scale instability structures during the Maui MALT campaign, Hecht et al. (2005) noted that there were occurrences of ripple (instability) structure when the conventional criteria indicated stable conditions. We have followed up this work with a detailed survey of the occurrence of ripple structure over Maui during periods that were both stable and unstable according to conventional criteria. Values of Ri were calculated from lidar data. We have found frequent occurrence of ripple structure when Ri > 14. We have focused on a period when there are clear indications of waves and ripple structure exhibiting two-dimensional instability structure when Ri ~ 1 or greater. These results are analyzed in terms of Floquet theory and interpreted as parametric instabilities occurring for modest primary wave amplitudes.

  7. Cáncer de riñón (células renales)—Versión para profesionales de salud

    Cancer.gov

    Información del Instituto Nacional del Cáncer para profesionales de salud sobre el tratamiento del cáncer de riñón, así como referencias a estudios clínicos, investigación, estadísticas y otros temas relacionados con este tipo de cáncer.

  8. Alternaric acid stimulates phosphorylation of His-tagged RiCDPK2, a calcium-dependent protein kinase in potato plants.

    PubMed

    Hassan, A; Okuta, T; Kato, M; Hatsugai, N; Sano, Y; Ishimori, T; Okazaki, K; Doullah, M A; Shah, M M

    2012-08-16

    Calcium-dependent protein kinases (CDPK) are an essential component of plant defense mechanisms against pathogens. We investigated the effect of alternaric acid, a host-specific toxin produced by the plant fungal pathogen Alternaria solani (Pleosporaceae), on a putative plasma membrane and cytosolic kinase RiCDPK2 of potato (Solanum tuberosum) and on hypersensitive cell death of host potato cells. Alternaric acid, in the presence of Ca²⁺ and Mg²⁺, stimulated in vitro phosphorylation of His-tagged RiCDPK2, a Ca²⁺-dependent protein kinase found in potato plants. We concluded that Ca²⁺ and Mg²⁺ play an important role in the interaction between alternaric acid and RiCDPK2. Based on our observations, alternaric acid regulates RiCDPK2 kinase during the infection process in an interaction between host and A. solani, leading to the inhibition of hypersensitive cell death in the host. We suggest that alternaric acid is a primary determinant by which A. solani stimulates CDPK activity in the host, suppressing hypersensitive cell death.

  9. TLR4-Upregulated IL-1β and IL-1RI Promote Alveolar Macrophage Pyroptosis and Lung Inflammation through an Autocrine Mechanism

    PubMed Central

    He, Xingying; Qian, Yongbing; Li, Zhigang; Fan, Erica K.; Li, Yuehua; Wu, Liang; Billiar, Timothy R.; Wilson, Mark A.; Shi, Xueyin; Fan, Jie

    2016-01-01

    Acute lung injury (ALI) is a major component of multiple organ dysfunction syndrome (MODS) following pulmonary infection. Alveolar macrophages (AM) are at the center of the pathogenesis of the development of ALI. Interleukin-1β (IL-1β) is one of the key pro-inflammatory mediators, and its maturation is tightly controlled by the formation and activation of the inflammasome. The biological effects of IL-1β are mediated through IL-1 receptor (IL-1R). In this study, we investigated the influence of LPS-induced IL-1β release and IL-1RI upregulation on the development of lung inflammation. We demonstrated that in AM, LPS-TLR4 signaling not only activates Nlrp3 inflammasome activation and subsequent release of IL-1β, but also up-regulates IL-1RI expression on AM surface through MyD88 and NF-κB dependent signaling. The upregulated IL-1RI, therefore, sensitizes AM to IL-1β and results in pyroptosome formation, which in turn leads to AM pyroptosis, a type of caspase-1-dependent inflammatory cell death. We further showed that AM pyroptosis exaggerates lung inflammation. The present study demonstrates a novel mechanism underlying LPS-induced innate immunity; that is, a secondary upregulation of IL-1β-IL-1RI signaling is responsible for AM pyroptosis and augmented lung injury in response to LPS. PMID:27526865

  10. Cáncer de riñón (células renales)—Versión para pacientes

    Cancer.gov

    Información del Instituto Nacional del Cáncer sobre el tratamiento del cáncer de riñón, así como referencias a estudios clínicos, investigación, estadísticas y otros temas relacionados con este tipo de cáncer.

  11. Structural insights into the interaction of human IgG1 with FcγRI: no direct role of glycans in binding

    SciTech Connect

    Oganesyan, Vaheh Mazor, Yariv; Yang, Chunning; Cook, Kimberly E.; Woods, Robert M.; Ferguson, Andrew; Bowen, Michael A.; Martin, Tom; Zhu, Jie; Wu, Herren; Dall’Acqua, William F.

    2015-10-31

    In an effort to identify the critical structural features responsible for the high-affinity interaction of IgG1 Fc with FcγRI, the structure of the corresponding complex was solved at a resolution of 2.4 Å. The three-dimensional structure of a human IgG1 Fc fragment bound to wild-type human FcγRI is reported. The structure of the corresponding complex was solved at a resolution of 2.4 Å using molecular replacement; this is the highest resolution achieved for an unmutated FcγRI molecule. This study highlights the critical structural and functional role played by the second extracellular subdomain of FcγRI. It also explains the long-known major energetic contribution of the Fc ‘LLGG’ motif at positions 234–237, and particularly of Leu235, via a ‘lock-and-key’ mechanism. Finally, a previously held belief is corrected and a differing view is offered on the recently proposed direct role of Fc carbohydrates in the corresponding interaction. Structural evidence is provided that such glycan-related effects are strictly indirect.

  12. Beam director design report

    SciTech Connect

    Younger, F.C.

    1986-08-01

    A design and fabrication effort for a beam director is documented. The conceptual design provides for the beam to pass first through a bending and focusing system (or ''achromat''), through a second achromat, through an air-to-vacuum interface (the ''beam window''), and finally through the vernier steering system. Following an initial concept study for a beam director, a prototype permanent magnet 30/sup 0/ beam-bending achromat and prototype vernier steering magnet were designed and built. In volume II, copies are included of the funding instruments, requests for quotations, purchase orders, a complete set of as-built drawings, magnetic measurement reports, the concept design report, and the final report on the design and fabrication project. (LEW)

  13. First Beam to FACET

    SciTech Connect

    Erickson, R.; Clarke, C.; Colocho, W.; Decker, F.-J.; Hogan, M.; Kalsi, S.; Lipkowitz, N.; Nelson, J.; Phinney, N.; Schuh, P.; Sheppard, J.; Smith, H.; Smith, T.; Stanek, M.; Turner, J.; Warren, J.; Weathersby, S.; Wienands, U.; Wittmer, W.; Woodley, M.; Yocky, G.; /SLAC

    2011-12-13

    The SLAC 3km linear electron accelerator has been reconfigured to provide a beam of electrons to the new Facility for Advanced Accelerator Experimental Tests (FACET) while simultaneously providing an electron beam to the Linac Coherent Light Source (LCLS). On June 23, 2011, the first electron beam was transported through this new facility. Commissioning of FACET is in progress. On June 23, 2011, an electron beam was successfully transported through the new FACET system to a dump in Sector 20 in the linac tunnel. This was achieved while the last third of the linac, operating from the same control room, but with a separate injector system, was providing an electron beam to the Linac Coherent Light Source (LCLS), demonstrating that concurrent operation of the two facilities is practical. With the initial checkout of the new transport line essentially complete, attention is now turning toward compressing the electron bunches longitudinally and focusing them transversely to support a variety of accelerator science experiments.

  14. Laser beam alignment system

    DOEpatents

    Kasner, William H.; Racki, Daniel J.; Swenson, Clark E.

    1984-01-01

    A plurality of pivotal reflectors direct a high-power laser beam onto a workpiece, and a rotatable reflector is movable to a position wherein it intercepts the beam and deflects a major portion thereof away from its normal path, the remainder of the beam passing to the pivotal reflectors through an aperture in the rotating reflector. A plurality of targets are movable to positions intercepting the path of light traveling to the pivotal reflectors, and a preliminary adjustment of the latter is made by use of a low-power laser beam reflected from the rotating reflector, after which the same targets are used to make a final adjustment of the pivotal reflectors with the portion of the high-power laser beam passed through the rotating reflector.

  15. BEAMS3D Neutral Beam Injection Model

    NASA Astrophysics Data System (ADS)

    McMillan, Matthew; Lazerson, Samuel A.

    2014-09-01

    With the advent of applied 3D fields in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous slowing down, and pitch angle scattering are modeled with the ADAS atomic physics database. Elementary benchmark calculations are presented to verify the collisionless particle orbits, NBI model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields. Notice: this manuscript has been authored by Princeton University under Contract Number DE-AC02-09CH11466 with the US Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  16. Activity measurements of the radionuclide 99mTc for the VNIIM, Russian Federation and ENEA-INMRI, Italy, in the ongoing comparison BIPM.RI(II)-K4.Tc-99m and KCRV update in the BIPM.RI(II)-K1.Tc-99m comparison

    NASA Astrophysics Data System (ADS)

    Michottea, C.; Nonisa, M.; Alekseevb, I. V.; Kharitonovb, I. A.; Tereshchenkob, E. E.; Zanevskiyb, A. V.; Capognic, M.; De Felicec, P.; Fazioc, A.; Carconic, P.

    2016-01-01

    In 2014, comparisons of activity measurements of 99mTc using the Transfer Instrument of the International Reference System (SIRTI) took place at the VNIIM (Russian Federation) and at the ENEA-INMRI (Italy), with comparison identifier BIPM.RI(II)-K4.Tc-99m. Ampoules containing about 32 kBq of 99mTc solutions were measured in the SIRTI for three half-lives. There are now nine results in the BIPM.RI(II)-K4.Tc-99m comparison. This comparison is linked to the BIPM.RI(II)-K1.Tc-99m comparison and the key comparison reference value (KCRV) of the BIPM.RI(II)-K1.Tc-99m has been updated to include eligible results from BIPM.RI(II)-K4.Tc-99m. The degrees of equivalence between each equivalent activity measured in the SIR or the SIRTI and the KCRV have been calculated and the results are given in the form of a table. A graphical presentation is also given. Main text To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  17. Leukocyte immunoglobulin-like receptor B4 regulates key signalling molecules involved in FcγRI-mediated clathrin-dependent endocytosis and phagocytosis

    PubMed Central

    Park, Mijeong; Raftery, Mark J.; Thomas, Paul S.; Geczy, Carolyn L.; Bryant, Katherine; Tedla, Nicodemus

    2016-01-01

    FcγRI cross-linking on monocytes may trigger clathrin-mediated endocytosis, likely through interaction of multiple intracellular molecules that are controlled by phosphorylation and dephosphorylation events. However, the identity of phospho-proteins and their regulation are unknown. We proposed the leukocyte immunoglobulin-like receptor B4 (LILRB4) that inhibits FcγRI-mediated cytokine production via Tyr dephosphorylation of multiple kinases, may also regulate endocytosis/phagocytosis through similar mechanisms. FcγRI and/or LILRB4 were antibody-ligated on THP-1 cells, lysates immunoprecipitated using anti-pTyr antibody and peptides sequenced by mass spectrometry. Mascot Search identified 25 Tyr phosphorylated peptides with high confidence. Ingenuity Pathway Analysis revealed that the most significantly affected pathways were clathrin-mediated endocytosis and Fc-receptor dependent phagocytosis. Tyr phosphorylation of key candidate proteins in these pathways included common γ-chain of the Fc receptors, Syk, clathrin, E3 ubiquitin protein ligase Cbl, hepatocyte growth factor-regulated tyrosine kinase substrate, tripartite motif-containing 21 and heat shock protein 70. Importantly, co-ligation of LILRB4 with FcγRI caused significant dephosphorylation of these proteins and was associated with suppression of Fc receptor-dependent uptake of antibody-opsonised bacterial particles, indicating that LILRB4. These results suggest that Tyr phosphorylation may be critical in FcγRI-dependent endocytosis/phagocytosis that may be regulated by LILRB4 by triggering dephosphorylation of key signalling proteins. PMID:27725776

  18. The bacteriophage WORiC is the active phage element in wRi of Drosophila simulans and represents a conserved class of WO phages

    PubMed Central

    2011-01-01

    Background The alphaproteobacterium Wolbachia pipientis, the most common endosymbiont in eukaryotes, is found predominantly in insects including many Drosophila species. Although Wolbachia is primarily vertically transmitted, analysis of its genome provides evidence for frequent horizontal transfer, extensive recombination and numerous mobile genetic elements. The genome sequence of Wolbachia in Drosophila simulans Riverside (wRi) is available along with the integrated bacteriophages, enabling a detailed examination of phage genes and the role of these genes in the biology of Wolbachia and its host organisms. Wolbachia is widely known for its ability to modify the reproductive patterns of insects. One particular modification, cytoplasmic incompatibility, has previously been shown to be dependent on Wolbachia density and inversely related to the titer of lytic phage. The wRi genome has four phage regions, two WORiBs, one WORiA and one WORiC. Results In this study specific primers were designed to distinguish between these four prophage types in wRi, and quantitative PCR was used to measure the titer of bacteriophages in testes, ovaries, embryos and adult flies. In all tissues tested, WORiA and WORiB were not found to be present in excess of their integrated prophages; WORiC, however, was found to be present extrachromosomally. WORiC is undergoing extrachromosomal replication in wRi. The density of phage particles was found to be consistent in individual larvae in a laboratory population. The WORiC genome is organized in conserved blocks of genes and aligns most closely with other known lytic WO phages, WOVitA and WOCauB. Conclusions The results presented here suggest that WORiC is the lytic form of WO in D. simulans, is undergoing extrachromosomal replication in wRi, and belongs to a conserved family of phages in Wolbachia. PMID:22085419

  19. Diffraction of a Laser Beam.

    ERIC Educational Resources Information Center

    Jodoin, Ronald E.

    1979-01-01

    Investigates the effect of the nonuniform irradiance across a laser beam on diffraction of the beam, specifically the Fraunhofer diffraction of a laser beam with a Gaussian irradiance profile as it passes through a circular aperture. (GA)

  20. Electron Beam Lithography

    NASA Astrophysics Data System (ADS)

    Harriott, Lloyd R.

    1997-04-01

    Electron beams have played a significant role in semiconductor technology for more than twenty years. Early electron beam machines used a raster scanned beam spot to write patterns in electron-sensitive polymer resist materials. The main application of electron beam lithography has been in mask making. Despite the inherently high spatial resolution and wide process margins of electron beam lithography, the writing rate for semiconductor wafers has been too slow to be economically viable on a large scale. In the late 1970's, variable shape electron beam writing was developed, projecting a rectangular beam whose size can be varied for each "shot" exposure of a particular pattern, allowing some integrated circuits to be made economically where a variety of "customized" patterns are desired. In the cell or block projection electron beam exposure technique, a unit cell of a repetitive pattern is projected repeatedly to increase the level of parallelism. This can work well for highly repetitive patterns such as memory chips but is not well suited to complex varying patterns such as microprocessors. The rapid progress in the performance of integrated circuits has been largely driven by progress in optical lithography, through improvements in lens design and fabrication as well as the use of shorter wavelengths for the exposure radiation. Due to limitations from the opacity of lens and mask materials, it is unlikely that conventional optical printing methods can be used at wavelengths below 193 nm or feature sizes much below 180 nm. One candidate technology for a post-optical era is the Scattering with Angular Limitation Projection Electron-beam Lithography (SCALPEL) approach, which combines the high resolution and wide process latitude inherent in electron beam lithography with the throughput of a parallel projection system. A mask consisting of a low atomic number membrane and a high atomic number pattern layer is uniformly illuminated with high energy (100 ke

  1. Beam distributions beyond RMS

    SciTech Connect

    Decker, F.

    1995-05-05

    The beam is often represented only by its position (mean) and the width (rms=root mean squared) of its distribution. To achieve these beam parameters in a noisy condition with high backgrounds, a Gaussian distribution with offset (4 parameters) is fitted to the measured beam distribution. This gives a very robust answer and is not very sensitive to background subtraction techniques. To get higher moments of the distribution, like skew or kurtosis, a fitting function with one or two more parameters is desired which would model the higher moments. In this paper we will concentrate on an Asymmetric Gaussian and a Super Gaussian function that will give something like the skew and the kurtosis of the distribution. This information is used to quantify special beam distribution. Some are unwanted like beam tails (skew) from transverse wakefields, higher order dispersive aberrations or potential well distortion in a damping ring. A negative kurtosis of a beam distribution describes a more rectangular, compact shape like with an over-compressed beam in {ital z} or a closed to double-horned energy distribution, while a positive kurtosis looks more like a ``Christmas tree`` and can quantify a beam mismatch after filamentation. Besides the advantages of the quantification, there are some distributions which need a further investigation like long flat tails which create background particles in a detector. In particle simulations on the other hand a simple rms number might grossly overestimate the effective size (e.g. for producing luminosity) due to a few particles which are far away from the core. This can reduce the practical gain of a big theoretical improvement in the beam size. {copyright} {ital 1995} {ital American} {ital Institute} {ital of} {ital Physics}.

  2. Beam distributions beyond RMS

    SciTech Connect

    Decker, F.J.

    1994-09-01

    The beam is often represented only by its position (mean) and the width (rms = root mean squared) of its distribution. To achieve these beam parameters in a noisy condition with high backgrounds, a Gaussian distribution with offset (4 parmeters) is fitted to the measured beam distribution. This gives a very robust answer and is not very sensitive to background subtraction techniques. To get higher moments of the distribution, like skew or kurtosis, a fitting function with one or two more parameters is desired which would model the higher moments. In this paper we will concentrate on an Asymmetric Gaussian and a Super Gaussian function that will give something like the skew and the kurtosis of the distribution. This information is used to quantify special beam distribution. Some are unwanted like beam tails (skew) from transverse wakefields, higher order dispersive aberrations or potential well distortion in a damping ring. A negative kurtosis of a beam distribution describes a more rectangular, compact shape like with an over-compressed beam in z or a closed to double-homed energy distribution, while a positive kurtosis looks more like a ``Christmas tree`` and can quantify a beam mismatch after filamentation. Besides the advantages of the quantification, there are some distributions which need a further investigation like long flat tails which create background particles in a detector. In particle simulations on the other hand a simple rms number might grossly overestimate the effective size (e.g. for producing luminosity) due to a few particles which are far away from the core. This can reduce the practical gain of a big theoretical improvement in the beam size.

  3. Simulations of beam-beam and beam-wire interactions in RHIC

    SciTech Connect

    Kim, Hyung J.; Sen, Tanaji; Abreu, Natalia P.; Fischer, Wolfram; /Brookhaven

    2009-02-01

    The beam-beam interaction is one of the dominant sources of emittance growth and luminosity lifetime deterioration. A current carrying wire has been proposed to compensate long-range beam-beam effects in the LHC and strong localized long-range beam-beam effects are experimentally investigated in the RHIC collider. Tune shift, beam transfer function, and beam loss rate are measured in dedicated experiments. In this paper, they report on simulations to study the effect of beam-wire interactions based on diffusive apertures, beam loss rates, and beam transfer function using a parallelized weak-strong beam simulation code (BBSIMC). The simulation results are compared with measurements performed in RHIC during 2007 and 2008.

  4. Nondiffracting transversally polarized beam.

    PubMed

    Yuan, G H; Wei, S B; Yuan, X-C

    2011-09-01

    Generation of a nondiffracting transversally polarized beam by means of transmitting an azimuthally polarized beam through a multibelt spiral phase hologram and then highly focusing by a high-NA lens is presented. A relatively long depth of focus (∼4.84λ) of the electric field with only radial and azimuthal components is achieved. The polarization of the wavefront near the focal plane is analyzed in detail by calculating the Stokes polarization parameters. It is found that the polarization is spatially varying and entirely transversally polarized, and the polarization singularity disappears at the beam center, which makes the central bright channel possible. PMID:21886250

  5. Ion beam accelerator system

    NASA Technical Reports Server (NTRS)

    Aston, Graeme (Inventor)

    1984-01-01

    A system is described that combines geometrical and electrostatic focusing to provide high ion extraction efficiency and good focusing of an accelerated ion beam. The apparatus includes a pair of curved extraction grids (16, 18) with multiple pairs of aligned holes positioned to direct a group of beamlets (20) along converging paths. The extraction grids are closely spaced and maintained at a moderate potential to efficiently extract beamlets of ions and allow them to combine into a single beam (14). An accelerator electrode device (22) downstream from the extraction grids, is at a much lower potential than the grids to accelerate the combined beam.

  6. Ion beam accelerator system

    NASA Technical Reports Server (NTRS)

    Aston, G. (Inventor)

    1981-01-01

    A system is described that combines geometrical and electrostatic focusing to provide high ion extraction efficiency and good focusing of an accelerated ion beam. The apparatus includes a pair of curved extraction grids with multiple pairs of aligned holes positioned to direct a group of beamlets along converging paths. The extraction grids are closely spaced and maintained at a moderate potential to efficiently extract beamlets of ions and allow them to combine into a single beam. An accelerator electrode device downstream from the extraction grids is at a much lower potential than the grids to accelerate the combined beam. The application of the system to ion implantation is mentioned.

  7. Beam dynamics in SLC

    SciTech Connect

    Assmann, R.W.

    1997-07-01

    Beam dynamics issues affect many different aspects of the SLC performance. This paper concentrates on the multi-particle beam dynamics in the linac and the associated limitations that are imposed on the overall SLC performance. The beam behavior in the presence of strong wakefields has been studied in order to optimize the performance and to predict the expected emittances in high performance linacs. Emittance measurements and simulations are presented for the SLAC linac and are compared in detail. As the overall SLC performance depends on the accelerator stability, the tuning stability is discussed. Measurements are shown and the consequences for the performance of the SLC are discussed.

  8. Ion beam lithography system

    DOEpatents

    Leung, Ka-Ngo

    2005-08-02

    A maskless plasma-formed ion beam lithography tool provides for patterning of sub-50 nm features on large area flat or curved substrate surfaces. The system is very compact and does not require an accelerator column and electrostatic beam scanning components. The patterns are formed by switching beamlets on or off from a two electrode blanking system with the substrate being scanned mechanically in one dimension. This arrangement can provide a maskless nano-beam lithography tool for economic and high throughput processing.

  9. Ion beam thruster shield

    NASA Technical Reports Server (NTRS)

    Power, J. L. (Inventor)

    1976-01-01

    An ion thruster beam shield is provided that comprises a cylindrical housing that extends downstream from the ion thruster and a plurality of annular vanes which are spaced along the length of the housing, and extend inwardly from the interior wall of the housing. The shield intercepts and stops all charge exchange and beam ions, neutral propellant, and sputter products formed due to the interaction of beam and shield emanating from the ion thruster outside of a fixed conical angle from the thruster axis. Further, the shield prevents the sputter products formed during the operation of the engine from escaping the interior volume of the shield.

  10. Caution -- Beam Crossing Ahead

    SciTech Connect

    Barat, Kenneth L.

    2008-04-02

    There are times when a laser beam needs to cross between tables or even go from one room to another. This presents an interesting traffic-flow and safety challenge to both the laser safety officer and laser user. Fortunately it is a challenge that has several solutions But the simplest solution may not be the best one. For example, the simplest way to get a beam from one optical table to another is just to put a sturdy tube around it. That's a permanent solution, and it completely contains the laser beam. While this is laser safe, there can be egress issues if it blocks a walkway. One comment this author often hears is, 'We can just duck under the tube.' The fire marshal, as well as the laser safety officer, might have issues with this. Especially in the case of a darkened lab, a blocked walkway can present a hazard of its own. One good solution is to transport the beam from Point A to Point B through a fiberoptic cable, when that is possible. One should easily be able to run the fiber up and over any walkway or down through a conduit on the floor. An important concern often overlooked with fibers is a label at the termination end indicating disconnection may expose one to laser radiation. Suppose there's an experiment that is usually confined to a single optical table, but sometimes needs to expand to a second table. It's inconvenient to install a permanent tube between the tables, so some sort of temporary arrangement is desirable. I have often seen people casually lay a beam tube across support arms, and remove it when it's not needed. The problem with this approach is that there's no mechanism to prevent the beam from crossing if somebody's forgotten the tube, or if the tube gets knocked out of place. A better solution is a mechanism that only allows the beam to cross when the beam protection is in place. A swing shutter, or a guillotine and swing arm, are examples (Figures 1 and 2). Another alternative is a sensor, maybe a little microswitch, that activates a

  11. Simulation study of beam-beam effects in ion beams with large space charge tuneshift

    SciTech Connect

    Montag C.

    2012-05-20

    During low-energy operations with gold-gold collisions at 3.85 GeV beam energy, significant beam lifetime reductions have been observed due to the beam-beam interaction in the presence of large space charge tuneshifts. These beam-beam tuneshift parameters were about an order of magnitude smaller than during regular high energy operations. To get a better understanding of this effect, simulations have been performed. Recent results are presented.

  12. LEDA BEAM DIAGNOSTICS INSTRUMENTATION: BEAM POSITION MONITORS

    SciTech Connect

    D. BARR; ET AL

    2000-05-01

    The Low Energy Demonstration Accelerator (LEDA) facility located at Los Alamos National Laboratory (LANL) accelerates protons to an energy of 6.7-MeV and current of 100-mA operating in either a pulsed or cw mode. Of key importance to the commissioning and operations effort is the Beam Position Monitor system (BPM). The LEDA BPM system uses five micro-stripline beam position monitors processed by log ratio processing electronics with data acquisition via a series of custom TMS32OC40 Digital Signal Processing (DSP) boards. Of special interest to this paper is the operation of the system, the log ratio processing, and the system calibration technique. This paper will also cover the DSP system operations and their interaction with the main accelerator control system.

  13. Neutral particle beam intensity controller

    DOEpatents

    Dagenhart, W.K.

    1984-05-29

    The neutral beam intensity controller is based on selected magnetic defocusing of the ion beam prior to neutralization. The defocused portion of the beam is dumped onto a beam dump disposed perpendicular to the beam axis. Selective defocusing is accomplished by means of a magnetic field generator disposed about the neutralizer so that the field is transverse to the beam axis. The magnetic field intensity is varied to provide the selected partial beam defocusing of the ions prior to neutralization. The desired focused neutral beam portion passes along the beam path through a defining aperture in the beam dump, thereby controlling the desired fraction of neutral particles transmitted to a utilization device without altering the kinetic energy level of the desired neutral particle fraction. By proper selection of the magnetic field intensity, virtually zero through 100% intensity control of the neutral beam is achieved.

  14. Focused ion beam system

    DOEpatents

    Leung, Ka-Ngo; Gough, Richard A.; Ji, Qing; Lee, Yung-Hee Yvette

    1999-01-01

    A focused ion beam (FIB) system produces a final beam spot size down to 0.1 .mu.m or less and an ion beam output current on the order of microamps. The FIB system increases ion source brightness by properly configuring the first (plasma) and second (extraction) electrodes. The first electrode is configured to have a high aperture diameter to electrode thickness aspect ratio. Additional accelerator and focusing electrodes are used to produce the final beam. As few as five electrodes can be used, providing a very compact FIB system with a length down to only 20 mm. Multibeamlet arrangements with a single ion source can be produced to increase throughput. The FIB system can be used for nanolithography and doping applications for fabrication of semiconductor devices with minimum feature sizes of 0.1 .mu.m or less.

  15. Focused ion beam system

    DOEpatents

    Leung, K.; Gough, R.A.; Ji, Q.; Lee, Y.Y.

    1999-08-31

    A focused ion beam (FIB) system produces a final beam spot size down to 0.1 {mu}m or less and an ion beam output current on the order of microamps. The FIB system increases ion source brightness by properly configuring the first (plasma) and second (extraction) electrodes. The first electrode is configured to have a high aperture diameter to electrode thickness aspect ratio. Additional accelerator and focusing electrodes are used to produce the final beam. As few as five electrodes can be used, providing a very compact FIB system with a length down to only 20 mm. Multibeamlet arrangements with a single ion source can be produced to increase throughput. The FIB system can be used for nanolithography and doping applications for fabrication of semiconductor devices with minimum feature sizes of 0.1 m or less. 13 figs.

  16. Ion beam texturing

    NASA Technical Reports Server (NTRS)

    Hudson, W. R.

    1976-01-01

    A microscopic surface texture is created by sputter etching a surface while simultaneously sputter depositing a lower sputter yield material onto the surface. A xenon ion beam source has been used to perform this texturing process on samples as large as three centimeters in diameter. Ion beam textured surface structures have been characterized with SEM photomicrographs for a large number of materials including Cu, Al, Si, Ti, Ni, Fe, Stainless steel, Au, and Ag. Surfaces have been textured using a variety of low sputter yield materials - Ta, Mo, Nb, and Ti. The initial stages of the texture creation have been documented, and the technique of ion beam sputter removal of any remaining deposited material has been studied. A number of other texturing parameters have been studied such as the variation of the texture with ion beam power, surface temperature, and the rate of texture growth with sputter etching time.

  17. Microwave beam power

    NASA Technical Reports Server (NTRS)

    Faymon, Karl A.

    1989-01-01

    Information on microwave beam power is given in viewgraph form. Information is given on orbit transfer proulsion applications, costs of delivering 100 kWe of usable power, and costs of delivering a 1 kg payload into orbit.

  18. Pulsed ion beam source

    DOEpatents

    Greenly, John B.

    1997-01-01

    An improved pulsed ion beam source having a new biasing circuit for the fast magnetic field. This circuit provides for an initial negative bias for the field created by the fast coils in the ion beam source which pre-ionize the gas in the source, ionize the gas and deliver the gas to the proper position in the accelerating gap between the anode and cathode assemblies in the ion beam source. The initial negative bias improves the interaction between the location of the nulls in the composite magnetic field in the ion beam source and the position of the gas for pre-ionization and ionization into the plasma as well as final positioning of the plasma in the accelerating gap. Improvements to the construction of the flux excluders in the anode assembly are also accomplished by fabricating them as layered structures with a high melting point, low conductivity material on the outsides with a high conductivity material in the center.

  19. Final focus test beam

    SciTech Connect

    Not Available

    1991-03-01

    This report discusses the following: the Final Focus Test Beam Project; optical design; magnets; instrumentation; magnetic measurement and BPM calibration; mechanical alignment and stabilization; vacuum system; power supplies; control system; radiation shielding and personnel protection; infrastructure; and administration.

  20. Pulsed electron beam precharger

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1991-01-01

    Electron beam precharging of a high resistivity aerosol was successfully demonstrated during this reporting period (Quarters Five and Six). The initial E-beam particle precharging experiments completed this term were designed to confirm and extend some of the work performed under the previous contract. There are several reasons for doing this: (1) to re-establish a baseline performance criterion for comparison to other runs, (2) to test several recently upgraded or repaired subsystems, and (3) to improve upon the collection efficiency of the electron beam precipitator when testing precharging effectiveness with a very high resistivity, moderate-to-high concentration dust load. In addition, these shakedown runs were used to determine a set of suitable operational parameters for the wind tunnel, the electrostatic collecting sections, and the MINACC E-beam accelerator. These parameters will generally be held constant while the precharging parameters are varied to produce an optimum particle charge.

  1. TRANSVERSE BEAM TRANSFER FUNCTIONS OF COLLIDING BEAMS IN RHIC

    SciTech Connect

    FISCHER,W.; BLASKIEWICZ, M.; CALAGA, R.; CAMERON, P.; HERR, W.; PIELONI, T.

    2007-06-25

    We use transverse beam transfer functions to measure tune distributions of colliding beams in RHIC. The tune has a distribution due to the beam-beam interaction, nonlinear magnetic fields -- particularly in the interaction region magnets, and non-zero chromaticity in conjunction with momentum spread. The measured tune distributions are compared with calculations.

  2. Intense ion beam generator

    DOEpatents

    Humphries, Jr., Stanley; Sudan, Ravindra N.

    1977-08-30

    Methods and apparatus for producing intense megavolt ion beams are disclosed. In one embodiment, a reflex triode-type pulsed ion accelerator is described which produces ion pulses of more than 5 kiloamperes current with a peak energy of 3 MeV. In other embodiments, the device is constructed so as to focus the beam of ions for high concentration and ease of extraction, and magnetic insulation is provided to increase the efficiency of operation.

  3. High intensity neutrino beams

    SciTech Connect

    Ichikawa, A. K.

    2015-07-15

    High-intensity proton accelerator complex enabled long baseline neutrino oscillation experiments with a precisely controlled neutrino beam. The beam power so far achieved is a few hundred kW with enourmorous efforts of accelerator physicists and engineers. However, to fully understand the lepton mixing structure, MW-class accelerators are desired. We describe the current intensity-frontier high-energy proton accelerators, their plans to go beyond and technical challenges in the neutrino beamline facilities.

  4. Betatrons with kiloampere beams

    SciTech Connect

    Peterson, J.M.

    1982-11-01

    Although the magnetic-induction method of acceleration used in the betatron is inherently capable of accelerating intense particle beams to high energy, many beam-instability questions arise when beams in the kilo-ampere range are considered. The intense electromagnetic fields produced by the beam, and by the image currents and charges induced in the surrounding walls, can produce very disruptive effects. Several unstable modes of collective oscillation are possible; the suppression of any one of them usually involves energy spread for Landau damping and careful design of the electrical character of the vacuum chamber. The various design criteria are often mutually incompatible. Space-charge detuning can be severe unless large beam apertures and high-energy injection are used. In order to have an acceptably low degree of space-charge detuning in the acceleration of a 10-kilo-ampere electron beam, for example, an injection energy on the order of 50 MeV seems necessary, in which case the forces due to nearby wall images can have a larger effect than the internal forces of the beam. A method of image compensation was invented for reducing the net image forces; it serves also to decrease the longitudinal beam impedance and thus helps alleviate the longitudinal instability as well. In order to avoid the ion-electron collective instability a vacuum in the range of 10/sup -8/ torr is required for an acceleration time of 1 millisecond. A multi-ring betatron system using the 50-MeV Advanced Test Accelerator at LLNL as an injector was conceptually designed.

  5. Nonparaxial hypergeometric beams

    NASA Astrophysics Data System (ADS)

    Kotlyar, V. V.; Kovalev, A. A.

    2009-04-01

    We derive an analytical expression to describe the exact solution of the Helmholtz equation in cylindrical coordinates as a product of two Kummer functions. The solution is presented as a sum of two terms that describe the nonparaxial hypergeometric light beams propagated along the optical axis in the positive and negative directions. With the distance from the initial plane becoming much larger than the wavelength of light, the expression derived for the nonparaxial hypergeometric beam coincides with that for a paraxial hypergeometric mode.

  6. Beam/seam alignment control for electron beam welding

    DOEpatents

    Burkhardt, Jr., James H.; Henry, J. James; Davenport, Clyde M.

    1980-01-01

    This invention relates to a dynamic beam/seam alignment control system for electron beam welds utilizing video apparatus. The system includes automatic control of workpiece illumination, near infrared illumination of the workpiece to limit the range of illumination and camera sensitivity adjustment, curve fitting of seam position data to obtain an accurate measure of beam/seam alignment, and automatic beam detection and calculation of the threshold beam level from the peak beam level of the preceding video line to locate the beam or seam edges.

  7. SPIDER beam dump as diagnostic of the particle beam

    NASA Astrophysics Data System (ADS)

    Zaupa, M.; Dalla Palma, M.; Sartori, E.; Brombin, M.; Pasqualotto, R.

    2016-11-01

    The beam power produced by the negative ion source for the production of ion of deuterium extracted from RF plasma is mainly absorbed by the beam dump component which has been designed also for measuring the temperatures on the dumping panels for beam diagnostics. A finite element code has been developed to characterize, by thermo-hydraulic analysis, the sensitivity of the beam dump to the different beam parameters. The results prove the capability of diagnosing the beam divergence and the horizontal misalignment, while the entity of the halo fraction appears hardly detectable without considering the other foreseen diagnostics like tomography and beam emission spectroscopy.

  8. Transverse Beam Size Effects in Beam Position Monitors

    NASA Astrophysics Data System (ADS)

    Kurennoy, Sergey

    2001-04-01

    The fields produced by a long beam with a given transverse charge distribution in a homogeneous vacuum chamber are studied. Signals induced by the displaced finite-size beam on electrodes of a beam position monitor (BPM) are calculated and compared to those from a pencil beam. The corrections to BPM signals due to a finite beam size are found analytically for a few particular transverse distributions of the beam current. The results for fields can also be directly applied for calculating the beam coupling impedances of small discontinuities.

  9. Test beams and polarized fixed target beams at the NLC

    NASA Astrophysics Data System (ADS)

    Keller, Lewis; Pitthan, Rainer; Rokni, Sayed; Thompson, Kathleen; Kolomensky, Yury

    2001-07-01

    A conceptual program to use NLC beams for test beams and fixed target physics is described. Primary undisrupted polarized beams would be the most simple to use, but for NLC, the disrupted beams are of good enough quality that they could also be used, after collimation of the low energy tails, for test beams and fixed target physics. Pertinent issues are: what is the compelling physics, what are the requirements on beams and running time, and what is the impact on colliding beam physics running. A list of physics topics is given; one topic (Mo/ller Scattering) is treated in more depth.

  10. High power beam analysis

    NASA Astrophysics Data System (ADS)

    Aharon, Oren

    2014-02-01

    In various modern scientific and industrial laser applications, beam-shaping optics manipulates the laser spot size and its intensity distribution. However the designed laser spot frequently deviates from the design goal due to real life imperfections and effects, such as: input laser distortions, optical distortion, heating, overall instabilities, and non-linear effects. Lasers provide the ability to accurately deliver large amounts of energy to a target area with very high accuracy. Thus monitoring beam size power and beam location is of high importance for high quality results and repeatability. Depending on the combination of wavelength, beam size and pulse duration , laser energy is absorbed by the material surface, yielding into processes such as cutting, welding, surface treatment, brazing and many other applications. This article will cover the aspect of laser beam measurements, especially at the focal point where it matters the most. A brief introduction to the material processing interactions will be covered, followed by fundamentals of laser beam propagation, novel measurement techniques, actual measurement and brief conclusions.

  11. Obtaining an equivalent beam

    NASA Technical Reports Server (NTRS)

    Butler, Thomas G.

    1990-01-01

    In modeling a complex structure the researcher was faced with a component that would have logical appeal if it were modeled as a beam. The structure was a mast of a robot controlled gantry crane. The structure up to this point already had a large number of degrees of freedom, so the idea of conserving grid points by modeling the mast as a beam was attractive. The researcher decided to make a separate problem of of the mast and model it in three dimensions with plates, then extract the equivalent beam properties by setting up the loading to simulate beam-like deformation and constraints. The results could then be used to represent the mast as a beam in the full model. A comparison was made of properties derived from models of different constraints versus manual calculations. The researcher shows that the three-dimensional model is ineffective in trying to conform to the requirements of an equivalent beam representation. If a full 3-D plate model were used in the complete representation of the crane structure, good results would be obtained. Since the attempt is to economize on the size of the model, a better way to achieve the same results is to use substructuring and condense the mast to equivalent end boundary and intermediate mass points.

  12. LSST optical beam simulator

    NASA Astrophysics Data System (ADS)

    Tyson, J. A.; Sasian, J.; Gilmore, K.; Bradshaw, A.; Claver, C.; Klint, M.; Muller, G.; Poczulp, G.; Resseguie, E.

    2014-07-01

    We describe a camera beam simulator for the LSST which is capable of illuminating a 60mm field at f/1.2 with realistic astronomical scenes, enabling studies of CCD astrometric and photometric performance. The goal is to fully simulate LSST observing, in order to characterize charge transport and other features in the thick fully-depleted CCDs and to probe low level systematics under realistic conditions. The automated system simulates the centrally obscured LSST beam and sky scenes, including the spectral shape of the night sky. The doubly telecentric design uses a nearly unit magnification design consisting of a spherical mirror, three BK7 lenses, and one beam-splitter window. To achieve the relatively large field the beam-splitter window is used twice. The motivation for this LSST beam test facility was driven by the need to fully characterize a new generation of thick fully-depleted CCDs, and assess their suitability for the broad range of science which is planned for LSST. Due to the fast beam illumination and the thick silicon design [each pixel is 10 microns wide and over 100 microns deep] at long wavelengths there can be effects of photon transport and charge transport in the high purity silicon. The focal surface covers a field more than sufficient for a 40×40mm LSST CCD. Delivered optical quality meets design goals, with 50% energy within a 5 micron circle. The tests of CCD performance are briefly described.

  13. Photon beam position monitor

    DOEpatents

    Kuzay, Tuncer M.; Shu, Deming

    1995-01-01

    A photon beam position monitor for use in the front end of a beamline of a high heat flux and high energy photon source such as a synchrotron radiation storage ring detects and measures the position and, when a pair of such monitors are used in tandem, the slope of a photon beam emanating from an insertion device such as a wiggler or an undulator inserted in the straight sections of the ring. The photon beam position monitor includes a plurality of spaced blades for precisely locating the photon beam, with each blade comprised of chemical vapor deposition (CVD) diamond with an outer metal coating of a photon sensitive metal such as tungsten, molybdenum, etc., which combination emits electrons when a high energy photon beam is incident upon the blade. Two such monitors are contemplated for use in the front end of the beamline, with the two monitors having vertically and horizontally offset detector blades to avoid blade "shadowing". Provision is made for aligning the detector blades with the photon beam and limiting detector blade temperature during operation.

  14. Photon beam position monitor

    DOEpatents

    Kuzay, T.M.; Shu, D.

    1995-02-07

    A photon beam position monitor is disclosed for use in the front end of a beamline of a high heat flux and high energy photon source such as a synchrotron radiation storage ring detects and measures the position and, when a pair of such monitors are used in tandem, the slope of a photon beam emanating from an insertion device such as a wiggler or an undulator inserted in the straight sections of the ring. The photon beam position monitor includes a plurality of spaced blades for precisely locating the photon beam, with each blade comprised of chemical vapor deposition (CVD) diamond with an outer metal coating of a photon sensitive metal such as tungsten, molybdenum, etc., which combination emits electrons when a high energy photon beam is incident upon the blade. Two such monitors are contemplated for use in the front end of the beamline, with the two monitors having vertically and horizontally offset detector blades to avoid blade ''shadowing''. Provision is made for aligning the detector blades with the photon beam and limiting detector blade temperature during operation. 18 figs.

  15. Ion Beam Epitaxy

    NASA Astrophysics Data System (ADS)

    Yamada, I.

    The following sections are included: * FILM FORMATION BY ION BEAMS * Fundamental Processes in Film Formation by Low Energy Ion Beams * Comparison of ICB with Other Physical Vapor Deposition Methods * Vacuum Deposition * Sputter Deposition * Ion Plating * Ion Beam Deposition * Simultaneous Deposition and Implantation * Plasma Enhanced Deposition * Section I References * ION CLUSTER BEAM DEPOSITION AND CLUSTER BEAM FORMATION * Nucleation Process * Growth and Condensation Process * Section II References * CHARACTERISTICS OF THE CLUSTER * Velocity of Clusters * Energy of Clusters * TEM Observation of Clusters * Structural Properties * Section III References * IONIZED CLUSTER BEAM DEPOSITION SYSTEM * Section IV References * FILM DEPOSITION PROCESS BY ICB * Fundamental Process * Effects of Kinetic Energy on the Film Properties * Epitaxial phenomena * Crystallographic Structure * Physical Structure of Films * Effects of the Electric Charge on the Film Properties * Section V References * APPLICATIONS * Silicon and Silicon Alloy Films * Low Temperature Epitaxy of Silicon Films * Thermally Stable a-Si Film Growth * High Quality SiO2 Film Deposition * Epitaxial A1 Films * Electromigration Resistant A1 Film * Thermally Stable Al/Si Contact * II-VI and III-V Compound Films * Thin Multiple Layered Film * CONCLUSIONS * Acknowledgements * Section VI References

  16. A beam transport system for an intense He(-) beam source.

    PubMed

    Tanaka, N; Kikuchi, M; Nagamura, T; Sugawara, H; Takeuchi, S; Kobuchi, T; Okamoto, A; Shinto, K; Kitajima, S; Sasao, M; Wada, M

    2008-02-01

    We have been developing a test stand for fast He(0) beam production. One of the major issues is how to transport effectively the He(+) and He(-) beams from which the He(0) beam is produced. The beam should be focused in two transverse focal points, the center of the charge exchange cell and the electrostatic accelerator. We studied the beam transport system and effect of space charge neutralization in the test stand by experiments and calculation.

  17. Dual-Cantilever-Beam Accelerometer

    NASA Technical Reports Server (NTRS)

    Reynolds, Emmitt A.; Speckhart, Frank H.

    1988-01-01

    Sensitivity to velocity changes along beam axis reduced. Weighted-end cantilever beams of accelerometer deflected equally by acceleration in y direction. When acceleration to right as well as up or down, right beam deflected more, while left beam deflected less. Bridge circuit averages outputs of strain gauges measuring deflections, so cross-axis sensitivity of accelerometer reduced. New device simple and inexpensive.

  18. Single element laser beam shaper

    DOEpatents

    Zhang, Shukui; Michelle D. Shinn

    2005-09-13

    A single lens laser beam shaper for converting laser beams from any spatial profile to a flat-top or uniform spatial profile. The laser beam shaper includes a lens having two aspheric surfaces. The beam shaper significantly simplifies the overall structure in comparison with conventional 2-element systems and therefore provides great ease in alignment and reduction of cost.

  19. Holographic memory using beam steering

    NASA Technical Reports Server (NTRS)

    Chao, Tien-Hsin (Inventor); Hanan, Jay C. (Inventor); Reyes, George F. (Inventor); Zhou, Hanying (Inventor)

    2007-01-01

    A method, apparatus, and system provide the ability for storing holograms at high speed. A single laser diode emits a collimated laser beam to both write to and read from a photorefractice crystal. One or more liquid crystal beam steering spatial light modulators (BSSLMs) steer a reference beam, split from the collimated laser beam, at high speed to the photorefractive crystal.

  20. Photodetachment process for beam neutralization

    DOEpatents

    Fink, J.H.; Frank, A.M.

    1979-02-20

    A process for neutralization of accelerated ions employing photo-induced charge detachment is disclosed. The process involves directing a laser beam across the path of a negative ion beam such as to effect photodetachment of electrons from the beam ions. The frequency of the laser beam employed is selected to provide the maximum cross-section for the photodetachment process. 2 figs.

  1. Photodetachment process for beam neutralization

    DOEpatents

    Fink, Joel H. [Livermore, CA; Frank, Alan M. [Livermore, CA

    1979-02-20

    A process for neutralization of accelerated ions employing photo-induced charge detachment. The process involves directing a laser beam across the path of a negative ion beam such as to effect photodetachment of electrons from the beam ions. The frequency of the laser beam employed is selected to provide the maximum cross-section for the photodetachment process.

  2. Polynomial Beam Element Analysis Module

    SciTech Connect

    Ning, S. Andrew

    2013-05-01

    pBEAM (Polynomial Beam Element Analysis Module) is a finite element code for beam-like structures. The methodology uses Euler? Bernoulli beam elements with 12 degrees of freedom (3 translation and 3 rotational at each end of the element).

  3. Beam Trail Tracking at Fermilab

    SciTech Connect

    Nicklaus, Dennis J.; Carmichael, Linden Ralph; Neswold, Richard; Yuan, Zongwei

    2015-01-01

    We present a system for acquiring and sorting data from select devices depending on the destination of each particular beam pulse in the Fermilab accelerator chain. The 15 Hz beam that begins in the Fermilab ion source can be directed to a variety of additional accelerators, beam lines, beam dumps, and experiments. We have implemented a data acquisition system that senses the destination of each pulse and reads the appropriate beam intensity devices so that profiles of the beam can be stored and analysed for each type of beam trail. We envision utilizing this data long term to identify trends in the performance of the accelerators

  4. Light beam frequency comb generator

    DOEpatents

    Priatko, G.J.; Kaskey, J.A.

    1992-11-24

    A light beam frequency comb generator uses an acousto-optic modulator to generate a plurality of light beams with frequencies which are uniformly separated and possess common noise and drift characteristics. A well collimated monochromatic input light beam is passed through this modulator to produce a set of both frequency shifted and unshifted optical beams. An optical system directs one or more frequency shifted beams along a path which is parallel to the path of the input light beam such that the frequency shifted beams are made incident on the modulator proximate to but separated from the point of incidence of the input light beam. After the beam is thus returned to and passed through the modulator repeatedly, a plurality of mutually parallel beams are generated which are frequency-shifted different numbers of times and possess common noise and drift characteristics. 2 figs.

  5. Light beam frequency comb generator

    DOEpatents

    Priatko, Gordon J.; Kaskey, Jeffrey A.

    1992-01-01

    A light beam frequency comb generator uses an acousto-optic modulator to generate a plurality of light beams with frequencies which are uniformly separated and possess common noise and drift characteristics. A well collimated monochromatic input light beam is passed through this modulator to produce a set of both frequency shifted and unshifted optical beams. An optical system directs one or more frequency shifted beams along a path which is parallel to the path of the input light beam such that the frequency shifted beams are made incident on the modulator proximate to but separated from the point of incidence of the input light beam. After the beam is thus returned to and passed through the modulator repeatedly, a plurality of mutually parallel beams are generated which are frequency-shifted different numbers of times and possess common noise and drift characteristics.

  6. Rat fat-cells have three types of adenosine receptors (Ra, Ri and P). Differential effects of pertussis toxin.

    PubMed Central

    García-Sáinz, J A; Torner, M L

    1985-01-01

    Activation of rat adipocyte R1 adenosine receptors by phenylisopropyladenosine (PIA) decreased cyclic AMP and lipolysis; this effect was blocked in cells from pertussis-toxin-treated rats. In contrast, the ability of 2',5'-dideoxyadenosine to decrease cyclic AMP was not affected by pertussis-toxin treatment. Addition of adenosine deaminase to the medium in which adipocytes from control animals were incubated resulted in activation of lipolysis. Interestingly, adipocytes from toxin-treated rats (which had an already increased basal lipolysis) responded in an opposite fashion to the addition of adenosine deaminase, i.e. the enzyme decreased lipolysis, which suggested that adenosine might be increasing lipolysis in these cells. Studies with the selective agonists N-ethylcarboxamidoadenosine (NECA) and PIA indicated that adenosine increases lipolysis and cyclic AMP accumulation in these cells and that these actions are mediated through Ra adenosine receptors. Adenosine-mediated accumulation of cyclic AMP was also observed in cells preincubated with pertussis toxin (2 micrograms/ml) for 3 h. In these studies NECA was also more effective than PIA. Our results indicate that there are three types of adenosine receptors in fat-cells, whose actions are affected differently by pertussis toxin, i.e. Ri-mediated actions are abolished, Ra-mediated actions are revealed and P-mediated actions are not affected. PMID:3004405

  7. Interaction of berenil with the EcoRI dodecamer d(CGCGAATTCGCG) sub 2 in solution studied by NMR

    SciTech Connect

    Lane, A.N. ); Jenkins, T.C.; Neidle, S. ); Brown, T. )

    1991-02-05

    The conformation of the EcoRI dodecamer d(CGCGAATTCGCG){sub 2} has been examined in solution by {sup 1}H and {sup 31}P NMR. Spin-spin coupling constants and nuclear Overhauser (NOE) enhancement spectroscopy show that all deoxyriboses lie in the south domain, with a small admixture of the north conformation (0-20%). The time dependence of the nuclear Overhauser enhancements also reveals a relatively uniform conformation at the glycosidic bonds. The average helical twist is 36.5. Tilt angles are small, and roll angles are poorly determined. Both the NOE intensities and {sup 31}P relaxation data imply conformational anomalies at the C3-G4/C9-G10 and the A5-A6/T7-T8 steps. Berenil binds in 1:1 stoichiometry to the dodecamer with high affinity and causes substantial changes in chemical shifts of the sugar protons of nucleotides Ado 5-Cyt 9 and of the H2 resonances of the two Ado residues. NOEs are observed between the aromatic protons of berenil and the H1{prime} of both Thy 7 and Thy 8, as well as to Ado 5 and Ado 6 H2. These results firmly establish that berenil binds via the minor groove and closely approaches the nucleotides Ado 6, Thy 7, and Thy 8. Using the observed NOEs between the ligand and the DNA together with the derived glycosidic torsion angles, the authors have built models that satisfy all of the available solution data.

  8. Distribution and dynamics of rat basophilic leukemia immunoglobulin E receptors (FcepsilonRI) on planar ligand-presenting surfaces.

    PubMed

    Spendier, Kathrin; Carroll-Portillo, Amanda; Lidke, Keith A; Wilson, Bridget S; Timlin, Jerilyn A; Thomas, James L

    2010-07-21

    There is considerable interest in the signaling mechanisms of immunoreceptors, especially when triggered with membrane-bound ligands. We have quantified the spatiotemporal dynamics of the redistribution of immunoglobulin E-loaded receptors (IgE-FcepsilonRI) on rat basophilic leukemia-2H3 mast cells in contact with fluid and gel-phase membranes displaying ligands for immunoglobulin E, using total internal reflection fluorescence microscopy. To clearly separate the kinetics of receptor redistribution from cell spreading, and to precisely define the initial contact time (+/-50 ms), micropipette cell manipulation was used to bring individual cells into contact with surfaces. On ligand-free surfaces, there are micron-scale heterogeneities in fluorescence that likely reflect regions of the cell that are more closely apposed to the substrate. When ligands are present, receptor clusters form with this same size scale. The initial rate of accumulation of receptors into the clusters is consistent with diffusion-limited trapping with D approximately 10(-1) microm2/s. These results support the hypothesis that clusters form by diffusion to cell-surface contact regions. Over longer timescales (>10 s), individual clusters moved with both diffusive and directed motion components. The dynamics of the cluster motion is similar to the dynamics of membrane fluctuations of cells on ligand-free fluid membranes. Thus, the same cellular machinery may be responsible for both processes.

  9. Distribution and Dynamics of Rat Basophilic Leukemia Immunoglobulin E Receptors (FcɛRI) on Planar Ligand-Presenting Surfaces

    PubMed Central

    Spendier, Kathrin; Carroll-Portillo, Amanda; Lidke, Keith A.; Wilson, Bridget S.; Timlin, Jerilyn A.; Thomas, James L.

    2010-01-01

    Abstract There is considerable interest in the signaling mechanisms of immunoreceptors, especially when triggered with membrane-bound ligands. We have quantified the spatiotemporal dynamics of the redistribution of immunoglobulin E-loaded receptors (IgE-FcɛRI) on rat basophilic leukemia-2H3 mast cells in contact with fluid and gel-phase membranes displaying ligands for immunoglobulin E, using total internal reflection fluorescence microscopy. To clearly separate the kinetics of receptor redistribution from cell spreading, and to precisely define the initial contact time (±50 ms), micropipette cell manipulation was used to bring individual cells into contact with surfaces. On ligand-free surfaces, there are micron-scale heterogeneities in fluorescence that likely reflect regions of the cell that are more closely apposed to the substrate. When ligands are present, receptor clusters form with this same size scale. The initial rate of accumulation of receptors into the clusters is consistent with diffusion-limited trapping with D ∼10−1μm2/s. These results support the hypothesis that clusters form by diffusion to cell-surface contact regions. Over longer timescales (>10 s), individual clusters moved with both diffusive and directed motion components. The dynamics of the cluster motion is similar to the dynamics of membrane fluctuations of cells on ligand-free fluid membranes. Thus, the same cellular machinery may be responsible for both processes. PMID:20643056

  10. Beam Characterizations at Femtosecond Electron Beam Facility

    SciTech Connect

    Rimjaem, S.; Jinamoon, V.; Kangrang, M.; Kusoljariyakul, K.; Saisut, J.; Thongbai, C.; Vilaithong, T.; Rhodes, M.W.; Wichaisirimongkol, P.; Wiedemann, H.; /SLAC

    2006-03-17

    The SURIYA project at the Fast Neutron Research Facility (FNRF) has been established and is being commissioning to generate femtosecond (fs) electron bunches. Theses short bunches are produced by a system consisting of an S-band thermionic cathode RF-gun, an alpha magnet (a-magnet) serving as a magnetic bunch compressor, and a SLAC-type linear accelerator (linac). The characteristics of its major components and the beam characterizations as well as the preliminary experimental results will be presented and discussed in this paper.

  11. Cloning and sequencing of the Thermoanaerobacterium saccharolyticum B6A-RI apu gene and purification and characterization of the amylopullulanase from Escherichia coli.

    PubMed

    Ramesh, M V; Podkovyrov, S M; Lowe, S E; Zeikus, J G

    1994-01-01

    The amylopullulanase gene (apu) of the thermophilic anaerobic bacterium Thermoanaerobacterium saccharolyticum B6A-RI was cloned into Escherichia coli. The complete nucleotide sequence of the gene was determined. It encoded a protein consisting of 1,288 amino acids with a signal peptide of 35 amino acids. The enzyme purified from E. coli was a monomer with an M(r) of 142,000 +/- 2,000 and had same the catalytic and thermal characteristics as the native glycoprotein from T. saccharolyticum B6A. Linear alignment and the hydrophobic cluster analysis were used to compare this amylopullulanase with other amylolytic enzymes. Both methods revealed strictly conserved amino acid residues among these enzymes, and it is proposed that Asp-594, Asp-700, and Glu-623 are a putative catalytic triad of the T. saccharolyticum B6A-RI amylopullulanase.

  12. Carrier phases for iodine in the Allende meteorite and their associated Xe-129(r)/I-127 ratios - A laser microprobe study

    NASA Technical Reports Server (NTRS)

    Kirschbaum, C.

    1988-01-01

    This paper presents the results of a study of the carrier phases of iodine in the Allende meteorite and their associated Xe-129(r)/I-127 ratios, obtained using a new high-sensitivity low-blank mass spectrometer coupled with a low-blank laser extraction system. Two types of experiments were performed: a survey of the Xe-129(r) amounts in unirradiated specimens of fine-grained assemblages and individual coarse mineral grains, and a study of the relationship between chlorine and iodine in irradiated samples of the inclusions, in which the Xe-129(r)/I-127 ratios were determined for various minerals. As a by-product of these measurements, the Ar-40/Ar-39 ages were obtained along with some results on trapped Xe components. A schematic diagram of the new mass spectrometer system is included.

  13. Final report on COOMET.RI(II)-K2.Eu-152: Measurement of activity concentration of radionuclide Eu-152 in a solution (COOMET project no 423/RU/08)

    NASA Astrophysics Data System (ADS)

    Kharitonov, I. A.; Zanevsky, A. V.; Milevski, V.; Ivaniukovich, A.; Oropesa Verdecia, P.; Moreno León, Y.; Švec, A.

    2013-01-01

    The COOMET.RI(II)-K2.Eu-152 comparison of measurements of a standardized solution of Eu-152 has enabled the demonstration of the traceability to the SI of the national measurement standards of three national metrology institutes of the COOMET countries: BelGIM, CENTIS-DMR and SMU. The pilot laboratory is the D I Mendeleyev Institute for Metrology (VNIIM), which participated in the BIPM.RI(II)-K1.Eu-152 key comparison and will provide the link to evaluate the degrees of equivalence for these institutes. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  14. Chemical composition of the essential oil from Corsican Mentha aquatica--combined analysis by GC(RI), GC-MS and 13C NMR spectroscopy.

    PubMed

    Sutour, Sylvain; Tomi, Félix; Bradesi, Pascale; Casanova, Joseph

    2011-10-01

    The essential oil (EO) of M. aquatica L. growing wild in Corsica was isolated by dry vapor distillation and submitted to combined analysis by column chromatography over silica gel, GC(RI), GC-MS and 13C NMR spectroscopy. The composition was dominated byoxygenated monoterpenes and characterized by the occurrence of menthofuran (50.7%) as the major component. In parallel, seven laboratory-distilled oil samples isolated from individual plants collected in Corsica were analyzed by GC(RI) and 13C NMR spectroscopy. Onlyquantitative differences were observed between the samples. Beside the usual terpenes, various p-menthane lactones (mintlactone, isomintlactone, hydroxymintlactone, menthofurolactone and epimenthofurolactone) have been identified in all the oil samples.

  15. Beam-beam observations in the Relativistic Heavy Ion Collider

    SciTech Connect

    Luo, Y.; Fischer, W.; White, S.

    2015-06-24

    The Relativistic Heavy Ion Collider (RHIC) at Brookhaven National Laboratory has been operating since 2000. Over the past decade, thanks to the continuously increased bunch intensity and reduced β*s at the interaction points, the maximum peak luminosity in the polarized proton operation has been increased by more than two orders of magnitude. In this article, we first present the beam-beam observations in the previous RHIC polarized proton runs. Then we analyze the mechanisms for the beam loss and emittance growth in the presence of beam-beam interaction. The operational challenges and limitations imposed by beam-beam interaction and their remedies are also presented. In the end, we briefly introduce head-on beam-beam compensation with electron lenses in RHIC.

  16. Studies on Beam Formation in an Atomic Beam Source

    SciTech Connect

    Nass, A.; Steffens, E.; Stancari, M.

    2009-08-04

    Atomic beam sources (ABS) are widely used workhorses producing polarized atomic beams for polarized gas targets and polarized ion sources. Although they have been used for decades the understanding of the beam formation processes is crude. Models were used more or less successfully to describe the measured intensity and beam parameters. ABS's are also foreseen for future experiments, such as PAX [1]. An increase of intensity at a high polarization would be beneficial. A direct simulation Monte-Carlo method (DSMC)[2] was used to describe the beam formation of a hydrogen or deuterium beam in an ABS. For the first time a simulation of a supersonic gas expansion on a molecular level for this application was performed. Beam profile and Time-of-Flight measurements confirmed the simulation results. Furthermore a new method of beam formation was tested, the Carrier Jet method [3], based on an expanded beam surrounded by an over-expanded carrier jet.

  17. Lin- CD34hi CD117int/hi FcεRI+ cells in human blood constitute a rare population of mast cell progenitors.

    PubMed

    Dahlin, Joakim S; Malinovschi, Andrei; Öhrvik, Helena; Sandelin, Martin; Janson, Christer; Alving, Kjell; Hallgren, Jenny

    2016-01-28

    Mast cells are rare tissue-resident immune cells that are involved in allergic reactions, and their numbers are increased in the lungs of asthmatics. Murine lung mast cells arise from committed bone marrow-derived progenitors that enter the blood circulation, migrate through the pulmonary endothelium, and mature in the tissue. In humans, mast cells can be cultured from multipotent CD34(+) progenitor cells. However, a population of distinct precursor cells that give rise to mast cells has remained undiscovered. To our knowledge, this is the first report of human lineage-negative (Lin(-)) CD34(hi) CD117(int/hi) FcεRI(+) progenitor cells, which represented only 0.0053% of the isolated blood cells in healthy individuals. These cells expressed integrin β7 and developed a mast cell-like phenotype, although with a slow cell division capacity in vitro. Isolated Lin(-) CD34(hi) CD117(int/hi) FcεRI(+) blood cells had an immature mast cell-like appearance and expressed high levels of many mast cell-related genes as compared with human blood basophils in whole-transcriptome microarray analyses. Furthermore, serglycin, tryptase, and carboxypeptidase A messenger RNA transcripts were detected by quantitative reverse transcription-polymerase chain reaction. Altogether, we propose that the Lin(-) CD34(hi) CD117(int/hi) FcεRI(+) blood cells are closely related to human tissue mast cells and likely constitute an immediate precursor population, which can give rise to predominantly mast cells. Furthermore, asthmatics with reduced lung function had a higher frequency of Lin(-) CD34(hi) CD117(int/hi) FcεRI(+) blood mast cell progenitors than asthmatics with normal lung function.

  18. Variability in response to nicotine in the LSxSS RI strains: potential role of polymorphisms in alpha4 and alpha6 nicotinic receptor genes.

    PubMed

    Tritto, Theresa; Stitzel, Jerry A; Marks, Michael J; Romm, Elena; Collins, Allan C

    2002-04-01

    Several studies have shown that genetic factors influence the effects of nicotine on respiration, acoustic startle, Y-maze crosses and rears, heart rate and body temperature in the mouse. Recently, we identified restriction fragment length polymorphisms (RFLPs) associated with the alpha4 (Chrna4) and alpha6 (Chrna6) nicotinic cholinergic receptor genes in the recombinant inbred (RI) strains derived from the Long-Sleep (LS) and Short-Sleep (SS) mouse lines. The alpha4 polymorphism has been identified as a point-mutation at position 529 (threonine to alanine) and the alpha6 polymorphism has not yet been identified. The studies described here evaluated the potential role of these polymorphisms in regulating sensitivity to nicotine by constructing dose-response curves for the effects of nicotine on six responses in the LSxSS RI strains. The results obtained suggest that both of the polymorphisms may play a role in regulating variability in sensitivity to nicotine. Those RI strains carrying the LS-like alpha4 RFLP were significantly more sensitive to the effects of nicotine on Y-maze crosses and rears, temperature and respiration and were less sensitive to the effects of nicotine on acoustic startle than those strains carrying the SS-like alpha4 RFLP. Those RI strains carrying the LS-like alpha6 RFLP were more sensitive to the effects of nicotine on respiration and acoustic startle, and less sensitive to the effects of nicotine on Y-maze crosses than those strains carrying the SS-like alpha6 RFLP. These results suggest that genetically determined differences in sensitivity to nicotine may be explained, in part, by variability associated with at least two of the neuronal nicotinic receptor genes, alpha4 and alpha6.

  19. Pulsed electron beam precharger

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1990-01-01

    Electrostatic collection of a high resistivity aerosol using the Electron Beam Precipitator (EBP) collecting section was demonstrated during this reporting period (Quarter Five). Collection efficiency experiments were designed to confirm and extend some of the work performed under the previous contract. The reason for doing this was to attempt to improve upon the collection efficiency of the precipitator alone when testing with a very high resistivity, moderate-to-high concentration dust load. From the collector shakedown runs, a set of suitable operational parameters were determined for the downstream electrostatic collecting sections of the Electron Beam Precipitator wind tunnel. These parameters, along with those for the MINACC electron beam, will generally be held constant while the numerous precharging parameters are varied to produce an optimum particle charge. The electrostatic collector experiments were part of a larger, comprehensive investigation on electron beam precharging of high resistivity aerosol particles performed during the period covered by Quarters Five, Six, and Seven. This body of work used the same experimental apparatus and procedures and the experimental run period lasted nearly continuously for six months. A summary of the Quarter Five work is presented in the following paragraphs. Section II-A of TPR 5 contains a report on the continuing effort which was expended on the modification and upgrade of the pulsed power supply and the monitoring systems prior to the initiation of the electron beam precharging experimental work.

  20. ICFA Beam Dynamics Newsletter

    SciTech Connect

    Ben-Zvi I.; Kuczewski A.; Altinbas, Z.; Beavis, D.; Belomestnykh,; Dai, J. et al

    2012-07-01

    The Collider-Accelerator Department at Brookhaven National Laboratory is building a high-brightness 500 mA capable Energy Recovery Linac (ERL) as one of its main R&D thrusts towards eRHIC, the polarized electron - hadron collider as an upgrade of the operating RHIC facility. The ERL is in final assembly stages, with injection commisioning starting in October 2012. The objective of this ERL is to serve as a platform for R&D into high current ERL, in particular issues of halo generation and control, Higher-Order Mode (HOM) issues, coherent emissions for the beam and high-brightness, high-power beam generation and preservation. The R&D ERL features a superconducting laser-photocathode RF gun with a high quantum efficiency photoccathode served with a load-lock cathode delivery system, a highly damped 5-cell accelerating cavity, a highly flexible single-pass loop and a comprehensive system of beam instrumentation. In this ICFA Beam Dynamics Newsletter article we will describe the ERL in a degree of detail that is not usually found in regular publications. We will discuss the various systems of the ERL, following the electrons from the photocathode to the beam dump, cover the control system, machine protection etc and summarize with the status of the ERL systems.

  1. Ion Beam Simulator

    2005-11-08

    IBSimu(Ion Beam Simulator) is a computer program for making two and three dimensional ion optical simulations. The program can solve electrostatic field in a rectangular mesh using Poisson equation using Finite Difference method (FDM). The mesh can consist of a coarse and a fine part so that the calculation accuracy can be increased in critical areas of the geometry, while most of the calculation is done quickly using the coarse mesh. IBSimu can launch ionmore » beam trajectories into the simulation from an injection surface or fomo plasma. Ion beam space charge of time independent simulations can be taken in account using Viasov iteration. Plasma is calculated by compensating space charge with electrons having Boltzmann energy distribution. The simulation software can also be used to calculate time dependent cases if the space charge is not calculated. Software includes diagnostic tools for plotting the geometry, electric field, space charge map, ion beam trajectories, emittance data and beam profiles.« less

  2. Electron beam polarimetry

    NASA Astrophysics Data System (ADS)

    Sinclair, Charles K.

    1998-12-01

    Along with its well known charge and mass, the electron also carries an intrinsic angular momentum, or spin. The rules of quantum mechanics allow us to measure only the probability that the electron spin is in one of two allowed spin states. When a beam carries a net excess of electrons in one of these two allowed spin states, the beam is said to be polarized. The beam polarization may be measured by observing a sufficient number of electrons scattered by a spin-dependent interaction. For electrons, the useful scattering processes involve Coulomb scattering by heavy nuclei, or scattering from either polarized photons or other polarized electrons (known as Mott, Compton, and Mo/ller scattering, respectively). In this tutorial, we will briefly review how beam polarization is measured through a general scattering process, followed by a discussion of how the three scattering processes above are used to measure electron beam polarization. Descriptions of electron polarimeters based on the three scattering processes will be given.

  3. Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit

    PubMed Central

    Husain, Nilofer; Obranić, Sonja; Koscinski, Lukasz; Seetharaman, J.; Babić, Fedora; Bujnicki, Janusz M.; Maravić-Vlahoviček, Gordana; Sivaraman, J.

    2011-01-01

    NpmA, a methyltransferase that confers resistance to aminoglycosides was identified in an Escherichia coli clinical isolate. It belongs to the kanamycin–apramycin methyltransferase (Kam) family and specifically methylates the 16S rRNA at the N1 position of A1408. We determined the structures of apo-NpmA and its complexes with S-adenosylmethionine (AdoMet) and S-adenosylhomocysteine (AdoHcy) at 2.4, 2.7 and 1.68 Å, respectively. We generated a number of NpmA variants with alanine substitutions and studied their ability to bind the cofactor, to methylate A1408 in the 30S subunit, and to confer resistance to kanamycin in vivo. Residues D30, W107 and W197 were found to be essential. We have also analyzed the interactions between NpmA and the 30S subunit by footprinting experiments and computational docking. Helices 24, 42 and 44 were found to be the main NpmA-binding site. Both experimental and theoretical analyses suggest that NpmA flips out the target nucleotide A1408 to carry out the methylation. NpmA is plasmid-encoded and can be transferred between pathogenic bacteria; therefore it poses a threat to the successful use of aminoglycosides in clinical practice. The results presented here will assist in the development of specific NpmA inhibitors that could restore the potential of aminoglycoside antibiotics. PMID:21062819

  4. Focal adhesion molecule Kindlin-1 mediates activation of TGF-β signaling by interacting with TGF-βRI, SARA and Smad3 in colorectal cancer cells.

    PubMed

    Kong, Jinfeng; Du, Juan; Wang, Yunling; Yang, Mingzi; Gao, Jianchao; Wei, Xiaofan; Fang, Weigang; Zhan, Jun; Zhang, Hongquan

    2016-10-20

    Kindlin-1, an integrin-interacting protein, has been implicated in TGF-β/Smad3 signaling. However, the molecular mechanism underlying Kindlin-1 regulation of TGF-β/Smad3 signaling remains elusive. Here, we reported that Kindlin-1 is an important mediator of TGF-β/Smad3 signaling by showing that Kindlin-1 physically interacts with TGF-β receptor I (TβRI), Smad anchor for receptor activation (SARA) and Smad3. Kindlin-1 is required for the interaction of Smad3 with TβRI, Smad3 phosphorylation, nuclear translocation, and finally the activation of TGF-β/Smad3 signaling pathway. Functionally, Kindlin-1 promoted colorectal cancer (CRC) cell proliferation in vitro and tumor growth in vivo, and was also required for CRC cell migration and invasion via an epithelial to mesenchymal transition. Kindlin-1 was found to be increased with the CRC progression from stages I to IV. Importantly, raised expression level of Kindlin-1 correlates with poor outcome in CRC patients. Taken together, we demonstrated that Kindlin-1 promotes CRC progression by recruiting SARA and Smad3 to TβRI and thereby activates TGF-β/Smad3 signaling. Thus, Kindlin-1 is a novel regulator of TGF-β/Smad3 signaling and may also be a potential target for CRC therapeutics.

  5. Cloning and characterization of a highly reiterated 5.8-kilobase pair nucleolar EcoRI DNA fragment found in Novikoff hepatoma ascites cells.

    PubMed

    Parker, D L; Busch, H; Rothblum, L I

    1981-02-17

    The DNA of Novikoff hepatoma ascites cells was found to contain a 3.6-megadalton EcoRI restriction fragment, referred to as EcoRI fragment A (Parker et al., 1979). C0t analyses demonstrated an enrichment of fragment A sequences in Novikoff hepatoma genome relative to normal rat liver DNA. This fragment was cloned in lambda gtWES to determine its molecular structure and sequence organization. The DNA from a positive clone was labeled by nick translation and hybridized to a Southern blot of EcoRI digested Novikoff DNA. Distinct hybrids formed with the region corresponding to fragment A. The greater degree of hybridization to the nucleolar fraction suggested a nucleolar enrichment of fragment A. Fragment A has a PstI site approximately 300 base pairs from one terminus which was used to generate mono-5'-32P-labeled fragments. The larger PStI subfragment, 5500 base pairs, labeled at a single terminus, was used to evolve a restriction enzyme map. The 300 base pair fragment was partially sequenced, revealing the presence of a repetitive sequence "island", TT(GTCT)8(GAAT)5G-. C0t analysis, utilizing the purified clone as a probe, confirmed the enrichment of fragment A sequences in the tumor relative to the normal rat liver control.

  6. Beam Profile Monitor With Accurate Horizontal And Vertical Beam Profiles

    DOEpatents

    Havener, Charles C [Knoxville, TN; Al-Rejoub, Riad [Oak Ridge, TN

    2005-12-26

    A widely used scanner device that rotates a single helically shaped wire probe in and out of a particle beam at different beamline positions to give a pair of mutually perpendicular beam profiles is modified by the addition of a second wire probe. As a result, a pair of mutually perpendicular beam profiles is obtained at a first beamline position, and a second pair of mutually perpendicular beam profiles is obtained at a second beamline position. The simple modification not only provides more accurate beam profiles, but also provides a measurement of the beam divergence and quality in a single compact device.

  7. Grazing incidence beam expander

    SciTech Connect

    Akkapeddi, P.R.; Glenn, P.; Fuschetto, A.; Appert, Q.; Viswanathan, V.K.

    1985-01-01

    A Grazing Incidence Beam Expander (GIBE) telescope is being designed and fabricated to be used as an equivalent end mirror in a long laser resonator cavity. The design requirements for this GIBE flow down from a generic Free Electron Laser (FEL) resonator. The nature of the FEL gain volume (a thin, pencil-like, on-axis region) dictates that the output beam be very small. Such a thin beam with the high power levels characteristic of FELs would have to travel perhaps hundreds of meters or more before expanding enough to allow reflection from cooled mirrors. A GIBE, on the other hand, would allow placing these optics closer to the gain region and thus reduces the cavity lengths substantially. Results are presented relating to optical and mechanical design, alignment sensitivity analysis, radius of curvature analysis, laser cavity stability analysis of a linear stable concentric laser cavity with a GIBE. Fabrication details of the GIBE are also given.

  8. Acoustic tractor beam.

    PubMed

    Démoré, Christine E M; Dahl, Patrick M; Yang, Zhengyi; Glynne-Jones, Peter; Melzer, Andreas; Cochran, Sandy; MacDonald, Michael P; Spalding, Gabriel C

    2014-05-01

    Negative radiation forces act opposite to the direction of propagation, or net momentum, of a beam but have previously been challenging to definitively demonstrate. We report an experimental acoustic tractor beam generated by an ultrasonic array operating on macroscopic targets (>1 cm) to demonstrate the negative radiation forces and to map out regimes over which they dominate, which we compare to simulations. The result and the geometrically simple configuration show that the effect is due to nonconservative forces, produced by redirection of a momentum flux from the angled sides of a target and not by conservative forces from a potential energy gradient. Use of a simple acoustic setup provides an easily understood illustration of the negative radiation pressure concept for tractor beams and demonstrates continuous attraction towards the source, against a net momentum flux in the system. PMID:24836252

  9. Acoustic Tractor Beam

    NASA Astrophysics Data System (ADS)

    Démoré, Christine E. M.; Dahl, Patrick M.; Yang, Zhengyi; Glynne-Jones, Peter; Melzer, Andreas; Cochran, Sandy; MacDonald, Michael P.; Spalding, Gabriel C.

    2014-05-01

    Negative radiation forces act opposite to the direction of propagation, or net momentum, of a beam but have previously been challenging to definitively demonstrate. We report an experimental acoustic tractor beam generated by an ultrasonic array operating on macroscopic targets (>1 cm) to demonstrate the negative radiation forces and to map out regimes over which they dominate, which we compare to simulations. The result and the geometrically simple configuration show that the effect is due to nonconservative forces, produced by redirection of a momentum flux from the angled sides of a target and not by conservative forces from a potential energy gradient. Use of a simple acoustic setup provides an easily understood illustration of the negative radiation pressure concept for tractor beams and demonstrates continuous attraction towards the source, against a net momentum flux in the system.

  10. Beamed energy propulsion

    NASA Technical Reports Server (NTRS)

    Shoji, James M.

    1992-01-01

    Beamed energy concepts offer an alternative for an advanced propulsion system. The use of a remote power source reduces the weight of the propulsion system in flight and this, combined with the high performance, provides significant payload gains. Within the context of this study's baseline scenario, two beamed energy propulsion concepts are potentially attractive: solar thermal propulsion and laser thermal propulsion. The conceived beamed energy propulsion devices generally provide low thrust (tens of pounds to hundreds of pounds); therefore, they are typically suggested for cargo transportation. For the baseline scenario, these propulsion system can provide propulsion between the following nodes: (1) low Earth orbit to geosynchronous Earth orbit; (2) low Earth orbit to low lunar orbit; (3) low lunar orbit to low Mars orbit--only solar thermal; and (4) lunar surface to low lunar orbit--only laser thermal.

  11. Beam characteristics of energy-matched flattening filter free beams

    SciTech Connect

    Paynter, D.; Weston, S. J.; Cosgrove, V. P.; Evans, J. A.; Thwaites, D. I.

    2014-05-15

    Purpose: Flattening filter free (FFF) linear accelerators can increase treatment efficiency and plan quality. There are multiple methods of defining a FFF beam. The Elekta control system supports tuning of the delivered FFF beam energy to enable matching of the percentage depth-dose (PDD) of the flattened beam at 10 cm depth. This is compared to FFF beams where the linac control parameters are identical to those for the flattened beam. All beams were delivered on an Elekta Synergy accelerator with an Agility multi-leaf collimator installed and compared to the standard, flattened beam. The aim of this study is to compare “matched” FFF beams to both “unmatched” FFF beams and flattened beams to determine the benefits of matching beams. Methods: For the three modes of operation 6 MV flattened, 6 MV matched FFF, 6 MV unmatched FFF, 10 MV flattened, 10 MV matched FFF, and 10 MV unmatched FFF beam profiles were obtained using a plotting tank and were measured in steps of 0.1 mm in the penumbral region. Beam penumbra was defined as the distance between the 80% and 20% of the normalized dose when the inflection points of the unflattened and flattened profiles were normalized with the central axis dose of the flattened field set as 100%. PDD data was obtained at field sizes ranging from 3 cm × 3 cm to 40 cm × 40 cm. Radiation protection measurements were additionally performed to determine the head leakage and environmental monitoring through the maze and primary barriers. Results: No significant change is made to the beam penumbra for FFF beams with and without PDD matching, the maximum change in penumbra for a 10 cm × 10 cm field was within the experimental error of the study. The changes in the profile shape with increasing field size are most significant for the matched FFF beam, and both FFF beams showed less profile shape variation with increasing depth when compared to flattened beams, due to consistency in beam energy spectra across the radiation field

  12. Active Beam Spectroscopy

    NASA Astrophysics Data System (ADS)

    von Hellermann, M. G.; Delabie, E.; Jaspers, R. J. E.; Biel, W.; Marchuk, O.; Summers, H. P.; Whiteford, A.; Giroud, C.; Hawkes, N. C.; Zastrow, K. D.

    2008-03-01

    Charge eXchange Recombination Spectroscopy (CXRS) plays a pivotal role in the diagnostics of hot fusion plasmas and is implemented currently in most of the operating devices. In the present report the main features of CXRS are summarized and supporting software packages encompassing "Spectral Analysis Code CXSFIT", "Charge Exchange Analysis Package CHEAP", and finally "Forward Prediction of Spectral Features" are described. Beam Emission Spectroscopy (BES) is proposed as indispensable cross-calibration tool for absolute local impurity density measurements and also for the continuous monitoring of the neutral beam power deposition profile. Finally, a full exploitation of the `Motional Stark Effect' pattern is proposed to deduce local pitch angles, total magnetic fields and possibly radial electric fields. For the proposed active beam spectroscopy diagnostic on ITER comprehensive performance studies have been carried out. Estimates of expected spectral signal-to-noise ratios are based on atomic modelling of neutral beam stopping and emissivities for CXRS, BES and background continuum radiation as well as extrapolations from present CXRS diagnostic systems on JET, Tore Supra, TEXTOR and ASDEX-UG. Supplementary to thermal features a further promising application of CXRS has been proposed recently for ITER, that is a study of slowing-down alpha particles in the energy range up to 2 MeV making use of the 100 keV/amu DNB (Diagnostic Neutral Beam) and the 500 keV/amu HNB (Heating Neutral Beam). Synthetic Fast Ion Slowing-Down spectra are evaluated in terms of source rates and slowing-down parameters

  13. Optimal beam focusing through turbulence.

    PubMed

    Charnotskii, Mikhail

    2015-11-01

    Beam spread and beam wandering are the most perceptible effects of atmospheric turbulence on propagating laser beams. The width of the mean irradiance profile is typically used to characterize the beam spread. This so-called long-term (LT) statistic allows for a relatively simple theoretical description. However, the LT beam size is not a very practical measure of the beam spread because its measurements are sensitive to the movements of the source and detector, and to the large-scale variations of the refractive index that are not associated with turbulence. The short-term (ST) beam spread is measured relative to the instantaneous position of the beam center and is free of these drawbacks, but has not been studied as thoroughly as the LT spread. We present a theoretical model for the ST beam irradiance that is based on the parabolic equation for the beam wave propagation in random media, and the Markov approximation for calculation of the statistics of the optical field, and discuss an approximation that allows introduction of the isoplanatic ST point spread function (PSF). Unlike the LT PSF, the ST PSF depends on the overall beam geometry. This allows optimization of the initial beam field in terms of minimizing the ST beam size at the observation plane. Calculations supporting this conjecture are presented for the simple case of the coherent Gaussian beam, and Kolmogorov turbulence.

  14. Optimal beam focusing through turbulence.

    PubMed

    Charnotskii, Mikhail

    2015-11-01

    Beam spread and beam wandering are the most perceptible effects of atmospheric turbulence on propagating laser beams. The width of the mean irradiance profile is typically used to characterize the beam spread. This so-called long-term (LT) statistic allows for a relatively simple theoretical description. However, the LT beam size is not a very practical measure of the beam spread because its measurements are sensitive to the movements of the source and detector, and to the large-scale variations of the refractive index that are not associated with turbulence. The short-term (ST) beam spread is measured relative to the instantaneous position of the beam center and is free of these drawbacks, but has not been studied as thoroughly as the LT spread. We present a theoretical model for the ST beam irradiance that is based on the parabolic equation for the beam wave propagation in random media, and the Markov approximation for calculation of the statistics of the optical field, and discuss an approximation that allows introduction of the isoplanatic ST point spread function (PSF). Unlike the LT PSF, the ST PSF depends on the overall beam geometry. This allows optimization of the initial beam field in terms of minimizing the ST beam size at the observation plane. Calculations supporting this conjecture are presented for the simple case of the coherent Gaussian beam, and Kolmogorov turbulence. PMID:26560908

  15. Diamonds for beam instrumentation

    SciTech Connect

    Griesmayer, Erich

    2013-04-19

    Diamond is perhaps the most versatile, efficient and radiation tolerant material available for use in beam detectors with a correspondingly wide range of applications in beam instrumentation. Numerous practical applications have demonstrated and exploited the sensitivity of diamond to charged particles, photons and neutrons. In this paper, a brief description of a generic diamond detector is given and the interaction of the CVD diamond detector material with protons, electrons, photons and neutrons is presented. Latest results of the interaction of sCVD diamond with 14 MeV mono-energetic neutrons are shown.

  16. Dealing with megawatt beams

    SciTech Connect

    Mokhov, N.V.; /Fermilab

    2010-08-01

    The next generation of accelerators for MegaWatt proton, electron and heavy-ion beams puts unprecedented requirements on the accuracy of particle production predictions, the capability and reliability of the codes used in planning new accelerator facilities and experiments, the design of machine, target and collimation systems, detectors and radiation shielding and minimization of their impact on environment. Recent advances in code developments are described for the critical modules related to these challenges. Examples are given for the most demanding areas: targets, collimators, beam absorbers, radiation shielding, induced radioactivity and radiation damage.

  17. Gaussian-profile beams

    SciTech Connect

    Lee, E.P.

    1982-11-03

    The growth rate of the hose instability is derived for a beam with Gaussian radial profile, using the spread mass model of phase mix damping. It is found that the maximum growth rate of a convecting wave packet is 49% larger than that derived for a beam with the Bennett profile, and the inverse group velocity (dz/d tau) is also increased by about this amount. A general discussion of spread mass models is presented along with an explanation of the regurgitation phenomena seen in their numerical treatment.

  18. Nonpropulsive applications of ion beams

    NASA Technical Reports Server (NTRS)

    Hudson, W. R.

    1976-01-01

    Eight centimeter ion beam sources utilizing xenon and argon have been developed that operate over a wide range of beam energies and currents. Three types of processes have been studied: sputter deposition, ion beam machining, and ion beam surface texturing. The broad range of source operating conditions allows optimum sputter deposition of various materials. An ion beam source was used to ion mill laser reflection holograms using photoresist patterns on silicon. Ion beam texturing was tried with many materials and has a multitude of potential applications.

  19. Tractor beams for optical micromanipulation

    NASA Astrophysics Data System (ADS)

    Yevick, Aaron; Grier, David G.

    2016-03-01

    Tractor beams are traveling waves that transport illuminated objects in the retrograde direction relative to the direction of propagation. The theory of photokinetic effects identifies design criteria for long-range general- purpose tractor beams. These criteria distinguish first-order tractor beams that couple to induced dipole moments from higher-order tractor beams that rely on coupling to higher-order multipole moments to achieve pulling. First-order tractor beams are inherently longer-ranged and operate on a wider variety of materials. We explore the physics of first-order tractor beams in the context of a family of generalized solenoidal waves.

  20. The cooling of particle beams

    SciTech Connect

    Sessler, A.M.

    1994-10-01

    A review is given of the various methods which can be employed for cooling particle beams. These methods include radiation damping, stimulated radiation damping, ionization cooling, stochastic cooling, electron cooling, laser cooling, and laser cooling with beam coupling. Laser Cooling has provided beams of the lowest temperatures, namely 1 mK, but only for ions and only for the longitudinal temperature. Recent theoretical work has suggested how laser cooling, with the coupling of beam motion, can be used to reduce the ion beam temperature in all three directions. The majority of this paper is devoted to describing laser cooling and laser cooling with beam coupling.

  1. The molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory: The DEC-RI-MP2 gradient.

    PubMed

    Bykov, Dmytro; Kristensen, Kasper; Kjærgaard, Thomas

    2016-07-14

    We report an implementation of the molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory (DEC-RI-MP2). The new DEC-RI-MP2 gradient method combines the precision control as well as the linear-scaling and massively parallel features of the DEC scheme with efficient evaluations of the gradient contributions using the RI approximation. We further demonstrate that the DEC-RI-MP2 gradient method is capable of calculating molecular gradients for very large molecular systems. A test set of supramolecular complexes containing up to 158 atoms and 1960 contracted basis functions has been employed to demonstrate the general applicability of the DEC-RI-MP2 method and to analyze the errors of the DEC approximation. Moreover, the test set contains molecules of complicated electronic structures and is thus deliberately chosen to stress test the DEC-RI-MP2 gradient implementation. Additionally, as a showcase example the full molecular gradient for insulin (787 atoms and 7604 contracted basis functions) has been evaluated. PMID:27421396

  2. The molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory: The DEC-RI-MP2 gradient

    NASA Astrophysics Data System (ADS)

    Bykov, Dmytro; Kristensen, Kasper; Kjærgaard, Thomas

    2016-07-01

    We report an implementation of the molecular gradient using the divide-expand-consolidate resolution of the identity second-order Møller-Plesset perturbation theory (DEC-RI-MP2). The new DEC-RI-MP2 gradient method combines the precision control as well as the linear-scaling and massively parallel features of the DEC scheme with efficient evaluations of the gradient contributions using the RI approximation. We further demonstrate that the DEC-RI-MP2 gradient method is capable of calculating molecular gradients for very large molecular systems. A test set of supramolecular complexes containing up to 158 atoms and 1960 contracted basis functions has been employed to demonstrate the general applicability of the DEC-RI-MP2 method and to analyze the errors of the DEC approximation. Moreover, the test set contains molecules of complicated electronic structures and is thus deliberately chosen to stress test the DEC-RI-MP2 gradient implementation. Additionally, as a showcase example the full molecular gradient for insulin (787 atoms and 7604 contracted basis functions) has been evaluated.

  3. High intensity muon beam source for neutrino beam experiments

    NASA Astrophysics Data System (ADS)

    Kamal Sayed, Hisham

    2015-09-01

    High intensity muon beams are essential for Muon accelerators like Neutrino Factories and Muon Colliders. In this study we report on a global optimization of the muon beam production and capture based on end-to-end simulations of the Muon Front End. The study includes the pion beam production target geometry, capture field profile, and forming muon beam into microbunches for further acceleration. The interplay between the transverse and longitudinal beam dynamics during the capture and transport of muon beam is evaluated and discussed. The goal of the optimization is to provide a set of design parameters that delivers high intensity muon beam that could be fit within the acceptance of a muon beam accelerator.

  4. EFFECTS OF TRANSFERSE BEAM SIZE IN BEAM POSITIONS MONITORS

    SciTech Connect

    S.S. KURENNOY

    2001-06-01

    The fields produced by a long beam with a given transverse charge distribution in a homogeneous vacuum chamber are studied. Signals induced by the displaced finite-size beam on electrodes of a beam position monitor (BPM) are calculated and compared to those from a pencil beam. The non-linearities and corrections to BPM signals due to a finite transverse beam size are calculated for an arbitrary chamber cross section. Simple analytical expressions are given for a few particular transverse distributions of the beam current in a circular or rectangular chamber. Of particular interest is a general proof that in an arbitrary homogeneous chamber the beam-size corrections vanish for any axisymmetric beam current distribution.

  5. Effects of transverse beam size in beam position monitors.

    SciTech Connect

    Kurennoy, S.

    2001-01-01

    The fields produced by a long beam with a given transverse charge distribution in a homogeneous vacuum chamber are studied. Signals induced by the displaced finite-size beam on electrodes of a beam position monitor (BPM) are calculated and compared to those from a pencil beam. The non-linearities and corrections to BPM signals due to a finite transverse beam size are calculated for an arbitrary chamber cross section. Simple analytical expressions are given for a few particular transverse distributions of the beam current in a circular or rectangular chamber. Of particular interest is a general proof that in an arbitrary homogeneous chamber the beam-size corrections vanish for any axisymmetric beam current distribution.

  6. EURAMET supplementary comparison of the personal dose equivalent quantity for photon radiation: EURAMET.RI(I)-S5

    NASA Astrophysics Data System (ADS)

    Ankerhold, U.; Hupe, O.

    2012-01-01

    Comparison measurements among primary standard facilities are required to achieve quality assurance in the realization and transfer of the quantity of personal dose equivalent, Hp(10), for photon radiation by national standards laboratories. Although some bilateral comparisons for this quantity had already taken place, in May 2003 the Consultative Committee for Ionizing Radiation [CCRI(I)] decided that a EUROMET supplementary comparison would be appropriate and that primary standards laboratories from other Regional Metrology Organizations could participate. The first comparison of the radiation protection quantity Hp(10) with low energy x-rays started in January 2004 and was completed in December 2007. The comparison was piloted by the PTB as EUROMET project No. 738 known also as EUROMET.RI(I)-S5. The operation and results of the comparison are reported here. The transfer instrument consisted of a secondary standard ionization chamber and a complete electronic measuring device. The response of this transfer instrument in various photon reference fields (N-15 and 0°, N-20 and 45°, N-30 and 75°, N-60 and 0°, N-120 and 0°, radiation quality according to ISO 4037-1:1996 [1]) was compared. Measurements were made by participants in 17 countries: Austria, France, Czech Republic, Finland, Germany, Greece, Hungary, Norway, Portugal, Slovakia, Slovenia, Spain, Sweden, Switzerland, the Netherlands, the United Kingdom and by one international organization. The results obtained by most of the participants are consistent with the stated uncertainties. Main text. To reach the main text of this paper, click on Final Report. Note that this text is that which appears in Appendix B of the BIPM key comparison database kcdb.bipm.org/. The final report has been peer-reviewed and approved for publication by the CCRI, according to the provisions of the CIPM Mutual Recognition Arrangement (CIPM MRA).

  7. Stable isotope behavior during cave ice formation by water freezing in Scărişoara Ice Cave, Romania

    NASA Astrophysics Data System (ADS)

    PerşOiu, Aurel; Onac, Bogdan P.; Wynn, Jonathan G.; Bojar, Ana-Voica; Holmgren, Karin

    2011-01-01

    Recently, a series of studies have targeted the stable isotopic composition of cave ice as a possible source of paleoclimatic information, but none presented an explanation for the way in which the external climatic signal is transferred to cave ice. While the relation between the stable isotopic composition of precipitation and drip water can be relatively easily determined, a more complex problem arises, i.e., the possible alteration of the primary climatic signal recorded by the oxygen and hydrogen stable isotopes during the freezing of water to form cave ice. Here we report the results of the first detailed investigations of the oxygen and hydrogen stable isotope behavior during the formation of ice in Scărişoara Ice Cave. Samples of ice align on a straight line with a slope lower than 8 in a δ18O-δ2H plot, characteristic for ice formed by the freezing of water. A model is presented for the reconstruction of the initial isotopic composition of water, despite the complexity induced by kinetic effects during early stages of freezing. These results are consistent with ice that forms by the downward freezing of a stagnant pool of water, under kinetic conditions in the initial stages of the process, and isotopic equilibrium thereafter. As ice caves are described in many parts of the world, otherwise poorly represented in ice-based paleoclimatology, the results of this study could open a new direction in paleoclimatic research so that an array of significant paleoclimate data can be developed on the basis of their study.

  8. Acidic environment augments FcεRI-mediated production of IL-6 and IL-13 in mast cells

    SciTech Connect

    Kamide, Yosuke; Ishizuka, Tamotsu; Tobo, Masayuki; Tsurumaki, Hiroaki; Aoki, Haruka; Mogi, Chihiro; Nakakura, Takashi; Yatomi, Masakiyo; Ono, Akihiro; Koga, Yasuhiko; Sato, Koichi; Hisada, Takeshi; Dobashi, Kunio; Yamada, Masanobu; Okajima, Fumikazu

    2015-08-28

    Although blood pH is maintained in a narrow range of around pH 7.4 in living organisms, inflammatory loci are characterized by acidic conditions. Mast cells tend to reside close to the surface of the body in areas such as the mucosa and skin where they may be exposed to exogenous acids, and they play an important role in immune responses. However, little is known about the effects of extracellular acidification on the functions of mast cell. Here, we found that extracellular acidification increased the dinitrophenyl-conjugated human serum albumin (DNP-HSA)-induced production of interleukin (IL)-6 and IL-13 in MC/9 cells or bone marrow-derived mouse mast cells sensitized with anti-DNP IgE. Extracellular acidification also inhibited migration of MC/9 cells toward DNP-HSA. In addition, acidic pH stimulated antigen-induced activation of p38 mitogen-activated protein kinase (MAPK) and protein kinase B (Akt). These findings suggest that extracellular acidification augmented antigen/IgE-induced and FcεRI-mediated production of IL-6 and IL-13 in mast cells, and that this was associated with the enhancement of p38 MAPK and Akt activation. - Highlights: • Antigen-induced IL-6 and IL-13 production was augmented by acidic pH in mast cells. • Acidic pH-induced actions were associated with activation of p38 MAPK and Akt. • Inhibition of p38 MAPK and Akt attenuated cytokine responses to acidic pH. • Acidic pH effects are not attributable to actions of known proton-sensing GPCRs.

  9. TGF-β-RI Kinase Inhibitor SD-208 Reduces the Development and Progression of Melanoma Bone Metastases

    PubMed Central

    Mohammad, Khalid S.; Javelaud, Delphine; Fournier, Pierrick G. J.; Niewolna, Maria; McKenna, C. Ryan; Peng, Xiang H.; Duong, Vu; Dunn, Lauren K.; Mauviel, Alain; Guise, Theresa A.

    2010-01-01

    Melanoma often metastasizes to bone where it is exposed to high concentrations of TGF-β. Constitutive Smad signaling occurs in human melanoma. Because TGF-β promotes metastases to bone by several types of solid tumors including breast cancer, we hypothesized that pharmacologic blockade of the TGF-β signaling pathway may interfere with the capacity of melanoma cells to metastasize to bone. In this study, we tested the effect of a small molecule inhibitor of TGF-β receptor I kinase (TβRI), SD-208, on various parameters affecting the development and progression of melanoma, both in vitro and in a mouse model of human melanoma bone metastasis. In melanoma cell lines, SD-208 blocked TGF-β induction of Smad3 phosphorylation, Smad3/4-specific transcription, Matrigel invasion and expression of the TGF-β target genes PTHrP, IL-11, CTGF and RUNX2. To assess effects of SD-208 on melanoma development and metastasis, nude mice were inoculated with 1205Lu melanoma cells into the left cardiac ventricle and drug was administered by oral gavage on prevention or treatment protocols. SD-208 (60mg/kg/day), started 2 days before tumor inoculation prevented the development of osteolytic bone metastases compared with vehicle. In mice with established bone metastases, the size of osteolytic lesions was significantly reduced after 4 weeks treatment with SD-208 compared to vehicle-treated mice. Our results demonstrate that therapeutic targeting of TGF-β may prevent the development of melanoma bone metastases and decrease the progression of established osteolytic lesions. PMID:21084275

  10. Evaluation of SD-208, a TGF-β-RI Kinase Inhibitor, as an Anticancer Agent in Retinoblastoma.

    PubMed

    Fadakar, Puran; Akbari, Abolfazl; Ghassemi, Fariba; Mobini, Gholam Reza; Mohebi, Masoumeh; Bolhassani, Manzar; Abed Khojasteh, Hoda; Heidari, Mansour

    2016-06-01

    Retinoblastoma is the most common intraocular tumor in children resulting from genetic alterations and transformation of mature retinal cells. The objective of this study was to investigate the effects of SD-208, TGF-β-RI kinase inhibitor, on the expression of some miRNAs including a miR-17/92 cluster in retinoblastoma cells. Prior to initiate this work, the cell proliferation was studied by Methyl Thiazolyl Tetrazolium (MTT) and bromo-2'-deoxyuridine (BrdU) assays. Then, the expression patterns of four miRNAs (18a, 20a, 22, and 34a) were investigated in the treated SD-208 (0.0, 1, 2 and 3 µM) and untreated Y-79 cells. A remarkable inhibition of the cell proliferation was found in Y-79 cells treated with SD-208 versus untreated cells. Also, the expression changes were observed in miRNAs 18a, 20a, 22 and 34a in response to SD-208 treatment (P<0.05). The findings of the present study suggest that the anti-cancer effect of SD-208 may be exerted due to the regulation of specific miRNAs, at least in this particular retinoblastoma cell line. To the best of the researchers' knowledge, this is the first report demonstrating that the SD-208 could alter the expression of tumor suppressive miRNAs as well as oncomiRs in vitro. In conclusion, the present data suggest that SD-208 could be an alternative agent in retinoblastoma treatment. PMID:27306340

  11. Sugars profiles of different chestnut (Castanea sativa Mill.) and almond (Prunus dulcis) cultivars by HPLC-RI.

    PubMed

    Barreira, João C M; Pereira, José Alberto; Oliveira, M Beatriz P P; Ferreira, Isabel C F R

    2010-03-01

    Sugar profiles of different almond and chestnut cultivars were obtained by high-performance liquid chromatography (HPLC), by means of a refractive index (RI) detector. A solid-liquid extraction procedure was used in defatted and dried samples. The chromatographic separation was achieved using a Eurospher 100-5 NH(2) column using an isocratic elution with acetonitrile/water (70:30, v/v) at a flow rate of 1.0 ml/min. All the compounds were separated in 16 min. The method was optimized and proved to be reproducible and accurate. Generally, more than 95% of sugars were identified for both matrixes. Sugars profiles were quite homogeneous for almond cultivars; sucrose was the main sugar (11.46 +/- 0.14 in Marcona to 22.23 +/- 0.59 in Ferragnes g/100 g of dried weight), followed by raffinose (0.71 +/- 0.05 in Ferraduel to 2.11 +/- 0.29 in Duro Italiano), glucose (0.42 +/- 0.12 in Pegarinhos two seeded to 1.47 +/- 0.19 in Ferragnes) and fructose (0.11 +/- 0.02 in Pegarinhos two seeded to 0.59 +/- 0.05 in Gloriette). Commercial cultivars proved to have higher sucrose contents, except in the case of Marcona. Nevertheless, chestnut cultivars revealed a high heterogeneity. Sucrose was the main sugar in Aveleira (22.05 +/- 1.48), Judia (23.30 +/- 0.83) and Longal (9.56 +/- 0.91), while glucose was slightly prevalent in Boa Ventura (6.63 +/- 0.49). The observed variance could serve for inter-cultivar discrimination.

  12. Impact of Stratification on Summer Hypoxia in Narragansett Bay, RI: Time-Series Observations and Numerical Modeling

    NASA Astrophysics Data System (ADS)

    Bergondo, D. L.; Kincaid, C. R.; Kester, D. R.

    2003-12-01

    Determining water column structure in a partially-mixed estuary, such as Narragansett Bay, is important for understanding the impact stratification has on phytoplankton productivity and dissolved oxygen concentrations. Stratification reduces vertical mixing and influences the vertical flux of ecologically important variables such as phytoplankton, heat, oxygen, and nutrients. We utilize a combination of buoy data and numerical modeling to better understand processes surrounding the evolution and breakdown in stratification in Narragansett Bay for a range of environmental conditions. Autonomous sensors have been deployed in Narragansett Bay to collect continuous high temporal resolution chemical and hydrographic data. Data were collected every fifteen minutes 0.5 m below the surface and 1 m from the bottom from July 2001 to December 2001 and from July 2002 to December 2002 at two locations in Narragansett Bay and the Providence River, RI. The suite of water column variables measured were surface and bottom temperature, salinity, dissolved oxygen and pH, and surface chlorophyll. Results show that stratification events occur intermittently in the Providence River and Narragansett Bay and that increased phytoplankton productivity and hypoxia were associated with summertime stratification events. The Regional Ocean Modeling System (ROMS) model, a three-dimensional hydrodynamic model developed by Rutgers University, New Jersey, has been applied to Narragansett Bay to determine how the basic layered flow can be perturbed by runoff events and variable winds. For instance, in the basic stratified flow pattern in Narragansett Bay there is an outward flow of fresher water at the surface and an inward flow of deep denser water within the channel, however, strong south winds shutdown the deep return flow. Time series observations combined with model relationships have been able to enhance the understanding of the development and breakdown of stratification and the impact

  13. Optimizing the electron beam parameters for head-on beam-beam compensation in RHIC

    SciTech Connect

    Luo, Y.; Fischer, W.; Pikin, A.; Gu, X.

    2011-03-28

    Head-on beam-beam compensation is adopted to compensate the large beam-beam tune spread from the protonproton interactions at IP6 and IP8 in the Relativistic Heavy Ion Collider (RHIC). Two e-lenses are being built and to be in stalled near IP10 in the end of 2011. In this article we perform numeric simulation to investigate the effect of the electron beam parameters on the proton dynamics. The electron beam parameters include its transverse profile, size, current, offset and random errors in them. In this article we studied the effect of the electron beam parameters on the proton dynamics. The electron beam parameters include its transverse shape, size, current, offset and their random errors. From the study, we require that the electron beam size can not be smaller than the proton beam's. And the random noise in the electron current should be better than 0.1%. The offset of electron beam w.r.t. the proton beam center is crucial to head-on beam-beam compensation. Its random errors should be below {+-}8{micro}m.

  14. Recycled Paper Beam Sculpture

    ERIC Educational Resources Information Center

    Keller, Kristin; Tabacchi, Jo

    2011-01-01

    As art department budgets across the country continue to shrink, art teachers are increasingly on the lookout for inexpensive materials that can be used to teach a range of concepts. In this article, the authors describe a newspaper beam tower project inspired by the book, "The Wonderful Towers of Watts" by Patricia Zelver. There are many more…

  15. Pulsed electron beam precharger

    SciTech Connect

    Finney, W.C.; Shelton, W.N.

    1991-01-01

    During the previous reporting period (Quarter Six), the charging and removal of a fine, high resistivity aerosol using the advanced technology of electron beam precipitation was successfully accomplished. Precharging a dust stream circulating through the EBP wind tunnel produced collection efficiency figures of up to 40 times greater than with corona charging and collection alone (Table 1). The increased system collection efficiency attributed to electron beam precharging was determined to be the result of increased particle charge. It was found that as precharger electric field was raised, collection efficiency became greater. In sequence, saturation particle charge varies with the precharger electric field strength, particle migration velocity varies with the precharger and collector electric field, and collection efficiency varies with the migration velocity. Maximizing the system collection efficiency requires both a high charging electric field (provided by the E-beam precharger), and a high collecting electric field (provided by the collector wires and plates). Because increased particle collection efficiency is directly attributable to higher particle charge, the focus of research during Quarter Seven was shifted to learning more about the actual charge magnitude on the aerosol particles. Charge determinations in precipitators have traditionally been made on bulk dust samples collected from the flue gas stream, which gives an overall charge vs. mass (Q/M) ratio measurement. More recently, techniques have been developed which allow the measurement of the charge on individual particles in a rapid and repeatable fashion. One such advanced technique has been developed at FSU for use in characterizing the electron beam precharger.

  16. Beam current sensor

    DOEpatents

    Kuchnir, M.; Mills, F.E.

    1984-09-28

    A current sensor for measuring the dc component of a beam of charged particles employs a superconducting pick-up loop probe, with twisted superconducting leads in combination with a Superconducting Quantum Interference Device (SQUID) detector. The pick-up probe is in the form of a single-turn loop, or a cylindrical toroid, through which the beam is directed and within which a first magnetic flux is excluded by the Meisner effect. The SQUID detector acts as a flux-to-voltage converter in providing a current to the pick-up loop so as to establish a second magnetic flux within the electrode which nulls out the first magnetic flux. A feedback voltage within the SQUID detector represents the beam current of the particles which transit the pick-up loop. Meisner effect currents prevent changes in the magnetic field within the toroidal pick-up loop and produce a current signal independent of the beam's cross-section and its position within the toroid, while the combination of superconducting elements provides current measurement sensitivities in the nano-ampere range.

  17. Beam current sensor

    DOEpatents

    Kuchnir, Moyses; Mills, Frederick E.

    1987-01-01

    A current sensor for measuring the DC component of a beam of charged particles employs a superconducting pick-up loop probe, with twisted superconducting leads in combination with a Superconducting Quantum Interference Device (SQUID) detector. The pick-up probe is in the form of a single-turn loop, or a cylindrical toroid, through which the beam is directed and within which a first magnetic flux is excluded by the Meisner effect. The SQUID detector acts as a flux-to-voltage converter in providing a current to the pick-up loop so as to establish a second magnetic flux within the electrode which nulls out the first magnetic flux. A feedback voltage within the SQUID detector represents the beam current of the particles which transit the pick-up loop. Meisner effect currents prevent changes in the magnetic field within the toroidal pick-up loop and produce a current signal independent of the beam's cross-section and its position within the toroid, while the combination of superconducting elements provides current measurement sensitivites in the nano-ampere range.

  18. Pulsed ion beam source

    DOEpatents

    Greenly, J.B.

    1997-08-12

    An improved pulsed ion beam source is disclosed having a new biasing circuit for the fast magnetic field. This circuit provides for an initial negative bias for the field created by the fast coils in the ion beam source which pre-ionize the gas in the source, ionize the gas and deliver the gas to the proper position in the accelerating gap between the anode and cathode assemblies in the ion beam source. The initial negative bias improves the interaction between the location of the nulls in the composite magnetic field in the ion beam source and the position of the gas for pre-ionization and ionization into the plasma as well as final positioning of the plasma in the accelerating gap. Improvements to the construction of the flux excluders in the anode assembly are also accomplished by fabricating them as layered structures with a high melting point, low conductivity material on the outsides with a high conductivity material in the center. 12 figs.

  19. Ion-beam technologies

    SciTech Connect

    Fenske, G.R.

    1993-01-01

    This compilation of figures and diagrams reviews processes for depositing diamond/diamond-like carbon films. Processes addressed are chemical vapor deposition (HFCVD, PACVD, etc.), plasma vapor deposition (plasma sputtering, ion beam sputtering, evaporation, etc.), low-energy ion implantation, and hybrid processes (biased sputtering, IBAD, biased HFCVD, etc.). The tribological performance of coatings produced by different means is discussed.

  20. The Technology Balance Beam

    ERIC Educational Resources Information Center

    Coulson, Eddie K.

    2006-01-01

    "The Technology Balance Beam" is designed to question the role of technology within school districts. This case study chronicles a typical school district in relation to the school district's implementation of technology beginning in the 1995-1996 school year. The fundamental question that this scenario raises is, What is the balance between…