The 3D Euler solutions using automated Cartesian grid generation
NASA Technical Reports Server (NTRS)
Melton, John E.; Enomoto, Francis Y.; Berger, Marsha J.
1993-01-01
Viewgraphs on 3-dimensional Euler solutions using automated Cartesian grid generation are presented. Topics covered include: computational fluid dynamics (CFD) and the design cycle; Cartesian grid strategy; structured body fit; grid generation; prolate spheroid; and ONERA M6 wing.
Development and application of a 3D Cartesian grid Euler method
NASA Technical Reports Server (NTRS)
Melton, John E.; Aftosmis, Michael J.; Berger, Marsha J.; Wong, Michael D.
1995-01-01
This report describes recent progress in the development and application of 3D Cartesian grid generation and Euler flow solution techniques. Improvements to flow field grid generation algorithms, geometry representations, and geometry refinement criteria are presented, including details of a procedure for correctly identifying and resolving extremely thin surface features. An initial implementation of automatic flow field refinement is also presented. Results for several 3D multi-component configurations are provided and discussed.
3D Euler flow solutions using unstructured Cartesian and prismatic grids
NASA Technical Reports Server (NTRS)
Melton, John E.; Pandya, Shishir A.; Steger, Joseph L.
1993-01-01
A hyperbolic prismatic grid generation technique is combined with a background Cartesian grid for the study of inviscid three-dimensional flows. The mathematics of the hyperbolic prismatic grid generation algorithm are described, and some simple inviscid demonstration cases are presented. By combining the simplicity of the Cartesian background grid with the geometric flexibility and computational efficiencies inherent to prismatic grids, this approach shows promise for improving computational aerodynamic simulations.
Tensor decomposition in electronic structure calculations on 3D Cartesian grids
Khoromskij, B.N. Khoromskaia, V.; Chinnamsetty, S.R.; Flad, H.-J.
2009-09-01
In this paper, we investigate a novel approach based on the combination of Tucker-type and canonical tensor decomposition techniques for the efficient numerical approximation of functions and operators in electronic structure calculations. In particular, we study applicability of tensor approximations for the numerical solution of Hartree-Fock and Kohn-Sham equations on 3D Cartesian grids. We show that the orthogonal Tucker-type tensor approximation of electron density and Hartree potential of simple molecules leads to low tensor rank representations. This enables an efficient tensor-product convolution scheme for the computation of the Hartree potential using a collocation-type approximation via piecewise constant basis functions on a uniform nxnxn grid. Combined with the Richardson extrapolation, our approach exhibits O(h{sup 3}) convergence in the grid-size h=O(n{sup -1}). Moreover, this requires O(3rn+r{sup 3}) storage, where r denotes the Tucker rank of the electron density with r=O(logn), almost uniformly in n. For example, calculations of the Coulomb matrix and the Hartree-Fock energy for the CH{sub 4} molecule, with a pseudopotential on the C atom, achieved accuracies of the order of 10{sup -6} hartree with a grid-size n of several hundreds. Since the tensor-product convolution in 3D is performed via 1D convolution transforms, our scheme markedly outperforms the 3D-FFT in both the computing time and storage requirements.
NASA Astrophysics Data System (ADS)
Polkowski, Marcin
2016-04-01
Seismic wave travel time calculation is the most common numerical operation in seismology. The most efficient is travel time calculation in 1D velocity model - for given source, receiver depths and angular distance time is calculated within fraction of a second. Unfortunately, in most cases 1D is not enough to encounter differentiating local and regional structures. Whenever possible travel time through 3D velocity model has to be calculated. It can be achieved using ray calculation or time propagation in space. While single ray path calculation is quick it is complicated to find the ray path that connects source with the receiver. Time propagation in space using Fast Marching Method seems more efficient in most cases, especially when there are multiple receivers. In this presentation a Python module pySeismicFMM is presented - simple and very efficient tool for calculating travel time from sources to receivers. Calculation requires regular 2D or 3D velocity grid either in Cartesian or geographic coordinates. On desktop class computer calculation speed is 200k grid cells per second. Calculation has to be performed once for every source location and provides travel time to all receivers. pySeismicFMM is free and open source. Development of this tool is a part of authors PhD thesis. National Science Centre Poland provided financial support for this work via NCN grant DEC-2011/02/A/ST10/00284.
Gai, Jiading; Obeid, Nady; Holtrop, Joseph L.; Wu, Xiao-Long; Lam, Fan; Fu, Maojing; Haldar, Justin P.; Hwu, Wen-mei W.; Liang, Zhi-Pei; Sutton, Bradley P.
2013-01-01
Several recent methods have been proposed to obtain significant speed-ups in MRI image reconstruction by leveraging the computational power of GPUs. Previously, we implemented a GPU-based image reconstruction technique called the Illinois Massively Parallel Acquisition Toolkit for Image reconstruction with ENhanced Throughput in MRI (IMPATIENT MRI) for reconstructing data collected along arbitrary 3D trajectories. In this paper, we improve IMPATIENT by removing computational bottlenecks by using a gridding approach to accelerate the computation of various data structures needed by the previous routine. Further, we enhance the routine with capabilities for off-resonance correction and multi-sensor parallel imaging reconstruction. Through implementation of optimized gridding into our iterative reconstruction scheme, speed-ups of more than a factor of 200 are provided in the improved GPU implementation compared to the previous accelerated GPU code. PMID:23682203
Development and Applications of 3D Cartesian CFD Technology
NASA Technical Reports Server (NTRS)
Melton, John E.; Berger, Marsha J.; VanDalsem, William (Technical Monitor)
1994-01-01
The urgent need for dramatic reductions in aircraft design cycle time is focusing scrutiny upon all aspects of computational fluid dynamics (CFD). These reductions will most likely come not from increased reliance upon user-interactive (and therefore time-expensive) methods, but instead from methods that can be fully automated and incorporated into 'black box' solutions. In comparison with tetrahedral methods, three-dimensional Cartesian grid approaches are in relative infancy, but initial experiences with automated Cartesian techniques are quite promising. Our research is targeted at furthering the development of Cartesian methods so that they can become key elements of a completely automatic grid generation/flow solution procedure applicable to the Euler analysis of complex aircraft geometries.
Stable boundary conditions for Cartesian grid calculations
NASA Technical Reports Server (NTRS)
Berger, M. J.; Leveque, R. J.
1990-01-01
The inviscid Euler equations in complicated geometries are solved using a Cartesian grid. This requires solid wall boundary conditions in the irregular grid cells near the boundary. Since these cells may be orders of magnitude smaller than the regular grid cells, stability is a primary concern. An approach to this problem is presented and its use is illustrated.
GSRP/David Marshall: Fully Automated Cartesian Grid CFD Application for MDO in High Speed Flows
NASA Technical Reports Server (NTRS)
2003-01-01
With the renewed interest in Cartesian gridding methodologies for the ease and speed of gridding complex geometries in addition to the simplicity of the control volumes used in the computations, it has become important to investigate ways of extending the existing Cartesian grid solver functionalities. This includes developing methods of modeling the viscous effects in order to utilize Cartesian grids solvers for accurate drag predictions and addressing the issues related to the distributed memory parallelization of Cartesian solvers. This research presents advances in two areas of interest in Cartesian grid solvers, viscous effects modeling and MPI parallelization. The development of viscous effects modeling using solely Cartesian grids has been hampered by the widely varying control volume sizes associated with the mesh refinement and the cut cells associated with the solid surface. This problem is being addressed by using physically based modeling techniques to update the state vectors of the cut cells and removing them from the finite volume integration scheme. This work is performed on a new Cartesian grid solver, NASCART-GT, with modifications to its cut cell functionality. The development of MPI parallelization addresses issues associated with utilizing Cartesian solvers on distributed memory parallel environments. This work is performed on an existing Cartesian grid solver, CART3D, with modifications to its parallelization methodology.
Shared Memory Parallelism for 3D Cartesian Discrete Ordinates Solver
NASA Astrophysics Data System (ADS)
Moustafa, Salli; Dutka-Malen, Ivan; Plagne, Laurent; Ponçot, Angélique; Ramet, Pierre
2014-06-01
This paper describes the design and the performance of DOMINO, a 3D Cartesian SN solver that implements two nested levels of parallelism (multicore+SIMD) on shared memory computation nodes. DOMINO is written in C++, a multi-paradigm programming language that enables the use of powerful and generic parallel programming tools such as Intel TBB and Eigen. These two libraries allow us to combine multi-thread parallelism with vector operations in an efficient and yet portable way. As a result, DOMINO can exploit the full power of modern multi-core processors and is able to tackle very large simulations, that usually require large HPC clusters, using a single computing node. For example, DOMINO solves a 3D full core PWR eigenvalue problem involving 26 energy groups, 288 angular directions (S16), 46 × 106 spatial cells and 1 × 1012 DoFs within 11 hours on a single 32-core SMP node. This represents a sustained performance of 235 GFlops and 40:74% of the SMP node peak performance for the DOMINO sweep implementation. The very high Flops/Watt ratio of DOMINO makes it a very interesting building block for a future many-nodes nuclear simulation tool.
NASA Technical Reports Server (NTRS)
Banks, D. W.; Hafez, M. M.
1996-01-01
Grid adaptation for structured meshes is the art of using information from an existing, but poorly resolved, solution to automatically redistribute the grid points in such a way as to improve the resolution in regions of high error, and thus the quality of the solution. This involves: (1) generate a grid vis some standard algorithm, (2) calculate a solution on this grid, (3) adapt the grid to this solution, (4) recalculate the solution on this adapted grid, and (5) repeat steps 3 and 4 to satisfaction. Steps 3 and 4 can be repeated until some 'optimal' grid is converged to but typically this is not worth the effort and just two or three repeat calculations are necessary. They also may be repeated every 5-10 time steps for unsteady calculations.
A 3-D chimera grid embedding technique
NASA Technical Reports Server (NTRS)
Benek, J. A.; Buning, P. G.; Steger, J. L.
1985-01-01
A three-dimensional (3-D) chimera grid-embedding technique is described. The technique simplifies the construction of computational grids about complex geometries. The method subdivides the physical domain into regions which can accommodate easily generated grids. Communication among the grids is accomplished by interpolation of the dependent variables at grid boundaries. The procedures for constructing the composite mesh and the associated data structures are described. The method is demonstrated by solution of the Euler equations for the transonic flow about a wing/body, wing/body/tail, and a configuration of three ellipsoidal bodies.
Efficient Fluid Dynamic Design Optimization Using Cartesian Grids
NASA Technical Reports Server (NTRS)
Dadone, A.; Grossman, B.; Sellers, Bill (Technical Monitor)
2004-01-01
This report is subdivided in three parts. The first one reviews a new approach to the computation of inviscid flows using Cartesian grid methods. The crux of the method is the curvature-corrected symmetry technique (CCST) developed by the present authors for body-fitted grids. The method introduces ghost cells near the boundaries whose values are developed from an assumed flow-field model in vicinity of the wall consisting of a vortex flow, which satisfies the normal momentum equation and the non-penetration condition. The CCST boundary condition was shown to be substantially more accurate than traditional boundary condition approaches. This improved boundary condition is adapted to a Cartesian mesh formulation, which we call the Ghost Body-Cell Method (GBCM). In this approach, all cell centers exterior to the body are computed with fluxes at the four surrounding cell edges. There is no need for special treatment corresponding to cut cells which complicate other Cartesian mesh methods.
A Cartesian grid approach with hierarchical refinement for compressible flows
NASA Technical Reports Server (NTRS)
Quirk, James J.
1994-01-01
Many numerical studies of flows that involve complex geometries are limited by the difficulties in generating suitable grids. We present a Cartesian boundary scheme for two-dimensional, compressible flows that is unfettered by the need to generate a computational grid and so it may be used, routinely, even for the most awkward of geometries. In essence, an arbitrary-shaped body is allowed to blank out some region of a background Cartesian mesh and the resultant cut-cells are singled out for special treatment. This is done within a finite-volume framework and so, in principle, any explicit flux-based integration scheme can take advantage of this method for enforcing solid boundary conditions. For best effect, the present Cartesian boundary scheme has been combined with a sophisticated, local mesh refinement scheme, and a number of examples are shown in order to demonstrate the efficacy of the combined algorithm for simulations of shock interaction phenomena.
NASA Astrophysics Data System (ADS)
Gilmanov, Anvar; Sotiropoulos, Fotis
2005-08-01
A numerical method is developed for solving the 3D, unsteady, incompressible Navier-Stokes equations in Cartesian domains containing immersed boundaries of arbitrary geometrical complexity moving with prescribed kinematics. The governing equations are discretized on a hybrid staggered/non-staggered grid layout using second-order accurate finite-difference formulas. The discrete equations are integrated in time via a second-order accurate dual-time-stepping, artificial compressibility iteration scheme. Unstructured, triangular meshes are employed to discretize complex immersed boundaries. The nodes of the surface mesh constitute a set of Lagrangian control points used to track the motion of the flexible body. At every instant in time, the influence of the body on the flow is accounted for by applying boundary conditions at Cartesian grid nodes located in the exterior but in the immediate vicinity of the body by reconstructing the solution along the local normal to the body surface. Grid convergence tests are carried out for the flow induced by an oscillating sphere in a cubic cavity, which show that the method is second-order accurate. The method is validated by applying it to calculate flow in a Cartesian domain containing a rigid sphere rotating at constant angular velocity as well as flow induced by a flapping wing. The ability of the method to simulate flows in domains with arbitrarily complex moving bodies is demonstrated by applying to simulate flow past an undulating fish-like body and flow past an anatomically realistic planktonic copepod performing an escape-like maneuver.
Triangle geometry processing for surface modeling and cartesian grid generation
Aftosmis, Michael J [San Mateo, CA; Melton, John E [Hollister, CA; Berger, Marsha J [New York, NY
2002-09-03
Cartesian mesh generation is accomplished for component based geometries, by intersecting components subject to mesh generation to extract wetted surfaces with a geometry engine using adaptive precision arithmetic in a system which automatically breaks ties with respect to geometric degeneracies. During volume mesh generation, intersected surface triangulations are received to enable mesh generation with cell division of an initially coarse grid. The hexagonal cells are resolved, preserving the ability to directionally divide cells which are locally well aligned.
Triangle Geometry Processing for Surface Modeling and Cartesian Grid Generation
NASA Technical Reports Server (NTRS)
Aftosmis, Michael J. (Inventor); Melton, John E. (Inventor); Berger, Marsha J. (Inventor)
2002-01-01
Cartesian mesh generation is accomplished for component based geometries, by intersecting components subject to mesh generation to extract wetted surfaces with a geometry engine using adaptive precision arithmetic in a system which automatically breaks ties with respect to geometric degeneracies. During volume mesh generation, intersected surface triangulations are received to enable mesh generation with cell division of an initially coarse grid. The hexagonal cells are resolved, preserving the ability to directionally divide cells which are locally well aligned.
Topology preserving advection of implicit interfaces on Cartesian grids
NASA Astrophysics Data System (ADS)
Qin, Zhipeng; Delaney, Keegan; Riaz, Amir; Balaras, Elias
2015-06-01
Accurate representation of implicit interface topology is important for the numerical computation of two phase flow on Cartesian grids. A new method is proposed for the construction of signed distance function by geometrically projecting interface topology onto the Cartesian grid using a multi-level projection framework. The method involves a stepwise improvement in the approximation to the signed distance function based on pointwise, piecewise and locally smooth reconstructions of the interface. We show that this approach provides accurate representation of the projected interface and its topology on the Cartesian grid, including the distance from the interface and the interface normal and curvature. The projected interface can be in the form of either a connected set of marker particles that evolve with Lagrangian advection, or a discrete set of points associated with an implicit interface that evolves with the advection of a scalar function. The signed distance function obtained with geometric projection is independent of the details of the scaler field, in contrast to the conventional approach where advection and reinitialization cannot be decoupled. As a result, errors introduced by reinitialization do not amplify advection errors, which leads to substantial improvement in both volume conservation and topology representation.
Nested Cartesian grid method in incompressible viscous fluid flow
NASA Astrophysics Data System (ADS)
Peng, Yih-Ferng; Mittal, Rajat; Sau, Amalendu; Hwang, Robert R.
2010-09-01
In this work, the local grid refinement procedure is focused by using a nested Cartesian grid formulation. The method is developed for simulating unsteady viscous incompressible flows with complex immersed boundaries. A finite-volume formulation based on globally second-order accurate central-difference schemes is adopted here in conjunction with a two-step fractional-step procedure. The key aspects that needed to be considered in developing such a nested grid solver are proper imposition of interface conditions on the nested-block boundaries, and accurate discretization of the governing equations in cells that are with block-interface as a control-surface. The interpolation procedure adopted in the study allows systematic development of a discretization scheme that preserves global second-order spatial accuracy of the underlying solver, and as a result high efficiency/accuracy nested grid discretization method is developed. Herein the proposed nested grid method has been widely tested through effective simulation of four different classes of unsteady incompressible viscous flows, thereby demonstrating its performance in the solution of various complex flow-structure interactions. The numerical examples include a lid-driven cavity flow and Pearson vortex problems, flow past a circular cylinder symmetrically installed in a channel, flow past an elliptic cylinder at an angle of attack, and flow past two tandem circular cylinders of unequal diameters. For the numerical simulations of flows past bluff bodies an immersed boundary (IB) method has been implemented in which the solid object is represented by a distributed body force in the Navier-Stokes equations. The main advantages of the implemented immersed boundary method are that the simulations could be performed on a regular Cartesian grid and applied to multiple nested-block (Cartesian) structured grids without any difficulty. Through the numerical experiments the strength of the solver in effectively
Courau, T.; Moustafa, S.; Plagne, L.; Poncot, A.
2013-07-01
As part of its activity, EDF R and D is developing a new nuclear core simulation code named COCAGNE. This code relies on DIABOLO, a Simplified PN (SPN) method to compute the neutron flux inside the core for eigenvalue calculations. In order to assess the accuracy of SPN calculations, we have developed DOMINO, a new 3D Cartesian SN solver. The parallel implementation of DOMINO is very efficient and allows to complete an eigenvalue calculation involving around 300 x 10{sup 9} degrees of freedom within a few hours on a single shared-memory supercomputing node. This computation corresponds to a 26-group S{sub 8} 3D PWR core model used to assess the SPN accuracy. At the pin level, the maximal error for the SP{sub 5} DIABOLO fission production rate is lower than 0.2% compared to the S{sub 8} DOMINO reference for this 3D PWR core model. (authors)
Implicit Approaches for Moving Boundaries in a 3-D Cartesian Method
NASA Technical Reports Server (NTRS)
Murman, Scott M.; Aftosmis, Michael J.; Berger, Marsha J.; Kwak, Dochan
2003-01-01
This work considers numerical simulation of three-dimensional flows with time-evolving boundaries. Such problems pose a variety of challenges for numerical schemes, and have received a substantial amount of attention in the recent literature. Since such simulations are unsteady, time-accurate solution of the governing equations is required. In special cases, the body motion can be treated by a uniform rigid motion of the computational domain. For the more general situation of relative-body motion, however, this simplification is unavailable and the simulations require a mechanism for ensuring that the mesh evolves with the moving boundaries. This involves a "remeshing" of the computational domain (either localized or global) at each physical timestep, and places a premium on both the speed and robustness of the remeshing algorithms. This work presents a method which includes unsteady flow simulation, rigid domain motion, and relative body motion using a time-evolving Cartesian grid system in three dimensions.
On NUFFT-based gridding for non-Cartesian MRI
NASA Astrophysics Data System (ADS)
Fessler, Jeffrey A.
2007-10-01
For MRI with non-Cartesian sampling, the conventional approach to reconstructing images is to use the gridding method with a Kaiser-Bessel (KB) interpolation kernel. Recently, Sha et al. [L. Sha, H. Guo, A.W. Song, An improved gridding method for spiral MRI using nonuniform fast Fourier transform, J. Magn. Reson. 162(2) (2003) 250-258] proposed an alternative method based on a nonuniform FFT (NUFFT) with least-squares (LS) design of the interpolation coefficients. They described this LS_NUFFT method as shift variant and reported that it yielded smaller reconstruction approximation errors than the conventional shift-invariant KB approach. This paper analyzes the LS_NUFFT approach in detail. We show that when one accounts for a certain linear phase factor, the core of the LS_NUFFT interpolator is in fact real and shift invariant. Furthermore, we find that the KB approach yields smaller errors than the original LS_NUFFT approach. We show that optimizing certain scaling factors can lead to a somewhat improved LS_NUFFT approach, but the high computation cost seems to outweigh the modest reduction in reconstruction error. We conclude that the standard KB approach, with appropriate parameters as described in the literature, remains the practical method of choice for gridding reconstruction in MRI.
On NUFFT-based gridding for non-Cartesian MRI.
Fessler, Jeffrey A
2007-10-01
For MRI with non-Cartesian sampling, the conventional approach to reconstructing images is to use the gridding method with a Kaiser-Bessel (KB) interpolation kernel. Recently, Sha et al. [L. Sha, H. Guo, A.W. Song, An improved gridding method for spiral MRI using nonuniform fast Fourier transform, J. Magn. Reson. 162(2) (2003) 250-258] proposed an alternative method based on a nonuniform FFT (NUFFT) with least-squares (LS) design of the interpolation coefficients. They described this LS_NUFFT method as shift variant and reported that it yielded smaller reconstruction approximation errors than the conventional shift-invariant KB approach. This paper analyzes the LS_NUFFT approach in detail. We show that when one accounts for a certain linear phase factor, the core of the LS_NUFFT interpolator is in fact real and shift invariant. Furthermore, we find that the KB approach yields smaller errors than the original LS_NUFFT approach. We show that optimizing certain scaling factors can lead to a somewhat improved LS_NUFFT approach, but the high computation cost seems to outweigh the modest reduction in reconstruction error. We conclude that the standard KB approach, with appropriate parameters as described in the literature, remains the practical method of choice for gridding reconstruction in MRI. PMID:17689121
On NUFFT-based gridding for non-Cartesian MRI
Fessler, Jeffrey A.
2007-01-01
For MRI with non-Cartesian sampling, the conventional approach to reconstructing images is to use the gridding method with a Kaiser-Bessel (KB) interpolation kernel. Recently, Sha et al. [1] proposed an alternative method based on a nonuniform FFT (NUFFT) with least-squares (LS) design of the interpolation coefficients. They described this LS_NUFFT method as shift variant and reported that it yielded smaller reconstruction approximation errors than the conventional shift-invariant KB approach. This paper analyzes the LS_NUFFT approach in detail. We show that when one accounts for a certain linear phase factor, the core of the LS_NUFFT interpolator is in fact real and shift invariant. Furthermore, we find that the KB approach yields smaller errors than the original LS_NUFFT approach. We show that optimizing certain scaling factors can lead to a somewhat improved LS_NUFFT approach, but the high computation cost seems to outweigh the modest reduction in reconstruction error. We conclude that the standard KB approach, with appropriate parameters as described in the literature, remains the practical method of choice for gridding reconstruction in MRI. PMID:17689121
A multilevel Cartesian non-uniform grid time domain algorithm
Meng Jun; Boag, Amir; Lomakin, Vitaliy; Michielssen, Eric
2010-11-01
A multilevel Cartesian non-uniform grid time domain algorithm (CNGTDA) is introduced to rapidly compute transient wave fields radiated by time dependent three-dimensional source constellations. CNGTDA leverages the observation that transient wave fields generated by temporally bandlimited and spatially confined source constellations can be recovered via interpolation from appropriately delay- and amplitude-compensated field samples. This property is used in conjunction with a multilevel scheme, in which the computational domain is hierarchically decomposed into subdomains with sparse non-uniform grids used to obtain the fields. For both surface and volumetric source distributions, the computational cost of CNGTDA to compute the transient field at N{sub s} observation locations from N{sub s} collocated sources for N{sub t} discrete time instances scales as O(N{sub t}N{sub s}logN{sub s}) and O(N{sub t}N{sub s}log{sup 2}N{sub s}) in the low- and high-frequency regimes, respectively. Coupled with marching-on-in-time (MOT) time domain integral equations, CNGTDA can facilitate efficient analysis of large scale time domain electromagnetic and acoustic problems.
Grid generation for 3D turbomachinery configurations
NASA Technical Reports Server (NTRS)
Shih, Ming-Hsin; Soni, Bharat K.
1992-01-01
A numerical grid generation algorithm associated with the flow field about turbomachinery geometries is presented. Graphical user interface is developed with the FORMS Library to create an interactive, user-friendly working environment. This customized algorithm reduces the man-hours required to generate a grid associated with turbomachinery geometry, as compared to those required by general-purpose grid generation softwares. Bezier curves are utilized both interactively and automatically to accomplish grid line smoothness and orthogonality. Graphical user interactions are provided in the algorithm and allow the user to design and manipulate the grid lines with a mouse.
Unstructured 3D grid toolbox for modeling and simulation
George, D.
1997-11-01
Computable 3D grids that accurately represent complex multimaterial geometries are essential for both static and time-dependent modeling and simulation. LaGriT, the grid toolbox developed at Los Alamos provides a sophisticated set of initial grid generation, grid maintenance and grid optimization tools. We present example grids that demonstrate the flexibility of the grid generator. Additionally, we present the results of an electrostatic calculation and a grain growth problem that illustrate the grid optimization features and the utility of the grid server architecture.
S3D: An interactive surface grid generation tool
NASA Technical Reports Server (NTRS)
Luh, Raymond Ching-Chung; Pierce, Lawrence E.; Yip, David
1992-01-01
S3D, an interactive software tool for surface grid generation, is described. S3D provides the means with which a geometry definition based either on a discretized curve set or a rectangular set can be quickly processed towards the generation of a surface grid for computational fluid dynamics (CFD) applications. This is made possible as a result of implementing commonly encountered surface gridding tasks in an environment with a highly efficient and user friendly graphical interface. Some of the more advanced features of S3D include surface-surface intersections, optimized surface domain decomposition and recomposition, and automated propagation of edge distributions to surrounding grids.
3-D SAR image formation from sparse aperture data using 3-D target grids
NASA Astrophysics Data System (ADS)
Bhalla, Rajan; Li, Junfei; Ling, Hao
2005-05-01
The performance of ATR systems can potentially be improved by using three-dimensional (3-D) SAR images instead of the traditional two-dimensional SAR images or one-dimensional range profiles. 3-D SAR image formation of targets from radar backscattered data collected on wide angle, sparse apertures has been identified by AFRL as fundamental to building an object detection and recognition capability. A set of data has been released as a challenge problem. This paper describes a technique based on the concept of 3-D target grids aimed at the formation of 3-D SAR images of targets from sparse aperture data. The 3-D target grids capture the 3-D spatial and angular scattering properties of the target and serve as matched filters for SAR formation. The results of 3-D SAR formation using the backhoe public release data are presented.
X3D moving grid methods for semiconductor applications
Kuprat, A.; Cartwright, D.; Gammel, J.T.; George, D.; Kendrick, B.; Kilcrease, D.; Trease, H.; Walker, R.
1997-11-01
The Los Alamos 3D grid toolbox handles grid maintenance chores and provides access to a sophisticated set of optimization algorithms for unstructured grids. The application of these tools to semiconductor problems is illustrated in three examples: grain growth, topographic deposition and electrostatics. These examples demonstrate adaptive smoothing, front tracking, and automatic, adaptive refinement/derefinement.
3D Feature Extraction for Unstructured Grids
NASA Technical Reports Server (NTRS)
Silver, Deborah
1996-01-01
Visualization techniques provide tools that help scientists identify observed phenomena in scientific simulation. To be useful, these tools must allow the user to extract regions, classify and visualize them, abstract them for simplified representations, and track their evolution. Object Segmentation provides a technique to extract and quantify regions of interest within these massive datasets. This article explores basic algorithms to extract coherent amorphous regions from two-dimensional and three-dimensional scalar unstructured grids. The techniques are applied to datasets from Computational Fluid Dynamics and those from Finite Element Analysis.
A Fast and Robust Poisson-Boltzmann Solver Based on Adaptive Cartesian Grids.
Boschitsch, Alexander H; Fenley, Marcia O
2011-05-10
An adaptive Cartesian grid (ACG) concept is presented for the fast and robust numerical solution of the 3D Poisson-Boltzmann Equation (PBE) governing the electrostatic interactions of large-scale biomolecules and highly charged multi-biomolecular assemblies such as ribosomes and viruses. The ACG offers numerous advantages over competing grid topologies such as regular 3D lattices and unstructured grids. For very large biological molecules and multi-biomolecule assemblies, the total number of grid-points is several orders of magnitude less than that required in a conventional lattice grid used in the current PBE solvers thus allowing the end user to obtain accurate and stable nonlinear PBE solutions on a desktop computer. Compared to tetrahedral-based unstructured grids, ACG offers a simpler hierarchical grid structure, which is naturally suited to multigrid, relieves indirect addressing requirements and uses fewer neighboring nodes in the finite difference stencils. Construction of the ACG and determination of the dielectric/ionic maps are straightforward, fast and require minimal user intervention. Charge singularities are eliminated by reformulating the problem to produce the reaction field potential in the molecular interior and the total electrostatic potential in the exterior ionic solvent region. This approach minimizes grid-dependency and alleviates the need for fine grid spacing near atomic charge sites. The technical portion of this paper contains three parts. First, the ACG and its construction for general biomolecular geometries are described. Next, a discrete approximation to the PBE upon this mesh is derived. Finally, the overall solution procedure and multigrid implementation are summarized. Results obtained with the ACG-based PBE solver are presented for: (i) a low dielectric spherical cavity, containing interior point charges, embedded in a high dielectric ionic solvent - analytical solutions are available for this case, thus allowing rigorous
Extension of Efficient Low Dissipative High Order Schemes for 3-D Curvilinear Moving Grids
NASA Technical Reports Server (NTRS)
Vinokur, Marcel; Yee H. C.; Koga, Dennis (Technical Monitor)
2000-01-01
The efficient low dissipative high order schemes proposed by Yee et al. is formulated for 3-D curvilinear moving grids. These schemes consists of a high order base schemes combined with nonlinear characteristic filters. The amount of numerical dissipation is minimized by applying the schemes to the entropy splitting form of the inviscid flux derivatives. The analysis is given for a thermally perfect gas. The main difficulty in the extension of higher order schemes that were formulated in Cartesian coordinates to curvilinear moving grids is the higher order transformed metric evaluations. The higher order numerical evaluation of the transformed metric terms to insure freestream preservation is done in a coordinate invariant manner. The formulation is an improvement over existing formulation of high order scheme in curvilinear moving grids.
A fast nested dissection solver for Cartesian 3D elliptic problems using hierarchical matrices
NASA Astrophysics Data System (ADS)
Schmitz, Phillip G.; Ying, Lexing
2014-02-01
We present a fast algorithm for solutions to linear systems arising from three dimensional elliptic problems on a regular Cartesian mesh. We follow the approach of Schmitz and Ying (2012) on combining the nested dissection matrix factorization method with hierarchical matrices in two dimensions and extend it to the three dimensional case. A theoretical linear time complexity is derived and a more practical variant with slightly worse scaling is demonstrated.
OTAHAL,THOMAS J.; GALLIS,MICHAIL A.; BARTEL,TIMOTHY J.
2000-06-27
This paper presents an investigation of a technique for using two-dimensional bodies composed of simple polygons with a body decoupled uniform Cmtesian grid in the Direct Simulation Monte Carlo method (DSMC). The method employs an automated grid pre-processing scheme beginning form a CAD geometry definition file, and is based on polygon triangulation using a trapezoid algorithm. A particle-body intersection time comparison is presented between the Icarus DSMC code using a body-fitted structured grid and using a structured body-decoupled Cartesian grid with both linear and logarithmic search techniques. A comparison of neutral flow over a cylinder is presented using the structured body fitted grid and the Cartesian body de-coupled grid.
NASA Technical Reports Server (NTRS)
Aftosmis, M. J.; Berger, M. J.; Adomavicius, G.; Nixon, David (Technical Monitor)
1998-01-01
The work presents a new method for on-the-fly domain decomposition technique for mapping grids and solution algorithms to parallel machines, and is applicable to both shared-memory and message-passing architectures. It will be demonstrated on the Cray T3E, HP Exemplar, and SGI Origin 2000. Computing time has been secured on all these platforms. The decomposition technique is an outgrowth of techniques used in computational physics for simulations of N-body problems and the event horizons of black holes, and has not been previously used by the CFD community. Since the technique offers on-the-fly partitioning, it offers a substantial increase in flexibility for computing in heterogeneous environments, where the number of available processors may not be known at the time of job submission. In addition, since it is dynamic it permits the job to be repartitioned without global communication in cases where additional processors become available after the simulation has begun, or in cases where dynamic mesh adaptation changes the mesh size during the course of a simulation. The platform for this partitioning strategy is a completely new Cartesian Euler solver tarcreted at parallel machines which may be used in conjunction with Ames' "Cart3D" arbitrary geometry simulation package.
Cartesian Off-Body Grid Adaption for Viscous Time- Accurate Flow Simulation
NASA Technical Reports Server (NTRS)
Buning, Pieter G.; Pulliam, Thomas H.
2011-01-01
An improved solution adaption capability has been implemented in the OVERFLOW overset grid CFD code. Building on the Cartesian off-body approach inherent in OVERFLOW and the original adaptive refinement method developed by Meakin, the new scheme provides for automated creation of multiple levels of finer Cartesian grids. Refinement can be based on the undivided second-difference of the flow solution variables, or on a specific flow quantity such as vorticity. Coupled with load-balancing and an inmemory solution interpolation procedure, the adaption process provides very good performance for time-accurate simulations on parallel compute platforms. A method of using refined, thin body-fitted grids combined with adaption in the off-body grids is presented, which maximizes the part of the domain subject to adaption. Two- and three-dimensional examples are used to illustrate the effectiveness and performance of the adaption scheme.
An adaptive discretization of compressible flow using a multitude of moving Cartesian grids
NASA Astrophysics Data System (ADS)
Qiu, Linhai; Lu, Wenlong; Fedkiw, Ronald
2016-01-01
We present a novel method for simulating compressible flow on a multitude of Cartesian grids that can rotate and translate. Following previous work, we split the time integration into an explicit step for advection followed by an implicit solve for the pressure. A second order accurate flux based scheme is devised to handle advection on each moving Cartesian grid using an effective characteristic velocity that accounts for the grid motion. In order to avoid the stringent time step restriction imposed by very fine grids, we propose strategies that allow for a fluid velocity CFL number larger than 1. The stringent time step restriction related to the sound speed is alleviated by formulating an implicit linear system in order to find a pressure consistent with the equation of state. This implicit linear system crosses overlapping Cartesian grid boundaries by utilizing local Voronoi meshes to connect the various degrees of freedom obtaining a symmetric positive-definite system. Since a straightforward application of this technique contains an inherent central differencing which can result in spurious oscillations, we introduce a new high order diffusion term similar in spirit to ENO-LLF but solved for implicitly in order to avoid any associated time step restrictions. The method is conservative on each grid, as well as globally conservative on the background grid that contains all other grids. Moreover, a conservative interpolation operator is devised for conservatively remapping values in order to keep them consistent across different overlapping grids. Additionally, the method is extended to handle two-way solid fluid coupling in a monolithic fashion including cases (in the appendix) where solids in close proximity do not properly allow for grid based degrees of freedom in between them.
NASA Technical Reports Server (NTRS)
Finley, Dennis B.
1995-01-01
This report documents results from the Euler Technology Assessment program. The objective was to evaluate the efficacy of Euler computational fluid dynamics (CFD) codes for use in preliminary aircraft design. Both the accuracy of the predictions and the rapidity of calculations were to be assessed. This portion of the study was conducted by Lockheed Fort Worth Company, using a recently developed in-house Cartesian-grid code called SPLITFLOW. The Cartesian grid technique offers several advantages for this study, including ease of volume grid generation and reduced number of cells compared to other grid schemes. SPLITFLOW also includes grid adaptation of the volume grid during the solution convergence to resolve high-gradient flow regions. This proved beneficial in resolving the large vortical structures in the flow for several configurations examined in the present study. The SPLITFLOW code predictions of the configuration forces and moments are shown to be adequate for preliminary design analysis, including predictions of sideslip effects and the effects of geometry variations at low and high angles of attack. The time required to generate the results from initial surface definition is on the order of several hours, including grid generation, which is compatible with the needs of the design environment.
Schwartz, Peter; Barad, Michael; Colella, Phillip; Ligocki, Terry
2004-11-02
We present an algorithm for solving Poisson's equation and the heat equation on irregular domains in three dimensions. Our work uses the Cartesian grid embedded boundary algorithm for 2D problems of Johansen and Colella (1998, J. Comput. Phys. 147(2):60-85) and extends work of McCorquodale, Colella and Johansen (2001, J. Comput. Phys. 173(2):60-85). Our method is based on a finite-volume discretization of the operator, on the control volumes formed by intersecting the Cartesian grid cells with the domain, combined with a second-order accurate discretization of the fluxes. The resulting method provides uniformly second-order accurate solutions and gradients and is amenable to geometric multigrid solvers.
Cartesian grid simulations of gas-solids flow systems with complex geometry
Dietiker, Jean-Francois; Li, Tingwen; Garg, Rahul; Shahnam, Mehrdad
2013-02-01
Complex geometries encountered in many applications of gas–solids flow need special treatment in most legacy multiphase flow solvers with Cartesian numerical grid. This paper briefly outlines the implementation of a cut cell technique in the open-source multiphase flow solver—MFIX for accurate representation of complex geometries. Specifically, applications of the Cartesian cut cell method to different gas–solids fluidization systems including a small scale bubbling fluidized bed with submerged tube bundle and a complete pilot-scale circulating fluidized bed will be presented. In addition to qualitative predictions on the general flow behaviors inside each system, quantitative comparison with the available experimental data will be presented. Furthermore, some results on extending the current cut-cell technique to Lagrangian–Eulerian simulations will be presented.
RHALE: A 3-D MMALE code for unstructured grids
Peery, J.S.; Budge, K.G.; Wong, M.K.W.; Trucano, T.G.
1993-08-01
This paper describes RHALE, a multi-material arbitrary Lagrangian-Eulerian (MMALE) shock physics code. RHALE is the successor to CTH, Sandia`s 3-D Eulerian shock physics code, and will be capable of solving problems that CTH cannot adequately address. We discuss the Lagrangian solid mechanics capabilities of RHALE, which include arbitrary mesh connectivity, superior artificial viscosity, and improved material models. We discuss the MMALE algorithms that have been extended for arbitrary grids in both two- and three-dimensions. The MMALE addition to RHALE provides the accuracy of a Lagrangian code while allowing a calculation to proceed under very large material distortions. Coupling an arbitrary quadrilateral or hexahedral grid to the MMALE solution facilitates modeling of complex shapes with a greatly reduced number of computational cells. RHALE allows regions of a problem to be modeled with Lagrangian, Eulerian or ALE meshes. In addition, regions can switch from Lagrangian to ALE to Eulerian based on user input or mesh distortion. For ALE meshes, new node locations are determined with a variety of element based equipotential schemes. Element quantities are advected with donor, van Leer, or Super-B algorithms. Nodal quantities are advected with the second order SHALE or HIS algorithms. Material interfaces are determined with a modified Young`s high resolution interface tracker or the SLIC algorithm. RHALE has been used to model many problems of interest to the mechanics, hypervelocity impact, and shock physics communities. Results of a sampling of these problems are presented in this paper.
The self-organization of grid cells in 3D.
Stella, Federico; Treves, Alessandro
2015-01-01
Do we expect periodic grid cells to emerge in bats, or perhaps dolphins, exploring a three-dimensional environment? How long will it take? Our self-organizing model, based on ring-rate adaptation, points at a complex answer. The mathematical analysis leads to asymptotic states resembling face centered cubic (FCC) and hexagonal close packed (HCP) crystal structures, which are calculated to be very close to each other in terms of cost function. The simulation of the full model, however, shows that the approach to such asymptotic states involves several sub-processes over distinct time scales. The smoothing of the initially irregular multiple fields of individual units and their arrangement into hexagonal grids over certain best planes are observed to occur relatively quickly, even in large 3D volumes. The correct mutual orientation of the planes, though, and the coordinated arrangement of different units, take a longer time, with the network showing no sign of convergence towards either a pure FCC or HCP ordering. PMID:25821989
The Stagger-grid: A grid of 3D stellar atmosphere models. IV. Limb darkening coefficients
NASA Astrophysics Data System (ADS)
Magic, Z.; Chiavassa, A.; Collet, R.; Asplund, M.
2015-01-01
Aims: We compute the emergent stellar spectra from the UV to far infrared for different viewing angles using realistic 3D model atmospheres for a large range in stellar parameters to predict the stellar limb darkening. Methods: We have computed full 3D LTE synthetic spectra based on 3D radiative hydrodynamic atmosphere models from the Stagger-grid in the ranges: Teff from 4000 to 7000 K, log g from 1.5 to 5.0, and [Fe/H], from -4.0 to +0.5. From the resulting intensities, we derived coefficients for the standard limb darkening laws considering a number of often-used photometric filters. Furthermore, we calculated theoretical transit light curves, in order to quantify the differences between predictions by the widely used 1D model atmosphere and our 3D models. Results: The 3D models are often found to predict steeper darkening towards the limb compared to the 1D models, mainly due to the temperature stratifications and temperature gradients being different in the 3D models compared to those predicted with 1D models based on the mixing length theory description of convective energy transport. The resulting differences in the transit light curves are rather small; however, these can be significant for high-precision observations of extrasolar transits, and are able to lower the residuals from the fits with 1D limb darkening profiles. Conclusions: We advocate the use of the new limb darkening coefficients provided for the standard four-parameter non-linear power law, which can fit the limb darkening more accurately than other choices. Full Table A.1 and the grid of spectra are only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/573/A90, as well as at http://www.stagger-stars.net
A Cartesian grid embedded boundary method for the heat equation on irregular domains
McCorquodale, Peter; Colella, Phillip; Johansen, Hans
2001-03-14
We present an algorithm for solving the heat equation on irregular time-dependent domains. It is based on the Cartesian grid embedded boundary algorithm of Johansen and Colella (J. Comput. Phys. 147(2):60--85) for discretizing Poisson's equation, combined with a second-order accurate discretization of the time derivative. This leads to a method that is second-order accurate in space and time. For the case where the boundary is moving, we convert the moving-boundary problem to a sequence of fixed-boundary problems, combined with an extrapolation procedure to initialize values that are uncovered as the boundary moves. We find that, in the moving boundary case, the use of Crank--Nicolson time discretization is unstable, requiring us to use the L{sub 0}-stable implicit Runge--Kutta method of Twizell, Gumel, and Arigu.
Cartesian-Grid Simulations of a Canard-Controlled Missile with a Free-Spinning Tail
NASA Technical Reports Server (NTRS)
Murman, Scott M.; Aftosmis, Michael J.; Kwak, Dochan (Technical Monitor)
2002-01-01
The proposed paper presents a series of simulations of a geometrically complex, canard-controlled, supersonic missile with free-spinning tail fins. Time-dependent simulations were performed using an inviscid Cartesian-grid-based method with results compared to both experimental data and high-resolution Navier-Stokes computations. At fixed free stream conditions and canard deflections, the tail spin rate was iteratively determined such that the net rolling moment on the empennage is zero. This rate corresponds to the time-asymptotic rate of the free-to-spin fin system. After obtaining spin-averaged aerodynamic coefficients for the missile, the investigation seeks a fixed-tail approximation to the spin-averaged aerodynamic coefficients, and examines the validity of this approximation over a variety of freestream conditions.
NASA Astrophysics Data System (ADS)
Chen, XinJian
2012-12-01
This paper presents an application of a three-dimensional unstructured Cartesian grid model (Chen, 2011) to a real-world case, namely the Crystal River/Kings Bay system located on the Gulf coast of the Florida peninsula of the United States. Crystal River/Kings Bay is a spring-fed estuarine system which is believed to be the largest natural refuge in the United States for manatees during the coldest days in winter because of the existence of a large amount of discharge out of numerous spring vents at the bottom of Kings Bay. The unstructured Cartesian grid model was used to simulate hydrodynamics, including salinity transport processes and thermodynamics, in the estuary during a 34-month period from April 2007 to February 2010. Although there are some unidentified uncertainties in quantifying flow rates from the spring vents and salinity variations in spring flows, simulated water elevations, salinities, temperatures, and cross-sectional flux all match well or very well with measured real-time field data. This suggests that the unstructured Cartesian grid model can adequately simulate hydrodynamics in a complex shallow water system such as Crystal River/Kings Bay and the numerical theory for the unstructured Cartesian grid model works properly. The successful simulation of hydrodynamics in the estuarine system also suggests that an empirical formula that relates the spring discharge with the water level in Kings Bay and the groundwater level measured in a nearby well is reasonable.
3D Structured Grid Generation Codes for Turbomachinery
NASA Technical Reports Server (NTRS)
Loellbach, James; Tsung, Fu-Lin
1999-01-01
This report describes the research tasks during the past year. The research was mainly in the area of computational grid generation in support of CFD analyses of turbomachinery components. In addition to the grid generation work, a numerical simulation was obtained for the flow through a centrifugal gas compressor using an unstructured Navier-Stokes solver. Other tasks involved many different turbomachinery component analyses. These analyses were performed for NASA projects or for industrial applications. The work includes both centrifugal and axial machines, single and multiple blade rows, and steady and unsteady analyses. Over the past five years, a set of structured grid generation codes were developed that allow grids to be obtained fairly quickly for the large majority of configurations we encounter. These codes do not comprise a generalized grid generation package; they are noninteractive codes specifically designed for turbomachinery blade row geometries. But because of this limited scope, the codes are small, fast, and portable, and they can be run in the batch mode on small workstations. During the past year, these programs were used to generate computational grids were modified for a wide variety of configurations. In particular, the codes or wrote supplementary codes to improve our grid generation capabilities for multiple blade row configurations. This involves generating separate grids for each blade row, and then making them match and overlap by a few grid points at their common interface so that fluid properties are communicated across the interface. Unsteady rotor/stator analyses were performed for an axial turbine, a centrifugal compressor, and a centrifugal pump. Steady-state single-blade-row analyses were made for a study of blade sweep in transonic compressors. There was also cooperation on the application of an unstructured Navier-Stokes solver for turbomachinery flow simulations. In particular, the unstructured solver was used to analyze the
Solwnd: A 3D Compressible MHD Code for Solar Wind Studies. Version 1.0: Cartesian Coordinates
NASA Technical Reports Server (NTRS)
Deane, Anil E.
1996-01-01
Solwnd 1.0 is a three-dimensional compressible MHD code written in Fortran for studying the solar wind. Time-dependent boundary conditions are available. The computational algorithm is based on Flux Corrected Transport and the code is based on the existing code of Zalesak and Spicer. The flow considered is that of shear flow with incoming flow that perturbs this base flow. Several test cases corresponding to pressure balanced magnetic structures with velocity shear flow and various inflows including Alfven waves are presented. Version 1.0 of solwnd considers a rectangular Cartesian geometry. Future versions of solwnd will consider a spherical geometry. Some discussions of this issue is presented.
NASA Astrophysics Data System (ADS)
Zhang, Y.; Chen, C.; Du, J.; Sun, S.; Liang, Q.
2015-12-01
In the study of the inversion of gravity and magnetic data, the discretization of underground space is usually achieved by the use of structured grids. For instance, using the regular block as the module unit to divide model space in Cartesian coordinate system and the tesseroid in spherical coordinate system. Structured grids show clear spatial structures and mathematical properties. However, the block can only provide a rough approximation to the given terrain and using the tesseroid to approximate the terrain even seems impracticable. These shape determining errors cause the reduction of forward modeling precision. Moreover, the precision decreases again while using the tesseroid as no analytical algorithm has been acquired. On the other hand, since most terrain data has a limited resolution, unstructured grids, based on the polyhedron or tetrahedron, could fill the space completely, which allows us to reduce errors in shape determination to the minima. In addition, the analytical algorithms for polyhedron have been proposed. In our study, we use the tetrahedron as the module unit to divide the underground space. Moreover, based on the former researches, we supplement new analytical algorithms for tetrahedron to forward modeling gravity and magnetic fields and their gradient tensors in both Cartesian and spherical coordinate systems. The algorithm is testified by comparing the forward gravity and magnetic data of a block with the data obtained using the existed algorithms. The absolute difference between these two data is under 10e-9 mGal. Our approach is suitable for the inversion of gravity and magnetic data in both Cartesian and spherical coordinate systems.This study is supported by Natural Science Fund of Hubei Province (Grant No.: 2015CFB361) and International Cooperation Project in Science and Technology of China (Grant No.: 2010DFA24580).
An adaptive discretization of incompressible flow using a multitude of moving Cartesian grids
NASA Astrophysics Data System (ADS)
English, R. Elliot; Qiu, Linhai; Yu, Yue; Fedkiw, Ronald
2013-12-01
We present a novel method for discretizing the incompressible Navier-Stokes equations on a multitude of moving and overlapping Cartesian grids each with an independently chosen cell size to address adaptivity. Advection is handled with first and second order accurate semi-Lagrangian schemes in order to alleviate any time step restriction associated with small grid cell sizes. Likewise, an implicit temporal discretization is used for the parabolic terms including Navier-Stokes viscosity which we address separately through the development of a method for solving the heat diffusion equations. The most intricate aspect of any such discretization is the method used in order to solve the elliptic equation for the Navier-Stokes pressure or that resulting from the temporal discretization of parabolic terms. We address this by first removing any degrees of freedom which duplicately cover spatial regions due to overlapping grids, and then providing a discretization for the remaining degrees of freedom adjacent to these regions. We observe that a robust second order accurate symmetric positive definite readily preconditioned discretization can be obtained by constructing a local Voronoi region on the fly for each degree of freedom in question in order to obtain both its stencil (logically connected neighbors) and stencil weights. Internal curved boundaries such as at solid interfaces are handled using a simple immersed boundary approach which is directly applied to the Voronoi mesh in both the viscosity and pressure solves. We independently demonstrate each aspect of our approach on test problems in order to show efficacy and convergence before finally addressing a number of common test cases for incompressible flow with stationary and moving solid bodies.
NASA Technical Reports Server (NTRS)
Finley, Dennis B.; Karman, Steve L., Jr.
1996-01-01
The objective of the second phase of the Euler Technology Assessment program was to evaluate the ability of Euler computational fluid dynamics codes to predict compressible flow effects over a generic fighter wind tunnel model. This portion of the study was conducted by Lockheed Martin Tactical Aircraft Systems, using an in-house Cartesian-grid code called SPLITFLOW. The Cartesian grid technique offers several advantages, including ease of volume grid generation and reduced number of cells compared to other grid schemes. SPLITFLOW also includes grid adaption of the volume grid during the solution to resolve high-gradient regions. The SPLITFLOW code predictions of configuration forces and moments are shown to be adequate for preliminary design, including predictions of sideslip effects and the effects of geometry variations at low and high angles-of-attack. The transonic pressure prediction capabilities of SPLITFLOW are shown to be improved over subsonic comparisons. The time required to generate the results from initial surface data is on the order of several hours, including grid generation, which is compatible with the needs of the design environment.
NASA Technical Reports Server (NTRS)
Aftosmis, M. J.; Berger, M. J.; Adomavicius, G.
2000-01-01
Preliminary verification and validation of an efficient Euler solver for adaptively refined Cartesian meshes with embedded boundaries is presented. The parallel, multilevel method makes use of a new on-the-fly parallel domain decomposition strategy based upon the use of space-filling curves, and automatically generates a sequence of coarse meshes for processing by the multigrid smoother. The coarse mesh generation algorithm produces grids which completely cover the computational domain at every level in the mesh hierarchy. A series of examples on realistically complex three-dimensional configurations demonstrate that this new coarsening algorithm reliably achieves mesh coarsening ratios in excess of 7 on adaptively refined meshes. Numerical investigations of the scheme's local truncation error demonstrate an achieved order of accuracy between 1.82 and 1.88. Convergence results for the multigrid scheme are presented for both subsonic and transonic test cases and demonstrate W-cycle multigrid convergence rates between 0.84 and 0.94. Preliminary parallel scalability tests on both simple wing and complex complete aircraft geometries shows a computational speedup of 52 on 64 processors using the run-time mesh partitioner.
Features of CPB: A Poisson-Boltzmann Solver that Uses an Adaptive Cartesian Grid
Harris, Robert C.; Mackoy, Travis
2014-01-01
The capabilities of an adaptive Cartesian grid (ACG)-based Poisson-Boltzmann (PB) solver (CPB) are demonstrated. CPB solves various PB equations with an ACG, built from a hierarchical octree decomposition of the computational domain. This procedure decreases the number of points required, thereby reducing computational demands. Inside the molecule, CPB solves for the reaction-field component (ϕrf) of the electrostatic potential (ϕ), eliminating the charge-induced singularities in ϕ. CPB can also use a least-squares reconstruction method to improve estimates of ϕ at the molecular surface. All surfaces, which include solvent excluded, Gaussians and others, are created analytically, eliminating errors associated with triangulated surfaces. These features allow CPB to produce detailed surface maps of ϕ and compute polar solvation and binding free energies for large biomolecular assemblies, such as ribosomes and viruses, with reduced computational demands compared to other PBE solvers. The reader is referred to http://www.continuum-dynamics.com/solution-mm.html for how to obtain the CPB software. PMID:25430617
Features of CPB: a Poisson-Boltzmann solver that uses an adaptive Cartesian grid.
Fenley, Marcia O; Harris, Robert C; Mackoy, Travis; Boschitsch, Alexander H
2015-02-01
The capabilities of an adaptive Cartesian grid (ACG)-based Poisson-Boltzmann (PB) solver (CPB) are demonstrated. CPB solves various PB equations with an ACG, built from a hierarchical octree decomposition of the computational domain. This procedure decreases the number of points required, thereby reducing computational demands. Inside the molecule, CPB solves for the reaction-field component (ϕrf ) of the electrostatic potential (ϕ), eliminating the charge-induced singularities in ϕ. CPB can also use a least-squares reconstruction method to improve estimates of ϕ at the molecular surface. All surfaces, which include solvent excluded, Gaussians, and others, are created analytically, eliminating errors associated with triangulated surfaces. These features allow CPB to produce detailed surface maps of ϕ and compute polar solvation and binding free energies for large biomolecular assemblies, such as ribosomes and viruses, with reduced computational demands compared to other Poisson-Boltzmann equation solvers. The reader is referred to http://www.continuum-dynamics.com/solution-mm.html for how to obtain the CPB software. PMID:25430617
NASA Technical Reports Server (NTRS)
Aftosmis, M. J.; Berger, M. J.; Murman, S. M.; Kwak, Dochan (Technical Monitor)
2002-01-01
The proposed paper will present recent extensions in the development of an efficient Euler solver for adaptively-refined Cartesian meshes with embedded boundaries. The paper will focus on extensions of the basic method to include solution adaptation, time-dependent flow simulation, and arbitrary rigid domain motion. The parallel multilevel method makes use of on-the-fly parallel domain decomposition to achieve extremely good scalability on large numbers of processors, and is coupled with an automatic coarse mesh generation algorithm for efficient processing by a multigrid smoother. Numerical results are presented demonstrating parallel speed-ups of up to 435 on 512 processors. Solution-based adaptation may be keyed off truncation error estimates using tau-extrapolation or a variety of feature detection based refinement parameters. The multigrid method is extended to for time-dependent flows through the use of a dual-time approach. The extension to rigid domain motion uses an Arbitrary Lagrangian-Eulerlarian (ALE) formulation, and results will be presented for a variety of two- and three-dimensional example problems with both simple and complex geometry.
NASA Astrophysics Data System (ADS)
Sawada, Ryohto; Sato, Takeshi; Ishikawa, Kenichi L.
2016-02-01
We report a three-dimensional numerical implementation of the multiconfiguration time-dependent Hartree-Fock method based on a multiresolution Cartesian grid, with no need to assume any symmetry of molecular structure. We successfully compute high-harmonic generation of H2 and H2O . The present implementation will open a way to the first-principles theoretical study of intense-field- and attosecond-pulse-induced ultrafast phenomena in general molecules.
NASA Technical Reports Server (NTRS)
Steinthorsson, E.; Shih, T. I-P.; Roelke, R. J.
1991-01-01
In order to generate good quality systems for complicated three-dimensional spatial domains, the grid-generation method used must be able to exert rather precise controls over grid-point distributions. Several techniques are presented that enhance control of grid-point distribution for a class of algebraic grid-generation methods known as the two-, four-, and six-boundary methods. These techniques include variable stretching functions from bilinear interpolation, interpolating functions based on tension splines, and normalized K-factors. The techniques developed in this study were incorporated into a new version of GRID3D called GRID3D-v2. The usefulness of GRID3D-v2 was demonstrated by using it to generate a three-dimensional grid system in the coolent passage of a radial turbine blade with serpentine channels and pin fins.
ON 3D, AUTOMATED, SELF-CONTAINED GRID GENERATION WITHIN THE RAGE CAMR HYDROCODE
Oakes, W.R.; Henning, P.J.; Gittings, M.L.; Weaver, R.P.
2000-06-01
We discuss using the inherent grid manipulation capability within a Continuously Adaptive Mesh Refinement hydrodynamics code, RAGE, to implement parallel, automated, self-contained grid generation. We show how arbitrarily complex 3D geometries specified in any unambiguous form can be used. The RAGE computational environment is any of several massively parallel computers being developed under the Department Of Energy's Accelerated Strategic Computing Initiative. A typical 3D RAGE analysis may contain 100 million cells and occupy 2000 processors for several weeks. RAGE grid generation is embarrassingly parallel. The RAGE computational grid is an octree decomposition of the model space. The problem domain is subdivided into as many subdomains as the number of processors assigned to the problem. The grid for each subdomain is then generated independently, except for occasional adjustments. Geometry used for initial grid generation includes CSG combinations of NURBS-based boundary representation models, stereo lithography (STL) files, implicit surfaces, and functionally perturbed surfaces.
NASA Astrophysics Data System (ADS)
Petersson, Anders; Rodgers, Arthur
2010-05-01
The finite difference method on a uniform Cartesian grid is a highly efficient and easy to implement technique for solving the elastic wave equation in seismic applications. However, the spacing in a uniform Cartesian grid is fixed throughout the computational domain, whereas the resolution requirements in realistic seismic simulations usually are higher near the surface than at depth. This can be seen from the well-known formula h ≤ L-P which relates the grid spacing h to the wave length L, and the required number of grid points per wavelength P for obtaining an accurate solution. The compressional and shear wave lengths in the earth generally increase with depth and are often a factor of ten larger below the Moho discontinuity (at about 30 km depth), than in sedimentary basins near the surface. A uniform grid must have a grid spacing based on the small wave lengths near the surface, which results in over-resolving the solution at depth. As a result, the number of points in a uniform grid is unnecessarily large. In the wave propagation project (WPP) code, we address the over-resolution-at-depth issue by generalizing our previously developed single grid finite difference scheme to work on a composite grid consisting of a set of structured rectangular grids of different spacings, with hanging nodes on the grid refinement interfaces. The computational domain in a regional seismic simulation often extends to depth 40-50 km. Hence, using a refinement ratio of two, we need about three grid refinements from the bottom of the computational domain to the surface, to keep the local grid size in approximate parity with the local wave lengths. The challenge of the composite grid approach is to find a stable and accurate method for coupling the solution across the grid refinement interface. Of particular importance is the treatment of the solution at the hanging nodes, i.e., the fine grid points which are located in between coarse grid points. WPP implements a new, energy
Progress Toward Overset-Grid Moving Body Capability for USM3D Unstructured Flow Solver
NASA Technical Reports Server (NTRS)
Pandyna, Mohagna J.; Frink, Neal T.; Noack, Ralph W.
2005-01-01
A static and dynamic Chimera overset-grid capability is added to an established NASA tetrahedral unstructured parallel Navier-Stokes flow solver, USM3D. Modifications to the solver primarily consist of a few strategic calls to the Donor interpolation Receptor Transaction library (DiRTlib) to facilitate communication of solution information between various grids. The assembly of multiple overlapping grids into a single-zone composite grid is performed by the Structured, Unstructured and Generalized Grid AssembleR (SUGGAR) code. Several test cases are presented to verify the implementation, assess overset-grid solution accuracy and convergence relative to single-grid solutions, and demonstrate the prescribed relative grid motion capability.
NASA Astrophysics Data System (ADS)
Sato, Norikazu; Takeuchi, Shintaro; Kajishima, Takeo; Inagaki, Masahide; Horinouchi, Nariaki
2016-09-01
A new discretization scheme on Cartesian grids, namely, a "consistent direct discretization scheme", is proposed for solving incompressible flows with convective and conjugate heat transfer around a solid object. The Navier-Stokes and the pressure Poisson equations are discretized directly even in the immediate vicinity of a solid boundary with the aid of the consistency between the face-velocity and the pressure gradient. From verifications in fundamental flow problems, the present method is found to significantly improve the accuracy of the velocity and the wall shear stress. It is also confirmed that the numerical results are less sensitive to the Courant number owing to the consistency between the velocity and pressure fields. The concept of the consistent direct discretization scheme is also explored for the thermal field; the energy equations for the fluid and solid phases are discretized directly while satisfying the thermal relations that should be valid at their interface. It takes different forms depending on the thermal boundary conditions: Dirichlet (isothermal) and Neumann (adiabatic/iso-heat-flux) boundary conditions for convective heat transfer and a fluid-solid thermal interaction for conjugate heat transfer. The validity of these discretizations is assessed by comparing the simulated results with analytical solutions for the respective thermal boundary conditions, and it is confirmed that the present schemes also show high accuracy for the thermal field. A significant improvement for the conjugate heat transfer problems is that the second-order spatial accuracy and numerical stability are maintained even under severe conditions of near-practical physical properties for the fluid and solid phases.
Aeroacoustic Simulation of Nose Landing Gear on Adaptive Unstructured Grids With FUN3D
NASA Technical Reports Server (NTRS)
Vatsa, Veer N.; Khorrami, Mehdi R.; Park, Michael A.; Lockhard, David P.
2013-01-01
Numerical simulations have been performed for a partially-dressed, cavity-closed nose landing gear configuration that was tested in NASA Langley s closed-wall Basic Aerodynamic Research Tunnel (BART) and in the University of Florida's open-jet acoustic facility known as the UFAFF. The unstructured-grid flow solver FUN3D, developed at NASA Langley Research center, is used to compute the unsteady flow field for this configuration. Starting with a coarse grid, a series of successively finer grids were generated using the adaptive gridding methodology available in the FUN3D code. A hybrid Reynolds-averaged Navier-Stokes/large eddy simulation (RANS/LES) turbulence model is used for these computations. Time-averaged and instantaneous solutions obtained on these grids are compared with the measured data. In general, the correlation with the experimental data improves with grid refinement. A similar trend is observed for sound pressure levels obtained by using these CFD solutions as input to a FfowcsWilliams-Hawkings noise propagation code to compute the farfield noise levels. In general, the numerical solutions obtained on adapted grids compare well with the hand-tuned enriched fine grid solutions and experimental data. In addition, the grid adaption strategy discussed here simplifies the grid generation process, and results in improved computational efficiency of CFD simulations.
Generation and adaptation of 3-D unstructured grids for transient problems
NASA Technical Reports Server (NTRS)
Loehner, Rainald
1990-01-01
Grid generation and adaptive refinement techniques suitable for the simulation of strongly unsteady flows past geometrically complex bodies in 3-D are described. The grids are generated using the advancing front technique. Emphasis is placed not to generate elements that are too small, as this would severely increase the cost of simulations with explicit flow solvers. The grids are adapted to an evolving flowfield using simple h-refinement. A grid change is performed every 5 to 10 timesteps, and only one level of refinement/coarsening is allowed per mesh change.
A Laplacian Equation Method for Numerical Generation of Boundary-Fitted 3D Orthogonal Grids
NASA Astrophysics Data System (ADS)
Theodoropoulos, T.; Bergeles, G. C.
1989-06-01
A sethod for generating boundary fitted orthogonal curvilinear grids in 3-dimensional space is described. The mapping between the curvilinear coordinates and the Cartesian coordinates is provided by a set of Laplace equations which, expressed in curvilinear coordinates, involve the components of the metric tensor and are therefore non-linear and coupled. An iterative algorithm is described, which achieves a numerical solution. Grids appropriate for the calculation of flow fields over complex topography or in complex flow passages as those found in turbomachinery, and for other engineering applications can be constructed using the proposed method. Various examples are presented and plotted in perspective, and data for the assessment of the properties of the resulting meshes is provided.
Grid-Adapted FUN3D Computations for the Second High Lift Prediction Workshop
NASA Technical Reports Server (NTRS)
Lee-Rausch, E. M.; Rumsey, C. L.; Park, M. A.
2014-01-01
Contributions of the unstructured Reynolds-averaged Navier-Stokes code FUN3D to the 2nd AIAA CFD High Lift Prediction Workshop are described, and detailed comparisons are made with experimental data. Using workshop-supplied grids, results for the clean wing configuration are compared with results from the structured code CFL3D Using the same turbulence model, both codes compare reasonably well in terms of total forces and moments, and the maximum lift is similarly over-predicted for both codes compared to experiment. By including more representative geometry features such as slat and flap brackets and slat pressure tube bundles, FUN3D captures the general effects of the Reynolds number variation, but under-predicts maximum lift on workshop-supplied grids in comparison with the experimental data, due to excessive separation. However, when output-based, off-body grid adaptation in FUN3D is employed, results improve considerably. In particular, when the geometry includes both brackets and the pressure tube bundles, grid adaptation results in a more accurate prediction of lift near stall in comparison with the wind-tunnel data. Furthermore, a rotation-corrected turbulence model shows improved pressure predictions on the outboard span when using adapted grids.
NASA Technical Reports Server (NTRS)
Shih, T. I.-P.; Bailey, R. T.; Nguyen, H. L.; Roelke, R. J.
1990-01-01
An efficient computer program, called GRID2D/3D was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no
Hierarchical octree and k-d tree grids for 3D radiative transfer simulations
NASA Astrophysics Data System (ADS)
Saftly, W.; Baes, M.; Camps, P.
2014-01-01
Context. A crucial ingredient for numerically solving the three-dimensional radiative transfer problem is the choice of the grid that discretizes the transfer medium. Many modern radiative transfer codes, whether using Monte Carlo or ray tracing techniques, are equipped with hierarchical octree-based grids to accommodate a wide dynamic range in densities. Aims: We critically investigate two different aspects of octree grids in the framework of Monte Carlo dust radiative transfer. Inspired by their common use in computer graphics applications, we test hierarchical k-d tree grids as an alternative for octree grids. On the other hand, we investigate which node subdivision-stopping criteria are optimal for constructing of hierarchical grids. Methods: We implemented a k-d tree grid in the 3D radiative transfer code SKIRT and compared it with the previously implemented octree grid. We also considered three different node subdivision-stopping criteria (based on mass, optical depth, and density gradient thresholds). Based on a small suite of test models, we compared the efficiency and accuracy of the different grids, according to various quality metrics. Results: For a given set of requirements, the k-d tree grids only require half the number of cells of the corresponding octree. Moreover, for the same number of grid cells, the k-d tree is characterized by higher discretization accuracy. Concerning the subdivision stopping criteria, we find that an optical depth criterion is not a useful alternative to the more standard mass threshold, since the resulting grids show a poor accuracy. Both criteria can be combined; however, in the optimal combination, for which we provide a simple approximate recipe, this can lead to a 20% reduction in the number of cells needed to reach a certain grid quality. An additional density gradient threshold criterion can be added that solves the problem of poorly resolving sharp edges and strong density gradients. Conclusions: We advocate the use
Toward Verification of USM3D Extensions for Mixed Element Grids
NASA Technical Reports Server (NTRS)
Pandya, Mohagna J.; Frink, Neal T.; Ding, Ejiang; Parlette, Edward B.
2013-01-01
The unstructured tetrahedral grid cell-centered finite volume flow solver USM3D has been recently extended to handle mixed element grids composed of hexahedral, prismatic, pyramidal, and tetrahedral cells. Presently, two turbulence models, namely, baseline Spalart-Allmaras (SA) and Menter Shear Stress Transport (SST), support mixed element grids. This paper provides an overview of the various numerical discretization options available in the newly enhanced USM3D. Using the SA model, the flow solver extensions are verified on three two-dimensional test cases available on the Turbulence Modeling Resource website at the NASA Langley Research Center. The test cases are zero pressure gradient flat plate, planar shear, and bump-inchannel. The effect of cell topologies on the flow solution is also investigated using the planar shear case. Finally, the assessment of various cell and face gradient options is performed on the zero pressure gradient flat plate case.
NASA Astrophysics Data System (ADS)
Miao, Sha; Hendrickson, Kelli; Liu, Yuming; Subramani, Hariprasad
2015-11-01
This work presents a novel and efficient Cartesian-grid based simulation capability for the study of an incompressible, turbulent gas layer over a liquid flow with disparate Reynolds numbers in two phases. This capability couples a turbulent gas-flow solver and a liquid-layer based on a second-order accurate Boundary Data Immersion Method (BDIM) at the deformable interface. The turbulent gas flow solver solves the incompressible Navier-Stokes equations via direct numerical simulation or through turbulence closure (unsteady Reynolds-Averaged Navier-Stokes Models) for Reynolds numbers O(106). In this application, a laminar liquid layer solution is obtained from depth-integrated Navier-Stokes equations utilizing shallow water wave assumptions. The immersed boundary method (BDIM) enforces the coupling at the deformable interface, the boundary conditions to turbulence closure equations and defines the domain geometry on the Cartesian grid. Validations are made for the turbulent gas channel flow over high-viscosity liquid. This simulation capability can be applied to problems in the oil and industrial sector such as channel and pipe flows with heavy oils as well as wind wave generation in shallow waters. Sponsored by the Chevron Energy Technology Company.
Vertical Scan (V-SCAN) for 3-D Grid Adaptive Mesh Refinement for an atmospheric Model Dynamical Core
NASA Astrophysics Data System (ADS)
Andronova, N. G.; Vandenberg, D.; Oehmke, R.; Stout, Q. F.; Penner, J. E.
2009-12-01
One of the major building blocks of a rigorous representation of cloud evolution in global atmospheric models is a parallel adaptive grid MPI-based communication library (an Adaptive Blocks for Locally Cartesian Topologies library -- ABLCarT), which manages the block-structured data layout, handles ghost cell updates among neighboring blocks and splits a block as refinements occur. The library has several modules that provide a layer of abstraction for adaptive refinement: blocks, which contain individual cells of user data; shells - the global geometry for the problem, including a sphere, reduced sphere, and now a 3D sphere; a load balancer for placement of blocks onto processors; and a communication support layer which encapsulates all data movement. A major performance concern with adaptive mesh refinement is how to represent calculations that have need to be sequenced in a particular order in a direction, such as calculating integrals along a specific path (e.g. atmospheric pressure or geopotential in the vertical dimension). This concern is compounded if the blocks have varying levels of refinement, or are scattered across different processors, as can be the case in parallel computing. In this paper we describe an implementation in ABLCarT of a vertical scan operation, which allows computing along vertical paths in the correct order across blocks transparent to their resolution and processor location. We test this functionality on a 2D and a 3D advection problem, which tests the performance of the model’s dynamics (transport) and physics (sources and sinks) for different model resolutions needed for inclusion of cloud formation.
FUN3D Grid Refinement and Adaptation Studies for the Ares Launch Vehicle
NASA Technical Reports Server (NTRS)
Bartels, Robert E.; Vasta, Veer; Carlson, Jan-Renee; Park, Mike; Mineck, Raymond E.
2010-01-01
This paper presents grid refinement and adaptation studies performed in conjunction with computational aeroelastic analyses of the Ares crew launch vehicle (CLV). The unstructured grids used in this analysis were created with GridTool and VGRID while the adaptation was performed using the Computational Fluid Dynamic (CFD) code FUN3D with a feature based adaptation software tool. GridTool was developed by ViGYAN, Inc. while the last three software suites were developed by NASA Langley Research Center. The feature based adaptation software used here operates by aligning control volumes with shock and Mach line structures and by refining/de-refining where necessary. It does not redistribute node points on the surface. This paper assesses the sensitivity of the complex flow field about a launch vehicle to grid refinement. It also assesses the potential of feature based grid adaptation to improve the accuracy of CFD analysis for a complex launch vehicle configuration. The feature based adaptation shows the potential to improve the resolution of shocks and shear layers. Further development of the capability to adapt the boundary layer and surface grids of a tetrahedral grid is required for significant improvements in modeling the flow field.
Simulations of implosions with a 3D, parallel, unstructured-grid, radiation-hydrodynamics code
Kaiser, T B; Milovich, J L; Prasad, M K; Rathkopf, J; Shestakov, A I
1998-12-28
An unstructured-grid, radiation-hydrodynamics code is used to simulate implosions. Although most of the problems are spherically symmetric, they are run on 3D, unstructured grids in order to test the code's ability to maintain spherical symmetry of the converging waves. Three problems, of increasing complexity, are presented. In the first, a cold, spherical, ideal gas bubble is imploded by an enclosing high pressure source. For the second, we add non-linear heat conduction and drive the implosion with twelve laser beams centered on the vertices of an icosahedron. In the third problem, a NIF capsule is driven with a Planckian radiation source.
NASA Astrophysics Data System (ADS)
Chung, Eric T.; Ciarlet, Patrick; Yu, Tang Fei
2013-02-01
In this paper, a new type of staggered discontinuous Galerkin methods for the three dimensional Maxwell’s equations is developed and analyzed. The spatial discretization is based on staggered Cartesian grids so that many good properties are obtained. First of all, our method has the advantages that the numerical solution preserves the electromagnetic energy and automatically fulfills a discrete version of the Gauss law. Moreover, the mass matrices are diagonal, thus time marching is explicit and is very efficient. Our method is high order accurate and the optimal order of convergence is rigorously proved. It is also very easy to implement due to its Cartesian structure and can be regarded as a generalization of the classical Yee’s scheme as well as the quadrilateral edge finite elements. Furthermore, a superconvergence result, that is the convergence rate is one order higher at interpolation nodes, is proved. Numerical results are shown to confirm our theoretical statements, and applications to problems in unbounded domains with the use of PML are presented. A comparison of our staggered method and non-staggered method is carried out and shows that our method has better accuracy and efficiency.
NASA Technical Reports Server (NTRS)
Parikh, Paresh; Pirzadeh, Shahyar; Loehner, Rainald
1990-01-01
A set of computer programs for 3-D unstructured grid generation, fluid flow calculations, and flow field visualization was developed. The grid generation program, called VGRID3D, generates grids over complex configurations using the advancing front method. In this method, the point and element generation is accomplished simultaneously, VPLOT3D is an interactive, menudriven pre- and post-processor graphics program for interpolation and display of unstructured grid data. The flow solver, VFLOW3D, is an Euler equation solver based on an explicit, two-step, Taylor-Galerkin algorithm which uses the Flux Corrected Transport (FCT) concept for a wriggle-free solution. Using these programs, increasingly complex 3-D configurations of interest to aerospace community were gridded including a complete Space Transportation System comprised of the space-shuttle orbitor, the solid-rocket boosters, and the external tank. Flow solutions were obtained on various configurations in subsonic, transonic, and supersonic flow regimes.
Akçakaya, Mehmet; Nam, Seunghoon; Basha, Tamer A.; Kawaji, Keigo; Tarokh, Vahid; Nezafat, Reza
2014-01-01
Background Non-Cartesian trajectories are used in a variety of fast imaging applications, due to the incoherent image domain artifacts they create when undersampled. While the gridding technique is commonly utilized for reconstruction, the incoherent artifacts may be further removed using compressed sensing (CS). CS reconstruction is typically done using conjugate-gradient (CG) type algorithms, which require gridding and regridding to be performed at every iteration. This leads to a large computational overhead that hinders its applicability. Methods We sought to develop an alternative method for CS reconstruction that only requires two gridding and one regridding operation in total, irrespective of the number of iterations. This proposed technique is evaluated on phantom images and whole-heart coronary MRI acquired using 3D radial trajectories, and compared to conventional CS reconstruction using CG algorithms in terms of quantitative vessel sharpness, vessel length, computation time, and convergence rate. Results Both CS reconstructions result in similar vessel length (P = 0.30) and vessel sharpness (P = 0.62). The per-iteration complexity of the proposed technique is approximately 3-fold lower than the conventional CS reconstruction (17.55 vs. 52.48 seconds in C++). Furthermore, for in-vivo datasets, the convergence rate of the proposed technique is faster (60±13 vs. 455±320 iterations) leading to a ∼23-fold reduction in reconstruction time. Conclusions The proposed reconstruction provides images of similar quality to the conventional CS technique in terms of removing artifacts, but at a much lower computational complexity. PMID:25215945
Fast Probabilistic Fusion of 3d Point Clouds via Occupancy Grids for Scene Classification
NASA Astrophysics Data System (ADS)
Kuhn, Andreas; Huang, Hai; Drauschke, Martin; Mayer, Helmut
2016-06-01
High resolution consumer cameras on Unmanned Aerial Vehicles (UAVs) allow for cheap acquisition of highly detailed images, e.g., of urban regions. Via image registration by means of Structure from Motion (SfM) and Multi View Stereo (MVS) the automatic generation of huge amounts of 3D points with a relative accuracy in the centimeter range is possible. Applications such as semantic classification have a need for accurate 3D point clouds, but do not benefit from an extremely high resolution/density. In this paper, we, therefore, propose a fast fusion of high resolution 3D point clouds based on occupancy grids. The result is used for semantic classification. In contrast to state-of-the-art classification methods, we accept a certain percentage of outliers, arguing that they can be considered in the classification process when a per point belief is determined in the fusion process. To this end, we employ an octree-based fusion which allows for the derivation of outlier probabilities. The probabilities give a belief for every 3D point, which is essential for the semantic classification to consider measurement noise. For an example point cloud with half a billion 3D points (cf. Figure 1), we show that our method can reduce runtime as well as improve classification accuracy and offers high scalability for large datasets.
The Stagger-grid: A grid of 3D stellar atmosphere models. I. Methods and general properties
NASA Astrophysics Data System (ADS)
Magic, Z.; Collet, R.; Asplund, M.; Trampedach, R.; Hayek, W.; Chiavassa, A.; Stein, R. F.; Nordlund, Å.
2013-09-01
Aims: We present the Stagger-grid, a comprehensive grid of time-dependent, three-dimensional (3D), hydrodynamic model atmospheres for late-type stars with realistic treatment of radiative transfer, covering a wide range in stellar parameters. This grid of 3D models is intended for various applications besides studies of stellar convection and atmospheres per se, including stellar parameter determination, stellar spectroscopy and abundance analysis, asteroseismology, calibration of stellar evolution models, interferometry, and extrasolar planet search. In this introductory paper, we describe the methods we applied for the computation of the grid and discuss the general properties of the 3D models as well as of their temporal and spatial averages (here denoted ⟨3D⟩ models). Methods: All our models were generated with the Stagger-code, using realistic input physics for the equation of state (EOS) and for continuous and line opacities. Our ~ 220 grid models range in effective temperature, Teff, from 4000 to 7000 K in steps of 500 K, in surface gravity, log g, from 1.5 to 5.0 in steps of 0.5 dex, and metallicity, [Fe/H], from - 4.0 to + 0.5 in steps of 0.5 and 1.0 dex. Results: We find a tight scaling relation between the vertical velocity and the surface entropy jump, which itself correlates with the constant entropy value of the adiabatic convection zone. The range in intensity contrast is enhanced at lower metallicity. The granule size correlates closely with the pressure scale height sampled at the depth of maximum velocity. We compare the ⟨3D⟩ models with currently widely applied one-dimensional (1D) atmosphere models, as well as with theoretical 1D hydrostatic models generated with the same EOS and opacity tables as the 3D models, in order to isolate the effects of using self-consistent and hydrodynamic modeling of convection, rather than the classical mixing length theory approach. For the first time, we are able to quantify systematically over a broad
An iterative KP1 method for solving the transport equation in 3D domains on unstructured grids
NASA Astrophysics Data System (ADS)
Kokonkov, N. I.; Nikolaeva, O. V.
2015-10-01
A two-step iterative KP1 method for solving systems of grid equations that approximate the integro-differential transport equation in 3D domains on unstructured grids using nodal SN methods is described. Results of testing the efficiency of the proposed method in solving benchmark problems of reactor protection on tetrahedral grids are presented.
Cartesian grid simulations of bubbling fluidized beds with a horizontal tube bundle
Li, Tingwen; Dietiker, Jean-Francois; Zhang, Yongmin; Shahnam, Mehrdad
2011-12-01
In this paper, the flow hydrodynamics in a bubbling fluidized bed with submerged horizontal tube bundle was numerically investigated with an open-source code: Multiphase Flow with Interphase eXchange (MFIX). A newly implemented cut-cell technique was employed to deal with the curved surface of submerged tubes. A series of 2D simulations were conducted to study the effects of gas velocity and tube arrangement on the flow pattern. Hydrodynamic heterogeneities on voidage, particle velocity, bubble fraction, and frequency near the tube circumferential surface were successfully predicted by this numerical method, which agrees qualitatively with previous experimental findings and contributes to a sounder understanding of the non-uniform heat transfer and erosion around a horizontal tube. A 3D simulation was also conducted. Significant differences between 2D and 3D simulations were observed with respect to bed expansion, bubble distribution, voidage, and solids velocity profiles. Hence, the 3D simulation is needed for quantitative prediction of flow hydrodynamics. On the other hand, the flow characteristics and bubble behavior at the tube surface are similar under both 2D and 3D simulations as far as the bubble frequency and bubble phase fraction are concerned. Comparison with experimental data showed that qualitative agreement was obtained in both 2D and 3D simulations for the bubble characteristics at the tube surface.
USM3D Unstructured Grid Solutions for CAWAPI at NASA LaRC
NASA Technical Reports Server (NTRS)
Lamar, John E.; Abdol-Hamid, Khaled S.
2007-01-01
In support the Cranked Arrow Wing Aerodynamic Project International (CAWAPI) to improve the Technology Readiness Level of flow solvers by comparing results with measured F-16XL-1 flight data, NASA Langley employed the TetrUSS unstructured grid solver, USM3D, to obtain solutions for all seven flight conditions of interest. A newly available solver version that incorporates a number of turbulence models, including the two-equation linear and non-linear k-epsilon, was used in this study. As a first test, a choice was made to utilize only a single grid resolution with the solver for the simulation of the different flight conditions. Comparisons are presented with three turbulence models in USM3D, flight data for surface pressure, boundary-layer profiles, and skin-friction results, as well as limited predictions from other solvers. A result of these comparisons is that the USM3D solver can be used in an engineering environment to predict flow physics on a complex configuration at flight Reynolds numbers with a two-equation linear k-epsilon turbulence model.
3D magnetospheric parallel hybrid multi-grid method applied to planet-plasma interactions
NASA Astrophysics Data System (ADS)
Leclercq, L.; Modolo, R.; Leblanc, F.; Hess, S.; Mancini, M.
2016-03-01
We present a new method to exploit multiple refinement levels within a 3D parallel hybrid model, developed to study planet-plasma interactions. This model is based on the hybrid formalism: ions are kinetically treated whereas electrons are considered as a inertia-less fluid. Generally, ions are represented by numerical particles whose size equals the volume of the cells. Particles that leave a coarse grid subsequently entering a refined region are split into particles whose volume corresponds to the volume of the refined cells. The number of refined particles created from a coarse particle depends on the grid refinement rate. In order to conserve velocity distribution functions and to avoid calculations of average velocities, particles are not coalesced. Moreover, to ensure the constancy of particles' shape function sizes, the hybrid method is adapted to allow refined particles to move within a coarse region. Another innovation of this approach is the method developed to compute grid moments at interfaces between two refinement levels. Indeed, the hybrid method is adapted to accurately account for the special grid structure at the interfaces, avoiding any overlapping grid considerations. Some fundamental test runs were performed to validate our approach (e.g. quiet plasma flow, Alfven wave propagation). Lastly, we also show a planetary application of the model, simulating the interaction between Jupiter's moon Ganymede and the Jovian plasma.
Visualizer: 3D Gridded Data Visualization Software for Geoscience Education and Research
NASA Astrophysics Data System (ADS)
Harwood, C.; Billen, M. I.; Kreylos, O.; Jadamec, M.; Sumner, D. Y.; Kellogg, L. H.; Hamann, B.
2008-12-01
In both research and education learning is an interactive and iterative process of exploring and analyzing data or model results. However, visualization software often presents challenges on the path to learning because it assumes the user already knows the locations and types of features of interest, instead of enabling flexible and intuitive examination of results. We present examples of research and teaching using the software, Visualizer, specifically designed to create an effective and intuitive environment for interactive, scientific analysis of 3D gridded data. Visualizer runs in a range of 3D virtual reality environments (e.g., GeoWall, ImmersaDesk, or CAVE), but also provides a similar level of real-time interactivity on a desktop computer. When using Visualizer in a 3D-enabled environment, the software allows the user to interact with the data images as real objects, grabbing, rotating or walking around the data to gain insight and perspective. On the desktop, simple features, such as a set of cross-bars marking the plane of the screen, provide extra 3D spatial cues that allow the user to more quickly understand geometric relationships within the data. This platform portability allows the user to more easily integrate research results into classroom demonstrations and exercises, while the interactivity provides an engaging environment for self-directed and inquiry-based learning by students. Visualizer software is freely available for download (www.keckcaves.org) and runs on Mac OSX and Linux platforms.
Fast and efficient particle reconstruction on a 3D grid using sparsity
NASA Astrophysics Data System (ADS)
Cornic, P.; Champagnat, F.; Cheminet, A.; Leclaire, B.; Le Besnerais, G.
2015-03-01
We propose an approach for efficient localization and intensity reconstruction of particles on a 3D grid based on sparsity principles. The computational complexity of the method is limited by using the particle volume reconstruction paradigm (Champagnat et al. in Meas Sci Technol 25, 2014) and a reduction in the problem dimension. Tests on synthetic and experimental data show that the proposed method leads to more efficient detections and to reconstructions of higher quality than classical tomoPIV approaches on a large range of seeding densities, up to ppp ≈ 0.12.
Technical Note: Rapid prototyping of 3D grid arrays for image guided therapy quality assurance
Kittle, David; Holshouser, Barbara; Slater, James M.; Guenther, Bob D.; Pitsianis, Nikos P.; Pearlstein, Robert D.
2008-12-15
Three dimensional grid phantoms offer a number of advantages for measuring imaging related spatial inaccuracies for image guided surgery and radiotherapy. The authors examined the use of rapid prototyping technology for directly fabricating 3D grid phantoms from CAD drawings. We tested three different fabrication process materials, photopolymer jet with acrylic resin (PJ/AR), selective laser sintering with polyamide (SLS/P), and fused deposition modeling with acrylonitrile butadiene styrene (FDM/ABS). The test objects consisted of rectangular arrays of control points formed by the intersections of posts and struts (2 mm rectangular cross section) and spaced 8 mm apart in the x, y, and z directions. The PJ/AR phantom expanded after immersion in water which resulted in permanent warping of the structure. The surface of the FDM/ABS grid exhibited a regular pattern of depressions and ridges from the extrusion process. SLS/P showed the best combination of build accuracy, surface finish, and stability. Based on these findings, a grid phantom for assessing machine-dependent and frame-induced MR spatial distortions was fabricated to be used for quality assurance in stereotactic neurosurgical and radiotherapy procedures. The spatial uniformity of the SLS/P grid control point array was determined by CT imaging (0.6x0.6x0.625 mm{sup 3} resolution) and found suitable for the application, with over 97.5% of the control points located within 0.3 mm of the position specified in CAD drawing and none of the points off by more than 0.4 mm. Rapid prototyping is a flexible and cost effective alternative for development of customized grid phantoms for medical physics quality assurance.
Aeroacoustic Simulations of a Nose Landing Gear Using FUN3D on Pointwise Unstructured Grids
NASA Technical Reports Server (NTRS)
Vatsa, Veer N.; Khorrami, Mehdi R.; Rhoads, John; Lockard, David P.
2015-01-01
Numerical simulations have been performed for a partially-dressed, cavity-closed (PDCC) nose landing gear configuration that was tested in the University of Florida's open-jet acoustic facility known as the UFAFF. The unstructured-grid flow solver FUN3D is used to compute the unsteady flow field for this configuration. Mixed-element grids generated using the Pointwise(TradeMark) grid generation software are used for these simulations. Particular care is taken to ensure quality cells and proper resolution in critical areas of interest in an effort to minimize errors introduced by numerical artifacts. A hybrid Reynolds-averaged Navier-Stokes/large eddy simulation (RANS/LES) turbulence model is used for these simulations. Solutions are also presented for a wall function model coupled to the standard turbulence model. Time-averaged and instantaneous solutions obtained on these Pointwise grids are compared with the measured data and previous numerical solutions. The resulting CFD solutions are used as input to a Ffowcs Williams-Hawkings noise propagation code to compute the farfield noise levels in the flyover and sideline directions. The computed noise levels compare well with previous CFD solutions and experimental data.
3D inversion based on multi-grid approach of magnetotelluric data from Northern Scandinavia
NASA Astrophysics Data System (ADS)
Cherevatova, M.; Smirnov, M.; Korja, T. J.; Egbert, G. D.
2012-12-01
In this work we investigate the geoelectrical structure of the cratonic margin of Fennoscandian Shield by means of magnetotelluric (MT) measurements carried out in Northern Norway and Sweden during summer 2011-2012. The project Magnetotellurics in the Scandes (MaSca) focuses on the investigation of the crust, upper mantle and lithospheric structure in a transition zone from a stable Precambrian cratonic interior to a passive continental margin beneath the Caledonian Orogen and the Scandes Mountains in western Fennoscandia. Recent MT profiles in the central and southern Scandes indicated a large contrast in resistivity between Caledonides and Precambrian basement. The alum shales as a highly conductive layers between the resistive Precambrian basement and the overlying Caledonian nappes are revealed from this profiles. Additional measurements in the Northern Scandes were required. All together data from 60 synchronous long period (LMT) and about 200 broad band (BMT) sites were acquired. The array stretches from Lofoten and Bodo (Norway) in the west to Kiruna and Skeleftea (Sweden) in the east covering an area of 500x500 square kilometers. LMT sites were occupied for about two months, while most of the BMT sites were measured during one day. We have used new multi-grid approach for 3D electromagnetic (EM) inversion and modelling. Our approach is based on the OcTree discretization where the spatial domain is represented by rectangular cells, each of which might be subdivided (recursively) into eight sub-cells. In this simplified implementation the grid is refined only in the horizontal direction, uniformly in each vertical layer. Using multi-grid we manage to have a high grid resolution near the surface (for instance, to tackle with galvanic distortions) and lower resolution at greater depth as the EM fields decay in the Earth according to the diffusion equation. We also have a benefit in computational costs as number of unknowns decrease. The multi-grid forward
Radiation Coupling with the FUN3D Unstructured-Grid CFD Code
NASA Technical Reports Server (NTRS)
Wood, William A.
2012-01-01
The HARA radiation code is fully-coupled to the FUN3D unstructured-grid CFD code for the purpose of simulating high-energy hypersonic flows. The radiation energy source terms and surface heat transfer, under the tangent slab approximation, are included within the fluid dynamic ow solver. The Fire II flight test, at the Mach-31 1643-second trajectory point, is used as a demonstration case. Comparisons are made with an existing structured-grid capability, the LAURA/HARA coupling. The radiative surface heat transfer rates from the present approach match the benchmark values within 6%. Although radiation coupling is the focus of the present work, convective surface heat transfer rates are also reported, and are seen to vary depending upon the choice of mesh connectivity and FUN3D ux reconstruction algorithm. On a tetrahedral-element mesh the convective heating matches the benchmark at the stagnation point, but under-predicts by 15% on the Fire II shoulder. Conversely, on a mixed-element mesh the convective heating over-predicts at the stagnation point by 20%, but matches the benchmark away from the stagnation region.
NASA Astrophysics Data System (ADS)
Trost, Nico; Jiménez, Javier; Imke, Uwe; Sanchez, Victor
2014-06-01
TWOPORFLOW is a thermo-hydraulic code based on a porous media approach to simulate single- and two-phase flow including boiling. It is under development at the Institute for Neutron Physics and Reactor Technology (INR) at KIT. The code features a 3D transient solution of the mass, momentum and energy conservation equations for two inter-penetrating fluids with a semi-implicit continuous Eulerian type solver. The application domain of TWOPORFLOW includes the flow in standard porous media and in structured porous media such as micro-channels and cores of nuclear power plants. In the latter case, the fluid domain is coupled to a fuel rod model, describing the heat flow inside the solid structure. In this work, detailed profiling tools have been utilized to determine the optimization potential of TWOPORFLOW. As a result, bottle-necks were identified and reduced in the most feasible way, leading for instance to an optimization of the water-steam property computation. Furthermore, an OpenMP implementation addressing the routines in charge of inter-phase momentum-, energy- and mass-coupling delivered good performance together with a high scalability on shared memory architectures. In contrast to that, the approach for distributed memory systems was to solve sub-problems resulting by the decomposition of the initial Cartesian geometry. Thread communication for the sub-problem boundary updates was accomplished by the Message Passing Interface (MPI) standard.
NASA Astrophysics Data System (ADS)
Le Chenadec, Vincent; Bay, Yong Yi
2015-11-01
The treatment of complex geometries in Computational Fluid Dynamics applications is a challenging endeavor, which immersed boundary and cut-cell techniques can significantly simplify by alleviating the meshing process required by body-fitted meshes. These methods also introduce new challenges, in that the formulation of accurate and well-posed discrete operators is not trivial. A cut-cell method for the solution of the incompressible Navier-Stokes equation is proposed for staggered Cartesian grids. In both scalar and vector cases, the emphasis is set on the structure of the discrete operators, designed to mimic the properties of the continuous ones while retaining a nearest-neighbor stencil. For convective transport, different forms are proposed (divergence, advective and skew-symmetric), and shown to be equivalent when the discrete continuity equation is satisfied. This ensures mass, momentum and kinetic energy conservation. For diffusive transport, conservative and symmetric operators are proposed for both Dirichlet and Neumann boundary conditions. Symmetry ensures the existence of a sink term (viscous dissipation) in the discrete kinetic energy budget, which is beneficial for stability. The accuracy of method is finally assessed in standard test cases.
NASA Astrophysics Data System (ADS)
Tran, L. B.; Udaykumar, H. S.
2004-01-01
An Eulerian, sharp interface, Cartesian grid method is developed for the numerical simulation of the response of materials to impact, shocks and detonations. The mass, momentum, and energy equations are solved along with evolution equations for deviatoric stresses and equivalent plastic strain. These equations are cast in Eulerian conservation law form. The Mie-Grüneisen equation of state is used to obtain pressure and the material is modeled as a Johnson-Cook solid. The ENO scheme is employed to capture shocks in combination with a hybrid particle level set technique to evolve sharp immersed boundaries. The numerical technique is able to handle collisions between multiple materials and can accurately compute the dynamics of the immersed boundaries. Results of calculations for axisymmetric Taylor bar impact and penetration of a Tungsten rod into steel plate show good agreement with moving finite element solutions and experimental results. Qualitative agreement with theory is shown for the void collapse phenomenon in an impacted material containing a spherical void.
Mapping Nearby Terrain in 3D by Use of a Grid of Laser Spots
NASA Technical Reports Server (NTRS)
Padgett, Curtis; Liebe, Carl; Chang, Johnny; Brown, Kenneth
2007-01-01
A proposed optoelectronic system, to be mounted aboard an exploratory robotic vehicle, would be used to generate a three-dimensional (3D) map of nearby terrain and obstacles for purposes of navigating the vehicle across the terrain and avoiding the obstacles. The difference between this system and the other systems would lie in the details of implementation. In this system, the illumination would be provided by a laser. The beam from the laser would pass through a two-dimensional diffraction grating, which would divide the beam into multiple beams propagating in different, fixed, known directions. These beams would form a grid of bright spots on the nearby terrain and obstacles. The centroid of each bright spot in the image would be computed. For each such spot, the combination of (1) the centroid, (2) the known direction of the light beam that produced the spot, and (3) the known baseline would constitute sufficient information for calculating the 3D position of the spot.
NASA Astrophysics Data System (ADS)
Finogenov, L. V.; Lemeshko, Yu A.; Zav'yalov, P. S.; Chugui, Yu V.
2007-06-01
Ensuring the safety and high operation reliability of nuclear reactors takes 100% inspection of geometrical parameters of fuel assemblies, which include the grid spacers performed as a cellular structure with fuel elements. The required grid spacer geometry of assembly in the transverse and longitudinal cross sections is extremely important for maintaining the necessary heat regime. A universal method for 3D grid spacer inspection using a diffractive optical element (DOE), which generates as the structural illumination a multiple-ring pattern on the inner surface of a grid spacer cell, is investigated. Using some DOEs one can inspect the nomenclature of all produced grids. A special objective has been developed for forming the inner surface cell image. The problems of diffractive elements synthesis, projecting optics calculation, adjusting methods as well as calibration of the experimental measuring system are considered. The algorithms for image processing for different constructive elements of grids (cell, channel hole, outer grid spacer rim) and the experimental results are presented.
Software for Automated Generation of Cartesian Meshes
NASA Technical Reports Server (NTRS)
Aftosmis, Michael J.; Melton, John E.; Berger, Marshal J.
2006-01-01
Cart3D is a collection of computer programs for generating Cartesian meshes [for computational fluid dynamics (CFD) and other applications] in volumes bounded by solid objects. Aspects of Cart3D at earlier stages of development were reported in "Robust and Efficient Generation of Cartesian Meshes for CFD" (ARC-14275), NASA Tech Briefs, Vol. 23, No. 8 (August 1999), page 30. The geometric input to Cart3D comprises surface triangulations like those commonly generated by computer-aided-design programs. Complexly shaped objects can be represented as assemblies of simpler ones. Cart3D deletes all portions of such an assembled object that are not on the exterior surface. Intersections between components are preserved in the resulting triangulation. A tie-breaking routine unambiguously resolves geometric degeneracies. Then taking the intersected surface triangulation as input, the volume mesh is generated through division of cells of an initially coarse hexahedral grid. Cells are subdivided to refine the grid in regions of increased surface curvature and/or increased flow gradients. Cells that become split into multiple unconnected regions by thin pieces of surface are identified.
Granulation properties of giants, dwarfs, and white dwarfs from the CIFIST 3D model atmosphere grid
NASA Astrophysics Data System (ADS)
Tremblay, P.-E.; Ludwig, H.-G.; Freytag, B.; Steffen, M.; Caffau, E.
2013-09-01
Three-dimensional model atmospheres for giants, dwarfs, and white dwarfs, computed with the CO5BOLD code and part of the CIFIST grid, have been used for spectroscopic and asteroseismic studies. Unlike existing plane-parallel 1D structures, these simulations predict the spatially and temporally resolved emergent intensity so that granulation can be analysed, which provides insights on how convective energy transfer operates in stars. The wide range of atmospheric parameters of the CIFIST 3D simulations (3600 < Teff (K) < 13 000 and 1 < log g < 9) allows the comparison of convective processes in significantly different environments. We show that the relative intensity contrast is correlated with both the Mach and Péclet numbers in the photosphere. The horizontal size of granules varies between 3 and 10 times the local pressure scale height, with a tight correlation between the factor and the Mach number of the flow. Given that convective giants, dwarfs, and white dwarfs cover the same range of Mach and Péclet numbers, we conclude that photospheric convection operates in a very similar way in those objects. Table 1 and Appendix A are available in electronic form at http://www.aanda.org
Edler, Dennis; Bestgen, Anne-Kathrin; Kuchinke, Lars; Dickmann, Frank
2015-01-01
Cognitive representations of learned map information are subject to systematic distortion errors. Map elements that divide a map surface into regions, such as content-related linear symbols (e.g. streets, rivers, railway systems) or additional artificial layers (coordinate grids), provide an orientation pattern that can help users to reduce distortions in their mental representations. In recent years, the television industry has started to establish True-3D (autostereoscopic) displays as mass media. These modern displays make it possible to watch dynamic and static images including depth illusions without additional devices, such as 3D glasses. In these images, visual details can be distributed over different positions along the depth axis. Some empirical studies of vision research provided first evidence that 3D stereoscopic content attracts higher attention and is processed faster. So far, the impact of True-3D accentuating has not yet been explored concerning spatial memory tasks and cartography. This paper reports the results of two empirical studies that focus on investigations whether True-3D accentuating of artificial, regular overlaying line features (i.e. grids) and content-related, irregular line features (i.e. highways and main streets) in official urban topographic maps (scale 1/10,000) further improves human object location memory performance. The memory performance is measured as both the percentage of correctly recalled object locations (hit rate) and the mean distances of correctly recalled objects (spatial accuracy). It is shown that the True-3D accentuating of grids (depth offset: 5 cm) significantly enhances the spatial accuracy of recalled map object locations, whereas the True-3D emphasis of streets significantly improves the hit rate of recalled map object locations. These results show the potential of True-3D displays for an improvement of the cognitive representation of learned cartographic information. PMID:25679208
Edler, Dennis; Bestgen, Anne-Kathrin; Kuchinke, Lars; Dickmann, Frank
2015-01-01
Cognitive representations of learned map information are subject to systematic distortion errors. Map elements that divide a map surface into regions, such as content-related linear symbols (e.g. streets, rivers, railway systems) or additional artificial layers (coordinate grids), provide an orientation pattern that can help users to reduce distortions in their mental representations. In recent years, the television industry has started to establish True-3D (autostereoscopic) displays as mass media. These modern displays make it possible to watch dynamic and static images including depth illusions without additional devices, such as 3D glasses. In these images, visual details can be distributed over different positions along the depth axis. Some empirical studies of vision research provided first evidence that 3D stereoscopic content attracts higher attention and is processed faster. So far, the impact of True-3D accentuating has not yet been explored concerning spatial memory tasks and cartography. This paper reports the results of two empirical studies that focus on investigations whether True-3D accentuating of artificial, regular overlaying line features (i.e. grids) and content-related, irregular line features (i.e. highways and main streets) in official urban topographic maps (scale 1/10,000) further improves human object location memory performance. The memory performance is measured as both the percentage of correctly recalled object locations (hit rate) and the mean distances of correctly recalled objects (spatial accuracy). It is shown that the True-3D accentuating of grids (depth offset: 5 cm) significantly enhances the spatial accuracy of recalled map object locations, whereas the True-3D emphasis of streets significantly improves the hit rate of recalled map object locations. These results show the potential of True-3D displays for an improvement of the cognitive representation of learned cartographic information. PMID:25679208
NASA Technical Reports Server (NTRS)
Bailey, R. T.; Shih, T. I.-P.; Nguyen, H. L.; Roelke, R. J.
1990-01-01
An efficient computer program, called GRID2D/3D, was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no
VizieR Online Data Catalog: STAGGER-grid of 3D stellar models. IV. (Magic+, 2015)
NASA Astrophysics Data System (ADS)
Magic, Z.; Chiavassa, A.; Collet, R.; Asplund, M.
2014-10-01
We compute the emergent stellar spectra from the UV to far infrared for different viewing angles using realistic 3D model atmospheres for a large range in stellar parameters to predict the stellar limb darkening. We have computed full 3D LTE synthetic spectra based on 3D radiative hydrodynamic atmosphere models from the Stagger-grid in the ranges: Teff from 4000 to 7000K, logg from 1.5 to 5.0, and [Fe/H], from -4.0 to +0.5. From the resulting intensities at different wavelength, we derived coefficients for the standard limb darkening laws considering a number of often-used photometric filters. Furthermore, we calculated theoretical transit light curves, in order to quantify the differences between predictions by the widely used 1D model atmosphere and our 3D models. (1 data file).
NASA Astrophysics Data System (ADS)
Shashkin, Vladimir; Fadeev, Rostislav; Tolstykh, Mikhail
2016-01-01
The article presents conservative cascade scheme using reduced grid (CCS-RG) - a finite volume semi-Lagrangian (FVSL) algorithm for numerical solution of 3D advection equation on the sphere. The CCS-RG is based on the cascade approach that allows to split 3D advected quantity mass remapping between the Lagrangian and Eulerian grids onto 3 1D remappings. Another feature is using a quasi-uniform spaced reduced latitude-longitude grid on the sphere. The scheme is inherently mass-conservative, monotonic and stable with large time-steps. The CCS-RG performance is tested with the advection cases from the Dynamical Core Model Intercomparison Project test suite. The impact of the reduced grids and two different monotonic filters on the solution is investigated. The comparison with the results obtained by other schemes proves competitive accuracy of CCS-RG. In most cases, the numerical solution obtained with various reduced grids is as accurate as the regular grid solution.
Unstructured Grid Generation for Complex 3D High-Lift Configurations
NASA Technical Reports Server (NTRS)
Pirzadeh, Shahyar Z.
1999-01-01
The application of an unstructured grid methodology on a three-dimensional high-lift configuration is presented. The focus of this paper is on the grid generation aspect of an integrated effort for the development of an unstructured-grid computational fluid dynamics (CFD) capability at the NASA Langley Research Center. The meshing approach is based on tetrahedral grids generated by the advancing-front and the advancing-layers procedures. The capability of the method for solving high-lift problems is demonstrated on an aircraft model referred to as the energy efficient transport configuration. The grid generation issues, including the pros and cons of the present approach, are discussed in relation to the high-lift problems. Limited viscous flow results are presented to demonstrate the viability of the generated grids. A corresponding Navier-Stokes solution capability, along with further computations on the present grid, is presented in a companion SAE paper.
A Cartesian cut cell method for rarefied flow simulations around moving obstacles
NASA Astrophysics Data System (ADS)
Dechristé, G.; Mieussens, L.
2016-06-01
For accurate simulations of rarefied gas flows around moving obstacles, we propose a cut cell method on Cartesian grids: it allows exact conservation and accurate treatment of boundary conditions. Our approach is designed to treat Cartesian cells and various kinds of cut cells by the same algorithm, with no need to identify the specific shape of each cut cell. This makes the implementation quite simple, and allows a direct extension to 3D problems. Such simulations are also made possible by using an adaptive mesh refinement technique and a hybrid parallel implementation. This is illustrated by several test cases, including a 3D unsteady simulation of the Crookes radiometer.
Geometry modeling and grid generation using 3D NURBS control volume
NASA Technical Reports Server (NTRS)
Yu, Tzu-Yi; Soni, Bharat K.; Shih, Ming-Hsin
1995-01-01
The algorithms for volume grid generation using NURBS geometric representation are presented. The parameterization algorithm is enhanced to yield a desired physical distribution on the curve, surface and volume. This approach bridges the gap between CAD surface/volume definition and surface/volume grid generation. Computational examples associated with practical configurations have shown the utilization of these algorithms.
Visualization, analysis, and design of COMBO-FISH probes in the grid-based GLOBE 3D genome platform.
Kepper, Nick; Schmitt, Eberhard; Lesnussa, Michael; Weiland, Yanina; Eussen, Hubert B; Grosveld, Frank G; Hausmann, Michael; Knoch, Tobias A
2010-01-01
The genome architecture in cell nuclei plays an important role in modern microscopy for the monitoring of medical diagnosis and therapy since changes of function and dynamics of genes are interlinked with changing geometrical parameters. The planning of corresponding diagnostic experiments and their imaging is a complex and often interactive IT intensive challenge and thus makes high-performance grids a necessity. To detect genetic changes we recently developed a new form of fluorescence in situ hybridization (FISH) - COMBinatorial Oligonucleotide FISH (COMBO-FISH) - which labels small nucleotide sequences clustering at a desired genomic location. To achieve a unique hybridization spot other side clusters have to be excluded. Therefore, we have designed an interactive pipeline using the grid-based GLOBE 3D Genome Viewer and Platform to design and display different labelling variants of candidate probe sets. Thus, we have created a grid-based virtual "paper" tool for easy interactive calculation, analysis, management, and representation for COMBO-FISH probe design with many an advantage: Since all the calculations and analysis run in a grid, one can instantly and with great visual ease locate duplications of gene subsequences to guide the elimination of side clustering sequences during the probe design process, as well as get at least an impression of the 3D architectural embedding of the respective chromosome region, which is of major importance to estimate the hybridization probe dynamics. Beyond, even several people at different locations could work on the same process in a team wise manner. Consequently, we present how a complex interactive process can profit from grid infrastructure technology using our unique GLOBE 3D Genome Platform gateway towards a real interactive curative diagnosis planning and therapy monitoring. PMID:20543436
NASA Technical Reports Server (NTRS)
Lee-Rausch, Elizabeth M.; Hammond, Dana P.; Nielsen, Eric J.; Pirzadeh, S. Z.; Rumsey, Christopher L.
2010-01-01
FUN3D Navier-Stokes solutions were computed for the 4th AIAA Drag Prediction Workshop grid convergence study, downwash study, and Reynolds number study on a set of node-based mixed-element grids. All of the baseline tetrahedral grids were generated with the VGRID (developmental) advancing-layer and advancing-front grid generation software package following the gridding guidelines developed for the workshop. With maximum grid sizes exceeding 100 million nodes, the grid convergence study was particularly challenging for the node-based unstructured grid generators and flow solvers. At the time of the workshop, the super-fine grid with 105 million nodes and 600 million elements was the largest grid known to have been generated using VGRID. FUN3D Version 11.0 has a completely new pre- and post-processing paradigm that has been incorporated directly into the solver and functions entirely in a parallel, distributed memory environment. This feature allowed for practical pre-processing and solution times on the largest unstructured-grid size requested for the workshop. For the constant-lift grid convergence case, the convergence of total drag is approximately second-order on the finest three grids. The variation in total drag between the finest two grids is only 2 counts. At the finest grid levels, only small variations in wing and tail pressure distributions are seen with grid refinement. Similarly, a small wing side-of-body separation also shows little variation at the finest grid levels. Overall, the FUN3D results compare well with the structured-grid code CFL3D. The FUN3D downwash study and Reynolds number study results compare well with the range of results shown in the workshop presentations.
Efficient 3D Acoustic Numerical modeling in the Logarithmic-grid using the Expanding Domain Method
NASA Astrophysics Data System (ADS)
Hong, B. R.; Chung, W.; Ko, H.; Bae, H. S.
2015-12-01
In the numerical modeling of seismic wave propagation by the use of a discrete computing domain, dispersion analysis is preceded by the determination of the spatial grid spacings in order to ensure accurate modeling results. Grid spacing is a function of wavelength, and the wavelength depends on the minimum velocity and maximum source frequency. Therefore, as the frequency increases, the number of grids increase and this leads to computational overburden. In order to reduce the computing complexity, coordinate transformation techniques such as Riemannian coordinates and logarithmic grid sets are proposed. Riemannian wave-field extrapolation is a way to reformulate the wave-field by expressing it in Riemannian coordinates. In the logarithmic grid, grid spacing changes logarithmically, so this enables us to reduce the number of grids compared to a conventional grid set. Furthermore, this could completely remove boundary reflections by extending the model dimensions. However, numerical modeling in the logarithmic grid is still inefficient because it is performed for whole model at every individual time step. In this study we applied the expanding domain method to the logarithmic modeling in order to improve computational efficiency. This method, based on amplitude comparison, excludes computations for zero wave-fields by considering a non-zero domain boundary. Numerical examples demonstrated that our new modeling method enhances computational efficiency maintaining accuracy compared with conventional modeling methods. In wider and higher-order dimensions, particularly, the efficiency of our modeling method increased. Our new modeling technique could also be applied to the generation of underwater target echo signals requiring high frequency analysis.
Comparison of 2-D and 3-D models of grid erosion in an ion thruster
NASA Technical Reports Server (NTRS)
Peng, Xiaohang; Ruyten, Wilhelmus M.; Keefer, Dennis
1991-01-01
Numerical results of particle-in-cell/Monte Carlo calculations of accelerator grid erosion in an ion thruster are presented. Specifically, it is shown that a three-dimensional model is required to account for the experimentally observed pitting of the accelerator grid between grid apertures. Some comparisons with earlier two-dimensional, axisymmetric model are made, and it is shown that, for identical operating conditions of the thruster, the wear-through time in the three-dimensional model is about two to three times higher than that obtained previously with the two-dimensional model, namely on the order of 10,000 hours for sample calculation.
Einstein, Daniel R; Kuprat, Andrew P; Jiao, Xiangmin; Carson, James P; Einstein, David M; Jacob, Richard E; Corley, Richard A
2013-01-01
Geometries for organ scale and multiscale simulations of organ function are now routinely derived from imaging data. However, medical images may also contain spatially heterogeneous information other than geometry that are relevant to such simulations either as initial conditions or in the form of model parameters. In this manuscript, we present an algorithm for the efficient and robust mapping of such data to imaging-based unstructured polyhedral grids in parallel. We then illustrate the application of our mapping algorithm to three different mapping problems: (i) the mapping of MRI diffusion tensor data to an unstructured ventricular grid; (ii) the mapping of serial cyrosection histology data to an unstructured mouse brain grid; and (iii) the mapping of computed tomography-derived volumetric strain data to an unstructured multiscale lung grid. Execution times and parallel performance are reported for each case. PMID:23293066
Einstein, Daniel R.; Kuprat, Andrew P.; Jiao, Xiangmin; Carson, James P.; Einstein, David M.; Corley, Richard A.; Jacob, Rick E.
2013-01-01
Geometries for organ scale and multiscale simulations of organ function are now routinely derived from imaging data. However, medical images may also contain spatially heterogeneous information other than geometry that are relevant to such simulations either as initial conditions or in the form of model parameters. In this manuscript, we present an algorithm for the efficient and robust mapping of such data to imaging based unstructured polyhedral grids in parallel. We then illustrate the application of our mapping algorithm to three different mapping problems: 1) the mapping of MRI diffusion tensor data to an unstuctured ventricular grid; 2) the mapping of serial cyro-section histology data to an unstructured mouse brain grid; and 3) the mapping of CT-derived volumetric strain data to an unstructured multiscale lung grid. Execution times and parallel performance are reported for each case.
Numerical Simulation of Two-grid Ion Optics Using a 3D Code
NASA Technical Reports Server (NTRS)
Anderson, John R.; Katz, Ira; Goebel, Dan
2004-01-01
A three-dimensional ion optics code has been developed under NASA's Project Prometheus to model two grid ion optics systems. The code computes the flow of positive ions from the discharge chamber through the ion optics and into the beam downstream of the thruster. The rate at which beam ions interact with background neutral gas to form charge exchange ions is also computed. Charge exchange ion trajectories are computed to determine where they strike the ion optics grid surfaces and to determine the extent of sputter erosion they cause. The code has been used to compute predictions of the erosion pattern and wear rate on the NSTAR ion optics system; the code predicts the shape of the eroded pattern but overestimates the initial wear rate by about 50%. An example of use of the code to estimate the NEXIS thruster accelerator grid life is also presented.
Global 3D-Grids Based on Great Circle Arc QTM Sphere Octree and Its Application
NASA Astrophysics Data System (ADS)
Wang, J. X.; Li, Y. H.; Zheng, Y. S.; Liu, J. N.
2013-10-01
With the development of computers, network communications, scientific computing, mapping remote sensing and geographic information technologies, Discrete Global Grids (DGGs) and Earth System Spatial Grid（ESSG）have become the integrated spatial data model facing the large-scale and global-scale problems and the complex geo-computation. This paper discusses the property and character of the global spatial data at first. Then it introduces the grid division system based on large arc QTM octree and compares this scheme with degradation octree scheme. At last, it introduces the application of the scheme in land surface, underground and aerial geographic entity modeling. The study suggests that: the grid division system based on large arc QTM octree has the potential to integrate the whole spatial data of different layers of the geospatial. And it will have a broad application prospect in complex large-scale geographic computing.
NASA Astrophysics Data System (ADS)
Moortgat, J.; Firoozabadi, A.
2013-12-01
Most problems of interest in hydrogeology and subsurface energy resources involve complex heterogeneous geological formations. Such domains are most naturally represented in numerical reservoir simulations by unstructured computational grids. Finite element methods are a natural choice to describe fluid flow on unstructured meshes, because the governing equations can be readily discretized for any grid-element geometry. In this work, we consider the challenging problem of fully compositional three-phase flow in 3D unstructured grids, discretized by tetrahedra, prisms, or hexahedra, and compare to simulations on 3D structured grids. We employ a combination of mixed hybrid finite element methods to solve for the pressure and flux fields in a fractional flow formulation, and higher-order discontinuous Galerkin methods for the mass transport equations. These methods are well suited to simulate flow in heterogeneous and fractured reservoirs, because they provide a globally continuous pressure and flux field, while allowing for sharp discontinuities in the phase properties, such as compositions and saturations. The increased accuracy from using higher-order methods improves the modeling of highly non-linear flow, such as gravitational and viscous fingering. We present several numerical examples to study convergence rates and the (lack of) sensitivity to gridding/mesh orientation, and mesh quality. These examples consider gravity depletion, water and gas injection in oil saturated subsurface reservoirs with species exchange between up to three fluid phases. The examples demonstrate the wide applicability of our chosen finite element methods in the study of challenging multiphase flow problems in porous, geometrically complex, subsurface media.
Doulamis, Nikolaos D; Doulamis, Anastasios D; Panagakis, Athanasios; Dolkas, Konstantinos; Varvarigou, Theodora A; Varvarigos, Emmanuel
2004-04-01
Implementation of a commercial application to a grid infrastructure introduces new challenges in managing the quality-of-service (QoS) requirements, most stem from the fact that negotiation on QoS between the user and the service provider should strictly be satisfied. An interesting commercial application with a wide impact on a variety of fields, which can benefit from the computational grid technologies, is three-dimensional (3-D) rendering. In order to implement, however, 3-D rendering to a grid infrastructure, we should develop appropriate scheduling and resource allocation mechanisms so that the negotiated (QoS) requirements are met. Efficient scheduling schemes require modeling and prediction of rendering workload. In this paper workload prediction is addressed based on a combined fuzzy classification and neural network model. Initially, appropriate descriptors are extracted to represent the synthetic world. The descriptors are obtained by parsing RIB formatted files, which provides a general structure for describing computer-generated images. Fuzzy classification is used for organizing rendering descriptor so that a reliable representation is accomplished which increases the prediction accuracy. Neural network performs workload prediction by modeling the nonlinear input-output relationship between rendering descriptors and the respective computational complexity. To increase prediction accuracy, a constructive algorithm is adopted in this paper to train the neural network so that network weights and size are simultaneously estimated. Then, a grid scheduler scheme is proposed to estimate the queuing order that the tasks should be executed and the most appopriate processor assignment so that the demanded QoS are satisfied as much as possible. A fair scheduling policy is considered as the most appropriate. Experimental results on a real grid infrastructure are presented to illustrate the efficiency of the proposed workload prediction--scheduling algorithm
NASA Astrophysics Data System (ADS)
Huang, Qinghua; Li, Zhanhui; Wang, Yanbin
2010-12-01
We presented a parallel 3-D staggered grid pseudospectral time domain (PSTD) method for simulating ground-penetrating radar (GPR) wave propagation. We took the staggered grid method to weaken the global effect in PSTD and developed a modified fast Fourier transform (FFT) spatial derivative operator to eliminate the wraparound effect due to the implicit periodical boundary condition in FFT operator. After the above improvements, we achieved the parallel PSTD computation based on an overlap domain decomposition method without any absorbing condition for each subdomain, which can significantly reduce the required grids in each overlap subdomain comparing with other proposed algorithms. We test our parallel technique for some numerical models and obtained consistent results with the analytical ones and/or those of the nonparallel PSTD method. The above numerical tests showed that our parallel PSTD algorithm is effective in simulating 3-D GPR wave propagation, with merits of saving computation time, as well as more flexibility in dealing with complicated models without losing the accuracy. The application of our parallel PSTD method in applied geophysics and paleoseismology based on GPR data confirmed the efficiency of our algorithm and its potential applications in various subdisciplines of solid earth geophysics. This study would also provide a useful parallel PSTD approach to the simulation of other geophysical problems on distributed memory PC cluster.
On the Quality of Velocity Interpolation Schemes for Marker-In-Cell Methods on 3-D Staggered Grids
NASA Astrophysics Data System (ADS)
Kaus, B.; Pusok, A. E.; Popov, A.
2015-12-01
The marker-in-cell method is generally considered to be a flexible and robust method to model advection of heterogenous non-diffusive properties (i.e. rock type or composition) in geodynamic problems or incompressible Stokes problems. In this method, Lagrangian points carrying compositional information are advected with the ambient velocity field on an immobile, Eulerian grid. However, velocity interpolation from grid points to marker locations is often performed without preserving the zero divergence of the velocity field at the interpolated locations (i.e. non-conservative). Such interpolation schemes can induce non-physical clustering of markers when strong velocity gradients are present (Jenny et al., 2001) and this may, eventually, result in empty grid cells, a serious numerical violation of the marker-in-cell method. Solutions to this problem include: using larger mesh resolutions and/or marker densities, or repeatedly controlling the marker distribution (i.e. inject/delete), but which does not have an established physical background. To remedy this at low computational costs, Jenny et al. (2001) and Meyer and Jenny (2004) proposed a simple, conservative velocity interpolation (CVI) scheme for 2-D staggered grid, while Wang et al. (2015) extended the formulation to 3-D finite element methods. Here, we follow up with these studies and report on the quality of velocity interpolation methods for 2-D and 3-D staggered grids. We adapt the formulations from both Jenny et al. (2001) and Wang et al. (2015) for use on 3-D staggered grids, where the velocity components have different node locations as compared to finite element, where they share the same node location. We test the different interpolation schemes (CVI and non-CVI) in combination with different advection schemes (Euler, RK2 and RK4) and with/out marker control on Stokes problems with strong velocity gradients, which are discretized using a finite difference method. We show that a conservative formulation
Improved Convergence and Robustness of USM3D Solutions on Mixed Element Grids (Invited)
NASA Technical Reports Server (NTRS)
Pandya, Mohagna J.; Diskin, Boris; Thomas, James L.; Frink, Neal T.
2015-01-01
Several improvements to the mixed-element USM3D discretization and defect-correction schemes have been made. A new methodology for nonlinear iterations, called the Hierarchical Adaptive Nonlinear Iteration Scheme (HANIS), has been developed and implemented. It provides two additional hierarchies around a simple and approximate preconditioner of USM3D. The hierarchies are a matrix-free linear solver for the exact linearization of Reynolds-averaged Navier Stokes (RANS) equations and a nonlinear control of the solution update. Two variants of the new methodology are assessed on four benchmark cases, namely, a zero-pressure gradient flat plate, a bump-in-channel configuration, the NACA 0012 airfoil, and a NASA Common Research Model configuration. The new methodology provides a convergence acceleration factor of 1.4 to 13 over the baseline solver technology.
Ababou, R.
1996-12-31
Subsurface flow processes are inherently three-dimensional and heterogeneous over many scales. Taking this into account, for instance assuming random heterogeneity in 3-D space, puts heavy constraints on numerical models. An efficient numerical code has been developed for solving the porous media flow equations, appropriately generalized to account for 3-D, random-like heterogeneity. The code is based on implicit finite differences (or finite volumes), and uses specialized versions of pre-conditioned iterative solvers that take advantage of sparseness. With Diagonally Scaled Conjugate Gradients, in particular, large systems on the order of several million equations, with randomly variable coefficients, have been solved efficiently on Cray-2 and Cray-Y/MP8 machines, in serial mode as well as parallel mode (autotasking). The present work addresses, first, the numerical aspects and computational issues associated with detailed 3-D flow simulations, and secondly, presents a specific application related to the conductivity homogenization problem (identifying a macroscale conduction law, and an equivalent or effective conductivity). Analytical expressions of effective conductivities are compared with empirical values obtained from several large scale simulations conducted for single realizations of random porous media.
Crockett, Robert; Graves, Daniel; Colella, Phillip
2009-10-23
We present a method for solving Poisson and heat equations with discon- tinuous coefficients in two- and three-dimensions. It uses a Cartesian cut-cell/embedded boundary method to represent the interface between materi- als, as described in Johansen& Colella (1998). Matching conditions across the interface are enforced using an approximation to fluxes at the boundary. Overall second order accuracy is achieved, as indicated by an array of tests using non-trivial interface geometries. Both the elliptic and heat solvers are shown to remain stable and efficient for material coefficient contrasts up to 106, thanks in part to the use of geometric multigrid. A test of accuracy when adaptive mesh refinement capabilities are utilized is also performed. An example problem relevant to nuclear reactor core simulation is presented, demonstrating the ability of the method to solve problems with realistic physical parameters.
NASA Astrophysics Data System (ADS)
Simpson, J. J.; Taflove, A.
2005-12-01
We report a finite-difference time-domain (FDTD) computational solution of Maxwell's equations [1] that models the possibility of detecting and characterizing ionospheric disturbances above seismic regions. Specifically, we study anomalies in Schumann resonance spectra in the extremely low frequency (ELF) range below 30 Hz as observed in Japan caused by a hypothetical cylindrical ionospheric disturbance above Taiwan. We consider excitation of the global Earth-ionosphere waveguide by lightning in three major thunderstorm regions of the world: Southeast Asia, South America (Amazon region), and Africa. Furthermore, we investigate varying geometries and characteristics of the ionospheric disturbance above Taiwan. The FDTD technique used in this study enables a direct, full-vector, three-dimensional (3-D) time-domain Maxwell's equations calculation of round-the-world ELF propagation accounting for arbitrary horizontal as well as vertical geometrical and electrical inhomogeneities and anisotropies of the excitation, ionosphere, lithosphere, and oceans. Our entire-Earth model grids the annular lithosphere-atmosphere volume within 100 km of sea level, and contains over 6,500,000 grid-points (63 km laterally between adjacent grid points, 5 km radial resolution). We use our recently developed spherical geodesic gridding technique having a spatial discretization best described as resembling the surface of a soccer ball [2]. The grid is comprised entirely of hexagonal cells except for a small fixed number of pentagonal cells needed for completion. Grid-cell areas and locations are optimized to yield a smoothly varying area difference between adjacent cells, thereby maximizing numerical convergence. We compare our calculated results with measured data prior to the Chi-Chi earthquake in Taiwan as reported by Hayakawa et. al. [3]. Acknowledgement This work was suggested by Dr. Masashi Hayakawa, University of Electro-Communications, Chofugaoka, Chofu Tokyo. References [1] A
NASA Astrophysics Data System (ADS)
Roşca, D.; Morawiec, A.; De Graef, M.
2014-10-01
In computational work, data sets must often be represented on the surface of a sphere or inside a ball, requiring uniform grids. We construct a new volume-preserving projection between a cube and the set of unit quaternions. The projection consists of two steps: an equal-volume mapping from the cube to the unit ball, followed by an inverse generalized Lambert projection to either of the two unit quaternion hemispheres. The new projection provides a one-to-one mapping between a grid in the cube and elements of the special orthogonal group SO(3), i.e., 3D rotations. We provide connections to other rotation representation schemes, including the Rodrigues-Frank vector and the homochoric parameterizations, and illustrate the new mapping through example applications relevant to texture analysis.
Kallinderis, Yannis; Vitsas, Panagiotis A.; Menounou, Penelope
2012-07-15
A low-order flow/acoustics interaction method for the prediction of sound propagation and diffraction in unsteady subsonic compressible flow using adaptive 3-D hybrid grids is investigated. The total field is decomposed into the flow field described by the Euler equations, and the acoustics part described by the Nonlinear Perturbation Equations. The method is shown capable of predicting monopole sound propagation, while employment of acoustics-guided adapted grid refinement improves the accuracy of capturing the acoustic field. Interaction of sound with solid boundaries is also examined in terms of reflection, and diffraction. Sound propagation through an unsteady flow field is examined using static and dynamic flow/acoustics coupling demonstrating the importance of the latter.
A parallel dynamic load balancing algorithm for 3-D adaptive unstructured grids
NASA Technical Reports Server (NTRS)
Vidwans, A.; Kallinderis, Y.; Venkatakrishnan, V.
1993-01-01
Adaptive local grid refinement and coarsening results in unequal distribution of workload among the processors of a parallel system. A novel method for balancing the load in cases of dynamically changing tetrahedral grids is developed. The approach employs local exchange of cells among processors in order to redistribute the load equally. An important part of the load balancing algorithm is the method employed by a processor to determine which cells within its subdomain are to be exchanged. Two such methods are presented and compared. The strategy for load balancing is based on the Divide-and-Conquer approach which leads to an efficient parallel algorithm. This method is implemented on a distributed-memory MIMD system.
Parallel Implementation of an Adaptive Scheme for 3D Unstructured Grids on the SP2
NASA Technical Reports Server (NTRS)
Oliker, Leonid; Biswas, Rupak; Strawn, Roger C.
1996-01-01
Dynamic mesh adaption on unstructured grids is a powerful tool for computing unsteady flows that require local grid modifications to efficiently resolve solution features. For this work, we consider an edge-based adaption scheme that has shown good single-processor performance on the C90. We report on our experience parallelizing this code for the SP2. Results show a 47.OX speedup on 64 processors when 10% of the mesh is randomly refined. Performance deteriorates to 7.7X when the same number of edges are refined in a highly-localized region. This is because almost all mesh adaption is confined to a single processor. However, this problem can be remedied by repartitioning the mesh immediately after targeting edges for refinement but before the actual adaption takes place. With this change, the speedup improves dramatically to 43.6X.
Parallel implementation of an adaptive scheme for 3D unstructured grids on the SP2
NASA Technical Reports Server (NTRS)
Strawn, Roger C.; Oliker, Leonid; Biswas, Rupak
1996-01-01
Dynamic mesh adaption on unstructured grids is a powerful tool for computing unsteady flows that require local grid modifications to efficiently resolve solution features. For this work, we consider an edge-based adaption scheme that has shown good single-processor performance on the C90. We report on our experience parallelizing this code for the SP2. Results show a 47.0X speedup on 64 processors when 10 percent of the mesh is randomly refined. Performance deteriorates to 7.7X when the same number of edges are refined in a highly-localized region. This is because almost all the mesh adaption is confined to a single processor. However, this problem can be remedied by repartitioning the mesh immediately after targeting edges for refinement but before the actual adaption takes place. With this change, the speedup improves dramatically to 43.6X.
Advanced 3D electromagnetic and particle-in-cell modeling on structured/unstructured hybrid grids
Seidel, D.B.; Pasik, M.F.; Kiefer, M.L.; Riley, D.J.; Turner, C.D.
1998-01-01
New techniques have been recently developed that allow unstructured, free meshes to be embedded into standard 3-dimensional, rectilinear, finite-difference time-domain grids. The resulting hybrid-grid modeling capability allows the higher resolution and fidelity of modeling afforded by free meshes to be combined with the simplicity and efficiency of rectilinear techniques. Integration of these new methods into the full-featured, general-purpose QUICKSILVER electromagnetic, Particle-In-Cell (PIC) code provides new modeling capability for a wide variety of electromagnetic and plasma physics problems. To completely exploit the integration of this technology into QUICKSILVER for applications requiring the self-consistent treatment of charged particles, this project has extended existing PIC methods for operation on these hybrid unstructured/rectilinear meshes. Several technical issues had to be addressed in order to accomplish this goal, including the location of particles on the unstructured mesh, adequate conservation of charge, and the proper handling of particles in the transition region between structured and unstructured portions of the hybrid grid.
NASA Astrophysics Data System (ADS)
Magic, Z.; Weiss, A.; Asplund, M.
2015-01-01
Aims: We investigate the relation between 1D atmosphere models that rely on the mixing length theory and models based on full 3D radiative hydrodynamic (RHD) calculations to describe convection in the envelopes of late-type stars. Methods: The adiabatic entropy value of the deep convection zone, sbot, and the entropy jump, Δs, determined from the 3D RHD models, were matched with the mixing length parameter, αMLT, from 1D hydrostatic atmosphere models with identical microphysics (opacities and equation-of-state). We also derived the mass mixing length parameter, αm, and the vertical correlation length of the vertical velocity, C[vz,vz], directly from the 3D hydrodynamical simulations of stellar subsurface convection. Results: The calibrated mixing length parameter for the Sun is α๏MLT (Sbot) = 1.98. . For different stellar parameters, αMLT varies systematically in the range of 1.7 - 2.4. In particular, αMLT decreases towards higher effective temperature, lower surface gravity and higher metallicity. We find equivalent results for α๏MLT (ΔS). In addition, we find a tight correlation between the mixing length parameter and the inverse entropy jump. We derive an analytical expression from the hydrodynamic mean-field equations that motivates the relation to the mass mixing length parameter, αm, and find that it qualitatively shows a similar variation with stellar parameter (between 1.6 and 2.4) with the solar value of α๏m = 1.83.. The vertical correlation length scaled with the pressure scale height yields 1.71 for the Sun, but only displays a small systematic variation with stellar parameters, the correlation length slightly increases with Teff. Conclusions: We derive mixing length parameters for various stellar parameters that can be used to replace a constant value. Within any convective envelope, αm and related quantities vary strongly. Our results will help to replace a constant αMLT. Appendices are available in electronic form at http
NASA Astrophysics Data System (ADS)
Lebedeva-Ivanova, Nina; Gaina, Carmen; Minakov, Alexander; Kashubin, Sergey
2016-04-01
We derived Moho depth and crustal thickness for the High Arctic region by 3D forward and inverse gravity modelling method in the spectral domain (Minakov et al. 2012) using lithosphere thermal gravity anomaly correction (Alvey et al., 2008); a vertical density variation for the sedimentary layer and lateral crustal variation density. Recently updated grids of bathymetry (Jakobsson et al., 2012), gravity anomaly (Gaina et al, 2011) and dynamic topography (Spasojevic & Gurnis, 2012) were used as input data for the algorithm. TeMAr sedimentary thickness grid (Petrov et al., 2013) was modified according to the most recently published seismic data, and was re-gridded and utilized as input data. Other input parameters for the algorithm were calibrated using seismic crustal scale profiles. The results are numerically compared with publically available grids of the Moho depth and crustal thickness for the High Arctic region (CRUST 1 and GEMMA global grids; the deep Arctic Ocean grids by Glebovsky et al., 2013) and seismic crustal scale profiles. The global grids provide coarser resolution of 0.5-1.0 geographic degrees and not focused on the High Arctic region. Our grids better capture all main features of the region and show smaller error in relation to the seismic crustal profiles compare to CRUST 1 and GEMMA grids. Results of 3D gravity modelling by Glebovsky et al. (2013) with separated geostructures approach show also good fit with seismic profiles; however these grids cover the deep part of the Arctic Ocean only. Alvey A, Gaina C, Kusznir NJ, Torsvik TH (2008). Integrated crustal thickness mapping and plate recon-structions for the high Arctic. Earth Planet Sci Lett 274:310-321. Gaina C, Werner SC, Saltus R, Maus S (2011). Circum-Arctic mapping project: new magnetic and gravity anomaly maps of the Arctic. Geol Soc Lond Mem 35, 39-48. Glebovsky V.Yu., Astafurova E.G., Chernykh A.A., Korneva M.A., Kaminsky V.D., Poselov V.A. (2013). Thickness of the Earth's crust in the
Assessment of an Unstructured-Grid Method for Predicting 3-D Turbulent Viscous Flows
NASA Technical Reports Server (NTRS)
Frink, Neal T.
1996-01-01
A method Is presented for solving turbulent flow problems on three-dimensional unstructured grids. Spatial discretization Is accomplished by a cell-centered finite-volume formulation using an accurate lin- ear reconstruction scheme and upwind flux differencing. Time is advanced by an implicit backward- Euler time-stepping scheme. Flow turbulence effects are modeled by the Spalart-Allmaras one-equation model, which is coupled with a wall function to reduce the number of cells in the sublayer region of the boundary layer. A systematic assessment of the method is presented to devise guidelines for more strategic application of the technology to complex problems. The assessment includes the accuracy In predictions of skin-friction coefficient, law-of-the-wall behavior, and surface pressure for a flat-plate turbulent boundary layer, and for the ONERA M6 wing under a high Reynolds number, transonic, separated flow condition.
An Arbitrary Lagrangian-Eulerian Discretization of MHD on 3D Unstructured Grids
Rieben, R N; White, D A; Wallin, B K; Solberg, J M
2006-06-12
We present an arbitrary Lagrangian-Eulerian (ALE) discretization of the equations of resistive magnetohydrodynamics (MHD) on unstructured hexahedral grids. The method is formulated using an operator-split approach with three distinct phases: electromagnetic diffusion, Lagrangian motion, and Eulerian advection. The resistive magnetic dynamo equation is discretized using a compatible mixed finite element method with a 2nd order accurate implicit time differencing scheme which preserves the divergence-free nature of the magnetic field. At each discrete time step, electromagnetic force and heat terms are calculated and coupled to the hydrodynamic equations to compute the Lagrangian motion of the conducting materials. By virtue of the compatible discretization method used, the invariants of Lagrangian MHD motion are preserved in a discrete sense. When the Lagrangian motion of the mesh causes significant distortion, that distortion is corrected with a relaxation of the mesh, followed by a 2nd order monotonic remap of the electromagnetic state variables. The remap is equivalent to Eulerian advection of the magnetic flux density with a fictitious mesh relaxation velocity. The magnetic advection is performed using a novel variant of constrained transport (CT) that is valid for unstructured hexahedral grids with arbitrary mesh velocities. The advection method maintains the divergence free nature of the magnetic field and is second order accurate in regions where the solution is sufficiently smooth. For regions in which the magnetic field is discontinuous (e.g. MHD shocks) the method is limited using a novel variant of algebraic flux correction (AFC) which is local extremum diminishing (LED) and divergence preserving. Finally, we verify each stage of the discretization via a set of numerical experiments.
NASA Astrophysics Data System (ADS)
Moortgat, Joachim; Firoozabadi, Abbas
2016-06-01
Problems of interest in hydrogeology and hydrocarbon resources involve complex heterogeneous geological formations. Such domains are most accurately represented in reservoir simulations by unstructured computational grids. Finite element methods accurately describe flow on unstructured meshes with complex geometries, and their flexible formulation allows implementation on different grid types. In this work, we consider for the first time the challenging problem of fully compositional three-phase flow in 3D unstructured grids, discretized by any combination of tetrahedra, prisms, and hexahedra. We employ a mass conserving mixed hybrid finite element (MHFE) method to solve for the pressure and flux fields. The transport equations are approximated with a higher-order vertex-based discontinuous Galerkin (DG) discretization. We show that this approach outperforms a face-based implementation of the same polynomial order. These methods are well suited for heterogeneous and fractured reservoirs, because they provide globally continuous pressure and flux fields, while allowing for sharp discontinuities in compositions and saturations. The higher-order accuracy improves the modeling of strongly non-linear flow, such as gravitational and viscous fingering. We review the literature on unstructured reservoir simulation models, and present many examples that consider gravity depletion, water flooding, and gas injection in oil saturated reservoirs. We study convergence rates, mesh sensitivity, and demonstrate the wide applicability of our chosen finite element methods for challenging multiphase flow problems in geometrically complex subsurface media.
NASA Astrophysics Data System (ADS)
Li, Y.; Han, B.; Métivier, L.; Brossier, R.
2016-09-01
We investigate an optimal fourth-order staggered-grid finite-difference scheme for 3D frequency-domain viscoelastic wave modeling. An anti-lumped mass strategy is incorporated to minimize the numerical dispersion. The optimal finite-difference coefficients and the mass weighting coefficients are obtained by minimizing the misfit between the normalized phase velocities and the unity. An iterative damped least-squares method, the Levenberg-Marquardt algorithm, is utilized for the optimization. Dispersion analysis shows that the optimal fourth-order scheme presents less grid dispersion and anisotropy than the conventional fourth-order scheme with respect to different Poisson's ratios. Moreover, only 3.7 grid-points per minimum shear wavelength are required to keep the error of the group velocities below 1%. The memory cost is then greatly reduced due to a coarser sampling. A parallel iterative method named CARP-CG is used to solve the large ill-conditioned linear system for the frequency-domain modeling. Validations are conducted with respect to both the analytic viscoacoustic and viscoelastic solutions. Compared with the conventional fourth-order scheme, the optimal scheme generates wavefields having smaller error under the same discretization setups. Profiles of the wavefields are presented to confirm better agreement between the optimal results and the analytic solutions.
A novel 3D embedded gate field effect transistor - Screen-grid FET - Device concept and modelling
NASA Astrophysics Data System (ADS)
Fobelets, K.; Ding, P. W.; Velazquez-Perez, J. E.
2007-05-01
A novel 3D field effect transistor on SOI - screen-grid FET (SGrFET) - is proposed and an analysis of its DC behaviour is presented by means of 2D TCAD analysis. The novel feature of the SGrFET is the design of 3D insulated gate cylinders embedded in the SOI body. This novel gate topology improves efficiency and allows great flexibility in device and gate geometry to optimize DC performance. The floating body effect is avoided and the double gating row configuration controls short channel effects. The traditional intimate relationship between gate length and source-drain distance is removed, resulting in easy control of drain induced barrier lowering, improved output conductance and ideal sub-threshold slope. The separation between the gate fingers in each row is the key factor to optimize the performance, whilst downscaling of the source-drain distance and oxide thickness is not essential from an operational point of view. The device exhibits a huge potential in low power electronics as given by an efficiency of transconductance " gm/ Id" of 39 S/A at VDS = 100 mV over a large gate voltage range and at a source-drain distance of 825 nm. We present the modelling results of the influence of gate cylinder distribution in the channel, channel doping, gate oxide thickness, gate finger distance and source-drain distance on the characteristics of the device.
NASA Astrophysics Data System (ADS)
Hofmann, I.; Boine-Frankenheim, O.
2014-12-01
The numerical noise inherent to particle-in-cell (PIC) simulation of 3d anisotropic high intensity bunched beams in periodic focusing is compared with the analytical model by Struckmeier [Part. Accel. 45, 229 (1994)]. The latter assumes that entropy growth can be related to Markov type stochastic processes due to temperature anisotropy and the artificial "collisions" caused by using macro-particles and calculating the space charge effect. The PIC simulations are carried out with the tracewin code widely used for high intensity beam simulation. The resulting noise can lead to growth of the six-dimensional rms emittance. The logarithm of the latter is shown to qualify as rms-based entropy. We confirm the dependence of this growth on the bunch temperature anisotropy as predicted by Struckmeier. However, we also find a grid and focusing dependent component of noise not predicted by Struckmeier. Although commonalities exist with well-established models for collision effects in PIC-simulation of extended plasmas, a distinctive feature is the presence of a periodic focusing potential, wherein the beam one-component plasma extends only over relatively few Debye lengths. Our findings are applied in particular to noise in high current linac beam simulation, where they help for optimization of the balance between the number of simulation particles and the grid resolution.
NASA Astrophysics Data System (ADS)
Kedia, Kushal S.; Safta, Cosmin; Ray, Jaideep; Najm, Habib N.; Ghoniem, Ahmed F.
2014-09-01
In this paper, we present a second-order numerical method for simulations of reacting flow around heat-conducting immersed solid objects. The method is coupled with a block-structured adaptive mesh refinement (SAMR) framework and a low-Mach number operator-split projection algorithm. A “buffer zone” methodology is introduced to impose the solid-fluid boundary conditions such that the solver uses symmetric derivatives and interpolation stencils throughout the interior of the numerical domain; irrespective of whether it describes fluid or solid cells. Solid cells are tracked using a binary marker function. The no-slip velocity boundary condition at the immersed wall is imposed using the staggered mesh. Near the immersed solid boundary, single-sided buffer zones (inside the solid) are created to resolve the species discontinuities, and dual buffer zones (inside and outside the solid) are created to capture the temperature gradient discontinuities. The development discussed in this paper is limited to a two-dimensional Cartesian grid-conforming solid. We validate the code using benchmark simulations documented in the literature. We also demonstrate the overall second-order convergence of our numerical method. To demonstrate its capability, a reacting flow simulation of a methane/air premixed flame stabilized on a channel-confined bluff-body using a detailed chemical kinetics model is discussed.
NASA Astrophysics Data System (ADS)
Kapahi, A.; Sambasivan, S.; Udaykumar, H. S.
2013-05-01
This work presents a three-dimensional, Eulerian, sharp interface, Cartesian grid technique for simulating the response of elasto-plastic solid materials to hypervelocity impact, shocks and detonations. The mass, momentum and energy equations are solved along with evolution equations for deviatoric stress and plastic strain using a third-order finite difference scheme. Material deformation occurs with accompanying nonlinear stress wave propagation; in the Eulerian framework the boundaries of the deforming material are tracked in a sharp fashion using level-sets and the conditions on the immersed boundaries are applied by suitable modifications of a ghost fluid approach. The dilatational response of the material is modeled using the Mie-Gruneisen equation of state and the Johnson-Cook model is employed to characterize the material response due to rate-dependent plastic deformation. Details are provided on the treatment of the deviatoric stress ghost state so that physically correct boundary conditions can be applied at the material interfaces. An efficient parallel algorithm is used to handle computationally intensive three-dimensional problems. The results demonstrate the ability of the method to simulate high-speed impact, penetration and fragmentation phenomena in three dimensions.
A Cartesian Adaptive Level Set Method for Two-Phase Flows
NASA Technical Reports Server (NTRS)
Ham, F.; Young, Y.-N.
2003-01-01
In the present contribution we develop a level set method based on local anisotropic Cartesian adaptation as described in Ham et al. (2002). Such an approach should allow for the smallest possible Cartesian grid capable of resolving a given flow. The remainder of the paper is organized as follows. In section 2 the level set formulation for free surface calculations is presented and its strengths and weaknesses relative to the other free surface methods reviewed. In section 3 the collocated numerical method is described. In section 4 the method is validated by solving the 2D and 3D drop oscilation problem. In section 5 we present some results from more complex cases including the 3D drop breakup in an impulsively accelerated free stream, and the 3D immiscible Rayleigh-Taylor instability. Conclusions are given in section 6.
Nugroho, Hendro; Widiyantoro, Sri; Nugraha, Andri Dian
2013-09-09
Determination of earthquake hypocenter in Indonesia conducted by the Meteorological, Climatological, and Geophysical Agency (MCGA) has still used a 1-D seismic velocity model. In this research, we have applied a Fast Grid Search (FGM) method and a 3-D velocity model resulting from tomographic imaging to relocate earthquakes in the Sumatran region. The data were taken from the MCGA data catalog from 2009 to 2011 comprising of subduction zone and on land fault earthquakes with magnitude greater than 4 Mw. Our preliminary results show some significant changes in the depths of the relocated earthquakes which are in general deeper than the depths of hypocenters from the MCGA data catalog. The residual times resulting from the relocation process are smaller than those prior to the relocation. Encouraged by these results, we will continue to conduct hypocenter relocation for all events from the MCGA data catalog periodically in order to produce a new data catalog with good quality. We hope that the new data catalog will be useful for further studies.
Verification and validation of the Spalart-Allmaras turbulence model for strand grids
NASA Astrophysics Data System (ADS)
Tong, Oisin
The strand-Cartesian grid approach provides many advantages for complex moving- body flow simulations, including fully-automatic volume grid generation, highly scalable domain connectivity, and high-order accuracy. In this work the Spalart-Allmaras model is implemented, verified, and validated for high Reynolds number turbulent flows in a strand- Cartesian solver. Second-order convergence is achieved using the Method of Manufactured Solutions implying correct implementation of the turbulence model. By using the NASA- Langley online resource, specific flow cases are validated with two independent compressible codes: FUN3D and CFL3D. The strand solver is validated with zero-pressure gradient flat plate and bump-in-channel cases, and shows excellent agreement with FUN3D and CFL3D for various aspects of turbulent flow, including: velocity profiles, turbulent viscosity profile, coefficient of surface pressure, and drag. Methods of handling sharp corners with strand grids through combinations of strand vector smoothing, multiple strands emanating from a single surface node, and telescoping Cartesian refinement into corner regions of the near- body grid are investigated for a NACA 0012 case. For standard viscous high-aspect ratio grids, smoothed strands with telescoping Cartesian refinement provide the most accurate results with the least complexity. Mesh discontinuities associated with use of multiple strands at sharp corners produce more error than with smoothed strands. With both strand approaches -- vector smoothing and multiple strands -- targeted Cartesian refinement is critical to capture features near sharp corners where strand grids alone are too coarse to capture. Other results show agreement with FUN3D and CFL3D. By using strand vector smoothing and telescoping Cartesian refinement, a NACA 4412 trailing edge separation case is validated with comparison against CFL3D and FUN3D. Velocity profiles show reasonable agreement with CFL3D; however implementing
Glimm, J.; Grove, J. W.; Li, X. L.; Li, Y.; Xu, Z.
2002-01-01
Front tracking traces the dynamic evolution of an interface separating differnt materials or fluid components. In this paper, they describe three types of the grid generation methods used in the front tracking method. One is the unstructured surface grid. The second is a structured grid-based reconstruction method. The third is a time-space grid, also grid based, for a conservative tracking algorithm with improved accuracy.
NASA Astrophysics Data System (ADS)
Son, Sang-Kil; Chu, Shih-I.
2008-05-01
We introduce a new computational method on unstructured grids in the three-dimensional (3D) spaces to investigate the electronic structure of polyatomic molecules. The Voronoi-cell finite difference (VFD) method realizes a simple discrete Laplacian operator on unstructured grids based on Voronoi cells and their natural neighbors. The feature of unstructured grids enables us to choose intuitive pictures for an optimal molecular grid system. The new VFD method achieves highly adaptability by the Voronoi-cell diagram and yet simplicity by the finite difference scheme. It has no limitation in local refinement of grids in the vicinity of nuclear positions and provides an explicit expression at each grid without any integration. This method augmented by unstructured molecular grids is suitable for solving the Schr"odinger equation with the realistic 3D Coulomb potentials regardless of symmetry of molecules. For numerical examples, we test accuracies for electronic structures of one-electron polyatomic systems: linear H2^+ and triangular H3^++. We also extend VFD to the density functional theory (DFT) for many-electron polyatomic molecules.
SVD-GFD scheme to simulate complex moving body problems in 3D space
NASA Astrophysics Data System (ADS)
Wang, X. Y.; Yu, P.; Yeo, K. S.; Khoo, B. C.
2010-03-01
The present paper presents a hybrid meshfree-and-Cartesian grid method for simulating moving body incompressible viscous flow problems in 3D space. The method combines the merits of cost-efficient and accurate conventional finite difference approximations on Cartesian grids with the geometric freedom of generalized finite difference (GFD) approximations on meshfree grids. Error minimization in GFD is carried out by singular value decomposition (SVD). The Arbitrary Lagrangian-Eulerian (ALE) form of the Navier-Stokes equations on convecting nodes is integrated by a fractional-step projection method. The present hybrid grid method employs a relatively simple mode of nodal administration. Nevertheless, it has the geometrical flexibility of unstructured mesh-based finite-volume and finite element methods. Boundary conditions are precisely implemented on boundary nodes without interpolation. The present scheme is validated by a moving patch consistency test as well as against published results for 3D moving body problems. Finally, the method is applied on low-Reynolds number flapping wing applications, where large boundary motions are involved. The present study demonstrates the potential of the present hybrid meshfree-and-Cartesian grid scheme for solving complex moving body problems in 3D.
3D DSMC Modeling of the Inner Gas Coma of Comet 67P/Churyumov-Gerasimenko with an Unstructured Grid
NASA Astrophysics Data System (ADS)
Liao, Ying; Marschall, Raphael; Su, Cheng-Chin; Wu, Jong-Shinn; Rubin, Martin; Lai, Ian-Lin; Ip, Wing-Huen; Keller, Horst Uwe; Knollenberg, Joerg; Kuehrt, Ekkehard; Skorov, Yuri; Thomas, Nicolas
2015-04-01
As the development of ESA's Rosetta mission started, it became clear that the physics of the outflow immediately above the surface needed to be understood. Ice sublimating from nucleus surface into vacuum forms the Knudsen layer, which is a non-equilibrium boundary layer with a scale height of about 20 mean free paths. In Rosetta's orbit around Comet 67P/Churyumov-Gerasimenko (C-G), the mean free path will range from meters to kilometers. Direct Simulation Monte Carlo (DSMC) is a very powerful numerical method to study gas flows inside non-equilibrium regions and has been applied to study cometary outflow by many authors over the past decade. The drawback with 3D DSMC is that it is computationally highly intensive and thus time consuming. Our aim here is to determine the gas flow-field in the innermost coma and to place constraints on the surface outgassing properties from analysis of the flow-field. For a preliminary shape model of C-G, we have identified to what extent modification of parameters influences the gas flow and temperature fields and established the reliability of inferences about the initial conditions from in situ and remote sensing measurements. The boundary conditions are implemented with a publicly available nucleus shape model and thermal models based on the surface heat balance equation. Several assumptions and different parameter sets have been investigated by DSMC runs using the PDSC++ (Parallel Direct Simulation Monte Carlo) code on an unstructured tetrahedral grid. In this work, we will present simulations of the flow field and changes resulting from modification of specific variables.
NASA Astrophysics Data System (ADS)
Greenhalgh, Stewart; Zhou, Bing; Maurer, Hansruedi
2010-05-01
We have developed a modified version of the spectral element method (SEM), called the Gaussian Quadrature Grid (GQG) approach, for frequency domain 3D seismic modelling in arbitrary heterogeneous, anisotropic media. The model may incorporate an arbitrary free-surface topography and irregular subsurface interfaces. Unlike the SEM ,it does not require a powerful mesh generator such as the Delauney Triangular or TetGen. Rather, the GQG approach replaces the element mesh with Gaussian quadrature abscissae to directly sample the physical properties of the model parameters and compute the weighted residual or variational integral. This renders the model discretisation simple and easily matched to the model topography, as well as direct control of the model paramterisation for subsequent inversion. In addition, it offers high accuracy in numerical modelling provided that an appropriate density of the Gaussian quadrature abscissae is employed. The second innovation of the GQG is the incorporation of a new implementation of perfectly matched layers to suppress artificial reflections from the domain margins. We employ PML model parameters (specified complex valued density and elastic moduli) rather than explicitly solving the governing wave equation with a complex co-ordinate system as in conventional approaches. Such an implementation is simple, general, effective and easily extendable to any class of anisotropy and other numerical modelling methods. The accuracy of the GQG approach is controlled by the number of Gaussian quadrature points per minimum wavelength, the so-called sampling density. The optimal sampling density should be the one which enables high definition of geological characteristics and high precision of the variational integral evaluation and spatial differentiation. Our experiments show that satisfactory results can be obtained using sampling densities of 5 points per minimum wavelength. Efficiency of the GQG approach mainly depends on the linear
NASA Technical Reports Server (NTRS)
Loh, Ching Y.; Himansu, Ananda; Hultgren, Lennart S.
2003-01-01
A 3-D space-time CE/SE Navier-Stokes solver using an unstructured hexahedral grid is described and applied to a circular jet screech noise computation. The present numerical results for an underexpanded jet, corresponding to a fully expanded Mach number of 1.42, capture the dominant and nonaxisymmetric 'B' screech mode and are generally in good agreement with existing experiments.
NASA Astrophysics Data System (ADS)
Lelievre, Peter; Farquharson, Colin; Hurich, Charles
2010-05-01
methods for use when such a relationship is not available or can not be prescribed. In our joint inversion approach, we discretise the subsurface on an unstructured tetrahedral 3D grid, which, compared to rectilinear discretisation, allows 1) efficient generation of complicated subsurface geometries when such information is known a priori, and 2) can significantly reduce the problem size. The Fast Marching Method is used for the first arrival travel time forward solution and the gravity solution can be calculated using an analytic response for tetrahedra or via a finite element solution to Poisson's equation. When an empirical relationship between physical properties can be developed, our inversion approach can enforce that relationship to some degree commensurate with our confidence in the relationship. In the absence of an empirical relationship, we employ a correlation measure to encourage the properties to maintain a general linear or log-linear relationship. Again, the strength of this correlation constraint can be adjusted based on our confidence in the underlying assumption. In a further extension, we apply an additional fuzzy c-mean measure to encourage the recovered physical property distributions to cluster following the characteristics of the joint physical property distributions determined a priori. If such a priori information is not available, suitable cluster locations can be estimated through an iterative strategy. Rather than moving to a computationally intensive statistical sampling methodology, we work in a deterministic framework, where well-behaved functions are minimized via a descent search. After some instructional mathematical preliminaries, we present our methods on synthetic and real data scenarios from the Voisey's Bay massive sulphide deposit in Labrador, Canada.
NASA Astrophysics Data System (ADS)
Margenov, Svetozar; Kosturski, Nikola
2009-04-01
In this study, the topics of grid generation and FEM applications are studied together following their natural synergy. We consider the following three tetrahedral grid generators: NETGEN, TetGen, and Gmsh. After that, the performance of the MIC(0) preconditioned conjugate gradient (PCG) solver is analyzed for both conforming and non-conforming linear FEM problems. If positive off-diagonal entries appear in the corresponding matrix, a diagonal compensation is applied to get an auxiliary M-matrix allowing a stable MIC(0) factorization. The presented numerical experiments for elliptic and parabolic problems well illustrate the similar PCG convergence rate of the MIC(0) preconditioner for both, structured and unstructured grids.
NASA Astrophysics Data System (ADS)
Tackley, P. J.
2013-12-01
StagYY is a well-established code for modelling mantle convection in 3D spherical geometry (Tackley, PEPI 2008), incorporating several physical complexities such as compressibility, phase transitions, compositional variations, strongly temperature-dependent, non-linear rheology, tracers to track composition, continents, partial melting and melt migration. It uses a finite volume discretization (primitive variables on a staggered grid) on the yin-yang spherical grid (minimum overlap version). Geometric multigrid is used for simultaneous solution of the Stokes and mass conservation equations. Here, parallelization using MPI is discussed, and performance and scaling of the current StagYY version on up to 4096 cores on grids of up to 768x2304x512x2 cells (1.8 billion, corresponding to 7.2 billion unknowns) is demonstrated. Complexities related to scaling further to 100,000s to millions of cores are discussed together with possible solutions and performance projections.
Fully-coupled analysis of jet mixing problems. Three-dimensional PNS model, SCIP3D
NASA Technical Reports Server (NTRS)
Wolf, D. E.; Sinha, N.; Dash, S. M.
1988-01-01
Numerical procedures formulated for the analysis of 3D jet mixing problems, as incorporated in the computer model, SCIP3D, are described. The overall methodology closely parallels that developed in the earlier 2D axisymmetric jet mixing model, SCIPVIS. SCIP3D integrates the 3D parabolized Navier-Stokes (PNS) jet mixing equations, cast in mapped cartesian or cylindrical coordinates, employing the explicit MacCormack Algorithm. A pressure split variant of this algorithm is employed in subsonic regions with a sublayer approximation utilized for treating the streamwise pressure component. SCIP3D contains both the ks and kW turbulence models, and employs a two component mixture approach to treat jet exhausts of arbitrary composition. Specialized grid procedures are used to adjust the grid growth in accordance with the growth of the jet, including a hybrid cartesian/cylindrical grid procedure for rectangular jets which moves the hybrid coordinate origin towards the flow origin as the jet transitions from a rectangular to circular shape. Numerous calculations are presented for rectangular mixing problems, as well as for a variety of basic unit problems exhibiting overall capabilities of SCIP3D.
On Bi-Grid Local Mode Analysis of Solution Techniques for 3-D Euler and Navier-Stokes Equations
NASA Technical Reports Server (NTRS)
Ibraheem, S. O.; Demuren, A. O.
1994-01-01
A procedure is presented for utilizing a bi-grid stability analysis as a practical tool for predicting multigrid performance in a range of numerical methods for solving Euler and Navier-Stokes equations. Model problems based on the convection, diffusion and Burger's equation are used to illustrate the superiority of the bi-grid analysis as a predictive tool for multigrid performance in comparison to the smoothing factor derived from conventional von Neumann analysis. For the Euler equations, bi-grid analysis is presented for three upwind difference based factorizations, namely Spatial, Eigenvalue and Combination splits, and two central difference based factorizations, namely LU and ADI methods. In the former, both the Steger-Warming and van Leer flux-vector splitting methods are considered. For the Navier-Stokes equations, only the Beam-Warming (ADI) central difference scheme is considered. In each case, estimates of multigrid convergence rates from the bi-grid analysis are compared to smoothing factors obtained from single-grid stability analysis. Effects of grid aspect ratio and flow skewness are examined. Both predictions are compared with practical multigrid convergence rates for 2-D Euler and Navier-Stokes solutions based on the Beam-Warming central scheme.
NASA Astrophysics Data System (ADS)
Dalichaouch, Thamine; Yu, Peicheng; Davidson, Asher; Mori, Warren; Vieira, Jorge; Fonseca, Ricardo
2015-11-01
Laser wakefield acceleration (LWFA) has attracted a lot of interest as a possible compact particle accelerator. However, 3D simulations of plasma-based accelerators are computationally intensive, sometimes taking millions of core hours on today's computers. A quasi-3D particle-In-cell (PIC) approach has been developed to take advantage of azimuthal symmetry in LWFA (and PWFA) simulations by using a particle-in-cell description in r-z and a Fourier description in φ. Quasi-3D simulations of LWFA are computationally more efficient and faster than Full-3D simulations because only first few azimuthal harmonics are needed to capture the physics of the problem. We have developed a cylindrical mode decomposition diagnostic for 3D Cartesian geometry simulations to analyze the agreement between full-3D and quasi-3D PIC simulations of laser and beam-plasma interactions. The diagnostic interpolates field data from Full-3D PIC simulations onto an irregular cylindrical grid (r , φ , z). A Fourier decomposition is then performed on the interpolated 3D simulation data along the azimuthal direction. This diagnostic has the added advantage of separating out the wakefields from the laser field. Preliminary results for this diagnostic of LWFA and PWFA simulations with symmetric and nearly symmetric spot sizes as well as of laser-plasma interactions using lasers with orbital angular momentum (higher order Laguerre-Gaussian modes) will be presented.
NASA Astrophysics Data System (ADS)
Laine, Eevaliisa
2015-04-01
The Outokumpu mining district - a metallogenic province about 100 km long x 60 km wide - hosts a Palaeoproterozoic sulfide deposit characterized by an unusual lithological association. It is located in the North Karelia Schist Belt , which was thrust on the late Archaean gneissic-granitoid basement of the Karelian craton during the early stages of the Svecofennian Orogeny between 1.92 and 1.87 Ga (Koistinen 1981). Two major tectono-stratigraphic units can be distinguished, a lower, parautochthonous 'Lower Kaleva' unit and an upper, allochthonous 'upper Kaleva' unit or 'Outokumpu allochthon'. The latter consists of tightly-folded deep marine turbiditic mica schists and metagraywackes containing intercalations of black schist, and the Outo¬kumpu assemblage, which comprises ca. 1950 Ma old, serpentinized peridotites surrounded by carbonate-calc-silicate ('skarn')-quartz rocks. The ore body is enclosed in the Outokumpu assemblage, which is thought to be part of a disrupted and incomplete ophiolite complex (Vuollo & Piirainen 1989) that can be traced to the Kainuu schist belt further north where the well-preserved Jormua ophiolite is ex¬posed (Kontinen 1987, Peltonen & Kontinen 2004). Outokumpu can be divided into blocks divided by faults and shear zones (Saalmann and Laine, 2014). The aim of this study was to make a 3D lithological model of a small part of the Outokumpu association rocks in the Vuonos area honoring the 3D fault model built by Saalmann and Laine (2014). The Vuonos study area is also a part of the Outokumpu mining camp area (Aatos et al. 2013, 2014). Fault and shear structures was used in geostatistical gridding and simulation of the lithologies. Several possible realizations of the structural grids, conforming the main lithological trends were built. Accordingly, it was possible to build a 3D structural grid containing information of the distribution of the possible lithologies and an estimation the associated uncertainties. References: Aatos, S
NASA Technical Reports Server (NTRS)
Stremel, Paul M.
1995-01-01
A method has been developed to accurately compute the viscous flow in three-dimensional (3-D) enclosures. This method is the 3-D extension of a two-dimensional (2-D) method developed for the calculation of flow over airfoils. The 2-D method has been tested extensively and has been shown to accurately reproduce experimental results. As in the 2-D method, the 3-D method provides for the non-iterative solution of the incompressible Navier-Stokes equations by means of a fully coupled implicit technique. The solution is calculated on a body fitted computational mesh incorporating a staggered grid methodology. In the staggered grid method, the three components of vorticity are defined at the centers of the computational cell sides, while the velocity components are defined as normal vectors at the centers of the computational cell faces. The staggered grid orientation provides for the accurate definition of the vorticity components at the vorticity locations, the divergence of vorticity at the mesh cell nodes and the conservation of mass at the mesh cell centers. The solution is obtained by utilizing a fractional step solution technique in the three coordinate directions. The boundary conditions for the vorticity and velocity are calculated implicitly as part of the solution. The method provides for the non-iterative solution of the flow field and satisfies the conservation of mass and divergence of vorticity to machine zero at each time step. To test the method, the calculation of simple driven cavity flows have been computed. The driven cavity flow is defined as the flow in an enclosure driven by a moving upper plate at the top of the enclosure. To demonstrate the ability of the method to predict the flow in arbitrary cavities, results will he shown for both cubic and curved cavities.
Modeling a three-dimensional river plume over continental shelf using a 3D unstructured grid model
Cheng, R.T.; Casulli, V.
2004-01-01
River derived fresh water discharging into an adjacent continental shelf forms a trapped river plume that propagates in a narrow region along the coast. These river plumes are real and they have been observed in the field. Many previous investigations have reported some aspects of the river plume properties, which are sensitive to stratification, Coriolis acceleration, winds (upwelling or downwelling), coastal currents, and river discharge. Numerical modeling of the dynamics of river plumes is very challenging, because the complete problem involves a wide range of vertical and horizontal scales. Proper simulations of river plume dynamics cannot be achieved without a realistic representation of the flow and salinity structure near the river mouth that controls the initial formation and propagation of the plume in the coastal ocean. In this study, an unstructured grid model was used for simulations of river plume dynamics allowing fine grid resolution in the river and in regions near the coast with a coarse grid in the far field of the river plume in the coastal ocean, in the vertical, fine fixed levels were used near the free surface, and coarse vertical levels were used over the continental shelf. The simulations have demonstrated the uniquely important role played by Coriolis acceleration. Without Coriolis acceleration, no trapped river plume can be formed no matter how favorable the ambient conditions might be. The simulation results show properties of the river plume and the characteristics of flow and salinity within the estuary; they are completely consistent with the physics of estuaries and coastal oceans.
Bischof, C.H.; Mauer, A.; Jones, W.T.
1995-12-31
Automatic differentiation (AD) is a methodology for developing reliable sensitivity-enhanced versions of arbitrary computer programs with little human effort. It can vastly accelerate the use of advanced simulation codes in multidisciplinary design optimization, since the time for generating and verifying derivative codes is greatly reduced. In this paper, we report on the application of the recently developed ADIC automatic differentiation tool for ANSI C programs to the CSCMDO multiblock three-dimensional volume grid generator. The ADIC-generated code can easily be interfaced with Fortran derivative codes generated with the ADIFOR AD tool FORTRAN 77 programs, thus providing efficient sensitivity-enhancement techniques for multilanguage, multidiscipline problems.
A survey of grid-free methods for the simulation of 3-D incompressible flows in bounded domains
Gharakhani, A.
1997-09-01
The state-of-the-art in Lagrangian methods for the grid-free simulation of three-dimensional, incompressible, high Reynolds number, internal and/or external flows is surveyed. Specifically, vortex and velicity (or impulse) element methods are introduced. The relative merits of various available techniques and the outstanding challenges in simulating the processes of convection and diffusion, as well as in satisfying the wall boundary conditions are discussed individually. Issues regarding the stretch and solenoidality of vorticity are also discussed. A potentially successful algorithm for simulating the flow around a parachute is proposed as well.
NASA Astrophysics Data System (ADS)
Tang, H. S.; Qu, K.; Wu, X. G.
2014-09-01
It is now becoming important to develop our capabilities to simulate coastal ocean flows involved with distinct physical phenomena occurring at a vast range of spatial and temporal scales. This paper presents a hybrid modeling system for such simulation. The system consists of a fully three dimensional (3D) fluid dynamics model and a geophysical fluid dynamics model, which couple with each other in two-way and march in time simultaneously. Particularly, in the hybrid system, the solver for incompressible flow on overset meshes (SIFOM) resolves fully 3D small-scale local flow phenomena, while the unstructured grid finite volume coastal ocean model (FVCOM) captures large-scale background flows. The integration of the two models are realized via domain decomposition implemented with an overset grid method. Numerical experiments on performance of the system in resolving flow patterns and solution convergence rate show that the SIFOM-FVCOM system works as intended, and its solutions compare reasonably with data obtained with measurements and other computational approaches. Its unparalleled capabilities to predict multiphysics and multiscale phenomena with high-fidelity are demonstrated by three typical applications that are beyond the reach of other currently existing models. It is anticipated that the SIFOM-FVCOM system will serve as a new platform to study many emerging coastal ocean problems.
NASA Astrophysics Data System (ADS)
Bonduá, S.; Berry, P.; Bortolotti, V.; Cormio, C.
2012-09-01
Within the MAC-GEO research project, funded by Regione Toscana and addressed to the exploitation of high enthalpy geothermal systems, the authors worked on the utilization and customization of the open source numerical simulator TOUGH2, as implemented in the code dedicated to model calibration iTOUGH2. TOUGH2 is one of the most used numerical simulation software for non-isothermal flow of multicomponent, multiphase fluids in one, two and three-dimensional porous and fractured media. Lacking an official Graphical User Interface tool for post-processing operations, several commercial and academic software have been developed to manage and display TOUGH2 input and output data files. Almost all of these tools seem to have limits to visualizing parameter values of the numerical model, work only with a predefined binary version of TOUGH2, and only a few of them can manage locally refined unstructured grids (i.e. Voronoi grids). To overcome these limitations, the authors have developed and tested a dedicated software application (called TOUGH2Viewer) for reading and managing TOUGH2 output files, written in Java and able to provide an interactive 3D view of the numerical model. Several functionalities have been implemented for block query and searching, contour mapping and 3D surface mapping of TOUGH2 primary variables (i.e. pressure, temperature, etc.). TOUGH2Viewer is also able to display 2D and 3D views of mass and heat flow between blocks, for each time step in which the simulation proceeds. The application described in this paper is under development to improve its functionalities; nevertheless the current software release is a valid support tool for post-processing that significantly improves the possibility to inspect the simulated data coming from TOUGH2.
Higher Order Lagrange Finite Elements In M3D
J. Chen; H.R. Strauss; S.C. Jardin; W. Park; L.E. Sugiyama; G. Fu; J. Breslau
2004-12-17
The M3D code has been using linear finite elements to represent multilevel MHD on 2-D poloidal planes. Triangular higher order elements, up to third order, are constructed here in order to provide M3D the capability to solve highly anisotropic transport problems. It is found that higher order elements are essential to resolve the thin transition layer characteristic of the anisotropic transport equation, particularly when the strong anisotropic direction is not aligned with one of the Cartesian coordinates. The transition layer is measured by the profile width, which is zero for infinite anisotropy. It is shown that only higher order schemes have the ability to make this layer converge towards zero when the anisotropy gets stronger and stronger. Two cases are considered. One has the strong transport direction partially aligned with one of the element edges, the other doesn't have any alignment. Both cases have the strong transport direction misaligned with the grid line by some angles.
A Cartesian scheme for compressible multimaterial models in 3D
NASA Astrophysics Data System (ADS)
de Brauer, Alexia; Iollo, Angelo; Milcent, Thomas
2016-05-01
We model the three-dimensional interaction of compressible materials separated by sharp interfaces. We simulate fluid and hyperelastic solid flows in a fully Eulerian framework. The scheme is the same for all materials and can handle large deformations and frictionless contacts. Necessary conditions for hyperbolicity of the hyperelastic neohookean model in three dimensions are proved thanks to an explicit computation of the characteristic speeds. We present stiff multimaterial interactions including air-helium and water-air shock interactions, projectile-shield impacts in air and rebounds.
The adaptive, cut-cell Cartesian approach (warts and all)
NASA Technical Reports Server (NTRS)
Powell, Kenneth G.
1995-01-01
Solution-adaptive methods based on cutting bodies out of Cartesian grids are gaining popularity now that the ways of circumventing the accuracy problems associated with small cut cells have been developed. Researchers are applying Cartesian-based schemes to a broad class of problems now, and, although there is still development work to be done, it is becoming clearer which problems are best suited to the approach (and which are not). The purpose of this paper is to give a candid assessment, based on applying Cartesian schemes to a variety of problems, of the strengths and weaknesses of the approach as it is currently implemented.
NASA Astrophysics Data System (ADS)
Choi, Yu-Jin; Hyde, Peter; Fernando, H. J. S.
High (episodic) particulate matter (PM) events over the sister cities of Douglas (AZ) and Agua Prieta (Sonora), located in the US-Mexico border, were simulated using the 3D Eulerian air quality model, MODELS-3/CMAQ. The best available input information was used for the simulations, with pollution inventory specified on a fine grid. In spite of inherent uncertainties associated with the emission inventory as well as the chemistry and meteorology of the air quality simulation tool, model evaluations showed acceptable PM predictions, while demonstrating the need for including the interaction between meteorology and emissions in an interactive mode in the model, a capability currently unavailable in MODELS-3/CMAQ when dealing with PM. Sensitivity studies on boundary influence indicate an insignificant regional (advection) contribution of PM to the study area. The contribution of secondary particles to the occurrence of high PM events was trivial. High PM episodes in the study area, therefore, are purely local events that largely depend on local meteorological conditions. The major PM emission sources were identified as vehicular activities on unpaved/paved roads and wind-blown dust. The results will be of immediate utility in devising PM mitigation strategies for the study area, which is one of the US EPA-designated non-attainment areas with respect to PM.
Blodwell, J.F.
1987-10-01
It is argued that the point structure of space and time must be constructed from the primitive extensional character of space and time. A procedure for doing this is laid down and applied to one-dimensional and two-dimensional systems of abstract extensions. Topological and metrical properties of the constructed point systems, which differ nontrivially from the usual R and R/sup 2/ models, are examined. Briefly, constructed points are associated with directions and the Cartesian point is split. In one-dimension each point splits into a point pair compatible with the linear ordering. An application to one-dimensional particle motion is given, with the result that natural topological assumptions force the number of left point, right point transitions to remain locally finite in a continuous motion. In general, Cartesian points are seen to correspond to certain filters on a suitable Boolean algebra. Constructed points correspond to ultrafilters. Thus, point construction gives a natural refinement of the Cartesian systems.
NASA Technical Reports Server (NTRS)
Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.
1990-01-01
PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.
Electronic Absolute Cartesian Autocollimator
NASA Technical Reports Server (NTRS)
Leviton, Douglas B.
2006-01-01
An electronic absolute Cartesian autocollimator performs the same basic optical function as does a conventional all-optical or a conventional electronic autocollimator but differs in the nature of its optical target and the manner in which the position of the image of the target is measured. The term absolute in the name of this apparatus reflects the nature of the position measurement, which, unlike in a conventional electronic autocollimator, is based absolutely on the position of the image rather than on an assumed proportionality between the position and the levels of processed analog electronic signals. The term Cartesian in the name of this apparatus reflects the nature of its optical target. Figure 1 depicts the electronic functional blocks of an electronic absolute Cartesian autocollimator along with its basic optical layout, which is the same as that of a conventional autocollimator. Referring first to the optical layout and functions only, this or any autocollimator is used to measure the compound angular deviation of a flat datum mirror with respect to the optical axis of the autocollimator itself. The optical components include an illuminated target, a beam splitter, an objective or collimating lens, and a viewer or detector (described in more detail below) at a viewing plane. The target and the viewing planes are focal planes of the lens. Target light reflected by the datum mirror is imaged on the viewing plane at unit magnification by the collimating lens. If the normal to the datum mirror is parallel to the optical axis of the autocollimator, then the target image is centered on the viewing plane. Any angular deviation of the normal from the optical axis manifests itself as a lateral displacement of the target image from the center. The magnitude of the displacement is proportional to the focal length and to the magnitude (assumed to be small) of the angular deviation. The direction of the displacement is perpendicular to the axis about which the
Conversion of Cartesian coordinates from and to Generalized Balanced Ternary addresses
van Roessel, Jan W.
1988-01-01
Hexagonal grids have several advantages over square grids, such as a greater angular resolution and unambiguous connectivity. The Generalized Balanced Ternary (GBT) system is a spatial addressing method for hexagonal grids in which the hexagons are arranged in hierarchical aggregates, and which accommodates vector operations in GBT space. Efficient algorithms for converting Cartesian coordinates from and to GBT addresses are based on the dual representation of the hexagonal tessellation. The GBT-to-Cartesian algorithm is an order of magnitude faster than the Cartesian-to-GBT algorithm, the latter requiring interpolation and GBT addition for each digit of the generated GBT address.
PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITH TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITHOUT TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
NASA Astrophysics Data System (ADS)
Cherry, Matthew R.; Aldrin, John C.; Boehnlein, Thomas; Blackshire, James L.
2013-01-01
In this work, a combined grid/FEM method that is capable of using parallelepiped or tetragonal mesh elements, as well as a combination of the two, is investigated. A formulation was developed that leverages the architecture of GPUs with irregular grids to efficiently address complex structures and heterogeneous materials. Benchmark studies are presented comparing the computational time, memory requirements, and simulation accuracy for GPU and CPU solvers with several challenge NDE problems.
An assessment of unstructured grid technology for timely CFD analysis
NASA Technical Reports Server (NTRS)
Kinard, Tom A.; Schabowski, Deanne M.
1995-01-01
An assessment of two unstructured methods is presented in this paper. A tetrahedral unstructured method USM3D, developed at NASA Langley Research Center is compared to a Cartesian unstructured method, SPLITFLOW, developed at Lockheed Fort Worth Company. USM3D is an upwind finite volume solver that accepts grids generated primarily from the Vgrid grid generator. SPLITFLOW combines an unstructured grid generator with an implicit flow solver in one package. Both methods are exercised on three test cases, a wing, and a wing body, and a fully expanded nozzle. The results for the first two runs are included here and compared to the structured grid method TEAM and to available test data. On each test case, the set up procedure are described, including any difficulties that were encountered. Detailed descriptions of the solvers are not included in this paper.
Wave-CAIPI for Highly Accelerated 3D Imaging
Bilgic, Berkin; Gagoski, Borjan A.; Cauley, Stephen F.; Fan, Audrey P.; Polimeni, Jonathan R.; Grant, P. Ellen; Wald, Lawrence L.; Setsompop, Kawin
2014-01-01
Purpose To introduce the Wave-CAIPI (Controlled Aliasing in Parallel Imaging) acquisition and reconstruction technique for highly accelerated 3D imaging with negligible g-factor and artifact penalties. Methods The Wave-CAIPI 3D acquisition involves playing sinusoidal gy and gz gradients during the readout of each kx encoding line, while modifying the 3D phase encoding strategy to incur inter-slice shifts as in 2D-CAIPI acquisitions. The resulting acquisition spreads the aliasing evenly in all spatial directions, thereby taking full advantage of 3D coil sensitivity distribution. By expressing the voxel spreading effect as a convolution in image space, an efficient reconstruction scheme that does not require data gridding is proposed. Rapid acquisition and high quality image reconstruction with Wave-CAIPI is demonstrated for high-resolution magnitude and phase imaging and Quantitative Susceptibility Mapping (QSM). Results Wave-CAIPI enables full-brain gradient echo (GRE) acquisition at 1 mm isotropic voxel size and R=3×3 acceleration with maximum g-factors of 1.08 at 3T, and 1.05 at 7T. Relative to the other advanced Cartesian encoding strategies 2D-CAIPI and Bunched Phase Encoding, Wave-CAIPI yields up to 2-fold reduction in maximum g-factor for 9-fold acceleration at both field strengths. Conclusion Wave-CAIPI allows highly accelerated 3D acquisitions with low artifact and negligible g-factor penalties, and may facilitate clinical application of high-resolution volumetric imaging. PMID:24986223
A HYBRID SOLAR WIND MODEL OF THE CESE+HLL METHOD WITH A YIN-YANG OVERSET GRID AND AN AMR GRID
Feng Xueshang; Zhang Shaohua; Xiang Changqing; Yang Liping; Jiang Chaowei; Wu, S. T.
2011-06-10
A hybrid three-dimensional (3D) MHD model for solar wind study is proposed in the present paper with combined grid systems and solvers. The computational domain from the Sun to Earth space is decomposed into the near-Sun and off-Sun domains, which are respectively constructed with a Yin-Yang overset grid system and a Cartesian adaptive mesh refinement (AMR) grid system and coupled with a domain connection interface in the overlapping region between the near-Sun and off-Sun domains. The space-time conservation element and solution element method is used in the near-Sun domain, while the Harten-Lax-Leer method is employed in the off-Sun domain. The Yin-Yang overset grid can avoid well-known singularity and polar grid convergence problems and its body-fitting property helps achieve high-quality resolution near the solar surface. The block structured AMR Cartesian grid can automatically capture far-field plasma flow features, such as heliospheric current sheets and shock waves, and at the same time, it can save significant computational resources compared to the uniformly structured Cartesian grid. A numerical study of the solar wind structure for Carrington rotation 2069 shows that the newly developed hybrid MHD solar wind model successfully produces many realistic features of the background solar wind, in both the solar corona and interplanetary space, by comparisons with multiple solar and interplanetary observations.
Wang, Xiao-Gang; Carrington, Tucker
2005-10-15
In this paper we report two improvements on the approach we have used to compute rovibrational levels of methane and apply the new ideas to calculate rovibrational levels of two methane isotopomers CH3D and CHD3. Both improvements make the bend calculation better. The first improvement is a G6-invariant (or C3upsilon-invariant) grid which is designed such that each point on the grid is mapped to another point on the grid by any of the G6 operations. The second improvement is the use of fast Fourier transform (FFT) to compute the bend potential matrix-vector products. The FFT matrix-vector product is about three and ten times faster than the previous sequential summation method for the J=0 and J>0 cases, respectively. The calculated J=1 rovibrational levels of CH3D and CHD3 on the Schwenke and Partridge [Spectrochim. Acta, Part A 57, 887 (2001)] ab initio potential are in good agreement (within 6 cm(-1) for the levels up to 3000 cm(-1)) with the experimental data. The agreement is even better (within 0.1 cm(-1) for the levels up to 6000 cm(-1)) if the associated J=0 energies are subtracted. PMID:16252944
Errors of Remapping of Radar Estimates onto Cartesian Coordinates
NASA Astrophysics Data System (ADS)
Sharif, H. O.; Ogden, F. L.
2014-12-01
Recent upgrades to operational radar rainfall products in terms of quality and resolution call for re-examination of the factors that contribute to the uncertainty of radar rainfall estimation. Remapping or gridding of radar polar observations onto Cartesian coordinates is implemented using various methods, and is often applied when radar estimates are compared against rain gauge observations, in hydrologic applications, or for merging data from different radars. However, assuming perfect radar observations, many of the widely used remapping methodologies do not conserve mass for the rainfall rate field. Research has suggested that optimal remapping should select all polar bins falling within or intersecting a Cartesian grid and assign them weights based on the proportion of each individual bin's area falling within the grid. However, to reduce computational demand practitioners use a variety of approximate remapping approaches. The most popular approximate approaches used are those based on extracting information from radar bins whose centers fall within a certain distance from the center of the Cartesian grid. This paper introduces a mass-conserving method for remapping, which we call "precise remapping", and evaluates it by comparing against two other commonly used remapping methods based on areal weighting and distance. Results show that the choice of the remapping method can lead to large errors in grid-averaged rainfall accumulations.
NASA Astrophysics Data System (ADS)
de Basabe, Jonás D.
2011-08-01
Zhou & Greenhalgh have recently presented an application of the Gaussian quadrature grid to seismic modelling in which the authors propose a meshing scheme that partitions the domain independently of the discontinuities in the media parameters. This comment aims to clarify the implications that this strategy has on the accuracy.
NASA Astrophysics Data System (ADS)
Gainullin, I. K.; Sonkin, M. A.
2015-03-01
A parallelized three-dimensional (3D) time-dependent Schrodinger equation (TDSE) solver for one-electron systems is presented in this paper. The TDSE Solver is based on the finite-difference method (FDM) in Cartesian coordinates and uses a simple and explicit leap-frog numerical scheme. The simplicity of the numerical method provides very efficient parallelization and high performance of calculations using Graphics Processing Units (GPUs). For example, calculation of 106 time-steps on the 1000ṡ1000ṡ1000 numerical grid (109 points) takes only 16 hours on 16 Tesla M2090 GPUs. The TDSE Solver demonstrates scalability (parallel efficiency) close to 100% with some limitations on the problem size. The TDSE Solver is validated by calculation of energy eigenstates of the hydrogen atom (13.55 eV) and affinity level of H- ion (0.75 eV). The comparison with other TDSE solvers shows that a GPU-based TDSE Solver is 3 times faster for the problems of the same size and with the same cost of computational resources. The usage of a non-regular Cartesian grid or problem-specific non-Cartesian coordinates increases this benefit up to 10 times. The TDSE Solver was applied to the calculation of the resonant charge transfer (RCT) in nanosystems, including several related physical problems, such as electron capture during H+-H0 collision and electron tunneling between H- ion and thin metallic island film.
A Cartesian embedded boundary method for hyperbolic conservation laws
Sjogreen, B; Petersson, N A
2006-12-04
The authors develop an embedded boundary finite difference technique for solving the compressible two- or three-dimensional Euler equations in complex geometries on a Cartesian grid. The method is second order accurate with an explicit time step determined by the grid size away from the boundary. Slope limiters are used on the embedded boundary to avoid non-physical oscillations near shock waves. They show computed examples of supersonic flow past a cylinder and compare with results computed on a body fitted grid. Furthermore, they discuss the implementation of the method for thin geometries, and show computed examples of transonic flow past an airfoil.
Towards Hybrid Overset Grid Simulations of the Launch Environment
NASA Astrophysics Data System (ADS)
Moini-Yekta, Shayan
A hybrid overset grid approach has been developed for the design and analysis of launch vehicles and facilities in the launch environment. The motivation for the hybrid grid methodology is to reduce the turn-around time of computational fluid dynamic simulations and improve the ability to handle complex geometry and flow physics. The LAVA (Launch Ascent and Vehicle Aerodynamics) hybrid overset grid scheme consists of two components: an off-body immersed-boundary Cartesian solver with block-structured adaptive mesh refinement and a near-body unstructured body-fitted solver. Two-way coupling is achieved through overset connectivity between the off-body and near-body grids. This work highlights verification using code-to-code comparisons and validation using experimental data for the individual and hybrid solver. The hybrid overset grid methodology is applied to representative unsteady 2D trench and 3D generic rocket test cases.
FARGO3D: Hydrodynamics/magnetohydrodynamics code
NASA Astrophysics Data System (ADS)
Benítez Llambay, Pablo; Masset, Frédéric
2015-09-01
A successor of FARGO (ascl:1102.017), FARGO3D is a versatile HD/MHD code that runs on clusters of CPUs or GPUs, with special emphasis on protoplanetary disks. FARGO3D offers Cartesian, cylindrical or spherical geometry; 1-, 2- or 3-dimensional calculations; and orbital advection (aka FARGO) for HD and MHD calculations. As in FARGO, a simple Runge-Kutta N-body solver may be used to describe the orbital evolution of embedded point-like objects. There is no need to know CUDA; users can develop new functions in C and have them translated to CUDA automatically to run on GPUs.
Glacial isostatic adjustment on 3-D Earth models: a finite-volume formulation
NASA Astrophysics Data System (ADS)
Latychev, Konstantin; Mitrovica, Jerry X.; Tromp, Jeroen; Tamisiea, Mark E.; Komatitsch, Dimitri; Christara, Christina C.
2005-05-01
We describe and present results from a finite-volume (FV) parallel computer code for forward modelling the Maxwell viscoelastic response of a 3-D, self-gravitating, elastically compressible Earth to an arbitrary surface load. We implement a conservative, control volume discretization of the governing equations using a tetrahedral grid in Cartesian geometry and a low-order, linear interpolation. The basic starting grid honours all major radial discontinuities in the Preliminary Reference Earth Model (PREM), and the models are permitted arbitrary spatial variations in viscosity and elastic parameters. These variations may be either continuous or discontinuous at a set of grid nodes forming a 3-D surface within the (regional or global) modelling domain. In the second part of the paper, we adopt the FV methodology and a spherically symmetric Earth model to generate a suite of predictions sampling a broad class of glacial isostatic adjustment (GIA) data types (3-D crustal motions, long-wavelength gravity anomalies). These calculations, based on either a simple disc load history or a global Late Pleistocene ice load reconstruction (ICE-3G), are benchmarked against predictions generated using the traditional normal-mode approach to GIA. The detailed comparison provides a guide for future analyses (e.g. what grid resolution is required to obtain a specific accuracy?) and it indicates that discrepancies in predictions of 3-D crustal velocities less than 0.1 mm yr-1 are generally obtainable for global grids with ~3 × 106 nodes; however, grids of higher resolution are required to predict large-amplitude (>1 cm yr-1) radial velocities in zones of peak post-glacial uplift (e.g. James bay) to the same level of absolute accuracy. We conclude the paper with a first application of the new formulation to a 3-D problem. Specifically, we consider the impact of mantle viscosity heterogeneity on predictions of present-day 3-D crustal motions in North America. In these tests, the
NASA Technical Reports Server (NTRS)
1998-01-01
Pointwise Inc.'s, Gridgen Software is a system for the generation of 3D (three dimensional) multiple block, structured grids. Gridgen is a visually-oriented, graphics-based interactive code used to decompose a 3D domain into blocks, distribute grid points on curves, initialize and refine grid points on surfaces and initialize volume grid points. Gridgen is available to U.S. citizens and American-owned companies by license.
NASA Astrophysics Data System (ADS)
Chatelin, Robin; Poncet, Philippe
2014-07-01
Particle methods are very convenient to compute transport equations in fluid mechanics as their computational cost is linear and they are not limited by convection stability conditions. To achieve large 3D computations the method must be coupled to efficient algorithms for velocity computations, including a good treatment of non-homogeneities and complex moving geometries. The Penalization method enables to consider moving bodies interaction by adding a term in the conservation of momentum equation. This work introduces a new computational algorithm to solve implicitly in the same step the Penalization term and the Laplace operators, since explicit computations are limited by stability issues, especially at low Reynolds number. This computational algorithm is based on the Sherman-Morrison-Woodbury formula coupled to a GMRES iterative method to reduce the computations to a sequence of Poisson problems: this allows to formulate a penalized Poisson equation as a large perturbation of a standard Poisson, by means of algebraic relations. A direct consequence is the possibility to use fast solvers based on Fast Fourier Transforms for this problem with good efficiency from both the computational and the memory consumption point of views, since these solvers are recursive and they do not perform any matrix assembling. The resulting fluid mechanics computations are very fast and they consume a small amount of memory, compared to a reference solver or a linear system resolution. The present applications focus mainly on a coupling between transport equation and 3D Stokes equations, for studying biological organisms motion in a highly viscous flows with variable viscosity.
NASA Astrophysics Data System (ADS)
Takenaka, H.; Komatsu, M.; Toyokuni, G.; Nakamura, T.; Okamoto, T.
2015-12-01
A simple and efficient finite-difference scheme is developed to compute seismic wave propagation for a partial spherical shell model of a three-dimensionally (3-D) heterogeneous global earth structure. This new scheme solves the elastodynamic equations in the "quasi-Cartesian" coordinate system similar to a local Cartesian one, instead of the spherical coordinate system, with a staggered-grid finite-difference method in time domain (FDTD) which is one of the most popular numerical methods in seismic motion simulations for local to regional scale models. The proposed scheme may be useful for modeling seismic wave propagation in a very large region of sub-global scale beyond regional and less than global ones, where the effects of roundness of earth cannot be ignored. In "quasi-Cartesian" coordinates, x, y, and z are set to be locally in directions of latitude, longitude and depth, respectively. The stencil for each of the x-derivatives then depends on the depth coordinate at the evaluation point, while the stencil for each of the y-derivatives varies with both coordinates of the depth and latitude. In order to reduce lateral variations of the horizontal finite-difference stencils over the computational domain, we move the target area to a location around the equator of the computational spherical coordinate system using a way similar to the conversion from equatorial coordinates to ecliptic coordinates. The developed scheme can be easily implemented in 3-D Cartesian FDTD codes for local to regional scale modeling by changing a very small part of the codes. Our scheme may be able to open a window for multi-scale modeling of seismic wave propagation in scales from sub-global to local one.
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Carlson, Jan-Renee; Derlaga, Joseph M.; Gnoffo, Peter A.; Hammond, Dana P.; Jones, William T.; Kleb, Bil; Lee-Rausch, Elizabeth M.; Nielsen, Eric J.; Park, Michael A.; Rumsey, Christopher L.; Thomas, James L.; Wood, William A.
2015-01-01
This manual describes the installation and execution of FUN3D version 12.7, including optional dependent packages. FUN3D is a suite of computational fluid dynamics simulation and design tools that uses mixed-element unstructured grids in a large number of formats, including structured multiblock and overset grid systems. A discretely-exact adjoint solver enables efficient gradient-based design and grid adaptation to reduce estimated discretization error. FUN3D is available with and without a reacting, real-gas capability. This generic gas option is available only for those persons that qualify for its beta release status.
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Carlson, Jan-Renee; Derlaga, Joseph M.; Gnoffo, Peter A.; Hammond, Dana P.; Jones, William T.; Kleb, Bil; Lee-Rausch, Elizabeth M.; Nielsen, Eric J.; Park, Michael A.; Rumsey, Christopher L.; Thomas, James L.; Wood, William A.
2016-01-01
This manual describes the installation and execution of FUN3D version 12.9, including optional dependent packages. FUN3D is a suite of computational fluid dynamics simulation and design tools that uses mixed-element unstructured grids in a large number of formats, including structured multiblock and overset grid systems. A discretely-exact adjoint solver enables efficient gradient-based design and grid adaptation to reduce estimated discretization error. FUN3D is available with and without a reacting, real-gas capability. This generic gas option is available only for those persons that qualify for its beta release status.
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Carlson, Jan-Renee; Derlaga, Joseph M.; Gnoffo, Peter A.; Hammond, Dana P.; Jones, William T.; Kleb, Bill; Lee-Rausch, Elizabeth M.; Nielsen, Eric J.; Park, Michael A.; Rumsey, Christopher L.; Thomas, James L.; Wood, William A.
2016-01-01
This manual describes the installation and execution of FUN3D version 13.0, including optional dependent packages. FUN3D is a suite of computational fluid dynamics simulation and design tools that uses mixed-element unstructured grids in a large number of formats, including structured multiblock and overset grid systems. A discretely-exact adjoint solver enables efficient gradient-based design and grid adaptation to reduce estimated discretization error. FUN3D is available with and without a reacting, real-gas capability. This generic gas option is available only for those persons that qualify for its beta release status.
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Carlson, Jan-Renee; Derlaga, Joseph M.; Gnoffo, Peter A.; Hammond, Dana P.; Jones, William T.; Kleb, Bil; Lee-Rausch, Elizabeth M.; Nielsen, Eric J.; Park, Michael A.; Rumsey, Christopher L.; Thomas, James L.; Wood, William A.
2015-01-01
This manual describes the installation and execution of FUN3D version 12.8, including optional dependent packages. FUN3D is a suite of computational fluid dynamics simulation and design tools that uses mixed-element unstructured grids in a large number of formats, including structured multiblock and overset grid systems. A discretely-exact adjoint solver enables efficient gradient-based design and grid adaptation to reduce estimated discretization error. FUN3D is available with and without a reacting, real-gas capability. This generic gas option is available only for those persons that qualify for its beta release status.
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Derlaga, Joseph M.; Gnoffo, Peter A.; Hammond, Dana P.; Jones, William T.; Kleb, Bil; Lee-Rausch, Elizabeth M.; Nielsen, Eric J.; Park, Michael A.; Rumsey, Christopher L.; Thomas, James L.; Wood, William A.
2014-01-01
This manual describes the installation and execution of FUN3D version 12.4, including optional dependent packages. FUN3D is a suite of computational fluid dynamics simulation and design tools that uses mixedelement unstructured grids in a large number of formats, including structured multiblock and overset grid systems. A discretely-exact adjoint solver enables efficient gradient-based design and grid adaptation to reduce estimated discretization error. FUN3D is available with and without a reacting, real-gas capability. This generic gas option is available only for those persons that qualify for its beta release status.
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Derlaga, Joseph M.; Gnoffo, Peter A.; Hammond, Dana P.; Jones, William T.; Kleb, William L.; Lee-Rausch, Elizabeth M.; Nielsen, Eric J.; Park, Michael A.; Rumsey, Christopher L.; Thomas, James L.; Wood, William A.
2014-01-01
This manual describes the installation and execution of FUN3D version 12.5, including optional dependent packages. FUN3D is a suite of computational uid dynamics simulation and design tools that uses mixed-element unstructured grids in a large number of formats, including structured multiblock and overset grid systems. A discretely-exact adjoint solver enables ecient gradient-based design and grid adaptation to reduce estimated discretization error. FUN3D is available with and without a reacting, real-gas capability. This generic gas option is available only for those persons that qualify for its beta release status.
NASA Technical Reports Server (NTRS)
Biedron, Robert T.; Derlaga, Joseph M.; Gnoffo, Peter A.; Hammond, Dana P.; Jones, William T.; Kleb, William L.; Lee-Rausch, Elizabeth M.; Nielsen, Eric J.; Park, Michael A.; Rumsey, Christopher L.; Thomas, James L.; Wood, William A.
2015-01-01
This manual describes the installation and execution of FUN3D version 12.6, including optional dependent packages. FUN3D is a suite of computational fluid dynamics simulation and design tools that uses mixed-element unstructured grids in a large number of formats, including structured multiblock and overset grid systems. A discretely-exact adjoint solver enables efficient gradient-based design and grid adaptation to reduce estimated discretization error. FUN3D is available with and without a reacting, real-gas capability. This generic gas option is available only for those persons that qualify for its beta release status.
ERIC Educational Resources Information Center
Planinsic, G.; Kos, M.; Jerman, R.
2004-01-01
It is quite easy to make a version of the well known Cartesian diver experiment that uses two immiscible liquids. This allows students to test their knowledge of density and pressure in explaining the diver's behaviour. Construction details are presented here together with a mathematical model to explain the observations.
Tracy, F.T.
1991-09-01
This report describes new advances in the computational modeling of ground water and seepage using the finite element method (FEM) in conjunction with tools and techniques typically used by the aerospace engineers. The unsolved environmental issues regarding our hazardous and toxic waste problems must be resolved, and significant resources must be placed on this effort. Some military bases are contaminated with hazardous waste that has entered the groundwater domain. A groundwater model that takes into account contaminant flow is therefore critical. First, an extension of the technique of generating an orthogonal structured grid (using the Cauchy-Riemann equations) to automatically generate a flow net for two-dimensional (2-D) steady-state seepage problems is presented for various boundary conditions. Second, a complete implementation of a three-dimensional (3-D) seepage package is described where (1) grid generation is accomplished using the EAGLE program, (2) the seepage and groundwater analysis for either confined or unconfined steady-state flow, homogeneous or inhomogeneous media, and isotropic or anisotropic soil is accomplished with no restriction on the FE grid or requirement of an initial guess of the free surface for unconfined flow problems, and (3) scientific visualization is accomplished using the program FAST developed by NASA.
NASA Astrophysics Data System (ADS)
DeJong, Andrew
Numerical models of fluid-structure interaction have grown in importance due to increasing interest in environmental energy harvesting, airfoil-gust interactions, and bio-inspired formation flying. Powered by increasingly powerful parallel computers, such models seek to explain the fundamental physics behind the complex, unsteady fluid-structure phenomena. To this end, a high-fidelity computational model based on the high-order spectral difference method on 3D unstructured, dynamic meshes has been developed. The spectral difference method constructs continuous solution fields within each element with a Riemann solver to compute the inviscid fluxes at the element interfaces and an averaging mechanism to compute the viscous fluxes. This method has shown promise in the past as a highly accurate, yet sufficiently fast method for solving unsteady viscous compressible flows. The solver is monolithically coupled to the equations of motion of an elastically mounted 3-degree of freedom rigid bluff body undergoing flow-induced lift, drag, and torque. The mesh is deformed using 4 methods: an analytic function, Laplace equation, biharmonic equation, and a bi-elliptic equation with variable diffusivity. This single system of equations -- fluid and structure -- is advanced through time using a 5-stage, 4th-order Runge-Kutta scheme. Message Passing Interface is used to run the coupled system in parallel on up to 240 processors. The solver is validated against previously published numerical and experimental data for an elastically mounted cylinder. The effect of adding an upstream body and inducing wake galloping is observed.
CFL3D, FUN3d, and NSU3D Contributions to the Fifth Drag Prediction Workshop
NASA Technical Reports Server (NTRS)
Park, Michael A.; Laflin, Kelly R.; Chaffin, Mark S.; Powell, Nicholas; Levy, David W.
2013-01-01
Results presented at the Fifth Drag Prediction Workshop using CFL3D, FUN3D, and NSU3D are described. These are calculations on the workshop provided grids and drag adapted grids. The NSU3D results have been updated to reflect an improvement to skin friction calculation on skewed grids. FUN3D results generated after the workshop are included for custom participant generated grids and a grid from a previous workshop. Uniform grid refinement at the design condition shows a tight grouping in calculated drag, where the variation in the pressure component of drag is larger than the skin friction component. At this design condition, A fine-grid drag value was predicted with a smaller drag adjoint adapted grid via tetrahedral adaption to a metric and mixed-element subdivision. The buffet study produced larger variation than the design case, which is attributed to large differences in the predicted side-of-body separation extent. Various modeling and discretization approaches had a strong impact on predicted side-of-body separation. This large wing root separation bubble was not observed in wind tunnel tests indicating that more work is necessary in modeling wing root juncture flows to predict experiments.
Cartesian control of redundant robots
NASA Technical Reports Server (NTRS)
Colbaugh, R.; Glass, K.
1989-01-01
A Cartesian-space position/force controller is presented for redundant robots. The proposed control structure partitions the control problem into a nonredundant position/force trajectory tracking problem and a redundant mapping problem between Cartesian control input F is a set member of the set R(sup m) and robot actuator torque T is a set member of the set R(sup n) (for redundant robots, m is less than n). The underdetermined nature of the F yields T map is exploited so that the robot redundancy is utilized to improve the dynamic response of the robot. This dynamically optimal F yields T map is implemented locally (in time) so that it is computationally efficient for on-line control; however, it is shown that the map possesses globally optimal characteristics. Additionally, it is demonstrated that the dynamically optimal F yields T map can be modified so that the robot redundancy is used to simultaneously improve the dynamic response and realize any specified kinematic performance objective (e.g., manipulability maximization or obstacle avoidance). Computer simulation results are given for a four degree of freedom planar redundant robot under Cartesian control, and demonstrate that position/force trajectory tracking and effective redundancy utilization can be achieved simultaneously with the proposed controller.
SU-E-I-41: Non-Cartesian MR Image Reconstruction with Integrated Gradient Non-Linearity Correction
Tao, S; Trzasko, JD; Polley, TW; Shu, Y; Bernstein, MA
2014-06-01
Purpose: Nonlinearities in the spatial encoding gradients of MRI systems cause geometric distortion in images. Typically, this is retrospectively corrected via image-domain interpolation (a.k.a., “gradwarp”) albeit with a loss of spatial resolution. For non-Cartesian MRI, the latter problem is exaggerated by noise and undersampling artifact. In this study, we describe a novel correction strategy that accounts for gradient nonlinearities during — rather than after — non-Cartesian MRI reconstruction, and demonstrate that this approach mitigates the resolution loss that can occur with standard methods. Methods: To test the proposed method, the American College of Radiology (ACR) quality control phantom was scanned on at 1.5 T (General Electric, v16.0, “zoom” gradient) using a 1.6x undersampled 3D non- Cartesian Shells trajectory (GRE, FOV=24 cm3, 120 shells, 16552 shots, 512 readout, matrix=2403). Image reconstruction was first performed via standard k-space density-compensated gridding and retrospectively corrected via cubic spline interpolation. Image reconstruction was then separately performed using a k-space and image-domain densitycompensated type-3 non-uniform fast Fourier transform (NUFFT), which provides a direct mapping between non-Cartesian k-space samples and warped image space voxel locations. Thus, no separate distortion correction procedure is needed for the proposed approach. The gradient distortion field was determined using vendor provided calibration data. Results: Phantom scan results show that both processing approaches successfully correct geometric distortion. However, visual inspection of the ACR phantom spatial resolution inserts shows that the proposed strategy preserves the resolution of the nominal (uncorrected) reconstruction while “gradwarp” imparts marked spatial blurring (especially for the 1.0 and 1.1 mm inserts) and thus resolution loss. Conclusion: We've presented a novel reconstruction strategy for non-Cartesian MRI
NASA Astrophysics Data System (ADS)
Popov, Anton; Kaus, Boris
2015-04-01
This software project aims at bringing the 3D lithospheric deformation modeling to a qualitatively different level. Our code LaMEM (Lithosphere and Mantle Evolution Model) is based on the following building blocks: * Massively-parallel data-distributed implementation model based on PETSc library * Light, stable and accurate staggered-grid finite difference spatial discretization * Marker-in-Cell pedictor-corector time discretization with Runge-Kutta 4-th order * Elastic stress rotation algorithm based on the time integration of the vorticity pseudo-vector * Staircase-type internal free surface boundary condition without artificial viscosity contrast * Geodynamically relevant visco-elasto-plastic rheology * Global velocity-pressure-temperature Newton-Raphson nonlinear solver * Local nonlinear solver based on FZERO algorithm * Coupled velocity-pressure geometric multigrid preconditioner with Galerkin coarsening Staggered grid finite difference, being inherently Eulerian and rather complicated discretization method, provides no natural treatment of free surface boundary condition. The solution based on the quasi-viscous sticky-air phase introduces significant viscosity contrasts and spoils the convergence of the iterative solvers. In LaMEM we are currently implementing an approximate stair-case type of the free surface boundary condition which excludes the empty cells and restores the solver convergence. Because of the mutual dependence of the stress and strain-rate tensor components, and their different spatial locations in the grid, there is no straightforward way of implementing the nonlinear rheology. In LaMEM we have developed and implemented an efficient interpolation scheme for the second invariant of the strain-rate tensor, that solves this problem. Scalable efficient linear solvers are the key components of the successful nonlinear problem solution. In LaMEM we have a range of PETSc-based preconditioning techniques that either employ a block factorization of
NASA Astrophysics Data System (ADS)
Pletinckx, D.
2011-09-01
The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.
NASA Astrophysics Data System (ADS)
Lamer, K.; Tatarevic, A.; Jo, I.; Kollias, P.
2013-11-01
The Scanning ARM Cloud Radars (SACR's) provide continuous atmospheric observations aspiring to capture the 3-D cloud-scale structure. Sampling clouds in 3-D is challenging due to their temporal-spatial scales, the need to sample the sky at high elevations and cloud radar limitations. Thus, a common scan strategy is to repetitively slice the atmosphere from horizon to horizon as clouds advect over the radar (Cross-Wind Range Height Indicator - CWRHI). Here, the processing and gridding of the SACR CW-RHI scans are presented. First, the SACR sample observations from the ARM Oklahoma (SGP) and Cape-Cod (PVC) sites are post-processed (detection mask, velocity de-aliasing and gaseous attenuation correction). The resulting radial Doppler moment fields are then mapped to Cartesian coordinates with time as one of the dimension. The Cartesian-gridded Doppler velocity fields are next decomposed into the horizontal wind velocity contribution and the vertical Doppler velocity component. For validation purposes, all gridded and retrieved fields are compared to collocated zenith pointing ARM cloud radar measurements. We consider that the SACR sensitivity loss with range, the cloud type observed and the research purpose should be considered in determining the gridded domain size. Our results also demonstrate that the gridded SACR observations resolve the main features of low and high stratiform clouds. It is established that the CW-RHI observations complemented with processing techniques could lead to robust 3-D clouds dynamical representations up to 25-30° off zenith. The proposed gridded products are expected to advance our understanding of 3-D cloud morphology, dynamics, anisotropy and lead to more realistic 3-D radiative transfer calculations.
NASA Astrophysics Data System (ADS)
Lamer, K.; Tatarevic, A.; Jo, I.; Kollias, P.
2014-04-01
The scanning Atmospheric Radiation Measurement (ARM) cloud radars (SACRs) provide continuous atmospheric observations aspiring to capture the 3-D cloud-scale structure. Sampling clouds in 3-D is challenging due to their temporal-spatial scales, the need to sample the sky at high elevations and cloud radar limitations. Thus, a suggested scan strategy is to repetitively slice the atmosphere from horizon to horizon as clouds advect over the radar (Cross-Wind Range-Height Indicator - CW-RHI). Here, the processing and gridding of the SACR CW-RHI scans are presented. First, the SACR sample observations from the ARM Southern Great Plains and Cape Cod sites are post-processed (detection mask, gaseous attenuation correction, insect filtering and velocity de-aliasing). The resulting radial Doppler moment fields are then mapped to Cartesian coordinates with time as one of the dimensions. Next the Cartesian-gridded Doppler velocity fields are decomposed into the horizontal wind velocity contribution and the vertical Doppler velocity component. For validation purposes, all gridded and retrieved fields are compared to collocated zenith-pointing ARM cloud radar measurements. We consider that the SACR sensitivity loss with range, the cloud type observed and the research purpose should be considered in determining the gridded domain size. Our results also demonstrate that the gridded SACR observations resolve the main features of low and high stratiform clouds. It is established that the CW-RHI observations complemented with processing techniques could lead to robust 3-D cloud dynamical representations up to 25-30 degrees off zenith. The proposed gridded products are expected to advance our understanding of 3-D cloud morphology, dynamics and anisotropy and lead to more realistic 3-D radiative transfer calculations.
3-D Spherical Mantle Convection with Radial Basis Functions
NASA Astrophysics Data System (ADS)
Flyer, N.; Wright, G. B.; Yuen, D.
2008-12-01
In the past 25 years a wide variety of numerical methods, such as finite-difference, finite-volume , finite- elements, and pseudospectral methods have been employed to study the problem of 3-D mantle convection. All have specialized strengths but also serious weaknesses. The first three methods are generally considered low-order and can involve high algorithmic complexity (as in triangular elements). Spectrally accurate methods do not practically allow for local mesh refinement and often involve cumbersome algebra. Here, we introduce a new grid/mesh-free approach using radial basis functions (RBFs). It has the advantage of being spectrally accurate for arbitrary node layouts in multi-dimensions with extreme algorithmic simplicity, and naturally permits local node refinement. It has been shown for shallow-water equations and vortex flows that RBFs outperform other numerical methods in the sense that they obtain a much higher accuracy for the same spatial resolution while being able to take unusually large time steps. One virtue of the RBF scheme is the ability to use a simple Cartesian geometry while implementing the required boundary conditions for the temperature, velocity and stresses on a spherical surface of both the outer( planetary surface ) and inner shell ( core-mantle boundary ). The velocity and stress components are expressed in terms of the scalar potential approach (Zebib and Schubert, 1982) and the other remaining variable is the perturbed temperature field. We have studied the problem from the onset of convection to a modest nonlinear regime.
On Efficient Parallel Implementation of Moving Body Overset Grid Methods
NASA Technical Reports Server (NTRS)
Wissink, Andrew M.; Meakin, Robert L.; Warmbrodt, William (Technical Monitor)
1997-01-01
An investigation into the parallel performance of moving-body overset grid methods will be presented. Parallel versions of the OVERFLOW flow solver, DCF3D domain connectivity software, and SIXDO six-degree-of-freedom routine are coupled with an automatic load balance routine and tested for 3D Navier-Stokes calculations on the IBM SP2. The primary source of parallel inefficiency in moving and problems are the domain connectivity costs with DCF 3D. Although this algorithm constitutes a relatively low fraction of the total solution cost (e.g. 10-20%) in calculations on serial machines, the consequently cause a significant degradation in the overall parallel performance. The paper will highlight some approaches for improving the scalability of DCF3D. The paper will present results of a proposed new load balancing scheme that seeks more equal distribution of the inter-grid boundary points in order to more evenly load balance the donor search costs associated with DCF3D. Some preliminary results will also be given from a new solution-adaption algorithm coupled with OVERFLOW which incorporates overset cartesian grids with various levels of refinement. The measured parallel performance from a descending delta-wing configuration and a generic store-separation from a wing/pylon case will be presented.
Modeling ICF Spherical Implosion Instabilities in 3D with Exact Energy Conservation
NASA Astrophysics Data System (ADS)
Fatenejad, Milad; Moses, Gregory
2009-11-01
We will present the results of 3D instability simulations performed on spherically convergent geometries with a new 3D Lagrangian hydrodynamics code, cooper. The code uses a compatible discretization of the conservation equations to ensure that energy is conserved to within machine round off error [Caramana JCP 146, 227 (1998)]. Modifications are made to the discrete equations to ensure that spherically symmetric implosions can be performed on non-orthogonal Cartesian grids [Caramana JCP 157, 89 (2000)]. Subzonal restoring forces counteract anomalous grid distortions [Carmana JCP 142, 521 (1998)] and an edge-centered viscosity is used to capture shocks [Caramana JCP 215, 385 (2006)]. Cooper is parallelized using domain decomposition. This is necessary due to the large processor and memory requirements associated with simulations in three dimensions. Advanced computational libraries are used to reduce the complexity of the code without sacrificing features. One example is the MOAB library [Tautges Engr. Comput. 20, 286 (2004)] which manages the mesh and is responsible for communicating information between processes.
3d-3d correspondence revisited
NASA Astrophysics Data System (ADS)
Chung, Hee-Joong; Dimofte, Tudor; Gukov, Sergei; Sułkowski, Piotr
2016-04-01
In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d {N}=2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. We also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.
High-Resolution Variable-Density 3D Cones Coronary MRA
Addy, Nii Okai; Ingle, R. Reeve; Wu, Holden H.; Hu, Bob S.; Nishimura, Dwight G.
2015-01-01
Purpose To improve the spatial/temporal resolution of whole-heart coronary MR angiography (CMRA) by developing a variable-density (VD) 3D cones acquisition suitable for image reconstruction with parallel imaging and compressed sensing techniques. Methods A VD 3D cones trajectory design incorporates both radial and spiral trajectory undersampling techniques to achieve higher resolution. This design is used to generate a VD cones trajectory with 0.8 mm/66 ms isotropic spatial/temporal resolution, using a similar number of readouts as our previous fully sampled cones trajectory (1.2 mm/100 ms). Scans of volunteers and patients are performed to evaluate the performance of the VD trajectory, using non-Cartesian L1-ESPIRiT for high-resolution image reconstruction. Results With gridding reconstruction, the high-resolution scans experience an expected drop in signal-to-noise and contrast-to-noise ratios, but with L1-ESPIRiT, the apparent noise is substantially reduced. Compared to 1.2 mm images, in each volunteer, the L1-ESPIRiT 0.8 mm images exhibit higher vessel sharpness values in the right and left anterior descending arteries. Conclusion CMRA with isotropic sub-millimeter spatial resolution and high temporal resolution can be performed with VD 3D cones to improve the depiction of coronary arteries. PMID:26172829
Shim3d Helmholtz Solution Package
2009-01-29
This suite of codes solves the Helmholtz Equation for the steady-state propagation of single-frequency electromagnetic radiation in an arbitrary 2D or 3D dielectric medium. Materials can be either transparent or absorptive (including metals) and are described entirely by their shape and complex dielectric constant. Dielectric boundaries are assumed to always fall on grid boundaries and the material within a single grid cell is considered to be uniform. Input to the problem is in the formmore » of a Dirichlet boundary condition on a single boundary, and may be either analytic (Gaussian) in shape, or a mode shape computed using a separate code (such as the included eigenmode solver vwave20), and written to a file. Solution is via the finite difference method using Jacobi iteration for 3D problems or direct matrix inversion for 2D problems. Note that 3D problems that include metals will require different iteration parameters than described in the above reference. For structures with curved boundaries not easily modeled on a rectangular grid, the auxillary codes helmholtz11(2D), helm3d (semivectoral), and helmv3d (full vectoral) are provided. For these codes the finite difference equations are specified on a topological regular triangular grid and solved using Jacobi iteration or direct matrix inversion as before. An automatic grid generator is supplied.« less
NASA Astrophysics Data System (ADS)
2013-09-01
WE RECOMMEND Marie Curie and Her Daughters An insightful study of a resilient and ingenious family and their achievements Cumulus Simple to install and operate and with obvious teaching applications, this weather station 'donationware' is as easy to recommend as it is to use Alpha Particle Scattering Apparatus Good design and construction make for good results National Grid Transmission Model Despite its expense, this resource offers excellent value Einstein's Physics A vivid, accurate, compelling and rigorous treatment, but requiring an investment of time and thought WORTH A LOOK 3D Magnetic Tube Magnetic fields in three dimensions at a low cost Barton's Pendulums A neat, well-made and handy variant, but not a replacement for the more traditional version Weather Station Though not as robust or substantial as hoped for, this can be put to good use with the right software WEB WATCH An online experiment and worksheet are useful for teaching motor efficiency, a glance at CERN, and NASA's interesting information on the alpha-magnetic spectrometer and climate change
NASA Astrophysics Data System (ADS)
Meulien Ohlmann, Odile
2013-02-01
Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?
Adjoint Formulation for an Embedded-Boundary Cartesian Method
NASA Technical Reports Server (NTRS)
Nemec, Marian; Aftosmis, Michael J.; Murman, Scott M.; Pulliam, Thomas H.
2004-01-01
Many problems in aerodynamic design can be characterized by smooth and convex objective functions. This motivates the use of gradient-based algorithms, particularly for problems with a large number of design variables, to efficiently determine optimal shapes and configurations that maximize aerodynamic performance. Accurate and efficient computation of the gradient, however, remains a challenging task. In optimization problems where the number of design variables dominates the number of objectives and flow- dependent constraints, the cost of gradient computations can be significantly reduced by the use of the adjoint method. The problem of aerodynamic optimization using the adjoint method has been analyzed and validated for both structured and unstructured grids. The method has been applied to design problems governed by the potential, Euler, and Navier-Stokes equations and can be subdivided into the continuous and discrete formulations. Giles and Pierce provide a detailed review of both approaches. Most implementations rely on grid-perturbation or mapping procedures during the gradient computation that explicitly couple changes in the surface shape to the volume grid. The solution of the adjoint equation is usually accomplished using the same scheme that solves the governing flow equations. Examples of such code reuse include multistage Runge-Kutta schemes coupled with multigrid, approximate-factorization, line-implicit Gauss-Seidel, and also preconditioned GMRES. The development of the adjoint method for aerodynamic optimization problems on Cartesian grids has been limited. In contrast to implementations on structured and unstructured grids, Cartesian grid methods decouple the surface discretization from the volume grid. This feature makes Cartesian methods well suited for the automated analysis of complex geometry problems, and consequently a promising approach to aerodynamic optimization. Melvin e t al. developed an adjoint formulation for the TRANAIR code
High Energy Boundary Conditions for a Cartesian Mesh Euler Solver
NASA Technical Reports Server (NTRS)
Pandya, Shishir; Murman, Scott; Aftosmis, Michael
2003-01-01
Inlets and exhaust nozzles are common place in the world of flight. Yet, many aerodynamic simulation packages do not provide a method of modelling such high energy boundaries in the flow field. For the purposes of aerodynamic simulation, inlets and exhausts are often fared over and it is assumed that the flow differences resulting from this assumption are minimal. While this is an adequate assumption for the prediction of lift, the lack of a plume behind the aircraft creates an evacuated base region thus effecting both drag and pitching moment values. In addition, the flow in the base region is often mis-predicted resulting in incorrect base drag. In order to accurately predict these quantities, a method for specifying inlet and exhaust conditions needs to be available in aerodynamic simulation packages. A method for a first approximation of a plume without accounting for chemical reactions is added to the Cartesian mesh based aerodynamic simulation package CART3D. The method consists of 3 steps. In the first step, a components approach where each triangle is assigned a component number is used. Here, a method for marking the inlet or exhaust plane triangles as separate components is discussed. In step two, the flow solver is modified to accept a reference state for the components marked inlet or exhaust. In the third step, the flow solver uses these separated components and the reference state to compute the correct flow condition at that triangle. The present method is implemented in the CART3D package which consists of a set of tools for generating a Cartesian volume mesh from a set of component triangulations. The Euler equations are solved on the resulting unstructured Cartesian mesh. The present methods is implemented in this package and its usefulness is demonstrated with two validation cases. A generic missile body is also presented to show the usefulness of the method on a real world geometry.
ERIC Educational Resources Information Center
Hastings, S. K.
2002-01-01
Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)
CUDA accelerated uniform re-sampling for non-Cartesian MR reconstruction.
Feng, Chaolu; Zhao, Dazhe
2015-01-01
A grid-driven gridding (GDG) method is proposed to uniformly re-sample non-Cartesian raw data acquired in PROPELLER, in which a trajectory window for each Cartesian grid is first computed. The intensity of the reconstructed image at this grid is the weighted average of raw data in this window. Taking consider of the single instruction multiple data (SIMD) property of the proposed GDG, a CUDA accelerated method is then proposed to improve the performance of the proposed GDG. Two groups of raw data sampled by PROPELLER in two resolutions are reconstructed by the proposed method. To balance computation resources of the GPU and obtain the best performance improvement, four thread-block strategies are adopted. Experimental results demonstrate that although the proposed GDG is more time consuming than traditional DDG, the CUDA accelerated GDG is almost 10 times faster than traditional DDG. PMID:26406102
A Deformable Generic 3D Model of Haptoral Anchor of Monogenean
Teo, Bee Guan; Dhillon, Sarinder Kaur; Lim, Lee Hong Susan
2013-01-01
In this paper, a digital 3D model which allows for visualisation in three dimensions and interactive manipulation is explored as a tool to help us understand the structural morphology and elucidate the functions of morphological structures of fragile microorganisms which defy live studies. We developed a deformable generic 3D model of haptoral anchor of dactylogyridean monogeneans that can subsequently be deformed into different desired anchor shapes by using direct manipulation deformation technique. We used point primitives to construct the rectangular building blocks to develop our deformable 3D model. Point primitives are manually marked on a 2D illustration of an anchor on a Cartesian graph paper and a set of Cartesian coordinates for each point primitive is manually extracted from the graph paper. A Python script is then written in Blender to construct 3D rectangular building blocks based on the Cartesian coordinates. The rectangular building blocks are stacked on top or by the side of each other following their respective Cartesian coordinates of point primitive. More point primitives are added at the sites in the 3D model where more structural variations are likely to occur, in order to generate complex anchor structures. We used Catmull-Clark subdivision surface modifier to smoothen the surface and edge of the generic 3D model to obtain a smoother and more natural 3D shape and antialiasing option to reduce the jagged edges of the 3D model. This deformable generic 3D model can be deformed into different desired 3D anchor shapes through direct manipulation deformation technique by aligning the vertices (pilot points) of the newly developed deformable generic 3D model onto the 2D illustrations of the desired shapes and moving the vertices until the desire 3D shapes are formed. In this generic 3D model all the vertices present are deployed for displacement during deformation. PMID:24204903
A deformable generic 3D model of haptoral anchor of Monogenean.
Teo, Bee Guan; Dhillon, Sarinder Kaur; Lim, Lee Hong Susan
2013-01-01
In this paper, a digital 3D model which allows for visualisation in three dimensions and interactive manipulation is explored as a tool to help us understand the structural morphology and elucidate the functions of morphological structures of fragile microorganisms which defy live studies. We developed a deformable generic 3D model of haptoral anchor of dactylogyridean monogeneans that can subsequently be deformed into different desired anchor shapes by using direct manipulation deformation technique. We used point primitives to construct the rectangular building blocks to develop our deformable 3D model. Point primitives are manually marked on a 2D illustration of an anchor on a Cartesian graph paper and a set of Cartesian coordinates for each point primitive is manually extracted from the graph paper. A Python script is then written in Blender to construct 3D rectangular building blocks based on the Cartesian coordinates. The rectangular building blocks are stacked on top or by the side of each other following their respective Cartesian coordinates of point primitive. More point primitives are added at the sites in the 3D model where more structural variations are likely to occur, in order to generate complex anchor structures. We used Catmull-Clark subdivision surface modifier to smoothen the surface and edge of the generic 3D model to obtain a smoother and more natural 3D shape and antialiasing option to reduce the jagged edges of the 3D model. This deformable generic 3D model can be deformed into different desired 3D anchor shapes through direct manipulation deformation technique by aligning the vertices (pilot points) of the newly developed deformable generic 3D model onto the 2D illustrations of the desired shapes and moving the vertices until the desire 3D shapes are formed. In this generic 3D model all the vertices present are deployed for displacement during deformation. PMID:24204903
On automating domain connectivity for overset grids
NASA Technical Reports Server (NTRS)
Chiu, Ing-Tsau
1994-01-01
An alternative method for domain connectivity among systems of overset grids is presented. Reference uniform Cartesian systems of points are used to achieve highly efficient domain connectivity, and form the basis for a future fully automated system. The Cartesian systems are used to approximated body surfaces and to map the computational space of component grids. By exploiting the characteristics of Cartesian Systems, Chimera type hole-cutting and identification of donor elements for intergrid boundary points can be carried out very efficiently. The method is tested for a range of geometrically complex multiple-body overset grid systems.
Crandall, K.R.
1987-08-01
TRACE 3-D is an interactive beam-dynamics program that calculates the envelopes of a bunched beam, including linear space-charge forces, through a user-defined transport system. TRACE 3-D provides an immediate graphics display of the envelopes and the phase-space ellipses and allows nine types of beam-matching options. This report describes the beam-dynamics calculations and gives detailed instruction for using the code. Several examples are described in detail.
Fallon FORGE 3D Geologic Model
Doug Blankenship
2016-03-01
An x,y,z scattered data file for the 3D geologic model of the Fallon FORGE site. Model created in Earthvision by Dynamic Graphic Inc. The model was constructed with a grid spacing of 100 m. Geologic surfaces were extrapolated from the input data using a minimum tension gridding algorithm. The data file is tabular data in a text file, with lithology data associated with X,Y,Z grid points. All the relevant information is in the file header (the spatial reference, the projection etc.) In addition all the fields in the data file are identified in the header.
Parameter Studies, time-dependent simulations and design with automated Cartesian methods
NASA Technical Reports Server (NTRS)
Aftosmis, Michael
2005-01-01
Over the past decade, NASA has made a substantial investment in developing adaptive Cartesian grid methods for aerodynamic simulation. Cartesian-based methods played a key role in both the Space Shuttle Accident Investigation and in NASA's return to flight activities. The talk will provide an overview of recent technological developments focusing on the generation of large-scale aerodynamic databases, automated CAD-based design, and time-dependent simulations with of bodies in relative motion. Automation, scalability and robustness underly all of these applications and research in each of these topics will be presented.
Madsen, N.; Steich, D.; Cook, G.
1995-08-23
The DSI3D-RCS code is designed to numerically evaluate radar cross sections on complex objects by solving Maxwell`s curl equations in the time-domain and in three space dimensions. The code has been designed to run on the new parallel processing computers as well as on conventional serial computers. The DSI3D-RCS code is unique for the following reasons: Allows the use of unstructured non-orthogonal grids, allows a variety of cell or element types, reduces to be the Finite Difference Time Domain (FDTD) method when orthogonal grids are used, preserves charge or divergence locally (and globally), is conditionally stable, is selectively non-dissipative, and is accurate for non-orthogonal grids. This method is derived using a Discrete Surface Integration (DSI) technique. As formulated, the DSI technique can be used with essentially arbitrary unstructured grids composed of convex polyhedral cells. This implementation of the DSI algorithm allows the use of unstructured grids that are composed of combinations of non-orthogonal the use of unstructured grids that are composed of combinations of non-orthogonal hexahedrons, tetrahedrons, triangular prisms and pyramids. This algorithm reduces to the conventional FDTD method when applied on a structured orthogonal hexahedral grid.
NASA Astrophysics Data System (ADS)
Oldham, Mark
2015-01-01
Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.
NASA Astrophysics Data System (ADS)
Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran
2016-03-01
We study the conformal bootstrap for a 4-point function of fermions < ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge C T . We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N . We also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.
PLOT3D Export Tool for Tecplot
NASA Technical Reports Server (NTRS)
Alter, Stephen
2010-01-01
The PLOT3D export tool for Tecplot solves the problem of modified data being impossible to output for use by another computational science solver. The PLOT3D Exporter add-on enables the use of the most commonly available visualization tools to engineers for output of a standard format. The exportation of PLOT3D data from Tecplot has far reaching effects because it allows for grid and solution manipulation within a graphical user interface (GUI) that is easily customized with macro language-based and user-developed GUIs. The add-on also enables the use of Tecplot as an interpolation tool for solution conversion between different grids of different types. This one add-on enhances the functionality of Tecplot so significantly, it offers the ability to incorporate Tecplot into a general suite of tools for computational science applications as a 3D graphics engine for visualization of all data. Within the PLOT3D Export Add-on are several functions that enhance the operations and effectiveness of the add-on. Unlike Tecplot output functions, the PLOT3D Export Add-on enables the use of the zone selection dialog in Tecplot to choose which zones are to be written by offering three distinct options - output of active, inactive, or all zones (grid blocks). As the user modifies the zones to output with the zone selection dialog, the zones to be written are similarly updated. This enables the use of Tecplot to create multiple configurations of a geometry being analyzed. For example, if an aircraft is loaded with multiple deflections of flaps, by activating and deactivating different zones for a specific flap setting, new specific configurations of that aircraft can be easily generated by only writing out specific zones. Thus, if ten flap settings are loaded into Tecplot, the PLOT3D Export software can output ten different configurations, one for each flap setting.
Coolant side heat transfer with rotation: User manual for 3D-TEACH with rotation
NASA Technical Reports Server (NTRS)
Syed, S. A.; James, R. H.
1989-01-01
This program solves the governing transport equations in Reynolds average form for the flow of a 3-D, steady state, viscous, heat conducting, multiple species, single phase, Newtonian fluid with combustion. The governing partial differential equations are solved in physical variables in either a Cartesian or cylindrical coordinate system. The effects of rotation on the momentum and enthalpy calculations modeled in Cartesian coordinates are examined. The flow of the fluid should be confined and subsonic with a maximum Mach number no larger than 0.5. This manual describes the operating procedures and input details for executing a 3D-TEACH computation.
3D barcodes: theoretical aspects and practical implementation
NASA Astrophysics Data System (ADS)
Gladstein, David; Kakarala, Ramakrishna; Baharav, Zachi
2015-02-01
This paper introduces the concept of three dimensional (3D) barcodes. A 3D barcode is composed of an array of 3D cells, called modules, and each can be either filled or empty, corresponding to two possible values of a bit. These barcodes have great theoretical promise thanks to their very large information capacity, which grows as the cube of the linear size of the barcode, and in addition are becoming practically manufacturable thanks to the ubiquitous use of 3D printers. In order to make these 3D barcodes practical for consumers, it is important to keep the decoding simple using commonly available means like smartphones. We therefore limit ourselves to decoding mechanisms based only on three projections of the barcode, which imply specific constraints on the barcode itself. The three projections produce the marginal sums of the 3D cube, which are the counts of filled-in modules along each Cartesian axis. In this paper we present some of the theoretical aspects of the 2D and 3D cases, and describe the resulting complexity of the 3D case. We then describe a method to reduce these complexities into a practical application. The method features an asymmetric coding scheme, where the decoder is much simpler than the encoder. We close by demonstrating 3D barcodes we created and their usability.
Madsen, N.; Steich, D.; Cook, G.; Eme, B.
1995-03-16
The DSI3D-RCS code is designed to numerically evaluate radar cross sections on complex objects by solving Maxwell`s curl equations in the time-domain and in three space dimensions. The code has been designed to run on the new parallel processing computers as well as on conventional serial computers. The DSI3D-RCS code is unique for the following reasons: Allows the use of unstructured non-orthogonal grids, allows a variety of cell or element types, reduces to be the Finite Difference Time Domain (FDTD) method when orthogonal grids are used, preserves charge or divergence locally (and globally), is conditionally stable, is non-dissipative, is accurate for non-orthogonal grids. This method is derived using a Discrete Surface Integration (DSI) technique. As formulated, the DSI technique can be used with essentially arbitrary unstructured grids composed of convex polyhedral cells. This implementation of the DSI algorithm allows the use of unstructured grids that are composed of combinations of non-orthogonal hexahedrons, tetrahedrons, triangular prisms and pyramids. This algorithm reduces to the conventional FDTD method when applied on a structured orthogonal hexahedral grid.
PLOT3D/AMES, DEC VAX VMS VERSION USING DISSPLA (WITH TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
PLOT3D/AMES, DEC VAX VMS VERSION USING DISSPLA (WITHOUT TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P. G.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
Turing instabilities on Cartesian product networks
Asllani, Malbor; Busiello, Daniel M.; Carletti, Timoteo; Fanelli, Duccio; Planchon, Gwendoline
2015-01-01
The problem of Turing instabilities for a reaction-diffusion system defined on a complex Cartesian product network is considered. To this end we operate in the linear regime and expand the time dependent perturbation on a basis formed by the tensor product of the eigenvectors of the discrete Laplacian operators, associated to each of the individual networks that build the Cartesian product. The dispersion relation which controls the onset of the instability depends on a set of discrete wavelengths, the eigenvalues of the aforementioned Laplacians. Patterns can develop on the Cartesian network, if they are supported on at least one of its constitutive sub-graphs. Multiplex networks are also obtained under specific prescriptions. In this case, the criteria for the instability reduce to compact explicit formulae. Numerical simulations carried out for the Mimura-Murray reaction kinetics confirm the adequacy of the proposed theory. PMID:26245138
Turing instabilities on Cartesian product networks
NASA Astrophysics Data System (ADS)
Asllani, Malbor; Busiello, Daniel M.; Carletti, Timoteo; Fanelli, Duccio; Planchon, Gwendoline
2015-08-01
The problem of Turing instabilities for a reaction-diffusion system defined on a complex Cartesian product network is considered. To this end we operate in the linear regime and expand the time dependent perturbation on a basis formed by the tensor product of the eigenvectors of the discrete Laplacian operators, associated to each of the individual networks that build the Cartesian product. The dispersion relation which controls the onset of the instability depends on a set of discrete wavelengths, the eigenvalues of the aforementioned Laplacians. Patterns can develop on the Cartesian network, if they are supported on at least one of its constitutive sub-graphs. Multiplex networks are also obtained under specific prescriptions. In this case, the criteria for the instability reduce to compact explicit formulae. Numerical simulations carried out for the Mimura-Murray reaction kinetics confirm the adequacy of the proposed theory.
Turing instabilities on Cartesian product networks.
Asllani, Malbor; Busiello, Daniel M; Carletti, Timoteo; Fanelli, Duccio; Planchon, Gwendoline
2015-01-01
The problem of Turing instabilities for a reaction-diffusion system defined on a complex Cartesian product network is considered. To this end we operate in the linear regime and expand the time dependent perturbation on a basis formed by the tensor product of the eigenvectors of the discrete Laplacian operators, associated to each of the individual networks that build the Cartesian product. The dispersion relation which controls the onset of the instability depends on a set of discrete wavelengths, the eigenvalues of the aforementioned Laplacians. Patterns can develop on the Cartesian network, if they are supported on at least one of its constitutive sub-graphs. Multiplex networks are also obtained under specific prescriptions. In this case, the criteria for the instability reduce to compact explicit formulae. Numerical simulations carried out for the Mimura-Murray reaction kinetics confirm the adequacy of the proposed theory. PMID:26245138
NASA Astrophysics Data System (ADS)
Kent, G. M.; Harding, A. J.; Babcock, J. M.; Orcutt, J. A.; Bazin, S.; Singh, S.; Detrick, R. S.; Canales, J. P.; Carbotte, S. M.; Diebold, J.
2002-12-01
, even if one data object lies behind another. Stereoscopic viewing is another powerful tool to investigate 3-D relationships between objects. This form of immersion is constructed through viewing two separate images that are interleaved--typically 48 frames per second, per eye--and synced through an emitter and a set of specialized polarizing eyeglasses. The polarizing lenses flicker at an equivalent rate, blanking the eye for which a particular image was not drawn, producing the desired stereo effect. Volumetric visualization of the ARAD 3-D seismic dataset will be presented. The effective use of transparency reveals detailed structure of the melt-lens beneath the 9°03'N overlapping spreading center (OSC) along the East Pacific Rise, including melt-filled fractures within the propagating rift-tip. In addition, range-gated images of seismic reflectivity will be co-registered to investigate the physical properties (melt versus mush) of the magma chamber at this locale. Surface visualization of a dense, 2-D grid of MCS seismic data beneath Axial seamount (Juan de Fuca Ridge) will also be highlighted, including relationships between the summit caldera and rift zones, and the underlying (and humongous) magma chamber. A selection of Quicktime movies will be shown. Popcorn will be served, really!
PLOT3D/AMES, GENERIC UNIX VERSION USING DISSPLA (WITHOUT TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
PLOT3D/AMES, GENERIC UNIX VERSION USING DISSPLA (WITH TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
NASA Astrophysics Data System (ADS)
Goto, H.; Nakata, T.; Watanabe, M.; Suzuki, Y.; Izumi, N.; Nishizawa, A.; Horiuchi, D.; Kido, Y. N.
2013-12-01
that is tilted to the west, indicating up-growing of Taito spur. Northeastern part of Izu bar on Philippine Sea plate is characterized by rather smooth extensive convex slope between 1500m-7500m for over 200km long along the trench. On the lower part of the slope below 6000m, several gullies such as Mikura canyon and Kita-Hachijo canyon dissecting the slope forms rapids, probably due to continuous up-warping by subsurface thrusting dipping to the west under the slope. It is noteworthy that we can identify prominent active tectonic features on even very deep sea-floor along the plate boundaries, by using 3D images produced from 150 meter grid DEM.
NASA Astrophysics Data System (ADS)
Iizuka, Keigo
2008-02-01
In order to circumvent the fact that only one observer can view the image from a stereoscopic microscope, an attachment was devised for displaying the 3D microscopic image on a large LCD monitor for viewing by multiple observers in real time. The principle of operation, design, fabrication, and performance are presented, along with tolerance measurements relating to the properties of the cellophane half-wave plate used in the design.
FUN3D and CFL3D Computations for the First High Lift Prediction Workshop
NASA Technical Reports Server (NTRS)
Park, Michael A.; Lee-Rausch, Elizabeth M.; Rumsey, Christopher L.
2011-01-01
Two Reynolds-averaged Navier-Stokes codes were used to compute flow over the NASA Trapezoidal Wing at high lift conditions for the 1st AIAA CFD High Lift Prediction Workshop, held in Chicago in June 2010. The unstructured-grid code FUN3D and the structured-grid code CFL3D were applied to several different grid systems. The effects of code, grid system, turbulence model, viscous term treatment, and brackets were studied. The SST model on this configuration predicted lower lift than the Spalart-Allmaras model at high angles of attack; the Spalart-Allmaras model agreed better with experiment. Neglecting viscous cross-derivative terms caused poorer prediction in the wing tip vortex region. Output-based grid adaptation was applied to the unstructured-grid solutions. The adapted grids better resolved wake structures and reduced flap flow separation, which was also observed in uniform grid refinement studies. Limitations of the adaptation method as well as areas for future improvement were identified.
Moment Closures on Two-Dimensional Cartesian Grids
2015-07-31
Some moment methods for kinetic equations are complicated and take time to develop. Over the course of a couple years, this software was developed to test different closures on standard test problems in the literature. With this software, researchers in the field of moment closures will be able to rapidly test new methods.
PLOT3D/AMES, UNIX SUPERCOMPUTER AND SGI IRIS VERSION (WITHOUT TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
PLOT3D/AMES, UNIX SUPERCOMPUTER AND SGI IRIS VERSION (WITH TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
PLOT3D/AMES, SGI IRIS VERSION (WITHOUT TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
PLOT3D/AMES, SGI IRIS VERSION (WITH TURB3D)
NASA Technical Reports Server (NTRS)
Buning, P.
1994-01-01
PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into
NASA Astrophysics Data System (ADS)
Kostrzewski, Andrew A.; Aye, Tin M.; Kim, Dai Hyun; Esterkin, Vladimir; Savant, Gajendra D.
1998-09-01
Physical Optics Corporation has developed an advanced 3-D virtual reality system for use with simulation tools for training technical and military personnel. This system avoids such drawbacks of other virtual reality (VR) systems as eye fatigue, headaches, and alignment for each viewer, all of which are due to the need to wear special VR goggles. The new system is based on direct viewing of an interactive environment. This innovative holographic multiplexed screen technology makes it unnecessary for the viewer to wear special goggles.
NASA Technical Reports Server (NTRS)
1992-01-01
Ames Research Center research into virtual reality led to the development of the Convolvotron, a high speed digital audio processing system that delivers three-dimensional sound over headphones. It consists of a two-card set designed for use with a personal computer. The Convolvotron's primary application is presentation of 3D audio signals over headphones. Four independent sound sources are filtered with large time-varying filters that compensate for motion. The perceived location of the sound remains constant. Possible applications are in air traffic control towers or airplane cockpits, hearing and perception research and virtual reality development.
NASA Astrophysics Data System (ADS)
Ge, Liang; Sotiropoulos, Fotis
2007-08-01
A novel numerical method is developed that integrates boundary-conforming grids with a sharp interface, immersed boundary methodology. The method is intended for simulating internal flows containing complex, moving immersed boundaries such as those encountered in several cardiovascular applications. The background domain (e.g. the empty aorta) is discretized efficiently with a curvilinear boundary-fitted mesh while the complex moving immersed boundary (say a prosthetic heart valve) is treated with the sharp-interface, hybrid Cartesian/immersed-boundary approach of Gilmanov and Sotiropoulos [A. Gilmanov, F. Sotiropoulos, A hybrid cartesian/immersed boundary method for simulating flows with 3d, geometrically complex, moving bodies, Journal of Computational Physics 207 (2005) 457-492.]. To facilitate the implementation of this novel modeling paradigm in complex flow simulations, an accurate and efficient numerical method is developed for solving the unsteady, incompressible Navier-Stokes equations in generalized curvilinear coordinates. The method employs a novel, fully-curvilinear staggered grid discretization approach, which does not require either the explicit evaluation of the Christoffel symbols or the discretization of all three momentum equations at cell interfaces as done in previous formulations. The equations are integrated in time using an efficient, second-order accurate fractional step methodology coupled with a Jacobian-free, Newton-Krylov solver for the momentum equations and a GMRES solver enhanced with multigrid as preconditioner for the Poisson equation. Several numerical experiments are carried out on fine computational meshes to demonstrate the accuracy and efficiency of the proposed method for standard benchmark problems as well as for unsteady, pulsatile flow through a curved, pipe bend. To demonstrate the ability of the method to simulate flows with complex, moving immersed boundaries we apply it to calculate pulsatile, physiological flow
Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael
2009-01-01
This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308
Simulations of 3D LPI's relevant to IFE using the PIC code OSIRIS
NASA Astrophysics Data System (ADS)
Tsung, F. S.; Mori, W. B.; Winjum, B. J.
2014-10-01
We will study three dimensional effects of laser plasma instabilities, including backward raman scattering, the high frequency hybrid instability, and the two plasmon instability using OSIRIS in 3D Cartesian geometry and cylindrical 2D OSIRIS with azimuthal mode decompositions. With our new capabilities we hope to demonstrate that we are capable of studying single speckle physics relevant to IFE in an efficent manner.
Solution-Adaptive Cartesian Cell Approach for Viscous and Inviscid Flows
NASA Technical Reports Server (NTRS)
Coirier, William J.; Powell, Kenneth G.
1996-01-01
A Cartesian cell-based approach for adaptively refined solutions of the Euler and Navier-Stokes equations in two dimensions is presented. Grids about geometrically complicated bodies are generated automatically, by the recursive subdivision of a single Cartesian cell encompassing the entire flow domain. Where the resulting cells intersect bodies, polygonal cut cells are created using modified polygon-clipping algorithms. The grid is stored in a binary tree data structure that provides a natural means of obtaining cell-to-cell connectivity and of carrying out solution-adaptive mesh refinement. The Euler and Navier-Stokes equations are solved on the resulting grids using a finite volume formulation. The convective terms are upwinded: A linear reconstruction of the primitive variables is performed, providing input states to an approximate Riemann solver for computing the fluxes between neighboring cells. The results of a study comparing the accuracy and positivity of two classes of cell-centered, viscous gradient reconstruction procedures is briefly summarized. Adaptively refined solutions of the Navier-Stokes equations are shown using the more robust of these gradient reconstruction procedures, where the results computed by the Cartesian approach are compared to theory, experiment, and other accepted computational results for a series of low and moderate Reynolds number flows.
Near-Body Grid Adaption for Overset Grids
NASA Technical Reports Server (NTRS)
Buning, Pieter G.; Pulliam, Thomas H.
2016-01-01
A solution adaption capability for curvilinear near-body grids has been implemented in the OVERFLOW overset grid computational fluid dynamics code. The approach follows closely that used for the Cartesian off-body grids, but inserts refined grids in the computational space of original near-body grids. Refined curvilinear grids are generated using parametric cubic interpolation, with one-sided biasing based on curvature and stretching ratio of the original grid. Sensor functions, grid marking, and solution interpolation tasks are implemented in the same fashion as for off-body grids. A goal-oriented procedure, based on largest error first, is included for controlling growth rate and maximum size of the adapted grid system. The adaption process is almost entirely parallelized using MPI, resulting in a capability suitable for viscous, moving body simulations. Two- and three-dimensional examples are presented.
NASA Astrophysics Data System (ADS)
Gil, José J.; San José, Ignacio
2010-11-01
From our previous definition of the indices of polarimetric purity for 3D light beams [J.J. Gil, J.M. Correas, P.A. Melero and C. Ferreira, Monogr. Semin. Mat. G. de Galdeano 31, 161 (2004)], an analysis of their geometric and physical interpretation is presented. It is found that, in agreement with previous results, the first parameter is a measure of the degree of polarization, whereas the second parameter (called the degree of directionality) is a measure of the mean angular aperture of the direction of propagation of the corresponding light beam. This pair of invariant, non-dimensional, indices of polarimetric purity contains complete information about the polarimetric purity of a light beam. The overall degree of polarimetric purity is obtained as a weighted quadratic average of the degree of polarization and the degree of directionality.
Caspi, S.; Helm, M.; Laslett, L.J.
1991-03-30
We have developed an harmonic representation for the three dimensional field components within the windings of accelerator magnets. The form by which the field is presented is suitable for interfacing with other codes that make use of the 3D field components (particle tracking and stability). The field components can be calculated with high precision and reduced cup time at any location (r,{theta},z) inside the magnet bore. The same conductor geometry which is used to simulate line currents is also used in CAD with modifications more readily available. It is our hope that the format used here for magnetic fields can be used not only as a means of delivering fields but also as a way by which beam dynamics can suggest correction to the conductor geometry. 5 refs., 70 figs.
NASA Technical Reports Server (NTRS)
2004-01-01
The Mars Exploration Rover Spirit took this 3-D navigation camera mosaic of the crater called 'Bonneville' after driving approximately 13 meters (42.7 feet) to get a better vantage point. Spirit's current position is close enough to the edge to see the interior of the crater, but high enough and far enough back to get a view of all of the walls. Because scientists and rover controllers are so pleased with this location, they will stay here for at least two more martian days, or sols, to take high resolution panoramic camera images of 'Bonneville' in its entirety. Just above the far crater rim, on the left side, is the rover's heatshield, which is visible as a tiny reflective speck.
Static Aeroelastic Analysis with an Inviscid Cartesian Method
NASA Technical Reports Server (NTRS)
Rodriguez, David L.; Aftosmis, Michael J.; Nemec, Marian; Smith, Stephen C.
2014-01-01
An embedded-boundary Cartesian-mesh flow solver is coupled with a three degree-offreedom structural model to perform static, aeroelastic analysis of complex aircraft geometries. The approach solves the complete system of aero-structural equations using a modular, loosely-coupled strategy which allows the lower-fidelity structural model to deform the highfidelity CFD model. The approach uses an open-source, 3-D discrete-geometry engine to deform a triangulated surface geometry according to the shape predicted by the structural model under the computed aerodynamic loads. The deformation scheme is capable of modeling large deflections and is applicable to the design of modern, very-flexible transport wings. The interface is modular so that aerodynamic or structural analysis methods can be easily swapped or enhanced. This extended abstract includes a brief description of the architecture, along with some preliminary validation of underlying assumptions and early results on a generic 3D transport model. The final paper will present more concrete cases and validation of the approach. Preliminary results demonstrate convergence of the complete aero-structural system and investigate the accuracy of the approximations used in the formulation of the structural model.
NASA Astrophysics Data System (ADS)
Bayrakci, G.; Laigle, M.; Bécel, A.; Hirn, A.; Taymaz, T.; Yolsal-Çevikbilen, S.; Seismarmara Team
2013-09-01
A 3-D tomographic inversion of first arrival times of shot profiles recorded by a dense 2-D OBS network provides an unprecedented constraint on the P-wave velocities heterogeneity of the upper-crustal part of the North Marmara Trough (NMT), over a region of 180 km long by 50 km wide. One of the specific aims of this controlled source tomography is to provide a 3-D initial model for the local earthquake tomography (LET). Hence, in an original way, the controlled source inversion has been performed by using a code dedicated to LET. After several tests to check the results trade-off with the inversion parameters, we build up a 3-D a priori velocity model, in which the sea-bottom topography, the acoustic and the crystalline basements and the Moho interfaces have been considered. The reliability of the obtained features has been checked by checkerboard tests and also by their comparison with the deep-penetration multichannel seismic profiles, and with the wide-angle reflection and refraction modelled profiles. This study provides the first 3-D view of the basement topography along the active North Anatolian fault beneath the Marmara Sea, even beneath the deepest part of three sedimentary basins of NMT. Clear basement depressions reaching down 6 km depth below the sea level (bsl) have been found beneath these basins. The North Imrali Basin located on the southern continental shelf is observed with a similar sedimentary thickness as its northern neighbours. Between Central and Çinarcik basins, the Central High rises up to 3 km depth below (bsl). Its crest position is offset by 10 km northwestward relatively to the bathymetric crest. On the contrary, Tekirdağ and Central basins appear linked, forming a 60-km-long basement depression. Beneath the bathymetric relief of Western High low velocities are observed down to 6 km depth (bsl) and no basement high have been found. The obtained 3-D Vp heterogeneity model allows the consideration of the 3-D supracrustal heterogeneity
PLOT3D- DRAWING THREE DIMENSIONAL SURFACES
NASA Technical Reports Server (NTRS)
Canright, R. B.
1994-01-01
PLOT3D is a package of programs to draw three-dimensional surfaces of the form z = f(x,y). The function f and the boundary values for x and y are the input to PLOT3D. The surface thus defined may be drawn after arbitrary rotations. However, it is designed to draw only functions in rectangular coordinates expressed explicitly in the above form. It cannot, for example, draw a sphere. Output is by off-line incremental plotter or online microfilm recorder. This package, unlike other packages, will plot any function of the form z = f(x,y) and portrays continuous and bounded functions of two independent variables. With curve fitting; however, it can draw experimental data and pictures which cannot be expressed in the above form. The method used is division into a uniform rectangular grid of the given x and y ranges. The values of the supplied function at the grid points (x, y) are calculated and stored; this defines the surface. The surface is portrayed by connecting successive (y,z) points with straight-line segments for each x value on the grid and, in turn, connecting successive (x,z) points for each fixed y value on the grid. These lines are then projected by parallel projection onto the fixed yz-plane for plotting. This program has been implemented on the IBM 360/67 with on-line CDC microfilm recorder.
High Rayleigh Number 3-D Spherical Mantle Convection with Radial Basis Functions
NASA Astrophysics Data System (ADS)
Flyer, N.; Yuen (3), G. Wright, D.
2009-04-01
In the last quarter of a century many numerical methods, such as finite-differences, finite-volume, their yin-yang variants, finite-elements and pseudo-spectral methods have been used to study the problem of 3-D spherical convection. All have their respective strengths but also serious weaknesses, such as low-order and can involve high algorithmic complexity, as in triangular elements. Spectrally accurate methods do not practically allow for local mesh refinement and often involve cumbersome algebra. We have recently introduced a new grid/mesh-free approach, using radial basis functions ( RBFs) . It has the advantage of being spectrally accurate for arbitrary node layouts in multi-dimensions with extreme algorithmic simplicity, and allows naturally node-refinement. One virtue of the RBF scheme is the ability to use a simple Cartesian geometry while implementing the required boundary conditions for the temperature, velocity and stresses on a spherical surface of both the outer( planetary surface ) and inner shell ( core-mantle boundary ). The velocity and stress components are expressed in terms of the scalar potential approach and the other remaining variable is the perturbed temperature field. We have studied the problem from the weakly nonlinear to a moderately nonlinear regime involving a Rayleigh number, about 1000 times super-critical. Both purely basal and partially internal -heating cases have been considered
High Rayleigh Number 3-D Spherical Mantle Convection with Radial Basis Functions
NASA Astrophysics Data System (ADS)
Flyer, N.; Wright, G.; Yuen, D. A.
2009-04-01
In the last quarter of a century many numerical methods, such as finite-differences, finite-volume, their yin-yang variants, finite-elements and pseudo-spectral methods have been used to study the problem of 3-D spherical convection. All have their respective strengths but also serious weaknesses, such as low-order and can involve high algorithmic complexity, as in triangular elements. Spectrally accurate methods do not practically allow for local mesh refinement and often involve cumbersome algebra. We have recently introduced a new grid/mesh-free approach, using radial basis functions (RBFs). It has the advantage of being spectrally accurate for arbitrary node layouts in multi-dimensions with extreme algorithmic simplicity, and allows naturally node-refinement. One virtue of the RBF scheme is the ability to use a simple Cartesian geometry while implementing the required boundary conditions for the temperature, velocity and stresses on a spherical surface of both the outer(planetary surface) and inner shell (core-mantle boundary). The velocity and stress components are expressed in terms of the scalar potential approach and the other remaining variable is the perturbed temperature field. We have studied the problem from the weakly onlinear to a moderately nonlinear regime involving a Rayleigh number, about 1000 times super-critical. Both purely basal and partially internal-heating cases have been considered.
3D optical measuring technologies and systems
NASA Astrophysics Data System (ADS)
Chugui, Yuri V.
2005-02-01
The results of the R & D activity of TDI SIE SB RAS in the field of the 3D optical measuring technologies and systems for noncontact 3D optical dimensional inspection applied to atomic and railway industry safety problems are presented. This activity includes investigations of diffraction phenomena on some 3D objects, using the original constructive calculation method. The efficient algorithms for precise determining the transverse and longitudinal sizes of 3D objects of constant thickness by diffraction method, peculiarities on formation of the shadow and images of the typical elements of the extended objects were suggested. Ensuring the safety of nuclear reactors and running trains as well as their high exploitation reliability requires a 100% noncontact precise inspection of geometrical parameters of their components. To solve this problem we have developed methods and produced the technical vision measuring systems LMM, CONTROL, PROFIL, and technologies for noncontact 3D dimensional inspection of grid spacers and fuel elements for the nuclear reactor VVER-1000 and VVER-440, as well as automatic laser diagnostic COMPLEX for noncontact inspection of geometric parameters of running freight car wheel pairs. The performances of these systems and the results of industrial testing are presented and discussed. The created devices are in pilot operation at Atomic and Railway Companies.
NASA Astrophysics Data System (ADS)
Huang, Guo-Jiao; Bai, Chao-Ying; Greenhalgh, Stewart
2013-09-01
The traditional grid/cell-based wavefront expansion algorithms, such as the shortest path algorithm, can only find the first arrivals or multiply reflected (or mode converted) waves transmitted from subsurface interfaces, but cannot calculate the other later reflections/conversions having a minimax time path. In order to overcome the above limitations, we introduce the concept of a stationary minimax time path of Fermat's Principle into the multistage irregular shortest path method. Here we extend it from Cartesian coordinates for a flat earth model to global ray tracing of multiple phases in a 3-D complex spherical earth model. The ray tracing results for 49 different kinds of crustal, mantle and core phases show that the maximum absolute traveltime error is less than 0.12 s and the average absolute traveltime error is within 0.09 s when compared with the AK135 theoretical traveltime tables for a 1-D reference model. Numerical tests in terms of computational accuracy and CPU time consumption indicate that the new scheme is an accurate, efficient and a practical way to perform 3-D multiphase arrival tracking in regional or global traveltime tomography.
Visualization of 3D Geological Models on Google Earth
NASA Astrophysics Data System (ADS)
Choi, Y.; Um, J.; Park, M.
2013-05-01
Google Earth combines satellite imagery, aerial photography, thematic maps and various data sets to make a three-dimensional (3D) interactive image of the world. Currently, Google Earth is a popular visualization tool in a variety of fields and plays an increasingly important role not only for private users in daily life, but also for scientists, practitioners, policymakers and stakeholders in research and application. In this study, a method to visualize 3D geological models on Google Earth is presented. COLLAborative Design Activity (COLLADA, an open standard XML schema for establishing interactive 3D applications) was used to represent different 3D geological models such as borehole, fence section, surface-based 3D volume and 3D grid by triangle meshes (a set of triangles connected by their common edges or corners). In addition, we designed Keyhole Markup Language (KML, the XML-based scripting language of Google Earth) codes to import the COLLADA files into the 3D render window of Google Earth. The method was applied to the Grosmont formation in Alberta, Canada. The application showed that the combination of COLLADA and KML enables Google Earth to effectively visualize 3D geological structures and properties.; Visualization of the (a) boreholes, (b) fence sections, (c) 3D volume model and (d) 3D grid model of Grossmont formation on Google Earth
Transonic airfoil design using Cartesian coordinates
NASA Technical Reports Server (NTRS)
Carlson, L. A.
1976-01-01
A numerical technique for designing transonic airfoils having a prescribed pressure distribution (the inverse problem) is presented. The method employs the basic features of Jameson's iterative solution for the full potential equation, except that inverse boundary conditions and Cartesian coordinates are used. The method is a direct-inverse approach that controls trailing-edge closure. Examples show the application of the method to design aft-cambered and other airfoils specifically for transonic flight.
Visualization of 3D Geological Data using COLLADA and KML
NASA Astrophysics Data System (ADS)
Choi, Yosoon; Um, Jeong-Gi; Park, Myong-Ho
2013-04-01
This study presents a method to visualize 3D geological data using COLLAborative Design Activity(COLLADA, an open standard XML schema for establishing interactive 3D applications) and Keyhole Markup Language(KML, the XML-based scripting language of Google Earth).We used COLLADA files to represent different 3D geological data such as borehole, fence section, surface-based 3D volume and 3D grid by triangle meshes(a set of triangles connected by their common edges or corners). The COLLADA files were imported into the 3D render window of Google Earth using KML codes. An application to the Grosmont formation in Alberta, Canada showed that the combination of COLLADA and KML enables Google Earth to visualize 3D geological structures and properties.
3D Elastic Wavefield Tomography
NASA Astrophysics Data System (ADS)
Guasch, L.; Warner, M.; Stekl, I.; Umpleby, A.; Shah, N.
2010-12-01
Wavefield tomography, or waveform inversion, aims to extract the maximum information from seismic data by matching trace by trace the response of the solid earth to seismic waves using numerical modelling tools. Its first formulation dates from the early 80's, when Albert Tarantola developed a solid theoretical basis that is still used today with little change. Due to computational limitations, the application of the method to 3D problems has been unaffordable until a few years ago, and then only under the acoustic approximation. Although acoustic wavefield tomography is widely used, a complete solution of the seismic inversion problem requires that we account properly for the physics of wave propagation, and so must include elastic effects. We have developed a 3D tomographic wavefield inversion code that incorporates the full elastic wave equation. The bottle neck of the different implementations is the forward modelling algorithm that generates the synthetic data to be compared with the field seismograms as well as the backpropagation of the residuals needed to form the direction update of the model parameters. Furthermore, one or two extra modelling runs are needed in order to calculate the step-length. Our approach uses a FD scheme explicit time-stepping by finite differences that are 4th order in space and 2nd order in time, which is a 3D version of the one developed by Jean Virieux in 1986. We chose the time domain because an explicit time scheme is much less demanding in terms of memory than its frequency domain analogue, although the discussion of wich domain is more efficient still remains open. We calculate the parameter gradients for Vp and Vs by correlating the normal and shear stress wavefields respectively. A straightforward application would lead to the storage of the wavefield at all grid points at each time-step. We tackled this problem using two different approaches. The first one makes better use of resources for small models of dimension equal
NASA Technical Reports Server (NTRS)
1997-01-01
Many prominent rocks near the Sagan Memorial Station are featured in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. Wedge is at lower left; Shark, Half-Dome, and Pumpkin are at center. Flat Top, about four inches high, is at lower right. The horizon in the distance is one to two kilometers away.
Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.
Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right
NASA Technical Reports Server (NTRS)
2004-01-01
This 3-D, microscopic imager mosaic of a target area on a rock called 'Diamond Jenness' was taken after NASA's Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time.
Opportunity has bored nearly a dozen holes into the inner walls of 'Endurance Crater.' On sols 177 and 178 (July 23 and July 24, 2004), the rover worked double-duty on Diamond Jenness. Surface debris and the bumpy shape of the rock resulted in a shallow and irregular hole, only about 2 millimeters (0.08 inch) deep. The final depth was not enough to remove all the bumps and leave a neat hole with a smooth floor. This extremely shallow depression was then examined by the rover's alpha particle X-ray spectrometer.
On Sol 178, Opportunity's 'robotic rodent' dined on Diamond Jenness once again, grinding almost an additional 5 millimeters (about 0.2 inch). The rover then applied its Moessbauer spectrometer to the deepened hole. This double dose of Diamond Jenness enabled the science team to examine the rock at varying layers. Results from those grindings are currently being analyzed.
The image mosaic is about 6 centimeters (2.4 inches) across.
A 3-d modular gripper design tool
Brown, R.G.; Brost, R.C.
1997-02-01
Modular fixturing kits are sets of components used for flexible, rapid construction of fixtures. A modular vise is a parallel-jaw vise, each jaw of which is a modular fixture plate with a regular grid of precisely positioned holes. To fixture a part, one places pins in some of the holes so that when the vise is closed, the part is reliably located and completely constrained. The modular vise concept can be adapted easily to the design of modular parallel-jaw grippers for robots. By attaching a grid-plate to each jaw of a parallel-jaw gripper, one gains the ability to easily construct high-quality grasps for a wide variety of parts from a standard set of hardware. Wallack and Canny developed an algorithm for planning planar grasp configurations for the modular vise. In this paper, the authors expand this work to produce a 3-d fixture/gripper design tool. They describe several analyses they have added to the planar algorithm, including a 3-d grasp quality metric based on force information, 3-d geometric loading analysis, and inter-gripper interference analysis. Finally, the authors describe two applications of their code. One of these is an internal application at Sandia, while the other shows a potential use of the code for designing part of an agile assembly line.
DRACO development for 3D simulations
NASA Astrophysics Data System (ADS)
Fatenejad, Milad; Moses, Gregory
2006-10-01
The DRACO (r-z) lagrangian radiation-hydrodynamics laser fusion simulation code is being extended to model 3D hydrodynamics in (x-y-z) coordinates with hexahedral cells on a structured grid. The equation of motion is solved with a lagrangian update with optional rezoning. The fluid equations are solved using an explicit scheme based on (Schulz, 1964) while the SALE-3D algorithm (Amsden, 1981) is used as a template for computing cell volumes and other quantities. A second order rezoner has been added which uses linear interpolation of the underlying continuous functions to preserve accuracy (Van Leer, 1976). Artificial restoring force terms and smoothing algorithms are used to avoid grid distortion in high aspect ratio cells. These include alternate node couplers along with a rotational restoring force based on the Tensor Code (Maenchen, 1964). Electron and ion thermal conduction is modeled using an extension of Kershaw's method (Kershaw, 1981) to 3D geometry. Test problem simulations will be presented to demonstrate the applicability of this new version of DRACO to the study of fluid instabilities in three dimensions.
NASA Technical Reports Server (NTRS)
Bidwell, Colin S.; Pinella, David; Garrison, Peter
1999-01-01
Collection efficiency and ice accretion calculations were made for a commercial transport using the NASA Lewis LEWICE3D ice accretion code, the ICEGRID3D grid code and the CMARC panel code. All of the calculations were made on a Windows 95 based personal computer. The ice accretion calculations were made for the nose, wing, horizontal tail and vertical tail surfaces. Ice shapes typifying those of a 30 minute hold were generated. Collection efficiencies were also generated for the entire aircraft using the newly developed unstructured collection efficiency method. The calculations highlight the flexibility and cost effectiveness of the LEWICE3D, ICEGRID3D, CMARC combination.
Controlled 3D rotation of biological cells using optical multiple-force clamps
Tanaka, Yoshio; Wakida, Shin-ich
2014-01-01
Controlled three-dimensional (3D) rotation of arbitrarily shaped objects in the observation space of optical microscopes is essential for realizing tomographic microscope imaging and offers great flexibility as a noncontact micromanipulation tool for biomedical applications. Herein, we present 3D rotational control of inhomogeneous biological samples using 3D optical multiple-force clamps based on time-shared scanning with a fast focus-tunable lens. For inhomogeneous samples with shape and optical anisotropy, we choose diatoms and their fragments, and demonstrate interactive and controlled 3D rotation about arbitrary axes in 3D Cartesian coordinates. We also outline the hardware setup and 3D rotation method for our demonstrations. PMID:25071968
NASA Astrophysics Data System (ADS)
Rautenhaus, M.; Kern, M.; Schäfler, A.; Westermann, R.
2015-02-01
We present Met.3D, a new open-source tool for the interactive 3-D visualization of numerical ensemble weather predictions. The tool has been developed to support weather forecasting during aircraft-based atmospheric field campaigns, however, is applicable to further forecasting, research and teaching activities. Our work approaches challenging topics related to the visual analysis of numerical atmospheric model output - 3-D visualization, ensemble visualization, and how both can be used in a meaningful way suited to weather forecasting. Met.3D builds a bridge from proven 2-D visualization methods commonly used in meteorology to 3-D visualization by combining both visualization types in a 3-D context. We address the issue of spatial perception in the 3-D view and present approaches to using the ensemble to allow the user to assess forecast uncertainty. Interactivity is key to our approach. Met.3D uses modern graphics technology to achieve interactive visualization on standard consumer hardware. The tool supports forecast data from the European Centre for Medium Range Weather Forecasts and can operate directly on ECMWF hybrid sigma-pressure level grids. We describe the employed visualization algorithms, and analyse the impact of the ECMWF grid topology on computing 3-D ensemble statistical quantitites. Our techniques are demonstrated with examples from the T-NAWDEX-Falcon 2012 campaign.
Humphries, Benjamin; Zhang, Hansen; Sheng, Jiayi; Landaverde, Raphael; Herbordt, Martin C.
2015-01-01
The 3D FFT is critical in many physical simulations and image processing applications. On FPGAs, however, the 3D FFT was thought to be inefficient relative to other methods such as convolution-based implementations of multi-grid. We find the opposite: a simple design, operating at a conservative frequency, takes 4μs for 163, 21μs for 323, and 215μs for 643 single precision data points. The first two of these compare favorably with the 25μs and 29μs obtained running on a current Nvidia GPU. Some broader significance is that this is a critical piece in implementing a large scale FPGA-based MD engine: even a single FPGA is capable of keeping the FFT off of the critical path for a large fraction of possible MD simulations. PMID:26594666
Explicitly computing geodetic coordinates from Cartesian coordinates
NASA Astrophysics Data System (ADS)
Zeng, Huaien
2013-04-01
This paper presents a new form of quartic equation based on Lagrange's extremum law and a Groebner basis under the constraint that the geodetic height is the shortest distance between a given point and the reference ellipsoid. A very explicit and concise formulae of the quartic equation by Ferrari's line is found, which avoids the need of a good starting guess for iterative methods. A new explicit algorithm is then proposed to compute geodetic coordinates from Cartesian coordinates. The convergence region of the algorithm is investigated and the corresponding correct solution is given. Lastly, the algorithm is validated with numerical experiments.
Inflow-outflow boundary conditions along arbitrary directions in Cartesian lake models
NASA Astrophysics Data System (ADS)
Ramón, C. L.; Cortés, A.; Rueda, F. J.
2015-01-01
Specifying point sources and sinks of water near boundaries is presented as a flexible approach to prescribe inflows and outflows along arbitrary directions in Cartesian grid lake models. Implementing the approach involves a straightforward modification of the governing equations, to include a first order source term in the continuity and momentum equations. The approach is implemented in a Cartesian grid model and applied to several test cases. First, the flow along a straight flat bottom channel with its axis forming different angles with the grid directions is simulated and the results are compared against well-known analytical solutions. Point-sources are then used to simulate unconfined inflows into a reservoir (a small river entering a reservoir in a jet-like manner), which occur at an angle with the grid directions. The model results are assessed in terms of a mixing ratio between lake and river water, evaluated at a cross section downstream of the inflow boundary. Those results are particularly sensitive to changes in the inflow angle. It is argued that differences in mixing rates near the inflow sections could affect the fate of river-borne substances in model simulations.
Multilevel Error Estimation and Adaptive h-Refinement for Cartesian Meshes with Embedded Boundaries
NASA Technical Reports Server (NTRS)
Aftosmis, M. J.; Berger, M. J.; Kwak, Dochan (Technical Monitor)
2002-01-01
This paper presents the development of a mesh adaptation module for a multilevel Cartesian solver. While the module allows mesh refinement to be driven by a variety of different refinement parameters, a central feature in its design is the incorporation of a multilevel error estimator based upon direct estimates of the local truncation error using tau-extrapolation. This error indicator exploits the fact that in regions of uniform Cartesian mesh, the spatial operator is exactly the same on the fine and coarse grids, and local truncation error estimates can be constructed by evaluating the residual on the coarse grid of the restricted solution from the fine grid. A new strategy for adaptive h-refinement is also developed to prevent errors in smooth regions of the flow from being masked by shocks and other discontinuous features. For certain classes of error histograms, this strategy is optimal for achieving equidistribution of the refinement parameters on hierarchical meshes, and therefore ensures grid converged solutions will be achieved for appropriately chosen refinement parameters. The robustness and accuracy of the adaptation module is demonstrated using both simple model problems and complex three dimensional examples using meshes with from 10(exp 6), to 10(exp 7) cells.
Delft3D-FLOW on PRACE infrastructures for real life hydrodynamic applications.
NASA Astrophysics Data System (ADS)
Donners, John; Genseberger, Menno; Jagers, Bert; de Goede, Erik; Mourits, Adri
2013-04-01
PRACE, the Partnership for Advanced Computing in Europe, offers access to the largest high-performance computing systems in Europe. PRACE invites and helps industry to increase their innovative potential through the use of the PRACE infrastructure. This poster describes different efforts to assist Deltares with porting the open-source simulation software Delft3D-FLOW to PRACE infrastructures. Analysis of the performance on these infrastructures has been done for real life flow applications. Delft3D-FLOW is a 2D and 3D shallow water solver which calculates non-steady flow and transport phenomena resulting from tidal and meteorological forcing on a curvilinear, boundary fitted grid in Cartesian or spherical coordinates. It also includes a module which sediment transport (both suspended and bed total load) and morphological changes for an arbitrary number of cohesive and non-cohesive fractions. As Delft3D-FLOW has been developed over several decades, with a variety of functionality and over 350k lines of source code, porting to PRACE infrastructures needs some effort. At the moment Delft3D-FLOW uses MPI with domain decomposition in one direction as its parallellisation approach. Because it is hard to identify scaling issues if one immediately starts with a complex case with many features enabled, different cases with increasing complexity have been used to investigate scaling of this parallellisation approach on several PRACE platforms. As a base reference case we started with a schematic high-resolution 2D hydrodynamic model of the river Waal that turned out to be surprisingly well-suited to the highly-parallel PRACE machines. Although Delft3D-FLOW employs a sophisticated build system, several modifications were required to port it to most PRACE systems due to the use of specific, highly-tuned compilers and MPI-libraries. After this we moved to a 3D hydrodynamic model of Rotterdam harbour that includes sections of the rivers Rhine and Meuse and a part of the North
Structured background grids for generation of unstructured grids by advancing front method
NASA Technical Reports Server (NTRS)
Pirzadeh, Shahyar
1991-01-01
A new method of background grid construction is introduced for generation of unstructured tetrahedral grids using the advancing-front technique. Unlike the conventional triangular/tetrahedral background grids which are difficult to construct and usually inadequate in performance, the new method exploits the simplicity of uniform Cartesian meshes and provides grids of better quality. The approach is analogous to solving a steady-state heat conduction problem with discrete heat sources. The spacing parameters of grid points are distributed over the nodes of a Cartesian background grid by interpolating from a few prescribed sources and solving a Poisson equation. To increase the control over the grid point distribution, a directional clustering approach is used. The new method is convenient to use and provides better grid quality and flexibility. Sample results are presented to demonstrate the power of the method.
Discretization formulas for unstructured grids
NASA Technical Reports Server (NTRS)
Baumeister, Kenneth J.
1988-01-01
The Galerkin weighted residual technique using linear triangular weight functions is employed to develop finite difference formula in cartesian coordinates for the Laplacian operator, first derivative operators and the function for unstructured triangular grids. The weighted residual coefficients associated with the weak formulation of the Laplacian operator are shown to agree with the Taylor series approach on a global average. In addition, a simple algorithm is presented to determine the Voronoi (finite difference) area of an unstructured grid.
TEMPEST. Transient 3-D Thermal-Hydraulic
Eyler, L.L.
1992-01-31
TEMPEST is a transient, three-dimensional, hydrothermal program that is designed to analyze a range of coupled fluid dynamic and heat transfer systems of particular interest to the Fast Breeder Reactor (FBR) thermal-hydraulic design community. The full three-dimensional, time-dependent equations of motion, continuity, and heat transport are solved for either laminar or turbulent fluid flow, including heat diffusion and generation in both solid and liquid materials. The equations governing mass, momentum, and energy conservation for incompressible flows and small density variations (Boussinesq approximation) are solved using finite-difference techniques. Analyses may be conducted in either cylindrical or Cartesian coordinate systems. Turbulence is treated using a two-equation model. Two auxiliary plotting programs, SEQUEL and MANPLOT, for use with TEMPEST output are included. SEQUEL may be operated in batch or interactive mode; it generates data required for vector plots, contour plots of scalar quantities, line plots, grid and boundary plots, and time-history plots. MANPLOT reads the SEQUEL-generated data and creates the hardcopy plots. TEMPEST can be a valuable hydrothermal design analysis tool in areas outside the intended FBR thermal-hydraulic design community.
NASA Astrophysics Data System (ADS)
Mediavilla, Evencio; Arribas, Santiago; Roth, Martin; Cepa-Nogué, Jordi; Sánchez, Francisco
2011-09-01
Preface; Acknowledgements; 1. Introductory review and technical approaches Martin M. Roth; 2. Observational procedures and data reduction James E. H. Turner; 3. 3D Spectroscopy instrumentation M. A. Bershady; 4. Analysis of 3D data Pierre Ferruit; 5. Science motivation for IFS and galactic studies F. Eisenhauer; 6. Extragalactic studies and future IFS science Luis Colina; 7. Tutorials: how to handle 3D spectroscopy data Sebastian F. Sánchez, Begona García-Lorenzo and Arlette Pécontal-Rousset.
Static Aeroelastic Analysis with an Inviscid Cartesian Method
NASA Technical Reports Server (NTRS)
Rodriguez, David L.; Aftosmis, Michael J.; Nemec, Marian; Smith, Stephen C.
2014-01-01
An embedded-boundary, Cartesian-mesh flow solver is coupled with a three degree-of-freedom structural model to perform static, aeroelastic analysis of complex aircraft geometries. The approach solves a nonlinear, aerostructural system of equations using a loosely-coupled strategy. An open-source, 3-D discrete-geometry engine is utilized to deform a triangulated surface geometry according to the shape predicted by the structural model under the computed aerodynamic loads. The deformation scheme is capable of modeling large deflections and is applicable to the design of modern, very-flexible transport wings. The coupling interface is modular so that aerodynamic or structural analysis methods can be easily swapped or enhanced. After verifying the structural model with comparisons to Euler beam theory, two applications of the analysis method are presented as validation. The first is a relatively stiff, transport wing model which was a subject of a recent workshop on aeroelasticity. The second is a very flexible model recently tested in a low speed wind tunnel. Both cases show that the aeroelastic analysis method produces results in excellent agreement with experimental data.
3D Elevation Program—Virtual USA in 3D
Lukas, Vicki; Stoker, J.M.
2016-01-01
The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.
The Galicia 3D experiment: an Introduction.
NASA Astrophysics Data System (ADS)
Reston, Timothy; Martinez Loriente, Sara; Holroyd, Luke; Merry, Tobias; Sawyer, Dale; Morgan, Julia; Jordan, Brian; Tesi Sanjurjo, Mari; Alexanian, Ara; Shillington, Donna; Gibson, James; Minshull, Tim; Karplus, Marianne; Bayracki, Gaye; Davy, Richard; Klaeschen, Dirk; Papenberg, Cord; Ranero, Cesar; Perez-Gussinye, Marta; Martinez, Miguel
2014-05-01
In June and July 2013, scientists from 8 institutions took part in the Galicia 3D seismic experiment, the first ever crustal -scale academic 3D MCS survey over a rifted margin. The aim was to determine the 3D structure of a critical portion of the west Galicia rifted margin. At this margin, well-defined tilted fault blocks, bound by west-dipping faults and capped by synrift sediments are underlain by a bright reflection, undulating on time sections, termed the S reflector and thought to represent a major detachment fault of some kind. Moving west, the crust thins to zero thickness and mantle is unroofed, as evidence by the "Peridotite Ridge" first reported at this margin, but since observed at many other magma-poor margins. By imaging such a margin in detail, the experiment aimed to resolve the processes controlling crustal thinning and mantle unroofing at a type example magma poor margin. The experiment set out to collect several key datasets: a 3D seismic reflection volume measuring ~20x64km and extending down to ~14s TWT, a 3D ocean bottom seismometer dataset suitable for full wavefield inversion (the recording of the complete 3D seismic shots by 70 ocean bottom instruments), the "mirror imaging" of the crust using the same grid of OBS, a single 2D combined reflection/refraction profile extending to the west to determine the transition from unroofed mantle to true oceanic crust, and the seismic imaging of the water column, calibrated by regular deployment of XBTs to measure the temperature structure of the water column. We collected 1280 km2 of seismic reflection data, consisting of 136533 shots recorded on 1920 channels, producing 260 million seismic traces, each ~ 14s long. This adds up to ~ 8 terabytes of data, representing, we believe, the largest ever academic 3D MCS survey in terms of both the area covered and the volume of data. The OBS deployment was the largest ever within an academic 3D survey.
VISRAD, 3-D Target Design and Radiation Simulation Code
NASA Astrophysics Data System (ADS)
Li, Yingjie; Macfarlane, Joseph; Golovkin, Igor
2015-11-01
The 3-D view factor code VISRAD is widely used in designing HEDP experiments at major laser and pulsed-power facilities, including NIF, OMEGA, OMEGA-EP, ORION, LMJ, Z, and PLX. It simulates target designs by generating a 3-D grid of surface elements, utilizing a variety of 3-D primitives and surface removal algorithms, and can be used to compute the radiation flux throughout the surface element grid by computing element-to-element view factors and solving power balance equations. Target set-up and beam pointing are facilitated by allowing users to specify positions and angular orientations using a variety of coordinates systems (e.g., that of any laser beam, target component, or diagnostic port). Analytic modeling for laser beam spatial profiles for OMEGA DPPs and NIF CPPs is used to compute laser intensity profiles throughout the grid of surface elements. We will discuss recent improvements to the software package and plans for future developments.
Parallel adaptive Cartesian upwind methods for shock-driven multiphysics simulation
Deiterding, Ralf
2011-01-01
The multiphysics fluid-structure interaction simulation of shock-loaded thin-walled structures requires the dynamic coupling of a shock-capturing flow solver to a solid mechanics solver for large deformations. By combining a Cartesian embedded boundary approach with dynamic mesh adaptation a generic software framework for such flow solvers has been constructed that allows easy exchange of the specific hydrodynamic finite volume upwind scheme and coupling to various explicit finite element solid dynamics solvers. The paper gives an overview of the computational approach and presents first simulations that couple the software to the general purpose solid dynamics code DYNA3D.
NASA Astrophysics Data System (ADS)
Atkinson, C.; Buchmann, N. A.; Soria, J.
2013-11-01
Three-dimensional (3D) volumetric velocity measurement techniques, such as tomographic or holographic particle image velocimetry (PIV), rely upon the computationally intensive formation, storage and localized interrogation of multiple 3D particle intensity fields. Calculation of a single velocity field typically requires the extraction of particle intensities into tens of thousands of 3D sub-volumes or discrete particle clusters, the processing of which can significantly affect the performance of 3D cross-correlation based PIV and 3D particle tracking velocimetry (PTV). In this paper, a series of popular and customized volumetric data formats are presented and investigated using synthetic particle volumes and experimental data arising from tomographic PIV measurements of a turbulent boundary layer. Results show that the use of a sub-grid ordered non-zero intensity format with a sub-grid size of 16 × 16 × 16 points provides the best performance for cross-correlation based PIV analysis, while a particle clustered non-zero intensity format provides the best format for PTV applications. In practical tomographic PIV measurements the sub-grid ordered non-zero intensity format offered a 29% improvement in reconstruction times, while providing a 93% reduction in volume data requirements and a 28% overall improvement in cross-correlation based velocity analysis and validation times.
CFL3D User's Manual (Version 5.0)
NASA Technical Reports Server (NTRS)
Krist, Sherrie L.; Biedron, Robert T.; Rumsey, Christopher L.
1998-01-01
This document is the User's Manual for the CFL3D computer code, a thin-layer Reynolds-averaged Navier-Stokes flow solver for structured multiple-zone grids. Descriptions of the code's input parameters, non-dimensionalizations, file formats, boundary conditions, and equations are included. Sample 2-D and 3-D test cases are also described, and many helpful hints for using the code are provided.
Capacitance extraction from complex 3D interconnect structures
Cartwright, D.; Csanak, G.; George, D.; Walker, R.; Kuprat, A.; Dengi, A.; Grobman, W.
1999-06-01
A new tool has been developed for calculating the capacitance matrix for complex 3D interconnect structures involving multiple layers of irregularly shaped interconnect, imbedded in different dielectric materials. This method utilizes a new 3D adaptive unstructured grid capability, and a linear finite element algorithm. The capacitance is determined from the minimum in the total system energy as the nodes are varied to minimize the error in the electric field in the dielectric(s).
MT3D was first developed by Chunmiao Zheng in 1990 at S.S. Papadopulos & Associates, Inc. with partial support from the U.S. Environmental Protection Agency (USEPA). Starting in 1990, MT3D was released as a pubic domain code from the USEPA. Commercial versions with enhanced capab...
NASA Technical Reports Server (NTRS)
1977-01-01
A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.
2013-10-01
Earth3D is a computer code designed to allow fast calculation of seismic rays and travel times through a 3D model of the Earth. LLNL is using this for earthquake location and global tomography efforts and such codes are of great interest to the Earth Science community.
[3-D ultrasound in gastroenterology].
Zoller, W G; Liess, H
1994-06-01
Three-dimensional (3D) sonography represents a development of noninvasive diagnostic imaging by real-time two-dimensional (2D) sonography. The use of transparent rotating scans, comparable to a block of glass, generates a 3D effect. The objective of the present study was to optimate 3D presentation of abdominal findings. Additional investigations were made with a new volumetric program to determine the volume of selected findings of the liver. The results were compared with the estimated volumes of 2D sonography and 2D computer tomography (CT). For the processing of 3D images, typical parameter constellations were found for the different findings, which facilitated processing of 3D images. In more than 75% of the cases examined we found an optimal 3D presentation of sonographic findings with respect to the evaluation criteria developed by us for the 3D imaging of processed data. Great differences were found for the estimated volumes of the findings of the liver concerning the three different techniques applied. 3D ultrasound represents a valuable method to judge morphological appearance in abdominal findings. The possibility of volumetric measurements enlarges its potential diagnostic significance. Further clinical investigations are necessary to find out if definite differentiation between benign and malign findings is possible. PMID:7919882
2013-10-30
This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.
None
2014-02-26
This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.
NASA Astrophysics Data System (ADS)
Walsh, J. R.
2004-02-01
The Euro3D RTN is an EU funded Research Training Network to foster the exploitation of 3D spectroscopy in Europe. 3D spectroscopy is a general term for spectroscopy of an area of the sky and derives its name from its two spatial + one spectral dimensions. There are an increasing number of instruments which use integral field devices to achieve spectroscopy of an area of the sky, either using lens arrays, optical fibres or image slicers, to pack spectra of multiple pixels on the sky (``spaxels'') onto a 2D detector. On account of the large volume of data and the special methods required to reduce and analyse 3D data, there are only a few centres of expertise and these are mostly involved with instrument developments. There is a perceived lack of expertise in 3D spectroscopy spread though the astronomical community and its use in the armoury of the observational astronomer is viewed as being highly specialised. For precisely this reason the Euro3D RTN was proposed to train young researchers in this area and develop user tools to widen the experience with this particular type of data in Europe. The Euro3D RTN is coordinated by Martin M. Roth (Astrophysikalisches Institut Potsdam) and has been running since July 2002. The first Euro3D science conference was held in Cambridge, UK from 22 to 23 May 2003. The main emphasis of the conference was, in keeping with the RTN, to expose the work of the young post-docs who are funded by the RTN. In addition the team members from the eleven European institutes involved in Euro3D also presented instrumental and observational developments. The conference was organized by Andy Bunker and held at the Institute of Astronomy. There were over thirty participants and 26 talks covered the whole range of application of 3D techniques. The science ranged from Galactic planetary nebulae and globular clusters to kinematics of nearby galaxies out to objects at high redshift. Several talks were devoted to reporting recent observations with newly
Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A
2015-12-01
3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery. PMID:26657435
On automating domain connectivity for overset grids
NASA Technical Reports Server (NTRS)
Chiu, Ing-Tsau; Meakin, Robert L.
1995-01-01
An alternative method for domain connectivity among systems of overset grids is presented. Reference uniform Cartesian systems of points are used to achieve highly efficient domain connectivity, and form the basis for a future fully automated system. The Cartesian systems are used to approximate body surfaces and to map the computational space of component grids. By exploiting the characteristics of Cartesian systems, Chimera type hole-cutting and identification of donor elements for intergrid boundary points can be carried out very efficiently. The method is tested for a range of geometrically complex multiple-body overset grid systems. A dynamic hole expansion/contraction algorithm is also implemented to obtain optimum domain connectivity; however, it is tested only for geometry of generic shapes.
Stanton, M M; Samitier, J; Sánchez, S
2015-08-01
Three-dimensional (3D) bioprinting has recently emerged as an extension of 3D material printing, by using biocompatible or cellular components to build structures in an additive, layer-by-layer methodology for encapsulation and culture of cells. These 3D systems allow for cell culture in a suspension for formation of highly organized tissue or controlled spatial orientation of cell environments. The in vitro 3D cellular environments simulate the complexity of an in vivo environment and natural extracellular matrices (ECM). This paper will focus on bioprinting utilizing hydrogels as 3D scaffolds. Hydrogels are advantageous for cell culture as they are highly permeable to cell culture media, nutrients, and waste products generated during metabolic cell processes. They have the ability to be fabricated in customized shapes with various material properties with dimensions at the micron scale. 3D hydrogels are a reliable method for biocompatible 3D printing and have applications in tissue engineering, drug screening, and organ on a chip models. PMID:26066320
Unassisted 3D camera calibration
NASA Astrophysics Data System (ADS)
Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.
2012-03-01
With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.
Adaptively Refined Euler and Navier-Stokes Solutions with a Cartesian-Cell Based Scheme
NASA Technical Reports Server (NTRS)
Coirier, William J.; Powell, Kenneth G.
1995-01-01
A Cartesian-cell based scheme with adaptive mesh refinement for solving the Euler and Navier-Stokes equations in two dimensions has been developed and tested. Grids about geometrically complicated bodies were generated automatically, by recursive subdivision of a single Cartesian cell encompassing the entire flow domain. Where the resulting cells intersect bodies, N-sided 'cut' cells were created using polygon-clipping algorithms. The grid was stored in a binary-tree data structure which provided a natural means of obtaining cell-to-cell connectivity and of carrying out solution-adaptive mesh refinement. The Euler and Navier-Stokes equations were solved on the resulting grids using an upwind, finite-volume formulation. The inviscid fluxes were found in an upwinded manner using a linear reconstruction of the cell primitives, providing the input states to an approximate Riemann solver. The viscous fluxes were formed using a Green-Gauss type of reconstruction upon a co-volume surrounding the cell interface. Data at the vertices of this co-volume were found in a linearly K-exact manner, which ensured linear K-exactness of the gradients. Adaptively-refined solutions for the inviscid flow about a four-element airfoil (test case 3) were compared to theory. Laminar, adaptively-refined solutions were compared to accepted computational, experimental and theoretical results.
Electrostatic PIC with adaptive Cartesian mesh
NASA Astrophysics Data System (ADS)
Kolobov, Vladimir; Arslanbekov, Robert
2016-05-01
We describe an initial implementation of an electrostatic Particle-in-Cell (ES-PIC) module with adaptive Cartesian mesh in our Unified Flow Solver framework. Challenges of PIC method with cell-based adaptive mesh refinement (AMR) are related to a decrease of the particle-per-cell number in the refined cells with a corresponding increase of the numerical noise. The developed ES-PIC solver is validated for capacitively coupled plasma, its AMR capabilities are demonstrated for simulations of streamer development during high-pressure gas breakdown. It is shown that cell-based AMR provides a convenient particle management algorithm for exponential multiplications of electrons and ions in the ionization events.
An adaptive Cartesian control scheme for manipulators
NASA Technical Reports Server (NTRS)
Seraji, H.
1987-01-01
A adaptive control scheme for direct control of manipulator end-effectors to achieve trajectory tracking in Cartesian space is developed. The control structure is obtained from linear multivariable theory and is composed of simple feedforward and feedback controllers and an auxiliary input. The direct adaptation laws are derived from model reference adaptive control theory and are not based on parameter estimation of the robot model. The utilization of feedforward control and the inclusion of auxiliary input are novel features of the present scheme and result in improved dynamic performance over existing adaptive control schemes. The adaptive controller does not require the complex mathematical model of the robot dynamics or any knowledge of the robot parameters or the payload, and is computationally fast for online implementation with high sampling rates.
Arena3D: visualization of biological networks in 3D
Pavlopoulos, Georgios A; O'Donoghue, Seán I; Satagopam, Venkata P; Soldatos, Theodoros G; Pafilis, Evangelos; Schneider, Reinhard
2008-01-01
Background Complexity is a key problem when visualizing biological networks; as the number of entities increases, most graphical views become incomprehensible. Our goal is to enable many thousands of entities to be visualized meaningfully and with high performance. Results We present a new visualization tool, Arena3D, which introduces a new concept of staggered layers in 3D space. Related data – such as proteins, chemicals, or pathways – can be grouped onto separate layers and arranged via layout algorithms, such as Fruchterman-Reingold, distance geometry, and a novel hierarchical layout. Data on a layer can be clustered via k-means, affinity propagation, Markov clustering, neighbor joining, tree clustering, or UPGMA ('unweighted pair-group method with arithmetic mean'). A simple input format defines the name and URL for each node, and defines connections or similarity scores between pairs of nodes. The use of Arena3D is illustrated with datasets related to Huntington's disease. Conclusion Arena3D is a user friendly visualization tool that is able to visualize biological or any other network in 3D space. It is free for academic use and runs on any platform. It can be downloaded or lunched directly from . Java3D library and Java 1.5 need to be pre-installed for the software to run. PMID:19040715
Integrated Biogeomorphological Modeling Using Delft3D
NASA Astrophysics Data System (ADS)
Ye, Q.; Jagers, B.
2011-12-01
The skill of numerical morphological models has improved significantly from the early 2D uniform, total load sediment models (with steady state or infrequent wave updates) to recent 3D hydrodynamic models with multiple suspended and bed load sediment fractions and bed stratigraphy (online coupled with waves). Although there remain many open questions within this combined field of hydro- and morphodynamics, we observe an increasing need to include biological processes in the overall dynamics. In riverine and inter-tidal environments, there is often an important influence by riparian vegetation and macrobenthos. Over the past decade more and more researchers have started to extend the simulation environment with wrapper scripts and other quick code hacks to estimate their influence on morphological development in coastal, estuarine and riverine environments. Although one can in this way quickly analyze different approaches, these research tools have generally not been designed with reuse, performance and portability in mind. We have now implemented a reusable, flexible, and efficient two-way link between the Delft3D open source framework for hydrodynamics, waves and morphology, and the water quality and ecology modules. The same link will be used for 1D, 2D and 3D modeling on networks and both structured and unstructured grids. We will describe the concepts of the overall system, and illustrate it with some first results.
3-D textile reinforcements in composite materials
Miravete, A.
1999-11-01
Laminated composite materials have been used in structural applications since the 1960s. However, their high cost and inability to accommodate fibers in the laminate`s thickness direction greatly reduce their damage tolerance and impact resistance. The second generation of materials--3-D textile reinforced composites--offers significant cost reduction, and by incorporating reinforcement in the thickness direction, dramatically increases damage tolerance and impact resistance. However, methods for predicting mechanical properties of 3-D textile reinforced composite materials tend to be more complex. These materials also have disadvantages--particularly in regard to crimps in the yarns--that require more research. Textile preforms, micro- and macromechanical modeling, manufacturing processes, and characterization all need further development. As researchers overcome these problems, this new generation of composites will emerge as a highly competitive family of materials. This book provides a state-of-the-art account of this promising technology. In it, top experts describe the manufacturing processes, highlight the advantages, identify the main applications, analyze methods for predicting mechanical properties, and detail various reinforcement strategies, including grid structure, knitted fabric composites, and the braiding technique. Armed with the information in this book, readers will be prepared to better exploit the advantages of 3-D textile reinforced composites, overcome its disadvantages, and contribute to the further development of the technology.
NASA Astrophysics Data System (ADS)
Otis, Collin; Ferrero, Pietro; Candler, Graham; Givi, Peyman
2013-11-01
The scalar filtered mass density function (SFMDF) methodology is implemented into the computer code US3D. This is an unstructured Eulerian finite volume hydrodynamic solver and has proven very effective for simulation of compressible turbulent flows. The resulting SFMDF-US3D code is employed for large eddy simulation (LES) on unstructured meshes. Simulations are conducted of subsonic and supersonic flows under non-reacting and reacting conditions. The consistency and the accuracy of the simulated results are assessed along with appraisal of the overall performance of the methodology. The SFMDF-US3D is now capable of simulating high speed flows in complex configurations.
A Hybrid Advection Scheme for Conserving Angular Momentum on a Refined Cartesian Mesh
NASA Astrophysics Data System (ADS)
Byerly, Zachary D.; Adelstein-Lelbach, Bryce; Tohline, Joel E.; Marcello, Dominic C.
2014-06-01
We test a new "hybrid" scheme for simulating dynamical fluid flows in which cylindrical components of the momentum are advected across a rotating Cartesian coordinate mesh. This hybrid scheme allows us to conserve angular momentum to machine precision while capitalizing on the advantages offered by a Cartesian mesh, such as a straightforward implementation of mesh refinement. Our test focuses on measuring the real and imaginary parts of the eigenfrequency of unstable nonaxisymmetric modes that naturally arise in massless polytropic tori having a range of different aspect ratios and on quantifying the uncertainty in these measurements. Our measured eigenfrequencies show good agreement with the results obtained from the linear stability analysis of Kojima and from nonlinear hydrodynamic simulations performed on a cylindrical coordinate mesh by Woodward et al. When compared against results conducted with a traditional Cartesian advection scheme, the hybrid scheme achieves qualitative convergence at the same or, in some cases, much lower grid resolutions and conserves angular momentum to a much higher degree of precision. As a result, this hybrid scheme is much better suited for simulating astrophysical fluid flows such as accretion disks and mass-transferring binary systems.
NASA Astrophysics Data System (ADS)
Melaaen, M. C.
1992-02-01
Tensor calculus is presently employed to furnish both necessary coordinate and velocity transformations in the present use of two different finite-volume methods for discretization of conservation equations in 3D curvilinear nonorthogonal coordinates. While one method is based on the nonstaggered grid arrangement and employs Cartesian velocity components as dependent variables in the momentum equations, the other combines a staggered grid arrangement with physical covariant velocity projections in a locally fixed coordinate system. In the second part of this work, a comparative evaluation of the two methods indicates that while results of comparable accuracy are achieved after a similar number of iterations, the staggered method may be recommended for curvilinear nonorthogonal coordinate problems due to its reduced memory and computational requirements.
Chilcoat, S.R. Hildebrand, S.T.
1995-12-31
Travel time computation in inhomogeneous media is essential for pre-stack Kirchhoff imaging in areas such as the sub-salt province in the Gulf of Mexico. The 2D algorithm published by Vinje, et al, has been extended to 3D to compute wavefronts in complicated inhomogeneous media. The 3D wavefront construction algorithm provides many advantages over conventional ray tracing and other methods of computing travel times in 3D. The algorithm dynamically maintains a reasonably consistent ray density without making a priori guesses at the number of rays to shoot. The determination of caustics in 3D is a straight forward geometric procedure. The wavefront algorithm also enables the computation of multi-valued travel time surfaces.
NASA Astrophysics Data System (ADS)
Yang, Xu; Zhang, Yong; Yang, Chenghua; Xu, Lu; Wang, Qiang; Zhao, Yuan
2016-06-01
Conventional three dimensional (3D) ghost imaging measures range of target based on pulse fight time measurement method. Due to the limit of data acquisition system sampling rate, range resolution of the conventional 3D ghost imaging is usually low. In order to take off the effect of sampling rate to range resolution of 3D ghost imaging, a heterodyne 3D ghost imaging (HGI) system is presented in this study. The source of HGI is a continuous wave laser instead of pulse laser. Temporal correlation and spatial correlation of light are both utilized to obtain the range image of target. Through theory analysis and numerical simulations, it is demonstrated that HGI can obtain high range resolution image with low sampling rate.
Planet-Disk Interaction on the GPU: The FARGO3D code
NASA Astrophysics Data System (ADS)
Masset, F. S.; Benítez-Llambay, P.
2015-10-01
We present the new code FARGO3D. It is a finite difference code that solves the equations of hydrodynamics or magnetohydrodynamics on a Cartesian, cylindrical or spherical mesh. It features orbital advection, conserves mass and (angular) momentum to machine accuracy. Special emphasis is put on the description of planet disk tidal interactions. It is parallelized with MPI, and it can run indistinctly on CPUs or GPUs, without the need to program in a GPU oriented language.
Axisymmetric Implementation for 3D-Based DSMC Codes
NASA Technical Reports Server (NTRS)
Stewart, Benedicte; Lumpkin, F. E.; LeBeau, G. J.
2011-01-01
The primary objective in developing NASA s DSMC Analysis Code (DAC) was to provide a high fidelity modeling tool for 3D rarefied flows such as vacuum plume impingement and hypersonic re-entry flows [1]. The initial implementation has been expanded over time to offer other capabilities including a novel axisymmetric implementation. Because of the inherently 3D nature of DAC, this axisymmetric implementation uses a 3D Cartesian domain and 3D surfaces. Molecules are moved in all three dimensions but their movements are limited by physical walls to a small wedge centered on the plane of symmetry (Figure 1). Unfortunately, far from the axis of symmetry, the cell size in the direction perpendicular to the plane of symmetry (the Z-direction) may become large compared to the flow mean free path. This frequently results in inaccuracies in these regions of the domain. A new axisymmetric implementation is presented which aims to solve this issue by using Bird s approach for the molecular movement while preserving the 3D nature of the DAC software [2]. First, the computational domain is similar to that previously used such that a wedge must still be used to define the inflow surface and solid walls within the domain. As before molecules are created inside the inflow wedge triangles but they are now rotated back to the symmetry plane. During the move step, molecules are moved in 3D but instead of interacting with the wedge walls, the molecules are rotated back to the plane of symmetry at the end of the move step. This new implementation was tested for multiple flows over axisymmetric shapes, including a sphere, a cone, a double cone and a hollow cylinder. Comparisons to previous DSMC solutions and experiments, when available, are made.
Combinatorial 3D Mechanical Metamaterials
NASA Astrophysics Data System (ADS)
Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin
2015-03-01
We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist of cubic lattices of anisotropic unit cells that can be tiled in a complex combinatorial fashion. We design and 3d-print this complex ordered mechanism, in which we combine elastic hinges and defects to tailor the mechanics of the material. Finally, we use this large design space to encode smart functionalities such as surface patterning and multistability.
New iterative gridding algorithm using conjugate gradient method
NASA Astrophysics Data System (ADS)
Jiang, Xuguang; Thedens, Daniel
2004-05-01
Non-uniformly sampled data in MRI applications must be interpolated onto a regular Cartesian grid to perform fast image reconstruction using FFT. The conventional method for this is gridding, which requires a density compensation function (DCF). The calculation of DCF may be time-consuming, ambiguously defined, and may not be always reusable due to changes in k-space trajectories. A recently proposed reconstruction method that eliminates the requirement of DCF is block uniform resampling (BURS) which uses singular value decomposition (SVD). However, the SVD is still computationally intensive. In this work, we present a modified BURS algorithm using conjugate gradient method (CGM) in place of direct SVD calculation. Calculation of a block of grid point values in each iteration further reduces the computational load. The new method reduces the calculation complexity while maintaining a high-quality reconstruction result. For an n-by-n matrix, the time complexity per iteration is reduced from O(n*n*n) in SVD to O(n*n) in CGM. The time can be further reduced when we stop the iteration in CGM earlier according to the norm of the residual vector. Using this method, the quality of the reconstructed image improves compared to regularized BURS. The reduced time complexity and improved reconstruction result make the new algorithm promising in dealing with large-sized images and 3D images.
Met.3D - a new open-source tool for interactive 3D visualization of ensemble weather forecasts
NASA Astrophysics Data System (ADS)
Rautenhaus, Marc; Kern, Michael; Schäfler, Andreas; Westermann, Rüdiger
2015-04-01
We introduce Met.3D, a new open-source tool for the interactive 3D visualization of numerical ensemble weather predictions. The tool has been developed to support weather forecasting during aircraft-based atmospheric field campaigns, however, is applicable to further forecasting, research and teaching activities. Our work approaches challenging topics related to the visual analysis of numerical atmospheric model output -- 3D visualisation, ensemble visualization, and how both can be used in a meaningful way suited to weather forecasting. Met.3D builds a bridge from proven 2D visualization methods commonly used in meteorology to 3D visualization by combining both visualization types in a 3D context. It implements methods that address the issue of spatial perception in the 3D view as well as approaches to using the ensemble in order to assess forecast uncertainty. Interactivity is key to the Met.3D approach. The tool uses modern graphics hardware technology to achieve interactive visualization of present-day numerical weather prediction datasets on standard consumer hardware. Met.3D supports forecast data from the European Centre for Medium Range Weather Forecasts and operates directly on ECMWF hybrid sigma-pressure level grids. In this presentation, we provide an overview of the software --illustrated with short video examples--, and give information on its availability.
West Flank Coso, CA FORGE 3D geologic model
Doug Blankenship
2016-03-01
This is an x,y,z file of the West Flank FORGE 3D geologic model. Model created in Earthvision by Dynamic Graphic Inc. The model was constructed with a grid spacing of 100 m. Geologic surfaces were extrapolated from the input data using a minimum tension gridding algorithm. The data file is tabular data in a text file, with lithology data associated with X,Y,Z grid points. All the relevant information is in the file header (the spatial reference, the projection etc.) In addition all the fields in the data file are identified in the header.
Streamlined, Inexpensive 3D Printing of the Brain and Skull.
Naftulin, Jason S; Kimchi, Eyal Y; Cash, Sydney S
2015-01-01
Neuroimaging technologies such as Magnetic Resonance Imaging (MRI) and Computed Tomography (CT) collect three-dimensional data (3D) that is typically viewed on two-dimensional (2D) screens. Actual 3D models, however, allow interaction with real objects such as implantable electrode grids, potentially improving patient specific neurosurgical planning and personalized clinical education. Desktop 3D printers can now produce relatively inexpensive, good quality prints. We describe our process for reliably generating life-sized 3D brain prints from MRIs and 3D skull prints from CTs. We have integrated a standardized, primarily open-source process for 3D printing brains and skulls. We describe how to convert clinical neuroimaging Digital Imaging and Communications in Medicine (DICOM) images to stereolithography (STL) files, a common 3D object file format that can be sent to 3D printing services. We additionally share how to convert these STL files to machine instruction gcode files, for reliable in-house printing on desktop, open-source 3D printers. We have successfully printed over 19 patient brain hemispheres from 7 patients on two different open-source desktop 3D printers. Each brain hemisphere costs approximately $3-4 in consumable plastic filament as described, and the total process takes 14-17 hours, almost all of which is unsupervised (preprocessing = 4-6 hr; printing = 9-11 hr, post-processing = <30 min). Printing a matching portion of a skull costs $1-5 in consumable plastic filament and takes less than 14 hr, in total. We have developed a streamlined, cost-effective process for 3D printing brain and skull models. We surveyed healthcare providers and patients who confirmed that rapid-prototype patient specific 3D models may help interdisciplinary surgical planning and patient education. The methods we describe can be applied for other clinical, research, and educational purposes. PMID:26295459
Streamlined, Inexpensive 3D Printing of the Brain and Skull
Cash, Sydney S.
2015-01-01
Neuroimaging technologies such as Magnetic Resonance Imaging (MRI) and Computed Tomography (CT) collect three-dimensional data (3D) that is typically viewed on two-dimensional (2D) screens. Actual 3D models, however, allow interaction with real objects such as implantable electrode grids, potentially improving patient specific neurosurgical planning and personalized clinical education. Desktop 3D printers can now produce relatively inexpensive, good quality prints. We describe our process for reliably generating life-sized 3D brain prints from MRIs and 3D skull prints from CTs. We have integrated a standardized, primarily open-source process for 3D printing brains and skulls. We describe how to convert clinical neuroimaging Digital Imaging and Communications in Medicine (DICOM) images to stereolithography (STL) files, a common 3D object file format that can be sent to 3D printing services. We additionally share how to convert these STL files to machine instruction gcode files, for reliable in-house printing on desktop, open-source 3D printers. We have successfully printed over 19 patient brain hemispheres from 7 patients on two different open-source desktop 3D printers. Each brain hemisphere costs approximately $3–4 in consumable plastic filament as described, and the total process takes 14–17 hours, almost all of which is unsupervised (preprocessing = 4–6 hr; printing = 9–11 hr, post-processing = <30 min). Printing a matching portion of a skull costs $1–5 in consumable plastic filament and takes less than 14 hr, in total. We have developed a streamlined, cost-effective process for 3D printing brain and skull models. We surveyed healthcare providers and patients who confirmed that rapid-prototype patient specific 3D models may help interdisciplinary surgical planning and patient education. The methods we describe can be applied for other clinical, research, and educational purposes. PMID:26295459
Functional Equivalence Acceptance Testing of FUN3D for Entry Descent and Landing Applications
NASA Technical Reports Server (NTRS)
Gnoffo, Peter A.; Wood, William A.; Kleb, William L.; Alter, Stephen J.; Glass, Christopher E.; Padilla, Jose F.; Hammond, Dana P.; White, Jeffery A.
2013-01-01
The functional equivalence of the unstructured grid code FUN3D to the the structured grid code LAURA (Langley Aerothermodynamic Upwind Relaxation Algorithm) is documented for applications of interest to the Entry, Descent, and Landing (EDL) community. Examples from an existing suite of regression tests are used to demonstrate the functional equivalence, encompassing various thermochemical models and vehicle configurations. Algorithm modifications required for the node-based unstructured grid code (FUN3D) to reproduce functionality of the cell-centered structured code (LAURA) are also documented. Challenges associated with computation on tetrahedral grids versus computation on structured-grid derived hexahedral systems are discussed.
NASA Technical Reports Server (NTRS)
Coirier, William J.; Powell, Kenneth G.
1994-01-01
A Cartesian, cell-based approach for adaptively-refined solutions of the Euler and Navier-Stokes equations in two dimensions is developed and tested. Grids about geometrically complicated bodies are generated automatically, by recursive subdivision of a single Cartesian cell encompassing the entire flow domain. Where the resulting cells intersect bodies, N-sided 'cut' cells are created using polygon-clipping algorithms. The grid is stored in a binary-tree structure which provides a natural means of obtaining cell-to-cell connectivity and of carrying out solution-adaptive mesh refinement. The Euler and Navier-Stokes equations are solved on the resulting grids using a finite-volume formulation. The convective terms are upwinded: a gradient-limited, linear reconstruction of the primitive variables is performed, providing input states to an approximate Riemann solver for computing the fluxes between neighboring cells. The more robust of a series of viscous flux functions is used to provide the viscous fluxes at the cell interfaces. Adaptively-refined solutions of the Navier-Stokes equations using the Cartesian, cell-based approach are obtained and compared to theory, experiment, and other accepted computational results for a series of low and moderate Reynolds number flows.
NASA Technical Reports Server (NTRS)
Coirier, William J.; Powell, Kenneth G.
1995-01-01
A Cartesian, cell-based approach for adaptively-refined solutions of the Euler and Navier-Stokes equations in two dimensions is developed and tested. Grids about geometrically complicated bodies are generated automatically, by recursive subdivision of a single Cartesian cell encompassing the entire flow domain. Where the resulting cells intersect bodies, N-sided 'cut' cells are created using polygon-clipping algorithms. The grid is stored in a binary-tree data structure which provides a natural means of obtaining cell-to-cell connectivity and of carrying out solution-adaptive mesh refinement. The Euler and Navier-Stokes equations are solved on the resulting grids using a finite-volume formulation. The convective terms are upwinded: A gradient-limited, linear reconstruction of the primitive variables is performed, providing input states to an approximate Riemann solver for computing the fluxes between neighboring cells. The more robust of a series of viscous flux functions is used to provide the viscous fluxes at the cell interfaces. Adaptively-refined solutions of the Navier-Stokes equations using the Cartesian, cell-based approach are obtained and compared to theory, experiment and other accepted computational results for a series of low and moderate Reynolds number flows.
NASA Astrophysics Data System (ADS)
Dima, M.; Farisato, G.; Bergomi, M.; Viotto, V.; Magrin, D.; Greggio, D.; Farinato, J.; Marafatto, L.; Ragazzoni, R.; Piazza, D.
2014-08-01
In the last few years 3D printing is getting more and more popular and used in many fields going from manufacturing to industrial design, architecture, medical support and aerospace. 3D printing is an evolution of bi-dimensional printing, which allows to obtain a solid object from a 3D model, realized with a 3D modelling software. The final product is obtained using an additive process, in which successive layers of material are laid down one over the other. A 3D printer allows to realize, in a simple way, very complex shapes, which would be quite difficult to be produced with dedicated conventional facilities. Thanks to the fact that the 3D printing is obtained superposing one layer to the others, it doesn't need any particular work flow and it is sufficient to simply draw the model and send it to print. Many different kinds of 3D printers exist based on the technology and material used for layer deposition. A common material used by the toner is ABS plastics, which is a light and rigid thermoplastic polymer, whose peculiar mechanical properties make it diffusely used in several fields, like pipes production and cars interiors manufacturing. I used this technology to create a 1:1 scale model of the telescope which is the hardware core of the space small mission CHEOPS (CHaracterising ExOPlanets Satellite) by ESA, which aims to characterize EXOplanets via transits observations. The telescope has a Ritchey-Chrétien configuration with a 30cm aperture and the launch is foreseen in 2017. In this paper, I present the different phases for the realization of such a model, focusing onto pros and cons of this kind of technology. For example, because of the finite printable volume (10×10×12 inches in the x, y and z directions respectively), it has been necessary to split the largest parts of the instrument in smaller components to be then reassembled and post-processed. A further issue is the resolution of the printed material, which is expressed in terms of layers
Grid generation research at OSU
NASA Technical Reports Server (NTRS)
Nakamura, S.
1992-01-01
In the last two years, effort was concentrated on: (1) surface modeling; (2) surface grid generation; and (3) 3-D flow space grid generation. The surface modeling shares the same objectives as the surface modeling in computer aided design (CAD), so software available in CAD can in principle be used for solid modeling. Unfortunately, however, the CAD software cannot be easily used in practice for grid generation purposes, because they are not designed to provide appropriate data base for grid generation. Therefore, we started developing a generalized surface modeling software from scratch, that provides the data base for the surface grid generation. Generating surface grid is an important step in generating a 3-D space for flow space. To generate a surface grid on a given surface representation, we developed a unique algorithm that works on any non-smooth surfaces. Once the surface grid is generated, a 3-D space can be generated. For this purpose, we also developed a new algorithm, which is a hybrid of the hyperbolic and the elliptic grid generation methods. With this hybrid method, orthogonality of the grid near the solid boundary can be easily achieved without introducing empirical fudge factors. Work to develop 2-D and 3-D grids for turbomachinery blade geometries was performed, and as an extension of this research we are planning to develop an adaptive grid procedure with an interactive grid environment.
Athena3D: Flux-conservative Godunov-type algorithm for compressible magnetohydrodynamics
NASA Astrophysics Data System (ADS)
Hawley, John; Simon, Jake; Stone, James; Gardiner, Thomas; Teuben, Peter
2015-05-01
Written in FORTRAN, Athena3D, based on Athena (ascl:1010.014), is an implementation of a flux-conservative Godunov-type algorithm for compressible magnetohydrodynamics. Features of the Athena3D code include compressible hydrodynamics and ideal MHD in one, two or three spatial dimensions in Cartesian coordinates; adiabatic and isothermal equations of state; 1st, 2nd or 3rd order reconstruction using the characteristic variables; and numerical fluxes computed using the Roe scheme. In addition, it offers the ability to add source terms to the equations and is parallelized based on MPI.
YouDash3D: exploring stereoscopic 3D gaming for 3D movie theaters
NASA Astrophysics Data System (ADS)
Schild, Jonas; Seele, Sven; Masuch, Maic
2012-03-01
Along with the success of the digitally revived stereoscopic cinema, events beyond 3D movies become attractive for movie theater operators, i.e. interactive 3D games. In this paper, we present a case that explores possible challenges and solutions for interactive 3D games to be played by a movie theater audience. We analyze the setting and showcase current issues related to lighting and interaction. Our second focus is to provide gameplay mechanics that make special use of stereoscopy, especially depth-based game design. Based on these results, we present YouDash3D, a game prototype that explores public stereoscopic gameplay in a reduced kiosk setup. It features live 3D HD video stream of a professional stereo camera rig rendered in a real-time game scene. We use the effect to place the stereoscopic effigies of players into the digital game. The game showcases how stereoscopic vision can provide for a novel depth-based game mechanic. Projected trigger zones and distributed clusters of the audience video allow for easy adaptation to larger audiences and 3D movie theater gaming.
Remote 3D Medical Consultation
NASA Astrophysics Data System (ADS)
Welch, Greg; Sonnenwald, Diane H.; Fuchs, Henry; Cairns, Bruce; Mayer-Patel, Ketan; Yang, Ruigang; State, Andrei; Towles, Herman; Ilie, Adrian; Krishnan, Srinivas; Söderholm, Hanna M.
Two-dimensional (2D) video-based telemedical consultation has been explored widely in the past 15-20 years. Two issues that seem to arise in most relevant case studies are the difficulty associated with obtaining the desired 2D camera views, and poor depth perception. To address these problems we are exploring the use of a small array of cameras to synthesize a spatially continuous range of dynamic three-dimensional (3D) views of a remote environment and events. The 3D views can be sent across wired or wireless networks to remote viewers with fixed displays or mobile devices such as a personal digital assistant (PDA). The viewpoints could be specified manually or automatically via user head or PDA tracking, giving the remote viewer virtual head- or hand-slaved (PDA-based) remote cameras for mono or stereo viewing. We call this idea remote 3D medical consultation (3DMC). In this article we motivate and explain the vision for 3D medical consultation; we describe the relevant computer vision/graphics, display, and networking research; we present a proof-of-concept prototype system; and we present some early experimental results supporting the general hypothesis that 3D remote medical consultation could offer benefits over conventional 2D televideo.
NASA Technical Reports Server (NTRS)
2002-01-01
In 1999, Genex submitted a proposal to Stennis Space Center for a volumetric 3-D display technique that would provide multiple users with a 360-degree perspective to simultaneously view and analyze 3-D data. The futuristic capabilities of the VolumeViewer(R) have offered tremendous benefits to commercial users in the fields of medicine and surgery, air traffic control, pilot training and education, computer-aided design/computer-aided manufacturing, and military/battlefield management. The technology has also helped NASA to better analyze and assess the various data collected by its satellite and spacecraft sensors. Genex capitalized on its success with Stennis by introducing two separate products to the commercial market that incorporate key elements of the 3-D display technology designed under an SBIR contract. The company Rainbow 3D(R) imaging camera is a novel, three-dimensional surface profile measurement system that can obtain a full-frame 3-D image in less than 1 second. The third product is the 360-degree OmniEye(R) video system. Ideal for intrusion detection, surveillance, and situation management, this unique camera system offers a continuous, panoramic view of a scene in real time.
Au, Anthony K; Huynh, Wilson; Horowitz, Lisa F; Folch, Albert
2016-03-14
The advent of soft lithography allowed for an unprecedented expansion in the field of microfluidics. However, the vast majority of PDMS microfluidic devices are still made with extensive manual labor, are tethered to bulky control systems, and have cumbersome user interfaces, which all render commercialization difficult. On the other hand, 3D printing has begun to embrace the range of sizes and materials that appeal to the developers of microfluidic devices. Prior to fabrication, a design is digitally built as a detailed 3D CAD file. The design can be assembled in modules by remotely collaborating teams, and its mechanical and fluidic behavior can be simulated using finite-element modeling. As structures are created by adding materials without the need for etching or dissolution, processing is environmentally friendly and economically efficient. We predict that in the next few years, 3D printing will replace most PDMS and plastic molding techniques in academia. PMID:26854878
Finite-difference solutions of the 3-D eikonal equation
Fei, Tong; Fehler, M.C.; Hildebrand, S.T.
1995-12-31
Prestack Kirchhoff depth migration requires the computation of traveltimes from surface source and receiver locations to subsurface image locations. In 3-D problems, computational efficiency becomes important. Finite-difference solutions of the eikonal equation provide computationally efficient methods for generating the traveltime information. Here, a novel finite-difference solutions of the eikonal equation provide computationally efficient methods for generating the traveltime information. Here, a novel finite-difference method for computing the first arrival traveltime by solving the eikonal equation has been developed in Cartesian coordinates. The method, which is unconditionally stable and computationally efficient, can handle instabilities due to caustics and provide information about head waves. The comparison of finite-difference solutions of the acoustic wave equation with the traveltime solutions from the eikonal equation in various structure models demonstrate that the method developed here can provide correct first arrival traveltime information even in areas of complex velocity structure.
Interactive surface grid generation
NASA Technical Reports Server (NTRS)
Luh, Raymond Ching-Chung; Pierce, Lawrence E.; Yip, David
1991-01-01
This paper describes a surface grid generation tool called S3D. It is the result of integrating a robust and widely applicable interpolation technique with the latest in workstation technology. Employing the use of a highly efficient and user-friendly graphical interface, S3D permits real-time interactive analyses of surface geometry data and facilitates the construction of surface grids for a wide range of applications in Computational Fluid Dynamics (CFD). The design objectives are for S3D to be stand-alone and easy to use so that CFD analysts can take a hands-on approach toward most if not all of their surface grid generation needs. Representative examples of S3D applications are presented in describing the various elements involved in the process.
S2PLOT: Three-dimensional (3D) Plotting Library
NASA Astrophysics Data System (ADS)
Barnes, D. G.; Fluke, C. J.; Bourke, P. D.; Parry, O. T.
2011-03-01
We present a new, three-dimensional (3D) plotting library with advanced features, and support for standard and enhanced display devices. The library - S2PLOT - is written in C and can be used by C, C++ and FORTRAN programs on GNU/Linux and Apple/OSX systems. S2PLOT draws objects in a 3D (x,y,z) Cartesian space and the user interactively controls how this space is rendered at run time. With a PGPLOT inspired interface, S2PLOT provides astronomers with elegant techniques for displaying and exploring 3D data sets directly from their program code, and the potential to use stereoscopic and dome display devices. The S2PLOT architecture supports dynamic geometry and can be used to plot time-evolving data sets, such as might be produced by simulation codes. In this paper, we introduce S2PLOT to the astronomical community, describe its potential applications, and present some example uses of the library.
3D Computations and Experiments
Couch, R; Faux, D; Goto, D; Nikkel, D
2004-04-05
This project consists of two activities. Task A, Simulations and Measurements, combines all the material model development and associated numerical work with the materials-oriented experimental activities. The goal of this effort is to provide an improved understanding of dynamic material properties and to provide accurate numerical representations of those properties for use in analysis codes. Task B, ALE3D Development, involves general development activities in the ALE3D code with the focus of improving simulation capabilities for problems of mutual interest to DoD and DOE. Emphasis is on problems involving multi-phase flow, blast loading of structures and system safety/vulnerability studies.
3D Computations and Experiments
Couch, R; Faux, D; Goto, D; Nikkel, D
2003-05-12
This project is in its first full year after the combining of two previously funded projects: ''3D Code Development'' and ''Dynamic Material Properties''. The motivation behind this move was to emphasize and strengthen the ties between the experimental work and the computational model development in the materials area. The next year's activities will indicate the merging of the two efforts. The current activity is structured in two tasks. Task A, ''Simulations and Measurements'', combines all the material model development and associated numerical work with the materials-oriented experimental activities. Task B, ''ALE3D Development'', is a continuation of the non-materials related activities from the previous project.
NASA Astrophysics Data System (ADS)
Lougovski, A.; Hofheinz, F.; Maus, J.; Schramm, G.; Will, E.; van den Hoff, J.
2014-02-01
The aim of this study is the evaluation of on-the-fly volume of intersection computation for system’s geometry modelling in 3D PET image reconstruction. For this purpose we propose a simple geometrical model in which the cubic image voxels on the given Cartesian grid are approximated with spheres and the rectangular tubes of response (ToRs) are approximated with cylinders. The model was integrated into a fully 3D list-mode PET reconstruction for performance evaluation. In our model the volume of intersection between a voxel and the ToR is only a function of the impact parameter (the distance between voxel centre to ToR axis) but is independent of the relative orientation of voxel and ToR. This substantially reduces the computational complexity of the system matrix calculation. Based on phantom measurements it was determined that adjusting the diameters of the spherical voxel size and the ToR in such a way that the actual voxel and ToR volumes are conserved leads to the best compromise between high spatial resolution, low noise, and suppression of Gibbs artefacts in the reconstructed images. Phantom as well as clinical datasets from two different PET systems (Siemens ECAT HR+ and Philips Ingenuity-TF PET/MR) were processed using the developed and the respective vendor-provided (line of intersection related) reconstruction algorithms. A comparison of the reconstructed images demonstrated very good performance of the new approach. The evaluation showed the respective vendor-provided reconstruction algorithms to possess 34-41% lower resolution compared to the developed one while exhibiting comparable noise levels. Contrary to explicit point spread function modelling our model has a simple straight-forward implementation and it should be easy to integrate into existing reconstruction software, making it competitive to other existing resolution recovery techniques.
A geoscience perspective on immersive 3D gridded data visualization
NASA Astrophysics Data System (ADS)
Billen, Magali I.; Kreylos, Oliver; Hamann, Bernd; Jadamec, Margarete A.; Kellogg, Louise H.; Staadt, Oliver; Sumner, Dawn Y.
2008-09-01
We describe visualization software, Visualizer, that was developed specifically for interactive, visual exploration in immersive virtual reality (VR) environments. Visualizer uses carefully optimized algorithms and data structures to support the high frame rates required for immersion and the real-time feedback required for interactivity. As an application developed for VR from the ground up, Visualizer realizes benefits that usually cannot be achieved by software initially developed for the desktop and later ported to VR. However, Visualizer can also be used on desktop systems (unix/linux-based operating systems including Mac OS X) with a similar level of real-time interactivity, bridging the "software gap" between desktop and VR that has been an obstacle for the adoption of VR methods in the Geosciences. While many of the capabilities of Visualizer are already available in other software packages used in a desktop environment, the features that distinguish Visualizer are: (1) Visualizer can be used in any VR environment including the desktop, GeoWall, or CAVE, (2) in non-desktop environments the user interacts with the data set directly using a wand or other input devices instead of working indirectly via dialog boxes or text input, (3) on the desktop, Visualizer provides real-time interaction with very large data sets that cannot easily be viewed or manipulated in other software packages. Three case studies are presented that illustrate the direct scientific benefits realized by analyzing data or simulation results with Visualizer in a VR environment. We also address some of the main obstacles to widespread use of VR environments in scientific research with a user study that shows Visualizer is easy to learn and to use in a VR environment and can be as effective on desktop systems as native desktop applications.
Frank, Lawrence R.; Jung, Youngkyoo; Inati, Souheil; Tyszka, J. Michael; Wong, Eric C.
2009-01-01
We present an acquisition and reconstruction method designed to acquire high resolution 3D fast spin echo diffusion tensor images while mitigating the major sources of artifacts in DTI - field distortions, eddy currents and motion. The resulting images, being 3D, are of high SNR, and being fast spin echoes, exhibit greatly reduced field distortions. This sequence utilizes variable density spiral acquisition gradients, which allow for the implementation of a self-navigation scheme by which both eddy current and motion artifacts are removed. The result is that high resolution 3D DTI images are produced without the need for eddy current compensating gradients or B0 field correction. In addition, a novel method for fast and accurate reconstruction of the non-Cartesian data is employed. Results are demonstrated in the brains of normal human volunteers. PMID:19778618
2007-07-20
This software distribution contains MATLAB and C++ code to enable identity verification using 3D images that may or may not contain a texture component. The code is organized to support system performance testing and system capability demonstration through the proper configuration of the available user interface. Using specific algorithm parameters the face recognition system has been demonstrated to achieve a 96.6% verification rate (Pd) at 0.001 false alarm rate. The system computes robust facial featuresmore » of a 3D normalized face using Principal Component Analysis (PCA) and Fisher Linear Discriminant Analysis (FLDA). A 3D normalized face is obtained by alighning each face, represented by a set of XYZ coordinated, to a scaled reference face using the Iterative Closest Point (ICP) algorithm. The scaled reference face is then deformed to the input face using an iterative framework with parameters that control the deformed surface regulation an rate of deformation. A variety of options are available to control the information that is encoded by the PCA. Such options include the XYZ coordinates, the difference of each XYZ coordinates from the reference, the Z coordinate, the intensity/texture values, etc. In addition to PCA/FLDA feature projection this software supports feature matching to obtain similarity matrices for performance analysis. In addition, this software supports visualization of the STL, MRD, 2D normalized, and PCA synthetic representations in a 3D environment.« less
ERIC Educational Resources Information Center
Manos, Harry
2016-01-01
Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the "TPT" theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity…
Russ, Trina; Koch, Mark; Koudelka, Melissa; Peters, Ralph; Little, Charles; Boehnen, Chris; Peters, Tanya
2007-07-20
This software distribution contains MATLAB and C++ code to enable identity verification using 3D images that may or may not contain a texture component. The code is organized to support system performance testing and system capability demonstration through the proper configuration of the available user interface. Using specific algorithm parameters the face recognition system has been demonstrated to achieve a 96.6% verification rate (Pd) at 0.001 false alarm rate. The system computes robust facial features of a 3D normalized face using Principal Component Analysis (PCA) and Fisher Linear Discriminant Analysis (FLDA). A 3D normalized face is obtained by alighning each face, represented by a set of XYZ coordinated, to a scaled reference face using the Iterative Closest Point (ICP) algorithm. The scaled reference face is then deformed to the input face using an iterative framework with parameters that control the deformed surface regulation an rate of deformation. A variety of options are available to control the information that is encoded by the PCA. Such options include the XYZ coordinates, the difference of each XYZ coordinates from the reference, the Z coordinate, the intensity/texture values, etc. In addition to PCA/FLDA feature projection this software supports feature matching to obtain similarity matrices for performance analysis. In addition, this software supports visualization of the STL, MRD, 2D normalized, and PCA synthetic representations in a 3D environment.
3D Printing: Exploring Capabilities
ERIC Educational Resources Information Center
Samuels, Kyle; Flowers, Jim
2015-01-01
As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…
Application of FUN3D Solver for Aeroacoustics Simulation of a Nose Landing Gear Configuration
NASA Technical Reports Server (NTRS)
Vatsa, Veer N.; Lockard, David P.; Khorrami, Mehdi R.
2011-01-01
Numerical simulations have been performed for a nose landing gear configuration corresponding to the experimental tests conducted in the Basic Aerodynamic Research Tunnel at NASA Langley Research Center. A widely used unstructured grid code, FUN3D, is examined for solving the unsteady flow field associated with this configuration. A series of successively finer unstructured grids has been generated to assess the effect of grid refinement. Solutions have been obtained on purely tetrahedral grids as well as mixed element grids using hybrid RANS/LES turbulence models. The agreement of FUN3D solutions with experimental data on the same size mesh is better on mixed element grids compared to pure tetrahedral grids, and in general improves with grid refinement.
Adjoint Algorithm for CAD-Based Shape Optimization Using a Cartesian Method
NASA Technical Reports Server (NTRS)
Nemec, Marian; Aftosmis, Michael J.
2004-01-01
Adjoint solutions of the governing flow equations are becoming increasingly important for the development of efficient analysis and optimization algorithms. A well-known use of the adjoint method is gradient-based shape optimization. Given an objective function that defines some measure of performance, such as the lift and drag functionals, its gradient is computed at a cost that is essentially independent of the number of design variables (geometric parameters that control the shape). More recently, emerging adjoint applications focus on the analysis problem, where the adjoint solution is used to drive mesh adaptation, as well as to provide estimates of functional error bounds and corrections. The attractive feature of this approach is that the mesh-adaptation procedure targets a specific functional, thereby localizing the mesh refinement and reducing computational cost. Our focus is on the development of adjoint-based optimization techniques for a Cartesian method with embedded boundaries.12 In contrast t o implementations on structured and unstructured grids, Cartesian methods decouple the surface discretization from the volume mesh. This feature makes Cartesian methods well suited for the automated analysis of complex geometry problems, and consequently a promising approach to aerodynamic optimization. Melvin et developed an adjoint formulation for the TRANAIR code, which is based on the full-potential equation with viscous corrections. More recently, Dadone and Grossman presented an adjoint formulation for the Euler equations. In both approaches, a boundary condition is introduced to approximate the effects of the evolving surface shape that results in accurate gradient computation. Central to automated shape optimization algorithms is the issue of geometry modeling and control. The need to optimize complex, "real-life" geometry provides a strong incentive for the use of parametric-CAD systems within the optimization procedure. In previous work, we presented
TACO3D. 3-D Finite Element Heat Transfer Code
Mason, W.E.
1992-03-04
TACO3D is a three-dimensional, finite-element program for heat transfer analysis. An extension of the two-dimensional TACO program, it can perform linear and nonlinear analyses and can be used to solve either transient or steady-state problems. The program accepts time-dependent or temperature-dependent material properties, and materials may be isotropic or orthotropic. A variety of time-dependent and temperature-dependent boundary conditions and loadings are available including temperature, flux, convection, and radiation boundary conditions and internal heat generation. Additional specialized features treat enclosure radiation, bulk nodes, and master/slave internal surface conditions (e.g., contact resistance). Data input via a free-field format is provided. A user subprogram feature allows for any type of functional representation of any independent variable. A profile (bandwidth) minimization option is available. The code is limited to implicit time integration for transient solutions. TACO3D has no general mesh generation capability. Rows of evenly-spaced nodes and rows of sequential elements may be generated, but the program relies on separate mesh generators for complex zoning. TACO3D does not have the ability to calculate view factors internally. Graphical representation of data in the form of time history and spatial plots is provided through links to the POSTACO and GRAPE postprocessor codes.
Optoplasmonics: hybridization in 3D
NASA Astrophysics Data System (ADS)
Rosa, L.; Gervinskas, G.; Žukauskas, A.; Malinauskas, M.; Brasselet, E.; Juodkazis, S.
2013-12-01
Femtosecond laser fabrication has been used to make hybrid refractive and di ractive micro-optical elements in photo-polymer SZ2080. For applications in micro- uidics, axicon lenses were fabricated (both single and arrays), for generation of light intensity patterns extending through the entire depth of a typically tens-of-micrometers deep channel. Further hybridisation of an axicon with a plasmonic slot is fabricated and demonstrated nu- merically. Spiralling chiral grooves were inscribed into a 100-nm-thick gold coating sputtered over polymerized micro-axicon lenses, using a focused ion beam. This demonstrates possibility of hybridisation between optical and plasmonic 3D micro-optical elements. Numerical modelling of optical performance by 3D-FDTD method is presented.
3-D Relativistic MHD Simulations
NASA Astrophysics Data System (ADS)
Nishikawa, K.-I.; Frank, J.; Koide, S.; Sakai, J.-I.; Christodoulou, D. M.; Sol, H.; Mutel, R. L.
1998-12-01
We present 3-D numerical simulations of moderately hot, supersonic jets propagating initially along or obliquely to the field lines of a denser magnetized background medium with Lorentz factors of W = 4.56 and evolving in a four-dimensional spacetime. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently in the simulations. This effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure.
Forensic 3D Scene Reconstruction
LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.
1999-10-12
Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.
Forensic 3D scene reconstruction
NASA Astrophysics Data System (ADS)
Little, Charles Q.; Small, Daniel E.; Peters, Ralph R.; Rigdon, J. B.
2000-05-01
Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a fieldable prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.
NASA Astrophysics Data System (ADS)
Song, Yuanhe; Zhao, Hong; Chen, Wenyi; Tan, Yushan
1997-12-01
A new method of 360 degree turning 3D shape measurement in which light sectioning and phase shifting techniques are both used is presented in this paper. A sine light field is applied in the projected light stripe, meanwhile phase shifting technique is used to calculate phases of the light slit. Thereafter wrapped phase distribution of the slit is formed and the unwrapping process is made by means of the height information based on the light sectioning method. Therefore phase measuring results with better precision can be obtained. At last the target 3D shape data can be produced according to geometric relationships between phases and the object heights. The principles of this method are discussed in detail and experimental results are shown in this paper.
3D Printable Graphene Composite.
Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong
2015-01-01
In human being's history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today's personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite's linear thermal coefficient is below 75 ppm·°C(-1) from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process. PMID:26153673
NASA Technical Reports Server (NTRS)
Pizarro, Yaritzmar Rosario; Schuler, Jason M.; Lippitt, Thomas C.
2013-01-01
Dexterous robotic hands are changing the way robots and humans interact and use common tools. Unfortunately, the complexity of the joints and actuations drive up the manufacturing cost. Some cutting edge and commercially available rapid prototyping machines now have the ability to print multiple materials and even combine these materials in the same job. A 3D model of a robotic hand was designed using Creo Parametric 2.0. Combining "hard" and "soft" materials, the model was printed on the Object Connex350 3D printer with the purpose of resembling as much as possible the human appearance and mobility of a real hand while needing no assembly. After printing the prototype, strings where installed as actuators to test mobility. Based on printing materials, the manufacturing cost of the hand was $167, significantly lower than other robotic hands without the actuators since they have more complex assembly processes.
3D light scanning macrography.
Huber, D; Keller, M; Robert, D
2001-08-01
The technique of 3D light scanning macrography permits the non-invasive surface scanning of small specimens at magnifications up to 200x. Obviating both the problem of limited depth of field inherent to conventional close-up macrophotography and the metallic coating required by scanning electron microscopy, 3D light scanning macrography provides three-dimensional digital images of intact specimens without the loss of colour, texture and transparency information. This newly developed technique offers a versatile, portable and cost-efficient method for the non-invasive digital and photographic documentation of small objects. Computer controlled device operation and digital image acquisition facilitate fast and accurate quantitative morphometric investigations, and the technique offers a broad field of research and educational applications in biological, medical and materials sciences. PMID:11489078
Belenkov, E. A. Ali-Pasha, V. A.
2011-01-15
The structure of clusters of some new carbon 3D-graphite phases have been calculated using the molecular-mechanics methods. It is established that 3D-graphite polytypes {alpha}{sub 1,1}, {alpha}{sub 1,3}, {alpha}{sub 1,5}, {alpha}{sub 2,1}, {alpha}{sub 2,3}, {alpha}{sub 3,1}, {beta}{sub 1,2}, {beta}{sub 1,4}, {beta}{sub 1,6}, {beta}{sub 2,1}, and {beta}{sub 3,2} consist of sp{sup 2}-hybridized atoms, have hexagonal unit cells, and differ in regards to the structure of layers and order of their alternation. A possible way to experimentally synthesize new carbon phases is proposed: the polymerization and carbonization of hydrocarbon molecules.
Visual Methods for Model and Grid Validation
NASA Technical Reports Server (NTRS)
Pang, Alex
1998-01-01
This joint research interchange proposal allowed us to contribute in two directions that are of interest to NASA. These are: (a) data level comparative visualization of experimental and computational fluid flow, and (b) visualization tools for analysis of adaptively refined Cartesian grids.
[Real time 3D echocardiography].
Bauer, F; Shiota, T; Thomas, J D
2001-07-01
Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients. PMID:11494630
[Real time 3D echocardiography
NASA Technical Reports Server (NTRS)
Bauer, F.; Shiota, T.; Thomas, J. D.
2001-01-01
Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients.
Breast tumour visualization using 3D quantitative ultrasound methods
NASA Astrophysics Data System (ADS)
Gangeh, Mehrdad J.; Raheem, Abdul; Tadayyon, Hadi; Liu, Simon; Hadizad, Farnoosh; Czarnota, Gregory J.
2016-04-01
Breast cancer is one of the most common cancer types accounting for 29% of all cancer cases. Early detection and treatment has a crucial impact on improving the survival of affected patients. Ultrasound (US) is non-ionizing, portable, inexpensive, and real-time imaging modality for screening and quantifying breast cancer. Due to these attractive attributes, the last decade has witnessed many studies on using quantitative ultrasound (QUS) methods in tissue characterization. However, these studies have mainly been limited to 2-D QUS methods using hand-held US (HHUS) scanners. With the availability of automated breast ultrasound (ABUS) technology, this study is the first to develop 3-D QUS methods for the ABUS visualization of breast tumours. Using an ABUS system, unlike the manual 2-D HHUS device, the whole patient's breast was scanned in an automated manner. The acquired frames were subsequently examined and a region of interest (ROI) was selected in each frame where tumour was identified. Standard 2-D QUS methods were used to compute spectral and backscatter coefficient (BSC) parametric maps on the selected ROIs. Next, the computed 2-D parameters were mapped to a Cartesian 3-D space, interpolated, and rendered to provide a transparent color-coded visualization of the entire breast tumour. Such 3-D visualization can potentially be used for further analysis of the breast tumours in terms of their size and extension. Moreover, the 3-D volumetric scans can be used for tissue characterization and the categorization of breast tumours as benign or malignant by quantifying the computed parametric maps over the whole tumour volume.
3D Hole Inspection Using Lens with High Field Curvature
NASA Astrophysics Data System (ADS)
Zavyalov, Petr
2015-02-01
One of the actual 3D measurement problems is the optical inspection of various holes. In this respect, the task of plane image formation of holes as extended 3D objects using optical methods turns out to be of primary importance. We have developed specialized lenses that perform such transformations due to specially increased aberrations (field curvature, astigmatism) for the formation of extended objects plane images. The calculations of the lens parameters are presented. The detail analysis of the imaging properties was carried out. The presented hole inspection lens has been designed, constructed and used for inspection of the fuel assembly spacer grids.
GPU-Accelerated Denoising in 3D (GD3D)
2013-10-01
The raw computational power GPU Accelerators enables fast denoising of 3D MR images using bilateral filtering, anisotropic diffusion, and non-local means. This software addresses two facets of this promising application: what tuning is necessary to achieve optimal performance on a modern GPU? And what parameters yield the best denoising results in practice? To answer the first question, the software performs an autotuning step to empirically determine optimal memory blocking on the GPU. To answer themore » second, it performs a sweep of algorithm parameters to determine the combination that best reduces the mean squared error relative to a noiseless reference image.« less
Conservative Patch Algorithm and Mesh Sequencing for PAB3D
NASA Technical Reports Server (NTRS)
Pao, S. P.; Abdol-Hamid, K. S.
2005-01-01
A mesh-sequencing algorithm and a conservative patched-grid-interface algorithm (hereafter Patch Algorithm ) have been incorporated into the PAB3D code, which is a computer program that solves the Navier-Stokes equations for the simulation of subsonic, transonic, or supersonic flows surrounding an aircraft or other complex aerodynamic shapes. These algorithms are efficient, flexible, and have added tremendously to the capabilities of PAB3D. The mesh-sequencing algorithm makes it possible to perform preliminary computations using only a fraction of the grid cells (provided the original cell count is divisible by an integer) along any grid coordinate axis, independently of the other axes. The patch algorithm addresses another critical need in multi-block grid situation where the cell faces of adjacent grid blocks may not coincide, leading to errors in calculating fluxes of conserved physical quantities across interfaces between the blocks. The patch algorithm, based on the Stokes integral formulation of the applicable conservation laws, effectively matches each of the interfacial cells on one side of the block interface to the corresponding fractional cell area pieces on the other side. This approach is comprehensive and unified such that all interface topology is automatically processed without user intervention. This algorithm is implemented in a preprocessing code that creates a cell-by-cell database that will maintain flux conservation at any level of full or reduced grid density as the user may choose by way of the mesh-sequencing algorithm. These two algorithms have enhanced the numerical accuracy of the code, reduced the time and effort for grid preprocessing, and provided users with the flexibility of performing computations at any desired full or reduced grid resolution to suit their specific computational requirements.
OVERGRID: A Unified Overset Grid Generation Graphical Interface
NASA Technical Reports Server (NTRS)
Chan, William M.; Akien, Edwin W. (Technical Monitor)
1999-01-01
This paper presents a unified graphical interface and gridding strategy for performing overset grid generation. The interface called OVERGRID has been specifically designed to follow an efficient overset gridding strategy, and contains general grid manipulation capabilities as well as modules that are specifically suited for overset grids. General grid utilities include functions for grid redistribution, smoothing, concatenation, extraction, extrapolation, projection, and many others. Modules specially tailored for overset grids include a seam curve extractor, hyperbolic and algebraic surface grid generators, a hyperbolic volume grid generator, and a Cartesian box grid generator, Grid visualization is achieved using OpenGL while widgets are constructed with Tcl/Tk. The software is portable between various platforms from UNIX workstations to personal computers.
Interactive 3D Mars Visualization
NASA Technical Reports Server (NTRS)
Powell, Mark W.
2012-01-01
The Interactive 3D Mars Visualization system provides high-performance, immersive visualization of satellite and surface vehicle imagery of Mars. The software can be used in mission operations to provide the most accurate position information for the Mars rovers to date. When integrated into the mission data pipeline, this system allows mission planners to view the location of the rover on Mars to 0.01-meter accuracy with respect to satellite imagery, with dynamic updates to incorporate the latest position information. Given this information so early in the planning process, rover drivers are able to plan more accurate drive activities for the rover than ever before, increasing the execution of science activities significantly. Scientifically, this 3D mapping information puts all of the science analyses to date into geologic context on a daily basis instead of weeks or months, as was the norm prior to this contribution. This allows the science planners to judge the efficacy of their previously executed science observations much more efficiently, and achieve greater science return as a result. The Interactive 3D Mars surface view is a Mars terrain browsing software interface that encompasses the entire region of exploration for a Mars surface exploration mission. The view is interactive, allowing the user to pan in any direction by clicking and dragging, or to zoom in or out by scrolling the mouse or touchpad. This set currently includes tools for selecting a point of interest, and a ruler tool for displaying the distance between and positions of two points of interest. The mapping information can be harvested and shared through ubiquitous online mapping tools like Google Mars, NASA WorldWind, and Worldwide Telescope.
NASA Technical Reports Server (NTRS)
2004-01-01
This is a 3-D anaglyph showing a microscopic image taken of an area measuring 3 centimeters (1.2 inches) across on the rock called Adirondack. The image was taken at Gusev Crater on the 33rd day of the Mars Exploration Rover Spirit's journey (Feb. 5, 2004), after the rover used its rock abrasion tool brush to clean the surface of the rock. Dust, which was pushed off to the side during cleaning, can still be seen to the left and in low areas of the rock.
NASA Astrophysics Data System (ADS)
Manos, Harry
2016-03-01
Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the TPT theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity well tailored to specific class lessons. Most of the supplies are readily available in the home or at school: rubbing alcohol, a rag, two colors of spray paint, art brushes, and masking tape. The cost of these supplies, if you don't have them, is less than 20.
NASA Technical Reports Server (NTRS)
2004-01-01
This 3-D cylindrical-perspective mosaic taken by the navigation camera on the Mars Exploration Rover Spirit on sol 82 shows the view south of the large crater dubbed 'Bonneville.' The rover will travel toward the Columbia Hills, seen here at the upper left. The rock dubbed 'Mazatzal' and the hole the rover drilled in to it can be seen at the lower left. The rover's position is referred to as 'Site 22, Position 32.' This image was geometrically corrected to make the horizon appear flat.
NASA Technical Reports Server (NTRS)
2004-01-01
This 3-D image captured by the Mars Exploration Rover Opportunity's rear hazard-identification camera shows the now-empty lander that carried the rover 283 million miles to Meridiani Planum, Mars. Engineers received confirmation that Opportunity's six wheels successfully rolled off the lander and onto martian soil at 3:01 a.m. PST, January 31, 2004, on the seventh martian day, or sol, of the mission. The rover is approximately 1 meter (3 feet) in front of the lander, facing north.
Frequency-Offset Cartesian Feedback Based on Polyphase Difference Amplifiers
Zanchi, Marta G.; Pauly, John M.; Scott, Greig C.
2010-01-01
A modified Cartesian feedback method called “frequency-offset Cartesian feedback” and based on polyphase difference amplifiers is described that significantly reduces the problems associated with quadrature errors and DC-offsets in classic Cartesian feedback power amplifier control systems. In this method, the reference input and feedback signals are down-converted and compared at a low intermediate frequency (IF) instead of at DC. The polyphase difference amplifiers create a complex control bandwidth centered at this low IF, which is typically offset from DC by 200–1500 kHz. Consequently, the loop gain peak does not overlap DC where voltage offsets, drift, and local oscillator leakage create errors. Moreover, quadrature mismatch errors are significantly attenuated in the control bandwidth. Since the polyphase amplifiers selectively amplify the complex signals characterized by a +90° phase relationship representing positive frequency signals, the control system operates somewhat like single sideband (SSB) modulation. However, the approach still allows the same modulation bandwidth control as classic Cartesian feedback. In this paper, the behavior of the polyphase difference amplifier is described through both the results of simulations, based on a theoretical analysis of their architecture, and experiments. We then describe our first printed circuit board prototype of a frequency-offset Cartesian feedback transmitter and its performance in open and closed loop configuration. This approach should be especially useful in magnetic resonance imaging transmit array systems. PMID:20814450
Frequency-Offset Cartesian Feedback Based on Polyphase Difference Amplifiers.
Zanchi, Marta G; Pauly, John M; Scott, Greig C
2010-05-01
A modified Cartesian feedback method called "frequency-offset Cartesian feedback" and based on polyphase difference amplifiers is described that significantly reduces the problems associated with quadrature errors and DC-offsets in classic Cartesian feedback power amplifier control systems.In this method, the reference input and feedback signals are down-converted and compared at a low intermediate frequency (IF) instead of at DC. The polyphase difference amplifiers create a complex control bandwidth centered at this low IF, which is typically offset from DC by 200-1500 kHz. Consequently, the loop gain peak does not overlap DC where voltage offsets, drift, and local oscillator leakage create errors. Moreover, quadrature mismatch errors are significantly attenuated in the control bandwidth. Since the polyphase amplifiers selectively amplify the complex signals characterized by a +90° phase relationship representing positive frequency signals, the control system operates somewhat like single sideband (SSB) modulation. However, the approach still allows the same modulation bandwidth control as classic Cartesian feedback.In this paper, the behavior of the polyphase difference amplifier is described through both the results of simulations, based on a theoretical analysis of their architecture, and experiments. We then describe our first printed circuit board prototype of a frequency-offset Cartesian feedback transmitter and its performance in open and closed loop configuration. This approach should be especially useful in magnetic resonance imaging transmit array systems. PMID:20814450
Quasi-3D Multi-scale Modeling Framework Development
NASA Astrophysics Data System (ADS)
Arakawa, A.; Jung, J.
2008-12-01
When models are truncated in or near an energetically active range of the spectrum, model physics must be changed as the resolution changes. The model physics of GCMs and that of CRMs are, however, quite different from each other and at present there is no unified formulation of model physics that automatically provides transition between these model physics. The Quasi-3D (Q3D) Multi-scale Modeling Framework (MMF) is an attempt to bridge this gap. Like the recently proposed Heterogeneous Multiscale Method (HMM) (E and Engquist 2003), MMF combines a macroscopic model, GCM, and a microscopic model, CRM. Unlike the traditional multiscale methods such as the multi-grid and adapted mesh refinement techniques, HMM and MMF are for solving multi-physics problems. They share the common objective "to design combined macroscopic-microscopic computational methods that are much more efficient than solving the full microscopic model and at the same time give the information we need" (E et al. 2008). The question is then how to meet this objective in practice, which can be highly problem dependent. In HHM, the efficiency is gained typically by localization of the microscale problem. Following the pioneering work by Grabowski and Smolarkiewicz (1999) and Grabowski (2001), MMF takes advantage of the fact that 2D CRMs are reasonably successful in simulating deep clouds. In this approach, the efficiency is gained by sacrificing the three-dimensionality of cloud-scale motion. It also "localizes" the algorithm through embedding a CRM in each GCM grid box using cyclic boundary condition. The Q3D MMF is an attempt to reduce the expense due to these constraints by partially including the cloud-scale 3D effects and extending the CRM beyond individual GCM grid boxes. As currently formulated, the Q3D MMF is a 4D estimation/prediction framework that combines a GCM with a 3D anelastic cloud-resolving vector vorticity equation model (VVM) applied to a network of horizontal grids. The network
Positional Awareness Map 3D (PAM3D)
NASA Technical Reports Server (NTRS)
Hoffman, Monica; Allen, Earl L.; Yount, John W.; Norcross, April Louise
2012-01-01
The Western Aeronautical Test Range of the National Aeronautics and Space Administration s Dryden Flight Research Center needed to address the aging software and hardware of its current situational awareness display application, the Global Real-Time Interactive Map (GRIM). GRIM was initially developed in the late 1980s and executes on older PC architectures using a Linux operating system that is no longer supported. Additionally, the software is difficult to maintain due to its complexity and loss of developer knowledge. It was decided that a replacement application must be developed or acquired in the near future. The replacement must provide the functionality of the original system, the ability to monitor test flight vehicles in real-time, and add improvements such as high resolution imagery and true 3-dimensional capability. This paper will discuss the process of determining the best approach to replace GRIM, and the functionality and capabilities of the first release of the Positional Awareness Map 3D.
3D Printable Graphene Composite
NASA Astrophysics Data System (ADS)
Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong
2015-07-01
In human being’s history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today’s personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite’s linear thermal coefficient is below 75 ppm·°C-1 from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process.
3D acoustic atmospheric tomography
NASA Astrophysics Data System (ADS)
Rogers, Kevin; Finn, Anthony
2014-10-01
This paper presents a method for tomographically reconstructing spatially varying 3D atmospheric temperature profiles and wind velocity fields based. Measurements of the acoustic signature measured onboard a small Unmanned Aerial Vehicle (UAV) are compared to ground-based observations of the same signals. The frequency-shifted signal variations are then used to estimate the acoustic propagation delay between the UAV and the ground microphones, which are also affected by atmospheric temperature and wind speed vectors along each sound ray path. The wind and temperature profiles are modelled as the weighted sum of Radial Basis Functions (RBFs), which also allow local meteorological measurements made at the UAV and ground receivers to supplement any acoustic observations. Tomography is used to provide a full 3D reconstruction/visualisation of the observed atmosphere. The technique offers observational mobility under direct user control and the capacity to monitor hazardous atmospheric environments, otherwise not justifiable on the basis of cost or risk. This paper summarises the tomographic technique and reports on the results of simulations and initial field trials. The technique has practical applications for atmospheric research, sound propagation studies, boundary layer meteorology, air pollution measurements, analysis of wind shear, and wind farm surveys.
Mannoor, Manu S.; Jiang, Ziwen; James, Teena; Kong, Yong Lin; Malatesta, Karen A.; Soboyejo, Winston O.; Verma, Naveen; Gracias, David H.; McAlpine, Michael C.
2013-01-01
The ability to three-dimensionally interweave biological tissue with functional electronics could enable the creation of bionic organs possessing enhanced functionalities over their human counterparts. Conventional electronic devices are inherently two-dimensional, preventing seamless multidimensional integration with synthetic biology, as the processes and materials are very different. Here, we present a novel strategy for overcoming these difficulties via additive manufacturing of biological cells with structural and nanoparticle derived electronic elements. As a proof of concept, we generated a bionic ear via 3D printing of a cell-seeded hydrogel matrix in the precise anatomic geometry of a human ear, along with an intertwined conducting polymer consisting of infused silver nanoparticles. This allowed for in vitro culturing of cartilage tissue around an inductive coil antenna in the ear, which subsequently enables readout of inductively-coupled signals from cochlea-shaped electrodes. The printed ear exhibits enhanced auditory sensing for radio frequency reception, and complementary left and right ears can listen to stereo audio music. Overall, our approach suggests a means to intricately merge biologic and nanoelectronic functionalities via 3D printing. PMID:23635097
3-D Relativistic MHD Simulations
NASA Astrophysics Data System (ADS)
Nishikaw, K.-I.; Frank, J.; Christodoulou, D. M.; Koide, S.; Sakai, J.-I.; Sol, H.; Mutel, R. L.
1998-12-01
We present 3-D numerical simulations of moderately hot, supersonic jets propagating initially along or obliquely to the field lines of a denser magnetized background medium with Lorentz factors of W=4.56 and evolving in a four-dimensional spacetime. The new results are understood as follows: Relativistic simulations have consistently shown that these jets are effectively heavy and so they do not suffer substantial momentum losses and are not decelerated as efficiently as their nonrelativistic counterparts. In addition, the ambient magnetic field, however strong, can be pushed aside with relative ease by the beam, provided that the degrees of freedom associated with all three spatial dimensions are followed self-consistently in the simulations. This effect is analogous to pushing Japanese ``noren'' or vertical Venetian blinds out of the way while the slats are allowed to bend in 3-D space rather than as a 2-D slab structure. We also simulate jets with the more realistic initial conditions for injecting jets for helical mangetic field, perturbed density, velocity, and internal energy, which are supposed to be caused in the process of jet generation. Three possible explanations for the observed variability are (i) tidal disruption of a star falling into the black hole, (ii) instabilities in the relativistic accretion disk, and (iii) jet-related PRocesses. New results will be reported at the meeting.
Mannoor, Manu S; Jiang, Ziwen; James, Teena; Kong, Yong Lin; Malatesta, Karen A; Soboyejo, Winston O; Verma, Naveen; Gracias, David H; McAlpine, Michael C
2013-06-12
The ability to three-dimensionally interweave biological tissue with functional electronics could enable the creation of bionic organs possessing enhanced functionalities over their human counterparts. Conventional electronic devices are inherently two-dimensional, preventing seamless multidimensional integration with synthetic biology, as the processes and materials are very different. Here, we present a novel strategy for overcoming these difficulties via additive manufacturing of biological cells with structural and nanoparticle derived electronic elements. As a proof of concept, we generated a bionic ear via 3D printing of a cell-seeded hydrogel matrix in the anatomic geometry of a human ear, along with an intertwined conducting polymer consisting of infused silver nanoparticles. This allowed for in vitro culturing of cartilage tissue around an inductive coil antenna in the ear, which subsequently enables readout of inductively-coupled signals from cochlea-shaped electrodes. The printed ear exhibits enhanced auditory sensing for radio frequency reception, and complementary left and right ears can listen to stereo audio music. Overall, our approach suggests a means to intricately merge biologic and nanoelectronic functionalities via 3D printing. PMID:23635097
3D Printable Graphene Composite
Wei, Xiaojun; Li, Dong; Jiang, Wei; Gu, Zheming; Wang, Xiaojuan; Zhang, Zengxing; Sun, Zhengzong
2015-01-01
In human being’s history, both the Iron Age and Silicon Age thrived after a matured massive processing technology was developed. Graphene is the most recent superior material which could potentially initialize another new material Age. However, while being exploited to its full extent, conventional processing methods fail to provide a link to today’s personalization tide. New technology should be ushered in. Three-dimensional (3D) printing fills the missing linkage between graphene materials and the digital mainstream. Their alliance could generate additional stream to push the graphene revolution into a new phase. Here we demonstrate for the first time, a graphene composite, with a graphene loading up to 5.6 wt%, can be 3D printable into computer-designed models. The composite’s linear thermal coefficient is below 75 ppm·°C−1 from room temperature to its glass transition temperature (Tg), which is crucial to build minute thermal stress during the printing process. PMID:26153673
3D medical thermography device
NASA Astrophysics Data System (ADS)
Moghadam, Peyman
2015-05-01
In this paper, a novel handheld 3D medical thermography system is introduced. The proposed system consists of a thermal-infrared camera, a color camera and a depth camera rigidly attached in close proximity and mounted on an ergonomic handle. As a practitioner holding the device smoothly moves it around the human body parts, the proposed system generates and builds up a precise 3D thermogram model by incorporating information from each new measurement in real-time. The data is acquired in motion, thus it provides multiple points of view. When processed, these multiple points of view are adaptively combined by taking into account the reliability of each individual measurement which can vary due to a variety of factors such as angle of incidence, distance between the device and the subject and environmental sensor data or other factors influencing a confidence of the thermal-infrared data when captured. Finally, several case studies are presented to support the usability and performance of the proposed system.
3D Ion Temperature Reconstruction
NASA Astrophysics Data System (ADS)
Tanabe, Hiroshi; You, Setthivoine; Balandin, Alexander; Inomoto, Michiaki; Ono, Yasushi
2009-11-01
The TS-4 experiment at the University of Tokyo collides two spheromaks to form a single high-beta compact toroid. Magnetic reconnection during the merging process heats and accelerates the plasma in toroidal and poloidal directions. The reconnection region has a complex 3D topology determined by the pitch of the spheromak magnetic fields at the merging plane. A pair of multichord passive spectroscopic diagnostics have been established to measure the ion temperature and velocity in the reconnection volume. One setup measures spectral lines across a poloidal plane, retrieving velocity and temperature from Abel inversion. The other, novel setup records spectral lines across another section of the plasma and reconstructs velocity and temperature from 3D vector and 2D scalar tomography techniques. The magnetic field linking both measurement planes is determined from in situ magnetic probe arrays. The ion temperature is then estimated within the volume between the two measurement planes and at the reconnection region. The measurement is followed over several repeatable discharges to follow the heating and acceleration process during the merging reconnection.
Larry Lawrence; Bruce Miller
2004-09-01
The Lott Ranch 3D seismic prospect located in Garza County, Texas is a project initiated in September of 1991 by the J.M. Huber Corp., a petroleum exploration and production company. By today's standards the 126 square mile project does not seem monumental, however at the time it was conceived it was the most intensive land 3D project ever attempted. Acquisition began in September of 1991 utilizing GEO-SEISMIC, INC., a seismic data contractor. The field parameters were selected by J.M. Huber, and were of a radical design. The recording instruments used were GeoCor IV amplifiers designed by Geosystems Inc., which record the data in signed bit format. It would not have been practical, if not impossible, to have processed the entire raw volume with the tools available at that time. The end result was a dataset that was thought to have little utility due to difficulties in processing the field data. In 1997, Yates Energy Corp. located in Roswell, New Mexico, formed a partnership to further develop the project. Through discussions and meetings with Pinnacle Seismic, it was determined that the original Lott Ranch 3D volume could be vastly improved upon reprocessing. Pinnacle Seismic had shown the viability of improving field-summed signed bit data on smaller 2D and 3D projects. Yates contracted Pinnacle Seismic Ltd. to perform the reprocessing. This project was initiated with high resolution being a priority. Much of the potential resolution was lost through the initial summing of the field data. Modern computers that are now being utilized have tremendous speed and storage capacities that were cost prohibitive when this data was initially processed. Software updates and capabilities offer a variety of quality control and statics resolution, which are pertinent to the Lott Ranch project. The reprocessing effort was very successful. The resulting processed data-set was then interpreted using modern PC-based interpretation and mapping software. Production data, log data
The program FANS-3D (finite analytic numerical simulation 3-dimensional) and its applications
NASA Technical Reports Server (NTRS)
Bravo, Ramiro H.; Chen, Ching-Jen
1992-01-01
In this study, the program named FANS-3D (Finite Analytic Numerical Simulation-3 Dimensional) is presented. FANS-3D was designed to solve problems of incompressible fluid flow and combined modes of heat transfer. It solves problems with conduction and convection modes of heat transfer in laminar flow, with provisions for radiation and turbulent flows. It can solve singular or conjugate modes of heat transfer. It also solves problems in natural convection, using the Boussinesq approximation. FANS-3D was designed to solve heat transfer problems inside one, two and three dimensional geometries that can be represented by orthogonal planes in a Cartesian coordinate system. It can solve internal and external flows using appropriate boundary conditions such as symmetric, periodic and user specified.
Application of the ASP3D Computer Program to Unsteady Aerodynamic and Aeroelastic Analyses
NASA Technical Reports Server (NTRS)
Batina, John T.
2006-01-01
A new computer program has been developed called ASP3D (Advanced Small Perturbation - 3D), which solves the small perturbation potential flow equation in an advanced form including mass-consistent surface and trailing wake boundary conditions, and entropy, vorticity, and viscous effects. The purpose of the program is for unsteady aerodynamic and aeroelastic analyses, especially in the nonlinear transonic flight regime. The program exploits the simplicity of stationary Cartesian meshes with the movement or deformation of the configuration under consideration incorporated into the solution algorithm through a planar surface boundary condition. The paper presents unsteady aerodynamic and aeroelastic applications of ASP3D to assess the time dependent capability and demonstrate various features of the code.
A Cartesian parametrization for the numerical analysis of material instability
Mota, Alejandro; Chen, Qiushi; Foulk, III, James W.; Ostien, Jakob T.; Lai, Zhengshou
2016-02-25
We examine four parametrizations of the unit sphere in the context of material stability analysis by means of the singularity of the acoustic tensor. We then propose a Cartesian parametrization for vectors that lie a cube of side length two and use these vectors in lieu of unit normals to test for the loss of the ellipticity condition. This parametrization is then used to construct a tensor akin to the acoustic tensor. It is shown that both of these tensors become singular at the same time and in the same planes in the presence of a material instability. Furthermore, themore » performance of the Cartesian parametrization is compared against the other parametrizations, with the results of these comparisons showing that in general, the Cartesian parametrization is more robust and more numerically efficient than the others.« less
A 3-d modular gripper design tool
Brown, R.G.; Brost, R.C.
1997-01-01
Modular fixturing kits are precisely machined sets of components used for flexible, short-turnaround construction of fixtures for a variety of manufacturing purposes. A modular vise is a parallel-jaw vise, where each jaw is a modular fixture plate with a regular grid of precisely positioned holes. A modular vise can be used to locate and hold parts for machining, assembly, and inspection tasks. To fixture a part, one places pins in some of the holes so that when the vise is closed, the part is reliably located and completely constrained. The modular vise concept can be adapted easily to the design of modular parallel-jaw grippers for robots. By attaching a grid plate to each jaw of a parallel-jaw gripper, the authors gain the ability to easily construct high-quality grasps for a wide variety of parts from a standard set of hardware. Wallack and Canny developed a previous algorithm for planning planar grasp configurations for the modular vise. In this paper, the authors expand this work to produce a 3-d fixture/gripper design tool. They describe several analyses added to the planar algorithm to improve its utility, including a three-dimensional grasp quality metric based on geometric and force information, three-dimensional geometric loading analysis, and inter-gripper interference analysis to determine the compatibility of multiple grasps for handing the part from one gripper to another. Finally, the authors describe two applications which combine the utility of modular vise-style grasping with inter-gripper interference: The first is the design of a flexible part-handling subsystem for a part cleaning workcell under development at Sandia National Laboratories; the second is the automatic design of grippers that support the assembly of multiple products on a single assembly line.
Applications of Space-Filling-Curves to Cartesian Methods for CFD
NASA Technical Reports Server (NTRS)
Aftosmis, Michael J.; Berger, Marsha J.; Murman, Scott M.
2003-01-01
The proposed paper presents a variety novel uses of Space-Filling-Curves (SFCs) for Cartesian mesh methods in 0. While these techniques will be demonstrated using non-body-fitted Cartesian meshes, most are applicable on general body-fitted meshes -both structured and unstructured. We demonstrate the use of single O(N log N) SFC-based reordering to produce single-pass (O(N)) algorithms for mesh partitioning, multigrid coarsening, and inter-mesh interpolation. The intermesh interpolation operator has many practical applications including warm starts on modified geometry, or as an inter-grid transfer operator on remeshed regions in moving-body simulations. Exploiting the compact construction of these operators, we further show that these algorithms are highly amenable to parallelization. Examples using the SFC-based mesh partitioner show nearly linear speedup to 512 CPUs even when using multigrid as a smoother. Partition statistics are presented showing that the SFC partitions are, on-average, within 10% of ideal even with only around 50,000 cells in each subdomain. The inter-mesh interpolation operator also has linear asymptotic complexity and can be used to map a solution with N unknowns to another mesh with M unknowns with O(max(M,N)) operations. This capability is demonstrated both on moving-body simulations and in mapping solutions to perturbed meshes for finite-difference-based gradient design methods.
Applications of Space-Filling-Curves to Cartesian Methods for CFD
NASA Technical Reports Server (NTRS)
Aftosmis, M. J.; Murman, S. M.; Berger, M. J.
2003-01-01
This paper presents a variety of novel uses of space-filling-curves (SFCs) for Cartesian mesh methods in CFD. While these techniques will be demonstrated using non-body-fitted Cartesian meshes, many are applicable on general body-fitted meshes-both structured and unstructured. We demonstrate the use of single theta(N log N) SFC-based reordering to produce single-pass (theta(N)) algorithms for mesh partitioning, multigrid coarsening, and inter-mesh interpolation. The intermesh interpolation operator has many practical applications including warm starts on modified geometry, or as an inter-grid transfer operator on remeshed regions in moving-body simulations Exploiting the compact construction of these operators, we further show that these algorithms are highly amenable to parallelization. Examples using the SFC-based mesh partitioner show nearly linear speedup to 640 CPUs even when using multigrid as a smoother. Partition statistics are presented showing that the SFC partitions are, on-average, within 15% of ideal even with only around 50,000 cells in each sub-domain. The inter-mesh interpolation operator also has linear asymptotic complexity and can be used to map a solution with N unknowns to another mesh with M unknowns with theta(M + N) operations. This capability is demonstrated both on moving-body simulations and in mapping solutions to perturbed meshes for control surface deflection or finite-difference-based gradient design methods.
Hybrid Grid Generation Using NW Grid
Jones-Oliveira, Janet B.; Oliveira, Joseph S.; Trease, Lynn L.; Trease, Harold E.; B.K. Soni, J. Hauser, J.F. Thompson, P.R. Eiseman
2000-09-01
We describe the development and use of a hybrid n-dimensional grid generation system called NWGRID. The Applied Mathematics Group at Pacific Northwest National Laboratory (PNNL) is developing this tool to support the Laboratory's computational science efforts in chemistry, biology, engineering and environmental (subsurface and atmospheric) modeling. NWGRID is the grid generation system, which is designed for multi-scale, multi-material, multi-physics, time-dependent, 3-D, hybrid grids that are either statically adapted or evolved in time. NWGRID'S capabilities include static and dynamic grids, hybrid grids, managing colliding surfaces, and grid optimization[using reconnections, smoothing, and adaptive mesh refinement (AMR) algorithms]. NWGRID'S data structure can manage an arbitrary number of grid objects, each with an arbitrary number of grid attributes. NWGRID uses surface geometry to build volumes by using combinations of Boolean operators and order relations. Point distributions can be input, generated using either ray shooting techniques or defined point-by-point. Connectivity matrices are then generated automatically for all variations of hybrid grids.
3D RISM theory with fast reciprocal-space electrostatics
Heil, Jochen; Kast, Stefan M.
2015-03-21
The calculation of electrostatic solute-solvent interactions in 3D RISM (“three-dimensional reference interaction site model”) integral equation theory is recast in a form that allows for a computational treatment analogous to the “particle-mesh Ewald” formalism as used for molecular simulations. In addition, relations that connect 3D RISM correlation functions and interaction potentials with thermodynamic quantities such as the chemical potential and average solute-solvent interaction energy are reformulated in a way that calculations of expensive real-space electrostatic terms on the 3D grid are completely avoided. These methodical enhancements allow for both, a significant speedup particularly for large solute systems and a smoother convergence of predicted thermodynamic quantities with respect to box size, as illustrated for several benchmark systems.
3D RISM theory with fast reciprocal-space electrostatics.
Heil, Jochen; Kast, Stefan M
2015-03-21
The calculation of electrostatic solute-solvent interactions in 3D RISM ("three-dimensional reference interaction site model") integral equation theory is recast in a form that allows for a computational treatment analogous to the "particle-mesh Ewald" formalism as used for molecular simulations. In addition, relations that connect 3D RISM correlation functions and interaction potentials with thermodynamic quantities such as the chemical potential and average solute-solvent interaction energy are reformulated in a way that calculations of expensive real-space electrostatic terms on the 3D grid are completely avoided. These methodical enhancements allow for both, a significant speedup particularly for large solute systems and a smoother convergence of predicted thermodynamic quantities with respect to box size, as illustrated for several benchmark systems. PMID:25796231
Comparison of 2D and 3D gamma analyses
Pulliam, Kiley B.; Huang, Jessie Y.; Howell, Rebecca M.; Followill, David; Kry, Stephen F.; Bosca, Ryan; O’Daniel, Jennifer
2014-02-15
Purpose: As clinics begin to use 3D metrics for intensity-modulated radiation therapy (IMRT) quality assurance, it must be noted that these metrics will often produce results different from those produced by their 2D counterparts. 3D and 2D gamma analyses would be expected to produce different values, in part because of the different search space available. In the present investigation, the authors compared the results of 2D and 3D gamma analysis (where both datasets were generated in the same manner) for clinical treatment plans. Methods: Fifty IMRT plans were selected from the authors’ clinical database, and recalculated using Monte Carlo. Treatment planning system-calculated (“evaluated dose distributions”) and Monte Carlo-recalculated (“reference dose distributions”) dose distributions were compared using 2D and 3D gamma analysis. This analysis was performed using a variety of dose-difference (5%, 3%, 2%, and 1%) and distance-to-agreement (5, 3, 2, and 1 mm) acceptance criteria, low-dose thresholds (5%, 10%, and 15% of the prescription dose), and data grid sizes (1.0, 1.5, and 3.0 mm). Each comparison was evaluated to determine the average 2D and 3D gamma, lower 95th percentile gamma value, and percentage of pixels passing gamma. Results: The average gamma, lower 95th percentile gamma value, and percentage of passing pixels for each acceptance criterion demonstrated better agreement for 3D than for 2D analysis for every plan comparison. The average difference in the percentage of passing pixels between the 2D and 3D analyses with no low-dose threshold ranged from 0.9% to 2.1%. Similarly, using a low-dose threshold resulted in a difference between the mean 2D and 3D results, ranging from 0.8% to 1.5%. The authors observed no appreciable differences in gamma with changes in the data density (constant difference: 0.8% for 2D vs 3D). Conclusions: The authors found that 3D gamma analysis resulted in up to 2.9% more pixels passing than 2D analysis. It must
NASA Astrophysics Data System (ADS)
Khoromskaia, Venera; Khoromskij, Boris N.
2014-12-01
Our recent method for low-rank tensor representation of sums of the arbitrarily positioned electrostatic potentials discretized on a 3D Cartesian grid reduces the 3D tensor summation to operations involving only 1D vectors however retaining the linear complexity scaling in the number of potentials. Here, we introduce and study a novel tensor approach for fast and accurate assembled summation of a large number of lattice-allocated potentials represented on 3D N×N×N grid with the computational requirements only weakly dependent on the number of summed potentials. It is based on the assembled low-rank canonical tensor representations of the collected potentials using pointwise sums of shifted canonical vectors representing the single generating function, say the Newton kernel. For a sum of electrostatic potentials over L×L×L lattice embedded in a box the required storage scales linearly in the 1D grid-size, O(N), while the numerical cost is estimated by O(NL). For periodic boundary conditions, the storage demand remains proportional to the 1D grid-size of a unit cell, n=N/L, while the numerical cost reduces to O(N), that outperforms the FFT-based Ewald-type summation algorithms of complexity O(N3logN). The complexity in the grid parameter N can be reduced even to the logarithmic scale O(logN) by using data-sparse representation of canonical N-vectors via the quantics tensor approximation. For justification, we prove an upper bound on the quantics ranks for the canonical vectors in the overall lattice sum. The presented approach is beneficial in applications which require further functional calculus with the lattice potential, say, scalar product with a function, integration or differentiation, which can be performed easily in tensor arithmetics on large 3D grids with 1D cost. Numerical tests illustrate the performance of the tensor summation method and confirm the estimated bounds on the tensor ranks.
3D Printing of Graphene Aerogels.
Zhang, Qiangqiang; Zhang, Feng; Medarametla, Sai Pradeep; Li, Hui; Zhou, Chi; Lin, Dong
2016-04-01
3D printing of a graphene aerogel with true 3D overhang structures is highlighted. The aerogel is fabricated by combining drop-on-demand 3D printing and freeze casting. The water-based GO ink is ejected and freeze-cast into designed 3D structures. The lightweight (<10 mg cm(-3) ) 3D printed graphene aerogel presents superelastic and high electrical conduction. PMID:26861680
On differential transformations between Cartesian and curvilinear (geodetic) coordinates
NASA Technical Reports Server (NTRS)
Soler, T.
1976-01-01
Differential transformations are developed between Cartesian and curvilinear orthogonal coordinates. Only matrix algebra is used for the presentation of the basic concepts. After defining the reference systems used the rotation (R), metric (H), and Jacobian (J) matrices of the transformations between cartesian and curvilinear coordinate systems are introduced. A value of R as a function of H and J is presented. Likewise an analytical expression for J(-1) as a function of H(-2) and R is obtained. Emphasis is placed on showing that differential equations are equivalent to conventional similarity transformations. Scaling methods are discussed along with ellipsoidal coordinates. Differential transformations between elipsoidal and geodetic coordinates are established.
2012-01-05
ShowMe3D is a data visualization graphical user interface specifically designed for use with hyperspectral image obtained from the Hyperspectral Confocal Microscope. The program allows the user to select and display any single image from a three dimensional hyperspectral image stack. By moving a slider control, the user can easily move between images of the stack. The user can zoom into any region of the image. The user can select any pixel or region from themore » displayed image and display the fluorescence spectrum associated with that pixel or region. The user can define up to 3 spectral filters to apply to the hyperspectral image and view the image as it would appear from a filter-based confocal microscope. The user can also obtain statistics such as intensity average and variance from selected regions.« less
Sinclair, Michael B
2012-01-05
ShowMe3D is a data visualization graphical user interface specifically designed for use with hyperspectral image obtained from the Hyperspectral Confocal Microscope. The program allows the user to select and display any single image from a three dimensional hyperspectral image stack. By moving a slider control, the user can easily move between images of the stack. The user can zoom into any region of the image. The user can select any pixel or region from the displayed image and display the fluorescence spectrum associated with that pixel or region. The user can define up to 3 spectral filters to apply to the hyperspectral image and view the image as it would appear from a filter-based confocal microscope. The user can also obtain statistics such as intensity average and variance from selected regions.
NASA Technical Reports Server (NTRS)
2009-01-01
wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.
The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.
This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.
High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these
NASA Technical Reports Server (NTRS)
1997-01-01
Butler Hine, former director of the Intelligent Mechanism Group (IMG) at Ames Research Center, and five others partnered to start Fourth Planet, Inc., a visualization company that specializes in the intuitive visual representation of dynamic, real-time data over the Internet and Intranet. Over a five-year period, the then NASA researchers performed ten robotic field missions in harsh climes to mimic the end- to-end operations of automated vehicles trekking across another world under control from Earth. The core software technology for these missions was the Virtual Environment Vehicle Interface (VEVI). Fourth Planet has released VEVI4, the fourth generation of the VEVI software, and NetVision. VEVI4 is a cutting-edge computer graphics simulation and remote control applications tool. The NetVision package allows large companies to view and analyze in virtual 3D space such things as the health or performance of their computer network or locate a trouble spot on an electric power grid. Other products are forthcoming. Fourth Planet is currently part of the NASA/Ames Technology Commercialization Center, a business incubator for start-up companies.
Discovering Structural Regularity in 3D Geometry
Pauly, Mark; Mitra, Niloy J.; Wallner, Johannes; Pottmann, Helmut; Guibas, Leonidas J.
2010-01-01
We introduce a computational framework for discovering regular or repeated geometric structures in 3D shapes. We describe and classify possible regular structures and present an effective algorithm for detecting such repeated geometric patterns in point- or mesh-based models. Our method assumes no prior knowledge of the geometry or spatial location of the individual elements that define the pattern. Structure discovery is made possible by a careful analysis of pairwise similarity transformations that reveals prominent lattice structures in a suitable model of transformation space. We introduce an optimization method for detecting such uniform grids specifically designed to deal with outliers and missing elements. This yields a robust algorithm that successfully discovers complex regular structures amidst clutter, noise, and missing geometry. The accuracy of the extracted generating transformations is further improved using a novel simultaneous registration method in the spatial domain. We demonstrate the effectiveness of our algorithm on a variety of examples and show applications to compression, model repair, and geometry synthesis. PMID:21170292
Curvilinear grids for sinuous river channels
NASA Technical Reports Server (NTRS)
Tatom, F. B.; Waldrop, W. R.; Smith, S. R.
1980-01-01
In order to effectively analyze the flow in sinuous river channels, a curvilinear grid system was developed for use in the appropriate hydrodynamic code. The CENTERLINE program was designed to generate a two dimensional grid for this purpose. The Cartesian coordinates of a series of points along the boundaries of the sinuous channel represent the primary input to CENTERLINE. The program calculates the location of the river centerline, the distance downstream along the centerline, and both radius of curvature and channel width as a function of such distance downstream. These parameters form the basis for the generation of the curvilinear grid. Based on input values for longitudinal and lateral grid spacing, the corresponding grid system is generated and a file is created containing the appropriate parameters for use in the associated explicit finite difference hydrodynamic programs. Because of the option for a nonuniform grid, grid spacing can be concentrated in areas containing the largest flow gradients.
Stern, R L; Fraass, B A; Gerhardsson, A; McShan, D L; Lam, K L
1992-01-01
A 3-D radiation therapy treatment planning system calculates dose to an entire volume of points and therefore requires a 3-D distribution of measured dose values for quality assurance and dose calculation verification. To measure such a volumetric distribution with a scanning ion chamber is prohibitively time consuming. A method is presented for the generation of a 3-D grid of dose values based on beam's-eye-view (BEV) film dosimetry. For each field configuration of interest, a set of BEV films at different depths is obtained and digitized, and the optical densities are converted to dose. To reduce inaccuracies associated with film measurement of megavoltage photon depth doses, doses on the different planes are normalized using an ion-chamber measurement of the depth dose. A 3-D grid of dose values is created by interpolation between BEV planes along divergent beam rays. This matrix of measurement-based dose values can then be compared to calculations over the entire volume of interest. This method is demonstrated for three different field configurations. Accuracy of the film-measured dose values is determined by 1-D and 2-D comparisons with ion chamber measurements. Film and ion chamber measurements agree within 2% in the central field regions and within 2.0 mm in the penumbral regions. PMID:1620042
NASA Technical Reports Server (NTRS)
2009-01-01
wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.
The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.
This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.
High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these
Parallel 3D Mortar Element Method for Adaptive Nonconforming Meshes
NASA Technical Reports Server (NTRS)
Feng, Huiyu; Mavriplis, Catherine; VanderWijngaart, Rob; Biswas, Rupak
2004-01-01
High order methods are frequently used in computational simulation for their high accuracy. An efficient way to avoid unnecessary computation in smooth regions of the solution is to use adaptive meshes which employ fine grids only in areas where they are needed. Nonconforming spectral elements allow the grid to be flexibly adjusted to satisfy the computational accuracy requirements. The method is suitable for computational simulations of unsteady problems with very disparate length scales or unsteady moving features, such as heat transfer, fluid dynamics or flame combustion. In this work, we select the Mark Element Method (MEM) to handle the non-conforming interfaces between elements. A new technique is introduced to efficiently implement MEM in 3-D nonconforming meshes. By introducing an "intermediate mortar", the proposed method decomposes the projection between 3-D elements and mortars into two steps. In each step, projection matrices derived in 2-D are used. The two-step method avoids explicitly forming/deriving large projection matrices for 3-D meshes, and also helps to simplify the implementation. This new technique can be used for both h- and p-type adaptation. This method is applied to an unsteady 3-D moving heat source problem. With our new MEM implementation, mesh adaptation is able to efficiently refine the grid near the heat source and coarsen the grid once the heat source passes. The savings in computational work resulting from the dynamic mesh adaptation is demonstrated by the reduction of the the number of elements used and CPU time spent. MEM and mesh adaptation, respectively, bring irregularity and dynamics to the computer memory access pattern. Hence, they provide a good way to gauge the performance of computer systems when running scientific applications whose memory access patterns are irregular and unpredictable. We select a 3-D moving heat source problem as the Unstructured Adaptive (UA) grid benchmark, a new component of the NAS Parallel
Multidimensional discretization of conservation laws for unstructured polyhedral grids
Burton, D.E.
1994-08-22
To the extent possible, a discretized system should satisfy the same conservation laws as the physical system. The author considers the conservation properties of a staggered-grid Lagrange formulation of the hydrodynamics equations (SGH) which is an extension of a ID scheme due to von Neumann and Richtmyer (VNR). The term staggered refers to spatial centering in which position, velocity, and kinetic energy are centered at nodes, while density, pressure, and internal energy are at cell centers. Traditional SGH formulations consider mass, volume, and momentum conservation, but tend to ignore conservation of total energy, conservation of angular momentum, and requirements for thermodynamic reversibility. The author shows that, once the mass and momentum discretizations have been specified, discretization for other quantities are dictated by the conservation laws and cannot be independently defined. The spatial discretization method employs a finite volume procedure that replaces differential operators with surface integrals. The method is appropriate for multidimensional formulations (1D, 2D, 3D) on unstructured grids formed from polygonal (2D) or polyhedral (3D) cells. Conservation equations can then be expressed in conservation form in which conserved currents are exchanged between control volumes. In addition to the surface integrals, the conservation equations include source terms derived from physical sources or geometrical considerations. In Cartesian geometry, mass and momentum are conserved identically. Discussion of volume conservation will be temporarily deferred. The author shows that the momentum equation leads to a form-preserving definition for kinetic energy and to an exactly conservative evolution equation for internal energy. Similarly, the author derives a form-preserving definition and corresponding conservation equation for a zone-centered angular momentum.
VGRIDSG: An unstructured surface grid generation program
NASA Technical Reports Server (NTRS)
Bockelie, Michael J.
1993-01-01
This report contains an overview of the VGRIDSG unstructured surface grid generation program. The VGRIDSG program was created from the VGRID3D unstructured grid generation program developed by Vigyan, Inc. The purpose of this report is to document the changes from the original VGRID3D program and to describe the capabilities of the new program.
3D multiplexed immunoplasmonics microscopy
NASA Astrophysics Data System (ADS)
Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel
2016-07-01
Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed
NIF Ignition Target 3D Point Design
Jones, O; Marinak, M; Milovich, J; Callahan, D
2008-11-05
We have developed an input file for running 3D NIF hohlraums that is optimized such that it can be run in 1-2 days on parallel computers. We have incorporated increasing levels of automation into the 3D input file: (1) Configuration controlled input files; (2) Common file for 2D and 3D, different types of capsules (symcap, etc.); and (3) Can obtain target dimensions, laser pulse, and diagnostics settings automatically from NIF Campaign Management Tool. Using 3D Hydra calculations to investigate different problems: (1) Intrinsic 3D asymmetry; (2) Tolerance to nonideal 3D effects (e.g. laser power balance, pointing errors); and (3) Synthetic diagnostics.
3D multiplexed immunoplasmonics microscopy.
Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel
2016-07-21
Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K(+) channel subunit KV1.1) on human cancer CD44(+) EGFR(+) KV1.1(+) MDA-MB-231 cells and reference CD44(-) EGFR(-) KV1.1(+) 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third
The Cartesian Diver as an Aid for Teaching Respiratory Physiology
ERIC Educational Resources Information Center
Fitch, Greg K.
2004-01-01
The mechanism by which air enters the mammalian lung is difficult for many students of physiology. In particular, some students have trouble seeing how pressure can be transmitted through a fluid such as the intrapleural fluid and how the magnitude of that pressure can change. A Cartesian diver, an old-time child's toy, may be used as a visual aid…
The Cartesian Diver, Surface Tension and the Cheerios Effect
ERIC Educational Resources Information Center
Chen, Chi-Tung; Lee, Wen-Tang; Kao, Sung-Kai
2014-01-01
A Cartesian diver can be used to measure the surface tension of a liquid to a certain extent. The surface tension measurement is related to the two critical pressures at which the diver is about to sink and about to emerge. After sinking because of increasing pressure, the diver is repulsed to the centre of the vessel. After the pressure is…
A Lot of Good Physics in the Cartesian Diver
ERIC Educational Resources Information Center
De Luca, Roberto; Ganci, Salvatore
2011-01-01
The Cartesian diver experiment certainly occupies a place of honour in old physics textbooks as a vivid demonstration of Archimedes' buoyancy. The original experiment, as described in old textbooks, shows Archimedes buoyancy qualitatively: when the increased weight of the diver is not counterbalanced by Archimedes' buoyancy, the diver sinks. When…
NASA Astrophysics Data System (ADS)
Hermanns, Maria
The Kitaev honeycomb model has become one of the archetypal spin models exhibiting topological phases of matter, where the magnetic moments fractionalize into Majorana fermions interacting with a Z2 gauge field. In this talk, we discuss generalizations of this model to three-dimensional lattice structures. Our main focus is the metallic state that the emergent Majorana fermions form. In particular, we discuss the relation of the nature of this Majorana metal to the details of the underlying lattice structure. Besides (almost) conventional metals with a Majorana Fermi surface, one also finds various realizations of Dirac semi-metals, where the gapless modes form Fermi lines or even Weyl nodes. We introduce a general classification of these gapless quantum spin liquids using projective symmetry analysis. Furthermore, we briefly outline why these Majorana metals in 3D Kitaev systems provide an even richer variety of Dirac and Weyl phases than possible for electronic matter and comment on possible experimental signatures. Work done in collaboration with Kevin O'Brien and Simon Trebst.
NASA Technical Reports Server (NTRS)
1997-01-01
Yogi, a rock taller than rover Sojourner, is the subject of this image, taken in stereo by the deployed Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. The soil in the foreground has been the location of multiple soil mechanics experiments performed by Sojourner's cleated wheels. Pathfinder scientists were able to control the force inflicted on the soil beneath the rover's wheels, giving them insight into the soil's mechanical properties. The soil mechanics experiments were conducted after this image was taken.
Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.
Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right
NASA Astrophysics Data System (ADS)
Mahjoubfar, A.; Goda, K.; Wang, C.; Fard, A.; Adam, J.; Gossett, D. R.; Ayazi, A.; Sollier, E.; Malik, O.; Chen, E.; Liu, Y.; Brown, R.; Sarkhosh, N.; Di Carlo, D.; Jalali, B.
2013-03-01
Laser scanners are essential for scientific research, manufacturing, defense, and medical practice. Unfortunately, often times the speed of conventional laser scanners (e.g., galvanometric mirrors and acousto-optic deflectors) falls short for many applications, resulting in motion blur and failure to capture fast transient information. Here, we present a novel type of laser scanner that offers roughly three orders of magnitude higher scan rates than conventional methods. Our laser scanner, which we refer to as the hybrid dispersion laser scanner, performs inertia-free laser scanning by dispersing a train of broadband pulses both temporally and spatially. More specifically, each broadband pulse is temporally processed by time stretch dispersive Fourier transform and further dispersed into space by one or more diffractive elements such as prisms and gratings. As a proof-of-principle demonstration, we perform 1D line scans at a record high scan rate of 91 MHz and 2D raster scans and 3D volumetric scans at an unprecedented scan rate of 105 kHz. The method holds promise for a broad range of scientific, industrial, and biomedical applications. To show the utility of our method, we demonstrate imaging, nanometer-resolved surface vibrometry, and high-precision flow cytometry with real-time throughput that conventional laser scanners cannot offer due to their low scan rates.
Crowdsourcing Based 3d Modeling
NASA Astrophysics Data System (ADS)
Somogyi, A.; Barsi, A.; Molnar, B.; Lovas, T.
2016-06-01
Web-based photo albums that support organizing and viewing the users' images are widely used. These services provide a convenient solution for storing, editing and sharing images. In many cases, the users attach geotags to the images in order to enable using them e.g. in location based applications on social networks. Our paper discusses a procedure that collects open access images from a site frequently visited by tourists. Geotagged pictures showing the image of a sight or tourist attraction are selected and processed in photogrammetric processing software that produces the 3D model of the captured object. For the particular investigation we selected three attractions in Budapest. To assess the geometrical accuracy, we used laser scanner and DSLR as well as smart phone photography to derive reference values to enable verifying the spatial model obtained from the web-album images. The investigation shows how detailed and accurate models could be derived applying photogrammetric processing software, simply by using images of the community, without visiting the site.
3D multiplexed immunoplasmonics microscopy
NASA Astrophysics Data System (ADS)
Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel
2016-07-01
Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed
Recent Progress on the Parallel Implementation of Moving-Body Overset Grid Schemes
NASA Technical Reports Server (NTRS)
Wissink, Andrew; Allen, Edwin (Technical Monitor)
1998-01-01
Viscous calculations about geometrically complex bodies in which there is relative motion between component parts is one of the most computationally demanding problems facing CFD researchers today. This presentation documents results from the first two years of a CHSSI-funded effort within the U.S. Army AFDD to develop scalable dynamic overset grid methods for unsteady viscous calculations with moving-body problems. The first pan of the presentation will focus on results from OVERFLOW-D1, a parallelized moving-body overset grid scheme that employs traditional Chimera methodology. The two processes that dominate the cost of such problems are the flow solution on each component and the intergrid connectivity solution. Parallel implementations of the OVERFLOW flow solver and DCF3D connectivity software are coupled with a proposed two-part static-dynamic load balancing scheme and tested on the IBM SP and Cray T3E multi-processors. The second part of the presentation will cover some recent results from OVERFLOW-D2, a new flow solver that employs Cartesian grids with various levels of refinement, facilitating solution adaption. A study of the parallel performance of the scheme on large distributed- memory multiprocessor computer architectures will be reported.
MOM3D/EM-ANIMATE - MOM3D WITH ANIMATION CODE
NASA Technical Reports Server (NTRS)
Shaeffer, J. F.
1994-01-01
compare surface-current distribution due to various initial excitation directions or electric field orientations. The program can accept up to 50 planes of field data consisting of a grid of 100 by 100 field points. These planes of data are user selectable and can be viewed individually or concurrently. With these preset limits, the program requires 55 megabytes of core memory to run. These limits can be changed in the header files to accommodate the available core memory of an individual workstation. An estimate of memory required can be made as follows: approximate memory in bytes equals (number of nodes times number of surfaces times 14 variables times bytes per word, typically 4 bytes per floating point) plus (number of field planes times number of nodes per plane times 21 variables times bytes per word). This gives the approximate memory size required to store the field and surface-current data. The total memory size is approximately 400,000 bytes plus the data memory size. The animation calculations are performed in real time at any user set time step. For Silicon Graphics Workstations that have multiple processors, this program has been optimized to perform these calculations on multiple processors to increase animation rates. The optimized program uses the SGI PFA (Power FORTRAN Accelerator) library. On single processor machines, the parallelization directives are seen as comments to the program and will have no effect on compilation or execution. MOM3D and EM-ANIMATE are written in FORTRAN 77 for interactive or batch execution on SGI series computers running IRIX 3.0 or later. The RAM requirements for these programs vary with the size of the problem being solved. A minimum of 30Mb of RAM is required for execution of EM-ANIMATE; however, the code may be modified to accommodate the available memory of an individual workstation. For EM-ANIMATE, twenty-four bit, double-buffered color capability is suggested, but not required. Sample executables and sample input and
Web-Enabled 3D Game Playing for Looped Knight's Tour
NASA Astrophysics Data System (ADS)
Lum, Gregory C. L.; Yun, David Y. Y.
This paper elucidates the development of a 3D graphics display environment that facilitates the finding of a closed Loop Knight’s Tour (LKT) that uniquely covers each grid in a 3D rectangular box. When LKT is played as a solitaire game in 3D space, it is not only mentally challenging but also difficult for the player to visualize the current or past (occupied) positions and to consider any follow-on possibilities (open grids). These graphic facilities simplify the visualization the global box as occupied and open grids and allow the convenient examination of the sequential chain of knight’s moves. Relevant information and valuable relations are computed and displayed to assist the player in choosing the next grid to occupy and closing the ends to form a loop. This graphic game environment is Web enabled via Google’s SketchUp. An online community may be developed as users challenge one another by increasingly difficult configurations.
3D Stratigraphic Modeling of Central Aachen
NASA Astrophysics Data System (ADS)
Dong, M.; Neukum, C.; Azzam, R.; Hu, H.
2010-05-01
, -y, -z coordinates, down-hole depth, and stratigraphic information are available. 4) We grouped stratigraphic units into four main layers based on analysis of geological settings of the modeling area. The stratigraphic units extend from Quaternary, Cretaceous, Carboniferous to Devonian. In order to facilitate the determination of each unit boundaries, a series of standard code was used to integrate data with different descriptive attributes. 5) The Quaternary and Cretaceous units are characterized by subhorizontal layers. Kriging interpolation was processed to the borehole data in order to estimate data distribution and surface relief for the layers. 6) The Carboniferous and Devonian units are folded. The lack of software support, concerning simulating folds and the shallow depth of boreholes and cross sections constrained the determination of geological boundaries. A strategy of digitalizing the fold surfaces from cross sections and establishing them as inclined strata was followed. The modeling was simply subdivided into two steps. The first step consisted of importing data into the modeling software. The second step involved the construction of subhorizontal layers and folds, which were constrained by geological maps, cross sections and outcrops. The construction of the 3D stratigraphic model is of high relevance to further simulation and application, such as 1) lithological modeling; 2) answering simple questions such as "At which unit is the water table?" and calculating volume of groundwater storage during assessment of aquifer vulnerability to contamination; and 3) assigned by geotechnical properties in grids and providing them for user required application. Acknowledgements: Borehole data is kindly provided by the Municipality of Aachen. References: 1. Janet T. Watt, Jonathan M.G. Glen, David A. John and David A. Ponce (2007) Three-dimensional geologic model of the northern Nevada rift and the Beowawe geothermal system, north-central Nevada. Geosphere, v. 3
Incorporation of 3D Shortwave Radiative Effects within the Weather Research and Forecasting Model
O'Hirok, W.; Ricchiazzi, P.; Gautier, C.
2005-03-18
A principal goal of the Atmospheric Radiation Measurement (ARM) Program is to understand the 3D cloud-radiation problem from scales ranging from the local to the size of global climate model (GCM) grid squares. For climate models using typical cloud overlap schemes, 3D radiative effects are minimal for all but the most complicated cloud fields. However, with the introduction of ''superparameterization'' methods, where sub-grid cloud processes are accounted for by embedding high resolution 2D cloud system resolving models within a GCM grid cell, the impact of 3D radiative effects on the local scale becomes increasingly relevant (Randall et al. 2003). In a recent study, we examined this issue by comparing the heating rates produced from a 3D and 1D shortwave radiative transfer model for a variety of radar derived cloud fields (O'Hirok and Gautier 2005). As demonstrated in Figure 1, the heating rate differences for a large convective field can be significant where 3D effects produce areas o f intense local heating. This finding, however, does not address the more important question of whether 3D radiative effects can alter the dynamics and structure of a cloud field. To investigate that issue we have incorporated a 3D radiative transfer algorithm into the Weather Research and Forecasting (WRF) model. Here, we present very preliminary findings of a comparison between cloud fields generated from a high resolution non-hydrostatic mesoscale numerical weather model using 1D and 3D radiative transfer codes.
Structured and unstructured grid generation.
Thompson, J F; Weatherill, N P
1992-01-01
Current techniques in composite-block-structured grid generation and unstructured grid generation for general 3D geometries are summarized, including both algebraic and elliptic generation procedures for the former and Delaunay tessellations for the latter. Citations of relevant theory are given. Examples of applications for several geometries are included. PMID:1424687
3-D Cavern Enlargement Analyses
EHGARTNER, BRIAN L.; SOBOLIK, STEVEN R.
2002-03-01
Three-dimensional finite element analyses simulate the mechanical response of enlarging existing caverns at the Strategic Petroleum Reserve (SPR). The caverns are located in Gulf Coast salt domes and are enlarged by leaching during oil drawdowns as fresh water is injected to displace the crude oil from the caverns. The current criteria adopted by the SPR limits cavern usage to 5 drawdowns (leaches). As a base case, 5 leaches were modeled over a 25 year period to roughly double the volume of a 19 cavern field. Thirteen additional leaches where then simulated until caverns approached coalescence. The cavern field approximated the geometries and geologic properties found at the West Hackberry site. This enabled comparisons are data collected over nearly 20 years to analysis predictions. The analyses closely predicted the measured surface subsidence and cavern closure rates as inferred from historic well head pressures. This provided the necessary assurance that the model displacements, strains, and stresses are accurate. However, the cavern field has not yet experienced the large scale drawdowns being simulated. Should they occur in the future, code predictions should be validated with actual field behavior at that time. The simulations were performed using JAS3D, a three dimensional finite element analysis code for nonlinear quasi-static solids. The results examine the impacts of leaching and cavern workovers, where internal cavern pressures are reduced, on surface subsidence, well integrity, and cavern stability. The results suggest that the current limit of 5 oil drawdowns may be extended with some mitigative action required on the wells and later on to surface structure due to subsidence strains. The predicted stress state in the salt shows damage to start occurring after 15 drawdowns with significant failure occurring at the 16th drawdown, well beyond the current limit of 5 drawdowns.
Imaging a Sustainable Future in 3D
NASA Astrophysics Data System (ADS)
Schuhr, W.; Lee, J. D.; Kanngieser, E.
2012-07-01
It is the intention of this paper, to contribute to a sustainable future by providing objective object information based on 3D photography as well as promoting 3D photography not only for scientists, but also for amateurs. Due to the presentation of this article by CIPA Task Group 3 on "3D Photographs in Cultural Heritage", the presented samples are masterpieces of historic as well as of current 3D photography concentrating on cultural heritage. In addition to a report on exemplarily access to international archives of 3D photographs, samples for new 3D photographs taken with modern 3D cameras, as well as by means of a ground based high resolution XLITE staff camera and also 3D photographs taken from a captive balloon and the use of civil drone platforms are dealt with. To advise on optimum suited 3D methodology, as well as to catch new trends in 3D, an updated synoptic overview of the 3D visualization technology, even claiming completeness, has been carried out as a result of a systematic survey. In this respect, e.g., today's lasered crystals might be "early bird" products in 3D, which, due to lack in resolution, contrast and color, remember to the stage of the invention of photography.
Teaching Geography with 3-D Visualization Technology
ERIC Educational Resources Information Center
Anthamatten, Peter; Ziegler, Susy S.
2006-01-01
Technology that helps students view images in three dimensions (3-D) can support a broad range of learning styles. "Geo-Wall systems" are visualization tools that allow scientists, teachers, and students to project stereographic images and view them in 3-D. We developed and presented 3-D visualization exercises in several undergraduate courses.…
3D Printing and Its Urologic Applications
Soliman, Youssef; Feibus, Allison H; Baum, Neil
2015-01-01
3D printing is the development of 3D objects via an additive process in which successive layers of material are applied under computer control. This article discusses 3D printing, with an emphasis on its historical context and its potential use in the field of urology. PMID:26028997
3D Flow Visualization Using Texture Advection
NASA Technical Reports Server (NTRS)
Kao, David; Zhang, Bing; Kim, Kwansik; Pang, Alex; Moran, Pat (Technical Monitor)
2001-01-01
Texture advection is an effective tool for animating and investigating 2D flows. In this paper, we discuss how this technique can be extended to 3D flows. In particular, we examine the use of 3D and 4D textures on 3D synthetic and computational fluid dynamics flow fields.
3D Elastic Seismic Wave Propagation Code
1998-09-23
E3D is capable of simulating seismic wave propagation in a 3D heterogeneous earth. Seismic waves are initiated by earthquake, explosive, and/or other sources. These waves propagate through a 3D geologic model, and are simulated as synthetic seismograms or other graphical output.
3D Printing and Its Urologic Applications.
Soliman, Youssef; Feibus, Allison H; Baum, Neil
2015-01-01
3D printing is the development of 3D objects via an additive process in which successive layers of material are applied under computer control. This article discusses 3D printing, with an emphasis on its historical context and its potential use in the field of urology. PMID:26028997
Maldonado, B.; Hussein, H.S.
1994-12-31
Due to the rectilinear nature of the previous 3D seismic survey, the details necessary for proper interpretation were absent. Theoretically, concentric 3D seismic technology may provide an avenue for gaining more and higher quality data coverage. Problems associated with recording a rectilinear 3D seismic grid over the salt dome in this area have created the need to investigate the use of such procedures as the concentric-circle 3D seismic acquisition technique. The difficulty of imaging salt dome flanks with conventional rectilinear 3D seismic may be a result of the inability to precisely predict the lateral velocity-field variation adjacent to both salt and sediments. The dramatic difference in the interval velocities of salt and sediments causes the returning ray to severely deviate from being a hyperbolic path. This hampers the ability to predict imaging points near the salt/sediment interface. Perhaps the most difficult areas to image with rectilinear seismic surveys are underneath salt overhangs. Modeling suggests that a significant increase in the number of rays captured from beneath a salt overhang can be achieved with the concentric-circle method. This paper demonstrates the use of the ``circle shoot`` on a survey conducted over a salt dome in the Gulf of Mexico. A total of 80 concentric circles cover an area which is equivalent to 31,000 acres. The final post-stack data were sorted into bins with dimensions of 25 meters by 25 meters. A comparison of 3D rectilinear shooting vs. 3D concentric circle shooting over the same area will show an improvement in data quality and signal-to-noise characteristics.
3-D Perspective Pasadena, California
NASA Technical Reports Server (NTRS)
2000-01-01
This perspective view shows the western part of the city of Pasadena, California, looking north towards the San Gabriel Mountains. Portions of the cities of Altadena and La Canada, Flintridge are also shown. The image was created from three datasets: the Shuttle Radar Topography Mission (SRTM) supplied the elevation data; Landsat data from November 11, 1986 provided the land surface color (not the sky) and U.S. Geological Survey digital aerial photography provides the image detail. The Rose Bowl, surrounded by a golf course, is the circular feature at the bottom center of the image. The Jet Propulsion Laboratory is the cluster of large buildings north of the Rose Bowl at the base of the mountains. A large landfill, Scholl Canyon, is the smooth area in the lower left corner of the scene. This image shows the power of combining data from different sources to create planning tools to study problems that affect large urban areas. In addition to the well-known earthquake hazards, Southern California is affected by a natural cycle of fire and mudflows. Wildfires strip the mountains of vegetation, increasing the hazards from flooding and mudflows for several years afterwards. Data such as shown on this image can be used to predict both how wildfires will spread over the terrain and also how mudflows will be channeled down the canyons. The Shuttle Radar Topography Mission (SRTM), launched on February 11, 2000, uses the same radar instrument that comprised the Spaceborne Imaging Radar-C/X-Band Synthetic Aperture Radar (SIR-C/X-SAR) that flew twice on the Space Shuttle Endeavour in 1994. The mission was designed to collect three dimensional measurements of the Earth's surface. To collect the 3-D data, engineers added a 60-meter-long (200-foot) mast, an additional C-band imaging antenna and improved tracking and navigation devices. The mission is a cooperative project between the National Aeronautics and Space Administration (NASA), the National Imagery and Mapping Agency
An overset grid method for global geomagnetic induction
NASA Astrophysics Data System (ADS)
Weiss, Chester J.
2014-07-01
A new finite difference solution to the global geomagnetic induction problem is developed and tested, based on a modified Lorenz gauge of the magnetic vector and electric scalar potentials and implementing a novel, overset `Yin-Yang' grid that avoids unnecessary mesh refinement at the geographic poles. Previously used in whole-earth mantle convection models, the overset grid is built from a pair of partially overlapping mid-latitude latitude-longitude (lat/lon) grids, one of which is rotated with respect to the other for complete coverage of the sphere. Because of this symmetry, only one set of finite difference templates is required for global discretization of the governing Maxwell equations, a redundancy that is exploited for computational efficiency and multithreaded parallelization. Comparisons between solutions obtained by the proposed method show excellent agreement with those obtained by independent integral equation methods for 1-D, 2-D and 3-D problem geometries. The computational footprint of the method is minimized through a (non-symmetric) matrix-free BiCG-STAB iterative solver which computes finite difference matrix coefficients `on the fly' as needed, rather than pulling stored values from memory. Scaling of the matrix-free BiCG-STAB algorithm with problem size shows behaviour similar to that seen with the (symmetric) QMR algorithm used in the Cartesian case from which the present algorithm is based. The proposed method may therefore provide a competitive addition to the existing body of global-scale geomagnetic induction modelling algorithms, allowing for resource-efficient forward modelling as the kernel for large-scale computing such as inversion of geomagnetic response functions, computational hypothesis testing and parametric studies of mantle geodynamics and physiochemical state.
The Esri 3D city information model
NASA Astrophysics Data System (ADS)
Reitz, T.; Schubiger-Banz, S.
2014-02-01
With residential and commercial space becoming increasingly scarce, cities are going vertical. Managing the urban environments in 3D is an increasingly important and complex undertaking. To help solving this problem, Esri has released the ArcGIS for 3D Cities solution. The ArcGIS for 3D Cities solution provides the information model, tools and apps for creating, analyzing and maintaining a 3D city using the ArcGIS platform. This paper presents an overview of the 3D City Information Model and some sample use cases.
3-D Spherical modelling of the thermo-chemical evolution of Venus
NASA Astrophysics Data System (ADS)
Armann, M.; Tackley, P. J.
2009-04-01
-consistent melting criterion, which also allows outgassing and trace element partitioning to be tracked [10][11], as well as the mean age of the crust. Phase transitions in both the olivine system and pyroxene-garnet system are included. The concentration of heat-producing elements is assumed to be the same as in bulk silicate Earth and decreases with time, and cooling of the core is tracked using a parameterised core heat balance. Geoid and surface topography are calculated using a self-gravitating formulation. Thus, the model constitutes an attempt to incorporate as much realism as is presently feasible in global-scale 3-D spherical simulations. Simulations are performed using StagYY, which uses a finite volume multigrid solver on the Yin-Yang spherical grid [12], and is developed from the earlier cartesian Stag3D [13]. We are running a systematic suite of simulations varying uncertain properties and parameters related to rheology, melting & eruption, and initial condition, and compare model results to observations of surface topography, geoid, mean surface age and distribution of surface ages, crustal deformation rates in the last part of the evolution (e.g., [14]), crustal thickness, and the time evolution of heat flux through the CMB. Of particular interest is whether a smooth evolution can satisfy the various observational constraints, or whether episodic or catastrophic behaviour is needed, as has been hypothesised by some authors. Simulations in which the lithosphere remains stagnant over the entire history indicate that over time, the crust becomes at least as thick as the mechanical lithosphere, and delamination occurs from its base. The dominant heat transport mechanism is magmatic. A thick crust is a quite robust feature of these calculations. Higher mantle viscosity results in larger topographic variations, thicker crust and lithosphere and higher admittance ratios; to match those of Venus, the upper mantle reference viscosity is about 1020 Pa s and internal convection
3-D Spherical modelling of the thermo-chemical evolution of Venus' mantle and crust
NASA Astrophysics Data System (ADS)
Armann, M.; Tackley, P. J.
2008-09-01
the resulting differentiation of the crust and mantle are modelled using a self-consistent melting criterion, which also allows outgassing and trace element partitioning to be tracked [10][11], as well as the mean age of the crust. Phase transitions in both the olivine system and pyroxene-garnet system are included. The concentration of heat-producing elements is assumed to be the same as in bulk silicate Earth and decreases with time, and cooling of the core is tracked using a parameterised core heat balance. Geoid and surface topography are calculated using a self-gravitating formulation. Thus, the model constitutes an attempt to incorporate as much realism as is presently feasible in global-scale 3-D spherical simulations. Simulations are performed using StagYY, which uses a finite volume multigrid solver on the Yin-Yang spherical grid [12], and is developed from the earlier cartesian Stag3D [13]. Analysis We are performing a systematic suite of simulations varying uncertain properties and parameters, related to rheology, melting+eruption, and initial condition, and compare model results to observations of: • Surface topography. This includes the general (qualitative) distribution of highlands and lowlands, the hypsometric distribution, and the lateral spectrum. • Geoid. The spectrum and amplitude of the geoid, the extent to which is is correlated with topography, and admittance ratios. These have previously been used to argue for a thick lithosphere and lack of asthenosphere, but are non-unique, so it may well be possible to produce the observed signatures in other ways, in a selfconsistent convection calculation. • The mean surface age, meaning the time since the basalt was erupted, and the statistical distribution of surface ages. This will be compared to constraints from crater statistics and from geomorphological interpretations. • Crustal deformation rates in the last part of the evolution (e.g., [14]). • The mean crustal thickness, although this is
Case study: Beauty and the Beast 3D: benefits of 3D viewing for 2D to 3D conversion
NASA Astrophysics Data System (ADS)
Handy Turner, Tara
2010-02-01
From the earliest stages of the Beauty and the Beast 3D conversion project, the advantages of accurate desk-side 3D viewing was evident. While designing and testing the 2D to 3D conversion process, the engineering team at Walt Disney Animation Studios proposed a 3D viewing configuration that not only allowed artists to "compose" stereoscopic 3D but also improved efficiency by allowing artists to instantly detect which image features were essential to the stereoscopic appeal of a shot and which features had minimal or even negative impact. At a time when few commercial 3D monitors were available and few software packages provided 3D desk-side output, the team designed their own prototype devices and collaborated with vendors to create a "3D composing" workstation. This paper outlines the display technologies explored, final choices made for Beauty and the Beast 3D, wish-lists for future development and a few rules of thumb for composing compelling 2D to 3D conversions.
3D Simulations of the Beehive Proplyd
NASA Astrophysics Data System (ADS)
Feitosa, J. A.; Vasconcelos, M. J.; Cerqueira, A. H.
2014-10-01
Some star formation regions, like the Orion nebula, have stars of different masses, from massive stars, responsible for strong ionizing winds and HII regions, to low-mass stars, which spend a long time in the protostellar phase, and are frequently associated with protostellar disks and jets. Massive O or B stars emit a great deal of UV radiation, able to dissociate the hydrogen molecule (FUV radiation, energies between 6-13 eV), to ionize the atomic hydrogen (EUV radiation, energies greater than 13.6 eV) and heat the gas. Around these stars, a large and hot (10^{4}K) region is formed, known as HII region. T-Tauri stars inside HII regions produce a type of young stellar object, a proplyd, described with accuracy in O'Dell et al. (1993). Proplyds exhibit a cometary shape from which we can distinguish a central low-mass star with an accretion disk, an ionization front, a photodissociation region and, sometimes, an external bow shock and a protostellar jet. Its morphological characteristics depends on the distance between the low-mass star and the source of the ionizing radiation. The Beehive, a giant proplyd in Orion Nebula, has attracted attention due to its exotic system of rings coaxial to the HH540 jet's axis. Bally et al. (2005) suggested that the rings are perturbations due to the crossing of the ionization front by the jet. In this work, we test this hypothesis making 3D hydrodynamic numerical simulations over an adaptive grid, using the Yguazú-A code (Raga et al., 2000), properly adapted for the Beehive conditions. Our results show that the jet causes a perturbation in the ionization front of the proplyd, but is necessary to adjust carefully some parameters of the jet like its velocity and ejection frequency in order to have the results matching the observations.
3D laptop for defense applications
NASA Astrophysics Data System (ADS)
Edmondson, Richard; Chenault, David
2012-06-01
Polaris Sensor Technologies has developed numerous 3D display systems using a US Army patented approach. These displays have been developed as prototypes for handheld controllers for robotic systems and closed hatch driving, and as part of a TALON robot upgrade for 3D vision, providing depth perception for the operator for improved manipulation and hazard avoidance. In this paper we discuss the prototype rugged 3D laptop computer and its applications to defense missions. The prototype 3D laptop combines full temporal and spatial resolution display with the rugged Amrel laptop computer. The display is viewed through protective passive polarized eyewear, and allows combined 2D and 3D content. Uses include robot tele-operation with live 3D video or synthetically rendered scenery, mission planning and rehearsal, enhanced 3D data interpretation, and simulation.
Tensorial analysis of Eshelby stresses in 3D supercooled liquids
NASA Astrophysics Data System (ADS)
Lemaître, Anaël
2015-10-01
It was recently proposed that the local rearrangements governing relaxation in supercooled liquids impress on the liquid medium long-ranged (Eshelby) stress fluctuations that accumulate over time. From this viewpoint, events must be characterized by elastic dipoles, which are second order tensors, and Eshelby fields are expected to show up in stress and stress increment correlations, which are fourth order tensor fields. We construct here an analytical framework that permits analyzing such tensorial correlations in isotropic media in view of accessing Eshelby fields. Two spherical bases are introduced, which correspond to Cartesian and spherical coordinates for tensors. We show how they can be used to decompose stress correlations and thus test such properties as isotropy and power-law scalings. Eshelby fields and the predicted stress correlations in an infinite medium are shown to belong to an algebra that can conveniently be described using the spherical tensor bases. Using this formalism, we demonstrate that the inherent stress field of 3D supercooled liquids is power law correlated and carries the signature of Eshelby fields, thus supporting the idea that relaxation events give rise to Eshelby stresses that accumulate over time.
Tensorial analysis of Eshelby stresses in 3D supercooled liquids.
Lemaître, Anaël
2015-10-28
It was recently proposed that the local rearrangements governing relaxation in supercooled liquids impress on the liquid medium long-ranged (Eshelby) stress fluctuations that accumulate over time. From this viewpoint, events must be characterized by elastic dipoles, which are second order tensors, and Eshelby fields are expected to show up in stress and stress increment correlations, which are fourth order tensor fields. We construct here an analytical framework that permits analyzing such tensorial correlations in isotropic media in view of accessing Eshelby fields. Two spherical bases are introduced, which correspond to Cartesian and spherical coordinates for tensors. We show how they can be used to decompose stress correlations and thus test such properties as isotropy and power-law scalings. Eshelby fields and the predicted stress correlations in an infinite medium are shown to belong to an algebra that can conveniently be described using the spherical tensor bases. Using this formalism, we demonstrate that the inherent stress field of 3D supercooled liquids is power law correlated and carries the signature of Eshelby fields, thus supporting the idea that relaxation events give rise to Eshelby stresses that accumulate over time. PMID:26520535
A 3D visualization system for molecular structures
NASA Technical Reports Server (NTRS)
Green, Terry J.
1989-01-01
The properties of molecules derive in part from their structures. Because of the importance of understanding molecular structures various methodologies, ranging from first principles to empirical technique, were developed for computing the structure of molecules. For large molecules such as polymer model compounds, the structural information is difficult to comprehend by examining tabulated data. Therefore, a molecular graphics display system, called MOLDS, was developed to help interpret the data. MOLDS is a menu-driven program developed to run on the LADC SNS computer systems. This program can read a data file generated by the modeling programs or data can be entered using the keyboard. MOLDS has the following capabilities: draws the 3-D representation of a molecule using stick, ball and ball, or space filled model from Cartesian coordinates, draws different perspective views of the molecule; rotates the molecule on the X, Y, Z axis or about some arbitrary line in space, zooms in on a small area of the molecule in order to obtain a better view of a specific region; and makes hard copy representation of molecules on a graphic printer. In addition, MOLDS can be easily updated and readily adapted to run on most computer systems.
A Parallel Cartesian Approach for External Aerodynamics of Vehicles with Complex Geometry
NASA Technical Reports Server (NTRS)
Aftosmis, M. J.; Berger, M. J.; Adomavicius, G.
2001-01-01
This workshop paper presents the current status in the development of a new approach for the solution of the Euler equations on Cartesian meshes with embedded boundaries in three dimensions on distributed and shared memory architectures. The approach uses adaptively refined Cartesian hexahedra to fill the computational domain. Where these cells intersect the geometry, they are cut by the boundary into arbitrarily shaped polyhedra which receive special treatment by the solver. The presentation documents a newly developed multilevel upwind solver based on a flexible domain-decomposition strategy. One novel aspect of the work is its use of space-filling curves (SFC) for memory efficient on-the-fly parallelization, dynamic re-partitioning and automatic coarse mesh generation. Within each subdomain the approach employs a variety reordering techniques so that relevant data are on the same page in memory permitting high-performance on cache-based processors. Details of the on-the-fly SFC based partitioning are presented as are construction rules for the automatic coarse mesh generation. After describing the approach, the paper uses model problems and 3- D configurations to both verify and validate the solver. The model problems demonstrate that second-order accuracy is maintained despite the presence of the irregular cut-cells in the mesh. In addition, it examines both parallel efficiency and convergence behavior. These investigations demonstrate a parallel speed-up in excess of 28 on 32 processors of an SGI Origin 2000 system and confirm that mesh partitioning has no effect on convergence behavior.
Simulations of 6-DOF Motion with a Cartesian Method
NASA Technical Reports Server (NTRS)
Murman, Scott M.; Aftosmis, Michael J.; Berger, Marsha J.; Kwak, Dochan (Technical Monitor)
2003-01-01
Coupled 6-DOF/CFD trajectory predictions using an automated Cartesian method are demonstrated by simulating a GBU-32/JDAM store separating from an F-18C aircraft. Numerical simulations are performed at two Mach numbers near the sonic speed, and compared with flight-test telemetry and photographic-derived data. Simulation results obtained with a sequential-static series of flow solutions are contrasted with results using a time-dependent flow solver. Both numerical methods show good agreement with the flight-test data through the first half of the simulations. The sequential-static and time-dependent methods diverge over the last half of the trajectory prediction. after the store produces peak angular rates. A cost comparison for the Cartesian method is included, in terms of absolute cost and relative to computing uncoupled 6-DOF trajectories. A detailed description of the 6-DOF method, as well as a verification of its accuracy, is provided in an appendix.
Cartesian to geodetic coordinates conversion on a triaxial ellipsoid
NASA Astrophysics Data System (ADS)
Ligas, Marcin
2012-04-01
A new method of transforming Cartesian to geodetic (or planetographic) coordinates on a triaxial ellipsoid is presented. The method is based on simple reasoning coming from essentials of vector calculus. The reasoning results in solving a nonlinear system of equations for coordinates of the point being the projection of a point located outside or inside a triaxial ellipsoid along the normal to the ellipsoid. The presented method has been compared to a vector method of Feltens (J Geod 83:129-137, 2009) who claims that no other methods are available in the literature. Generally, our method turns out to be more accurate, faster and applicable to celestial bodies characterized by different geometric parameters. The presented method also fits to the classical problem of converting Cartesian to geodetic coordinates on the ellipsoid of revolution.
Iterative Reconstruction of Volumetric Particle Distribution for 3D Velocimetry
NASA Astrophysics Data System (ADS)
Wieneke, Bernhard; Neal, Douglas
2011-11-01
A number of different volumetric flow measurement techniques exist for following the motion of illuminated particles. For experiments that have lower seeding densities, 3D-PTV uses recorded images from typically 3-4 cameras and then tracks the individual particles in space and time. This technique is effective in flows that have lower seeding densities. For flows that have a higher seeding density, tomographic PIV uses a tomographic reconstruction algorithm (e.g. MART) to reconstruct voxel intensities of the recorded volume followed by the cross-correlation of subvolumes to provide the instantaneous 3D vector fields on a regular grid. A new hybrid algorithm is presented which iteratively reconstructs the 3D-particle distribution directly using particles with certain imaging properties instead of voxels as base functions. It is shown with synthetic data that this method is capable of reconstructing densely seeded flows up to 0.05 particles per pixel (ppp) with the same or higher accuracy than 3D-PTV and tomographic PIV. Finally, this new method is validated using experimental data on a turbulent jet.
Geospatial Modelling Approach for 3d Urban Densification Developments
NASA Astrophysics Data System (ADS)
Koziatek, O.; Dragićević, S.; Li, S.
2016-06-01
With growing populations, economic pressures, and the need for sustainable practices, many urban regions are rapidly densifying developments in the vertical built dimension with mid- and high-rise buildings. The location of these buildings can be projected based on key factors that are attractive to urban planners, developers, and potential buyers. Current research in this area includes various modelling approaches, such as cellular automata and agent-based modelling, but the results are mostly linked to raster grids as the smallest spatial units that operate in two spatial dimensions. Therefore, the objective of this research is to develop a geospatial model that operates on irregular spatial tessellations to model mid- and high-rise buildings in three spatial dimensions (3D). The proposed model is based on the integration of GIS, fuzzy multi-criteria evaluation (MCE), and 3D GIS-based procedural modelling. Part of the City of Surrey, within the Metro Vancouver Region, Canada, has been used to present the simulations of the generated 3D building objects. The proposed 3D modelling approach was developed using ESRI's CityEngine software and the Computer Generated Architecture (CGA) language.
Designing 3D Structure by 5-7 Kirigami
NASA Astrophysics Data System (ADS)
Gong, Xingting; Cho, Yigil; Castle, Toen; Sussman, Daniel; Kamien, Randall
2015-03-01
The purpose of this talk is to explore how one can create 3D structures from 2D materials through the art of kirigami. Kirigami expands upon origami by allowing not only folds, but also cuts, into materials. If we take an incompressible material such as paper and remove a hole from it, the paper will buckle into the third dimension once that hole is sealed in order to relieve strain. Thus, orienting cuts and folds in certain places throughout a sheet of paper can influence its ``pop-up,'' 3D structure. To narrow down the inverse design problem, we confined ourselves to making only one kind of cut (which we call the ``5-7 cut'') on a honeycomb grid, and we show how this single cut can give rise to arbitrarily complex three dimensional structures. A simple set of rules exists: (a) one 5-7 cut divides the material into 2 sections which can choose to pop-up or down independently of each other, (b) rows of uniform cuts must pop up or down in unison, giving (nearly) arbitrary 2D structure, and (c) the 5-7 cuts can be arranged in various ways to create 6 basic pop-up ``modes,'' which can then be arranged to give (nearly) arbitrary 3D structure. These simple rules allow a framework for designing targeted 3D structure from an initial 2D sheet of material. This work was supported by NSF EFRI-ODISSEI Grant EFRI 13-31583.
Robust 3D reconstruction system for human jaw modeling
NASA Astrophysics Data System (ADS)
Yamany, Sameh M.; Farag, Aly A.; Tazman, David; Farman, Allan G.
1999-03-01
This paper presents a model-based vision system for dentistry that will replace traditional approaches used in diagnosis, treatment planning and surgical simulation. Dentistry requires accurate 3D representation of the teeth and jaws for many diagnostic and treatment purposes. For example orthodontic treatment involves the application of force systems to teeth over time to correct malocclusion. In order to evaluate tooth movement progress, the orthodontists monitors this movement by means of visual inspection, intraoral measurements, fabrication of plastic models, photographs and radiographs, a process which is both costly and time consuming. In this paper an integrate system has been developed to record the patient's occlusion using computer vision. Data is acquired with an intraoral video camera. A modified shape from shading (SFS) technique, using perspective projection and camera calibration, is used to extract accurate 3D information from a sequence of 2D images of the jaw. A new technique for 3D data registration, using a Grid Closest Point transform and genetic algorithms, is used to register the SFS output. Triangulization is then performed, and a solid 3D model is obtained via a rapid prototype machine.
3-D Technology Approaches for Biological Ecologies
NASA Astrophysics Data System (ADS)
Liu, Liyu; Austin, Robert; U. S-China Physical-Oncology Sciences Alliance (PS-OA) Team
Constructing three dimensional (3-D) landscapes is an inevitable issue in deep study of biological ecologies, because in whatever scales in nature, all of the ecosystems are composed by complex 3-D environments and biological behaviors. Just imagine if a 3-D technology could help complex ecosystems be built easily and mimic in vivo microenvironment realistically with flexible environmental controls, it will be a fantastic and powerful thrust to assist researchers for explorations. For years, we have been utilizing and developing different technologies for constructing 3-D micro landscapes for biophysics studies in in vitro. Here, I will review our past efforts, including probing cancer cell invasiveness with 3-D silicon based Tepuis, constructing 3-D microenvironment for cell invasion and metastasis through polydimethylsiloxane (PDMS) soft lithography, as well as explorations of optimized stenting positions for coronary bifurcation disease with 3-D wax printing and the latest home designed 3-D bio-printer. Although 3-D technologies is currently considered not mature enough for arbitrary 3-D micro-ecological models with easy design and fabrication, I hope through my talk, the audiences will be able to sense its significance and predictable breakthroughs in the near future. This work was supported by the State Key Development Program for Basic Research of China (Grant No. 2013CB837200), the National Natural Science Foundation of China (Grant No. 11474345) and the Beijing Natural Science Foundation (Grant No. 7154221).
Clement, T.P.; Jones, N.L.
1998-02-01
RT3D (Reactive Transport in 3-Dimensions) is a computer code that solves coupled partial differential equations that describe reactive-flow and transport of multiple mobile and/or immobile species in a three dimensional saturated porous media. RT3D was developed from the single-species transport code, MT3D (DoD-1.5, 1997 version). As with MT3D, RT3D also uses the USGS groundwater flow model MODFLOW for computing spatial and temporal variations in groundwater head distribution. This report presents a set of tutorial problems that are designed to illustrate how RT3D simulations can be performed within the Department of Defense Groundwater Modeling System (GMS). GMS serves as a pre- and post-processing interface for RT3D. GMS can be used to define all the input files needed by RT3D code, and later the code can be launched from within GMS and run as a separate application. Once the RT3D simulation is completed, the solution can be imported to GMS for graphical post-processing. RT3D v1.0 supports several reaction packages that can be used for simulating different types of reactive contaminants. Each of the tutorials, described below, provides training on a different RT3D reaction package. Each reaction package has different input requirements, and the tutorials are designed to describe these differences. Furthermore, the tutorials illustrate the various options available in GMS for graphical post-processing of RT3D results. Users are strongly encouraged to complete the tutorials before attempting to use RT3D and GMS on a routine basis.
Irreducible Cartesian tensors of highest weight, for arbitrary order
NASA Astrophysics Data System (ADS)
Mane, S. R.
2016-03-01
A closed form expression is presented for the irreducible Cartesian tensor of highest weight, for arbitrary order. Two proofs are offered, one employing bookkeeping of indices and, after establishing the connection with the so-called natural tensors and their projection operators, the other one employing purely coordinate-free tensor manipulations. Some theorems and formulas in the published literature are generalized from SO(3) to SO(n), for dimensions n ≥ 3.
NASA Astrophysics Data System (ADS)
Lague, D.; Brodu, N.; Leroux, J.
2012-12-01
Ground based lidar and photogrammetric techniques are increasingly used to track the evolution of natural surfaces in 3D at an unprecedented resolution and precision. The range of applications encompass many type of natural surfaces with different geometries and roughness characteristics (landslides, cliff erosion, river beds, bank erosion,....). Unravelling surface change in these contexts requires to compare large point clouds in 2D or 3D. The most commonly used method in geomorphology is based on a 2D difference of the gridded point clouds. Yet this is hardly adapted to many 3D natural environments such as rivers (with horizontal beds and vertical banks), while gridding complex rough surfaces is a complex task. On the other hand, tools allowing to perform 3D comparison are scarce and may require to mesh the point clouds which is difficult on rough natural surfaces. Moreover, existing 3D comparison tools do not provide an explicit calculation of confidence intervals that would factor in registration errors, roughness effects and instrument related position uncertainties. To unlock this problem, we developed the first algorithm combining a 3D measurement of surface change directly on point clouds with an estimate of spatially variable confidence intervals (called M3C2). The method has two steps : (1) surface normal estimation and orientation in 3D at a scale consistent with the local roughness ; (2) measurement of mean surface change along the normal direction with explicit calculation of a local confidence interval. Comparison with existing 3D methods based on a closest-point calculation demonstrates the higher precision of the M3C2 method when mm changes needs to be detected. The M3C2 method is also simple to use as it does not require surface meshing or gridding, and is not sensitive to missing data or change in point density. We also present a 3D classification tool (CANUPO) for vegetation removal based on a new geometrical measure: the multi
Quality-based generation of weather radar Cartesian products
NASA Astrophysics Data System (ADS)
Osrodka, K.; Szturc, J.
2015-05-01
Weather radar data volumes are commonly processed to obtain various 2-D Cartesian products based on the transfer from polar to Cartesian representations through a certain interpolation method. In this research an algorithm of the spatial interpolation of polar reflectivity data employing quality index data is applied to find the Cartesian reflectivity as plan position indicator products. On this basis, quality-based versions of standard algorithms for the generation of the following products have been developed: ETOP (echo top), MAX (maximum of reflectivity), and VIL (vertically integrated liquid water). Moreover, as an example of a higher-level product, a CONVECTION (detection of convection) has been defined as a specific combination of the above-listed standard products. A corresponding quality field is determined for each generated product, taking into account the quality of the pixels from which a given product was determined and how large a fraction of the investigated heights was scanned. Examples of such quality-based products are presented in the paper.
Frequency-offset Cartesian feedback for MRI power amplifier linearization.
Zanchi, Marta G; Stang, Pascal; Kerr, Adam; Pauly, John M; Scott, Greig C
2011-02-01
High-quality magnetic resonance imaging (MRI) requires precise control of the transmit radio-frequency (RF) field. In parallel excitation applications such as transmit SENSE, high RF power linearity is essential to cancel aliased excitations. In widely-employed class AB power amplifiers, gain compression, cross-over distortion, memory effects, and thermal drift all distort the RF field modulation and can degrade image quality. Cartesian feedback (CF) linearization can mitigate these effects in MRI, if the quadrature mismatch and dc offset imperfections inherent in the architecture can be minimized. In this paper, we present a modified Cartesian feedback technique called "frequency-offset Cartesian feedback" (FOCF) that significantly reduces these problems. In the FOCF architecture, the feedback control is performed at a low intermediate frequency rather than dc, so that quadrature ghosts and dc errors are shifted outside the control bandwidth. FOCF linearization is demonstrated with a variety of typical MRI pulses. Simulation of the magnetization obtained with the Bloch equation demonstrates that high-fidelity RF reproduction can be obtained even with inexpensive class AB amplifiers. Finally, the enhanced RF fidelity of FOCF over CF is demonstrated with actual images obtained in a 1.5 T MRI system. PMID:20959264
Frequency-Offset Cartesian Feedback for MRI Power Amplifier Linearization
Zanchi, Marta Gaia; Stang, Pascal; Kerr, Adam; Pauly, John Mark; Scott, Greig Cameron
2011-01-01
High-quality magnetic resonance imaging (MRI) requires precise control of the transmit radio-frequency field. In parallel excitation applications such as transmit SENSE, high RF power linearity is essential to cancel aliased excitations. In widely-employed class AB power amplifiers, gain compression, cross-over distortion, memory effects, and thermal drift all distort the RF field modulation and can degrade image quality. Cartesian feedback (CF) linearization can mitigate these effects in MRI, if the quadrature mismatch and DC offset imperfections inherent in the architecture can be minimized. In this paper, we present a modified Cartesian feedback technique called “frequency-offset Cartesian feedback” (FOCF) that significantly reduces these problems. In the FOCF architecture, the feedback control is performed at a low intermediate frequency rather than DC, so that quadrature ghosts and DC errors are shifted outside the control bandwidth. FOCF linearization is demonstrated with a variety of typical MRI pulses. Simulation of the magnetization obtained with the Bloch equation demonstrates that high-fidelity RF reproduction can be obtained even with inexpensive class AB amplifiers. Finally, the enhanced RF fidelity of FOCF over CF is demonstrated with actual images obtained in a 1.5 T MRI system. PMID:20959264
Provably optimal parallel transport sweeps on regular grids
Adams, M. P.; Adams, M. L.; Hawkins, W. D.; Smith, T.; Rauchwerger, L.; Amato, N. M.; Bailey, T. S.; Falgout, R. D.
2013-07-01
We have found provably optimal algorithms for full-domain discrete-ordinate transport sweeps on regular grids in 3D Cartesian geometry. We describe these algorithms and sketch a 'proof that they always execute the full eight-octant sweep in the minimum possible number of stages for a given P{sub x} x P{sub y} x P{sub z} partitioning. Computational results demonstrate that our optimal scheduling algorithms execute sweeps in the minimum possible stage count. Observed parallel efficiencies agree well with our performance model. An older version of our PDT transport code achieves almost 80% parallel efficiency on 131,072 cores, on a weak-scaling problem with only one energy group, 80 directions, and 4096 cells/core. A newer version is less efficient at present-we are still improving its implementation - but achieves almost 60% parallel efficiency on 393,216 cores. These results conclusively demonstrate that sweeps can perform with high efficiency on core counts approaching 10{sup 6}. (authors)
3D Dynamic Echocardiography with a Digitizer
NASA Astrophysics Data System (ADS)
Oshiro, Osamu; Matani, Ayumu; Chihara, Kunihiro
1998-05-01
In this paper,a three-dimensional (3D) dynamic ultrasound (US) imaging system,where a US brightness-mode (B-mode) imagetriggered with an R-wave of electrocardiogram (ECG)was obtained with an ultrasound diagnostic deviceand the location and orientation of the US probewere simultaneously measured with a 3D digitizer, is described.The obtained B-mode imagewas then projected onto a virtual 3D spacewith the proposed interpolation algorithm using a Gaussian operator.Furthermore, a 3D image was presented on a cathode ray tube (CRT)and stored in virtual reality modeling language (VRML).We performed an experimentto reconstruct a 3D heart image in systole using this system.The experimental results indicatethat the system enables the visualization ofthe 3D and internal structure of a heart viewed from any angleand has potential for use in dynamic imaging,intraoperative ultrasonography and tele-medicine.
NASA Technical Reports Server (NTRS)
Dulikravich, D. S.
1982-01-01
A fast computer program, GRID3C, was developed for accurately generating periodic, boundary conforming, three dimensional, consecutively refined computational grids applicable to realistic axial turbomachinery geometries. The method is based on using two functions to generate two dimensional grids on a number of coaxial axisymmetric surfaces positioned between the centerbody and the outer radial boundary. These boundary fitted grids are of the C type and are characterized by quasi-orthogonality and geometric periodicity. The built in nonorthogonal coordinate stretchings and shearings cause the grid clustering in the regions of interest. The stretching parameters are part of the input to GRID3C. In its present version GRID3C can generate and store a maximum of four consecutively refined three dimensional grids. The output grid coordinates can be calculated either in the Cartesian or in the cylindrical coordinate system.
A simple backprojection algorithm for 3D in vivo EPID dosimetry of IMRT treatments
Wendling, Markus; McDermott, Leah N.; Mans, Anton; Sonke, Jan-Jakob; Herk, Marcel van; Mijnheer, Ben J.
2009-07-15
Treatment plans are usually designed, optimized, and evaluated based on the total 3D dose distribution, motivating a total 3D dose verification. The purpose of this study was to develop a 2D transmission-dosimetry method using an electronic portal imaging device (EPID) into a simple 3D method that provides 3D dose information. In the new method, the dose is reconstructed within the patient volume in multiple planes parallel to the EPID for each gantry angle. By summing the 3D dose grids of all beams, the 3D dose distribution for the total treatment fraction is obtained. The algorithm uses patient contours from the planning CT scan but does not include tissue inhomogeneity corrections. The 3D EPID dosimetry method was tested for IMRT fractions of a prostate, a rectum, and a head-and-neck cancer patient. Planned and in vivo-measured dose distributions were within 2% at the dose prescription point. Within the 50% isodose surface of the prescribed dose, at least 97% of points were in agreement, evaluated with a 3D {gamma} method with criteria of 3% of the prescribed dose and 0.3 cm. Full 3D dose reconstruction on a 0.1x0.1x0.1 cm{sup 3} grid and 3D {gamma} evaluation took less than 15 min for one fraction on a standard PC. The method allows in vivo determination of 3D dose-volume parameters that are common in clinical practice. The authors conclude that their EPID dosimetry method is an accurate and fast tool for in vivo dose verification of IMRT plans in 3D. Their approach is independent of the treatment planning system and provides a practical safety net for radiotherapy.
3D Scientific Visualization with Blender
NASA Astrophysics Data System (ADS)
Kent, Brian R.
2015-03-01
This is the first book written on using Blender for scientific visualization. It is a practical and interesting introduction to Blender for understanding key parts of 3D rendering and animation that pertain to the sciences via step-by-step guided tutorials. 3D Scientific Visualization with Blender takes you through an understanding of 3D graphics and modelling for different visualization scenarios in the physical sciences.
Software for 3D radiotherapy dosimetry. Validation
NASA Astrophysics Data System (ADS)
Kozicki, Marek; Maras, Piotr; Karwowski, Andrzej C.
2014-08-01
The subject of this work is polyGeVero® software (GeVero Co., Poland), which has been developed to fill the requirements of fast calculations of 3D dosimetry data with the emphasis on polymer gel dosimetry for radiotherapy. This software comprises four workspaces that have been prepared for: (i) calculating calibration curves and calibration equations, (ii) storing the calibration characteristics of the 3D dosimeters, (iii) calculating 3D dose distributions in irradiated 3D dosimeters, and (iv) comparing 3D dose distributions obtained from measurements with the aid of 3D dosimeters and calculated with the aid of treatment planning systems (TPSs). The main features and functions of the software are described in this work. Moreover, the core algorithms were validated and the results are presented. The validation was performed using the data of the new PABIGnx polymer gel dosimeter. The polyGeVero® software simplifies and greatly accelerates the calculations of raw 3D dosimetry data. It is an effective tool for fast verification of TPS-generated plans for tumor irradiation when combined with a 3D dosimeter. Consequently, the software may facilitate calculations by the 3D dosimetry community. In this work, the calibration characteristics of the PABIGnx obtained through four calibration methods: multi vial, cross beam, depth dose, and brachytherapy, are discussed as well.
Dimensional accuracy of 3D printed vertebra
NASA Astrophysics Data System (ADS)
Ogden, Kent; Ordway, Nathaniel; Diallo, Dalanda; Tillapaugh-Fay, Gwen; Aslan, Can
2014-03-01
3D printer applications in the biomedical sciences and medical imaging are expanding and will have an increasing impact on the practice of medicine. Orthopedic and reconstructive surgery has been an obvious area for development of 3D printer applications as the segmentation of bony anatomy to generate printable models is relatively straightforward. There are important issues that should be addressed when using 3D printed models for applications that may affect patient care; in particular the dimensional accuracy of the printed parts needs to be high to avoid poor decisions being made prior to surgery or therapeutic procedures. In this work, the dimensional accuracy of 3D printed vertebral bodies derived from CT data for a cadaver spine is compared with direct measurements on the ex-vivo vertebra and with measurements made on the 3D rendered vertebra using commercial 3D image processing software. The vertebra was printed on a consumer grade 3D printer using an additive print process using PLA (polylactic acid) filament. Measurements were made for 15 different anatomic features of the vertebral body, including vertebral body height, endplate width and depth, pedicle height and width, and spinal canal width and depth, among others. It is shown that for the segmentation and printing process used, the results of measurements made on the 3D printed vertebral body are substantially the same as those produced by direct measurement on the vertebra and measurements made on the 3D rendered vertebra.
Stereo 3-D Vision in Teaching Physics
NASA Astrophysics Data System (ADS)
Zabunov, Svetoslav
2012-03-01
Stereo 3-D vision is a technology used to present images on a flat surface (screen, paper, etc.) and at the same time to create the notion of three-dimensional spatial perception of the viewed scene. A great number of physical processes are much better understood when viewed in stereo 3-D vision compared to standard flat 2-D presentation. The current paper describes the modern stereo 3-D technologies that are applicable to various tasks in teaching physics in schools, colleges, and universities. Examples of stereo 3-D simulations developed by the author can be observed on online.
Accuracy in Quantitative 3D Image Analysis
Bassel, George W.
2015-01-01
Quantitative 3D imaging is becoming an increasingly popular and powerful approach to investigate plant growth and development. With the increased use of 3D image analysis, standards to ensure the accuracy and reproducibility of these data are required. This commentary highlights how image acquisition and postprocessing can introduce artifacts into 3D image data and proposes steps to increase both the accuracy and reproducibility of these analyses. It is intended to aid researchers entering the field of 3D image processing of plant cells and tissues and to help general readers in understanding and evaluating such data. PMID:25804539
FastScript3D - A Companion to Java 3D
NASA Technical Reports Server (NTRS)
Koenig, Patti
2005-01-01
FastScript3D is a computer program, written in the Java 3D(TM) programming language, that establishes an alternative language that helps users who lack expertise in Java 3D to use Java 3D for constructing three-dimensional (3D)-appearing graphics. The FastScript3D language provides a set of simple, intuitive, one-line text-string commands for creating, controlling, and animating 3D models. The first word in a string is the name of a command; the rest of the string contains the data arguments for the command. The commands can also be used as an aid to learning Java 3D. Developers can extend the language by adding custom text-string commands. The commands can define new 3D objects or load representations of 3D objects from files in formats compatible with such other software systems as X3D. The text strings can be easily integrated into other languages. FastScript3D facilitates communication between scripting languages [which enable programming of hyper-text markup language (HTML) documents to interact with users] and Java 3D. The FastScript3D language can be extended and customized on both the scripting side and the Java 3D side.
Efficient sensitivity computations in 3D air quality models
NASA Astrophysics Data System (ADS)
Kioutsioukis, Ioannis; Melas, Dimitrios; Zerefos, Christos; Ziomas, Ioannis
2005-04-01
The prediction of ground level ozone for air quality monitoring and assessment is simulated through an integrated system of gridded models (meteorological, photochemical), where the atmosphere is represented with a three-dimensional grid that may include thousands of grid cells. The continuity equation solved by the Photochemical Air Quality Model (PAQM) reproduces the atmospheric processes (dynamical, physical, chemical and radiative), such as moving and mixing air parcels from one grid cell to another, calculating chemical reactions, injecting new emissions. The whole modeling procedure includes several sources of uncertainty, especially in the large data sets that describe the status of the domain (boundary conditions, emissions, chemical reaction rates and several others). The robustness of the photochemical simulation is addressed in this work through the deterministic approach of sensitivity analysis. The automatic differentiation tool ADIFOR is applied on the 3D PAQM CAMx and augments its Fortran 77 code by introducing new lines of code that additionally calculate, in only one run, the gradient of the solution vector with respect to its input parameters. The applicability of the approach is evaluated through a sensitivity study of the modeled concentrations to perturbations at the boundary conditions and the emissions, for three essentially dissimilar European Metropolises of the Auto-Oil II programme (Athens, Milan, and London).
NASA Astrophysics Data System (ADS)
Tackley, Paul J.
2008-12-01
Here it is documented how an existing code for modelling mantle convection in a cartesian domain, Stag3D, has been converted to model a 3D spherical shell by using the recently introduced yin-yang grid. StagYY is thus the latest evolution of a code that has been in continuous use and development for about 15 years so incorporates much physics and several features including compressibility, phase transitions, compositional variations, non-linear rheology, parallelisation, tracers to track composition, partial melting and melt migration, and the ability to also model spherical patches, cartesian boxes, and various 2D geometries by changing one input switch. StagYY uses a multigrid solver to obtain a velocity-pressure solution at each timestep on a staggered grid, a finite-volume scheme for advection of temperature and tracers to track composition. Convergence of multigrid solvers in the presence of realistically large viscosity variations has always been a problem; here a new pressure interpolation scheme is presented that can dramatically improve the robustness of the iterations to large viscosity variations, with up to 19 orders of magnitude variation in presented tests. Benchmark tests show that StagYY produces results that are consistent with those produced by other codes. Performance tests show reasonable scaling on a parallel Beowulf cluster up to 64 CPUs, with up to 1.2 billion unknowns solved for in a few minutes. StagYY is designed to be a stand-alone application with no libraries required and if MPI is installed it can be run in parallel. Technical issues and goals for the future are discussed.
3D PDF - a means of public access to geological 3D - objects, using the example of GTA3D
NASA Astrophysics Data System (ADS)
Slaby, Mark-Fabian; Reimann, Rüdiger
2013-04-01
In geology, 3D modeling has become very important. In the past, two-dimensional data such as isolines, drilling profiles, or cross-sections based on those, were used to illustrate the subsurface geology, whereas now, we can create complex digital 3D models. These models are produced with special software, such as GOCAD ®. The models can be viewed, only through the software used to create them, or through viewers available for free. The platform-independent PDF (Portable Document Format), enforced by Adobe, has found a wide distribution. This format has constantly evolved over time. Meanwhile, it is possible to display CAD data in an Adobe 3D PDF file with the free Adobe Reader (version 7). In a 3D PDF, a 3D model is freely rotatable and can be assembled from a plurality of objects, which can thus be viewed from all directions on their own. In addition, it is possible to create moveable cross-sections (profiles), and to assign transparency to the objects. Based on industry-standard CAD software, 3D PDFs can be generated from a large number of formats, or even be exported directly from this software. In geoinformatics, different approaches to creating 3D PDFs exist. The intent of the Authority for Mining, Energy and Geology to allow free access to the models of the Geotectonic Atlas (GTA3D), could not be realized with standard software solutions. A specially designed code converts the 3D objects to VRML (Virtual Reality Modeling Language). VRML is one of the few formats that allow using image files (maps) as textures, and to represent colors and shapes correctly. The files were merged in Acrobat X Pro, and a 3D PDF was generated subsequently. A topographic map, a display of geographic directions and horizontal and vertical scales help to facilitate the use.
An aerial 3D printing test mission
NASA Astrophysics Data System (ADS)
Hirsch, Michael; McGuire, Thomas; Parsons, Michael; Leake, Skye; Straub, Jeremy
2016-05-01
This paper provides an overview of an aerial 3D printing technology, its development and its testing. This technology is potentially useful in its own right. In addition, this work advances the development of a related in-space 3D printing technology. A series of aerial 3D printing test missions, used to test the aerial printing technology, are discussed. Through completing these test missions, the design for an in-space 3D printer may be advanced. The current design for the in-space 3D printer involves focusing thermal energy to heat an extrusion head and allow for the extrusion of molten print material. Plastics can be used as well as composites including metal, allowing for the extrusion of conductive material. A variety of experiments will be used to test this initial 3D printer design. High altitude balloons will be used to test the effects of microgravity on 3D printing, as well as parabolic flight tests. Zero pressure balloons can be used to test the effect of long 3D printing missions subjected to low temperatures. Vacuum chambers will be used to test 3D printing in a vacuum environment. The results will be used to adapt a current prototype of an in-space 3D printer. Then, a small scale prototype can be sent into low-Earth orbit as a 3-U cube satellite. With the ability to 3D print in space demonstrated, future missions can launch production hardware through which the sustainability and durability of structures in space will be greatly improved.
3D ultrafast ultrasound imaging in vivo
NASA Astrophysics Data System (ADS)
Provost, Jean; Papadacci, Clement; Esteban Arango, Juan; Imbault, Marion; Fink, Mathias; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu
2014-10-01
Very high frame rate ultrasound imaging has recently allowed for the extension of the applications of echography to new fields of study such as the functional imaging of the brain, cardiac electrophysiology, and the quantitative imaging of the intrinsic mechanical properties of tumors, to name a few, non-invasively and in real time. In this study, we present the first implementation of Ultrafast Ultrasound Imaging in 3D based on the use of either diverging or plane waves emanating from a sparse virtual array located behind the probe. It achieves high contrast and resolution while maintaining imaging rates of thousands of volumes per second. A customized portable ultrasound system was developed to sample 1024 independent channels and to drive a 32 × 32 matrix-array probe. Its ability to track in 3D transient phenomena occurring in the millisecond range within a single ultrafast acquisition was demonstrated for 3D Shear-Wave Imaging, 3D Ultrafast Doppler Imaging, and, finally, 3D Ultrafast combined Tissue and Flow Doppler Imaging. The propagation of shear waves was tracked in a phantom and used to characterize its stiffness. 3D Ultrafast Doppler was used to obtain 3D maps of Pulsed Doppler, Color Doppler, and Power Doppler quantities in a single acquisition and revealed, at thousands of volumes per second, the complex 3D flow patterns occurring in the ventricles of the human heart during an entire cardiac cycle, as well as the 3D in vivo interaction of blood flow and wall motion during the pulse wave in the carotid at the bifurcation. This study demonstrates the potential of 3D Ultrafast Ultrasound Imaging for the 3D mapping of stiffness, tissue motion, and flow in humans in vivo and promises new clinical applications of ultrasound with reduced intra—and inter-observer variability.
Yin-Yang-Zhong grid: An overset grid system for a sphere
NASA Astrophysics Data System (ADS)
Hayashi, Hiroshi; Kageyama, Akira
2016-01-01
For numerical simulations inside a sphere, an overset grid system, Yin-Yang-Zhong grid, is proposed. The Yin-Yang-Zhong grid is an extension of the Yin-Yang grid, which is widely used in various simulations in spherical shell geometry. The Yin-Yang grid is itself an overset grid system with two component grids, and a new component grid called Zhong is placed at the center of the Yin-Yang grid. The Zhong grid component is constructed on Cartesian coordinates. Parallelization is intrinsically embedded in the Yin-Yang-Zhong grid system because the Zhong grid points are defined with cuboid blocks that are decomposed domains for parallelization. The computational efficiency approaches the optimum as the process number increases. Quantitative test simulations are performed for a diffusion problem in a sphere with the Yin-Yang-Zhong grid. Correct decay rates are obtained by the simulations. Two other tests in magnetohydrodynamics (MHD) in a sphere are also performed. One is an MHD dynamo simulation, and the other is an MHD relaxation simulation in a sphere.
Topology dictionary for 3D video understanding.
Tung, Tony; Matsuyama, Takashi
2012-08-01
This paper presents a novel approach that achieves 3D video understanding. 3D video consists of a stream of 3D models of subjects in motion. The acquisition of long sequences requires large storage space (2 GB for 1 min). Moreover, it is tedious to browse data sets and extract meaningful information. We propose the topology dictionary to encode and describe 3D video content. The model consists of a topology-based shape descriptor dictionary which can be generated from either extracted patterns or training sequences. The model relies on 1) topology description and classification using Reeb graphs, and 2) a Markov motion graph to represent topology change states. We show that the use of Reeb graphs as the high-level topology descriptor is relevant. It allows the dictionary to automatically model complex sequences, whereas other strategies would require prior knowledge on the shape and topology of the captured subjects. Our approach serves to encode 3D video sequences, and can be applied for content-based description and summarization of 3D video sequences. Furthermore, topology class labeling during a learning process enables the system to perform content-based event recognition. Experiments were carried out on various 3D videos. We showcase an application for 3D video progressive summarization using the topology dictionary. PMID:22745004
3-D seismology in the Arabian Gulf
Al-Husseini, M.; Chimblo, R.
1995-08-01
Since 1977 when Aramco and GSI (Geophysical Services International) pioneered the first 3-D seismic survey in the Arabian Gulf, under the guidance of Aramco`s Chief Geophysicist John Hoke, 3-D seismology has been effectively used to map many complex subsurface geological phenomena. By the mid-1990s extensive 3-D surveys were acquired in Abu Dhabi, Oman, Qatar and Saudi Arabia. Also in the mid-1990`s Bahrain, Kuwait and Dubai were preparing to record surveys over their fields. On the structural side 3-D has refined seismic maps, focused faults and fractures systems, as well as outlined the distribution of facies, porosity and fluid saturation. In field development, 3D has not only reduced drilling costs significantly, but has also improved the understanding of fluid behavior in the reservoir. In Oman, Petroleum Development Oman (PDO) has now acquired the first Gulf 4-D seismic survey (time-lapse 3D survey) over the Yibal Field. The 4-D survey will allow PDO to directly monitor water encroachment in the highly-faulted Cretaceous Shu`aiba reservoir. In exploration, 3-D seismology has resolved complex prospects with structural and stratigraphic complications and reduced the risk in the selection of drilling locations. The many case studies from Saudi Arabia, Oman, Qatar and the United Arab Emirates, which are reviewed in this paper, attest to the effectiveness of 3D seismology in exploration and producing, in clastics and carbonates reservoirs, and in the Mesozoic and Paleozoic.
A 3D Geostatistical Mapping Tool
1999-02-09
This software provides accurate 3D reservoir modeling tools and high quality 3D graphics for PC platforms enabling engineers and geologists to better comprehend reservoirs and consequently improve their decisions. The mapping algorithms are fractals, kriging, sequential guassian simulation, and three nearest neighbor methods.
ERIC Educational Resources Information Center
Norbury, Keith
2012-01-01
It may be too soon for students to be showing up for class with popcorn and gummy bears, but technology similar to that behind the 3D blockbuster movie "Avatar" is slowly finding its way into college classrooms. 3D classroom projectors are taking students on fantastic voyages inside the human body, to the ruins of ancient Greece--even to faraway…
Stereoscopic Investigations of 3D Coulomb Balls
Kaeding, Sebastian; Melzer, Andre; Arp, Oliver; Block, Dietmar; Piel, Alexander
2005-10-31
In dusty plasmas particles are arranged due to the influence of external forces and the Coulomb interaction. Recently Arp et al. were able to generate 3D spherical dust clouds, so-called Coulomb balls. Here, we present measurements that reveal the full 3D particle trajectories from stereoscopic imaging.
3-D structures of planetary nebulae
NASA Astrophysics Data System (ADS)
Steffen, W.
2016-07-01
Recent advances in the 3-D reconstruction of planetary nebulae are reviewed. We include not only results for 3-D reconstructions, but also the current techniques in terms of general methods and software. In order to obtain more accurate reconstructions, we suggest to extend the widely used assumption of homologous nebula expansion to map spectroscopically measured velocity to position along the line of sight.
Wow! 3D Content Awakens the Classroom
ERIC Educational Resources Information Center
Gordon, Dan
2010-01-01
From her first encounter with stereoscopic 3D technology designed for classroom instruction, Megan Timme, principal at Hamilton Park Pacesetter Magnet School in Dallas, sensed it could be transformative. Last spring, when she began pilot-testing 3D content in her third-, fourth- and fifth-grade classrooms, Timme wasn't disappointed. Students…
3D Printed Block Copolymer Nanostructures
ERIC Educational Resources Information Center
Scalfani, Vincent F.; Turner, C. Heath; Rupar, Paul A.; Jenkins, Alexander H.; Bara, Jason E.
2015-01-01
The emergence of 3D printing has dramatically advanced the availability of tangible molecular and extended solid models. Interestingly, there are few nanostructure models available both commercially and through other do-it-yourself approaches such as 3D printing. This is unfortunate given the importance of nanotechnology in science today. In this…
Static & Dynamic Response of 3D Solids
1996-07-15
NIKE3D is a large deformations 3D finite element code used to obtain the resulting displacements and stresses from multi-body static and dynamic structural thermo-mechanics problems with sliding interfaces. Many nonlinear and temperature dependent constitutive models are available.
Immersive 3D Geovisualization in Higher Education
ERIC Educational Resources Information Center
Philips, Andrea; Walz, Ariane; Bergner, Andreas; Graeff, Thomas; Heistermann, Maik; Kienzler, Sarah; Korup, Oliver; Lipp, Torsten; Schwanghart, Wolfgang; Zeilinger, Gerold
2015-01-01
In this study, we investigate how immersive 3D geovisualization can be used in higher education. Based on MacEachren and Kraak's geovisualization cube, we examine the usage of immersive 3D geovisualization and its usefulness in a research-based learning module on flood risk, called GEOSimulator. Results of a survey among participating students…
Stereo 3-D Vision in Teaching Physics
ERIC Educational Resources Information Center
Zabunov, Svetoslav
2012-01-01
Stereo 3-D vision is a technology used to present images on a flat surface (screen, paper, etc.) and at the same time to create the notion of three-dimensional spatial perception of the viewed scene. A great number of physical processes are much better understood when viewed in stereo 3-D vision compared to standard flat 2-D presentation. The…
Pathways for Learning from 3D Technology
ERIC Educational Resources Information Center
Carrier, L. Mark; Rab, Saira S.; Rosen, Larry D.; Vasquez, Ludivina; Cheever, Nancy A.
2012-01-01
The purpose of this study was to find out if 3D stereoscopic presentation of information in a movie format changes a viewer's experience of the movie content. Four possible pathways from 3D presentation to memory and learning were considered: a direct connection based on cognitive neuroscience research; a connection through "immersion" in that 3D…
Progress in Grid Generation: From Chimera to DRAGON Grids
NASA Technical Reports Server (NTRS)
Liou, Meng-Sing; Kao, Kai-Hsiung
1994-01-01
Hybrid grids, composed of structured and unstructured grids, combines the best features of both. The chimera method is a major stepstone toward a hybrid grid from which the present approach is evolved. The chimera grid composes a set of overlapped structured grids which are independently generated and body-fitted, yielding a high quality grid readily accessible for efficient solution schemes. The chimera method has been shown to be efficient to generate a grid about complex geometries and has been demonstrated to deliver accurate aerodynamic prediction of complex flows. While its geometrical flexibility is attractive, interpolation of data in the overlapped regions - which in today's practice in 3D is done in a nonconservative fashion, is not. In the present paper we propose a hybrid grid scheme that maximizes the advantages of the chimera scheme and adapts the strengths of the unstructured grid while at the same time keeps its weaknesses minimal. Like the chimera method, we first divide up the physical domain by a set of structured body-fitted grids which are separately generated and overlaid throughout a complex configuration. To eliminate any pure data manipulation which does not necessarily follow governing equations, we use non-structured grids only to directly replace the region of the arbitrarily overlapped grids. This new adaptation to the chimera thinking is coined the DRAGON grid. The nonstructured grid region sandwiched between the structured grids is limited in size, resulting in only a small increase in memory and computational effort. The DRAGON method has three important advantages: (1) preserving strengths of the chimera grid; (2) eliminating difficulties sometimes encountered in the chimera scheme, such as the orphan points and bad quality of interpolation stencils; and (3) making grid communication in a fully conservative and consistent manner insofar as the governing equations are concerned. To demonstrate its use, the governing equations are
Introduction of the ASP3D Computer Program for Unsteady Aerodynamic and Aeroelastic Analyses
NASA Technical Reports Server (NTRS)
Batina, John T.
2005-01-01
A new computer program has been developed called ASP3D (Advanced Small Perturbation 3D), which solves the small perturbation potential flow equation in an advanced form including mass-consistent surface and trailing wake boundary conditions, and entropy, vorticity, and viscous effects. The purpose of the program is for unsteady aerodynamic and aeroelastic analyses, especially in the nonlinear transonic flight regime. The program exploits the simplicity of stationary Cartesian meshes with the movement or deformation of the configuration under consideration incorporated into the solution algorithm through a planar surface boundary condition. The new ASP3D code is the result of a decade of developmental work on improvements to the small perturbation formulation, performed while the author was employed as a Senior Research Scientist in the Configuration Aerodynamics Branch at the NASA Langley Research Center. The ASP3D code is a significant improvement to the state-of-the-art for transonic aeroelastic analyses over the CAP-TSD code (Computational Aeroelasticity Program Transonic Small Disturbance), which was developed principally by the author in the mid-1980s. The author is in a unique position as the developer of both computer programs to compare, contrast, and ultimately make conclusions regarding the underlying formulations and utility of each code. The paper describes the salient features of the ASP3D code including the rationale for improvements in comparison with CAP-TSD. Numerous results are presented to demonstrate the ASP3D capability. The general conclusion is that the new ASP3D capability is superior to the older CAP-TSD code because of the myriad improvements developed and incorporated.
Clinical applications of 3-D dosimeters
NASA Astrophysics Data System (ADS)
Wuu, Cheng-Shie
2015-01-01
Both 3-D gels and radiochromic plastic dosimeters, in conjunction with dose image readout systems (MRI or optical-CT), have been employed to measure 3-D dose distributions in many clinical applications. The 3-D dose maps obtained from these systems can provide a useful tool for clinical dose verification for complex treatment techniques such as IMRT, SRS/SBRT, brachytherapy, and proton beam therapy. These complex treatments present high dose gradient regions in the boundaries between the target and surrounding critical organs. Dose accuracy in these areas can be critical, and may affect treatment outcome. In this review, applications of 3-D gels and PRESAGE dosimeter are reviewed and evaluated in terms of their performance in providing information on clinical dose verification as well as commissioning of various treatment modalities. Future interests and clinical needs on studies of 3-D dosimetry are also discussed.
Biocompatible 3D Matrix with Antimicrobial Properties.
Ion, Alberto; Andronescu, Ecaterina; Rădulescu, Dragoș; Rădulescu, Marius; Iordache, Florin; Vasile, Bogdan Ștefan; Surdu, Adrian Vasile; Albu, Madalina Georgiana; Maniu, Horia; Chifiriuc, Mariana Carmen; Grumezescu, Alexandru Mihai; Holban, Alina Maria
2016-01-01
The aim of this study was to develop, characterize and assess the biological activity of a new regenerative 3D matrix with antimicrobial properties, based on collagen (COLL), hydroxyapatite (HAp), β-cyclodextrin (β-CD) and usnic acid (UA). The prepared 3D matrix was characterized by Scanning Electron Microscopy (SEM), Fourier Transform Infrared Microscopy (FT-IRM), Transmission Electron Microscopy (TEM), and X-ray Diffraction (XRD). In vitro qualitative and quantitative analyses performed on cultured diploid cells demonstrated that the 3D matrix is biocompatible, allowing the normal development and growth of MG-63 osteoblast-like cells and exhibited an antimicrobial effect, especially on the Staphylococcus aureus strain, explained by the particular higher inhibitory activity of usnic acid (UA) against Gram positive bacterial strains. Our data strongly recommend the obtained 3D matrix to be used as a successful alternative for the fabrication of three dimensional (3D) anti-infective regeneration matrix for bone tissue engineering. PMID:26805790
Fabrication of 3D Silicon Sensors
Kok, A.; Hansen, T.E.; Hansen, T.A.; Lietaer, N.; Summanwar, A.; Kenney, C.; Hasi, J.; Da Via, C.; Parker, S.I.; /Hawaii U.
2012-06-06
Silicon sensors with a three-dimensional (3-D) architecture, in which the n and p electrodes penetrate through the entire substrate, have many advantages over planar silicon sensors including radiation hardness, fast time response, active edge and dual readout capabilities. The fabrication of 3D sensors is however rather complex. In recent years, there have been worldwide activities on 3D fabrication. SINTEF in collaboration with Stanford Nanofabrication Facility have successfully fabricated the original (single sided double column type) 3D detectors in two prototype runs and the third run is now on-going. This paper reports the status of this fabrication work and the resulted yield. The work of other groups such as the development of double sided 3D detectors is also briefly reported.
BEAMS3D Neutral Beam Injection Model
Lazerson, Samuel
2014-04-14
With the advent of applied 3D fi elds in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous velocity reduction, and pitch angle scattering are modeled with the ADAS atomic physics database [1]. Benchmark calculations are presented to validate the collisionless particle orbits, neutral beam injection model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields.
3D Visualization Development of SIUE Campus
NASA Astrophysics Data System (ADS)
Nellutla, Shravya
Geographic Information Systems (GIS) has progressed from the traditional map-making to the modern technology where the information can be created, edited, managed and analyzed. Like any other models, maps are simplified representations of real world. Hence visualization plays an essential role in the applications of GIS. The use of sophisticated visualization tools and methods, especially three dimensional (3D) modeling, has been rising considerably due to the advancement of technology. There are currently many off-the-shelf technologies available in the market to build 3D GIS models. One of the objectives of this research was to examine the available ArcGIS and its extensions for 3D modeling and visualization and use them to depict a real world scenario. Furthermore, with the advent of the web, a platform for accessing and sharing spatial information on the Internet, it is possible to generate interactive online maps. Integrating Internet capacity with GIS functionality redefines the process of sharing and processing the spatial information. Enabling a 3D map online requires off-the-shelf GIS software, 3D model builders, web server, web applications and client server technologies. Such environments are either complicated or expensive because of the amount of hardware and software involved. Therefore, the second objective of this research was to investigate and develop simpler yet cost-effective 3D modeling approach that uses available ArcGIS suite products and the free 3D computer graphics software for designing 3D world scenes. Both ArcGIS Explorer and ArcGIS Online will be used to demonstrate the way of sharing and distributing 3D geographic information on the Internet. A case study of the development of 3D campus for the Southern Illinois University Edwardsville is demonstrated.
3D Ultrafast Ultrasound Imaging In Vivo
Provost, Jean; Papadacci, Clement; Arango, Juan Esteban; Imbault, Marion; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu
2014-01-01
Very high frame rate ultrasound imaging has recently allowed for the extension of the applications of echography to new fields of study such as the functional imaging of the brain, cardiac electrophysiology, and the quantitative real-time imaging of the intrinsic mechanical properties of tumors, to name a few, non-invasively and in real time. In this study, we present the first implementation of Ultrafast Ultrasound Imaging in three dimensions based on the use of either diverging or plane waves emanating from a sparse virtual array located behind the probe. It achieves high contrast and resolution while maintaining imaging rates of thousands of volumes per second. A customized portable ultrasound system was developed to sample 1024 independent channels and to drive a 32×32 matrix-array probe. Its capability to track in 3D transient phenomena occurring in the millisecond range within a single ultrafast acquisition was demonstrated for 3-D Shear-Wave Imaging, 3-D Ultrafast Doppler Imaging and finally 3D Ultrafast combined Tissue and Flow Doppler. The propagation of shear waves was tracked in a phantom and used to characterize its stiffness. 3-D Ultrafast Doppler was used to obtain 3-D maps of Pulsed Doppler, Color Doppler, and Power Doppler quantities in a single acquisition and revealed, for the first time, the complex 3-D flow patterns occurring in the ventricles of the human heart during an entire cardiac cycle, and the 3-D in vivo interaction of blood flow and wall motion during the pulse wave in the carotid at the bifurcation. This study demonstrates the potential of 3-D Ultrafast Ultrasound Imaging for the 3-D real-time mapping of stiffness, tissue motion, and flow in humans in vivo and promises new clinical applications of ultrasound with reduced intra- and inter-observer variability. PMID:25207828
The psychology of the 3D experience
NASA Astrophysics Data System (ADS)
Janicke, Sophie H.; Ellis, Andrew
2013-03-01
With 3D televisions expected to reach 50% home saturation as early as 2016, understanding the psychological mechanisms underlying the user response to 3D technology is critical for content providers, educators and academics. Unfortunately, research examining the effects of 3D technology has not kept pace with the technology's rapid adoption, resulting in large-scale use of a technology about which very little is actually known. Recognizing this need for new research, we conducted a series of studies measuring and comparing many of the variables and processes underlying both 2D and 3D media experiences. In our first study, we found narratives within primetime dramas had the power to shift viewer attitudes in both 2D and 3D settings. However, we found no difference in persuasive power between 2D and 3D content. We contend this lack of effect was the result of poor conversion quality and the unique demands of 3D production. In our second study, we found 3D technology significantly increased enjoyment when viewing sports content, yet offered no added enjoyment when viewing a movie trailer. The enhanced enjoyment of the sports content was shown to be the result of heightened emotional arousal and attention in the 3D condition. We believe the lack of effect found for the movie trailer may be genre-related. In our final study, we found 3D technology significantly enhanced enjoyment of two video games from different genres. The added enjoyment was found to be the result of an increased sense of presence.
Finite element solver for 3-D compressible viscous flows
NASA Technical Reports Server (NTRS)
Reddy, K. C.; Reddy, J. N.
1986-01-01
The space shuttle main engine (SSME) has extremely complex internal flow structure. The geometry of the flow domain is three-dimensional with complicated topology. The flow is compressible, viscous, and turbulent with large gradients in flow quantities and regions of recirculations. The analysis of the flow field in SSME involves several tedious steps. One is the geometrical modeling of the particular zone of the SSME being studied. Accessing the geometry definition, digitalizing it, and developing surface interpolations suitable for an interior grid generator require considerable amount of manual labor. There are several types of grid generators available with some general-purpose finite element programs. An efficient and robust computational scheme for solving 3D Navier-Stokes equations has to be implemented. Post processing software has to be adapted to visualize and analyze the computed 3D flow field. The progress made in a project to develop software for the analysis of the flow is discussed. The technical approach to the development of the finite element scheme and the relaxation procedure are discussed. The three dimensional finite element code for the compressible Navier-Stokes equations is listed.
NASA Astrophysics Data System (ADS)
Madura, Thomas; Clementel, Nicola; Kruip, Chael; Icke, Vincent; Gull, Theodore
2014-09-01
We present the first results of full 3D radiative transfer simulations of the colliding stellar winds in a massive binary system. We accomplish this by applying the SIMPLEX algorithm for 3D radiative transfer on an unstructured Delaunay grid to recent 3D smoothed particle hydrodynamics (SPH) simulations of the colliding winds in the binary system η Carinae. We use SIMPLEX to obtain detailed ionization fractions of hydrogen and helium, in 3D, at the resolution of the original SPH simulations. We show how the SIMPLEX simulations can be used to generate synthetic spectral data cubes for comparison to data obtained with the Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph as part of a multi-cycle program to map changes in η Car's extended interacting wind structures across one binary cycle. Comparison of the HST observations to the SIMPLEX models can help lead to more accurate constraints on the orbital, stellar, and wind parameters of the η Car system, such as the primary's mass-loss rate and the companion's temperature and luminosity. While we initially focus specifically on the η Car binary, the numerical methods employed can be applied to numerous other colliding wind (WR140, WR137, WR19) and dusty 'pinwheel' (WR104, WR98a) binary systems. One of the biggest remaining mysteries is how dust can form and survive in such systems that contain a hot, luminous O star. Coupled with 3D hydrodynamical simulations, SIMPLEX simulations have the potential to help determine the regions where dust can form and survive in these unique objects.
3d model for site effect assessment at Nice (France)
NASA Astrophysics Data System (ADS)
Bertrand, E.; Courrioux, G.; Bourgine, B.; Bour, M.; Guillen, A.; Mouroux, P.; Devaux, E.; Duval, A. M.
2003-04-01
Assessment of lithologic site effects is based on an accurate knowledge of properties and geometry of superficial geological formations, i.e. ideally a 3D-4G subsurface model (Geology, Geomorphology, Geophysics, Geotechnics). Such a model has been achieved using a 3D geomodeler ("Geological Editor" developed at BRGM) that allows building 3D volumes of geological formations starting from drill-holes data, sections, and geological maps. This software uses a pseudo-stratigraphic pile in order to reproduce geological history and structural relationships (erosion, deposit). The interpolation is achieved through a 3D potential field. A geostatistical formulation allows to consider data points of a geological limit as equipotential, and sructural dips as gradient inputs for the 3D field interpolation. Then isosurfaces corresponding to each limit are combined using formation relationships to provide volumic models of geological formations. The first task was to identify the relevant geological formations underlying in Nice area. In a first approach Mesozoic bedrock, Pliocene bedrock, and Quaternary alluvial deposits have been distinguished considering their seismic properties. Then alluvions have been subdivided into 9 groups according to their lithology and granulometry. Modelling has been performed considering 2 major erosion surfaces, post-Mesozoic and post-Pliocene. The succession of Quaternary alluviums have been considered as "onlap deposits". Given adjacent lithologies contained in maps and drill holes, these relations lead to logical identification of the roof of formations to be interpolated. The distribution of modeled geological formations can be visualised in 3 dimensions or in 2D sections. Besides the visual interest of 3D representations, the model is first used to build a series of earth columns over a 50m/50m 2D grid. A statistical analysis allowed to identify 73 existing configurations in the Nice district area. Among these, only 15 configurations
Unstructured 3D Delaunay mesh generation applied to planes, trains and automobiles
NASA Technical Reports Server (NTRS)
Blake, Kenneth R.; Spragle, Gregory S.
1993-01-01
Technical issues associated with domain-tessellation production, including initial boundary node triangulation and volume mesh refinement, are presented for the 'TGrid' 3D Delaunay unstructured grid generation program. The approach employed is noted to be capable of preserving predefined triangular surface facets in the final tessellation. The capabilities of the approach are demonstrated by generating grids about an entire fighter aircraft configuration, a train, and a wind tunnel model of an automobile.
3D hyperpolarized He-3 MRI of ventilation using a multi-echo projection acquisition
Holmes, James H.; O’Halloran, Rafael L.; Brodsky, Ethan K.; Jung, Youngkyoo; Block, Walter F.; Fain, Sean B.
2010-01-01
A method is presented for high resolution 3D imaging of the whole lung using inhaled hyperpolarized (HP) He-3 MR with multiple half-echo radial trajectories that can accelerate imaging through undersampling. A multiple half-echo radial trajectory can be used to reduce the level of artifact for undersampled 3D projection reconstruction (PR) imaging by increasing the amount of data acquired per unit time for HP He-3 lung imaging. The point spread functions (PSFs) for breath-held He-3 MRI using multiple half-echo trajectories were evaluated using simulations to predict the effects of T2* and gas diffusion on image quality. Results from PSF simulations were consistent with imaging results in volunteer studies showing improved image quality with increasing number of echoes using up to 8 half-echoes. The 8 half-echo acquisition is shown to accommodate lost breath-holds as short as 6 s using a retrospective reconstruction at reduced resolution as well as to allow reduced breath-hold time compared to an equivalent Cartesian trajectory. Furthermore, preliminary results from a 3D dynamic inhalation-exhalation maneuver are demonstrated using the 8 half-echo trajectory. Results demonstrate the first high resolution 3D PR imaging of ventilation and respiratory dynamics in humans using HP He-3 MR. PMID:18429034
3D Dynamic Earthquake Fracture Simulation (Test Case)
NASA Astrophysics Data System (ADS)
Korkusuz Öztürk, Yasemin; Meral Özel, Nurcan; Ando, Ryosuke
2016-04-01
A 3D dynamic earthquake fracture simulation is being developed for the fault structures which are non-planar to understand heterogeneous stress states in the Marmara Sea. Locating in a seismic gap, a large earthquake is expected in the center of the Sea of Marmara. Concerning the fact that more than 14 million inhabitants of İstanbul, located very closely to the Marmara Sea, the importance of the analysis of the Central Marmara Sea is extremely high. A few 3D dynamic earthquake fracture studies have been already done in the Sea of Marmara for pure right lateral strike-slip stress regimes (Oglesby and Mai, 2012; Aochi and Ulrich, 2015). In this study, a 3D dynamic earthquake fracture model with heterogeneous stress patches from the TPV5, a SCEC code validation case, is adapted. In this test model, the fault and the ground surfaces are gridded by a scalene triangulation technique using GMSH program. For a grid size changing between 0.616 km and 1.050 km the number of elements for the fault surface is 1984 and for the ground surface is 1216. When these results are compared with Kaneko's results for TPV5 from SPECFEM3D, reliable findings could be observed for the first 6.5 seconds (stations on the fault) although a stability problem is encountered after this time threshold. To solve this problem grid sizes are made smaller, so the number of elements increase 7986 for the fault surface and 4867 for the ground surface. On the other hand, computational problems arise in that case, since the computation time is directly proportional to the number of total elements and the required memory also increases with the square of that. Therefore, it is expected that this method can be adapted for less coarse grid cases, regarding the main difficulty coming from the necessity of an effective supercomputer and run time limitations. The main objective of this research is to obtain 3D dynamic earthquake rupture scenarios, concerning not only planar and non-planar faults but also
Claes Hellerström and Cartesian diver microrespirometry
Welsh, Michael
2016-01-01
Cartesian diver microrespirometry was introduced by Claes Hellerström at the Department of Histology/Medical Cell Biology at Uppsala University, Sweden, to determine rates of oxygen consumption in islets of Langerhans. The theory behind this method is touched upon and the main findings described. Glucose-stimulated beta cell respiration significantly contributes to increased ATP generation, which is a prerequisite for stimulated insulin secretion and synthesis. This has had major implications for understanding the beta cell stimulus–secretion coupling. PMID:27181825
Medical 3D Printing for the Radiologist.
Mitsouras, Dimitris; Liacouras, Peter; Imanzadeh, Amir; Giannopoulos, Andreas A; Cai, Tianrun; Kumamaru, Kanako K; George, Elizabeth; Wake, Nicole; Caterson, Edward J; Pomahac, Bohdan; Ho, Vincent B; Grant, Gerald T; Rybicki, Frank J
2015-01-01
While use of advanced visualization in radiology is instrumental in diagnosis and communication with referring clinicians, there is an unmet need to render Digital Imaging and Communications in Medicine (DICOM) images as three-dimensional (3D) printed models capable of providing both tactile feedback and tangible depth information about anatomic and pathologic states. Three-dimensional printed models, already entrenched in the nonmedical sciences, are rapidly being embraced in medicine as well as in the lay community. Incorporating 3D printing from images generated and interpreted by radiologists presents particular challenges, including training, materials and equipment, and guidelines. The overall costs of a 3D printing laboratory must be balanced by the clinical benefits. It is expected that the number of 3D-printed models generated from DICOM images for planning interventions and fabricating implants will grow exponentially. Radiologists should at a minimum be familiar with 3D printing as it relates to their field, including types of 3D printing technologies and materials used to create 3D-printed anatomic models, published applications of models to date, and clinical benefits in radiology. Online supplemental material is available for this article. PMID:26562233
3D bioprinting of tissues and organs.
Murphy, Sean V; Atala, Anthony
2014-08-01
Additive manufacturing, otherwise known as three-dimensional (3D) printing, is driving major innovations in many areas, such as engineering, manufacturing, art, education and medicine. Recent advances have enabled 3D printing of biocompatible materials, cells and supporting components into complex 3D functional living tissues. 3D bioprinting is being applied to regenerative medicine to address the need for tissues and organs suitable for transplantation. Compared with non-biological printing, 3D bioprinting involves additional complexities, such as the choice of materials, cell types, growth and differentiation factors, and technical challenges related to the sensitivities of living cells and the construction of tissues. Addressing these complexities requires the integration of technologies from the fields of engineering, biomaterials science, cell biology, physics and medicine. 3D bioprinting has already been used for the generation and transplantation of several tissues, including multilayered skin, bone, vascular grafts, tracheal splints, heart tissue and cartilaginous structures. Other applications include developing high-throughput 3D-bioprinted tissue models for research, drug discovery and toxicology. PMID:25093879
Optically rewritable 3D liquid crystal displays.
Sun, J; Srivastava, A K; Zhang, W; Wang, L; Chigrinov, V G; Kwok, H S
2014-11-01
Optically rewritable liquid crystal display (ORWLCD) is a concept based on the optically addressed bi-stable display that does not need any power to hold the image after being uploaded. Recently, the demand for the 3D image display has increased enormously. Several attempts have been made to achieve 3D image on the ORWLCD, but all of them involve high complexity for image processing on both hardware and software levels. In this Letter, we disclose a concept for the 3D-ORWLCD by dividing the given image in three parts with different optic axis. A quarter-wave plate is placed on the top of the ORWLCD to modify the emerging light from different domains of the image in different manner. Thereafter, Polaroid glasses can be used to visualize the 3D image. The 3D image can be refreshed, on the 3D-ORWLCD, in one-step with proper ORWLCD printer and image processing, and therefore, with easy image refreshing and good image quality, such displays can be applied for many applications viz. 3D bi-stable display, security elements, etc. PMID:25361316
Computation of optimized arrays for 3-D electrical imaging surveys
NASA Astrophysics Data System (ADS)
Loke, M. H.; Wilkinson, P. B.; Uhlemann, S. S.; Chambers, J. E.; Oxby, L. S.
2014-12-01
3-D electrical resistivity surveys and inversion models are required to accurately resolve structures in areas with very complex geology where 2-D models might suffer from artefacts. Many 3-D surveys use a grid where the number of electrodes along one direction (x) is much greater than in the perpendicular direction (y). Frequently, due to limitations in the number of independent electrodes in the multi-electrode system, the surveys use a roll-along system with a small number of parallel survey lines aligned along the x-direction. The `Compare R' array optimization method previously used for 2-D surveys is adapted for such 3-D surveys. Offset versions of the inline arrays used in 2-D surveys are included in the number of possible arrays (the comprehensive data set) to improve the sensitivity to structures in between the lines. The array geometric factor and its relative error are used to filter out potentially unstable arrays in the construction of the comprehensive data set. Comparisons of the conventional (consisting of dipole-dipole and Wenner-Schlumberger arrays) and optimized arrays are made using a synthetic model and experimental measurements in a tank. The tests show that structures located between the lines are better resolved with the optimized arrays. The optimized arrays also have significantly better depth resolution compared to the conventional arrays.
Development of a 3D particle treecode for plasma simulations
NASA Astrophysics Data System (ADS)
Ong, Benjamin; Christlieb, Andrew; Krasny, Robert
2008-11-01
In this work we present a fully 3-D Boundary Integral Treecode (BIT). We apply the method to several classic problems such as sheath formation and 3D simulations of a Penning trap. In addition, we investigate the ability of the solver to naturally capture Coloumb scattering. A key point in the investigation is to understand the effect of different types of regularizations, and how to appropriately incorporate the regularization in the BIT framework. This work builds on substantial efforts in 1- and 2-D. [1] R. Krasny and K. Lindsay, A particle method and adaptive treecode for vortex sheet motion in 3-D flow, JCP, Vol. 172, No. 2, 879-907 [2] K. Matyash, R. Schneider, R. Sydora, and F. Taccogna, Application of a Grid-Free Kinetic Model to the Collisionless Sheath, Contrib. Plasma Phys, Vol. 48, No. 1-3, 116-120 (2008) [3] K. Cartwright and A. Christlieb, Boundary Integral Corrected Particle in Cell, SIAM Journal on Sci. Comput., submitted [4] A. Christlieb, R. Krasny, B. Ong and J. Qiu, A Step Towards Addressing Temporal Multi-scale Problems in Plasma Physics, in prep.
Towards a 3d Spatial Urban Energy Modelling Approach
NASA Astrophysics Data System (ADS)
Bahu, J.-M.; Koch, A.; Kremers, E.; Murshed, S. M.
2013-09-01
Today's needs to reduce the environmental impact of energy use impose dramatic changes for energy infrastructure and existing demand patterns (e.g. buildings) corresponding to their specific context. In addition, future energy systems are expected to integrate a considerable share of fluctuating power sources and equally a high share of distributed generation of electricity. Energy system models capable of describing such future systems and allowing the simulation of the impact of these developments thus require a spatial representation in order to reflect the local context and the boundary conditions. This paper describes two recent research approaches developed at EIFER in the fields of (a) geo-localised simulation of heat energy demand in cities based on 3D morphological data and (b) spatially explicit Agent-Based Models (ABM) for the simulation of smart grids. 3D city models were used to assess solar potential and heat energy demand of residential buildings which enable cities to target the building refurbishment potentials. Distributed energy systems require innovative modelling techniques where individual components are represented and can interact. With this approach, several smart grid demonstrators were simulated, where heterogeneous models are spatially represented. Coupling 3D geodata with energy system ABMs holds different advantages for both approaches. On one hand, energy system models can be enhanced with high resolution data from 3D city models and their semantic relations. Furthermore, they allow for spatial analysis and visualisation of the results, with emphasis on spatially and structurally correlations among the different layers (e.g. infrastructure, buildings, administrative zones) to provide an integrated approach. On the other hand, 3D models can benefit from more detailed system description of energy infrastructure, representing dynamic phenomena and high resolution models for energy use at component level. The proposed modelling strategies
Extra Dimensions: 3D in PDF Documentation
NASA Astrophysics Data System (ADS)
Graf, Norman A.
2012-12-01
Experimental science is replete with multi-dimensional information which is often poorly represented by the two dimensions of presentation slides and print media. Past efforts to disseminate such information to a wider audience have failed for a number of reasons, including a lack of standards which are easy to implement and have broad support. Adobe's Portable Document Format (PDF) has in recent years become the de facto standard for secure, dependable electronic information exchange. It has done so by creating an open format, providing support for multiple platforms and being reliable and extensible. By providing support for the ECMA standard Universal 3D (U3D) and the ISO PRC file format in its free Adobe Reader software, Adobe has made it easy to distribute and interact with 3D content. Until recently, Adobe's Acrobat software was also capable of incorporating 3D content into PDF files from a variety of 3D file formats, including proprietary CAD formats. However, this functionality is no longer available in Acrobat X, having been spun off to a separate company. Incorporating 3D content now requires the additional purchase of a separate plug-in. In this talk we present alternatives based on open source libraries which allow the programmatic creation of 3D content in PDF format. While not providing the same level of access to CAD files as the commercial software, it does provide physicists with an alternative path to incorporate 3D content into PDF files from such disparate applications as detector geometries from Geant4, 3D data sets, mathematical surfaces or tesselated volumes.