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Sample records for 3d complex plasma

  1. 3D bioprinting for engineering complex tissues.

    PubMed

    Mandrycky, Christian; Wang, Zongjie; Kim, Keekyoung; Kim, Deok-Ho

    2016-01-01

    Bioprinting is a 3D fabrication technology used to precisely dispense cell-laden biomaterials for the construction of complex 3D functional living tissues or artificial organs. While still in its early stages, bioprinting strategies have demonstrated their potential use in regenerative medicine to generate a variety of transplantable tissues, including skin, cartilage, and bone. However, current bioprinting approaches still have technical challenges in terms of high-resolution cell deposition, controlled cell distributions, vascularization, and innervation within complex 3D tissues. While no one-size-fits-all approach to bioprinting has emerged, it remains an on-demand, versatile fabrication technique that may address the growing organ shortage as well as provide a high-throughput method for cell patterning at the micrometer scale for broad biomedical engineering applications. In this review, we introduce the basic principles, materials, integration strategies and applications of bioprinting. We also discuss the recent developments, current challenges and future prospects of 3D bioprinting for engineering complex tissues. Combined with recent advances in human pluripotent stem cell technologies, 3D-bioprinted tissue models could serve as an enabling platform for high-throughput predictive drug screening and more effective regenerative therapies. PMID:26724184

  2. Complex light in 3D printing

    NASA Astrophysics Data System (ADS)

    Moser, Christophe; Delrot, Paul; Loterie, Damien; Morales Delgado, Edgar; Modestino, Miguel; Psaltis, Demetri

    2016-03-01

    3D printing as a tool to generate complicated shapes from CAD files, on demand, with different materials from plastics to metals, is shortening product development cycles, enabling new design possibilities and can provide a mean to manufacture small volumes cost effectively. There are many technologies for 3D printing and the majority uses light in the process. In one process (Multi-jet modeling, polyjet, printoptical©), a printhead prints layers of ultra-violet curable liquid plastic. Here, each nozzle deposits the material, which is then flooded by a UV curing lamp to harden it. In another process (Stereolithography), a focused UV laser beam provides both the spatial localization and the photo-hardening of the resin. Similarly, laser sintering works with metal powders by locally melting the material point by point and layer by layer. When the laser delivers ultra-fast focused pulses, nonlinear effects polymerize the material with high spatial resolution. In these processes, light is either focused in one spot and the part is made by scanning it or the light is expanded and covers a wide area for photopolymerization. Hence a fairly "simple" light field is used in both cases. Here, we give examples of how "complex light" brings additional level of complexity in 3D printing.

  3. First 3-D simulations of meteor plasma dynamics and turbulence

    NASA Astrophysics Data System (ADS)

    Oppenheim, Meers M.; Dimant, Yakov S.

    2015-02-01

    Millions of small but detectable meteors hit the Earth's atmosphere every second, creating trails of hot plasma that turbulently diffuse into the background atmosphere. For over 60 years, radars have detected meteor plasmas and used these signals to infer characteristics of the meteoroid population and upper atmosphere, but, despite the importance of meteor radar measurements, the complex processes by which these plasmas evolve have never been thoroughly explained or modeled. In this paper, we present the first fully 3-D simulations of meteor evolution, showing meteor plasmas developing instabilities, becoming turbulent, and inhomogeneously diffusing into the background ionosphere. These instabilities explain the characteristics and strength of many radar observations, in particular the high-resolution nonspecular echoes made by large radars. The simulations reveal how meteors create strong electric fields that dig out deep plasma channels along the Earth's magnetic fields. They also allow researchers to explore the impacts of the intense winds and wind shears, commonly found at these altitudes, on meteor plasma evolution. This study will allow the development of more sophisticated models of meteor radar signals, enabling the extraction of detailed information about the properties of meteoroid particles and the atmosphere.

  4. 3D Modeling of Equatorial Plasma Bubbles

    NASA Astrophysics Data System (ADS)

    Huba, Joseph; Joyce, Glenn; Krall, Jonathan

    2011-10-01

    Post-sunset ionospheric irregularities in the equatorial F region were first observed by Booker and Wells (1938) using ionosondes. This phenomenon has become known as equatorial spread F (ESF). During ESF the equatorial ionosphere becomes unstable because of a Rayleigh-Taylor-like instability: large scale (10s km) electron density ``bubbles'' can develop and rise to high altitudes (1000 km or greater at times). Understanding and modeling ESF is important because of its impact on space weather: it causes radio wave scintillation that degrades communication and navigation systems. In fact, it is the focus of of the Air Force Communications/Navigation Outage Forecast Satellite (C/NOFS) mission. We will describe 3D simulation results from the NRL ionosphere models SAMI3 and SAMI3/ESF of this phenomenon. In particular, we will examine the causes of the day-to-day ariability of ESF which is an unresolved problem at this time. Post-sunset ionospheric irregularities in the equatorial F region were first observed by Booker and Wells (1938) using ionosondes. This phenomenon has become known as equatorial spread F (ESF). During ESF the equatorial ionosphere becomes unstable because of a Rayleigh-Taylor-like instability: large scale (10s km) electron density ``bubbles'' can develop and rise to high altitudes (1000 km or greater at times). Understanding and modeling ESF is important because of its impact on space weather: it causes radio wave scintillation that degrades communication and navigation systems. In fact, it is the focus of of the Air Force Communications/Navigation Outage Forecast Satellite (C/NOFS) mission. We will describe 3D simulation results from the NRL ionosphere models SAMI3 and SAMI3/ESF of this phenomenon. In particular, we will examine the causes of the day-to-day ariability of ESF which is an unresolved problem at this time. Research supported by ONR.

  5. 3D Printing: 3D Printing of Highly Stretchable and Tough Hydrogels into Complex, Cellularized Structures.

    PubMed

    Hong, Sungmin; Sycks, Dalton; Chan, Hon Fai; Lin, Shaoting; Lopez, Gabriel P; Guilak, Farshid; Leong, Kam W; Zhao, Xuanhe

    2015-07-15

    X. Zhao and co-workers develop on page 4035 a new biocompatible hydrogel system that is extremely tough and stretchable and can be 3D printed into complex structures, such as the multilayer mesh shown. Cells encapsulated in the tough and printable hydrogel maintain high viability. 3D-printed structures of the tough hydrogel can sustain high mechanical loads and deformations. PMID:26172844

  6. 3-D seismic imaging of complex geologies

    SciTech Connect

    Womble, D.E.; Dosanjh, S.S.; VanDyke, J.P.; Oldfield, R.A.; Greenberg, D.S.

    1995-02-01

    We present three codes for the Intel Paragon that address the problem of three-dimensional seismic imaging of complex geologies. The first code models acoustic wave propagation and can be used to generate data sets to calibrate and validate seismic imaging codes. This code reported the fastest timings for acoustic wave propagation codes at a recent SEG (Society of Exploration Geophysicists) meeting. The second code implements a Kirchhoff method for pre-stack depth migration. Development of this code is almost complete, and preliminary results are presented. The third code implements a wave equation approach to seismic migration and is a Paragon implementation of a code from the ARCO Seismic Benchmark Suite.

  7. M3D project for simulation studies of plasmas

    SciTech Connect

    Park, W.; Belova, E.V.; Fu, G.Y.; Strauss, H.R.; Sugiyama, L.E.

    1998-12-31

    The M3D (Multi-level 3D) project carries out simulation studies of plasmas of various regimes using multi-levels of physics, geometry, and mesh schemes in one code package. This paper and papers by Strauss, Sugiyama, and Belova in this workshop describe the project, and present examples of current applications. The currently available physics models of the M3D project are MHD, two-fluids, gyrokinetic hot particle/MHD hybrid, and gyrokinetic particle ion/two-fluid hybrid models. The code can be run with both structured and unstructured meshes.

  8. Slope instability in complex 3D topography promoted by convergent 3D groundwater flow

    NASA Astrophysics Data System (ADS)

    Reid, M. E.; Brien, D. L.

    2012-12-01

    Slope instability in complex topography is generally controlled by the interaction between gravitationally induced stresses, 3D strengths, and 3D pore-fluid pressure fields produced by flowing groundwater. As an example of this complexity, coastal bluffs sculpted by landsliding commonly exhibit a progression of undulating headlands and re-entrants. In this landscape, stresses differ between headlands and re-entrants and 3D groundwater flow varies from vertical rainfall infiltration to lateral groundwater flow on lower permeability layers with subsequent discharge at the curved bluff faces. In plan view, groundwater flow converges in the re-entrant regions. To investigate relative slope instability induced by undulating topography, we couple the USGS 3D limit-equilibrium slope-stability model, SCOOPS, with the USGS 3D groundwater flow model, MODFLOW. By rapidly analyzing the stability of millions of potential failures, the SCOOPS model can determine relative slope stability throughout the 3D domain underlying a digital elevation model (DEM), and it can utilize both fully 3D distributions of pore-water pressure and material strength. The two models are linked by first computing a groundwater-flow field in MODFLOW, and then computing stability in SCOOPS using the pore-pressure field derived from groundwater flow. Using these two models, our analyses of 60m high coastal bluffs in Seattle, Washington showed augmented instability in topographic re-entrants given recharge from a rainy season. Here, increased recharge led to elevated perched water tables with enhanced effects in the re-entrants owing to convergence of groundwater flow. Stability in these areas was reduced about 80% compared to equivalent dry conditions. To further isolate these effects, we examined groundwater flow and stability in hypothetical landscapes composed of uniform and equally spaced, oscillating headlands and re-entrants with differing amplitudes. The landscapes had a constant slope for both

  9. Capacitance extraction from complex 3D interconnect structures

    SciTech Connect

    Cartwright, D.; Csanak, G.; George, D.; Walker, R.; Kuprat, A.; Dengi, A.; Grobman, W.

    1999-06-01

    A new tool has been developed for calculating the capacitance matrix for complex 3D interconnect structures involving multiple layers of irregularly shaped interconnect, imbedded in different dielectric materials. This method utilizes a new 3D adaptive unstructured grid capability, and a linear finite element algorithm. The capacitance is determined from the minimum in the total system energy as the nodes are varied to minimize the error in the electric field in the dielectric(s).

  10. Low Complexity Mode Decision for 3D-HEVC

    PubMed Central

    Li, Nana; Gan, Yong

    2014-01-01

    High efficiency video coding- (HEVC-) based 3D video coding (3D-HEVC) developed by joint collaborative team on 3D video coding (JCT-3V) for multiview video and depth map is an extension of HEVC standard. In the test model of 3D-HEVC, variable coding unit (CU) size decision and disparity estimation (DE) are introduced to achieve the highest coding efficiency with the cost of very high computational complexity. In this paper, a fast mode decision algorithm based on variable size CU and DE is proposed to reduce 3D-HEVC computational complexity. The basic idea of the method is to utilize the correlations between depth map and motion activity in prediction mode where variable size CU and DE are needed, and only in these regions variable size CU and DE are enabled. Experimental results show that the proposed algorithm can save about 43% average computational complexity of 3D-HEVC while maintaining almost the same rate-distortion (RD) performance. PMID:25254237

  11. 3D stereolithography printing of graphene oxide reinforced complex architectures.

    PubMed

    Lin, Dong; Jin, Shengyu; Zhang, Feng; Wang, Chao; Wang, Yiqian; Zhou, Chi; Cheng, Gary J

    2015-10-30

    Properties of polymer based nanocomposites reply on distribution, concentration, geometry and property of nanofillers in polymer matrix. Increasing the concentration of carbon based nanomaterials, such as CNTs, in polymer matrix often results in stronger but more brittle material. Here, we demonstrated the first three-dimensional (3D) printed graphene oxide complex structures by stereolithography with good combination of strength and ductility. With only 0.2% GOs, the tensile strength is increased by 62.2% and elongation increased by 12.8%. Transmission electron microscope results show that the GOs were randomly aligned in the cross section of polymer. We investigated the strengthening mechanism of the 3D printed structure in terms of tensile strength and Young's modulus. It is found that an increase in ductility of the 3D printed nanocomposites is related to increase in crystallinity of GOs reinforced polymer. Compression test of 3D GOs structure reveals the metal-like failure model of GOs nanocomposites. PMID:26443263

  12. 3D Gel Map of Arabidopsis Complex I

    PubMed Central

    Peters, Katrin; Belt, Katharina; Braun, Hans-Peter

    2013-01-01

    Complex I has a unique structure in plants and includes extra subunits. Here, we present a novel study to define its protein constituents. Mitochondria were isolated from Arabidopsis thaliana cell cultures, leaves, and roots. Subunits of complex I were resolved by 3D blue-native (BN)/SDS/SDS-PAGE and identified by mass spectrometry. Overall, 55 distinct proteins were found, seven of which occur in pairs of isoforms. We present evidence that Arabidopsis complex I consists of 49 distinct types of subunits, 40 of which represent homologs of bovine complex I. The nine other subunits represent special proteins absent in the animal linage of eukaryotes, most prominently a group of subunits related to bacterial gamma-type carbonic anhydrases. A GelMap http://www.gelmap.de/arabidopsis-3d-complex-i/ is presented for promoting future complex I research in Arabidopsis thaliana. PMID:23761796

  13. Development of a 3D particle treecode for plasma simulations

    NASA Astrophysics Data System (ADS)

    Ong, Benjamin; Christlieb, Andrew; Krasny, Robert

    2008-11-01

    In this work we present a fully 3-D Boundary Integral Treecode (BIT). We apply the method to several classic problems such as sheath formation and 3D simulations of a Penning trap. In addition, we investigate the ability of the solver to naturally capture Coloumb scattering. A key point in the investigation is to understand the effect of different types of regularizations, and how to appropriately incorporate the regularization in the BIT framework. This work builds on substantial efforts in 1- and 2-D. [1] R. Krasny and K. Lindsay, A particle method and adaptive treecode for vortex sheet motion in 3-D flow, JCP, Vol. 172, No. 2, 879-907 [2] K. Matyash, R. Schneider, R. Sydora, and F. Taccogna, Application of a Grid-Free Kinetic Model to the Collisionless Sheath, Contrib. Plasma Phys, Vol. 48, No. 1-3, 116-120 (2008) [3] K. Cartwright and A. Christlieb, Boundary Integral Corrected Particle in Cell, SIAM Journal on Sci. Comput., submitted [4] A. Christlieb, R. Krasny, B. Ong and J. Qiu, A Step Towards Addressing Temporal Multi-scale Problems in Plasma Physics, in prep.

  14. Intermittent Dissipation and Heating in 3D Kinetic Plasma Turbulence.

    PubMed

    Wan, M; Matthaeus, W H; Roytershteyn, V; Karimabadi, H; Parashar, T; Wu, P; Shay, M

    2015-05-01

    High resolution, fully kinetic, three dimensional (3D) simulation of collisionless plasma turbulence shows the development of turbulence characterized by sheetlike current density structures spanning a range of scales. The nonlinear evolution is initialized with a long wavelength isotropic spectrum of fluctuations having polarizations transverse to an imposed mean magnetic field. We present evidence that these current sheet structures are sites for heating and dissipation, and that stronger currents signify higher dissipation rates. The analyses focus on quantities such as J·E, electron, and proton temperatures, and conditional averages of these quantities based on local electric current density. Evidently, kinetic scale plasma, like magnetohydrodynamics, becomes intermittent due to current sheet formation, leading to the expectation that heating and dissipation in astrophysical and space plasmas may be highly nonuniform. Comparison with previous results from 2D kinetic simulations, as well as high frequency solar wind observational data, are discussed. PMID:25978241

  15. 3D model of amphioxus steroid receptor complexed with estradiol

    SciTech Connect

    Baker, Michael E.; Chang, David J.

    2009-08-28

    The origins of signaling by vertebrate steroids are not fully understood. An important advance was the report that an estrogen-binding steroid receptor [SR] is present in amphioxus, a basal chordate with a similar body plan as vertebrates. To investigate the evolution of estrogen-binding to steroid receptors, we constructed a 3D model of amphioxus SR complexed with estradiol. This 3D model indicates that although the SR is activated by estradiol, some interactions between estradiol and human ER{alpha} are not conserved in the SR, which can explain the low affinity of estradiol for the SR. These differences between the SR and ER{alpha} in the steroid-binding domain are sufficient to suggest that another steroid is the physiological regulator of the SR. The 3D model predicts that mutation of Glu-346 to Gln will increase the affinity of testosterone for amphioxus SR and elucidate the evolution of steroid-binding to nuclear receptors.

  16. Simulation of Current Generation in a 3-D Plasma Model

    NASA Astrophysics Data System (ADS)

    Tsung, F. S.; Dawson, J. M.

    1996-11-01

    In the advanced tokamak regime, transport phenomena can account for a signficant fraction of the toroidal current, possibly over that driven directly by the ohmic heating electric fields. Bootstrap theory accounts for contributions of the collisional modification of banana orbits on the toroidal currents. In our previous simulations in 21/2-D, currents were spontaneously generated in both the cylindrical and the toroidal geometries, contrary to neoclassical predictions. In these calculations, it was believed that the driving mechanism is the preferential loss of particles whose initial velocity is opposite to that of the plasma current. We are extending these simulations to three dimensions. A parallel 3-D electromagnetic PIC code running on the IBM SP2, with a localized field-solver has been developed to investigate the effects of perturbations parallel to the field lines, and direct comparisons has been made between the 21/2-D and 3-D simulations and we have found good agreements between the 2 1/2-D calculations and the 3-D results. We will present our new results at the meeting. Research partially supported by NSF and DOE.

  17. Intermittent dissipation and heating in 3D kinetic plasma turbulence

    NASA Astrophysics Data System (ADS)

    Wan, M.; Matthaeus, W. H.; Roytershteyn, V.; Karimabadi, H.; Parashar, T.; Wu, P.; Shay, M. A.

    2014-12-01

    The nature of collisionless dissipation has been hotlydebated in recent years, with alternative ideas posed interms of various wave modes, such as kinetic Alfven waves,whistlers, linear Vlasov instabilities, cyclotron resonance,and Landau damping. Here we use large scale, fully kinetic3D simulations of collisionless plasma turbulence which showthe development of turbulence characterized by sheet-likecurrent density structures spanning a range of scales.We present evidence that these structures are sites for heatingand dissipation, and that stronger current structures signifyhigher dissipation rates. The analyses focus on quantities such as J.E, electron and proton temperatures, and PVI of the magnetic field. Evidently, kinetic scale plasma,like magnetohydrodynamics, becomes intermittent due tocurrent sheet formation, leading to the expectationthat heating and dissipation in astrophysical and space plasmasmay be highly nonuniform. Comparison with previousresults from 2D kinetic simulations, as well as high frequencysolar wind observational data will also be discussed.

  18. Insights into Plasma Etch Profile Evolution with 3D Profile Simulation

    NASA Astrophysics Data System (ADS)

    Sriraman, Saravanapriyan; Paterson, Alex; Zhang, Yiting; Kushner, Mark

    2014-10-01

    Plasma etching is critical for pattern transfer in microelectronics fabrication. For planar devices, efforts in 2D etch profile simulations were sufficient to understand critical etch process mechanisms. In contrast, to understand the complex mechanisms in etching 3D structures of current technology nodes such as FinFETs, 2D profile simulators are inadequate. In this paper, we report on development of a 3D profile simulation platform, the Monte Carlo Feature Profile Model (MCFPM-3D). The MCFPM-3D builds upon the 2D MCFPM platform that includes aspects such as mixing, implantation, and photon assisted processes and addresses reaction mechanisms in surface etching, sputtering, and deposition to predict profile evolution. Model inputs include fluxes of species from plasma derived from the Hybrid Plasma Equipment Model (HPEM). Test cases of Si/SiO2 etching in Ar/Cl2 and Ar/CF4/O2 plasmas for representative 2D/3D feature topographies are considered and phenomena such as selectivity and aspect ratio dependent etching will be discussed.

  19. Complex flow dynamics around 3D microbot prototypes.

    PubMed

    Martínez-Aranda, Sergio; Galindo-Rosales, Francisco J; Campo-Deaño, Laura

    2016-02-28

    A new experimental setup for the study of the complex flow dynamics around 3D microbot prototypes in a straight microchannel has been developed and assessed. The ultimate aim of this work is focused on the analysis of the morphology of different microbot prototypes to get a better insight into their efficiency when they swim through the main conduits of the human circulatory system. The setup consists of a fused silica straight microchannel with a 3D microbot prototype fastened in the center of the channel cross-section by an extremely thin support. Four different prototypes were considered: a cube, a sphere and two ellipsoids with aspect ratios of 1 : 2 and 1 : 4, respectively. Flow visualization and micro-particle image velocimetry (μPIV) measurements were performed using Newtonian and viscoelastic blood analogue fluids. An efficiency parameter, ℑ, to discriminate the prototypes in terms of flow disturbance has been proposed. PMID:26790959

  20. Reassessing Geophysical Models of the Bushveld Complex in 3D

    NASA Astrophysics Data System (ADS)

    Cole, J.; Webb, S. J.; Finn, C.

    2012-12-01

    Conceptual geophysical models of the Bushveld Igneous Complex show three possible geometries for its mafic component: 1) Separate intrusions with vertical feeders for the eastern and western lobes (Cousins, 1959) 2) Separate dipping sheets for the two lobes (Du Plessis and Kleywegt, 1987) 3) A single saucer-shaped unit connected at depth in the central part between the two lobes (Cawthorn et al, 1998) Model three incorporates isostatic adjustment of the crust in response to the weight of the dense mafic material. The model was corroborated by results of a broadband seismic array over southern Africa, known as the Southern African Seismic Experiment (SASE) (Nguuri, et al, 2001; Webb et al, 2004). This new information about the crustal thickness only became available in the last decade and could not be considered in the earlier models. Nevertheless, there is still on-going debate as to which model is correct. All of the models published up to now have been done in 2 or 2.5 dimensions. This is not well suited to modelling the complex geometry of the Bushveld intrusion. 3D modelling takes into account effects of variations in geometry and geophysical properties of lithologies in a full three dimensional sense and therefore affects the shape and amplitude of calculated fields. The main question is how the new knowledge of the increased crustal thickness, as well as the complexity of the Bushveld Complex, will impact on the gravity fields calculated for the existing conceptual models, when modelling in 3D. The three published geophysical models were remodelled using full 3Dl potential field modelling software, and including crustal thickness obtained from the SASE. The aim was not to construct very detailed models, but to test the existing conceptual models in an equally conceptual way. Firstly a specific 2D model was recreated in 3D, without crustal thickening, to establish the difference between 2D and 3D results. Then the thicker crust was added. Including the less

  1. Complexity of knotting in chaotic 3D eigenfunctions

    NASA Astrophysics Data System (ADS)

    Taylor, Alexander; Dennis, Mark

    Quantised vortices occur generically in disordered 3D complex scalar fields, forming a geometrically complex and statistically random large scale tangle even in systems with very different origins of complexity such as turbulent superfluids, optical volume speckle, the quantum eigenfunctions of chaotic 3D cavities, and liquid crystal phases. Although all such systems are random and fractal on large scales, it has previously been established that topological measures such as the probability of vortices knotting or linking with one another are sensitive to the local physics. We use the wave chaos as a universal model system with just one physical lengthscale, the wavelength, beyond which its vortices are Brownian. To access finite-volume realisations of wavefields, vortices are traced numerically in three different random degenerate eigenfunction systems, each approximating the random isotropic limit but with different constraints and symmetries that significantly impact topological statistics even at high energies. By a simple mode counting argument, we observe that the probability of a generic eigenfunction containing a knotted vortex line reaches 50% by around its 1000-3000th mode.

  2. 3D characterization of stromatolites and the emergence of complexity

    NASA Astrophysics Data System (ADS)

    Storrie-Lombardi, Michael C.; Awramik, Stanley M.; Nesson, John

    2008-08-01

    Stromatolites offer a unique fossil record across 3.5 Ga of microbial community evolution within the context of an evolving Earth. Our interest is in developing quantitative metrics to follow the evolution of stromatolite morphological complexity. Adopting the canonical definition of complexity as the emergence of previously unseen properties in a dynamic phenomenon, we have previously proposed in these proceedings that laminations are the defining emergent property of stromatolites and we have employed a set of statistical information metrics to quantify laminae complexity in two spatial dimensions. We now demonstrate computer x-ray tomography of stromatolites and discuss the advantages of this 3D volume density distribution technique for characterizing stromatolite samples. CT imaging makes it possible to create a virtual stromatolite, enabling both research and educational efforts previously hampered by the costs of obtaining, preparing, and distributing precious Archean stromatolite fossils. We discuss recent advances in instrument miniaturization making it feasible to provide nondestructive 3D density and elemental abundance information on endolithic geobiological targets during future manned and unmanned missions to Mars.

  3. Gold Nanoparticle Synthesis by 3D Integrated Micro-solution Plasma in a 3D Printed Artificial Porous Dielectric Material

    NASA Astrophysics Data System (ADS)

    Sotoda, Naoya; Tanaka, Kenji; Shirafuji, Tatsuru

    2015-09-01

    Plasma in contact with HAuCl4 aqueous solution can promote the synthesis of gold nanoparticles. To scale up this process, we have developed 3D integrated micro-solution plasma (3D IMSP). It can generate a large number of argon microplasmas in contact with the aqueous solution flowing in a porous dielectric material. The porous dielectric material in our prototype 3D IMSP reactor, however, consists of non-regularly arranged random-sized pores. These pore parameters may be the parameters for controlling the size and dispersion of synthesized gold nanoparticles. We have hence fabricated a 3D IMSP reactor with an artificial porous dielectric material that has regularly arranged same-sized pores by using a 3D printer. We have applied the reactor to the gold- nanoparticle synthesis. We have confirmed the synthesis of gold nanoparticles through the observation of a plasmon resonance absorption peak at 550 nm in the HAuCl4 aqueous solution treated with 3D IMSP. The size and distribution of the synthesized gold nanoparticles are under investigation. We expect that these characteristics of the gold nanoparticles can be manipulated by changing pore size and their distribution in the porous dielectric material.

  4. Dynamics of tokamak plasma surface current in 3D ideal MHD model

    NASA Astrophysics Data System (ADS)

    Galkin, Sergei A.; Svidzinski, V. A.; Zakharov, L. E.

    2013-10-01

    Interest in the surface current which can arise on perturbed sharp plasma vacuum interface in tokamaks was recently generated by a few papers (see and references therein). In dangerous disruption events with plasma-touching-wall scenarios, the surface current can be shared with the wall leading to the strong, damaging forces acting on the wall A relatively simple analytic definition of δ-function surface current proportional to a jump of tangential component of magnetic field nevertheless leads to a complex computational problem on the moving plasma-vacuum interface, requiring the incorporation of non-linear 3D plasma dynamics even in one-fluid ideal MHD. The Disruption Simulation Code (DSC), which had recently been developed in a fully 3D toroidal geometry with adaptation to the moving plasma boundary, is an appropriate tool for accurate self-consistent δfunction surface current calculation. Progress on the DSC-3D development will be presented. Self-consistent surface current calculation under non-linear dynamics of low m kink mode and VDE will be discussed. Work is supported by the US DOE SBIR grant #DE-SC0004487.

  5. Hough-based recognition of complex 3-D road scenes

    NASA Astrophysics Data System (ADS)

    Foresti, Gian L.; Regazzoni, Carlo S.

    1992-02-01

    In this paper, we address the problem of the object recognition in a complex 3-D scene by detecting the 2-D object projection on the image-plane for an autonomous vehicle driving; in particular, the problems of road detection and obstacle avoidance in natural road scenes are investigated. A new implementation of the Hough Transform (HT), called Labeled Hough Transform (LHT), to extract and group symbolic features is here presented; the novelty of this method, in respect to the traditional approach, consists in the capability of splitting a maximum in the parameter space into noncontiguous segments, while performing voting. Results are presented on a road image containing obstacles which show the efficiency, good quality, and time performances of the algorithm.

  6. Measurements of 3D slip velocities and plasma column lengths of a gliding arc discharge

    SciTech Connect

    Zhu, Jiajian; Gao, Jinlong; Ehn, Andreas; Aldén, Marcus; Li, Zhongshan E-mail: alpers@ma.tum.de; Moseev, Dmitry; Kusano, Yukihiro; Salewski, Mirko; Alpers, Andreas E-mail: alpers@ma.tum.de; Gritzmann, Peter; Schwenk, Martin

    2015-01-26

    A non-thermal gliding arc discharge was generated at atmospheric pressure in an air flow. The dynamics of the plasma column and tracer particles were recorded using two synchronized high-speed cameras. Whereas the data analysis for such systems has previously been performed in 2D (analyzing the single camera image), we provide here a 3D data analysis that includes 3D reconstructions of the plasma column and 3D particle tracking velocimetry based on discrete tomography methods. The 3D analysis, in particular, the determination of the 3D slip velocity between the plasma column and the gas flow, gives more realistic insight into the convection cooling process. Additionally, with the determination of the 3D slip velocity and the 3D length of the plasma column, we give more accurate estimates for the drag force, the electric field strength, the power per unit length, and the radius of the conducting zone of the plasma column.

  7. Polygonal Shapes Detection in 3d Models of Complex Architectures

    NASA Astrophysics Data System (ADS)

    Benciolini, G. B.; Vitti, A.

    2015-02-01

    A sequential application of two global models defined on a variational framework is proposed for the detection of polygonal shapes in 3D models of complex architectures. As a first step, the procedure involves the use of the Mumford and Shah (1989) 1st-order variational model in dimension two (gridded height data are processed). In the Mumford-Shah model an auxiliary function detects the sharp changes, i.e., the discontinuities, of a piecewise smooth approximation of the data. The Mumford-Shah model requires the global minimization of a specific functional to simultaneously produce both the smooth approximation and its discontinuities. In the proposed procedure, the edges of the smooth approximation derived by a specific processing of the auxiliary function are then processed using the Blake and Zisserman (1987) 2nd-order variational model in dimension one (edges are processed in the plane). This second step permits to describe the edges of an object by means of piecewise almost-linear approximation of the input edges themselves and to detects sharp changes of the first-derivative of the edges so to detect corners. The Mumford-Shah variational model is used in two dimensions accepting the original data as primary input. The Blake-Zisserman variational model is used in one dimension for the refinement of the description of the edges. The selection among all the boundaries detected by the Mumford-Shah model of those that present a shape close to a polygon is performed by considering only those boundaries for which the Blake-Zisserman model identified discontinuities in their first derivative. The output of the procedure are hence shapes, coming from 3D geometric data, that can be considered as polygons. The application of the procedure is suitable for, but not limited to, the detection of objects such as foot-print of polygonal buildings, building facade boundaries or windows contours. v The procedure is applied to a height model of the building of the Engineering

  8. Extension of RCC Topological Relations for 3d Complex Objects Components Extracted from 3d LIDAR Point Clouds

    NASA Astrophysics Data System (ADS)

    Xing, Xu-Feng; Abolfazl Mostafavia, Mir; Wang, Chen

    2016-06-01

    Topological relations are fundamental for qualitative description, querying and analysis of a 3D scene. Although topological relations for 2D objects have been extensively studied and implemented in GIS applications, their direct extension to 3D is very challenging and they cannot be directly applied to represent relations between components of complex 3D objects represented by 3D B-Rep models in R3. Herein we present an extended Region Connection Calculus (RCC) model to express and formalize topological relations between planar regions for creating 3D model represented by Boundary Representation model in R3. We proposed a new dimension extended 9-Intersection model to represent the basic relations among components of a complex object, including disjoint, meet and intersect. The last element in 3*3 matrix records the details of connection through the common parts of two regions and the intersecting line of two planes. Additionally, this model can deal with the case of planar regions with holes. Finally, the geometric information is transformed into a list of strings consisting of topological relations between two planar regions and detailed connection information. The experiments show that the proposed approach helps to identify topological relations of planar segments of point cloud automatically.

  9. 3D Particle-In-Cell (PIC) simulations of plasma sheath formation above lunar craters

    NASA Astrophysics Data System (ADS)

    Likhanskii, A.; Poppe, A. R.; Piquette, M.; Amyx, K.; Messmer, P.; Horanyi, M.

    2010-12-01

    Comprehensive investigation of plasma sheath formation and consequent dust levitation on lunar surface is important for interpretation of results of future lunar missions (such as LADEE and ARTEMIS). Until recently, most of such studies were done in experimental laboratories at reduced scales. Due to the complexity and nonlinearity of the problem, only simplified theories, describing this effect, were developed. However, recent progress in high-performance kinetic plasma simulations allowed tackling the problem of plasma sheath formation numerically. In this poster we will present the simulation results of plasma sheath formation above the lunar craters in presence of solar wind and photoelectron emission. These results were obtained using 3D Particle-In-Cell (PIC) code VORPAL. In the simulations we considered plasma sheath formation for normal, 45 and 90 degree incidence solar wind. Sample distribution of electric field in plasma sheath is shown in Figure 1. In the second part of the poster, we will present results of simulations of the LASP (Laboratory for Atmospheric and Space Physics at University of Colorado) experiments on study of plasma sheath formation above hemispherical isolated dimple. Figure 1. Electric field distribution in the plasma sheath above the lunar crater

  10. Volumetric image display for complex 3D data visualization

    NASA Astrophysics Data System (ADS)

    Tsao, Che-Chih; Chen, Jyh Shing

    2000-05-01

    A volumetric image display is a new display technology capable of displaying computer generated 3D images in a volumetric space. Many viewers can walk around the display and see the image from omni-directions simultaneously without wearing any glasses. The image is real and possesses all major elements in both physiological and psychological depth cues. Due to the volumetric nature of its image, the VID can provide the most natural human-machine interface in operations involving 3D data manipulation and 3D targets monitoring. The technology creates volumetric 3D images by projecting a series of profiling images distributed in the space form a volumetric image because of the after-image effect of human eyes. Exemplary applications in biomedical image visualization were tested on a prototype display, using different methods to display a data set from Ct-scans. The features of this display technology make it most suitable for applications that require quick understanding of the 3D relations, need frequent spatial interactions with the 3D images, or involve time-varying 3D data. It can also be useful for group discussion and decision making.

  11. 3D simulation studies of tokamak plasmas using MHD and extended-MHD models

    SciTech Connect

    Park, W.; Chang, Z.; Fredrickson, E.; Fu, G.Y.

    1996-12-31

    The M3D (Multi-level 3D) tokamak simulation project aims at the simulation of tokamak plasmas using a multi-level tokamak code package. Several current applications using MHD and Extended-MHD models are presented; high-{beta} disruption studies in reversed shear plasmas using the MHD level MH3D code, {omega}{sub *i} stabilization and nonlinear island saturation of TAE mode using the hybrid particle/MHD level MH3D-K code, and unstructured mesh MH3D{sup ++} code studies. In particular, three internal mode disruption mechanisms are identified from simulation results which agree which agree well with experimental data.

  12. MHD Modeling in Complex 3D Geometries: Towards Predictive Simulation of SIHI Current Drive

    NASA Astrophysics Data System (ADS)

    Hansen, Christopher James

    The HIT-SI experiment studies Steady Inductive Helicity Injection (SIHI) for the purpose of forming and sustaining a spheromak plasma. A spheromak is formed in a nearly axisymmetric flux conserver, with a bow tie cross section, by means of two semi-toroidal injectors. The plasma-facing surfaces of the device, which are made of copper for its low resistivity, are covered in an insulating coating in order to operate in a purely inductive manner. Following formation, the spheromak flux and current are increased during a quiescent period marked by a decrease in the global mode activity. A proposed mechanism, Imposed Dynamo Current Drive (IDCD), is expected to be responsible for this phase of quiescent current drive. Due to the geometric complexity of the experiment, previous numerical modeling efforts have used a simplified geometry that excludes the injector volumes from the simulated domain. The effect of helicity injection is then modeled by boundary conditions on this reduced plasma volume. The work presented here has explored and developed more complete computational models of the HIT-SI device. This work is separated into 3 distinct but complementary areas: 1) Development of a 3D MHD equilibrium code that can incorporate the non-axisymmetric injector fields present in HIT-SI and investigation of equilibria of interest during spheromak sustainment. 2) A 2D axisymmetric MHD equilibrium code that was used to explore reduced order models for mean-field evolution using equations derived from IDCD theory including coupling to 3D equilibria. 3) A 3D time-dependent non-linear MHD code that is capable of modeling the entire plasma volume including dynamics within the injectors. Although HIT-SI was the motivation for, and experiment studied in this research, the tools and methods developed are general --- allowing their application to a broad range of magnetic confinement experiments. These tools constitute a significant advance for modeling plasma dynamics in devices with

  13. Automated building of organometallic complexes from 3D fragments.

    PubMed

    Foscato, Marco; Venkatraman, Vishwesh; Occhipinti, Giovanni; Alsberg, Bjørn K; Jensen, Vidar R

    2014-07-28

    A method for the automated construction of three-dimensional (3D) molecular models of organometallic species in design studies is described. Molecular structure fragments derived from crystallographic structures and accurate molecular-level calculations are used as 3D building blocks in the construction of multiple molecular models of analogous compounds. The method allows for precise control of stereochemistry and geometrical features that may otherwise be very challenging, or even impossible, to achieve with commonly available generators of 3D chemical structures. The new method was tested in the construction of three sets of active or metastable organometallic species of catalytic reactions in the homogeneous phase. The performance of the method was compared with those of commonly available methods for automated generation of 3D models, demonstrating higher accuracy of the prepared 3D models in general, and, in particular, a much wider range with respect to the kind of chemical structures that can be built automatically, with capabilities far beyond standard organic and main-group chemistry. PMID:24998944

  14. Modeling of Localized Neutral Particle Sources in 3D Edge Plasmas

    SciTech Connect

    Umansky, M V; Rognlien, T D; Fenstermacher, M E; Borchardt, M; Mutzke, A; Riemann, J; Schneider, R; Owen, L W

    2002-05-23

    A new edge plasma code BoRiS [1] has a fully 3D fluid plasma model. We supplement BoRiS with a 3D fluid neutral model including equations for parallel momentum and collisional perpendicular diffusion. This makes BoRiS an integrated plasma-neutral model suitable for a variety of applications. We present modeling results for a localized gas source in the geometry of the NCSX stellarator.

  15. Plasma penetration depth and mechanical properties of atmospheric plasma-treated 3D aramid woven composites

    NASA Astrophysics Data System (ADS)

    Chen, X.; Yao, L.; Xue, J.; Zhao, D.; Lan, Y.; Qian, X.; Wang, C. X.; Qiu, Y.

    2008-12-01

    Three-dimensional aramid woven fabrics were treated with atmospheric pressure plasmas, on one side or both sides to determine the plasma penetration depth in the 3D fabrics and the influences on final composite mechanical properties. The properties of the fibers from different layers of the single side treated fabrics, including surface morphology, chemical composition, wettability and adhesion properties were investigated using scanning electron microscopy (SEM), X-ray photoelectron spectroscopy (XPS), contact angle measurement and microbond tests. Meanwhile, flexural properties of the composites reinforced with the fabrics untreated and treated on both sides were compared using three-point bending tests. The results showed that the fibers from the outer most surface layer of the fabric had a significant improvement in their surface roughness, chemical bonding, wettability and adhesion properties after plasma treatment; the treatment effect gradually diminished for the fibers in the inner layers. In the third layer, the fiber properties remained approximately the same to those of the control. In addition, three-point bending tests indicated that the 3D aramid composite had an increase of 11% in flexural strength and 12% in flexural modulus after the plasma treatment. These results indicate that composite mechanical properties can be improved by the direct fabric treatment instead of fiber treatment with plasmas if the fabric is less than four layers thick.

  16. Unlocking the scientific potential of complex 3D point cloud dataset : new classification and 3D comparison methods

    NASA Astrophysics Data System (ADS)

    Lague, D.; Brodu, N.; Leroux, J.

    2012-12-01

    Ground based lidar and photogrammetric techniques are increasingly used to track the evolution of natural surfaces in 3D at an unprecedented resolution and precision. The range of applications encompass many type of natural surfaces with different geometries and roughness characteristics (landslides, cliff erosion, river beds, bank erosion,....). Unravelling surface change in these contexts requires to compare large point clouds in 2D or 3D. The most commonly used method in geomorphology is based on a 2D difference of the gridded point clouds. Yet this is hardly adapted to many 3D natural environments such as rivers (with horizontal beds and vertical banks), while gridding complex rough surfaces is a complex task. On the other hand, tools allowing to perform 3D comparison are scarce and may require to mesh the point clouds which is difficult on rough natural surfaces. Moreover, existing 3D comparison tools do not provide an explicit calculation of confidence intervals that would factor in registration errors, roughness effects and instrument related position uncertainties. To unlock this problem, we developed the first algorithm combining a 3D measurement of surface change directly on point clouds with an estimate of spatially variable confidence intervals (called M3C2). The method has two steps : (1) surface normal estimation and orientation in 3D at a scale consistent with the local roughness ; (2) measurement of mean surface change along the normal direction with explicit calculation of a local confidence interval. Comparison with existing 3D methods based on a closest-point calculation demonstrates the higher precision of the M3C2 method when mm changes needs to be detected. The M3C2 method is also simple to use as it does not require surface meshing or gridding, and is not sensitive to missing data or change in point density. We also present a 3D classification tool (CANUPO) for vegetation removal based on a new geometrical measure: the multi

  17. 3D Hybrid Simulation of the Titan's Plasma Environment

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Sittler, E. C.; Hartle, R. E.

    2007-05-01

    Titan plays an important role as a simulation laboratory for multiscale kinetic plasma processes which are key processes in space and laboratory plasmas. A development of multiscale combined numerical methods allows us to use more realistic plasma models at Titan. In this report, we describe a Particle-Ion--Fluid-Ion--Fluid- Electron method of kinetic ion-neutral simulation code (see, e.g. [Lipatov, 2002]). This method takes into account charge-exchange and photoionization processes. The model of atmosphere of Titan was based on a paper by Sittler, Hartle, Vinas et al., [2005]. The background ions H+, O+ and pickup ions H2+, CH4+ and N2+ are described in a kinetic approximation, where the electrons are approximated as a fluid. In this report we study the coupling between background ions and pickup ions on the multiple space scales determined by the ion gyroradiis. The first results of such a simulation of the dynamics of ions near Titan are discussed in this report and compared with recent measurements made by the Cassini Plasma Spectrometer (CAPS, [Hartle, Sittler et al., 2006]). E C Sittler Jr., R E Hartle, A F Vinas, R E Johnson, H T Smith and I Mueller-Wodarg, J. Geophys. Res., 110, A09302, 2005. R. E. Hartle, E. C. Sittler, F. M. Neubauer, R. E. Johnson, et al., Planet. Space Sci., 54, 1211, 2006. A S Lipatov, The Hybrid Multiscale Simulation Technology. An Introduction with Application to Astrophysical and Laboratory Plasmas, Springer-Verlag, Berlin, Heidelberg, New York, 2002, p.p. 1-403.

  18. 3-D Simulations of Plasma Wakefield Acceleration with Non-Idealized Plasmas and Beams

    SciTech Connect

    Deng, S.; Katsouleas, T.; Lee, S.; Muggli, P.; Mori, W.B.; Hemker, R.; Ren, C.; Huang, C.; Dodd, E.; Blue, B.E.; Clayton, C.E.; Joshi, C.; Wang, S.; Decker, F.J.; Hogan, M.J.; Iverson, R.H.; O'Connell, C.; Raimondi, P.; Walz, D.; /SLAC

    2005-09-27

    3-D Particle-in-cell OSIRIS simulations of the current E-162 Plasma Wakefield Accelerator Experiment are presented in which a number of non-ideal conditions are modeled simultaneously. These include tilts on the beam in both planes, asymmetric beam emittance, beam energy spread and plasma inhomogeneities both longitudinally and transverse to the beam axis. The relative importance of the non-ideal conditions is discussed and a worst case estimate of the effect of these on energy gain is obtained. The simulation output is then propagated through the downstream optics, drift spaces and apertures leading to the experimental diagnostics to provide insight into the differences between actual beam conditions and what is measured. The work represents a milestone in the level of detail of simulation comparisons to plasma experiments.

  19. Additive manufacture (3d printing) of plasma diagnostic components and assemblies for fusion experiments

    NASA Astrophysics Data System (ADS)

    Sieck, Paul; Woodruff, Simon; Stuber, James; Romero-Talamas, Carlos; Rivera, William; You, Setthivoine; Card, Alexander

    2015-11-01

    Additive manufacturing (or 3D printing) is now becoming sufficiently accurate with a large range of materials for use in printing sensors needed universally in fusion energy research. Decreasing production cost and significantly lowering design time of energy subsystems would realize significant cost reduction for standard diagnostics commonly obtained through research grants. There is now a well-established set of plasma diagnostics, but these expensive since they are often highly complex and require customization, sometimes pace the project. Additive manufacturing (3D printing) is developing rapidly, including open source designs. Basic components can be printed for (in some cases) less than 1/100th costs of conventional manufacturing. We have examined the impact that AM can have on plasma diagnostic cost by taking 15 separate diagnostics through an engineering design using Conventional Manufacturing (CM) techniques to determine costs of components and labor costs associated with getting the diagnostic to work as intended. With that information in hand, we set about optimizing the design to exploit the benefits of AM. Work performed under DOE Contract DE-SC0011858.

  20. Atmospheric nonequilibrium mini-plasma jet created by a 3D printer

    SciTech Connect

    Takamatsu, Toshihiro; Kawano, Hiroaki; Miyahara, Hidekazu; Okino, Akitoshi; Azuma, Takeshi

    2015-07-15

    In this study, a small-sized plasma jet source with a 3.7 mm head diameter was created via a 3D printer. The jet’s emission properties and OH radical concentrations (generated by argon, helium, and nitrogen plasmas) were investigated using optical emission spectrometry (OES) and electron spin resonance (ESR). As such, for OES, each individual gas plasma propagates emission lines that derive from gases and ambient air inserted into the measurement system. For the case of ESR, a spin adduct of the OH radical is typically observed for all gas plasma treatment scenarios with a 10 s treatment by helium plasma generating the largest amount of OH radicals at 110 μM. Therefore, it was confirmed that a plasma jet source made by a 3D printer can generate stable plasmas using each of the aforementioned three gases.

  1. Electrohydrodynamic flow in a wire-plate non-thermal plasma reactor measured by 3D PIV method

    NASA Astrophysics Data System (ADS)

    Podlinski, J.; Niewulis, A.; Mizeraczyk, J.

    2009-08-01

    This work was aimed at measurements of the electrohydrodynamic (EHD) secondary flow in a non-thermal plasma reactor using three-dimensional particle image velocimetry (3D PIV) method. The wide-type non-thermal plasma reactor used in this work was an acrylic box with a wire discharge electrode and two plate collecting electrodes. The positive DC voltage was applied to the wire electrode through a 10 MΩ resistor. The collecting electrodes were grounded. The voltage applied to the wire electrode was 28 kV. Air flow seeded with a cigarette smoke was blown along the reactor duct with an average velocity of 0.6 m/s. The 3D PIV velocity fields measurements were carried out in four parallel planes stretched along the reactor duct, perpendicularly to the wire electrode and plate electrodes. The measured flow velocity fields illustrate complex nature of the EHD induced secondary flow in the non-thermal plasma reactor.

  2. 3D Printing of Conductive Complex Structures with In Situ Generation of Silver Nanoparticles.

    PubMed

    Fantino, Erika; Chiappone, Annalisa; Roppolo, Ignazio; Manfredi, Diego; Bongiovanni, Roberta; Pirri, Candido Fabrizio; Calignano, Flaviana

    2016-05-01

    Coupling the photoreduction of a metal precursor with 3D-printing technology is shown to allow the fabrication of conductive 3D hybrid structures consisting of metal nanoparticles and organic polymers shaped in complex multilayered architectures. 3D conductive structures are fabricated incorporating silver nitrate into a photocurable oligomer in the presence of suitable photoinitiators and exposing them to a digital light system. PMID:26992060

  3. Complex 3D crustal model of Asia region

    NASA Astrophysics Data System (ADS)

    Baranov, A. A.

    2009-04-01

    The Southern and Central Asia is tectonically complex region with great collision between Asian and Indian plates and its evolution is strongly related to the active subduction along the Pacific border. Previous global crustal model (CRUST 2.0.) for Asia region have resolution 2x2 degree. Model AsCRUST-08 (Baranov et al., 2008) of Central and Southern Asia with resolution of 1x1 degree was sufficiently improved in several regions and we built integrated model of the crust for Asia region. Also we add several regions in North Eurasia as Mongolia, Kazahstan and others. For such regions as Red and Dead sea, Northern China, Southern India we built regional maps with more detailed resolution. It was used data of deep seismic reflection, refraction and receiver functions studies from published papers. The existing data were verified and crosschecked. As the first result, we demonstrate a new Moho map for the region. The complex crustal model consists of three layers: upper, middle and lower crust. Besides depth to the boundaries, we provide average P-wave velocities in the upper, middle and lower parts of the crystalline crust. Limits for Vp velocities are: for upper crust 5.5-6.2 km/s, for middle 6.0-6.6 km/s, for lower crust 6.6-7.5km/s. Also we recalculated seismic P velocity data to density in crustal layers using rheology properties and geology data. Conclusions: Moho map and the velocity structure of the crust are much more heterogeneous than in previous maps CRUST 2.0. (Bassin et al., 2000), and CRUST 5.1. (Mooney et al., 1998). Our model offers a starting point for numerical modeling of deep structures by allowing correction for crustal effects beforehand and to resolve trade-off with mantle heterogeneities. This model will be used as a starting point in the gravity modeling of the lithosphere and mantle structure. [1] A. Baranov et al., First steps towards a new crustal model of South and Central Asia , Geophysical Research Abstracts, Vol. 10, EGU2008-A-05313

  4. Improvements to the ICRH antenna time-domain 3D plasma simulation model

    NASA Astrophysics Data System (ADS)

    Smithe, David N.; Jenkins, Thomas G.; King, J. R.

    2015-12-01

    We present a summary of ongoing improvements to the 3D time-domain plasma modeling software that has been used to look at ICRH antennas on Alcator C-Mod, NSTX, and ITER [1]. Our past investigations have shown that in low density cases where the slow wave is propagating, strong amplitude lower hybrid resonant fields can occur. Such a scenario could result in significant parasitic power loss in the SOL. The primary resonance broadening in this case is likely collisions with neutral gas, and thus we are upgrading the model to include realistic neutral gas in the SOL, in order to provide a better understanding of energy balance in these situations. Related to this, we are adding a temporal variation capability to the local plasma density in front of the antenna in order to investigate whether the near fields of the antenna could modify the local density sufficiently to initiate a low density situation. We will start with a simple scalar ponderomotive potential density expulsion model [2] for the density evolution, but are also looking to eventually couple to a more complex fluid treatment that would include tensor pressures and convective physics and sources of neutrals and ionization. We also review continued benchmarking efforts, and ongoing and planned improvements to the computational algorithms, resulting from experience gained during our recent supercomputing runs on the Titan supercomputer, including GPU operations.

  5. Deep inelastic scattering off a plasma with flavor from the D3-D7 brane model

    SciTech Connect

    Ballon Bayona, C. A.; Boschi-Filho, Henrique; Braga, Nelson R. F.

    2010-04-15

    We investigate the propagation of a spacelike flavor current in a strongly coupled N=2 super Yang-Mills plasma using the D3-D7 brane model at finite temperature. The partonic contribution to the plasma structure functions is obtained from the imaginary part of the retarded current-current commutator. At high temperatures we find a nonvanishing result, for a high energy current, indicating absorption of the flavor current by the quark constituents of the plasma. At low temperatures there is no quark contribution to the plasma structure functions.

  6. Afterglow Complex Plasma

    SciTech Connect

    Samarian, A. A.; Boufendi, L.; Mikikian, M.

    2008-09-07

    The review of the first detailed experimental and theoretical studies of complex plasma in RF discharge afterglow is presented. The studies have been done in a frame of FAST collaborative research project between Complex Plasma Laboratory of the University of Sydney and the GREMI laboratory of Universite d'Orleans. We examined the existing models of plasma decay, presents experimental observations of dust dynamics under different afterglow complex plasma conditions, presents the experimental data obtained (in particular the presence of positively charged particles in discharge afterglow), discusses the use of dust particles as a probe to study the diffusion losses in afterglow plasmas.

  7. 3D Printing: 3D Printing of Conductive Complex Structures with In Situ Generation of Silver Nanoparticles (Adv. Mater. 19/2016).

    PubMed

    Fantino, Erika; Chiappone, Annalisa; Roppolo, Ignazio; Manfredi, Diego; Bongiovanni, Roberta; Pirri, Candido Fabrizio; Calignano, Flaviana

    2016-05-01

    On page 3712, E. Fantino, A. Chiappone, and co-workers fabricate conductive 3D hybrid structures by coupling the photo-reduction of metal precursors with 3D printing technology. The generated structures consist of metal nanoparticles embedded in a polymer matrix shaped into complex multilayered architectures. 3D conductive structures are fabricated with a digital light-processing printer incorporating silver salt into photocurable formulations. PMID:27167030

  8. Mass Spectrometry of 3D-printed plastic parts under plasma and radiative heat environments

    NASA Astrophysics Data System (ADS)

    Rivera, W. F.; Romero-Talamas, C. A.; Bates, E. M.; Birmingham, W.; Takeno, J.; Knop, S.

    2015-11-01

    We present the design and preliminary results of a mass spectrometry system used to assess vacuum compatibility of 3D-printed parts, developed at the Dusty Plasma Laboratory of the University of Maryland Baltimore County (UMBC). A decrease in outgassing was observed when electroplated parts were inserted in the test chamber vs. non electroplated ones. Outgassing will also be tested under different environments such as plasma and radiative heat. Heat will be generated by a titanium getter pump placed inside a 90 degree elbow, such that titanium does not coat the part. A mirror inside the elbow will be used to throttle the heat arriving at the part. Plasma exposure of 3D printed parts will be achieved by placing the parts in a separate chamber connected to the spectrometer by a vacuum line that is differentially pumped. The signals from the mass spectrometer will be analyzed to see how the vacuum conditions fluctuate under different plasma discharges.

  9. A Software System for Filling Complex Holes in 3D Meshes by Flexible Interacting Particles

    NASA Astrophysics Data System (ADS)

    Yamazaki, Daisuke; Savchenko, Vladimir

    3D meshes generated by acquisition devices such as laser range scanners often contain holes due to occlusion, etc. In practice, these holes are extremely geometrically and topologically complex. We propose a heuristic hole filling technique using particle systems to fill complex holes with arbitrary topology in 3D meshes. Our approach includes the following steps: hole identification, base surface creation, particle distribution, triangulation, and mesh refinement. We demonstrate the functionality of the proposed surface retouching system on synthetic and real data.

  10. 3D dust clouds (Yukawa Balls) in strongly coupled dusty plasmas

    SciTech Connect

    Melzer, A.; Passvogel, M.; Miksch, T.; Ikkurthi, V. R.; Schneider, R.; Block, D.; Piel, A.

    2010-06-16

    Three-dimensional finite systems of charged dust particles confined to concentric spherical shells in a dusty plasma, so-called 'Yukawa balls', have been studied with respect to their static and dynamic properties. Here, we review the charging of particles in a dusty plasma discharge by computer simulations and the respective particle arrangements. The normal mode spectrum of Yukawa balls is measured from the 3D thermal Brownian motion of the dust particles around their equilibrium positions.

  11. 3D simulations of fluctuation spectra in the hall-MHD plasma.

    PubMed

    Shaikh, Dastgeer; Shukla, P K

    2009-01-30

    Turbulent spectral cascades are investigated by means of fully three-dimensional (3D) simulations of a compressible Hall-magnetohydrodynamic (H-MHD) plasma in order to understand the observed spectral break in the solar wind turbulence spectra in the regime where the characteristic length scales associated with electromagnetic fluctuations are smaller than the ion gyroradius. In this regime, the results of our 3D simulations exhibit that turbulent spectral cascades in the presence of a mean magnetic field follow an omnidirectional anisotropic inertial-range spectrum close to k(-7/3). The latter is associated with the Hall current arising from nonequal electron and ion fluid velocities in our 3D H-MHD plasma model. PMID:19257431

  12. Multi-scale self-organisation of edge plasma turbulent transport in 3D global simulations

    NASA Astrophysics Data System (ADS)

    Tamain, P.; Ghendrih, Ph; Bufferand, H.; Ciraolo, G.; Colin, C.; Fedorczak, N.; Nace, N.; Schwander, F.; Serre, E.

    2015-05-01

    The 3D global edge turbulence code TOKAM3X is used to study the properties of edge particle turbulent transport in circular limited plasmas, including both closed and open flux surfaces. Turbulence is driven by an incoming particle flux from the core plasma and no scale separation between the equilibrium and the fluctuations is assumed. Simulations show the existence of a complex self-organization of turbulence transport coupling scales ranging from a few Larmor radii up to the machine scale. Particle transport is largely dominated by small scale turbulence with fluctuations forming quasi field-aligned filaments. Radial particle transport is intermittent and associated with the propagation of coherent structures on long distances via avalanches. Long range correlations are also found in the poloidal and toroidal direction. The statistical properties of fluctuations vary with the radial and poloidal directions, with larger fluctuation levels and intermittency found in the outboard scrape-off layer (SOL). Radial turbulent transport is strongly ballooned, with 90% of the flux at the separatrix flowing through the low-field side. One of the main consequences is the existence of quasi-sonic asymmetric parallel flows driving a net rotation of the plasma. Simulations also show the spontaneous onset of an intermittent E × B rotation characterized by a larger shear at the separatrix. Strong correlation is found between the turbulent particle flux and the E × B flow shear in a phenomenology reminiscent of H-mode physics. The poloidal position of the limiter is a key player in the observed dynamics.

  13. Openwebglobe 2: Visualization of Complex 3D-GEODATA in the (mobile) Webbrowser

    NASA Astrophysics Data System (ADS)

    Christen, M.

    2016-06-01

    Providing worldwide high resolution data for virtual globes consists of compute and storage intense tasks for processing data. Furthermore, rendering complex 3D-Geodata, such as 3D-City models with an extremely high polygon count and a vast amount of textures at interactive framerates is still a very challenging task, especially on mobile devices. This paper presents an approach for processing, caching and serving massive geospatial data in a cloud-based environment for large scale, out-of-core, highly scalable 3D scene rendering on a web based virtual globe. Cloud computing is used for processing large amounts of geospatial data and also for providing 2D and 3D map data to a large amount of (mobile) web clients. In this paper the approach for processing, rendering and caching very large datasets in the currently developed virtual globe "OpenWebGlobe 2" is shown, which displays 3D-Geodata on nearly every device.

  14. Monocular 3D see-through head-mounted display via complex amplitude modulation.

    PubMed

    Gao, Qiankun; Liu, Juan; Han, Jian; Li, Xin

    2016-07-25

    The complex amplitude modulation (CAM) technique is applied to the design of the monocular three-dimensional see-through head-mounted display (3D-STHMD) for the first time. Two amplitude holograms are obtained by analytically dividing the wavefront of the 3D object to the real and the imaginary distributions, and then double amplitude-only spatial light modulators (A-SLMs) are employed to reconstruct the 3D images in real-time. Since the CAM technique can inherently present true 3D images to the human eye, the designed CAM-STHMD system avoids the accommodation-convergence conflict of the conventional stereoscopic see-through displays. The optical experiments further demonstrated that the proposed system has continuous and wide depth cues, which enables the observer free of eye fatigue problem. The dynamic display ability is also tested in the experiments and the results showed the possibility of true 3D interactive display. PMID:27464184

  15. Three-dimensional potential flows from functions of a 3D complex variable

    NASA Technical Reports Server (NTRS)

    Kelly, Patrick; Panton, Ronald L.; Martin, E. D.

    1990-01-01

    Potential, or ideal, flow velocities can be found from the gradient of an harmonic function. An ordinary complex valued analytic function can be written as the sum of two real valued functions, both of which are harmonic. Thus, 2D complex valued functions serve as a source of functions that describe two-dimensional potential flows. However, this use of complex variables has been limited to two-dimensions. Recently, a new system of three-dimensional complex variables has been developed at the NASA Ames Research Center. As a step toward application of this theory to the analysis of 3D potential flow, several functions of a three-dimensional complex variable have been investigated. The results for two such functions, the 3D exponential and 3D logarithm, are presented in this paper. Potential flows found from these functions are investigated. Important characteristics of these flows fields are noted.

  16. 3D Modeling of Laser Propagation in Ionizing Gas and Plasma

    NASA Astrophysics Data System (ADS)

    Cooley, J.; Antonsen, T., Jr.; Huang, C.; Mori, W.

    2003-10-01

    The interaction of a high intensity laser with ionizing gas and plasmas is of current interest for both Laser Wakefield Accelerators and x-ray generation. We have developed a 3D fluid simulation code based on the same quasistatic approximation used in the 2D code WAKE [1]. The object oriented structure of the code also allows it to couple to the quickPIC particle code [2]. We will present 3D studies of the ionization scattering instability [3], which occurs when a laser pulse propagates in an ionizing gas. [1] P. Mora and T. Antonsen, Jr., Phys. Plasmas 4(1), January 1997 [2] J. Cooley, T. Antonsen, Jr., C. Huang, etal., Proceedings, Advanced Accelerator Concepts, 2002 [3] Z. Bian and T. Antonsen, Jr., Phys. Plasmas 8(7), July 2001 * work supported by NSF and DOE

  17. New approach to the perception of 3D shape based on veridicality, complexity, symmetry and volume.

    PubMed

    Pizlo, Zygmunt; Sawada, Tadamasa; Li, Yunfeng; Kropatsch, Walter G; Steinman, Robert M

    2010-01-01

    This paper reviews recent progress towards understanding 3D shape perception made possible by appreciating the significant role that veridicality and complexity play in the natural visual environment. The ability to see objects as they really are "out there" is derived from the complexity inherent in the 3D object's shape. The importance of both veridicality and complexity was ignored in most prior research. Appreciating their importance made it possible to devise a computational model that recovers the 3D shape of an object from only one of its 2D images. This model uses a simplicity principle consisting of only four a priori constraints representing properties of 3D shapes, primarily their symmetry and volume. The model recovers 3D shapes from a single 2D image as well, and sometimes even better, than a human being. In the rare recoveries in which errors are observed, the errors made by the model and human subjects are very similar. The model makes no use of depth, surfaces or learning. Recent elaborations of this model include: (i) the recovery of the shapes of natural objects, including human and animal bodies with limbs in varying positions (ii) providing the model with two input images that allowed it to achieve virtually perfect shape constancy from almost all viewing directions. The review concludes with a comparison of some of the highlights of our novel, successful approach to the recovery of 3D shape from a 2D image with prior, less successful approaches. PMID:19800910

  18. Estimating the complexity of 3D structural models using machine learning methods

    NASA Astrophysics Data System (ADS)

    Mejía-Herrera, Pablo; Kakurina, Maria; Royer, Jean-Jacques

    2016-04-01

    Quantifying the complexity of 3D geological structural models can play a major role in natural resources exploration surveys, for predicting environmental hazards or for forecasting fossil resources. This paper proposes a structural complexity index which can be used to help in defining the degree of effort necessary to build a 3D model for a given degree of confidence, and also to identify locations where addition efforts are required to meet a given acceptable risk of uncertainty. In this work, it is considered that the structural complexity index can be estimated using machine learning methods on raw geo-data. More precisely, the metrics for measuring the complexity can be approximated as the difficulty degree associated to the prediction of the geological objects distribution calculated based on partial information on the actual structural distribution of materials. The proposed methodology is tested on a set of 3D synthetic structural models for which the degree of effort during their building is assessed using various parameters (such as number of faults, number of part in a surface object, number of borders, ...), the rank of geological elements contained in each model, and, finally, their level of deformation (folding and faulting). The results show how the estimated complexity in a 3D model can be approximated by the quantity of partial data necessaries to simulated at a given precision the actual 3D model without error using machine learning algorithms.

  19. The role of plasma response in divertor footprint modification by 3D fields in NSTX

    NASA Astrophysics Data System (ADS)

    Ahn, Joonwook; Kim, Kimin; Canal, Gustavo; Gan, Kaifu; Gray, Travis; McLean, Adam; Park, Jong-Kyu; Scotti, Filippo

    2015-11-01

    In NSTX, the divertor footprints of both heat and particle fluxes are found to be significantly modified by externally applied 3D magnetic perturbations. Striations on the divertor surface, indicating separatrix splitting and formation of magnetic lobes, are observed for both n = 1 and n = 3 perturbation fields. These striations can lead to localized heating of the divertor plates and to the re-attachment of detached plasmas, both of which have to be avoided in ITER for successful heat flux management. In this work, the role of plasma response on the formation of separatrix splitting has been investigated in the ideal framework by comparing measured heat and particle flux footprints with field line tracing calculations with and without contributions from the plasma response calculated by the ideal code IPEC. Simulations show that, n = 3 fields are slightly shielded by the plasma, with the measured helical pattern of striations in good agreement with the results from the vacuum approximation. The n = 1 fields are, however, significantly amplified by the plasma response, which provides a better agreement with the measurements. Resistive plasma response calculations by M3D-C1 are also in progress and the results will be compared with those from the ideal code IPEC. This work was supported by DoE Contracts: DE-AC05-00OR22725, DE-AC52-07NA27344 and DE-AC02-09CH11466.

  20. A Prototype Digital Library for 3D Collections: Tools To Capture, Model, Analyze, and Query Complex 3D Data.

    ERIC Educational Resources Information Center

    Rowe, Jeremy; Razdan, Anshuman

    The Partnership for Research in Spatial Modeling (PRISM) project at Arizona State University (ASU) developed modeling and analytic tools to respond to the limitations of two-dimensional (2D) data representations perceived by affiliated discipline scientists, and to take advantage of the enhanced capabilities of three-dimensional (3D) data that…

  1. Initiator-integrated 3D printing enables the formation of complex metallic architectures.

    PubMed

    Wang, Xiaolong; Guo, Qiuquan; Cai, Xiaobing; Zhou, Shaolin; Kobe, Brad; Yang, Jun

    2014-02-26

    Three-dimensional printing was used to fabricate various metallic structures by directly integrating a Br-containing vinyl-terminated initiator into the 3D resin followed by surface-initiated atomic-transfer radical polymerization (ATRP) and subsequent electroless plating. Cu- and Ni-coated complex structures, such as microlattices, hollow balls, and even Eiffel towers, were prepared. Moreover, the method is also capable of fabricating ultralight cellular metals with desired structures by simply etching the polymer template away. By combining the merits of 3D printing in structure design with those of ATRP in surface modification and polymer-assisted ELP of metals, this universal, robust, and cost-effective approach has largely extended the capability of 3D printing and will make 3D printing technology more practical in areas of electronics, acoustic absorption, thermal insulation, catalyst supports, and others. PMID:24328276

  2. 3D Mapping of plasma effective areas via detection of cancer cell damage induced by atmospheric pressure plasma jets

    NASA Astrophysics Data System (ADS)

    Han, Xu; Liu, Yueing; Stack, M. Sharon; Ptasinska, Sylwia

    2014-12-01

    In the present study, a nitrogen atmospheric pressure plasma jet (APPJ) was used for irradiation of oral cancer cells. Since cancer cells are very susceptible to plasma treatment, they can be used as a tool for detection of APPJ-effective areas, which extended much further than the visible part of the APPJ. An immunofluorescence assay was used for DNA damage identification, visualization and quantification. Thus, the effective damage area and damage level were determined and plotted as 3D images.

  3. TRAIL protein localization in human primary T cells by 3D microscopy using 3D interactive surface plot: a new method to visualize plasma membrane.

    PubMed

    Gras, Christophe; Smith, Nikaïa; Sengmanivong, Lucie; Gandini, Mariana; Kubelka, Claire Fernandes; Herbeuval, Jean-Philippe

    2013-01-31

    The apoptotic ligand TNF-related apoptosis ligand (TRAIL) is expressed on the membrane of immune cells during HIV infection. The intracellular stockade of TRAIL in human primary CD4(+) T cells is not known. Here we investigated whether primary CD4(+) T cells expressed TRAIL in their intracellular compartment and whether TRAIL is relocalized on the plasma membrane under HIV activation. We found that TRAIL protein was stocked in intracellular compartment in non activated CD4(+) T cells and that the total level of TRAIL protein was not increased under HIV-1 stimulation. However, TRAIL was massively relocalized on plasma membrane when cells were cultured with HIV. Using three dimensional (3D) microscopy we localized TRAIL protein in human T cells and developed a new method to visualize plasma membrane without the need of a membrane marker. This method used the 3D interactive surface plot and bright light acquired images. PMID:23085529

  4. Relativistic Laser Pulse Intensification with 3D Printed Micro-Tube Plasma Target

    NASA Astrophysics Data System (ADS)

    Ji, Liangliang; Snyder, Joseph; Pukhov, Alexander; Akli, Kramer

    2015-11-01

    The potential and applications of laser-plasma interactions (LPI) are restricted by the parameter space of existing lasers and targets. Advancing the laser intensity to the extreme regime is motivated by the production of energetic particle beams and by the quest to explore the exotic regimes of light-matter interaction. Target density and dimensions can always be varied to optimize the outcome. Here, we propose to create another degree of freedom in the parameter space of LPI using recent advances in 3D printing of materials. Fine structures at nm scale with high repetition and accuracy can nowadays be manufactured, allowing for a full precise control of the target. We demonstrate, via particle-in-cell (PIC) simulations, that 3D-printed micro-tube plasma (MTP) targets yield an intensity enhancement factor of 2-5. The novel MTP targets not only act as a plasma optical device to reach the 1023W/cm2 threshold based on today's intensities, but can also boost the generation of secondary particle and radiation sources. This work demonstrates that the combination of high contrast high power lasers and nano-3D printing techniques opens new paths in the intensity frontier and LPI micro-engineering.

  5. Implementation of the 3D edge plasma code EMC3-EIRENE on NSTX

    SciTech Connect

    Lore, J. D.; Canik, J. M.; Feng, Y.; Ahn, J. -W.; Maingi, R.; Soukhanovskii, V.

    2012-05-09

    The 3D edge transport code EMC3-EIRENE has been applied for the first time to the NSTX spherical tokamak. A new disconnected double null grid has been developed to allow the simulation of plasma where the radial separation of the inner and outer separatrix is less than characteristic widths (e.g. heat flux width) at the midplane. Modelling results are presented for both an axisymmetric case and a case where 3D magnetic field is applied in an n = 3 configuration. In the vacuum approximation, the perturbed field consists of a wide region of destroyed flux surfaces and helical lobes which are a mixture of long and short connection length field lines formed by the separatrix manifolds. This structure is reflected in coupled 3D plasma fluid (EMC3) and kinetic neutral particle (EIRENE) simulations. The helical lobes extending inside of the unperturbed separatrix are filled in by hot plasma from the core. The intersection of the lobes with the divertor results in a striated flux footprint pattern on the target plates. As a result, profiles of divertor heat and particle fluxes are compared with experimental data, and possible sources of discrepancy are discussed.

  6. Implementation of the 3D edge plasma code EMC3-EIRENE on NSTX

    DOE PAGESBeta

    Lore, J. D.; Canik, J. M.; Feng, Y.; Ahn, J. -W.; Maingi, R.; Soukhanovskii, V.

    2012-05-09

    The 3D edge transport code EMC3-EIRENE has been applied for the first time to the NSTX spherical tokamak. A new disconnected double null grid has been developed to allow the simulation of plasma where the radial separation of the inner and outer separatrix is less than characteristic widths (e.g. heat flux width) at the midplane. Modelling results are presented for both an axisymmetric case and a case where 3D magnetic field is applied in an n = 3 configuration. In the vacuum approximation, the perturbed field consists of a wide region of destroyed flux surfaces and helical lobes which aremore » a mixture of long and short connection length field lines formed by the separatrix manifolds. This structure is reflected in coupled 3D plasma fluid (EMC3) and kinetic neutral particle (EIRENE) simulations. The helical lobes extending inside of the unperturbed separatrix are filled in by hot plasma from the core. The intersection of the lobes with the divertor results in a striated flux footprint pattern on the target plates. As a result, profiles of divertor heat and particle fluxes are compared with experimental data, and possible sources of discrepancy are discussed.« less

  7. Intracellular ROS mediates gas plasma-facilitated cellular transfection in 2D and 3D cultures

    PubMed Central

    Xu, Dehui; Wang, Biqing; Xu, Yujing; Chen, Zeyu; Cui, Qinjie; Yang, Yanjie; Chen, Hailan; Kong, Michael G.

    2016-01-01

    This study reports the potential of cold atmospheric plasma (CAP) as a versatile tool for delivering oligonucleotides into mammalian cells. Compared to lipofection and electroporation methods, plasma transfection showed a better uptake efficiency and less cell death in the transfection of oligonucleotides. We demonstrated that the level of extracellular aqueous reactive oxygen species (ROS) produced by gas plasma is correlated with the uptake efficiency and that this is achieved through an increase of intracellular ROS levels and the resulting increase in cell membrane permeability. This finding was supported by the use of ROS scavengers, which reduced CAP-based uptake efficiency. In addition, we found that cold atmospheric plasma could transfer oligonucleotides such as siRNA and miRNA into cells even in 3D cultures, thus suggesting the potential for unique applications of CAP beyond those provided by standard transfection techniques. Together, our results suggest that cold plasma might provide an efficient technique for the delivery of siRNA and miRNA in 2D and 3D culture models. PMID:27296089

  8. Intracellular ROS mediates gas plasma-facilitated cellular transfection in 2D and 3D cultures.

    PubMed

    Xu, Dehui; Wang, Biqing; Xu, Yujing; Chen, Zeyu; Cui, Qinjie; Yang, Yanjie; Chen, Hailan; Kong, Michael G

    2016-01-01

    This study reports the potential of cold atmospheric plasma (CAP) as a versatile tool for delivering oligonucleotides into mammalian cells. Compared to lipofection and electroporation methods, plasma transfection showed a better uptake efficiency and less cell death in the transfection of oligonucleotides. We demonstrated that the level of extracellular aqueous reactive oxygen species (ROS) produced by gas plasma is correlated with the uptake efficiency and that this is achieved through an increase of intracellular ROS levels and the resulting increase in cell membrane permeability. This finding was supported by the use of ROS scavengers, which reduced CAP-based uptake efficiency. In addition, we found that cold atmospheric plasma could transfer oligonucleotides such as siRNA and miRNA into cells even in 3D cultures, thus suggesting the potential for unique applications of CAP beyond those provided by standard transfection techniques. Together, our results suggest that cold plasma might provide an efficient technique for the delivery of siRNA and miRNA in 2D and 3D culture models. PMID:27296089

  9. The development of laser-plasma interaction program LAP3D on thousands of processors

    NASA Astrophysics Data System (ADS)

    Hu, Xiaoyan; Hao, Liang; Liu, Zhanjun; Zheng, Chunyang; Li, Bin; Guo, Hong

    2015-08-01

    Modeling laser-plasma interaction (LPI) processes in real-size experiments scale is recognized as a challenging task. For explorering the influence of various instabilities in LPI processes, a three-dimensional laser and plasma code (LAP3D) has been developed, which includes filamentation, stimulated Brillouin backscattering (SBS), stimulated Raman backscattering (SRS), non-local heat transport and plasmas flow computation modules. In this program, a second-order upwind scheme is applied to solve the plasma equations which are represented by an Euler fluid model. Operator splitting method is used for solving the equations of the light wave propagation, where the Fast Fourier translation (FFT) is applied to compute the diffraction operator and the coordinate translations is used to solve the acoustic wave equation. The coupled terms of the different physics processes are computed by the second-order interpolations algorithm. In order to simulate the LPI processes in massively parallel computers well, several parallel techniques are used, such as the coupled parallel algorithm of FFT and fluid numerical computation, the load balance algorithm, and the data transfer algorithm. Now the phenomena of filamentation, SBS and SRS have been studied in low-density plasma successfully with LAP3D. Scalability of the program is demonstrated with a parallel efficiency above 50% on about ten thousand of processors.

  10. The development of laser-plasma interaction program LAP3D on thousands of processors

    SciTech Connect

    Hu, Xiaoyan Hao, Liang; Liu, Zhanjun; Zheng, Chunyang; Li, Bin Guo, Hong

    2015-08-15

    Modeling laser-plasma interaction (LPI) processes in real-size experiments scale is recognized as a challenging task. For explorering the influence of various instabilities in LPI processes, a three-dimensional laser and plasma code (LAP3D) has been developed, which includes filamentation, stimulated Brillouin backscattering (SBS), stimulated Raman backscattering (SRS), non-local heat transport and plasmas flow computation modules. In this program, a second-order upwind scheme is applied to solve the plasma equations which are represented by an Euler fluid model. Operator splitting method is used for solving the equations of the light wave propagation, where the Fast Fourier translation (FFT) is applied to compute the diffraction operator and the coordinate translations is used to solve the acoustic wave equation. The coupled terms of the different physics processes are computed by the second-order interpolations algorithm. In order to simulate the LPI processes in massively parallel computers well, several parallel techniques are used, such as the coupled parallel algorithm of FFT and fluid numerical computation, the load balance algorithm, and the data transfer algorithm. Now the phenomena of filamentation, SBS and SRS have been studied in low-density plasma successfully with LAP3D. Scalability of the program is demonstrated with a parallel efficiency above 50% on about ten thousand of processors.

  11. Poloidal structure of the plasma edge with 3D magnetic fields

    NASA Astrophysics Data System (ADS)

    Agostini, Matteo; Scarin, Paolo; Carraro, Lorella; Spizzo, Gianluca; Spolaore, Monica; Vianello, Nicola

    2015-11-01

    In the RFX-mod reversed-field pinch, when the magnetic field spontaneously develops a non axi-symmetric structure, also the plasma edge assumes a three dimensional shape. In previous RFX works, it has been shown that kinetic properties of the plasma (electron pressure, connection lengths, floating potential, influx, plasma flow) closely follow the symmetry of the 3D field, both in amplitude and phase, along the toroidal angle (i.e, the RFP perpendicular direction in the edge). Using a set of poloidally distributed diagnostics, it is shown that these same properties follow the poloidal periodicity (m =1) of the field. However, the behavior of the phase is more difficult to understand. In particular, the 3D modulation of the plasma potential can rotate in the poloidal direction with the typical velocity of 100m/s, similar in value with the phase velocity of the m =1 magnetic mode; or it can jump between inboard and outboard equatorial midplane. Moreover, when the floating potential structure rotates, there are preliminary indications that its direction depends on the plasma density: it follows the m =1 mode at higher density, and rotates in the opposite direction at lower density.

  12. Multimode observations and 3D magnetic control of the boundary of a tokamak plasma

    NASA Astrophysics Data System (ADS)

    Levesque, J. P.; Rath, N.; Shiraki, D.; Angelini, S.; Bialek, J.; Byrne, P. J.; DeBono, B. A.; Hughes, P. E.; Mauel, M. E.; Navratil, G. A.; Peng, Q.; Rhodes, D. J.; Stoafer, C. C.

    2013-07-01

    We present high-resolution detection and control of the 3D magnetic boundary in the High Beta Tokamak-Extended Pulse (HBT-EP) device. Measurements of non-axisymmetric radial and poloidal fields are made using 216 magnetic sensors positioned near the plasma surface. Control of 3D fields is accomplished using 40 independent saddle coils attached to the passive stabilizing wall. The control coils are energized with high-power solid-state amplifiers, and massively parallel, high-throughput feedback control experiments are performed using low-latency connections between PCI Express analogue input and output modules and a graphics processing unit. The time evolution of unstable and saturated wall-stabilized external kink modes are studied with and without applying magnetic perturbations using the control coils. The 3D dynamic structure of the magnetic field surrounding the plasma is determined through biorthogonal decomposition using the full set of magnetic sensors without the need to fit either a Fourier or a model-based basis. Naturally occurring external kinks are composed of multiple independent helical modes. Smooth transitions between dominant poloidal mode numbers are observed for simultaneous n = 1 and n = 2 modes as the edge safety factor changes. Relative amplitudes of coexistent m/n = 3/1 and 6/2 modes depend on the plasma's major radius and edge safety factor. When stationary 3/1 magnetic perturbations are applied, the resonant response can be linear, saturated, or disruptive, depending upon the perturbation amplitude and the edge safety factor; increased plasma-wall interactions from the perturbed plasma are proposed as a saturation mechanism. Initial feedback experiments have used 40 sensors and 40 control coils, producing mode amplification or suppression, and acceleration or deceleration depending on the feedback phase angle.

  13. 3-D FDTD simulation of shear waves for evaluation of complex modulus imaging.

    PubMed

    Orescanin, Marko; Wang, Yue; Insana, Michael

    2011-02-01

    The Navier equation describing shear wave propagation in 3-D viscoelastic media is solved numerically with a finite differences time domain (FDTD) method. Solutions are formed in terms of transverse scatterer velocity waves and then verified via comparison to measured wave fields in heterogeneous hydrogel phantoms. The numerical algorithm is used as a tool to study the effects on complex shear modulus estimation from wave propagation in heterogeneous viscoelastic media. We used an algebraic Helmholtz inversion (AHI) technique to solve for the complex shear modulus from simulated and experimental velocity data acquired in 2-D and 3-D. Although 3-D velocity estimates are required in general, there are object geometries for which 2-D inversions provide accurate estimations of the material properties. Through simulations and experiments, we explored artifacts generated in elastic and dynamic-viscous shear modulus images related to the shear wavelength and average viscosity. PMID:21342824

  14. Template for 3D Printing a Low-Temperature Plasma Probe.

    PubMed

    Martínez-Jarquín, Sandra; Moreno-Pedraza, Abigail; Guillén-Alonso, Héctor; Winkler, Robert

    2016-07-19

    Low-temperature plasma (LTP) ionization represents an emerging technology in ambient mass spectrometry. LTP enables the solvent-free direct detection of a broad range of molecules and mass spectrometry imaging (MSI). The low energy consumption and modest technical requirements of these ion sources favors their employment in mobile applications and as a means to upgrade existing mass analyzers. However, the broad adoption of LTP is hindered by the lack of commercial devices, and constructing personal devices is tricky. Improper setup can result in equipment malfunction or may cause serious damage to instruments due to strong electromagnetic fields or arcing. With this in mind, we developed a reproducible LTP probe, which is designed exclusively from commercial and 3D printed components. The plasma jet generated by the device has a diameter of about 200 μm, which is satisfactory for the ambient imaging of macroscopic samples. We coupled the 3D-LTP probe to an ion trap analyzer and demonstrated the functionality of the ion source by detecting organic and chemical compounds from pure reference standards, biological substances, and pharmaceutical samples. Molecules were primarily detected in their protonated form or as water/ammonium adducts. The identification of compounds was possible by standard collision-induced dissociation (CID) fragmentation spectra. The files necessary to reproduce the 3D parts are available from the project page ( http://lababi.bioprocess.org/index.php/3d-ltp ) under a dual license model, which permits reproduction of the probe and further community-driven development for noncommercial use ("peer production"). Our reproducible probe design thus contributes to a facilitated adaption and evolution of low-temperature plasma technologies in analytical chemistry. PMID:27302654

  15. 2D and 3D Method of Characteristic Tools for Complex Nozzle Development

    NASA Technical Reports Server (NTRS)

    Rice, Tharen

    2003-01-01

    This report details the development of a 2D and 3D Method of Characteristic (MOC) tool for the design of complex nozzle geometries. These tools are GUI driven and can be run on most Windows-based platforms. The report provides a user's manual for these tools as well as explains the mathematical algorithms used in the MOC solutions.

  16. A 3-D Theoretical Model for Calculating Plasma Effects in Germanium Detectors

    NASA Astrophysics Data System (ADS)

    Wei, Wenzhao; Liu, Jing; Mei, Dongming; Cubed Collaboration

    2015-04-01

    In the detection of WIMP-induced nuclear recoil with Ge detectors, the main background source is the electron recoil produced by natural radioactivity. The capability of discriminating nuclear recoil (n) from electron recoil (γ) is crucial to WIMP searches. Digital pulse shape analysis is an encouraging approach to the discrimination of nuclear recoil from electron recoil since nucleus is much heavier than electron and heavier particle generates ionization more densely along its path, which forms a plasma-like cloud of charge that shields the interior from the influence of the electric field. The time needed for total disintegration of this plasma region is called plasma time. The plasma time depends on the initial density and radius of the plasma-like cloud, diffusion constant for charge carriers, and the strength of electric field. In this work, we developed a 3-D theoretical model for calculating the plasma time in Ge detectors. Using this model, we calculated the plasma time for both nuclear recoils and electron recoils to study the possibility for Ge detectors to realize n/ γ discrimination and improve detector sensitivity in detecting low-mass WIMPs. This work is supported by NSF in part by the NSF PHY-0758120, DOE Grant DE-FG02-10ER46709, and the State of South Dakota.

  17. Multiscale Processes Energizing Plasmas during Reconnection: 3D Simulations in preparation for the MMS mission

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Goldman, Martin; Newman, David

    2015-11-01

    Magnetic reconnection is a mechanism to convert magnetic energy to particle energy in the form of heat and directed flows. We study here where reconnection and particle energization are found in full 3D models of a reconnecting plasma sheet. Three regions emerge as the primary loci of energy conversion: the separatrices, the dipolarization fronts and the electron diffusion region near x-points. We consider two scenarios: one where the exhaust from multiple x-lines forms a plasmoid (a flux rope in 3D) and one where the exhaust encounters pristine unreconnected plasma and forms a pile-up front. A key process intrinsically 3D, not present in 2D, is the development of an instability in the outflow leading to the formation of secondary reconnection sites that further enhance energy conversion. The MMS mission of NASA was launched on March 12 of this year with the stated goal of finding these regions. We will soon know if we are right in predicting these additional regions of dissipation in the reconnection outflow. Work supported by the NASA MMS Program and by the BOF funds of the KU Leuven. Simulations conducted on NASA Computing facilities, PRACE Tier-0 computing and at NERSC (DOE Office of Science User Contract No. DE-AC02-05CH11231).

  18. 3D reconstruction of complex geological bodies: Examples from the Alps

    NASA Astrophysics Data System (ADS)

    Zanchi, Andrea; Francesca, Salvi; Stefano, Zanchetta; Simone, Sterlacchini; Graziano, Guerra

    2009-01-01

    Cartographic geological and structural data collected in the field and managed by Geographic Information Systems (GIS) technology can be used for 3D reconstruction of complex geological bodies. Using a link between GIS tools and gOcad, stratigraphic and tectonic surfaces can be reconstructed taking into account any geometrical constraint derived from field observations. Complex surfaces can be reconstructed using large data sets analysed by suitable geometrical techniques. Three main typologies of geometric features and related attributes are exported from a GIS-geodatabase: (1) topographic data as points from a digital elevation model; (2) stratigraphic and tectonic boundaries, and linear features as 2D polylines; (3) structural data as points. After having imported the available information into gOcad, the following steps should be performed: (1) construction of the topographic surface by interpolation of points; (2) 3D mapping of the linear geological boundaries and linear features by vertical projection on the reconstructed topographic surface; (3) definition of geometrical constraints from planar and linear outcrop data; (4) construction of a network of cross-sections based on field observations and geometrical constraints; (5) creation of 3D surfaces, closed volumes and grids from the constructed objects. Three examples of the reconstruction of complex geological bodies from the Italian Alps are presented here. The methodology demonstrates that although only outcrop data were available, 3D modelling has allows the checking of the geometrical consistency of the interpretative 2D sections and of the field geology, through a 3D visualisation of geometrical models. Application of a 3D geometrical model to the case studies can be very useful in geomechanical modelling for slope-stability or resource evaluation.

  19. Plasma Biomarker Discovery Using 3D Protein Profiling Coupled with Label-Free Quantitation

    PubMed Central

    Beer, Lynn A.; Tang, Hsin-Yao; Barnhart, Kurt T.; Speicher, David W.

    2011-01-01

    In-depth quantitative profiling of human plasma samples for biomarker discovery remains quite challenging. One promising alternative to chemical derivatization with stable isotope labels for quantitative comparisons is direct, label-free, quantitative comparison of raw LC–MS data. But, in order to achieve high-sensitivity detection of low-abundance proteins, plasma proteins must be extensively pre-fractionated, and results from LC–MS runs of all fractions must be integrated efficiently in order to avoid misidentification of variations in fractionation from sample to sample as “apparent” biomarkers. This protocol describes a powerful 3D protein profiling method for comprehensive analysis of human serum or plasma proteomes, which combines abundant protein depletion and high-sensitivity GeLC–MS/MS with label-free quantitation of candidate biomarkers. PMID:21468938

  20. GIANT: pattern analysis of molecular interactions in 3D structures of protein–small ligand complexes

    PubMed Central

    2014-01-01

    Background Interpretation of binding modes of protein–small ligand complexes from 3D structure data is essential for understanding selective ligand recognition by proteins. It is often performed by visual inspection and sometimes largely depends on a priori knowledge about typical interactions such as hydrogen bonds and π-π stacking. Because it can introduce some biases due to scientists’ subjective perspectives, more objective viewpoints considering a wide range of interactions are required. Description In this paper, we present a web server for analyzing protein–small ligand interactions on the basis of patterns of atomic contacts, or “interaction patterns” obtained from the statistical analyses of 3D structures of protein–ligand complexes in our previous study. This server can guide visual inspection by providing information about interaction patterns for each atomic contact in 3D structures. Users can visually investigate what atomic contacts in user-specified 3D structures of protein–small ligand complexes are statistically overrepresented. This server consists of two main components: “Complex Analyzer”, and “Pattern Viewer”. The former provides a 3D structure viewer with annotations of interacting amino acid residues, ligand atoms, and interacting pairs of these. In the annotations of interacting pairs, assignment to an interaction pattern of each contact and statistical preferences of the patterns are presented. The “Pattern Viewer” provides details of each interaction pattern. Users can see visual representations of probability density functions of interactions, and a list of protein–ligand complexes showing similar interactions. Conclusions Users can interactively analyze protein–small ligand binding modes with statistically determined interaction patterns rather than relying on a priori knowledge of the users, by using our new web server named GIANT that is freely available at http://giant.hgc.jp/. PMID:24423161

  1. Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3D

    PubMed Central

    Porollo, Aleksey; Meller, Jaroslaw

    2007-01-01

    Background Macromolecular visualization as well as automated structural and functional annotation tools play an increasingly important role in the post-genomic era, contributing significantly towards the understanding of molecular systems and processes. For example, three dimensional (3D) models help in exploring protein active sites and functional hot spots that can be targeted in drug design. Automated annotation and visualization pipelines can also reveal other functionally important attributes of macromolecules. These goals are dependent on the availability of advanced tools that integrate better the existing databases, annotation servers and other resources with state-of-the-art rendering programs. Results We present a new tool for protein structure analysis, with the focus on annotation and visualization of protein complexes, which is an extension of our previously developed POLYVIEW web server. By integrating the web technology with state-of-the-art software for macromolecular visualization, such as the PyMol program, POLYVIEW-3D enables combining versatile structural and functional annotations with a simple web-based interface for creating publication quality structure rendering, as well as animated images for Powerpoint™, web sites and other electronic resources. The service is platform independent and no plug-ins are required. Several examples of how POLYVIEW-3D can be used for structural and functional analysis in the context of protein-protein interactions are presented to illustrate the available annotation options. Conclusion POLYVIEW-3D server features the PyMol image rendering that provides detailed and high quality presentation of macromolecular structures, with an easy to use web-based interface. POLYVIEW-3D also provides a wide array of options for automated structural and functional analysis of proteins and their complexes. Thus, the POLYVIEW-3D server may become an important resource for researches and educators in the fields of protein

  2. Navier-Stokes Neutral and Plasma Fluid Modelling in 3D

    SciTech Connect

    Riemann, J; Borchardt, M; Schneider, R; Mutzke, A; Rognlien, T; Umansky, M

    2004-05-17

    The 3D finite volume transport code BoRiS is applied to a system of coupled plasma and neutral fluid equations in a slab. Demonstrating easy implementation of new equations, a new parallel BoRiS version is tested on three different models for the neutral fluid - diffusive, parallel Navier-Stokes and full Navier-Stokes - and the results are compared to each other. Typical effects like density enhancement by ionization of recycled neutrals in front of a target plate can be seen and differences are linked to the neutral models in use.

  3. Microfabrication of complex porous tissue engineering scaffolds using 3D projection stereolithography

    PubMed Central

    Gauvin, Robert; Chen, Ying-Chieh; Lee, Jin Woo; Soman, Pranav; Zorlutuna, Pinar; Nichol, Jason W.; Bae, Hojae; Chen, Shaochen; Khademhosseini, Ali

    2013-01-01

    The success of tissue engineering will rely on the ability to generate complex, cell seeded three-dimensional (3D) structures. Therefore, methods that can be used to precisely engineer the architecture and topography of scaffolding materials will represent a critical aspect of functional tissue engineering. Previous approaches for 3D scaffold fabrication based on top-down and process driven methods are often not adequate to produce complex structures due to the lack of control on scaffold architecture, porosity, and cellular interactions. The proposed projection stereolithography (PSL) platform can be used to design intricate 3D tissue scaffolds that can be engineered to mimic the microarchitecture of tissues, based on computer aided design (CAD). The PSL system was developed, programmed and optimized to fabricate 3D scaffolds using gelatin methacrylate (GelMA). Variation of the structure and prepolymer concentration enabled tailoring the mechanical properties of the scaffolds. A dynamic cell seeding method was utilized to improve the coverage of the scaffold throughout its thickness. The results demonstrated that the interconnectivity of pores allowed for uniform human umbilical vein endothelial cells (HUVECs) distribution and proliferation in the scaffolds, leading to high cell density and confluency at the end of the culture period. Moreover, immunohistochemistry results showed that cells seeded on the scaffold maintained their endothelial phenotype, demonstrating the biological functionality of the microfabricated GelMA scaffolds. PMID:22365811

  4. Microfabrication of complex porous tissue engineering scaffolds using 3D projection stereolithography.

    PubMed

    Gauvin, Robert; Chen, Ying-Chieh; Lee, Jin Woo; Soman, Pranav; Zorlutuna, Pinar; Nichol, Jason W; Bae, Hojae; Chen, Shaochen; Khademhosseini, Ali

    2012-05-01

    The success of tissue engineering will rely on the ability to generate complex, cell seeded three-dimensional (3D) structures. Therefore, methods that can be used to precisely engineer the architecture and topography of scaffolding materials will represent a critical aspect of functional tissue engineering. Previous approaches for 3D scaffold fabrication based on top-down and process driven methods are often not adequate to produce complex structures due to the lack of control on scaffold architecture, porosity, and cellular interactions. The proposed projection stereolithography (PSL) platform can be used to design intricate 3D tissue scaffolds that can be engineered to mimic the microarchitecture of tissues, based on computer aided design (CAD). The PSL system was developed, programmed and optimized to fabricate 3D scaffolds using gelatin methacrylate (GelMA). Variation of the structure and prepolymer concentration enabled tailoring the mechanical properties of the scaffolds. A dynamic cell seeding method was utilized to improve the coverage of the scaffold throughout its thickness. The results demonstrated that the interconnectivity of pores allowed for uniform human umbilical vein endothelial cells (HUVECs) distribution and proliferation in the scaffolds, leading to high cell density and confluency at the end of the culture period. Moreover, immunohistochemistry results showed that cells seeded on the scaffold maintained their endothelial phenotype, demonstrating the biological functionality of the microfabricated GelMA scaffolds. PMID:22365811

  5. 3D Global Braginskii Simulations of Plasma Dynamics and Turbulence in LAPD

    NASA Astrophysics Data System (ADS)

    Fisher, Dustin; Rogers, Barrett

    2013-10-01

    3D global two-fluid simulations are presented in an ongoing effort to identify and understand the plasma dynamics in the Large Plasma Device (LAPD) at UCLA's Basic Science Facility. Modeling is done using a modified version of the Global Braginskii Solver (GBS) that models the plasma from source to edge region on a field-aligned grid using a finite difference method and 4th order Runge-Kutta time stepping. Progress has been made to account for the thermionic cathode emission of fast electrons at the source, the axial dependence of the plasma source, and biasing the front and side walls. Along with trying to understand the effect sheath's and neutrals have in setting the plasma potential, work is being done to model the biasable limiter recently used by colleagues at UCLA to better understand flow shear and particle transport in the LAPD. Comparisons of the zero bias case are presented along with analysis of the growth and dynamics of turbulent structures (such as drift waves) seen in the simulations. Supported through CICART under the auspices of the DOE's EPSCoR Grant No. DE-FG02-10ER46372.

  6. 3D Plasma Clusters: Analysis of dynamical evolution and individual particle interaction

    SciTech Connect

    Antonova, T.; Thomas, H. M.; Morfill, G. E.; Annaratone, B. M.

    2008-09-07

    3D plasma clusters (up to 100 particles) have been built inside small (32 mm{sup 3}) plasma volume in gravity. It has been estimated that the external confinement has a negligible influence on the processes inside the clusters. At such conditions the analysis of dynamical evolution and individual particle interactions have shown that the binary interaction among particles in addition to the repelling Coulomb force exhibits also an attractive part. The tendency of the systems to approach the state with minimum energy by rearranging particles inside has been detected. The measured 63 particles' cluster vibrations are in close agreement with vibrations of a drop with surface tension. This indicates that even a 63 particle cluster already exhibits properties normally associated with the cooperative regime.

  7. Geological characterisation of complex reservoirs using 3D seismic: Case studies

    NASA Astrophysics Data System (ADS)

    Benaissa, Zahia; Benaïssa, Abdelkader; Seghir Baghaoui, Mohamed; Bendali, Mohamed; Chami, Adel; Khelifi Touhami, Médina; Ouadfeul, Sid Ali; Boudella, Amar

    2014-05-01

    3D seismic allows getting a set of numerous closely-spaced seismic lines that provide a high spatially sampled measure of subsurface reflectivity. It leads to an accurate interpretation of seismic reflection data, which is one of the most important stages of a successful hydrocarbons exploration, especially in the reservoirs characterised by complex geological setting. We present here two case studies pertaining to two Algerian hydrocarbon fields. Considering the positive results obtained from 2D seismic interpretation, several wells were drilled. Some of them have proved dry, due certainly to inaccurate seismic interpretation because of non standard geological context. For the first case, the high quality of the 3D seismic data allowed to reveal, on all the inlines and crosslines, the existence of paleovalleys under the top of the Ordovician (unit IV) reservoir. The mapping of these paleovalleys clearly showed that the dry well, contrary to the other wells, was implanted outside paleovalleys. This fact was confirmed by the analysis of well data. The second case study concerns the problem of andesitic eruptive deposits on the top of the Ordovician reservoir, which condition the geometry and continuity of this reservoir and cause uncertainties in the mapping of the Hercynian unconformity. Well data associated with 3D seismic response shows that eruptive deposits generate high impedance anomaly because of the high density and velocity of andesites. We used this information to interpret these eruptive rocks as being responsible of high impedance anomalies, inside the Ordovician reservoir, on the impedance volume generated from the 3D seismic data. A 3D extraction of the anomalies allowed an accurate localisation of the andesites. So, it appears, according to these two case studies, that for an efficient recovery of hydrocarbons, we have to rely, first of all, on an accurate seismic interpretation before we use microscopic measurements. 3D seismic, once again, remains

  8. Mixed-Mode Fracture and Fatigue Analysis of Cracked 3D Complex Structures using a 3D SGBEM-FEM Alternating Method

    NASA Astrophysics Data System (ADS)

    Bhavanam, Sharada

    The aim of this thesis is to numerically evaluate the mixed-mode Stress Intensity Factors (SIFs) of complex 3D structural geometries with arbitrary 3D cracks using the Symmetric Galerkin Boundary Element Method-Finite Element Method (SGBEM-FEM) Alternating Method. Various structural geometries with different loading scenarios and crack configurations were examined in this thesis to understand the behavior and trends of the mixed-mode SIFs as well as the fatigue life for these complex structural geometries. Although some 3D structures have empirical and numerical solutions that are readily available in the open literature, some do not; therefore this thesis presents the results of fracture and fatigue analyses of these 3D complex structures using the SGBEM-FEM Alternating Method to serve as reference for future studies. Furthermore, there are advantages of using the SGBEM-FEM Alternating Method compared to traditional FEM methods. For example, the fatigue-crack-growth and fatigue life can be better estimated for a structure because different fatigue models (i.e. Walker, Paris, and NASGRO) can be used within the same framework of the SGBEM-FEM Alternating Method. The FEM (un-cracked structure)/BEM(crack model) meshes are modeled independently, which speeds up the computation process and reduces the cost of human labor. A simple coarse mesh can be used for all fracture and fatigue analyses of complex structures. In this thesis, simple coarse meshes were used for 3D complex structures, which were below 5000 elements as compared to traditional FEM, which require meshes where the elements range on the order of ˜250,000 to ˜106 and sometimes even more than that.

  9. The plasma interaction of Enceladus: 3D hybrid simulations and comparison with Cassini MAG data

    NASA Astrophysics Data System (ADS)

    Kriegel, H.; Simon, S.; Müller, J.; Motschmann, U.; Saur, J.; Glassmeier, K.-H.; Dougherty, M. K.

    2009-12-01

    We study the interaction of Saturn's small, icy moon Enceladus and its plume with the corotating magnetospheric plasma by means of a 3D hybrid simulation model, which treats the ions as individual particles and the electrons as a massless, charge-neutralizing fluid. We analyze systematically how Enceladus' internal conductivity and plasma absorption at the surface as well as charge exchange and pick-up in the plume contribute to the overall structure of the interaction region. Furthermore, we provide a comparison of our simulation results to data obtained by the Cassini magnetometer instrument. The major findings of this study are: (1) the magnetic field diffuses through the solid body of Enceladus almost unaffected, whereas plasma absorption gives rise to a symmetric depletion wake downstream of the moon; (2) due to the small gyroradii of the newly generated plume ions, the pick-up tail possesses a 2D structure; (3) the magnetic field lines drape around the plume, which triggers an Alfvén wing system that dominates the structure of Enceladus' plasma environment. Inside the plume itself, a magnetic cavity is formed; (4) besides the reproduction of the key features of the observed magnetic field signatures, evidence for variability in the locations of the active jets and in the total gas content of the plume are shown.

  10. Kinematic interpretation of the 3D shapes of metamorphic core complexes

    NASA Astrophysics Data System (ADS)

    Le Pourhiet, Laetitia; Huet, Benjamin; May, Dave A.; Labrousse, Loic; Jolivet, Laurent

    2012-09-01

    Metamorphic Core Complexes form dome shaped structures in which the ductile crust is exhumed beneath a detachment fault. The 3D dome geometry, inferred by mapping the schistosity in the exhumed crust, can be either elongated normal to the stretching direction or along it. In the first case, the domes are interpreted as having formed during extension. However, in the second case, they are interpreted either as strike-slip, transpressive or constrictive extensional structures, depending on the geodynamic context. Numerical models of metamorphic core complexes published to date are all two-dimensional and therefore, theoretically only apply to domes which are elongated normal to the stretching direction. Here, we explore by means of 3D thermomechanical modeling, the impact of 3D kinematic extensional boundary conditions on the shape of metamorphic core complexes. We examine the impact of a transtensional step over and of horsetail splay fault kinematics on the dynamics of exhumation, finite strain and P-T paths, and compare them to cylindrical 3D models. We show, for the first time, that domes formed in transtensional step over, or at the tip of propagating strike-slip faults, display a finite strain field which can be interpreted as characteristic of a transpressive domes, although no shortening was applied in the far-field. Applying our models to the Cyclades, we propose that the coeval formation of domes elongated normal and parallel to the stretching during the Miocene can be the result of horsetail splay fault kinematics, which could correspond to the formation of a tear in the Aegean slab.

  11. Multi Length Scale Imaging of Flocculated Estuarine Sediments; Insights into their Complex 3D Structure

    NASA Astrophysics Data System (ADS)

    Wheatland, Jonathan; Bushby, Andy; Droppo, Ian; Carr, Simon; Spencer, Kate

    2015-04-01

    Suspended estuarine sediments form flocs that are compositionally complex, fragile and irregularly shaped. The fate and transport of suspended particulate matter (SPM) is determined by the size, shape, density, porosity and stability of these flocs and prediction of SPM transport requires accurate measurements of these three-dimensional (3D) physical properties. However, the multi-scaled nature of flocs in addition to their fragility makes their characterisation in 3D problematic. Correlative microscopy is a strategy involving the spatial registration of information collected at different scales using several imaging modalities. Previously, conventional optical microscopy (COM) and transmission electron microscopy (TEM) have enabled 2-dimensional (2D) floc characterisation at the gross (> 1 µm) and sub-micron scales respectively. Whilst this has proven insightful there remains a critical spatial and dimensional gap preventing the accurate measurement of geometric properties and an understanding of how structures at different scales are related. Within life sciences volumetric imaging techniques such as 3D micro-computed tomography (3D µCT) and focused ion beam scanning electron microscopy [FIB-SEM (or FIB-tomography)] have been combined to characterise materials at the centimetre to micron scale. Combining these techniques with TEM enables an advanced correlative study, allowing material properties across multiple spatial and dimensional scales to be visualised. The aims of this study are; 1) to formulate an advanced correlative imaging strategy combining 3D µCT, FIB-tomography and TEM; 2) to acquire 3D datasets; 3) to produce a model allowing their co-visualisation; 4) to interpret 3D floc structure. To reduce the chance of structural alterations during analysis samples were first 'fixed' in 2.5% glutaraldehyde/2% formaldehyde before being embedding in Durcupan resin. Intermediate steps were implemented to improve contrast and remove pore water, achieved by the

  12. Micro-precise spatiotemporal delivery system embedded in 3D printing for complex tissue regeneration.

    PubMed

    Tarafder, Solaiman; Koch, Alia; Jun, Yena; Chou, Conrad; Awadallah, Mary R; Lee, Chang H

    2016-06-01

    Three dimensional (3D) printing has emerged as an efficient tool for tissue engineering and regenerative medicine, given its advantages for constructing custom-designed scaffolds with tunable microstructure/physical properties. Here we developed a micro-precise spatiotemporal delivery system embedded in 3D printed scaffolds. PLGA microspheres (μS) were encapsulated with growth factors (GFs) and then embedded inside PCL microfibers that constitute custom-designed 3D scaffolds. Given the substantial difference in the melting points between PLGA and PCL and their low heat conductivity, μS were able to maintain its original structure while protecting GF's bioactivities. Micro-precise spatial control of multiple GFs was achieved by interchanging dispensing cartridges during a single printing process. Spatially controlled delivery of GFs, with a prolonged release, guided formation of multi-tissue interfaces from bone marrow derived mesenchymal stem/progenitor cells (MSCs). To investigate efficacy of the micro-precise delivery system embedded in 3D printed scaffold, temporomandibular joint (TMJ) disc scaffolds were fabricated with micro-precise spatiotemporal delivery of CTGF and TGFβ3, mimicking native-like multiphase fibrocartilage. In vitro, TMJ disc scaffolds spatially embedded with CTGF/TGFβ3-μS resulted in formation of multiphase fibrocartilaginous tissues from MSCs. In vivo, TMJ disc perforation was performed in rabbits, followed by implantation of CTGF/TGFβ3-μS-embedded scaffolds. After 4 wks, CTGF/TGFβ3-μS embedded scaffolds significantly improved healing of the perforated TMJ disc as compared to the degenerated TMJ disc in the control group with scaffold embedded with empty μS. In addition, CTGF/TGFβ3-μS embedded scaffolds significantly prevented arthritic changes on TMJ condyles. In conclusion, our micro-precise spatiotemporal delivery system embedded in 3D printing may serve as an efficient tool to regenerate complex and inhomogeneous tissues. PMID

  13. 3D printing of rat salivary glands: The submandibular-sublingual complex.

    PubMed

    Cecchini, M P; Parnigotto, M; Merigo, F; Marzola, P; Daducci, A; Tambalo, S; Boschi, F; Colombo, L; Sbarbati, A

    2014-06-01

    The morphology and the functionality of the murid glandular complex, composed of the submandibular and sublingual salivary glands (SSC), were the object of several studies conducted mainly using magnetic resonance imaging (MRI). Using a 4.7 T scanner and a manganese-based contrast agent, we improved the signal-to-noise ratio of the SSC relating to the surrounding anatomical structures allowing to obtain high-contrast 3D images of the SSC. In the last few years, the large development in resin melting techniques opened the way for printing 3D objects starting from a 3D stack of images. Here, we demonstrate the feasibility of the 3D printing technique of soft tissues such as the SSC in the rat with the aim to improve the visualization of the organs. This approach is useful to preserve the real in vivo morphology of the SCC in living animals avoiding the anatomical shape changes due to the lack of relationships with the surrounding organs in case of extraction. It is also harmless, repeatable and can be applied to explore volumetric changes occurring during body growth, excretory duct obstruction, tumorigenesis and regeneration processes. 3D printing allows to obtain a solid object with the same shape of the organ of interest, which can be observed, freely rotated and manipulated. To increase the visibility of the details, it is possible to print the organs with a selected zoom factor, useful as in case of tiny organs in small mammalia. An immediate application of this technique is represented by educational classes. PMID:23822094

  14. Application of CART3D to Complex Propulsion-Airframe Integration with Vehicle Sketch Pad

    NASA Technical Reports Server (NTRS)

    Hahn, Andrew S.

    2012-01-01

    Vehicle Sketch Pad (VSP) is an easy-to-use modeler used to generate aircraft geometries for use in conceptual design and analysis. It has been used in the past to generate metageometries for aerodynamic analyses ranging from handbook methods to Navier-Stokes computational fluid dynamics (CFD). As desirable as it is to bring high order analyses, such as CFD, into the conceptual design process, this has been difficult and time consuming in practice due to the manual nature of both surface and volume grid generation. Over the last couple of years, VSP has had a major upgrade of its surface triangulation and export capability. This has enhanced its ability to work with Cart3D, an inviscid, three dimensional fluid flow toolset. The combination of VSP and Cart3D allows performing inviscid CFD on complex geometries with relatively high productivity. This paper will illustrate the use of VSP with Cart3D through an example case of a complex propulsion-airframe integration (PAI) of an over-wing nacelle (OWN) airliner configuration.

  15. 3D Simulation of Velocity Profile of Turbulent Flow in Open Channel with Complex Geometry

    NASA Astrophysics Data System (ADS)

    Kamel, Benoumessad; Ilhem, Kriba; Ali, Fourar; Abdelbaki, Djebaili

    Simulation of open channel flow or river flow presents unique challenge to numerical simulators, which is widely used in the applications of computational fluid dynamics. The prediction is extremely difficult because the flow in open channel is usually transient and turbulent, the geometry is irregular and curved, and the free-surface elevation is varying with time. The results from a 3D non-linear k- ɛ turbulence model are presented to investigate the flow structure, the velocity distribution and mass transport process in a meandering compound open channel and a straight open channel. The 3D numerical model for calculating flow is set up in cylinder coordinates in order to calculate the complex boundary channel. The finite volume method is used to disperse the governing equations and the SIMPLE algorithm is applied to acquire the coupling of velocity and pressure. The non-linear k- ɛ turbulent model has good useful value because of taking into account the anisotropy and not increasing the computational time. The main contributions of this study are developing a numerical method that can be applied to predict the flow in river bends with various bend curvatures and different width-depth ratios. This study demonstrates that the 3D non-linear k- ɛ turbulence model can be used for analyzing flow structures, the velocity distribution and pollutant transport in the complex boundary open channel, this model is applicable for real river and wetland problem.

  16. Utilizing 3d-4f magnetic interaction to slow the magnetic relaxation of heterometallic complexes.

    PubMed

    Li, Xiao-Lei; Min, Fan-Yong; Wang, Chao; Lin, Shuang-Yan; Liu, Zhiliang; Tang, Jinkui

    2015-05-01

    The synthesis, structural characterization, and magnetic properties of four related heterometallic complexes with formulas [Dy(III)2Co(II)(C7H5O2)8]·6H2O (1), [Dy(III)2Ni(II)(C7H5O2)8]·(C7H6O2)2 (2), Tb(III)2Co(II)(C7H5O2)8 (3), and Dy(III)2Cd(II)(C7H5O2)8 (4) were reported. Each of complexes has a perfectly linear arrangement of the metal ions with two terminal Ln(III) (Ln(III) = Dy(III), Tb(III)) ions and one central M(II) (M(II) = Co(II), Ni(II), Cd(II)) ion. It was found that 1-3 displayed obvious magnetic interactions between the spin carriers according to the direct current (dc) susceptibility measurements. Alternating current (ac) magnetic susceptibility measurements indicate that complexes 1-4 all exhibit single-molecule magnet (SMM) behavior, while the replacement of the diamagnetic Cd(II) by paramagnetic ions leads to a significant slowing of the relaxation thanks to the magnetic interactions between 3d and 4f ions, resulting in higher relaxation barrier for complexes 1 and 2. Moreover, both Dy2Co and Dy2Ni compounds exhibit dual relaxation pathways that may originate from the single ion behavior of individual Dy(III) ions and the coupling between Dy(III) and Co(II)/Ni(II) ions, respectively, which can be taken as the feature of 3d-4f SMMs. The Ueff for 1 of 127 K is a relatively high value among the reported 3d-4f SMMs. The results demonstrate that the magnetic coupling between 3d and 4f ions is crucial to optimize SMM parameters. The synthetic approach illustrated in this work represents an efficient route to design nd-4f based SMMs via incorporating suitable paramagnetic 3d and even 4d and 5d ions into the d-f system. PMID:25906391

  17. Local and systemic activation of the whole complement cascade in human leukocytoclastic cutaneous vasculitis; C3d,g and terminal complement complex as sensitive markers.

    PubMed Central

    Dauchel, H; Joly, P; Delpech, A; Thomine, E; Sauger, F; Le Loet, X; Lauret, P; Tron, F; Fontaine, M; Ripoche, J

    1993-01-01

    We have studied complement activation both in plasma samples and in lesional skin from patients with leukocytoclastic cutaneous vasculitis (LCV). Enzyme immunoassay (EIA) quantification of the complement activation markers, C3d,g and the terminal complement complex (TCC) in plasma, showed that their levels were significantly increased in 66% and 55% of the patients, respectively (n = 29) compared with healthy controls, whereas the standard measurements of C3, factor B, C1q, C4 and C2 were generally within normal range. Elevations of C3d,g and TCC levels in plasma were significantly correlated. Importantly, a significant correlation was found between the severity of the vasculitis and both C3d,g and TCC plasma levels. Immunofluorescence studies of skin biopsy specimens demonstrated simultaneous presence of perivascular dermal deposits of C3d,g and TCC in lesional skin from 96% and 80% respectively of the patients (n = 25). There was a significant correlation between the intensity of the deposits of both markers. Clusterin, a TCC inhibitory protein, was always found at the same sites of perivascular TCC deposits. Immunofluorescence studies at the epidermal basement membrane zone (BMZ) revealed in each case deposits of C3d,g which were accompanied by TCC deposits in 52% of the biopsy specimens. These data demonstrate that there is a local and systemic activation of the whole complement cascade in human LCV. The presence of both C3d,g and clusterin-associated TCC perivascular deposits suggests an intervention of a regulatory mechanism of local complement activation in LCV. Finally, measurement of plasma C3d,g and TCC appears to be a sensitive indicator of systemic complement activation and disease severity in LCV. Images Fig. 1 Fig. 2 PMID:8485913

  18. Extracting, Tracking, and Visualizing Magnetic Flux Vortices in 3D Complex-Valued Superconductor Simulation Data.

    PubMed

    Guo, Hanqi; Phillips, Carolyn L; Peterka, Tom; Karpeyev, Dmitry; Glatz, Andreas

    2016-01-01

    We propose a method for the vortex extraction and tracking of superconducting magnetic flux vortices for both structured and unstructured mesh data. In the Ginzburg-Landau theory, magnetic flux vortices are well-defined features in a complex-valued order parameter field, and their dynamics determine electromagnetic properties in type-II superconductors. Our method represents each vortex line (a 1D curve embedded in 3D space) as a connected graph extracted from the discretized field in both space and time. For a time-varying discrete dataset, our vortex extraction and tracking method is as accurate as the data discretization. We then apply 3D visualization and 2D event diagrams to the extraction and tracking results to help scientists understand vortex dynamics and macroscale superconductor behavior in greater detail than previously possible. PMID:26529730

  19. 3D magnetospheric parallel hybrid multi-grid method applied to planet-plasma interactions

    NASA Astrophysics Data System (ADS)

    Leclercq, L.; Modolo, R.; Leblanc, F.; Hess, S.; Mancini, M.

    2016-03-01

    We present a new method to exploit multiple refinement levels within a 3D parallel hybrid model, developed to study planet-plasma interactions. This model is based on the hybrid formalism: ions are kinetically treated whereas electrons are considered as a inertia-less fluid. Generally, ions are represented by numerical particles whose size equals the volume of the cells. Particles that leave a coarse grid subsequently entering a refined region are split into particles whose volume corresponds to the volume of the refined cells. The number of refined particles created from a coarse particle depends on the grid refinement rate. In order to conserve velocity distribution functions and to avoid calculations of average velocities, particles are not coalesced. Moreover, to ensure the constancy of particles' shape function sizes, the hybrid method is adapted to allow refined particles to move within a coarse region. Another innovation of this approach is the method developed to compute grid moments at interfaces between two refinement levels. Indeed, the hybrid method is adapted to accurately account for the special grid structure at the interfaces, avoiding any overlapping grid considerations. Some fundamental test runs were performed to validate our approach (e.g. quiet plasma flow, Alfven wave propagation). Lastly, we also show a planetary application of the model, simulating the interaction between Jupiter's moon Ganymede and the Jovian plasma.

  20. Properties of the prominence magnetic field and plasma distributions as obtained from 3D whole-prominence fine structure modeling

    NASA Astrophysics Data System (ADS)

    Gunár, S.; Mackay, D. H.

    2016-07-01

    Aims: We analyze distributions of the magnetic field strength and prominence plasma (temperature, pressure, plasma β, and mass) using the 3D whole-prominence fine structure model. Methods: The model combines a 3D magnetic field configuration of an entire prominence, obtained from non-linear force-free field simulations, with a detailed semi-empirically derived description of the prominence plasma. The plasma is located in magnetic dips in hydrostatic equilibrium and is distributed along multiple fine structures within the 3D magnetic model. Results: We show that in the modeled prominence, the variations of the magnetic field strength and its orientation are insignificant on scales comparable to the smallest dimensions of the observed prominence fine structures. We also show the ability of the 3D whole-prominence fine structure model to reveal the distribution of the prominence plasma with respect to its temperature within the prominence volume. This provides new insights into the composition of the prominence-corona transition region. We further demonstrate that the values of the plasma β are small throughout the majority of the modeled prominences when realistic photospheric magnetic flux distributions and prominence plasma parameters are assumed. While this is generally true, we also find that in the region with the deepest magnetic dips, the plasma β may increase towards unity. Finally, we show that the mass of the modeled prominence plasma is in good agreement with the mass of observed non-eruptive prominences.

  1. 3D modelling of heating of thermionic cathodes by high-pressure arc plasmas

    NASA Astrophysics Data System (ADS)

    Benilov, M. S.; Carpaij, M.; Cunha, M. D.

    2006-05-01

    Numerical investigation of steady-state interaction of a high-pressure argon plasma with a cylindrical tungsten cathode is reported. A whole 'zoo' of very diverse modes of current transfer is revealed. Detailed results are given for the first five (three-dimensional) 3D spot modes, four of them branching off from the diffuse mode and one from the first axially symmetric spot mode. Divergences in the general pattern of solutions, which have been present in preceding works, are resolved. Hypotheses on stability of steady-state solutions, available in the literature, are analysed. It is found that these hypotheses provide an explanation of the fact that the transition between diffuse and spot modes is difficult to reproduce in the experiment but they do not explain the indication that it is the low-voltage branch of the first 3D spot mode that seems to occur in the experiment. Thus, the question of stability of steady-state solutions remains open: an accurate stability analysis, as well as additional experimental information is required.

  2. 3D printing of gas jet nozzles for laser-plasma accelerators

    NASA Astrophysics Data System (ADS)

    Döpp, A.; Guillaume, E.; Thaury, C.; Gautier, J.; Ta Phuoc, K.; Malka, V.

    2016-07-01

    Recent results on laser wakefield acceleration in tailored plasma channels have underlined the importance of controlling the density profile of the gas target. In particular, it was reported that the appropriate density tailoring can result in improved injection, acceleration, and collimation of laser-accelerated electron beams. To achieve such profiles, innovative target designs are required. For this purpose, we have reviewed the usage of additive layer manufacturing, commonly known as 3D printing, in order to produce gas jet nozzles. Notably we have compared the performance of two industry standard techniques, namely, selective laser sintering (SLS) and stereolithography (SLA). Furthermore we have used the common fused deposition modeling to reproduce basic gas jet designs and used SLA and SLS for more sophisticated nozzle designs. The nozzles are characterized interferometrically and used for electron acceleration experiments with the Salle Jaune terawatt laser at Laboratoire d'Optique Appliquée.

  3. 3D printing of gas jet nozzles for laser-plasma accelerators.

    PubMed

    Döpp, A; Guillaume, E; Thaury, C; Gautier, J; Ta Phuoc, K; Malka, V

    2016-07-01

    Recent results on laser wakefield acceleration in tailored plasma channels have underlined the importance of controlling the density profile of the gas target. In particular, it was reported that the appropriate density tailoring can result in improved injection, acceleration, and collimation of laser-accelerated electron beams. To achieve such profiles, innovative target designs are required. For this purpose, we have reviewed the usage of additive layer manufacturing, commonly known as 3D printing, in order to produce gas jet nozzles. Notably we have compared the performance of two industry standard techniques, namely, selective laser sintering (SLS) and stereolithography (SLA). Furthermore we have used the common fused deposition modeling to reproduce basic gas jet designs and used SLA and SLS for more sophisticated nozzle designs. The nozzles are characterized interferometrically and used for electron acceleration experiments with the Salle Jaune terawatt laser at Laboratoire d'Optique Appliquée. PMID:27475557

  4. M3D-K simulations of sawteeth and energetic particle transport in tokamak plasmas

    NASA Astrophysics Data System (ADS)

    Shen, Wei; Fu, G. Y.; Sheng, Zheng-Mao; Breslau, J. A.; Wang, Feng

    2014-09-01

    Nonlinear simulations of sawteeth and related energetic particle transport are carried out using the kinetic/magnetohydrodynamic (MHD) hybrid code M3D-K. MHD simulations show repeated sawtooth cycles for a model tokamak equilibrium. Furthermore, test particle simulations are carried out to study the energetic particle transport due to a sawtooth crash. The results show that energetic particles are redistributed radially in the plasma core, depending on pitch angle and energy. For trapped particles, the redistribution occurs for particle energy below a critical value in agreement with existing theories. For co-passing particles, the redistribution is strong with little dependence on particle energy. In contrast, the redistribution level of counter-passing particles decreases with increasing particle energy.

  5. M3D-K Simulations of Sawteeth and Energetic Particle Transport in Tokamak Plasmas

    NASA Astrophysics Data System (ADS)

    Shen, Wei; Fu, Guoyong; Sheng, Zhengmao; Breslau, Joshua; Wang, Feng

    2013-10-01

    Nonlinear simulations of Sawteeth and energetic particle transport are carried out using the kinetic/MHD hybrid code M3D-K. MHD simulations show repeated sawtooth cycles due to a resistive (1,1) internal kink mode for a model tokamak equilibrium. Furthermore, test particle simulations are carried out to study the energetic particle transport due to a sawtooth crash. The results show that energetic particles are redistributed radially in plasma core depending on pitch angle and energy. For trapped particles, the redistribution occurs for particle energy below a critical value in agreement with previous theory. For co-passing particles, the redistribution is strong with little dependence on particle energy. In contrast, the redistribution level of counter-passing particles decreases as particle energy becomes large.

  6. M3D-K simulations of sawteeth and energetic particle transport in tokamak plasmas

    SciTech Connect

    Shen, Wei; Sheng, Zheng-Mao; Fu, G. Y.; Breslau, J. A.; Wang, Feng

    2014-09-15

    Nonlinear simulations of sawteeth and related energetic particle transport are carried out using the kinetic/magnetohydrodynamic (MHD) hybrid code M3D-K. MHD simulations show repeated sawtooth cycles for a model tokamak equilibrium. Furthermore, test particle simulations are carried out to study the energetic particle transport due to a sawtooth crash. The results show that energetic particles are redistributed radially in the plasma core, depending on pitch angle and energy. For trapped particles, the redistribution occurs for particle energy below a critical value in agreement with existing theories. For co-passing particles, the redistribution is strong with little dependence on particle energy. In contrast, the redistribution level of counter-passing particles decreases with increasing particle energy.

  7. Hybrid C-nanotubes/Si 3D nanostructures by one-step growth in a dual-plasma reactor

    NASA Astrophysics Data System (ADS)

    Toschi, Francesco; Orlanducci, Silvia; Guglielmotti, Valeria; Cianchetta, Ilaria; Magni, Corrado; Terranova, Maria Letizia; Pasquali, Matteo; Tamburri, Emanuela; Matassa, Roberto; Rossi, Marco

    2012-06-01

    Hybrid nanostructures consisting of Si polycrystalline nanocones, with an anemone-like termination coated with C-nanotubes bundles, have been generated on a (1 0 0) Si substrate in a dual mode microwave/radio-frequency plasma reactor. The substrate is both heated and bombarded by energetic H ions during the synthesis process. The nanocones growth is explained considering pull of the growing Si nanocrystalline phase along the lines of the electrical field, likely via a molten/recrystallization mechanism. The one-step building of the achieved complex 3D architectures is described in terms of dynamic competition between Si and C nanotubes growth under the peculiar conditions of kinetically driven processes.

  8. SVD-GFD scheme to simulate complex moving body problems in 3D space

    NASA Astrophysics Data System (ADS)

    Wang, X. Y.; Yu, P.; Yeo, K. S.; Khoo, B. C.

    2010-03-01

    The present paper presents a hybrid meshfree-and-Cartesian grid method for simulating moving body incompressible viscous flow problems in 3D space. The method combines the merits of cost-efficient and accurate conventional finite difference approximations on Cartesian grids with the geometric freedom of generalized finite difference (GFD) approximations on meshfree grids. Error minimization in GFD is carried out by singular value decomposition (SVD). The Arbitrary Lagrangian-Eulerian (ALE) form of the Navier-Stokes equations on convecting nodes is integrated by a fractional-step projection method. The present hybrid grid method employs a relatively simple mode of nodal administration. Nevertheless, it has the geometrical flexibility of unstructured mesh-based finite-volume and finite element methods. Boundary conditions are precisely implemented on boundary nodes without interpolation. The present scheme is validated by a moving patch consistency test as well as against published results for 3D moving body problems. Finally, the method is applied on low-Reynolds number flapping wing applications, where large boundary motions are involved. The present study demonstrates the potential of the present hybrid meshfree-and-Cartesian grid scheme for solving complex moving body problems in 3D.

  9. Development of melt electrohydrodynamic 3D printing for complex microscale poly (ε-caprolactone) scaffolds.

    PubMed

    He, Jiankang; Xia, Peng; Li, Dichen

    2016-01-01

    The replication of native hierarchical structures into synthetic scaffolds is important to direct cell growth and tissue regeneration. However, most of the existing scaffold strategies lack the capability to simultaneously realize the controlled fabrication of macroscopic geometries as well as microscale architectures with the scale similar to living cells. Here we developed a melt electrohydrodynamic printing platform and verified its feasibility to fabricate three-dimensional (3D) tissue-engineered scaffolds with complex curved geometries and microscale fibrous structures. Melting temperature was studied to stably print poly (ε-caprolactone) (PCL) filaments with the size of about 10 μm, which was precisely stacked into 3D straight walls with fine surface quality. By adjusting stage moving speed and directions, 3D PCL scaffolds with curved contours and predefined fiber orientations or spacing were successfully printed. Biological experiments showed that the printed microscale scaffolds had good biocompatibility and facilitated cellular proliferation and alignment in vitro. It is envisioned that the melt electrohydrodynamic printing can potentially provide an innovative tool to fabricate hierarchical scaffolds that mimic the native tissue architectures in a multiscale level. PMID:27490377

  10. Flexible simulation framework to couple processes in complex 3D models for subsurface utilization assessment

    NASA Astrophysics Data System (ADS)

    Kempka, Thomas; Nakaten, Benjamin; De Lucia, Marco; Nakaten, Natalie; Otto, Christopher; Pohl, Maik; Tillner, Elena; Kühn, Michael

    2016-04-01

    Utilization of the geological subsurface for production and storage of hydrocarbons, chemical energy and heat as well as for waste disposal requires the quantification and mitigation of environmental impacts as well as the improvement of georesources utilization in terms of efficiency and sustainability. The development of tools for coupled process simulations is essential to tackle these challenges, since reliable assessments are only feasible by integrative numerical computations. Coupled processes at reservoir to regional scale determine the behaviour of reservoirs, faults and caprocks, generally demanding for complex 3D geological models to be considered besides available monitoring and experimenting data in coupled numerical simulations. We have been developing a flexible numerical simulation framework that provides efficient workflows for integrating the required data and software packages to carry out coupled process simulations considering, e.g., multiphase fluid flow, geomechanics, geochemistry and heat. Simulation results are stored in structured data formats to allow for an integrated 3D visualization and result interpretation as well as data archiving and its provision to collaborators. The main benefits in using the flexible simulation framework are the integration of data geological and grid data from any third party software package as well as data export to generic 3D visualization tools and archiving formats. The coupling of the required process simulators in time and space is feasible, while different spatial dimensions in the coupled simulations can be integrated, e.g., 0D batch with 3D dynamic simulations. User interaction is established via high-level programming languages, while computational efficiency is achieved by using low-level programming languages. We present three case studies on the assessment of geological subsurface utilization based on different process coupling approaches and numerical simulations.

  11. Impact of plasma response on plasma displacements in DIII-D during application of external 3D perturbations

    SciTech Connect

    Wingen, Andreas; Ferraro, N. M.; Shafer, M.W.; Unterberg, Ezekial A; Evans, T. E.; Hillis, Donald Lee; Snyder, P. B.

    2014-01-01

    The effects of applied 3D resonant magnetic perturbations are modelled with and without self-consistent plasma response. The plasma response is calculated using a linear two-fluid model. A synthetic diagnostic is used to simulate soft x-ray (SXR) emission within the steep gradient region of the pedestal, 0.98 > > 0.94. Two methods for simulating the SXR emission given the perturbed fields are considered. In the first method, the emission is assumed to be constant on magnetic field lines, with the emission on each line determined by the penetration depth into the plasma. In the second method, the emission is taken to be a function of the perturbed electron temperature and density calculated by the two-fluid model. It is shown that the latter method is more accurate within the plasma, but is inadequate in the scrape-off layer due to the breakdown of the linearized temperature equation in the two-fluid model. The resulting synthetic emission is compared to measured SXR data, which show helical m = 11 1 displacements around the 11/3 rational surface of sizes up to 5 cm, depending on the poloidal angle. The helical displacements around the 11/3 surface are identified to be directly related to the kink response, caused by amplification of non-resonant components of the magnetic field due to plasma response. The role of different plasma parameters is investigated, but it appears that the electron rotation plays a key role in the formation of screening and resonant amplification, while the kinking appears to be sensitive to the edge current density. It is also hypothesized that the plasma response affects the edge-localized-mode (ELM) stability, i.e. the discharge s operational point relative to the peeling ballooning stability boundary.

  12. From Tls to Hbim. High Quality Semantically-Aware 3d Modeling of Complex Architecture

    NASA Astrophysics Data System (ADS)

    Quattrini, R.; Malinverni, E. S.; Clini, P.; Nespeca, R.; Orlietti, E.

    2015-02-01

    In order to improve the framework for 3D modeling, a great challenge is to obtain the suitability of Building Information Model (BIM) platform for historical architecture. A specific challenge in HBIM is to guarantee appropriateness of geometrical accuracy. The present work demonstrates the feasibility of a whole HBIM approach for complex architectural shapes, starting from TLS point clouds. A novelty of our method is to work in a 3D environment throughout the process and to develop semantics during the construction phase. This last feature of HBIM was analyzed in the present work verifying the studied ontologies, enabling the data enrichment of the model with non-geometrical information, such as historical notes, decay or deformation evidence, decorative elements etc. The case study is the Church of Santa Maria at Portonovo, an abbey from the Romanesque period. Irregular or complex historical architecture, such as Romanesque, needs the construction of shared libraries starting from the survey of its already existing elements. This is another key aspect in delivering Building Information Modeling standards. In particular, we focus on the quality assessment of the obtained model, using an open-source sw and the point cloud as reference. The proposed work shows how it is possible to develop a high quality 3D model semantic-aware, capable of connecting geometrical-historical survey with descriptive thematic databases. In this way, a centralized HBIM will serve as comprehensive dataset of information about all disciplines, particularly for restoration and conservation. Moreover, the geometric accuracy will ensure also reliable visualization outputs.

  13. Complex Structures in Sediments Overlying Sinkholes: 3D-GPR and Azimuthal Resistivity Imaging

    NASA Astrophysics Data System (ADS)

    Kruse, S.; Kiflu, H. G.; Ammar, A. I., Sr.; Karashay, P., III; Marshall, A. M.; McNiff, C. M.

    2014-12-01

    3D GPR surveys in the covered karst terrain of west-central Florida, USA, reveal surprising geometries of surficial sediments. Several meters of surficial sands overlie progressively more clay-rich sediments, which in turn overlie weathered limestone. The top of a clay-rich horizon produces an exceptionally clear GPR reflector visible from depths between 0.5 and ~8 meters. On length scales of 10-20 meters, the geometry of this horizon as it drapes over underlying weathered limestone suggests that depressions are not conical, but instead more complex troughs that surround domed stratigraphic highs. Azimuthal semi-variograms of the clay horizon depth show greatest correlation in directions that are aligned with the direction of elevated resistivities at depths to 10-14 meters. One possible interpretation is that dissolution in underlying limestone is concentrated in elongated zones rather than in columnar or spherical voids. Elongated sand-filled depressions in the clay layer produce azimuthal resistivity highs in the direction of the elongation. This direction in turn corresponds to the major axis of depressions in the clay-rich GPR reflecting horizon. Groundwater recharge in this area is concentrated into conduits that breach the clay-rich units that overlie the limestone aquifer. This study suggests that the conduits themselves may be elongated features rather than cylindrical in form. Recharge flow paths may be more complex than previously recognized. The high-resolution GPR images require 3D surveys with 250 MHz and 500 MHz antennas, with 10-cm line spacings, careful corrections for antenna positions and 3D migrations of the data.

  14. Nonlinear dynamics of the 3D FMS and Alfven wave beams propagating in plasma of ionosphere and magnetosphere

    NASA Astrophysics Data System (ADS)

    Belashov, Vasily

    We study the formation, structure, stability and dynamics of the multidimensional soliton-like beam structures forming on the low-frequency branch of oscillation in the ionospheric and magnetospheric plasma for cases when beta=4pinT/B(2) <<1 and beta>1. In first case with the conditions omega>{k_{yz}}(2,) v_{x}$<3D Belashov-Karpman (BK) equation [1] for magnetic field h=B_{wave}/B with due account of the high order dispersive correction defined by values of plasma parameters and the angle Theta=(B,k) [2]. In another case the dynamics of the finite-amplitude Alfvén waves propagating in the ionosphere and magnetosphere near-to-parallel to the field B is described by the 3D derivative nonlinear Schrödinger (3-DNLS) equation for the magnetic field of the wave h=(B_{y}+iB_{z})/2B/1-beta/ [3]. To study the stability of multidimensional solitons in both cases we use the method developed in [2] and investigated the Hamiltonian bounding with its deformation conserving momentum by solving the corresponding variation problem. To study evolution of solitons and their collision dynamics the proper equations were being integrated numerically using the codes specially developed and described in detail in [3]. As a result, we have obtained that in both cases for a single solitons on a level with wave spreading and collapse the formation of multidimensional solitons can be observed. These results may be interpreted in terms of self-focusing phenomenon for the FMS and Alfvén waves’ beam as stationary beam formation, scattering and self-focusing of wave beam. The soliton collisions on a level with known elastic interaction can lead to formation of complex structures including the multisoliton bound states. For all cases the problem of multidimensional soliton dynamics in the ionospheric and

  15. Finite Gyroradius Effects in the Plasma Environment Near Titan: 3D Hybrid Modeling of the T5 Encounter

    NASA Astrophysics Data System (ADS)

    Simpson, D. G.; Lipatov, A. S.; Sittler, E. C.; Cooper, J. F.; Hartle, R. E.; Sarantos, M.

    2012-12-01

    In this report we discuss the results of a 3D hybrid modeling of the interaction between Saturn's magnetosphere and Titan's atmosphere/ionosphere for the T5 encounter. The T5 flyby is the only encounter when the two main ionizing sources of Titan's atmosphere, solar radiation and corotating plasma, align quasi-anti-parallel. The model is based on recent analysis of the Cassini Plasma Spectrometer (CAPS) and the Cassini Ion and Neutral Mass Spectrometer (INMS) measurements during the T5 flyby through Titan's ram-side and polar ionosphere [1,2]. Magnetic field data was used from the MAG instrument [3]. In our model the background ions (O+, H+), all pickup ions, and ionospheric ions are considered as a particles, whereas the electrons are described as a fluid (see e.g. [4]). Inhomogeneous photoionization (in the dayside ionosphere), electron-impact ionization, and charge exchange are included in our model. The temperature of the background electrons and pickup electrons was also incorporated into the generalized Ohm's law. We also take into account collisions between ions and neutrals. In our hybrid simulations we use Chamberlain profiles for the exosphere's components. The moon is considered as a weakly conducting body. The first results of our hybrid modeling show a strong asymmetry in the background (H+, O+) and pickup (H2+, N2+, CH4+) ion density profiles. Such strong asymmetry cannot be explained by a single-fluid multi-species 3D MHD model [5], which includes complex chemistry but does not produce finite gyroradius and kinetic effects. References [1] Sittler, et al., Energy Deposition Processes in Titan's Atmosphere and Its Induced Magnetosphere. In: Titan from Cassini-Huygens, Brown, R.H., Lebreton, J.P., Waite, J.H., Eds., Springer, (Dordrecht, Heidelberg, London, New York), pp. 393-455, 2010. [2] Agren, K., et al., On magnetosphere electron impact ionization and dynamics in Titan's ram-side and polar ionosphere -- a Cassini case study, Ann. Geophys., 25, 2359

  16. A 3D modeling approach to complex faults with multi-source data

    NASA Astrophysics Data System (ADS)

    Wu, Qiang; Xu, Hua; Zou, Xukai; Lei, Hongzhuan

    2015-04-01

    Fault modeling is a very important step in making an accurate and reliable 3D geological model. Typical existing methods demand enough fault data to be able to construct complex fault models, however, it is well known that the available fault data are generally sparse and undersampled. In this paper, we propose a workflow of fault modeling, which can integrate multi-source data to construct fault models. For the faults that are not modeled with these data, especially small-scale or approximately parallel with the sections, we propose the fault deduction method to infer the hanging wall and footwall lines after displacement calculation. Moreover, using the fault cutting algorithm can supplement the available fault points on the location where faults cut each other. Increasing fault points in poor sample areas can not only efficiently construct fault models, but also reduce manual intervention. By using a fault-based interpolation and remeshing the horizons, an accurate 3D geological model can be constructed. The method can naturally simulate geological structures no matter whether the available geological data are sufficient or not. A concrete example of using the method in Tangshan, China, shows that the method can be applied to broad and complex geological areas.

  17. Complex modes and effective refractive index in 3D periodic arrays of plasmonic nanospheres.

    PubMed

    Campione, Salvatore; Steshenko, Sergiy; Albani, Matteo; Capolino, Filippo

    2011-12-19

    We characterize the modes with complex wavenumber for both longitudinal and transverse polarization states (with respect to the mode traveling direction) in three dimensional (3D) periodic arrays of plasmonic nanospheres, including metal losses. The Ewald representation of the required dyadic periodic Green's function to represent the field in 3D periodic arrays is derived from the scalar case, which can be analytically continued into the complex wavenumber space. We observe the presence of one longitudinal mode and two transverse modes, one forward and one backward. Despite the presence of two modes for transverse polarization, we notice that the forward one is "dominant" (i.e., it contributes most to the field in the array). Therefore, in case of transverse polarization, we describe the composite material in terms of a homogenized effective refractive index, comparing results from (i) modal analysis, (ii) Maxwell Garnett theory, (iii) Nicolson-Ross-Weir retrieval method from scattering parameters for finite thickness structures (considering different thicknesses, showing consistency of results), and (iv) the fitting of the fields obtained through HFSS simulations. The agreement among the different methods justifies the performed homogenization procedure in case of transverse polarization. PMID:22274192

  18. Experimental and Numerical Investigation of Forging Process to Reproduce a 3D Aluminium Foam Complex Shape

    SciTech Connect

    Filice, Luigino; Gagliardi, Francesco; Umbrello, Domenico; Shivpuri, Rajiv

    2007-05-17

    Metallic foams represent one of the most exciting materials introduced in the manufacturing scenario in the last years. In the study here addressed, the experimental and numerical investigations on the forging process of a simple foam billet shaped into complex sculptured parts were carried out. In particular, the deformation behavior of metallic foams and the development of density gradients were investigated through a series of experimental forging tests in order to produce a selected portion of a hip prosthesis. The human bone replacement was chosen as case study due to its industrial demand and for its particular 3D complex shape. A finite element code (Deform 3D) was utilized for modeling the foam behavior during the forging process and an accurate material rheology description was used based on a porous material model which includes the measured local density. Once the effectiveness of the utilized Finite Element model was verified through the comparison with the experimental evidences, a numerical study of the influence of the foam density was investigated. The obtained numerical results shown as the initial billet density plays an important role on the prediction of the final shape, the optimization of the flash as well as the estimation of the punch load.

  19. A simple configuration for fabrication of 2D and 3D photonic quasicrystals with complex structures

    NASA Astrophysics Data System (ADS)

    Sun, XiaoHong; Wang, Shuai; Liu, Wei; Jiang, LiuDi

    2016-06-01

    A simple method using a single-prism common-path interferometer is presented for the fabrication of complex quasicrystals in sub-micrometer scales. Multiple types of two-dimensional (2D) and three-dimensional (3D) quasicrystalline structures are designed and their diffraction patterns are obtained by using Fourier Transform method. Multi-fold rotational symmetries are demonstrated and compared. By using this method, a wide range of quasicrystals types can be produced with arbitrary complexities and rotational symmetries. The transmittance studies of 12-fold and 18-fold structures also reveal the existence of complete photonic bandgaps, which also demonstrates increased symmetry and significantly improved characteristics of photonic band-gaps.

  20. Modeling 3-D flow in the mantle wedge with complex slab geometries: Comparisons with seismic anisotropy

    NASA Astrophysics Data System (ADS)

    Kincaid, C. R.; MacDougall, J. G.; Druken, K. A.; Fischer, K. M.

    2010-12-01

    Understanding patterns in plate scale mantle flow in subduction zones is key to models of thermal structure, dehydration reactions, volatile distributions and magma generation and transport in convergent margins. Different patterns of flow in the mantle wedge can generate distinct signatures in seismological observables. Observed shear wave fast polarization directions in several subduction zones are inconsistent with predictions of simple 2-D wedge corner flow. Geochemical signatures in a number of subduction zones also indicate 3-D flow and entrainment patterns in the wedge. We report on a series of laboratory experiments on subduction driven flow to characterize spatial and temporal variability in 3-D patterns in flow and shear-induced finite strain. Cases focus on how rollback subduction, along-strike dip changes in subducting plates and evolving gaps or tears in subduction zones control temporal-spatial patterns in 3-D wedge flow. Models utilize a glucose working fluid with a temperature dependent viscosity to represent the upper 2000 km of the mantle. Subducting lithosphere is modeled with two rubber-reinforced continuous belts. Belts pass around trench and upper/lower mantle rollers. The deeper rollers can move laterally to allow for time varying dip angle. Each belt has independent speed control and dip adjustment, allowing for along-strike changes in convergence rate and the evolution of slab gaps. Rollback is modeled using a translation system to produce either uniform and asymmetric lateral trench motion. Neutral density finite strain markers are distributed throughout the fluid and used as proxies for tracking the evolution of anisotropy through space and time in the evolving flow fields. Particle image velocimetry methods are also used to track time varying 3-D velocity fields for directly calculating anisotropy patterns. Results show that complex plate motions (rollback, steepening) and morphologies (gaps) in convergent margins produce flows with

  1. Complex patterns of faulting revealed by 3D seismic data at the West Galicia rifted margin

    NASA Astrophysics Data System (ADS)

    Reston, Timothy; Cresswell, Derren; Sawyer, Dale; Ranero, Cesar; Shillington, Donna; Morgan, Julia; Lymer, Gael

    2015-04-01

    The west Galicia margin is characterised by crust thinning to less than 3 km, well-defined fault blocks, which overlie a bright reflection (the S reflector) generally interpreted as a tectonic Moho. The margin exhibits neither voluminous magmatism nor thick sediment piles to obscure the structures and the amount of extension. As such is represents an ideal location to study the process of continental breakup both through seismic imaging and potentially through drilling. Prestack depth migration of existing 2D profiles has strongly supported the interpretation of the S reflector as both a detachment and as the crust-mantle boundary; wide-angle seismic has also shown that the mantle beneath S is serpentinised. Despite the quality of the existing 2D seismic images, a number of competing models have been advanced to explain the formation of this margin, including sequential faulting, polyphase faulting, multiple detachments and the gravitational collapse of the margin over exhumed mantle. As these models, all developed for the Galicia margin, have been subsequently applied to other margins, distinguishing between them has implications not only for the structure of the Galicia margin but for the process of rifting through to breakup more generally. To address these issues in summer of 2013 we collected a 3D combined seismic reflection and wide-angle dataset over this margin. Here we present some of the results of ongoing processing of the 3D volume, focussing on the internal structure of some of the fault blocks that overlies the S detachment. 2D processing of the data shows a relatively simple series of tilted fault block, bound by west-dipping faults that detach downwards onto the bright S reflector. However, inspection of the 3D volume produced by 3D pre-stack time migration reveals that the fault blocks contain a complex set of sedimentary packages, with strata tilted to the east, west, north and south, each package bound by faults. Furthermore, the top of crustal

  2. 3D structure and formation of hydrothermal vent complexes in the Møre Basin

    NASA Astrophysics Data System (ADS)

    Kjoberg, Sigurd; Schmiedel, Tobias; Planke, Sverre; Svensen, Henrik H.; Galland, Oliver; Jerram, Dougal A.

    2016-04-01

    The mid-Norwegian Møre margin is regarded as a type example of a volcanic rifted margin, with its formation usually related to the influence of the Icelandic plume activity. The area is characterized by the presence of voluminous basaltic complexes such as extrusive lava sequences, intrusive sills and dikes, and hydrothermal vent complexes within the Møre Basin. Emplacement of hydrothermal vent complexes is accommodated by deformation of the host rock. The edges of igneous intrusions mobilize fluids by heat transfer into the sedimentary host rock (aureoles). Fluid expansion may lead to formation of piercing structures due to upward fluid migration. Hydrothermal vent complexes induce bending of overlying strata, leading to the formation of dome structures at the paleo-surface. These dome structures are important as they indicate the accommodation created for the intrusions by deformation of the upper layers of the stratigraphy, and may form important structures in many volcanic margins. Both the morphological characteristics of the upper part and the underlying feeder-structure (conduit-zone) can be imaged and studied on 3D seismic data. Seismic data from the Tulipan prospect located in the western part of the Møre Basin have been used in this study. The investigation focusses on (1) the vent complex geometries, (2) the induced surface deformation patterns, (3) the relation to the intrusions (heat source), as well as (4) the emplacement depth of the hydrothermal vent complexes. We approach this by doing a detailed 3D seismic interpretation of the Tulipan seismic data cube. The complexes formed during the initial Eocene, and are believed to be a key factor behind the rapid warming event called the Paleocene-Eocene thermal maximum (PETM). The newly derived understanding of age, eruptive deposits, and formation of hydrothermal vent complexes in the Møre Basin enables us to contribute to the general understanding of the igneous plumbing system in volcanic basins and

  3. 3D magnetohydrodynamic modelling of a dc low-current plasma arc batch reactor at very high pressure in helium

    NASA Astrophysics Data System (ADS)

    Lebouvier, A.; Iwarere, S. A.; Ramjugernath, D.; Fulcheri, L.

    2013-04-01

    This paper deals with a three-dimensional (3D) time-dependent magnetohydrodynamic (MHD) model under peculiar conditions of very high pressures (from 2 MPa up to 10 MPa) and low currents (<1 A). Studies on plasma arc working under these unusual conditions remain almost unexplored because of the technical and technological challenges to develop a reactor able to sustain a plasma at very high pressures. The combined effect of plasma reactivity and high pressure would probably open the way towards new promising applications in various fields: chemistry, lightning, materials or nanomaterial synthesis. A MHD model helps one to understand the complex and coupled phenomena surrounding the plasma which cannot be understood by simply experimentation. The model also provides data which are difficult to directly determine experimentally. The model simulates an experimental-based batch reactor working with helium. The particular reactor in question was used to investigate the Fischer-Tropsch application, fluorocarbon production and CO2 retro-conversion. However, as a first approach in terms of MHD, the model considers the case for helium as a non-reactive working gas. After a detailed presentation of the model, a reference case has been fully analysed (P = 8 MPa, I = 0.35 A) in terms of physical properties. The results show a bending of the arc and displacement of the anodic arc root towards the top of the reactor, due to the combined effects of convection, gravity and electromagnetic forces. A parametric study on the pressure (2-10 MPa) and current (0.25-0.4 A) was then investigated. The operating pressure does not show an influence on the contraction of the arc but higher pressures involve a higher natural convection in the reactor, driven by the density gradients between the cold and hot gas.

  4. A 3D parallel simulator for crystal growth and solidification in complex alloy systems

    NASA Astrophysics Data System (ADS)

    Nestler, Britta

    2005-02-01

    A 3D parallel simulator is developed to numerically solve the evolution equations of a new non-isothermal phase-field model for crystal growth and solidification in complex alloy systems. The new model and the simulator are capable to simultaneously describe the diffusion processes of multiple components, the phase transitions between multiple phases and the development of the temperature field. Weak and facetted formulations of both, surface energy and kinetic anisotropies are incorporated in the phase-field model. Multicomponent bulk diffusion effects including interdiffusion coefficients as well as diffusion in the interfacial region of phase or grain boundaries are considered. We introduce our parallel simulator that is based on a finite difference discretization including effective adaptive strategies and multigrid methods to reduce computation time and memory usage. The parallelization is realized for distributed as well as shared memory computer architectures using MPI libraries and OpenMP concepts. Applying the new computer model, we present a variety of simulated crystal structures such as dendrites, grains, binary and ternary eutectics in 2D and 3D. The influence of anisotropy on the microstructure evolution shows the formation of facets in preferred crystallographic directions. Phase transformations and solidification processes in a real multi-component alloy can be described by incorporating the physical data (e.g. surface tensions, kinetic coefficients, specific heat, heat and mass diffusion coefficients) and the specific phase diagram (in particular latent heats and melting temperatures) into the diffuse interface model via the free energies.

  5. Modelling of Complex Plasmas

    NASA Astrophysics Data System (ADS)

    Akdim, Mohamed Reda

    2003-09-01

    Nowadays plasmas are used for various applications such as the fabrication of silicon solar cells, integrated circuits, coatings and dental cleaning. In the case of a processing plasma, e.g. for the fabrication of amorphous silicon solar cells, a mixture of silane and hydrogen gas is injected in a reactor. These gases are decomposed by making a plasma. A plasma with a low degree of ionization (typically 10_5) is usually made in a reactor containing two electrodes driven by a radio-frequency (RF) power source in the megahertz range. Under the right circumstances the radicals, neutrals and ions can react further to produce nanometer sized dust particles. The particles can stick to the surface and thereby contribute to a higher deposition rate. Another possibility is that the nanometer sized particles coagulate and form larger micron sized particles. These particles obtain a high negative charge, due to their large radius and are usually trapped in a radiofrequency plasma. The electric field present in the discharge sheaths causes the entrapment. Such plasmas are called dusty or complex plasmas. In this thesis numerical models are presented which describe dusty plasmas in reactive and nonreactive plasmas. We started first with the development of a simple one-dimensional silane fluid model where a dusty radio-frequency silane/hydrogen discharge is simulated. In the model, discharge quantities like the fluxes, densities and electric field are calculated self-consistently. A radius and an initial density profile for the spherical dust particles are given and the charge and the density of the dust are calculated with an iterative method. During the transport of the dust, its charge is kept constant in time. The dust influences the electric field distribution through its charge and the density of the plasma through recombination of positive ions and electrons at its surface. In the model this process gives an extra production of silane radicals, since the growth of dust is

  6. Analysis and modeling of 3D complex modulus tests on hot and warm bituminous mixtures

    NASA Astrophysics Data System (ADS)

    Pham, Nguyen Hoang; Sauzéat, Cédric; Di Benedetto, Hervé; González-León, Juan A.; Barreto, Gilles; Nicolaï, Aurélia; Jakubowski, Marc

    2015-05-01

    This paper presents the results of laboratory testing of hot and warm bituminous mixtures containing Reclaimed Asphalt Pavement (RAP). Complex modulus measurements, using the tension-compression test on cylindrical specimens, were conducted to determine linear viscoelastic (LVE) behavior. Sinusoidal cyclic loadings, with strain amplitude of approximately 50ṡ10-6, were applied at several temperatures (from -25 to +45 °C) and frequencies (from 0.03 Hz to 10 Hz). In addition to axial stresses and strains, radial strains were also measured. The complex modulus E ∗ and complex Poisson's ratios ν ∗ were then obtained in two perpendicular directions. Measured values in these two directions do not indicate anisotropy on Poisson's ratio. The time-temperature superposition principle (TTSP) was verified with good approximation in one-dimensional (1D) and three-dimensional (3D) conditions for the same values of shift factor. Experimental results were modeled using the 2S2P1D model previously developed at the University of Lyon/ENTPE. In addition, specific analysis showed that eventual damage created during complex modulus test is very small and is equivalent to the effect of an increase of temperature of about 0.25 °C.

  7. Using Interactive 3D PDF for Exploring Complex Biomedical Data: Experiences and Solutions.

    PubMed

    Newe, Axel; Becker, Linda

    2016-01-01

    The Portable Document Format (PDF) is the most commonly used file format for the exchange of electronic documents. A lesser-known feature of PDF is the possibility to embed three-dimensional models and to display these models interactively with a qualified reader. This technology is well suited to present, to explore and to communicate complex biomedical data. This applies in particular for data which would suffer from a loss of information if it was reduced to a static two-dimensional projection. In this article, we present applications of 3D PDF for selected scholarly and clinical use cases in the biomedical domain. Furthermore, we present a sophisticated tool for the generation of respective PDF documents. PMID:27577484

  8. Preparation of Complex DNA Probe Sets for 3D FISH with up to Six Different Fluorochromes.

    PubMed

    Müller, Stefan; Neusser, Michaela; Köhler, Daniela; Cremer, Marion

    2007-01-01

    INTRODUCTIONDNA probes for fluorescence in situ hybridization (FISH) can be generated and labeled by various methods. This protocol describes the conjugation of dUTPs with haptens or fluorochromes, as well as the generation and labeling of DNA probes using those modified dUTPs. Sources of probe DNA include genomic DNA, DNA from flow-sorted chromosomes, bacterial artificial chromosomes (BACs), and cosmids. DNA amplification and labeling procedures involving degenerate oligonucleotide-primed PCR (DOP-PCR) and multiple displacement amplification (MDA) are provided. Advice is given for setting up complex probe pools, such as those containing large pools of BAC probes. Also included is a method for probe precipitation and preparation of a hybridization mix ready to be used for 3D fluorescence in situ hybridization (FISH) experiments. PMID:21357075

  9. A phantom with reduced complexity for spatial 3-D ultrasound calibration.

    PubMed

    Dandekar, Sangita; Li, Yinbo; Molloy, Janelle; Hossack, John

    2005-08-01

    The design of a new phantom for 3-D ultrasound calibration is presented. The phantom provides a viable alternative to existing phantoms that are significantly more complex and require high precision fabrication. The phantom, referred to as a "plane-of-wires" phantom, consists of two wires mounted at the same fixed height above the bottom of a water tank. Data collection for calibration involved rotating and translating the phantom so that the wires remained in a single plane parallel to the tank bottom. The mean reconstruction accuracy of the plane-of-wires calibration is 0.66 mm at a mean depth of 12.3 mm, with a precision of 1.23 mm at the same mean depth. The calibration was used to determine the volume of a cube with known volume with an error of 2.51%. The calibration performance achieved is comparable with that of existing approaches. PMID:16085099

  10. Jovian's plasma torus interaction with Europa: 3D hybrid kinetic simulation

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Cooper, J. F.; Paterson, W. R.

    2009-12-01

    surface of the moon. References [1] Cassidy, T.A., R.E. Johnson, M.A. McGrath, M.C. Wong, J.F. Cooper, The spatial morphology of Europa's near-surface O2 atmosphere, Icarus, 191, 755-764, 2007. [2] Shematovich, V.I., R.E. Johnson, J.F. Cooper, M.C. Wong, Surface-bounded atmosphere of Europa, Icarus, 173, 480-498, 2005. [3] Lipatov, A.S. and M.R. Combi, Effects of kinetic processes in shaping Io's global plasma environment: A 3D hybrid model, Icarus, 180, 412-427, 2006. [4] Kabin, K., et al., On Europa's magnetospheric interaction: A MHD simulation of the E4 Flyby, JGR, 104, 19983-19992, 1999. [5] Paterson, W.R. et al., Galileo plasma observations at Europa: Ion energy spectra and moments, JGR, 104, 22779-22791, 1999.

  11. 3D Inversion of complex resistivity data: Case study on Mineral Exploration Site.

    NASA Astrophysics Data System (ADS)

    Son, Jeong-Sul; Kim, Jung-ho; Park, Sam-gyu; Park, My-Kyung

    2016-04-01

    Complex resistivity (CR) method is a frequency domain induced polarization (IP) method. It is also known as Spectral IP (SIP) method, if wider frequencies are used in data acquisition and interpretation. Although it takes more times than conventional time domain IP method, its data quality is more stable because its data acquisition which measures amplitude and phase is done when the source current is being injected. Our research group has been studying the modeling and inversion algorithms of complex resistivity (CR) method since several years ago and recently applied developed algorithms to various real field application. Due to tough terrain in our country, Profile survey and 2D interpretation were generally used. But to get more precise interpretation, three dimensional modeling and inversion algorithm is required. We developed three dimensional inversion algorithm for this purpose. In the inversion, we adopt the method of adaptive lagraingian multiplier which is automatically set based on the size of error misfit and model regularization norm. It was applied on the real data acquired for mineral exploration sites. CR data was acquired with the Zeta system, manufactured by Zonge Co. In the inversion, only the lower frequency data is used considering its quality and developed 3D inversion algorithm was applied to the acquired data set. Its results were compared to those of time domain IP data conducted at the same site. Resistivity image sections of CR and conventional resistivity method were almost identical. Phase anomalies were well matched with chargeability anomalies and the mining history of the test site. Each anomalies were well discriminated in 3D interpretation than those of 2D. From those experiments, we know that CR method was very effective for the mineral exploration.

  12. Universal lab-on-a-chip platform for complex, perfused 3D cell cultures

    NASA Astrophysics Data System (ADS)

    Sonntag, F.; Schmieder, F.; Ströbel, J.; Grünzner, S.; Busek, M.; Günther, K.; Steege, T.; Polk, C.; Klotzbach, U.

    2016-03-01

    The miniaturization, rapid prototyping and automation of lab-on-a-chip technology play nowadays a very important role. Lab-on-a-chip technology is successfully implemented not only for environmental analysis and medical diagnostics, but also as replacement of animals used for the testing of substances in the pharmaceutical and cosmetics industries. For that purpose the Fraunhofer IWS and partners developed a lab-on-a-chip platform for perfused cell-based assays in the last years, which includes different micropumps, valves, channels, reservoirs and customized cell culture modules. This technology is already implemented for the characterization of different human cell cultures and organoids, like skin, liver, endothelium, hair follicle and nephron. The advanced universal lab-on-a-chip platform for complex, perfused 3D cell cultures is divided into a multilayer basic chip with integrated micropump and application-specific 3D printed cell culture modules. Moreover a technology for surface modification of the printed cell culture modules by laser micro structuring and a complex and flexibly programmable controlling device based on an embedded Linux system was developed. A universal lab-on-a-chip platform with an optional oxygenator and a cell culture module for cubic scaffolds as well as first cell culture experiments within the cell culture device will be presented. The module is designed for direct interaction with robotic dispenser systems. This offers the opportunity to combine direct organ printing of cells and scaffolds with the microfluidic cell culture module. The characterization of the developed system was done by means of Micro-Particle Image Velocimetry (μPIV) and an optical oxygen measuring system.

  13. Curvilinear Immersed Boundary Method for Simulating Fluid Structure Interaction with Complex 3D Rigid Bodies.

    PubMed

    Borazjani, Iman; Ge, Liang; Sotiropoulos, Fotis

    2008-08-10

    The sharp-interface CURVIB approach of Ge and Sotiropoulos [L. Ge, F. Sotiropoulos, A Numerical Method for Solving the 3D Unsteady Incompressible Navier-Stokes Equations in Curvilinear Domains with Complex Immersed Boundaries, Journal of Computational Physics 225 (2007) 1782-1809] is extended to simulate fluid structure interaction (FSI) problems involving complex 3D rigid bodies undergoing large structural displacements. The FSI solver adopts the partitioned FSI solution approach and both loose and strong coupling strategies are implemented. The interfaces between immersed bodies and the fluid are discretized with a Lagrangian grid and tracked with an explicit front-tracking approach. An efficient ray-tracing algorithm is developed to quickly identify the relationship between the background grid and the moving bodies. Numerical experiments are carried out for two FSI problems: vortex induced vibration of elastically mounted cylinders and flow through a bileaflet mechanical heart valve at physiologic conditions. For both cases the computed results are in excellent agreement with benchmark simulations and experimental measurements. The numerical experiments suggest that both the properties of the structure (mass, geometry) and the local flow conditions can play an important role in determining the stability of the FSI algorithm. Under certain conditions unconditionally unstable iteration schemes result even when strong coupling FSI is employed. For such cases, however, combining the strong-coupling iteration with under-relaxation in conjunction with the Aitken's acceleration technique is shown to effectively resolve the stability problems. A theoretical analysis is presented to explain the findings of the numerical experiments. It is shown that the ratio of the added mass to the mass of the structure as well as the sign of the local time rate of change of the force or moment imparted on the structure by the fluid determine the stability and convergence of the FSI

  14. Curvilinear Immersed Boundary Method for Simulating Fluid Structure Interaction with Complex 3D Rigid Bodies

    PubMed Central

    Borazjani, Iman; Ge, Liang; Sotiropoulos, Fotis

    2010-01-01

    The sharp-interface CURVIB approach of Ge and Sotiropoulos [L. Ge, F. Sotiropoulos, A Numerical Method for Solving the 3D Unsteady Incompressible Navier-Stokes Equations in Curvilinear Domains with Complex Immersed Boundaries, Journal of Computational Physics 225 (2007) 1782–1809] is extended to simulate fluid structure interaction (FSI) problems involving complex 3D rigid bodies undergoing large structural displacements. The FSI solver adopts the partitioned FSI solution approach and both loose and strong coupling strategies are implemented. The interfaces between immersed bodies and the fluid are discretized with a Lagrangian grid and tracked with an explicit front-tracking approach. An efficient ray-tracing algorithm is developed to quickly identify the relationship between the background grid and the moving bodies. Numerical experiments are carried out for two FSI problems: vortex induced vibration of elastically mounted cylinders and flow through a bileaflet mechanical heart valve at physiologic conditions. For both cases the computed results are in excellent agreement with benchmark simulations and experimental measurements. The numerical experiments suggest that both the properties of the structure (mass, geometry) and the local flow conditions can play an important role in determining the stability of the FSI algorithm. Under certain conditions unconditionally unstable iteration schemes result even when strong coupling FSI is employed. For such cases, however, combining the strong-coupling iteration with under-relaxation in conjunction with the Aitken’s acceleration technique is shown to effectively resolve the stability problems. A theoretical analysis is presented to explain the findings of the numerical experiments. It is shown that the ratio of the added mass to the mass of the structure as well as the sign of the local time rate of change of the force or moment imparted on the structure by the fluid determine the stability and convergence of the

  15. Inductively Driven, 3D Liner Compression of a Magnetized Plasma to Megabar Energy Densities

    SciTech Connect

    Slough, John

    2015-02-01

    modules. The additional energy and switching capability proposed will thus provide for optimal utilization of the liner energy. The following tasks were outlined for the three year effort: (1) Design and assemble the foil liner compression test structure and chamber including the compression bank and test foils [Year 1]. (2) Perform foil liner compression experiments and obtain performance data over a range on liner dimensions and bank parameters [Year 2]. (3) Carry out compression experiments of the FRC plasma to Megagauss fields and measure key fusion parameters [Year 3]. (4) Develop numerical codes and analyze experimental results, and determine the physics and scaling for future work [Year 1-3]. The principle task of the project was to design and assemble the foil liner FRC formation chamber, the full compression test structure and chamber including the compression bank. This task was completed successfully. The second task was to test foils in the test facility constructed in year one and characterize the performance obtained from liner compression. These experimental measurements were then compared with analytical predictions, and numerical code results. The liner testing was completed and compared with both the analytical results as well as the code work performed with the 3D structural dynamics package of ANSYS Metaphysics®. This code is capable of modeling the dynamic behavior of materials well into the non-linear regime (e.g. a bullet hit plate glass). The liner dynamic behavior was found to be remarkably close to that predicted by the 3D structural dynamics results. Incorporating a code that can also include the magnetics and plasma physics has also made significant progress at the UW. The remaining test bed construction and assembly task is was completed, and the FRC formation and merging experiments were carried out as planned. The liner compression of the FRC to Megagauss fields was not performed due to not obtaining a sufficiently long lived FRC during the

  16. Effects of Na+ and He+ pickup ions on the lunar plasma environment: 3D hybrid modeling

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Cooper, J. F.; Sittler, E. C.; Hartle, R. E.; Sarantos, M.

    2011-12-01

    The hybrid kinetic model used here supports comprehensive simulation of the interaction between different spatial and energetic elements of the moon-solar wind-magnetosphere of the Earth system. There is a set of MHD,kinetic, hybrid, drift kinetic, electrostatic and full kinetic modeling of the lunar plasma environment [1]. However, observations show the existence of several species of the neutrals and pickup ions like Na, He, K, O etc., (see e.g., [2,3,4]). The solar wind parameters are chosen from the ARTEMIS observations [5]. The Na+, He+ lunar exosphere's parameters are chosen from [6,7]. The hybrid kinetic model allows us to take into account the finite gyroradius effects of pickup ions and to correctly estimate the ions velocity distribution and the fluxes along the magnetic field, and on the lunar surface. Modeling shows the formation of the asymmetric Mach cone, the structuring of the pickup ion tails, and presents another type of lunar-solar wind interaction. We will compare the results of our modeling with observed distributions. References [1] Lipatov, A.S., and Cooper, J.F., Hybrid kinetic modeling of the Lunar plasma environment: Past, present and future. In: Lunar Dust, Plasma and Atmosphere: The Next Steps, January 27-29, 2010, Boulder, Colorado, Abstracts/lpa2010.colorado.edu/. [2] Potter, A.E., and Morgan, T.H., Discovery of sodium and potassium vapor in the atmosphere of the Moon, Science, 241, 675-680, doi:10.1126/science.241.4866.675, 1988. [3] Tyler, A.L., et al., Observations of sodium in the tenuous lunar atmosphere, Geophys. Res. Lett., 15(10), 1141-1144, doi:10.1029/GL015i010p01141, 1988. [4] Tanaka, T., et al., First in situ observation of the Moon-originating ions in the Earth's Magnetosphere by MAP-PACE on SELENE (KAGUYA), Geophys. Res. Lett., 36, L22106, doi:10.1029/2009GL040682, 2009. [5] Wiehle, S., et al., First Lunar Wake Passage of ARTEMIS: Discrimination of Wake Effects and Solar Wind Fluctuations by 3D Hybrid Simulations, Planet

  17. An unusual 3D interdigitated architecture assembled from Keggin polyoxometalates and dinuclear copper(II) complexes

    SciTech Connect

    Pang, Haijun; Yang, Ming; Kang, Lu; Ma, Huiyuan; Liu, Bo; Li, Shaobin; Liu, Heng

    2013-02-15

    A novel organic-inorganic hybrid compound, [Cu{sub 2}(bipy){sub 3}({mu}{sub 1}-H{sub 2}O){sub 2}({mu}{sub 2}-H{sub 2}O)({mu}{sub 2}-OH)(H{sub 2}BW{sub 12}O{sub 40})]{center_dot}4 H{sub 2}O (1) (bipy=4,4 Prime -bipy), has been synthesized in hydrothermal condition and characterized by elemental analysis, IR spectrum, TG analysis and single-crystal X-ray diffraction. Compound 1 possesses poly-pendant layered motifs composed of 12-tungstoborates and dinuclear copper(II) complexes, in which the mono-coordinated bipy molecules are orderly appended to both sides of the layer, respectively. Adjacent layers mutually engage in a zipper-like pattern to result in a novel 3D interdigitated architecture. The variable-temperature magnetic susceptibility of 1 showed that there existed weak antiferromagnetic interaction in 1. Toward the reduction of hydrogen peroxide, 1 has good electrocatalytic activity and remarkable stability. - A new compound has been obtained, which represents the first interdigitated architecture assembled by POMs and dinuclear copper(II) complexes. Highlights: Black-Right-Pointing-Pointer The first example of interdigitated architecture assembled by POMs and dinuclear copper(II) complexes is observed. Black-Right-Pointing-Pointer A zipper-like pattern is observed in the structure. Black-Right-Pointing-Pointer The IR, TG, XRPD, magnetism and electrochemical property of the title compound were studied.

  18. 3D Visualization of "Frozen" Dynamic Magma Chambers in the Duluth Complex, Northeastern Minnesota

    NASA Astrophysics Data System (ADS)

    Peterson, D. M.; Hauck, S. A.

    2005-12-01

    The Mesoproterozoic Duluth Complex and associated intrusions of the Midcontinent Rift in northeastern Minnesota constitute one of the largest, semi-continuous, mafic intrusive complexes in the world, second only to the Bushveld Complex of South Africa. These rocks cover an arcuate area of over 5,000 square kilometers and give rise to two strong gravity anomalies (+50 & +70 mgal) that imply intrusive roots to more than 13 km depth. The geometry of three large mafic intrusions within the Duluth Complex have been modeled by the integration of field mapping and drill hole data with maps of gravity and magnetic anomalies. The igneous bodies include the South Kawishiwi, Partridge River, and Bald Eagle intrusions that collectively outcrop over an area of > 800 square kilometers. The South Kawishiwi and Partridge River intrusions host several billion tons of low-grade Cu-Ni-PGE mineralization near their base, while the geophysical expressions of the Bald Eagle intrusion have the same shape and dimensions as the "bulls eye" pattern of low velocity seismic reflection anomalies along the East Pacific Rise. These anomalies are interpreted to define regions of melt concentrations, i.e., active magma chambers. This suggests that the funnel-shaped Bald Eagle intrusion could be an example of a "frozen" dynamic magma chamber. In support of this analogy we note that the magmatic systems of intracontinental rifts, mid-ocean ridges, extensional regimes in back-arc environments, and ophiolites have a common characteristic: the emplacement of magma in extensional environments, and the common products in all four are varieties of layered intrusions, dikes and sills, and overlying volcanic rocks. 3D visualization of these intrusions is integral to the understanding of the Duluth Complex magmatic system and associated mineralization, and can be used as a proxy for study of similar systems, such as the Antarctic Ferrar dolerites, worldwide.

  19. Laser-plasma interaction in ignition relevant plasmas: benchmarking our 3D modelling capabilities versus recent experiments

    SciTech Connect

    Divol, L; Froula, D H; Meezan, N; Berger, R; London, R A; Michel, P; Glenzer, S H

    2007-09-27

    We have developed a new target platform to study Laser Plasma Interaction in ignition-relevant condition at the Omega laser facility (LLE/Rochester)[1]. By shooting an interaction beam along the axis of a gas-filled hohlraum heated by up to 17 kJ of heater beam energy, we were able to create a millimeter-scale underdense uniform plasma at electron temperatures above 3 keV. Extensive Thomson scattering measurements allowed us to benchmark our hydrodynamic simulations performed with HYDRA [1]. As a result of this effort, we can use with much confidence these simulations as input parameters for our LPI simulation code pF3d [2]. In this paper, we show that by using accurate hydrodynamic profiles and full three-dimensional simulations including a realistic modeling of the laser intensity pattern generated by various smoothing options, fluid LPI theory reproduces the SBS thresholds and absolute reflectivity values and the absence of measurable SRS. This good agreement was made possible by the recent increase in computing power routinely available for such simulations.

  20. 3D Topography of the Young Adult Anal Sphincter Complex Reconstructed from Undeformed Serial Anatomical Sections

    PubMed Central

    Wu, Yi; Dabhoiwala, Noshir F.; Hagoort, Jaco; Shan, Jin-Lu; Tan, Li-Wen; Fang, Bin-Ji; Zhang, Shao-Xiang; Lamers, Wouter H.

    2015-01-01

    Background Pelvic-floor anatomy is usually studied by artifact-prone dissection or imaging, which requires prior anatomical knowledge. We used the serial-section approach to settle contentious issues and an interactive 3D-pdf to make the results widely accessible. Method 3D reconstructions of undeformed thin serial anatomical sections of 4 females and 2 males (21–35y) of the Chinese Visible Human database. Findings Based on tendinous septa and muscle-fiber orientation as segmentation guides, the anal-sphincter complex (ASC) comprised the subcutaneous external anal sphincter (EAS) and the U-shaped puborectal muscle, a part of the levator ani muscle (LAM). The anococcygeal ligament fixed the EAS to the coccygeal bone. The puborectal-muscle loops, which define the levator hiatus, passed around the anorectal junction and inserted anteriorly on the perineal body and pubic bone. The LAM had a common anterior attachment to the pubic bone, but separated posteriorly into puborectal and “pubovisceral” muscles. This pubovisceral muscle was bilayered: its internal layer attached to the conjoint longitudinal muscle of the rectum and the rectococcygeal fascia, while its outer, patchy layer reinforced the inner layer. ASC contraction makes the ano-rectal bend more acute and lifts the pelvic floor. Extensions of the rectal longitudinal smooth muscle to the coccygeal bone (rectococcygeal muscle), perineal body (rectoperineal muscle), and endopelvic fascia (conjoint longitudinal and pubovisceral muscles) formed a “diaphragm” at the inferior boundary of the mesorectum that suspended the anorectal junction. Its contraction should straighten the anorectal bend. Conclusion The serial-section approach settled contentious topographic issues of the pelvic floor. We propose that the ASC is involved in continence and the rectal diaphragm in defecation. PMID:26305117

  1. Experimental and Numerical Investigation of Forging Process to Reproduce a 3D Aluminium Foam Complex Shape

    NASA Astrophysics Data System (ADS)

    Filice, Luigino; Gagliardi, Francesco; Shivpuri, Rajiv; Umbrello, Domenico

    2007-05-01

    Metallic foams represent one of the most exciting materials introduced in the manufacturing scenario in the last years. In the study here addressed, the experimental and numerical investigations on the forging process of a simple foam billet shaped into complex sculptured parts were carried out. In particular, the deformation behavior of metallic foams and the development of density gradients were investigated through a series of experimental forging tests in order to produce a selected portion of a hip prosthesis. The human bone replacement was chosen as case study due to its industrial demand and for its particular 3D complex shape. A finite element code (Deform 3D®) was utilized for modeling the foam behavior during the forging process and an accurate material rheology description was used based on a porous material model which includes the measured local density. Once the effectiveness of the utilized Finite Element model was verified through the comparison with the experimental evidences, a numerical study of the influence of the foam density was investigated. The obtained numerical results shown as the initial billet density plays an important role on the prediction of the final shape, the optimization of the flash as well as the estimation of the punch load.

  2. Characterization, fabrication, and analysis of soft dielectric elastomer actuators capable of complex 3D deformation

    NASA Astrophysics Data System (ADS)

    Lai, William

    Inspired by nature, the development of soft actuators has drawn large attention to provide higher flexibility and allow adaptation to more complex environment. This thesis is focused on utilizing electroactive polymers as active materials to develop soft planar dielectric elastomer actuators capable of complex 3D deformation. The potential applications of such soft actuators are in flexible robotic arms and grippers, morphing structures and flapping wings for micro aerial vehicles. The embraces design for a freestanding actuator utilizes the constrained deformation imposed by surface stiffeners on an electroactive membrane to avert the requirement of membrane pre-stretch and the supporting frames. The proposed design increases the overall actuator flexibility and degrees-of-freedom. Actuator design, fabrication, and performance are presented for different arrangement of stiffeners. Digital images correlation technique were utilized to evaluate the in-plane finite strain components, in order to elucidate the role of the stiffeners in controlling the three dimensional deformation. It was found that a key controlling factor was the localized deformation near the stiffeners, while the rest of the membrane would follow through. A detailed finite element modeling framework was developed with a user-material subroutine, built into the ABAQUS commercial finite element package. An experimentally calibrated Neo-Hookean based material model that coupled the applied electrical field to the actuator mechanical deformation was employed. The numerical model was used to optimize different geometrical features, electrode layup and stacking sequence of actuators. It was found that by splitting the stiffeners into finer segments, the force-stroke characteristics of actuator were able to be adjusted with stiffener configuration, while keeping the overall bending stiffness. The efficacy of actuators could also be greatly improved by increasing the stiffener periodicity. The developed

  3. Development of a GPU-Accelerated 3-D Full-Wave Code for Electromagnetic Wave Propagation in a Cold Plasma

    NASA Astrophysics Data System (ADS)

    Woodbury, D.; Kubota, S.; Johnson, I.

    2014-10-01

    Computer simulations of electromagnetic wave propagation in magnetized plasmas are an important tool for both plasma heating and diagnostics. For active millimeter-wave and microwave diagnostics, accurately modeling the evolution of the beam parameters for launched, reflected or scattered waves in a toroidal plasma requires that calculations be done using the full 3-D geometry. Previously, we reported on the application of GPGPU (General-Purpose computing on Graphics Processing Units) to a 3-D vacuum Maxwell code using the FDTD (Finite-Difference Time-Domain) method. Tests were done for Gaussian beam propagation with a hard source antenna, utilizing the parallel processing capabilities of the NVIDIA K20M. In the current study, we have modified the 3-D code to include a soft source antenna and an induced current density based on the cold plasma approximation. Results from Gaussian beam propagation in an inhomogeneous anisotropic plasma, along with comparisons to ray- and beam-tracing calculations will be presented. Additional enhancements, such as advanced coding techniques for improved speedup, will also be investigated. Supported by U.S. DoE Grant DE-FG02-99-ER54527 and in part by the U.S. DoE, Office of Science, WDTS under the Science Undergraduate Laboratory Internship program.

  4. Study of plasma meniscus formation and beam halo in negative ion source using the 3D3VPIC model

    SciTech Connect

    Nishioka, S.; Goto, I.; Hatayama, A.; Miyamoto, K.; Fukano, A.

    2015-04-08

    In this paper, the effect of the electron confinement time on the plasma meniscus and the fraction of the beam halo is investigated by 3D3V-PIC (three dimension in real space and three dimension in velocity space) (Particle in Cell) simulation in the extraction region of negative ion source. The electron confinement time depends on the characteristic time of electron escape along the magnetic field as well as the characteristic time of diffusion across the magnetic field. Our 3D3V-PIC results support the previous result by 2D3V-PIC results i.e., it is confirmed that the penetration of the plasma meniscus becomes deep into the source plasma region when the effective confinement time is short.

  5. 2D and 3D reconstruction and geomechanical characterization of kilometre-scale complex folded structures

    NASA Astrophysics Data System (ADS)

    Zanchi, Andrea; Agliardi, Federico; Crosta, Giovanni B.; Villa, Alberto; Bistacchi, Andrea; Iudica, Gaetano

    2015-04-01

    points based on their normal vector orientations to identify and map bedding and fractures. Combined stereographic analysis of bedding orientations and use of filters allowed the quantification of fold hinge and limb geometries and their 3D reconstruction in GOCAD. Fracture patterns derived from points clouds and field data allowed identifying different geomechanical domains associated to the folded structure. Our results encourage the integrated analysis of high-resolution point clouds and detailed structural and geomechanical field data as inputs to the 3D geometrical reconstruction and modelling of folded rock masses. Validation of virtual outcrop reconstructions through a comparison with field structural measurements suggests that very precise geometrical constraints can be obtained by TLS on geological bodies with complex geometrical features. However, additional constraints on TLS survey layout design are required to optimise the reconstruction and distinction of specific structural elements associated to folding as bedding and fold-related fracture systems.

  6. Pneumococcal polysaccharides complexed with C3d bind to human B lymphocytes via complement receptor type 2.

    PubMed Central

    Griffioen, A W; Rijkers, G T; Janssens-Korpela, P; Zegers, B J

    1991-01-01

    The immunoregulatory function of the complement system has been the focus of many investigations. In particular, fragments of complement factor C3 have been shown to play a role in B-lymphocyte activation and proliferation, lymphokine production, and the generation of in vitro antibody production. Purified pneumococcal polysaccharides (PS) can induce direct activation of C3 via the alternative pathway. Using sera of C1q-deficient patients and healthy subjects, we demonstrated that C3d, a split product of C3 that is generated after degradation of iC3b, can be bound to PS antigens. The binding of C3d to PS can occur in the absence of specific antibodies. Subsequently, we showed that PS complexed with C3d can be recognized by complement receptor type 2 that is expressed on B cells. Treatment of B cells with a monoclonal antibody recognizing the C3d-binding site of complement receptor type 2 reduces the binding of PS-C3d to the cells. In addition, we showed that PS4 complexed with C3d exerted an increased immunogenicity compared with free PS4. Our results show that the complement system plays a role in the activation of PS-specific B cells, carrying membrane receptors for C3d. Consequently, the complement system plays a regulatory role in the antibody response to T-cell-independent type 2 antigens such as PS. PMID:1826897

  7. Experiments on Cryogenic Complex Plasma

    SciTech Connect

    Ishihara, O.; Sekine, W.; Kubota, J.; Uotani, N.; Chikasue, M.; Shindo, M.

    2009-11-10

    Experiments on a cryogenic complex plasma have been performed. Preliminary experiments include production of a plasma in a liquid helium or in a cryogenic helium gas by a pulsed discharge. The extended production of a plasma has been realized in a vapor of liquid helium or in a cryogenic helium gas by rf discharge. The charge of dust particles injected in such a plasma has been studied in detail.

  8. 3D allows easier ID of complex contamination at weapons site

    SciTech Connect

    Rychkun, E.

    1996-02-01

    The Aberdeen Proving Ground in Maryland has operated since 1917, providing conventional and chemical-agent weapons testing, research and production services for the US defense program. Two areas, Englewood and Aberdeen, cover 73,000 acres in Harford and Baltimore Counties. Here, more than 300 disposal sites were used to bury munitions, unexploded ordnance, chemical and radioactive products, solvents, pesticides and fuel materials. Officials suspect that the groundwater and soils at the site are contaminated, but the degree to which is unknown. Risk of exposure at the surface appears to be the greatest problem for site personnel. A modeling technology designed by Lynx Geosystems Inc. (Vancouver, B.C.) was chosen to characterize the subsurface. The technology is designed specifically to deal with such difficult spatial problems. The program integrates spatial data management, geostatistical techniques, three-dimensional modeling, volumetrics, engineering and 3D visualization in one facility. Thus, using methods to maximize data utility, it becomes possible to use established analytical techniques to create detailed representations of highly complex subsurface problems. The program also provides engineers with the ability to measure the degree of contaminant characterization and sampling uncertainty. In addition, complete soil-geology and saturated/unsaturated zone models would be used to define local influences on contaminant migration. These would form critical input for developing remediation volumes on the basis of pre-defined uncertainty criteria.

  9. General application of rapid 3-D digitizing and tool path generation for complex shapes

    SciTech Connect

    Kwok, K.S.; Loucks, C.S.; Driessen, B.J.

    1997-09-01

    A system for automatic tool path generation was developed at Sandia National Laboratories for finish machining operations. The system consists of a commercially available 5-axis milling machine controlled by Sandia developed software. This system was used to remove overspray on cast turbine blades. A laser-based, structured-light sensor, mounted on a tool holder, is used to collect 3D data points around the surface of the turbine blade. Using the digitized model of the blade, a tool path is generated which will drive a 0.375 inch grinding pin around the tip of the blade. A fuzzified digital filter was developed to properly eliminate false sensor readings caused by burrs, holes and overspray. The digital filter was found to successfully generate the correct tool path for a blade with intentionally scanned holes and defects. The fuzzified filter improved the computation efficiency by a factor of 25. For application to general parts, an adaptive scanning algorithm was developed and presented with simulation and experimental results. A right pyramid and an ellipsoid were scanned successfully with the adaptive algorithm in simulation studies. In actual experiments, a nose cone and a turbine blade were successfully scanned. A complex shaped turbine blade was successfully scanned and finished machined using these algorithms.

  10. 3D seismic data reconstruction based on complex-valued curvelet transform in frequency domain

    NASA Astrophysics Data System (ADS)

    Zhang, Hua; Chen, Xiaohong; Li, Hongxing

    2015-02-01

    Traditional seismic data sampling must follow the Nyquist Sampling Theorem. However, the field data acquisition may not meet the sampling criteria due to missing traces or limits in exploration cost, causing a prestack data reconstruction problem. Recently researchers have proposed many useful methods to regularize the seismic data. In this paper, a 3D seismic data reconstruction method based on the Projections Onto Convex Sets (POCS) algorithm and a complex-valued curvelet transform (CCT) has been introduced in the frequency domain. In order to improve reconstruction efficiency and reduce the computation time, the seismic data are transformed from the t-x-y domain to the f-x-y domain and the data reconstruction is processed for every frequency slice during the reconstruction process. The selection threshold parameter is important for reconstruction efficiency for each iteration, therefore an exponential square root decreased (ESRD) threshold is proposed. The experimental results show that the ESRD threshold can greatly reduce iterations and improve reconstruction efficiency compared to the other thresholds for the same reconstruction result. We also analyze the antinoise ability of the CCT-based POCS reconstruction method. The example studies on synthetic and real marine seismic data showed that our proposed method is more efficient and applicable.

  11. Accurate 3D reconstruction of complex blood vessel geometries from intravascular ultrasound images: in vitro study.

    PubMed

    Subramanian, K R; Thubrikar, M J; Fowler, B; Mostafavi, M T; Funk, M W

    2000-01-01

    We present a technique that accurately reconstructs complex three dimensional blood vessel geometry from 2D intravascular ultrasound (IVUS) images. Biplane x-ray fluoroscopy is used to image the ultrasound catheter tip at a few key points along its path as the catheter is pulled through the blood vessel. An interpolating spline describes the continuous catheter path. The IVUS images are located orthogonal to the path, resulting in a non-uniform structured scalar volume of echo densities. Isocontour surfaces are used to view the vessel geometry, while transparency and clipping enable interactive exploration of interior structures. The two geometries studied are a bovine artery vascular graft having U-shape and a constriction, and a canine carotid artery having multiple branches and a constriction. Accuracy of the reconstructions is established by comparing the reconstructions to (1) silicone moulds of the vessel interior, (2) biplane x-ray images, and (3) the original echo images. Excellent shape and geometry correspondence was observed in both geometries. Quantitative measurements made at key locations of the 3D reconstructions also were in good agreement with those made in silicone moulds. The proposed technique is easily adoptable in clinical practice, since it uses x-rays with minimal exposure and existing IVUS technology. PMID:11105284

  12. 3D Plasma Equilibrium and Stability with Hot Particle Anisotropic Pressure

    SciTech Connect

    Cooper, W. A.; Graves, J. P.; Hirshman, S. P.; Merkel, P.; Kisslinger, J.; Wobig, H. F. G.; Watanabe, K. Y.; Narushima, Y.

    2008-11-01

    The anisotropic pressure free-boundary three-dimsnsional (3D) equilibrium code ANI-MEC with nested magnetic flux surfaces has been developed as an extension of the VMEC2000 code. The preconditioning algorithm included is exploited to allow the computation of equilibrium states with radial force balance error improvements exceeding 4 orders of magnitude compared with the non-conditioned results. Large off-axis energetic particle deposition has been applied in a 2-field period quasiaxisymmetric stellarator reactor at <{beta}>{approx_equal}4.5% to test the limitations of the code. The hot particle pressures are roughly uniform around the flux surfaces when p{sub parallel}>p{sub perpendicular}. The fast particle perpendicular pressures localise in the region of deposition for p{sub perpendicular}>p{sub parallel}, while the energetic particle parallel pressures concentrate on the low-field side. Two anisotropic pressure models for global fluid stability implemented in the TERPSICHORE code have been applied to the LHD Heliotron for a sequence of equilibria with fixed <{beta}{sub dia}>{approx_equal}5%(<{beta}{sub th}>{approx_equal}3.5%) varying the fast particle temperature ratio T{sub parallel}/T{sub perpendicular}. Global magnetohydrodynamic modes are quasi-stable according to the model with rigid hot particle layers, while they become stabilised according to the fully interacting energetic particle model with increasing T{sub parallel}/T{sub perpendicular}. As T{sub parallel}/T{sub perpendicular} approaches 3, however, the n = 1 mode family becomes unstable. A transition from a nearly stable quasi-external ballooning-interchange structure to a weakly unstable internal kink mode takes place. The investigation of beam-driven fusion in a Heliotron system is broached. A background plasma with cold ions and warm electrons at <{beta}{sub ith}>{approx_equal}1% is examined with fixed T{sub parallel}/T{sub perpendicular} = 10 in which the hot particle contribution to <{beta

  13. Electrical resistivity tomography applied to a complex lava dome: 2D and 3D models comparison

    NASA Astrophysics Data System (ADS)

    Portal, Angélie; Fargier, Yannick; Lénat, Jean-François; Labazuy, Philippe

    2015-04-01

    interpretation. Geometry and location of ERT profiles on the Puy de Dôme volcano allow to compute 3D inversion models of the electrical resistivity distribution with a new inversion code. This code uses tetrahedrons to discretize the 3D model and uses also a conventional Gauss-Newton inversion scheme combined to an Occam regularisation to process the data. It allows to take into account all the data information and prevents the construction of 3D artefacts present in conventional 2D inversion results. Inversion results show a strong electrical resistivity heterogeneity of the entire dome. Underlying volcanic edifices are clearly identified below the lava dome. Generally speaking, the flanks of the volcano show high resistivity values, and the summit part is more conductive but also very heterogeneous.

  14. 3D and 4D magnetic susceptibility tomography based on complex MR images

    DOEpatents

    Chen, Zikuan; Calhoun, Vince D

    2014-11-11

    Magnetic susceptibility is the physical property for T2*-weighted magnetic resonance imaging (T2*MRI). The invention relates to methods for reconstructing an internal distribution (3D map) of magnetic susceptibility values, .chi. (x,y,z), of an object, from 3D T2*MRI phase images, by using Computed Inverse Magnetic Resonance Imaging (CIMRI) tomography. The CIMRI technique solves the inverse problem of the 3D convolution by executing a 3D Total Variation (TV) regularized iterative convolution scheme, using a split Bregman iteration algorithm. The reconstruction of .chi. (x,y,z) can be designed for low-pass, band-pass, and high-pass features by using a convolution kernel that is modified from the standard dipole kernel. Multiple reconstructions can be implemented in parallel, and averaging the reconstructions can suppress noise. 4D dynamic magnetic susceptibility tomography can be implemented by reconstructing a 3D susceptibility volume from a 3D phase volume by performing 3D CIMRI magnetic susceptibility tomography at each snapshot time.

  15. Capturing tumor complexity in vitro: Comparative analysis of 2D and 3D tumor models for drug discovery.

    PubMed

    Stock, Kristin; Estrada, Marta F; Vidic, Suzana; Gjerde, Kjersti; Rudisch, Albin; Santo, Vítor E; Barbier, Michaël; Blom, Sami; Arundkar, Sharath C; Selvam, Irwin; Osswald, Annika; Stein, Yan; Gruenewald, Sylvia; Brito, Catarina; van Weerden, Wytske; Rotter, Varda; Boghaert, Erwin; Oren, Moshe; Sommergruber, Wolfgang; Chong, Yolanda; de Hoogt, Ronald; Graeser, Ralph

    2016-01-01

    Two-dimensional (2D) cell cultures growing on plastic do not recapitulate the three dimensional (3D) architecture and complexity of human tumors. More representative models are required for drug discovery and validation. Here, 2D culture and 3D mono- and stromal co-culture models of increasing complexity have been established and cross-comparisons made using three standard cell carcinoma lines: MCF7, LNCaP, NCI-H1437. Fluorescence-based growth curves, 3D image analysis, immunohistochemistry and treatment responses showed that end points differed according to cell type, stromal co-culture and culture format. The adaptable methodologies described here should guide the choice of appropriate simple and complex in vitro models. PMID:27364600

  16. Direct fabrication of complex 3D hierarchical nanostructures by reactive ion etching of hollow sphere colloidal crystals.

    PubMed

    Zhong, Kuo; Li, Jiaqi; Van Cleuvenbergen, Stijn; Clays, Koen

    2016-09-21

    Direct reactive ion etching (RIE) of hollow SiO2 sphere colloidal crystals (HSCCs) is employed as a facile, low-cost method to fabricate complex three-dimensional (3D) hierarchical nanostructures. These multilayered structures are gradually transformed into nanostructures of increasing complexity by controlling the etching time, without complicated procedures (no mask needed). The resulting 3D topologies are unique, and cannot be obtained through traditional approaches. The formation mechanism of these structures is explained in detail by geometrical modeling during the different etching stages, through shadow effects of the higher layers. SEM images confirm the modeled morphological changes. The nanostructures obtained by our approach show very fine features as small as ∼30 nm. Our approach opens new avenues to directly obtain complex 3D nanostructures from colloidal crystals and can find applications in sensing, templating, and catalysis where fine tuning the specific surface might be critical. PMID:27545098

  17. Capturing tumor complexity in vitro: Comparative analysis of 2D and 3D tumor models for drug discovery

    PubMed Central

    Stock, Kristin; Estrada, Marta F.; Vidic, Suzana; Gjerde, Kjersti; Rudisch, Albin; Santo, Vítor E.; Barbier, Michaël; Blom, Sami; Arundkar, Sharath C.; Selvam, Irwin; Osswald, Annika; Stein, Yan; Gruenewald, Sylvia; Brito, Catarina; van Weerden, Wytske; Rotter, Varda; Boghaert, Erwin; Oren, Moshe; Sommergruber, Wolfgang; Chong, Yolanda; de Hoogt, Ronald; Graeser, Ralph

    2016-01-01

    Two-dimensional (2D) cell cultures growing on plastic do not recapitulate the three dimensional (3D) architecture and complexity of human tumors. More representative models are required for drug discovery and validation. Here, 2D culture and 3D mono- and stromal co-culture models of increasing complexity have been established and cross-comparisons made using three standard cell carcinoma lines: MCF7, LNCaP, NCI-H1437. Fluorescence-based growth curves, 3D image analysis, immunohistochemistry and treatment responses showed that end points differed according to cell type, stromal co-culture and culture format. The adaptable methodologies described here should guide the choice of appropriate simple and complex in vitro models. PMID:27364600

  18. 2D fluid model analysis for the effect of 3D gas flow on a capacitively coupled plasma deposition reactor

    NASA Astrophysics Data System (ADS)

    Kim, Ho Jun; Lee, Hae June

    2016-06-01

    The wide applicability of capacitively coupled plasma (CCP) deposition has increased the interest in developing comprehensive numerical models, but CCP imposes a tremendous computational cost when conducting a transient analysis in a three-dimensional (3D) model which reflects the real geometry of reactors. In particular, the detailed flow features of reactive gases induced by 3D geometric effects need to be considered for the precise calculation of radical distribution of reactive species. Thus, an alternative inclusive method for the numerical simulation of CCP deposition is proposed to simulate a two-dimensional (2D) CCP model based on the 3D gas flow results by simulating flow, temperature, and species fields in a 3D space at first without calculating the plasma chemistry. A numerical study of a cylindrical showerhead-electrode CCP reactor was conducted for particular cases of SiH4/NH3/N2/He gas mixture to deposit a hydrogenated silicon nitride (SiN x H y ) film. The proposed methodology produces numerical results for a 300 mm wafer deposition reactor which agree very well with the deposition rate profile measured experimentally along the wafer radius.

  19. The 3D geometry of regional-scale dolerite saucer complexes and their feeders in the Secunda Complex, Karoo Basin

    NASA Astrophysics Data System (ADS)

    Coetzee, André; Kisters, Alexander

    2016-05-01

    Dolerites in the Karoo Basin of South Africa commonly represent kilometre-scale, interconnected saucer-shaped structures that consist of inner sills, bounded by inclined sheets connected to stratigraphically higher outer sills. Based on information from over 3000 boreholes and mining operations extending over an area of ca. 500 km2 and covering a > 3 km vertical section from Karoo strata into underlying basement rocks, this paper presents the results of a 3D modelling exercise that describes the geometry and spatial relationships of a regional-scale saucer complex, locally referred to as the number 8 sill, from the Secunda (coal mine) Complex in the northern parts of the Karoo Basin. The composite number 8 sill complex consists of three main dolerite saucers (dolerites A to C). These dolerite saucers are hosted by the Karoo Supergroup and the connectivity and geometry of the saucers support a lateral, sill-feeding-sill relationship between dolerite saucers A, B and C. The saucers are underlain and fed by a shallowly-dipping sheet (dolerite D) in the basement rocks below the Karoo sequence. The 3D geometric strata model agrees well with experimental results of saucer formation from underlying feeders in sedimentary basins, but demonstrates a more intricate relationship where a single feeder can give rise to several split level saucers in one regionally extensive saucer complex. More localised dome- or ridge-shape protrusions are common in the flat lying sill parts of the regional-scale saucers. We suggest a mode of emplacement for these kilometre-scale dome- and ridge structures having formed as a result of lobate magma flow processes. Magma lobes, propagating in different directions ahead of the main magma sheet, undergo successive episodes of lobe arrest and inflation. The inflation of lobes initiates failure of the overlying strata and the formation of curved faults. Magma exploiting these faults transgresses the stratigraphy and coalesces to form a ring

  20. 3D Printing of Highly Stretchable and Tough Hydrogels into Complex, Cellularized Structures.

    PubMed

    Hong, Sungmin; Sycks, Dalton; Chan, Hon Fai; Lin, Shaoting; Lopez, Gabriel P; Guilak, Farshid; Leong, Kam W; Zhao, Xuanhe

    2015-07-15

    A 3D printable and highly stretchable tough hydrogel is developed by combining poly(ethylene glycol) and sodium alginate, which synergize to form a hydrogel tougher than natural cartilage. Encapsulated cells maintain high viability over a 7 d culture period and are highly deformed together with the hydrogel. By adding biocompatible nanoclay, the tough hydrogel is 3D printed in various shapes without requiring support material. PMID:26033288

  1. Dynamic earthquake rupture simulations on nonplanar faults embedded in 3D geometrically complex, heterogeneous elastic solids

    NASA Astrophysics Data System (ADS)

    Duru, Kenneth; Dunham, Eric M.

    2016-01-01

    Dynamic propagation of shear ruptures on a frictional interface in an elastic solid is a useful idealization of natural earthquakes. The conditions relating discontinuities in particle velocities across fault zones and tractions acting on the fault are often expressed as nonlinear friction laws. The corresponding initial boundary value problems are both numerically and computationally challenging. In addition, seismic waves generated by earthquake ruptures must be propagated for many wavelengths away from the fault. Therefore, reliable and efficient numerical simulations require both provably stable and high order accurate numerical methods. We present a high order accurate finite difference method for: a) enforcing nonlinear friction laws, in a consistent and provably stable manner, suitable for efficient explicit time integration; b) dynamic propagation of earthquake ruptures along nonplanar faults; and c) accurate propagation of seismic waves in heterogeneous media with free surface topography. We solve the first order form of the 3D elastic wave equation on a boundary-conforming curvilinear mesh, in terms of particle velocities and stresses that are collocated in space and time, using summation-by-parts (SBP) finite difference operators in space. Boundary and interface conditions are imposed weakly using penalties. By deriving semi-discrete energy estimates analogous to the continuous energy estimates we prove numerical stability. The finite difference stencils used in this paper are sixth order accurate in the interior and third order accurate close to the boundaries. However, the method is applicable to any spatial operator with a diagonal norm satisfying the SBP property. Time stepping is performed with a 4th order accurate explicit low storage Runge-Kutta scheme, thus yielding a globally fourth order accurate method in both space and time. We show numerical simulations on band limited self-similar fractal faults revealing the complexity of rupture dynamics

  2. Dynamic earthquake rupture simulation on nonplanar faults embedded in 3D geometrically complex, heterogeneous Earth models

    NASA Astrophysics Data System (ADS)

    Duru, K.; Dunham, E. M.; Bydlon, S. A.; Radhakrishnan, H.

    2014-12-01

    Dynamic propagation of shear ruptures on a frictional interface is a useful idealization of a natural earthquake.The conditions relating slip rate and fault shear strength are often expressed as nonlinear friction laws.The corresponding initial boundary value problems are both numerically and computationally challenging.In addition, seismic waves generated by earthquake ruptures must be propagated, far away from fault zones, to seismic stations and remote areas.Therefore, reliable and efficient numerical simulations require both provably stable and high order accurate numerical methods.We present a numerical method for:a) enforcing nonlinear friction laws, in a consistent and provably stable manner, suitable for efficient explicit time integration;b) dynamic propagation of earthquake ruptures along rough faults; c) accurate propagation of seismic waves in heterogeneous media with free surface topography.We solve the first order form of the 3D elastic wave equation on a boundary-conforming curvilinear mesh, in terms of particle velocities and stresses that are collocated in space and time, using summation-by-parts finite differences in space. The finite difference stencils are 6th order accurate in the interior and 3rd order accurate close to the boundaries. Boundary and interface conditions are imposed weakly using penalties. By deriving semi-discrete energy estimates analogous to the continuous energy estimates we prove numerical stability. Time stepping is performed with a 4th order accurate explicit low storage Runge-Kutta scheme. We have performed extensive numerical experiments using a slip-weakening friction law on non-planar faults, including recent SCEC benchmark problems. We also show simulations on fractal faults revealing the complexity of rupture dynamics on rough faults. We are presently extending our method to rate-and-state friction laws and off-fault plasticity.

  3. 3D imaging and quantitative analysis of small solubilized membrane proteins and their complexes by transmission electron microscopy

    PubMed Central

    Vahedi-Faridi, Ardeschir; Jastrzebska, Beata; Palczewski, Krzysztof; Engel, Andreas

    2013-01-01

    Inherently unstable, detergent-solubilized membrane protein complexes can often not be crystallized. For complexes that have a mass of >300 kDa, cryo-electron microscopy (EM) allows their three-dimensional (3D) structure to be assessed to a resolution that makes secondary structure elements visible in the best case. However, many interesting complexes exist whose mass is below 300 kDa and thus need alternative approaches. Two methods are reviewed: (i) Mass measurement in a scanning transmission electron microscope, which has provided important information on the stoichiometry of membrane protein complexes. This technique is applicable to particulate, filamentous and sheet-like structures. (ii) 3D-EM of negatively stained samples, which determines the molecular envelope of small membrane protein complexes. Staining and dehydration artifacts may corrupt the quality of the 3D map. Staining conditions thus need to be optimized. 3D maps of plant aquaporin SoPIP2;1 tetramers solubilized in different detergents illustrate that the flattening artifact can be partially prevented and that the detergent itself contributes significantly. Another example discussed is the complex of G protein-coupled receptor rhodopsin with its cognate G protein transducin. PMID:23267047

  4. Direct fabrication of 3D graphene on nanoporous anodic alumina by plasma-enhanced chemical vapor deposition

    NASA Astrophysics Data System (ADS)

    Zhan, Hualin; Garrett, David J.; Apollo, Nicholas V.; Ganesan, Kumaravelu; Lau, Desmond; Prawer, Steven; Cervenka, Jiri

    2016-01-01

    High surface area electrode materials are of interest for a wide range of potential applications such as super-capacitors and electrochemical cells. This paper describes a fabrication method of three-dimensional (3D) graphene conformally coated on nanoporous insulating substrate with uniform nanopore size. 3D graphene films were formed by controlled graphitization of diamond-like amorphous carbon precursor films, deposited by plasma-enhanced chemical vapour deposition (PECVD). Plasma-assisted graphitization was found to produce better quality graphene than a simple thermal graphitization process. The resulting 3D graphene/amorphous carbon/alumina structure has a very high surface area, good electrical conductivity and exhibits excellent chemically stability, providing a good material platform for electrochemical applications. Consequently very large electrochemical capacitance values, as high as 2.1 mF for a sample of 10 mm3, were achieved. The electrochemical capacitance of the material exhibits a dependence on bias voltage, a phenomenon observed by other groups when studying graphene quantum capacitance. The plasma-assisted graphitization, which dominates the graphitization process, is analyzed and discussed in detail.

  5. Direct fabrication of 3D graphene on nanoporous anodic alumina by plasma-enhanced chemical vapor deposition.

    PubMed

    Zhan, Hualin; Garrett, David J; Apollo, Nicholas V; Ganesan, Kumaravelu; Lau, Desmond; Prawer, Steven; Cervenka, Jiri

    2016-01-01

    High surface area electrode materials are of interest for a wide range of potential applications such as super-capacitors and electrochemical cells. This paper describes a fabrication method of three-dimensional (3D) graphene conformally coated on nanoporous insulating substrate with uniform nanopore size. 3D graphene films were formed by controlled graphitization of diamond-like amorphous carbon precursor films, deposited by plasma-enhanced chemical vapour deposition (PECVD). Plasma-assisted graphitization was found to produce better quality graphene than a simple thermal graphitization process. The resulting 3D graphene/amorphous carbon/alumina structure has a very high surface area, good electrical conductivity and exhibits excellent chemically stability, providing a good material platform for electrochemical applications. Consequently very large electrochemical capacitance values, as high as 2.1 mF for a sample of 10 mm(3), were achieved. The electrochemical capacitance of the material exhibits a dependence on bias voltage, a phenomenon observed by other groups when studying graphene quantum capacitance. The plasma-assisted graphitization, which dominates the graphitization process, is analyzed and discussed in detail. PMID:26805546

  6. Direct fabrication of 3D graphene on nanoporous anodic alumina by plasma-enhanced chemical vapor deposition

    PubMed Central

    Zhan, Hualin; Garrett, David J.; Apollo, Nicholas V.; Ganesan, Kumaravelu; Lau, Desmond; Prawer, Steven; Cervenka, Jiri

    2016-01-01

    High surface area electrode materials are of interest for a wide range of potential applications such as super-capacitors and electrochemical cells. This paper describes a fabrication method of three-dimensional (3D) graphene conformally coated on nanoporous insulating substrate with uniform nanopore size. 3D graphene films were formed by controlled graphitization of diamond-like amorphous carbon precursor films, deposited by plasma-enhanced chemical vapour deposition (PECVD). Plasma-assisted graphitization was found to produce better quality graphene than a simple thermal graphitization process. The resulting 3D graphene/amorphous carbon/alumina structure has a very high surface area, good electrical conductivity and exhibits excellent chemically stability, providing a good material platform for electrochemical applications. Consequently very large electrochemical capacitance values, as high as 2.1 mF for a sample of 10 mm3, were achieved. The electrochemical capacitance of the material exhibits a dependence on bias voltage, a phenomenon observed by other groups when studying graphene quantum capacitance. The plasma-assisted graphitization, which dominates the graphitization process, is analyzed and discussed in detail. PMID:26805546

  7. The K x-ray line structures of the 3d-transition metals in warm dense plasma

    NASA Astrophysics Data System (ADS)

    Szymańska, E.; Syrocki, Ł.; Słabkowska, K.; Polasik, M.; Rzadkiewicz, J.

    2016-09-01

    The shapes and positions of the Kα1 and Kα2 x-ray lines for 3d-transition metals can vary substantially as electrons are stripped from the outer-shells. This paper shows the detailed line shapes for nickel and zinc, obtained by calculations with a multiconfiguration Dirac-Fock method that includes Breit interaction and quantum electrodynamics corrections. The line shapes can be useful in interpreting hot, dense plasmas with energetic electrons for which the K x-ray lines are optically thin, as may be produced by pulsed power machines such as the plasma-filled rod pinch diode or the plasma focus, or in short-pulsed high power laser plasmas.

  8. Segmentation of Image Data from Complex Organotypic 3D Models of Cancer Tissues with Markov Random Fields

    PubMed Central

    Robinson, Sean; Guyon, Laurent; Nevalainen, Jaakko; Toriseva, Mervi

    2015-01-01

    Organotypic, three dimensional (3D) cell culture models of epithelial tumour types such as prostate cancer recapitulate key aspects of the architecture and histology of solid cancers. Morphometric analysis of multicellular 3D organoids is particularly important when additional components such as the extracellular matrix and tumour microenvironment are included in the model. The complexity of such models has so far limited their successful implementation. There is a great need for automatic, accurate and robust image segmentation tools to facilitate the analysis of such biologically relevant 3D cell culture models. We present a segmentation method based on Markov random fields (MRFs) and illustrate our method using 3D stack image data from an organotypic 3D model of prostate cancer cells co-cultured with cancer-associated fibroblasts (CAFs). The 3D segmentation output suggests that these cell types are in physical contact with each other within the model, which has important implications for tumour biology. Segmentation performance is quantified using ground truth labels and we show how each step of our method increases segmentation accuracy. We provide the ground truth labels along with the image data and code. Using independent image data we show that our segmentation method is also more generally applicable to other types of cellular microscopy and not only limited to fluorescence microscopy. PMID:26630674

  9. A 3D immersed finite element method with non-homogeneous interface flux jump for applications in particle-in-cell simulations of plasma-lunar surface interactions

    NASA Astrophysics Data System (ADS)

    Han, Daoru; Wang, Pu; He, Xiaoming; Lin, Tao; Wang, Joseph

    2016-09-01

    Motivated by the need to handle complex boundary conditions efficiently and accurately in particle-in-cell (PIC) simulations, this paper presents a three-dimensional (3D) linear immersed finite element (IFE) method with non-homogeneous flux jump conditions for solving electrostatic field involving complex boundary conditions using structured meshes independent of the interface. This method treats an object boundary as part of the simulation domain and solves the electric field at the boundary as an interface problem. In order to resolve charging on a dielectric surface, a new 3D linear IFE basis function is designed for each interface element to capture the electric field jump on the interface. Numerical experiments are provided to demonstrate the optimal convergence rates in L2 and H1 norms of the IFE solution. This new IFE method is integrated into a PIC method for simulations involving charging of a complex dielectric surface in a plasma. A numerical study of plasma-surface interactions at the lunar terminator is presented to demonstrate the applicability of the new method.

  10. PlasmaLab/EkoPlasma - The Future of Complex Plasma Research in Space

    NASA Astrophysics Data System (ADS)

    Knapek, Christina; Fortov, Vladimir; Huber, Peter; Mohr, Daniel; Konopka, Uwe; Lipaev, Andrey; Molotkov, Vladimir; Petrov, Oleg; Zähringer, Erich; Thomas, Hubertus

    2016-07-01

    The PlasmaLab project, a Russian-German cooperation, has the aim to develop a future laboratory for the investigation of complex plasmas under microgravity conditions on the International Space Station (ISS). Within the project, a new plasma chamber, the Zyflex chamber, has been developed and is now being prepared to be launched to the ISS in 2020 as a laboratory setup with the name EkoPlasma (Experiment komplex Plasma). The Zyflex chamber is a large, cylindrical plasma chamber with parallel, rf-driven electrodes and a flexible inner geometry. It is designed to extend the accessible experimental parameter range and to allow an independent control of the plasma parameters, therefore increasing the experimental possibilities and expected knowledge gain significantly. Further, a 3D optical diagnostic will allow for the study of particle dynamics in 3D realtime. Possible future research topics include e.g. phase transitions, the dynamics of liquids, phase separation, or turbulence. The experimental setup will be presented, as well as some preliminary results of experiments on earth and in parabolic flights to visualize the possibilities of this new laboratory. This work and some of the authors are funded by DLR/BMWi (FKZ 50WM1441).

  11. 2D and 3D PIC-MCC simulations of a low temperature magnetized plasma on CPU and GPU

    NASA Astrophysics Data System (ADS)

    Claustre, Jonathan; Chaudhury, Bhaskar; Fubiani, Gwenael; Boeuf, Jean-Pierre

    2012-10-01

    A Particle-In-Cell Monte Carlo Collisions model is used to described plasma transport in a low temperature magnetized plasma under conditions similar to those of the negative ion source for the neutral beam injector of ITER. A large diamagnetic electron current is present in the plasma because of the electron pressure gradient between the ICP driver of the source and the entrance of the magnetic filter, and is directed toward the chamber walls. The plasma potential adjusts to limit the diamagnetic electron current to the wall, leading to large electron current flow through the filter, and to a non uniform plasma density in the region between magnetic filter and extracting grids. On the basis of the PIC-MCC simulation results, we describe the plasma properties and electron current density distributions through the filter in 2D and 3D situations and use these models to better understand plasma transport across the filter in these conditions. We also present comparisons between computation times of two PIC-MCC simulation codes that have been developed for operations on standard CPU (Central Processing Units, code in Fortran) and on GPU (Graphics Processing Units, code in CUDA). The results show that the GPU simulation is about 25 times faster than the CPU one for a 2D domain with 512x512 grid points. The computation time ratio increases with the number of grid points.

  12. Use of rotational fluoroscopy and 3-D reconstruction for pre-operative imaging of complex cloacal malformations.

    PubMed

    Patel, Manish N

    2016-04-01

    Complex cloacal malformations are associated with a wide spectrum of anatomic defects involving the gastrointestinal, urinary, and gynecologic tracts; the variety and complexity of these defects complicate surgical planning and repair. Rotational fluoroscopy with 3-D reconstruction provides precise anatomic detail, particularly regarding length of the common channel, appearance/location of the vagina(s) and bladder, which facilitates surgical planning and determination of prognosis. PMID:26969233

  13. Cooperative particle motion in complex (dusty) plasmas

    NASA Astrophysics Data System (ADS)

    Zhdanov, Sergey; Morfill, Gregor

    2014-05-01

    Strongly coupled complex (dusty) plasmas give us a unique opportunity to go beyond the limits of continuous media and study various generic processes occurring in liquids or solids at the kinetic level. A particularly interesting and challenging topic is to study dynamic cooperativity at local and intermediate scales. As an important element of self-organization, cooperative particle motion is present in many physical, astrophysical and biological systems. As a rule, cooperative dynamics, bringing to life 'abnormal' effects like enhanced diffusion, self-dragging, or self-propelling of particles, hold aspects of 'strange' kinetics. The synergy effects are also important. Such kind of cooperative behavior was evidenced for string-like formations of colloidal rods, dynamics of mono- and di-vacancies in 2d colloidal crystals. Externally manipulated 'dust molecules' and self-assembled strings in driven 3d particle clusters were other noticeable examples. There is a certain advantage to experiment with complex plasmas merely because these systems are easy to manipulate in a controllable way. We report on the first direct observation of microparticle cooperative movements occurring under natural conditions in a 2d complex plasma.

  14. Short and long time effects of low temperature Plasma Activated Media on 3D multicellular tumor spheroids

    PubMed Central

    Judée, Florian; Fongia, Céline; Ducommun, Bernard; Yousfi, Mohammed; Lobjois, Valérie; Merbahi, Nofel

    2016-01-01

    This work investigates the regionalized antiproliferative effects of plasma-activated medium (PAM) on colon adenocarcinoma multicellular tumor spheroid (MCTS), a model that mimics 3D organization and regionalization of a microtumor region. PAM was generated by dielectric barrier plasma jet setup crossed by helium carrier gas. MCTS were transferred in PAM at various times after plasma exposure up to 48 hours and effect on MCTS growth and DNA damage were evaluated. We report the impact of plasma exposure duration and delay before transfer on MCTS growth and DNA damage. Local accumulation of DNA damage revealed by histone H2AX phosphorylation is observed on outermost layers and is dependent on plasma exposure. DNA damage is completely reverted by catalase addition indicating that H2O2 plays major role in observed genotoxic effect while growth inhibitory effect is maintained suggesting that it is due to others reactive species. SOD and D-mannitol scavengers also reduced DNA damage by 30% indicating that and OH* are involved in H2O2 formation. Finally, PAM is able to retain its cytotoxic and genotoxic activity upon storage at +4 °C or −80 °C. These results suggest that plasma activated media may be a promising new antitumor strategy for colorectal cancer tumors. PMID:26898904

  15. Short and long time effects of low temperature Plasma Activated Media on 3D multicellular tumor spheroids

    NASA Astrophysics Data System (ADS)

    Judée, Florian; Fongia, Céline; Ducommun, Bernard; Yousfi, Mohammed; Lobjois, Valérie; Merbahi, Nofel

    2016-02-01

    This work investigates the regionalized antiproliferative effects of plasma-activated medium (PAM) on colon adenocarcinoma multicellular tumor spheroid (MCTS), a model that mimics 3D organization and regionalization of a microtumor region. PAM was generated by dielectric barrier plasma jet setup crossed by helium carrier gas. MCTS were transferred in PAM at various times after plasma exposure up to 48 hours and effect on MCTS growth and DNA damage were evaluated. We report the impact of plasma exposure duration and delay before transfer on MCTS growth and DNA damage. Local accumulation of DNA damage revealed by histone H2AX phosphorylation is observed on outermost layers and is dependent on plasma exposure. DNA damage is completely reverted by catalase addition indicating that H2O2 plays major role in observed genotoxic effect while growth inhibitory effect is maintained suggesting that it is due to others reactive species. SOD and D-mannitol scavengers also reduced DNA damage by 30% indicating that and OH* are involved in H2O2 formation. Finally, PAM is able to retain its cytotoxic and genotoxic activity upon storage at +4 °C or -80 °C. These results suggest that plasma activated media may be a promising new antitumor strategy for colorectal cancer tumors.

  16. Short and long time effects of low temperature Plasma Activated Media on 3D multicellular tumor spheroids.

    PubMed

    Judée, Florian; Fongia, Céline; Ducommun, Bernard; Yousfi, Mohammed; Lobjois, Valérie; Merbahi, Nofel

    2016-01-01

    This work investigates the regionalized antiproliferative effects of plasma-activated medium (PAM) on colon adenocarcinoma multicellular tumor spheroid (MCTS), a model that mimics 3D organization and regionalization of a microtumor region. PAM was generated by dielectric barrier plasma jet setup crossed by helium carrier gas. MCTS were transferred in PAM at various times after plasma exposure up to 48 hours and effect on MCTS growth and DNA damage were evaluated. We report the impact of plasma exposure duration and delay before transfer on MCTS growth and DNA damage. Local accumulation of DNA damage revealed by histone H2AX phosphorylation is observed on outermost layers and is dependent on plasma exposure. DNA damage is completely reverted by catalase addition indicating that H2O2 plays major role in observed genotoxic effect while growth inhibitory effect is maintained suggesting that it is due to others reactive species. SOD and D-mannitol scavengers also reduced DNA damage by 30% indicating that O(2)(-)* and OH* are involved in H2O2 formation. Finally, PAM is able to retain its cytotoxic and genotoxic activity upon storage at +4 °C or -80 °C. These results suggest that plasma activated media may be a promising new antitumor strategy for colorectal cancer tumors. PMID:26898904

  17. Alkynes as a versatile platform for construction of chemical molecular complexity and realization of molecular 3D printing

    NASA Astrophysics Data System (ADS)

    Galkin, K. I.; Ananikov, V. P.

    2016-03-01

    The current level of scientific and technological development requires the formation of general tools and techniques. One of the most versatile technologies is 3D printing, which allows fast and efficient creation of materials and biological objects of desired shape and composition. Today, methods have been developed for 3D printing of macro- and nano-sized objects and for production of films and deposited materials with molecular precision but the most promising technology is printing at the molecular level (molecular 3D printing) for the purpose of direct construction of molecular complexity. This process is currently at the initial stage concerning selection of simple molecules to be used as building blocks possessing flexibility, availability and ease of modification. In this review, we examine the possible versatile synthons suitable for preparation of the main types of organic compounds using molecular 3D printing. The surveyed data strongly indicate that alkyne molecules may be used as a building material in a molecular 3D printer working on hydrocarbons. The bibliography includes 428 references.

  18. 3D Holographic Observatory for Long-term Monitoring of Complex Behaviors in Drosophila.

    PubMed

    Kumar, S Santosh; Sun, Yaning; Zou, Sige; Hong, Jiarong

    2016-01-01

    Drosophila is an excellent model organism towards understanding the cognitive function, aging and neurodegeneration in humans. The effects of aging and other long-term dynamics on the behavior serve as important biomarkers in identifying such changes to the brain. In this regard, we are presenting a new imaging technique for lifetime monitoring of Drosophila in 3D at spatial and temporal resolutions capable of resolving the motion of limbs and wings using holographic principles. The developed system is capable of monitoring and extracting various behavioral parameters, such as ethograms and spatial distributions, from a group of flies simultaneously. This technique can image complicated leg and wing motions of flies at a resolution, which allows capturing specific landing responses from the same data set. Overall, this system provides a unique opportunity for high throughput screenings of behavioral changes in 3D over a long term in Drosophila. PMID:27605243

  19. 3D Holographic Observatory for Long-term Monitoring of Complex Behaviors in Drosophila

    PubMed Central

    Kumar, S. Santosh; Sun, Yaning; Zou, Sige; Hong, Jiarong

    2016-01-01

    Drosophila is an excellent model organism towards understanding the cognitive function, aging and neurodegeneration in humans. The effects of aging and other long-term dynamics on the behavior serve as important biomarkers in identifying such changes to the brain. In this regard, we are presenting a new imaging technique for lifetime monitoring of Drosophila in 3D at spatial and temporal resolutions capable of resolving the motion of limbs and wings using holographic principles. The developed system is capable of monitoring and extracting various behavioral parameters, such as ethograms and spatial distributions, from a group of flies simultaneously. This technique can image complicated leg and wing motions of flies at a resolution, which allows capturing specific landing responses from the same data set. Overall, this system provides a unique opportunity for high throughput screenings of behavioral changes in 3D over a long term in Drosophila. PMID:27605243

  20. Molecular basis for cytokine biomarkers of complex 3D microtissue physiology in vitro.

    PubMed

    Asthana, Amish; Kisaalita, William S

    2016-06-01

    'Physiologically more-relevant' claims are readily made for cells cultured on any surface or in a scaffold that provides loosely defined 3D geometry. A set of tools to measure culture '3D-ness' more accurately are needed. Such tools should find applications in fields ranging from high-throughput identification of substrates for tissue engineering and regenerative medicine to cell-based screening of drug candidates. Until now, these fields have not provided a consensus for the most promising place to initiate the search. Here, we review recent advances in transcriptomic, proteomic, inflammation and oncology-related pathways, as well as functional studies that strongly point to cytokines as the most likely compounds to form the missing consensus. PMID:27021792

  1. Fast 3D modeling in complex environments using a single Kinect sensor

    NASA Astrophysics Data System (ADS)

    Yue, Haosong; Chen, Weihai; Wu, Xingming; Liu, Jingmeng

    2014-02-01

    Three-dimensional (3D) modeling technology has been widely used in inverse engineering, urban planning, robot navigation, and many other applications. How to build a dense model of the environment with limited processing resources is still a challenging topic. A fast 3D modeling algorithm that only uses a single Kinect sensor is proposed in this paper. For every color image captured by Kinect, corner feature extraction is carried out first. Then a spiral search strategy is utilized to select the region of interest (ROI) that contains enough feature corners. Next, the iterative closest point (ICP) method is applied to the points in the ROI to align consecutive data frames. Finally, the analysis of which areas can be walked through by human beings is presented. Comparative experiments with the well-known KinectFusion algorithm have been done and the results demonstrate that the accuracy of the proposed algorithm is the same as KinectFusion but the computing speed is nearly twice of KinectFusion. 3D modeling of two scenes of a public garden and traversable areas analysis in these regions further verified the feasibility of our algorithm.

  2. Synthesis, characterization and antifungal activities of 3d-transition metal complexes of 1-acetylpiperazinyldithioc arbamate, M(acpdtc) 2

    NASA Astrophysics Data System (ADS)

    Mohammad, Ali; Varshney, Charu; Nami, Shahab A. A.

    2009-07-01

    A series of mononuclear 3d-transition metal complexes of the type M(acpdtc) 2 have been synthesized (where acpdtc = 1-acetylpiperazinyldithiocarbamate, M = Mn(II), Fe(II), Co(II), Ni(II) and Cu(II)). The ligand and its complexes have been characterized by micro analysis (CHNS), TG/DSC, FT-IR, UV-vis, 1H NMR, magnetic susceptibility and conductance measurements. On the basis IR spectroscopy a symmetrical bidentate coordination has been observed for the 1-acetylpiperazinyldithiocarbamate moiety in all the complexes. On the basis of UV-vis spectra and magnetic susceptibility measurement a square-planar geometry has been proposed for the Ni(II) and Cu(II) complexes while the other complexes have been found to acquire a distorted-tetrahedral structure. The thermogravimetric and differential scanning calorimetric profile of the ligand indicates a two-step decomposition pattern while the complexes exhibit a three-stage thermogram forming metal sulfide as the eventual end product. The molar conductivity data of 1 mM solution in DMSO of the complexes is in close accord to their non-electrolytic behaviour. The ligand and its 3d-transition metal complexes have also been tested for their antifungicidal activity by agar well diffusion method using Fusarium sp. and Sclerotina sp. The maximum activity has been observed in case of Mn(II) and Fe(II) complexes.

  3. Implementation of a 3D halo neutral model in the TRANSP code and application to projected NSTX-U plasmas

    NASA Astrophysics Data System (ADS)

    Medley, S. S.; Liu, D.; Gorelenkova, M. V.; Heidbrink, W. W.; Stagner, L.

    2016-02-01

    A 3D halo neutral code developed at the Princeton Plasma Physics Laboratory and implemented for analysis using the TRANSP code is applied to projected National Spherical Torus eXperiment-Upgrade (NSTX-U plasmas). The legacy TRANSP code did not handle halo neutrals properly since they were distributed over the plasma volume rather than remaining in the vicinity of the neutral beam footprint as is actually the case. The 3D halo neutral code uses a ‘beam-in-a-box’ model that encompasses both injected beam neutrals and resulting halo neutrals. Upon deposition by charge exchange, a subset of the full, one-half and one-third beam energy components produce first generation halo neutrals that are tracked through successive generations until an ionization event occurs or the descendant halos exit the box. The 3D halo neutral model and neutral particle analyzer (NPA) simulator in the TRANSP code have been benchmarked with the Fast-Ion D-Alpha simulation (FIDAsim) code, which provides Monte Carlo simulations of beam neutral injection, attenuation, halo generation, halo spatial diffusion, and photoemission processes. When using the same atomic physics database, TRANSP and FIDAsim simulations achieve excellent agreement on the spatial profile and magnitude of beam and halo neutral densities and the NPA energy spectrum. The simulations show that the halo neutral density can be comparable to the beam neutral density. These halo neutrals can double the NPA flux, but they have minor effects on the NPA energy spectrum shape. The TRANSP and FIDAsim simulations also suggest that the magnitudes of beam and halo neutral densities are relatively sensitive to the choice of the atomic physics databases.

  4. Characteristics of divertor heat and particle deposition with intrinsic and applied 3-D fields in NSTX H-mode plasmas

    SciTech Connect

    Ahn, J.W.; Canik, John; Maingi, Rajesh; Gray, Travis K; Lore, Jeremy D; McLean, Adam G; Park, J.-K.; Roquemore, A. L.; Soukhanovskii, V. A.

    2011-01-01

    Divertor heat and particle flux profiles are modified by externally imposed non-axisymmetric magnetic perturbations in the National Spherical Torus Experiment. The applied 3-D field causes strike point splitting that is represented as local peaks and valleys in the divertor profiles. The plasma response in an ideal perturbed equilibrium approach was included in the field line tracing by taking account of the B-field generated by the plasma current up to a certain fraction of normalized flux inside the separatrix and being superposed to the vacuum field. The inclusion of this type of plasma response does not significantly affect the location and spacing of the split strike points at the divertor surface. A modest level of divertor profile modification is found to occur even without the application of 3-D fields in certain high triangularity (delta = 0.65-0.8) discharges, with the location of local peaks and valleys same before and after the application. The intrinsic error field from the non-circularity of PF5 coil is known to have primarily n = 3 component in NSTX and was modeled to be included in the vacuum field line tracing. The produced puncture plot of the field line along with the connection length profile shows that the radial location of local peaks agrees well with the measurement, identifying intrinsic error field as a possible source of intrinsic strike point splitting. The radial location of local peaks in the profiles during the triggered ELM by the applied n = 3 field is the same before and after the 3-D field application. This shows that the heat flux from the triggered ELMs appears to follow the imposed n = 3 field structure.

  5. Complex Crustal Structure Beneath Western Turkey Revealed by 3D Seismic Full Waveform Inversion (FWI)

    NASA Astrophysics Data System (ADS)

    Cubuk-Sabuncu, Yesim; Taymaz, Tuncay; Fichtner, Andreas

    2016-04-01

    We present a 3D radially anisotropic velocity model of the crust and uppermost mantle structure beneath the Sea of Marmara and surroundings based on the full waveform inversion method. The intense seismic activity and crustal deformation are observed in the Northwest Turkey due to transition tectonics between the strike-slip North Anatolian Fault (NAF) and the extensional Aegean region. We have selected and simulated complete waveforms of 62 earthquakes (Mw > 4.0) occurred during 2007-2015, and recorded at (Δ < 10°) distances. Three component earthquake data is obtained from broadband seismic stations of Kandilli Observatory and Earthquake Research Center (KOERI, Turkey), Hellenic Unified Seismic Network (HUSN, Greece) and Earthquake Research Center of Turkey (AFAD-DAD). The spectral-element solver of the wave equation, SES3D algorithm, is used to simulate seismic wave propagation in 3D spherical coordinates (Fichtner, 2009). The Large Scale Seismic Inversion Framework (LASIF) workflow tool is also used to perform full seismic waveform inversion (Krischer et al., 2015). The initial 3D Earth model is implemented from the multi-scale seismic tomography study of Fichtner et al. (2013). Discrepancies between the observed and simulated synthetic waveforms are determined using the time-frequency misfits which allows a separation between phase and amplitude information (Fichtner et al., 2008). The conjugate gradient optimization method is used to iteratively update the initial Earth model when minimizing the misfit. The inversion is terminated after 19 iterations since no further advances are observed in updated models. Our analysis revealed shear wave velocity variations of the shallow and deeper crustal structure beneath western Turkey down to depths of ~35-40 km. Low shear wave velocity anomalies are observed in the upper and mid crustal depths beneath major fault zones located in the study region. Low velocity zones also tend to mark the outline of young volcanic

  6. Interdisciplinary research with complex plasmas

    SciTech Connect

    Morfill, G. E.; Ivlev, A. V.; Brandt, P.; Loewen, H.

    2010-06-16

    In this topical review we combine results of research from the field of complex plasmas and colloidal dispersions. This research has opened the way to study strong coupling phenomena in real space and time at the most fundamental kinetic level. The physics of complex plasmas is dominated by the dynamics of slow moving and individually visible microparticles. In contrast to colloidal suspensions, where the fluid background medium results in huge overdamping, the neutral gas background medium in complex plasmas introduces only very little damping so that processes at all relevant time scales can be studied. This is of particular importance for some of the most outstanding questions in the self-organization of matter and critical phenomena.

  7. Planetary plasma data analysis and 3D visualisation tools of the CDPP in the IMPEx infrastructure

    NASA Astrophysics Data System (ADS)

    Gangloff, Michel; Génot, Vincent; Khodachenko, Maxim; Modolo, Ronan; Kallio, Esa; Alexeev, Igor; Al-Ubaidi, Tarek; Scherf, Manuel; André, Nicolas; Bourrel, Nataliya; Budnik, Elena; Bouchemit, Myriam; Dufourg, Nicolas; Beigbeder, Laurent

    2015-04-01

    The CDPP (Centre de Données de la Physique des Plasmas,(http://cdpp.eu/), the French data center for plasma physics, is engaged for more than a decade in the archiving and dissemination of plasma data products from space missions and ground observatories. Besides these activities, the CDPP developed services like AMDA (http://amda.cdpp.eu/) which enables in depth analysis of a large amount of data through dedicated functionalities such as: visualization, conditional search, cataloguing, and 3DView (http://3dview.cdpp.eu/) which provides immersive visualisations in planetary environments and is further developed to include simulation and observational data. Both tools provide an interface to the IMPEx infrastructure (http://impexfp7.oeaw.ac.at) which facilitates the joint access to outputs of simulations (MHD or Hybrid models) in planetary sciences from providers like LATMOS, FMI as well as planetary plasma observational data provided by the CDPP. Several magnetospheric models are implemented in 3Dview (e.g. Tsyganenko for the Earth, and Cain for Mars). Magnetospheric models provided by SINP for the Earth, Jupiter, Saturn and Mercury as well as Hess models for Jupiter can also be used in 3DView, through the IMPEx infrastructure. A use case demonstrating the new capabilities offered by these tools and their interaction, including magnetospheric models, will be presented together with the IMPEx simulation metadata model used for the interface to simulation databases and model providers.

  8. EB1-recruited microtubule +TIP complexes coordinate protrusion dynamics during 3D epithelial remodeling

    PubMed Central

    Gierke, Sarah; Wittmann, Torsten

    2012-01-01

    SUMMARY Background Epithelial remodeling, in which apical-basal polarized cells switch to a migratory phenotype, plays a central role in development and disease of multicellular organisms. Although dynamic microtubules (MTs) are required for directed migration on flat surfaces, how MT dynamics are controlled or contribute to epithelial remodeling in a more physiological three-dimensional (3D) environment is not understood. We use confocal live cell imaging to analyze MT function and dynamics during 3D epithelial morphogenesis and remodeling of polarized Madin-Darby canine kidney (MDCK) epithelial cells that undergo partial epithelial-to-mesenchymal transition (EMT) in response to hepatocyte growth factor (HGF). Results We find that HGF treatment increases MT growth rate before morphological changes are evident, and that large numbers of MTs grow into HGF-induced cell extensions independent of centrosome reorientation. Using lentivirus-mediated shRNA, we demonstrate that EB1, an adaptor protein that mediates recruitment of numerous other +TIP proteins to growing MT plus ends, is required for this HGF-induced MT reorganization. We further show that protrusion and adhesion dynamics are disorganized, and that vesicular trafficking to the tip of HGF-induced cell extensions is disrupted in EB1-depleted cells. Conclusions We conclude that EB1-mediated interactions with growing MTs are important to coordinate cell shape changes and directed migration into the surrounding extracellular matrix during epithelial remodeling in a physiological 3D environment. In contrast, EB1 is not required for the establishment or maintenance of apical-basal cell polarity, suggesting different functions of +TIPs and MTs in different types of cell polarity. PMID:22483942

  9. 3D magnetotelluric modelling of the Alnö alkaline and carbonatite ring complex, central Sweden

    NASA Astrophysics Data System (ADS)

    Yan, Ping; Andersson, Magnus; Kalscheuer, Thomas; García Juanatey, María A.; Malehmir, Alireza; Shan, Chunling; Pedersen, Laust B.; Almqvist, Bjarne S. G.

    2016-06-01

    Thirty-four broadband magnetotelluric stations were deployed across the Alnö alkaline and carbonatite ring intrusion in central Sweden. The measurements were designed such that both 2D models along existing seismic profiles and a 3D model can be constructed. Alnö Island and surrounding areas are densely populated and industrialized and in order to reduce the effect of noise, the remote reference technique was utilized in time series processing. Strike and dimensionality analyses together with the induction arrows show that there is no homogeneous regional strike direction in this area. Therefore, only the determinant of the impedance tensor was used for 2D inversion whereas all elements of the impedance tensor were used for 3D inversion. Representative rock samples were collected from existing outcrops and their resistivities were measured in the laboratory to facilitate interpretation of the inversion models. The results from these measurements show that coarse-grained (sövite, white color) and fine-grained (dark color) carbonatites are the most conductive and resistive rock types, respectively. In accordance with the interpretation of the reflection seismic images, the 2D and 3D resistivity models depict the caldera-related ring-type fault system and updoming faulted and fractured systems as major 10-500 Ωm conductors, extending down to about 3 km depth. A central ~ 4000 Ωm resistive unit at about 3 km depth appears to correspond to a solidified fossil magma chamber as speculated from the reflection seismic data and earlier field geological studies.

  10. Extension to 3-D of the low-frequency electromagnetic plasma simulation models, LDRD Final Report 95-ERD-036

    SciTech Connect

    Hewett, D.W.; DiPeso, G.; Gibbons, M; Lambert, M.; Tung, L.S.

    1997-02-03

    Low-frequency electromagnetic simulation models have a wide range of industrial applications. We have built several models, differentiated by slightly different physics approximations or computational solution methods, that have proven quite useful in a variety of applications. Our models been used to investigate beam plasma interactions in ICF targets, antenna plasma coupling in plasma processing, and magnetic implosion drive in Z-pinch pulsed power generators. The common feature of these models is that they retain inductive effects but implicitly ignore computationally intensive, fully electromagnetic effects. However, the preponderance of our work has been limited to only two dimensions. We have made significant progress modeling low-frequency electromagnetic physics with a new model in 2-D that is now capable of modeling antenna structures in 3-D. Although LLNL`s interest in plasma processing has diminished, we have certainly added to LLNL`s capabilities. Interestingly, we have already found another application, the magnetic behavior of read/write heads in the magnetic storage industry, that can make use of many of the computational methods described here, rewarding us again for maintaining a strong core competency in low-frequency EM plasmas.

  11. Upscaling small heterogeneities for seismic wave propagation in 3D complex media

    NASA Astrophysics Data System (ADS)

    Cupillard, P.; Capdeville, Y.

    2012-04-01

    Seismic waves propagating in the Earth are affected by different sizes of heterogeneities. When modelling these waves (using numerical methods such as the SEM), taking into account heterogeneities that are much smaller than the minimum wavelength is a challenge because meshing small heterogeneities often requires important efforts and leads to high numerical costs. In this work, we present a technique which allows to upscale the small heterogeneities that can lie in an elastic medium. This technique yields a smooth effective medium and effective equations. We describe its implementation in the 3D case and we show relevant examples.

  12. Jovian's plasma torus interaction with Europa. E12 pass: 3D hybrid kinetic modeling

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Cooper, J. F.; Sittler, E. C., Jr.; Paterson, W. R.; Hartle, R. E.

    2012-09-01

    The hybrid kinetic model supports comprehensive simulation of the interaction between different spatial and energetic elements of the Europa moonmagnetosphere system with respect to variable upstream magnetic field and flux or density distributions of plasma and energetic ions, electrons, and neutral atoms. This capability is critical for improving the interpretation of the existing Europa flybymeasurements from Galileo orbital mission and for planning flyby and orbital measurements for future missions. The simulations are based on recent models of the atmosphere of Europa [1, 2, 3]. The upstream parameters have been chosen from the plasma and magnetic field Galileo E12 observations, [4, 5]. In contrast to previous approaches with MHD simulations, the hybrid model allows us to fully take into account the finite gyroradius effect and electron pressure, and to correctly estimate the ions velocity distribution and the fluxes along themagnetic field [6]. Photoionization, electron-impact ionization and charge exchange are included in our model. The temperature of the background electrons and pickup electrons was also included into the generalized Ohm's law. The background plasma contains heavy (Mi/Qi = 16) and light (Mi/Qi = 1) ions [4]. In our modeling we take into account only O+ ions for magnetospheric plasma. The pickup ions were created from the atmosphere. The majority of O2 atmosphere is thermal with an extended non-thermal population [1]. The moon is modeled in this initial work as a weakly conducting body. The critical point of E12 pass is the extremely high density in upstream plasma, e.g. n0 = 70-571 cm-3 for ions with Mi/Qi ratio equals 16. This density results in to the superAlfvénic flow and it will change the physics of the interaction between Jovianmagnetosphere and Europa. The modeling show the formation of the Mach cone instead of the Alfv'en wing which was observed in hybrid modeling of E4 pass [6]. The modeling shows that the effective size of the

  13. Flying triangulation - A motion-robust optical 3D sensor for the real-time shape acquisition of complex objects

    NASA Astrophysics Data System (ADS)

    Willomitzer, Florian; Ettl, Svenja; Arold, Oliver; Häusler, Gerd

    2013-05-01

    The three-dimensional shape acquisition of objects has become more and more important in the last years. Up to now, there are several well-established methods which already yield impressive results. However, even under quite common conditions like object movement or a complex shaping, most methods become unsatisfying. Thus, the 3D shape acquisition is still a difficult and non-trivial task. We present our measurement principle "Flying Triangulation" which enables a motion-robust 3D acquisition of complex-shaped object surfaces by a freely movable handheld sensor. Since "Flying Triangulation" is scalable, a whole sensor-zoo for different object sizes is presented. Concluding, an overview of current and future fields of investigation is given.

  14. High performance computing approaches for 3D reconstruction of complex biological specimens.

    PubMed

    da Silva, M Laura; Roca-Piera, Javier; Fernández, José-Jesús

    2010-01-01

    Knowledge of the structure of specimens is crucial to determine the role that they play in cellular and molecular biology. To yield the three-dimensional (3D) reconstruction by means of tomographic reconstruction algorithms, we need the use of large projection images and high processing time. Therefore, we propose the use of the high performance computing (HPC) to cope with the huge computational demands of this problem. We have implemented a HPC strategy where the distribution of tasks follows the master-slave paradigm. The master processor distributes a slab of slices, a piece of the final 3D structure to reconstruct, among the slave processors and receives reconstructed slices of the volume. We have evaluated the performance of our HPC approach using different sizes of the slab. We have observed that it is possible to find out an optimal size of the slab for the number of processor used that minimize communications time while maintaining a reasonable grain of parallelism to be exploited by the set of processors. PMID:20865517

  15. Application for 3d Scene Understanding in Detecting Discharge of Domesticwaste Along Complex Urban Rivers

    NASA Astrophysics Data System (ADS)

    Ninsalam, Y.; Qin, R.; Rekittke, J.

    2016-06-01

    In our study we use 3D scene understanding to detect the discharge of domestic solid waste along an urban river. Solid waste found along the Ciliwung River in the neighbourhoods of Bukit Duri and Kampung Melayu may be attributed to households. This is in part due to inadequate municipal waste infrastructure and services which has caused those living along the river to rely upon it for waste disposal. However, there has been little research to understand the prevalence of household waste along the river. Our aim is to develop a methodology that deploys a low cost sensor to identify point source discharge of solid waste using image classification methods. To demonstrate this we describe the following five-step method: 1) a strip of GoPro images are captured photogrammetrically and processed for dense point cloud generation; 2) depth for each image is generated through a backward projection of the point clouds; 3) a supervised image classification method based on Random Forest classifier is applied on the view dependent red, green, blue and depth (RGB-D) data; 4) point discharge locations of solid waste can then be mapped by projecting the classified images to the 3D point clouds; 5) then the landscape elements are classified into five types, such as vegetation, human settlement, soil, water and solid waste. While this work is still ongoing, the initial results have demonstrated that it is possible to perform quantitative studies that may help reveal and estimate the amount of waste present along the river bank.

  16. Jovian Plasma Torus Interaction with Europa: 3D Hybrid Kinetic Simulation. First results

    NASA Technical Reports Server (NTRS)

    Lipatov, A. S.; Cooper, J. F.; Paterson, W. R.; Sittler, E. C.; Hartle, R. E.; Simpson, D. G.

    2010-01-01

    The hybrid kinetic model supports comprehensive simulation of the interaction between different spatial and energetic elements of the Europa-moon-magnetosphere system with respect to variable upstream magnetic field and flux or density distributions of plasma and energetic ions, electrons, and neutral atoms. This capability is critical for improving the interpretation of the existing Europa flyby measurements from the Galileo orbiter mission, and for planning flyby and orbital measurements, (including the surface and atmospheric compositions) for future missions. The simulations are based on recent models of the atmosphere of Europa (Cassidy etal.,2007;Shematovichetal.,2005). In contrast to previous approaches with MHD simulations, the hybrid model allows us to fully take into account the finite gyro radius effect and electron pressure, and to correctly estimate the ion velocity distribution and the fluxes along the magnetic field (assuming an initial Maxwellian velocity distribution for upstream background ions).Non-thermal distributions of upstream plasma will be addressed in future work. Photoionization,electron-impact ionization, charge exchange and collisions between the ions and neutrals are also included in our model. We consider two models for background plasma:(a) with O(++) ions; (b) with O(++) and S(++) ions. The majority of O2 atmosphere is thermal with an extended cold population (Cassidyetal.,2007). A few first simulations already include an induced magnetic dipole; however, several important effects of induced magnetic fields arising from oceanic shell conductivity will be addressed in later work.

  17. Titan's plasma environment: 3D hybrid simulation and comparison with observations

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Sittler, E. C.; Hartle, R. E.

    2007-12-01

    A multiscale combined (fluid--kinetic) numerical method allows us to use more realistic plasma models at Titan. This method takes into account charge-exchange and photoionization processes. We study the Titan's plasma environment in case of high, intermediate and low exosphere density in Chamberlain models. The background ions H+, O+ and pickup ions H2+, CH4+ and N2+ are described in a kinetic approximation, where the electrons are approximated as a fluid. We also include an immobile ionosphere at the height 1300km. In this report we consider the multiscale spatial structure for plasma and electromagnetic field, and the velocity distribution of ions that results from the coupling between background ions and pickup ions. Special attention will be paid for the comparisons our numerical results with Voyager and Cassini observations (see e.g. [Sittler, Hartle, et al., 2005; Hartle, Sittler et al., 2006]). We shall estimate of mass loading rate for Ta, energy input to upper atmosphere from ambient +pickup ions, and the T9 encounter with two crossings. \

  18. Observations of the 3-D distribution of interplanetary electrons and ions from solar wind plasma to low energy cosmic rays

    NASA Technical Reports Server (NTRS)

    Lin, R. P.; Anderson, K. A.; Ashford, S.; Carlson, C.; Curtis, D.; Ergun, R.; Larson, D.; McFadden, J.; McCarthy, M.; Parks, G. K.

    1995-01-01

    The 3-D Plasma and Energetic Particle instrument on the GGS Wind spacecraft (launched November 1, 1994) is designed to make measurements of the full three-dimensional distribution of suprathermal electrons and ions from solar wind plasma to low energy cosmic rays, with high sensitivity, wide dynamic range, good energy and angular resolution, and high time resolution. Three pairs of double-ended telescopes, each with two or three closely sandwiched passivated ion implanted silicon detectors measure electrons and ions from approximately 20 keV to greater than or equal to 300 keV. Four top-hat symmetrical spherical section electrostatic analyzers with microchannel plate detectors, a large and a small geometric factor analyzer for electrons and a similar pair for ions, cover from approximately 3 eV to 30 keV. We present preliminary observations of the electron and ion distributions in the absence of obvious solar impulsive events and upstream particles. The quiet time electron energy spectrum shows a smooth approximately power law fall-off extending from the halo population at a few hundred eV to well above approximately 100 keV The quiet time ion energy spectrum also shows significant fluxes over this energy range. Detailed 3-D distributions and their temporal variations will be presented.

  19. 3D Dynamics of Magnetic Flux Ropes Across Scales: Solar Eruptions and Sun-Earth Plasma Coupling

    NASA Astrophysics Data System (ADS)

    Chen, James

    2012-10-01

    Central to the understanding of the eruptive phenomena on the Sun and their impact on the terrestrial plasma environment is the dynamics of coronal mass ejections (CMEs)---a 3D magnetic flux rope configuration---and the evolution of their magnetic fields. I will discuss the basic physics of CME eruption and solar flare energy release in the context of the analytic erupting flux rope model of CMEs. In this ideal MHD model, a CME is treated as a 3D flux rope with its two stationary footpoints anchored in the Sun. The model structure is non-axisymmetric and embedded in a model corona/solar wind. The initial flux rope is driven out of equilibrium by ``injection'' of poloidal flux and propagates under the Lorentz hoop force from the Sun to 1 AU, across a wide range of spatial and temporal scales. Comparisons of the model results and recent STEREO observations show that the solutions that best fit the observed CME position-time data (to within 1-2% of data) also correctly replicate the temporal profiles of associated flare X-ray emissions (GOES data) and the in situ magnetic field and plasma data of the CME ejecta at 1 AU where such data are available (e.g., ACE and STEREO/IMPAXCT/PLASTIC data), providing a unified basis of understanding CME dynamics and flare energetics.

  20. Dynamic complex optical fields for optical manipulation, 3D microscopy, and photostimulation of neurotransmitters

    NASA Astrophysics Data System (ADS)

    Daria, Vincent R.; Stricker, Christian; Bekkers, John; Redman, Steve; Bachor, Hans

    2010-08-01

    We demonstrate a multi-functional system capable of multiple-site two-photon excitation of photo-sensitive compounds as well as transfer of optical mechanical properties on an array of mesoscopic particles. We use holographic projection of a single Ti:Sapphire laser operating in femtosecond pulse mode to show that the projected three-dimensional light patterns have sufficient spatiotemporal photon density for multi-site two-photon excitation of biological fluorescent markers and caged neurotransmitters. Using the same laser operating in continuous-wave mode, we can use the same light patterns for non-invasive transfer of both linear and orbital angular momentum on a variety of mesoscopic particles. The system also incorporates high-speed scanning using acousto-optic modulators to rapidly render 3D images of neuron samples via two-photon microscopy.

  1. Design methodology: edgeless 3D ASICs with complex in-pixel processing for pixel detectors

    NASA Astrophysics Data System (ADS)

    Fahim, Farah; Deptuch, Grzegorz W.; Hoff, James R.; Mohseni, Hooman

    2015-08-01

    The design methodology for the development of 3D integrated edgeless pixel detectors with in-pixel processing using Electronic Design Automation (EDA) tools is presented. A large area 3 tier 3D detector with one sensor layer and two ASIC layers containing one analog and one digital tier, is built for x-ray photon time of arrival measurement and imaging. A full custom analog pixel is 65μm x 65μm. It is connected to a sensor pixel of the same size on one side, and on the other side it has approximately 40 connections to the digital pixel. A 32 x 32 edgeless array without any peripheral functional blocks constitutes a sub-chip. The sub-chip is an indivisible unit, which is further arranged in a 6 x 6 array to create the entire 1.248cm x 1.248cm ASIC. Each chip has 720 bump-bond I/O connections, on the back of the digital tier to the ceramic PCB. All the analog tier power and biasing is conveyed through the digital tier from the PCB. The assembly has no peripheral functional blocks, and hence the active area extends to the edge of the detector. This was achieved by using a few flavors of almost identical analog pixels (minimal variation in layout) to allow for peripheral biasing blocks to be placed within pixels. The 1024 pixels within a digital sub-chip array have a variety of full custom, semi-custom and automated timing driven functional blocks placed together. The methodology uses a modified mixed-mode on-top digital implementation flow to not only harness the tool efficiency for timing and floor-planning but also to maintain designer control over compact parasitically aware layout. The methodology uses the Cadence design platform, however it is not limited to this tool.

  2. Design methodology: edgeless 3D ASICs with complex in-pixel processing for pixel detectors

    SciTech Connect

    Fahim Farah, Fahim Farah; Deptuch, Grzegorz W.; Hoff, James R.; Mohseni, Hooman

    2015-08-28

    The design methodology for the development of 3D integrated edgeless pixel detectors with in-pixel processing using Electronic Design Automation (EDA) tools is presented. A large area 3 tier 3D detector with one sensor layer and two ASIC layers containing one analog and one digital tier, is built for x-ray photon time of arrival measurement and imaging. A full custom analog pixel is 65μm x 65μm. It is connected to a sensor pixel of the same size on one side, and on the other side it has approximately 40 connections to the digital pixel. A 32 x 32 edgeless array without any peripheral functional blocks constitutes a sub-chip. The sub-chip is an indivisible unit, which is further arranged in a 6 x 6 array to create the entire 1.248cm x 1.248cm ASIC. Each chip has 720 bump-bond I/O connections, on the back of the digital tier to the ceramic PCB. All the analog tier power and biasing is conveyed through the digital tier from the PCB. The assembly has no peripheral functional blocks, and hence the active area extends to the edge of the detector. This was achieved by using a few flavors of almost identical analog pixels (minimal variation in layout) to allow for peripheral biasing blocks to be placed within pixels. The 1024 pixels within a digital sub-chip array have a variety of full custom, semi-custom and automated timing driven functional blocks placed together. The methodology uses a modified mixed-mode on-top digital implementation flow to not only harness the tool efficiency for timing and floor-planning but also to maintain designer control over compact parasitically aware layout. The methodology uses the Cadence design platform, however it is not limited to this tool.

  3. 3D Boltzmann Simulation of the Io's Plasma Environment: Comparison with Observational Data

    NASA Astrophysics Data System (ADS)

    Combi, M. R.; Lipatov, A. S.

    2003-12-01

    The global dynamics of the ionized and neutral components in the environment of Io plays an important role in the interaction of Jupiter's corotating magnetospheric plasma with Io [Combi et al., 2002; 1998; Kabin et al., 2001]. The stationary simulation of this problem was done in the MHD [Combi et al., 1998; Linker et al, 1998; Kabin et al., 2001] and the electrodynamic [Saur et al., 1999; 2003] approaches. In this report, we study the comparative role of ionization processes and charge exchange in formation of the plasma environment near Io by means of kinetic simulation. The atmosphere of Io is considered as an immobile obstacle in simulation. The comparison of results of such simulations with the Galileo spacecraft data is also discussed in this report. ~ M R Combi et al., J. Geophys. Res., 103, 9071, 1998. M R Combi, T I Gombosi, K Kabin, Atmospheres in the Solar System: Comparative\\ Aeronomy. Geophys. Monograph Series, 130, 151, 2002. K Kabin et al., Planetary and Space Sci., 49, 337, 2001. J A Linker et al., J. Geophys. Res., 103(E9), 19867, 1998. J Saur et al., J. Geophys. Res., 104, 25105, 1999. J Saur et al., ICARUS, 163, 456, 2003.

  4. 3D magnetic field configuration of small-scale reconnection events in the solar plasma atmosphere

    SciTech Connect

    Shimizu, T.

    2015-10-15

    The outer solar atmosphere, i.e., the corona and the chromosphere, is replete with small energy-release events, which are accompanied by transient brightening and jet-like ejections. These events are considered to be magnetic reconnection events in the solar plasma, and their dynamics have been studied using recent advanced observations from the Hinode spacecraft and other observatories in space and on the ground. These events occur at different locations in the solar atmosphere and vary in their morphology and amount of the released energy. The magnetic field configurations of these reconnection events are inferred based on observations of magnetic fields at the photospheric level. Observations suggest that these magnetic configurations can be classified into two groups. In the first group, two anti-parallel magnetic fields reconnect to each other, yielding a 2D emerging flux configuration. In the second group, helical or twisted magnetic flux tubes are parallel or at a relative angle to each other. Reconnection can occur only between anti-parallel components of the magnetic flux tubes and may be referred to as component reconnection. The latter configuration type may be more important for the larger class of small-scale reconnection events. The two types of magnetic configurations can be compared to counter-helicity and co-helicity configurations, respectively, in laboratory plasma collision experiments.

  5. A DFT-chemotopological study on the 3D transition metal oxides and dioxygen complexes

    NASA Astrophysics Data System (ADS)

    Trujillo-González, Daniel E.; Ramírez-Romero, María C.; Rodríguez, Juan I.; Uribe, Emilbus A.

    2016-04-01

    Density functional theory unrestricted calculations at the BPW91/6-311+G* level of theory have been used to explore the potential energy surface of MOn complexes (M = Sc-Zn, n = 1-2). Nine physico-chemical properties were selected to characterize each of the MOn complexes to conduct a chemotopological study. Our results show that the similarity relations between the group-VIIIB elements (Fe, Co and Ni) are transferred to their corresponding MOn complexes. A classification of Msbnd O interactions in the MOn complexes based on the QTAIM methodology is introduced.

  6. Space Plasma Slab Studies using a new 3D Embedded Reconfigurable MPSoC Sounder

    NASA Astrophysics Data System (ADS)

    Dekoulis, George

    2016-07-01

    This paper presents recent ionospheric slab thickness measurements using a new mobile digital sounder system. The datasets obtained have been compared to the results of existing sounders in operation. The data validity has been verified. The slab thickness data allow constant monitoring of the lower ionosphere revealing the dynamic trends of the physical processes being involved. The prototype offers a tremendous amount of hardware processing power and a previously unseen response time in servicing the input and output data interfaces. This has been enabled by incorporating the latest three-dimensional Ultrascale+ technologies available commercially from the reconfigurable Field Programmable Gate Array (FPGA) computing industry. Furthermore, a previously developed Network-on-Chip (NoC) design methodology has been incorporated for connecting and controlling the application driven multiprocessor network. The system determines electron distributions, aggregate electromagnetic field gradients and plasma current density.

  7. Optical Coherence Tomography Noise Reduction Using Anisotropic Local Bivariate Gaussian Mixture Prior in 3D Complex Wavelet Domain

    PubMed Central

    Sonka, Milan; Abramoff, Michael D.

    2013-01-01

    In this paper, MMSE estimator is employed for noise-free 3D OCT data recovery in 3D complex wavelet domain. Since the proposed distribution for noise-free data plays a key role in the performance of MMSE estimator, a priori distribution for the pdf of noise-free 3D complex wavelet coefficients is proposed which is able to model the main statistical properties of wavelets. We model the coefficients with a mixture of two bivariate Gaussian pdfs with local parameters which are able to capture the heavy-tailed property and inter- and intrascale dependencies of coefficients. In addition, based on the special structure of OCT images, we use an anisotropic windowing procedure for local parameters estimation that results in visual quality improvement. On this base, several OCT despeckling algorithms are obtained based on using Gaussian/two-sided Rayleigh noise distribution and homomorphic/nonhomomorphic model. In order to evaluate the performance of the proposed algorithm, we use 156 selected ROIs from 650 × 512 × 128 OCT dataset in the presence of wet AMD pathology. Our simulations show that the best MMSE estimator using local bivariate mixture prior is for the nonhomomorphic model in the presence of Gaussian noise which results in an improvement of 7.8 ± 1.7 in CNR. PMID:24222760

  8. Simultaneous measurement of 3D zooplankton trajectories and surrounding fluid velocity field in complex flows.

    PubMed

    Adhikari, Deepak; Gemmell, Brad J; Hallberg, Michael P; Longmire, Ellen K; Buskey, Edward J

    2015-11-01

    We describe an automated, volumetric particle image velocimetry (PIV) and tracking method that measures time-resolved, 3D zooplankton trajectories and surrounding volumetric fluid velocity fields simultaneously and non-intrusively. The method is demonstrated for groups of copepods flowing past a wall-mounted cylinder. We show that copepods execute escape responses when subjected to a strain rate threshold upstream of a cylinder, but the same threshold range elicits no escape responses in the turbulent wake downstream. The method was also used to document the instantaneous slip velocity of zooplankton and the resulting differences in trajectory between zooplankton and non-inertial fluid particles in the unsteady wake flow, showing the method's capability to quantify drift for both passive and motile organisms in turbulent environments. Applications of the method extend to any group of organisms interacting with the surrounding fluid environment, where organism location, larger-scale eddies and smaller-scale fluid deformation rates can all be tracked and analyzed. PMID:26486364

  9. From Voxels to Knowledge: A Practical Guide to the Segmentation of Complex Electron Microscopy 3D-Data

    PubMed Central

    Tsai, Wen-Ting; Hassan, Ahmed; Sarkar, Purbasha; Correa, Joaquin; Metlagel, Zoltan; Jorgens, Danielle M.; Auer, Manfred

    2014-01-01

    Modern 3D electron microscopy approaches have recently allowed unprecedented insight into the 3D ultrastructural organization of cells and tissues, enabling the visualization of large macromolecular machines, such as adhesion complexes, as well as higher-order structures, such as the cytoskeleton and cellular organelles in their respective cell and tissue context. Given the inherent complexity of cellular volumes, it is essential to first extract the features of interest in order to allow visualization, quantification, and therefore comprehension of their 3D organization. Each data set is defined by distinct characteristics, e.g., signal-to-noise ratio, crispness (sharpness) of the data, heterogeneity of its features, crowdedness of features, presence or absence of characteristic shapes that allow for easy identification, and the percentage of the entire volume that a specific region of interest occupies. All these characteristics need to be considered when deciding on which approach to take for segmentation. The six different 3D ultrastructural data sets presented were obtained by three different imaging approaches: resin embedded stained electron tomography, focused ion beam- and serial block face- scanning electron microscopy (FIB-SEM, SBF-SEM) of mildly stained and heavily stained samples, respectively. For these data sets, four different segmentation approaches have been applied: (1) fully manual model building followed solely by visualization of the model, (2) manual tracing segmentation of the data followed by surface rendering, (3) semi-automated approaches followed by surface rendering, or (4) automated custom-designed segmentation algorithms followed by surface rendering and quantitative analysis. Depending on the combination of data set characteristics, it was found that typically one of these four categorical approaches outperforms the others, but depending on the exact sequence of criteria, more than one approach may be successful. Based on these data

  10. Construction of Neuroanatomical Shape Complex Atlas from 3D Brain MRI

    PubMed Central

    Chen, Ting; Rangarajan, Anand; Eisenschenk, Stephan J.; Vemuri, Baba C.

    2010-01-01

    This paper proposes a novel technique for constructing a neuroanatomical shape complex atlas using an information geometry framework. A shape complex is a collection of shapes in a local neighborhood. We represent the boundary of the entire shape complex using the zero level set of a distance function S(x). The spatial relations between the different anatomical structures constituting the shape complex are captured via the distance transform. We then leverage the well known relationship between the stationary state wave function ψ(x) of the Schrödinger equation −ħ2∇2ψ + ψ = 0 and the eikonal equation ‖∇S‖ = 1 satisfied by any distance function S(x). This leads to a one-to-one map between ψ(x) and S(x) and allows for recovery of S(x) from ψ(x) through an explicit mathematical relationship. Since the wave function can be regarded as a square-root density function, we are able to exploit this connection and convert shape complex distance transforms into probability density functions. Furthermore, square-root density functions can be seen as points on a unit hypersphere whose Riemannian structure is fully known. A shape complex atlas is constructed by first computing the Karcher mean ψ̄(x) of the wave functions, followed by an inverse mapping of the estimated mean back to the space of distance transforms in order to realize the atlas. We demonstrate the shape complex atlas computation via a set of experiments on a population of brain MRI scans. We also present modes of variation from the computed atlas for the control population to demonstrate the shape complex variability. PMID:20879384

  11. Construction of neuroanatomical shape complex atlas from 3D brain MRI.

    PubMed

    Chen, Ting; Rangarajan, Anand; Eisenschenk, Stephan J; Vemuri, Baba C

    2010-01-01

    This paper proposes a novel technique for constructing a neuroanatomical shape complex atlas using an information geometry framework. A shape complex is a collection of shapes in a local neighborhood. We represent the boundary of the entire shape complex using the zero level set of a distance function S(x). The spatial relations between the different anatomical structures constituting the shape complex are captured via the distance transform. We then leverage the well known relationship between the stationary state wave function psi(x) of the Schrödinger equation -h2nabla2 psi + psi = 0 and the eikonal equation //nablaS// = 1 satisfied by any distance function S(x). This leads to a one-to-one map between psi(x) and S(x) and allows for recovery of S(x) from psi(x) through an explicit mathematical relationship. Since the wave function can be regarded as a square-root density function, we are able to exploit this connection and convert shape complex distance transforms into probability density functions. Furthermore, square-root density functions can be seen as points on a unit hypersphere whose Riemannian structure is fully known. A shape complex atlas is constructed by first computing the Karcher mean psi(x) of the wave functions, followed by an inverse mapping of the estimated mean back to the space of distance transforms in order to realize the atlas. We demonstrate the shape complex atlas computation via a set of experiments on a population of brain MRI scans. We also present modes of variation from the computed atlas for the control population to demonstrate the shape complex variability. PMID:20879384

  12. 3D Boltzmann Simulation of the Io's Plasma Environment with Adaptive Mesh and Particle Refinement

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Combi, M. R.

    2002-12-01

    The global dynamics of the ionized and neutral components in the environment of Io plays an important role in the interaction of Jupiter's corotating magnetospheric plasma with Io [Combi et al., 2002; 1998; Kabin et al., 2001]. The stationary simulation of this problem was done in the MHD [Combi et al., 1998; Linker et al, 1998; Kabin et al., 2001] and the electrodynamic [Saur et al., 1999] approaches. In this report, we develop a method of kinetic ion-neutral simulation, which is based on a multiscale adaptive mesh, particle and algorithm refinement. This method employs the fluid description for electrons whereas for ions the drift-kinetic and particle approaches are used. This method takes into account charge-exchange and photoionization processes. The first results of such simulation of the dynamics of ions in the Io's environment are discussed in this report. ~ M R Combi et al., J. Geophys. Res., 103, 9071, 1998. M R Combi, T I Gombosi, K Kabin, Atmospheres in the Solar System: Comparative\\ Aeronomy. Geophys. Monograph Series, 130, 151, 2002. K Kabin et al., Planetary and Space Sci., 49, 337, 2001. J A Linker et al., J. Geophys. Res., 103(E9), 19867, 1998. J Saur et al., J. Geophys. Res., 104, 25105, 1999.

  13. Effects of Kinetic Processes in Shaping Io's Global Plasma Environment: A 3D Hybrid Model

    NASA Technical Reports Server (NTRS)

    Lipatov, Alexander S.; Combi, Michael R.

    2004-01-01

    The global dynamics of the ionized and neutral components in the environment of Io plays an important role in the interaction of Jupiter's corotating magnetospheric plasma with Io. The stationary simulation of this problem was done in the MHD and the electrodynamics approaches. One of the main significant results from the simplified two-fluid model simulations was a production of the structure of the double-peak in the magnetic field signature of the I0 flyby that could not be explained by standard MHD models. In this paper, we develop a method of kinetic ion simulation. This method employs the fluid description for electrons and neutrals whereas for ions multilevel, drift-kinetic and particle, approaches are used. We also take into account charge-exchange and photoionization processes. Our model provides much more accurate description for ion dynamics and allows us to take into account the realistic anisotropic ion distribution that cannot be done in fluid simulations. The first results of such simulation of the dynamics of ions in the Io's environment are discussed in this paper.

  14. Effects of kinetic processes in shaping Io's global plasma environment: A 3D hybrid model

    NASA Astrophysics Data System (ADS)

    Lipatov, Alexander S.; Combi, Michael R.

    2006-02-01

    The global dynamics of the ionized and neutral gases in the environment of Io plays an important role in the interaction of Jupiter's corotating magnetospheric plasma with Io. Stationary simulations of this problem have already been done using the magnetohydrodynamics (MHD) and the electrodynamics approaches. One of the major results of recent simplified two-fluid model simulations [Saur, J., Neubauer, F.M., Strobel, D.F., Summers, M.E., 2002. J. Geophys. Res. 107 (SMP5), 1-18] was the production of the structure of the double-peak in the magnetic field signature of the I0 flyby. These could not be explained before by standard MHD models. In this paper, we present a hybrid simulation for Io with kinetic ions and fluid electrons. This method employs a fluid description for electrons and neutrals, whereas for ions a particle approach is used. We also take into account charge-exchange and photoionization processes and solve self-consistently for electric and magnetic fields. Our model may provide a much more accurate description for the ion dynamics than previous approaches and allows us to account for the realistic anisotropic ion velocity distribution that cannot be done in fluid simulations with isotropic temperatures. The first results of such a simulation of the dynamics of ions in Io's environment are discussed in this paper. Comparison with the Galileo I0 flyby results shows that this approach provides an accurate physical basis for the interaction and can therefore naturally reproduce all the observed salient features.

  15. Effects of Kinetic Processes in Shaping Io's Global Plasma Environment: A 3D Hybrid Model

    NASA Technical Reports Server (NTRS)

    Lipatov, Alexander S.; Combi, Michael R.

    2006-01-01

    The global dynamics of the ionized and neutral gases in the environment of Io plays an important role in the interaction of Jupiter s corotating magnetospheric plasma with Io. Stationary simulations of this problem have already been done using the magnetohydrodynamics (MHD) and the electrodynamics approaches. One of the major results of recent simplified two-fluid model simulations [Saur, J., Neubauer, F.M., Strobel, D.F., Summers, M.E., 2002. J. Geophys. Res. 107 (SMP5), 1-18] was the production of the structure of the double-peak in the magnetic field signature of the Io flyby. These could not be explained before by standard MHD models. In this paper, we present a hybrid simulation for Io with kinetic ions and fluid electrons. This method employs a fluid description for electrons and neutrals, whereas for ions a particle approach is used. We also take into account charge-exchange and photoionization processes and solve self-consistently for electric and magnetic fields. Our model may provide a much more accurate description for the ion dynamics than previous approaches and allows us to account for the realistic anisotropic ion velocity distribution that cannot be done in fluid simulations with isotropic temperatures. The first results of such a simulation of the dynamics of ions in Io s environment are discussed in this paper. Comparison with the Galileo IO flyby results shows that this approach provides an accurate physical basis for the interaction and can therefore naturally reproduce all the observed salient features.

  16. Codif: A 3-d Plasma Analyzer With Time-of-flight Mass Discrimination

    NASA Astrophysics Data System (ADS)

    Klecker, B.; Möbius, E.; Kistler, L. M.; Popecki, M. A.; Sauvaud, J.-A.; Reme, H.; Korth, A.; McFadden, J. P.; McCarthy, M. P.; Balsiger, H.

    The development of CODIF (COmposition and DIstribution Function Analyzer) for the CLUSTER mission started in 1988, shortly after the pioneering application of the secondary-electron-emission time-of-flight technique on several missions, includ- ing AMPTE and Giotto. CODIF consists of a toroidal top-hat electrostatic analyzer (ESA), subdivided into 2 halves with geometric factors different by a factor of 100 to cope with the large dynamic range of ion fluxes in the Earth's magnetosphere. Post acceleration of the incoming ions by up to 20 kV, and a time-of-flight mass spectro- graph provide velocity measurements from eV (spacecraft potential) to 40 keV/e and, together with the E/q measurement of the ESA system, a resolution sufficient to sep- arate the most abundant ions H+, He2+, He+, and O+ by onboard analysis. Similar versions of CODIF have now been successfully flown onboard FAST, Equator-S, and CLUSTER-II. The CODIF sensor concept presently serves also as the basis for a new development for the Plasma and Suprathermal Ion Composition (PLASTIC) sensor onboard STEREO. We will discuss the in-flight performance of the CODIF sensor using recent measurements in various regions of the Earth's magnetosphere.

  17. 3D point cloud classification of complex natural scenes using a multi-scale dimensionality criterion: applications in geomorphology

    NASA Astrophysics Data System (ADS)

    Brodu, N.; Lague, D.

    2012-04-01

    3D point clouds derived from Terrestrial laser scanner (TLS) and photogrammetry are now frequently used in geomorphology to achieve greater precision and completeness in surveying natural environments than what was feasible a few years ago. Yet, scientific exploitation of these large and complex 3D data sets remains difficult and would benefit from automated classification procedures that could pre-process the raw point cloud data. Typical examples of applications are the separation of vegetation from ground or cliff outcrops, the distinction between fresh rock surfaces and rockfall, the classification of flat or rippled bed, and more generally the classification of 3D surfaces according to their morphology directly in the native point cloud data organization rather than after a sometime cumbersome meshing or gridding phase. Yet developing such classification procedures remains difficult because of the 3D nature of the data generated from ground based systems (as opposed to the 2.5D nature of aerial lidar data) and the heterogeneity and complexity of natural surfaces. We present a new software suite (CANUPO) that can classify raw point clouds in 3D based on a new geometrical measure: the multi-scale dimensionality. This method exploits the multi-resolution characteristics high-resolution datasets covering scales ranging from a few centimeters to hundred of meters. The dimensionality characterizes the local 3D organization of the point cloud within spheres centered on the measured points and varies from being 1D (points set along a line), 2D (points forming a plane) to the full 3D volume. By varying the diameter of the sphere, we track how the local cloud geometry behaves across scales (typically ranging from 5 cm to 1 m). We present the technique and illustrate its efficiency on two examples : separating riparian vegetation from ground, and classifying a steep mountain stream as vegetation, rock, gravel or water surface. In these two cases, separating the

  18. Efficient near-real-time monitoring of 3D surface displacements in complex landslide scenarios

    NASA Astrophysics Data System (ADS)

    Allasia, Paolo; Manconi, Andrea; Giordan, Daniele; Baldo, Marco; Lollino, Giorgio

    2013-04-01

    Ground deformation measurements play a key role in monitoring activities of landslides. A wide spectrum of instruments and methods is nowadays available, going from in-situ to remote sensing approaches. In emergency scenarios, monitoring is often based on automated instruments capable to achieve accurate measurements, possibly with a very high temporal resolution, in order to achieve the best information about the evolution of the landslide in near-real-time, aiming at early warning purposes. However, the available tools for a rapid and efficient exploitation, understanding and interpretation of the retrieved measurements is still a challenge. This issue is particularly relevant in contexts where monitoring is fundamental to support early warning systems aimed at ensuring safety to people and/or infrastructures. Furthermore, in many cases the results obtained might be of difficult reading and divulgation, especially when people of different backgrounds are involved (e.g. scientists, authorities, civil protection operators, decision makers, etc.). In this work, we extend the concept of automatic and near real time from the acquisition of measurements to the data processing and divulgation, in order to achieve an efficient monitoring of surface displacements in landslide scenarios. We developed an algorithm that allows to go automatically and in near-real-time from the acquisition of 3D displacements on a landslide area to the efficient divulgation of the monitoring results via WEB. This set of straightforward procedures is called ADVICE (ADVanced dIsplaCement monitoring system for Early warning), and has been already successfully applied in several emergency scenarios. The algorithm includes: (i) data acquisition and transfer protocols; (ii) data collection, filtering, and validation; (iii) data analysis and restitution through a set of dedicated software, such as ©3DA [1]; (iv) recognition of displacement/velocity threshold and early warning (v) short term

  19. Construction of a neuroanatomical shape complex atlas from 3D MRI brain structures.

    PubMed

    Chen, Ting; Rangarajan, Anand; Eisenschenk, Stephan J; Vemuri, Baba C

    2012-04-15

    Brain atlas construction has attracted significant attention lately in the neuroimaging community due to its application to the characterization of neuroanatomical shape abnormalities associated with various neurodegenerative diseases or neuropsychiatric disorders. Existing shape atlas construction techniques usually focus on the analysis of a single anatomical structure in which the important inter-structural information is lost. This paper proposes a novel technique for constructing a neuroanatomical shape complex atlas based on an information geometry framework. A shape complex is a collection of neighboring shapes - for example, the thalamus, amygdala and the hippocampus circuit - which may exhibit changes in shape across multiple structures during the progression of a disease. In this paper, we represent the boundaries of the entire shape complex using the zero level set of a distance transform function S(x). We then re-derive the relationship between the stationary state wave function ψ(x) of the Schrödinger equation [formula in text] and the eikonal equation [formula in text] satisfied by any distance function. This leads to a one-to-one map (up to scale) between ψ(x) and S(x) via an explicit relationship. We further exploit this relationship by mapping ψ(x) to a unit hypersphere whose Riemannian structure is fully known, thus effectively turn ψ(x) into the square-root of a probability density function. This allows us to make comparisons - using elegant, closed-form analytic expressions - between shape complexes represented as square-root densities. A shape complex atlas is constructed by computing the Karcher mean ψ¯(x) in the space of square-root densities and then inversely mapping it back to the space of distance transforms in order to realize the atlas shape. We demonstrate the shape complex atlas computation technique via a set of experiments on a population of brain MRI scans including controls and epilepsy patients with either right anterior

  20. Efficient spectral and pseudospectral algorithms for 3D simulations of whistler-mode waves in a plasma

    NASA Astrophysics Data System (ADS)

    Gumerov, Nail A.; Karavaev, Alexey V.; Surjalal Sharma, A.; Shao, Xi; Papadopoulos, Konstantinos D.

    2011-04-01

    Efficient spectral and pseudospectral algorithms for simulation of linear and nonlinear 3D whistler waves in a cold electron plasma are developed. These algorithms are applied to the simulation of whistler waves generated by loop antennas and spheromak-like stationary waves of considerable amplitude. The algorithms are linearly stable and show good stability properties for computations of nonlinear waves over tens of thousands of time steps. Additional speedups by factors of 10-20 (comparing single core CPU and one GPU) are achieved by using graphics processors (GPUs), which enable efficient numerical simulation of the wave propagation on relatively high resolution meshes (tens of millions nodes) in personal computing environment. Comparisons of the numerical results with analytical solutions and experiments show good agreement. The limitations of the codes and the performance of the GPU computing are discussed.

  1. Investigation of 3D tungsten distributions in (1,1) kink modes induced by toroidal plasma rotation

    NASA Astrophysics Data System (ADS)

    Weiland, M.; Gude, A.; Igochine, V.; Maraschek, M.; Zohm, H.; Bohle, R.; Dux, R.; Lackner, K.; Odstrčil, T.; Pütterich, T.

    2015-08-01

    The presence of high-Z impurities, such as tungsten (W), can lead to non-uniform SXR radiation on flux surfaces due to the centrifugal forces in rotating plasmas. The goal of this work is to characterize the effects of such rotation-induced radiation asymmetries on FFT-based SXR mode analysis. Therefore, a synthetic SXR diagnostic has been implemented, which takes into account the full 3D geometry of the detectors, resulting in a volume integration rather than the more simplifying line integration. We have focused on resistive (1,1) kink modes, where we have implemented a model for the flux surfaces perturbed by the mode and the W distribution within. In a rotation scan, which leads to a variation of the asymmetry, a strong dependence of the FFT phase profile on the asymmetry strength is found. A comparison with experimental data shows good agreement, which verifies the used models.

  2. Managing Construction Operations Visually: 3-D Techniques for Complex Topography and Restricted Visibility

    ERIC Educational Resources Information Center

    Rodriguez, Walter; Opdenbosh, Augusto; Santamaria, Juan Carlos

    2006-01-01

    Visual information is vital in planning and managing construction operations, particularly, where there is complex terrain topography and salvage operations with limited accessibility and visibility. From visually-assessing site operations and preventing equipment collisions to simulating material handling activities to supervising remotes sites…

  3. Step-by-step assembly of 4d-4f-3d complex based on heptamolybdate anion

    SciTech Connect

    Wu, Shuting; Deng, Binbin; Jiang, Xiuling; Li, Ronghua; Guo, Jiangbin; Lai, Fulong; Huang, Xihe; Huang, Changcang

    2012-12-15

    Four new complexes, (NH{sub 4}){sub 11.9}[Ln{sub 4.7}(MoO{sub 4})(H{sub 2}O){sub 23}(Mo{sub 7}O{sub 24}){sub 4}]{center_dot}xH{sub 2}O (Ln=Pr, x=34 (1); Ln=Nd, x=19 (2)), [NH{sub 4}]{sub 28}[Ce{sub 8}(MoO{sub 4}){sub 2}(H{sub 2}O){sub 31}(Mo{sub 7}O{sub 24}){sub 8}]{center_dot}74H{sub 2}O (3), and (NH{sub 4}){sub 26}[CoPr{sub 8}(MoO{sub 4}){sub 2}(H{sub 2}O){sub 33}(Mo{sub 7}O{sub 24}){sub 8}]{center_dot}54H{sub 2}O (4) have been synthesized and characterized by single-crystal and powder X-ray diffraction, CHN elemental analyses TGA analyses, IR and UV-Vis spectroscopy. Complex 1-3 are 0D compounds constructed by the connection between Ln{sup III} ions and [Mo{sub 7}O{sub 24}]{sup 6-} unit. In complex 4, the existence of Co{sup II} connects the polyanion clusters into 1D chain. The introduction of 3d metal (cobalt cation) and 4f metal (Ln=Pr{sup III}, Nd{sup III}, Ce{sup III}) encourages the coordination capability for [Mo{sub 7}O{sub 24}]{sup 6-} unit, which shows interesting coordination modes. The [Mo{sub 7}O{sub 24}]{sup 6-} unit in 1-4 shows three new coordination modes, connecting up to four metal cations. Complexes 1-4 show antiferromagnetic behavior via variable temperature magnetic study. The photoluminescence spectrum indicates the photoluminescence property for 4. - Graphical abstract: Heptamolybdate anion shows extraordinary coordination geometry in the presence of both lanthanide cation (Pr{sup III}) and transitional metal cation (Co{sup II}), which give rise to a new 4d-4f-3d complex. Black-Small-Square Highlights: Black-Right-Pointing-Pointer A new 4d-4f-3d complex that containing 1D chain was obtained and discussed. Black-Right-Pointing-Pointer New coordination geometry with higher coordination number of heptamolybdate. Black-Right-Pointing-Pointer Series of heptamolybdate contained complexes were synthesized and characterized. Black-Right-Pointing-Pointer Complexes mentioned above show antiferromagnetic behavior.

  4. A unified 3D model for an interaction mechanism of the plasma arc, weld pool and keyhole in plasma arc welding

    NASA Astrophysics Data System (ADS)

    Jian, Xiaoxia; Wu, ChuanSong; Zhang, Guokai; Chen, Ji

    2015-11-01

    A 3D model is developed to perform numerical investigation on the coupled interaction mechanism of the plasma arc, weld pool and keyhole in plasma arc welding. By considering the traveling of the plasma arc along the welding direction, unified governing equations are solved in the whole domain including the torch, plasma arc, keyhole, weld pool and workpiece, which involves different physical mechanisms in different zones. The local thermodynamic equilibrium-diffusion approximation is used to treat the interface between the plasma arc and weld pool, and the volume-of-fluid method is used to track the evolution of the keyhole wall. The interaction effects between the plasma arc, keyhole and weld pool as well as the heat, mass and pressure transport phenomena in the whole welding domain are quantitatively simulated. It is found that when the torch is moving along the joint line, the axis of the keyhole channel tilts backward, and the envelope of molten metal surrounding the keyhole wall inside the weld pool is unsymmetrical relative to the keyhole channel. The plasma arc welding tests are conducted, and the predicted keyhole dimensions and the fusion zone shape are in agreement with the experimentally measured results.

  5. Magnetocaloric Properties of Heterometallic 3d-Gd Complexes Based on the [Gd(oda)3 ](3-) Metalloligand.

    PubMed

    Qiu, Jiang-Zhen; Wang, Long-Fei; Chen, Yan-Cong; Zhang, Ze-Min; Li, Quan-Wen; Tong, Ming-Liang

    2016-01-11

    A series of heterometallic 3d-Gd(3+) complexes based on a lanthanide metalloligand, [M(H2 O)6 ][Gd(oda)3 ]⋅3 H2 O [M=Cr(3+) (1-Cr)] (H2 oda=2,2'-oxydiacetic acid), [M(H2 O)6 ][MGd(oda)3 ]2 ⋅3 H2 O [M=Mn(2+) (2-Mn), Fe(2+) (2-Fe) and Co(2+) (2-Co)], and [M3 Gd2 (oda)6 (H2 O)6 ]⋅12 H2 O [M=Ni(2+) (3-Ni), Cu(2+) (3-Cu), and Zn(2+) (3-Zn)], are reported. Magnetic and heat-capacity studies revealed a significant impact on the magnetocaloric effect depending on the anisotropy of the 3d transition metal ions, as confirmed by comparison of the observed maximum values of -ΔSm between complexes 2-Co and 1-Cr. In these two complexes, the 3d metal ions have the same spin (S=3/2 for Co(2+) and Cr(3+) ions), and the theoretical calculation suggested a larger -ΔSm value for 2-Co (47.8 J K(-1)  kg(-1) ) than 1-Cr (37.5 J K(-1)  kg(-1) ); however, the significant anisotropy of Co(2+) ions in 2-Co, which can result in smaller effective spins, gives a smaller value of -ΔSm for 2-Co (32.2 J K(-1)  kg(-1) ) than for 1-Cr (35.4 J K(-1)  kg(-1) ) at ΔH=9 T. PMID:26636285

  6. Self-assembly of a 3d-5f trinuclear single-molecule magnet from a pentavalent uranyl complex.

    PubMed

    Chatelain, Lucile; Walsh, James P S; Pécaut, Jacques; Tuna, Floriana; Mazzanti, Marinella

    2014-12-01

    Mixed-metal uranium compounds are very attractive candidates in the design of single-molecule magnets (SMMs), but only one 3d-5f hetero-polymetallic SMM containing a uranium center is known. Herein, we report two trimeric heterodimetallic 3d-5f complexes self-assembled by cation-cation interactions between a uranyl(V) complex and a TPA-capped M(II)  complex (M=Mn (1), Cd (2); TPA=tris(2-pyridylmethyl)amine). The metal centers were strategically chosen to promote the formation of discrete molecules rather than extended chains. Compound 1, which contains an almost linear {MnOUOMn} core, exhibits SMM behavior with a relaxation barrier of 81±0.5 K-the highest reported for a mono-uranium system-arising from intramolecular Mn-U exchange interactions combined with the high Ising anisotropy of the uranyl(V) moiety. Compound 1 also exhibits an open magnetic hysteresis loop at temperatures less than 3 K, with a significant coercive field of 1.9 T at 1.8 K. PMID:25284018

  7. Increase in the energy density of the pinch plasma in 3D implosion of quasi-spherical wire arrays

    SciTech Connect

    Aleksandrov, V. V.; Gasilov, V. A.; Grabovski, E. V.; Gritsuk, A. N. Laukhin, Ya. N.; Mitrofanov, K. N.; Oleinik, G. M.; Ol’khovskaya, O. G.; Sasorov, P. V.; Smirnov, V. P.; Frolov, I. N.; Shevel’ko, A. P.

    2014-12-15

    Results are presented from experimental studies of the characteristics of the soft X-ray (SXR) source formed in the implosion of quasi-spherical arrays made of tungsten wires and metalized kapron fibers. The experiments were carried out at the Angara-5-1 facility at currents of up to 3 MA. Analysis of the spatial distribution of hard X-ray emission with photon energies above 20 keV in the pinch images taken during the implosion of quasi-spherical tungsten wire arrays (QTWAs) showed that a compact quasi-spherical plasma object symmetric with respect to the array axis formed in the central region of the array. Using a diffraction grazing incidence spectrograph, spectra of SXR emission with wavelengths of 20–400 Å from the central, axial, and peripheral regions of the emission source were measured with spatial resolutions along the array radius and height in the implosion of QTWAs. It is shown that the emission spectra of the SXR sources formed under the implosion of quasi-spherical and cylindrical tungsten wire arrays at currents of up to 3 MA have a maximum in the wavelength range of 50–150 Å. It is found that, during the implosion of a QTWA with a profiled linear mass, a redistribution of energy in the emission spectrum takes place, which indicates that, during 3D implosion, the energy of longitudinal motion of the array material additionally contributes to the radiation energy. It is also found that, at close masses of the arrays and close values of the current in the range of 2.4{sup −3} MA, the average energy density in the emission source formed during the implosion of a quasi-spherical wire array is larger by a factor of 7 than in the source formed during the implosion of a cylindrical wire array. The experimental data were compared with results of 3D simulations of plasma dynamics and radiation generation during the implosion of quasi-spherical wire arrays with a profiled mass by using the MARPLE-3D radiative magnetohydrodynamic code, developed at the

  8. Development and application of a zonal k-epsilon turbulence model for complex 3-D flowfields

    NASA Astrophysics Data System (ADS)

    Ladd, J. A.; Kral, L. D.

    1992-07-01

    A compressible, low Reynolds number two-equation turbulence model is applied to complex engineering problems. An upwind, implicit, factored algorithm with an optional TVD operator is used to solve both the mean-flow equations and the k-epsilon equations for three-dimensional turbulenct flow. A zonal approach is used for solution of both the mean flow variables and the turbulence variables. The zonal method allows complex geometries to be broken down into smaller blocks which are then computed sequentially. Several low Reynolds number k-epsilon models are implemented and validated for a subsonic and supersonic flat plate boundary layer. Calculations using the k-epsilon turbulence model are also presented for an axisymmetric jet plume, a supersonic combusting shear layer, a multislot ejector nozzle, and an F/A-18 forebody at high angle of attack. Comparison of the two-equation turbulence model results is made with results using algebraic turbulence models as well as experimental measurements. The two-equation turbulence model predicts better many of the flowfield characteristics for these complex geometries when compared with the algebraic solutions.

  9. The Locust Standard Brain: A 3D Standard of the Central Complex as a Platform for Neural Network Analysis

    PubMed Central

    el Jundi, Basil; Heinze, Stanley; Lenschow, Constanze; Kurylas, Angela; Rohlfing, Torsten; Homberg, Uwe

    2009-01-01

    Many insects use the pattern of polarized light in the sky for spatial orientation and navigation. We have investigated the polarization vision system in the desert locust. To create a common platform for anatomical studies on polarization vision pathways, Kurylas et al. (2008) have generated a three-dimensional (3D) standard brain from confocal microscopy image stacks of 10 male brains, using two different standardization methods, the Iterative Shape Averaging (ISA) procedure and the Virtual Insect Brain (VIB) protocol. Comparison of both standardization methods showed that the VIB standard is ideal for comparative volume analysis of neuropils, whereas the ISA standard is the method of choice to analyze the morphology and connectivity of neurons. The central complex is a key processing stage for polarization information in the locust brain. To investigate neuronal connections between diverse central-complex neurons, we generated a higher-resolution standard atlas of the central complex and surrounding areas, using the ISA method based on brain sections from 20 individual central complexes. To explore the usefulness of this atlas, two central-complex neurons, a polarization-sensitive columnar neuron (type CPU1a) and a tangential neuron that is activated during flight, the giant fan-shaped (GFS) neuron, were reconstructed 3D from brain sections. To examine whether the GFS neuron is a candidate to contribute to synaptic input to the CPU1a neuron, we registered both neurons into the standardized central complex. Visualization of both neurons revealed a potential connection of the CPU1a and GFS neurons in layer II of the upper division of the central body. PMID:20161763

  10. Heterobimetallic coordination polymers involving 3d metal complexes and heavier transition metals cyanometallates

    SciTech Connect

    Peresypkina, Eugenia V.; Samsonenko, Denis G.; Vostrikova, Kira E.

    2015-04-15

    The results of the first steps in the design of coordination polymers based on penta- and heptacyanometallates of heavier d transitions metals are presented. The 2D structure of the coordination polymers: [(Mn(acacen)){sub 2}Ru(NO)(CN){sub 5}]{sub n} and two complexes composed of different cyanorhenates, [Ni(cyclam)]{sub 2}[ReO(OH)(CN){sub 4}](ClO{sub 4}){sub 2}(H{sub 2}O){sub 1.25} and [Cu(cyclam)]{sub 2}[Re(CN){sub 7}](H{sub 2}O){sub 12}, was confirmed by single crystal XRD study, the rhenium oxidation state having been proved by the magnetic measurements. An amorphism of [M(cyclam)]{sub 3}[Re(CN){sub 7}]{sub 2} (M=Ni, Cu) polymers does not allow to define strictly their dimensionality and to model anisotropic magnetic behavior of the compounds. However, with high probability a honey-comb like layer structure could be expected for [M(cyclam)]{sub 3}[Re(CN){sub 7}]{sub 2} complexes, studied in this work, because such an arrangement is the most common among the bimetallic assemblies of hexa- and octacyanometallates with a ratio [M(cyclam)]/[M(CN){sub n}]=3/2. For the first time was prepared and fully characterized a precursor (n-Bu{sub 4}N){sub 2}[Ru(NO)(CN){sub 5}], soluble in organic media. - Graphical abstract: The very first results in the design of 2D coordination polymers based on penta- and heptacyanometallates of 4d and5d transitions metals are presented. - Highlights: • Design of coordination polymers based on penta- and heptacyanometallates. • New Ru and Re cyanide based heterobimetallic coordination complexes. • Hydrolysis and ox/red processes involving [Re(CN){sub 7}]{sup 3+} during crystallization. • High magnetic anisotropy of [M(cyclam)]{sub 3}[Re(CN){sub 7}]{sub 2}(H{sub 2}O){sub n}, M=Cu, Ni, complexes.

  11. Visualisation of Complex 3d City Models on Mobile Webbrowsers Using Cloud-Based Image Provisioning

    NASA Astrophysics Data System (ADS)

    Christen, M.; Nebiker, S.

    2015-08-01

    Rendering large city models with high polygon count and a vast amount of textures at interactive frame rates is a rather difficult to impossible task as it highly depends on the client hardware, which is often insufficient, even if out-of-core rendering techniques and level of detail approaches are used. Rendering complex city models on mobile devices is even more challenging. An approach of rendering and caching very large city models in the cloud using ray-tracing based image provisioning is introduced. This allows rendering large scenes efficiently, including on mobile devices. With this approach, it is possible to render cities with nearly unlimited number of polygons and textures.

  12. Heterobimetallic coordination polymers involving 3d metal complexes and heavier transition metals cyanometallates

    NASA Astrophysics Data System (ADS)

    Peresypkina, Eugenia V.; Samsonenko, Denis G.; Vostrikova, Kira E.

    2015-04-01

    The results of the first steps in the design of coordination polymers based on penta- and heptacyanometallates of heavier d transitions metals are presented. The 2D structure of the coordination polymers: [{Mn(acacen)}2Ru(NO)(CN)5]n and two complexes composed of different cyanorhenates, [Ni(cyclam)]2[ReO(OH)(CN)4](ClO4)2(H2O)1.25 and [Cu(cyclam)]2[Re(CN)7](H2O)12, was confirmed by single crystal XRD study, the rhenium oxidation state having been proved by the magnetic measurements. An amorphism of [M(cyclam)]3[Re(CN)7]2 (M=Ni, Cu) polymers does not allow to define strictly their dimensionality and to model anisotropic magnetic behavior of the compounds. However, with high probability a honey-comb like layer structure could be expected for [M(cyclam)]3[Re(CN)7]2 complexes, studied in this work, because such an arrangement is the most common among the bimetallic assemblies of hexa- and octacyanometallates with a ratio [M(cyclam)]/[M(CN)n]=3/2. For the first time was prepared and fully characterized a precursor (n-Bu4N)2[Ru(NO)(CN)5], soluble in organic media.

  13. Rigorous 3-D vectorial complex ray model applied to light scattering by an arbitrary spheroid

    NASA Astrophysics Data System (ADS)

    Sun, Bingqiang; Kattawar, George W.; Yang, Ping; Ren, Kuan Fang

    2016-08-01

    After a ray bundle passes a curved surface, the equal-phase wavefront associated with the refracted rays will be distorted. Consequently, the cross-section of a ray bundle with a curved wavefront during propagation in a homogeneous medium will vary with the ray-bundle propagation distance. Moreover, the phase of a ray bundle with convergent wavefront will undergo a phase shift of π/2 with each passage of a focal line. The contribution to the scattering amplitude by a ray bundle after passing a scatterer is determined by three elements: the cross-section variation of its wavefront, the total phase, and the refraction coefficients determined by Fresnel equations. In the geometric optics regime, the aforesaid three elements caused by a curved surface can be systematically quantified in terms of the vectorial complex ray-tracing technique. In this study, rigorous vectorial complex ray-tracing calculations are conducted for light scattering by a general spheroid and the results are validated in comparison with the benchmarks provided by the rigorous T-matrix method.

  14. Complexities of a 3-D flux rope as shown by MHD simulation

    NASA Astrophysics Data System (ADS)

    Farr, N.; Baker, D. N.; Wiltberger, M.

    2007-12-01

    This paper presents the results of a global magnetohydrodynamic (MHD) simulation of a pair of substorms on August 11, 2002. Comparisons of data with simulation results reveal an agreement regarding the sequence of events in the magnetosphere. We then present the results in the simulation of a flux rope formed during the second substorm. Unlike standard 2-D depictions of reconnection and plasmoid release during a substorm, the simulation shows a highly complex structure that has considerable winding of both closed and open field lines. Additionally the flux rope does not move tailward uniformly, but rather has a assymetric motion where the dawn flank moves tailward prior to the dusk end of the flux rope, resulting in a a skewed flux rope that runs almost downtail instead of crosstail. These features can add considerably complexity to satellites observing a flux rope structure in-situ. A single spacecraft could observe particle populations that go through a sequence of alternating open and closed field lines and spacecraft separated by small spatial distances could observe quite different populations as well.

  15. Complexities of a 3-D plasmoid flux rope as shown by an MHD simulation

    NASA Astrophysics Data System (ADS)

    Farr, N. L.; Baker, D. N.; Wiltberger, M.

    2008-12-01

    The results of a global magnetohydrodynamic (MHD) simulation of a pair of magnetospheric substorms on 11 August 2002 are presented. Comparisons of data with simulation results reveal a good agreement regarding the sequence of events during substorm development. We give particular emphasis to results in the simulation of a flux rope formed during the second substorm. Unlike standard 2-D depictions of reconnection and plasmoid release during the substorm sequence, the simulation shows a highly complex structure that has considerable winding of both closed and open field lines. Additionally, the simulated flux rope does not move tailward uniformly, but rather it has asymmetric motion in which the dawn flank portion moves tailward prior to the dusk portion of the flux rope. This results in a skewed flux rope structure that runs almost parallel to the tail axis instead of perpendicular to it. The simulation compares well with both prior flux rope simulations as well as satellite observations of flux ropes. We use the global simulation to map flux tube properties to the ionosphere, which allows the complexity of the mapping of the magnetic field structure from the tail to the ionosphere to be seen in a novel manner.

  16. Jovian Plasmas Torus Interaction with Europa. Plasma Wake Structure and Effect of Inductive Magnetic Field: 3D Hybrid Kinetic Simulation

    NASA Technical Reports Server (NTRS)

    Lipatov, A. S.; Cooper, J F.; Paterson, W. R.; Sittler, E. C., Jr.; Hartle, R. E.; Simpson, David G.

    2013-01-01

    The hybrid kinetic model supports comprehensive simulation of the interaction between different spatial and energetic elements of the Europa moon-magnetosphere system with respect to a variable upstream magnetic field and flux or density distributions of plasma and energetic ions, electrons, and neutral atoms. This capability is critical for improving the interpretation of the existing Europa flyby measurements from the Galileo Orbiter mission, and for planning flyby and orbital measurements (including the surface and atmospheric compositions) for future missions. The simulations are based on recent models of the atmosphere of Europa (Cassidy et al., 2007; Shematovich et al., 2005). In contrast to previous approaches with MHD simulations, the hybrid model allows us to fully take into account the finite gyroradius effect and electron pressure, and to correctly estimate the ion velocity distribution and the fluxes along the magnetic field (assuming an initial Maxwellian velocity distribution for upstream background ions). Photoionization, electron-impact ionization, charge exchange and collisions between the ions and neutrals are also included in our model. We consider the models with Oþ þ and Sþ þ background plasma, and various betas for background ions and electrons, and pickup electrons. The majority of O2 atmosphere is thermal with an extended non-thermal population (Cassidy et al., 2007). In this paper, we discuss two tasks: (1) the plasma wake structure dependence on the parameters of the upstream plasma and Europa's atmosphere (model I, cases (a) and (b) with a homogeneous Jovian magnetosphere field, an inductive magnetic dipole and high oceanic shell conductivity); and (2) estimation of the possible effect of an induced magnetic field arising from oceanic shell conductivity. This effect was estimated based on the difference between the observed and modeled magnetic fields (model II, case (c) with an inhomogeneous Jovian magnetosphere field, an inductive

  17. Exchange effects in Coulomb quantum plasmas: Dispersion of waves in 2D and 3D quantum plasmas

    SciTech Connect

    Andreev, Pavel A.

    2014-11-15

    We describe quantum hydrodynamic equations with the Coulomb exchange interaction for three and two dimensional plasmas. Explicit form of the force densities are derived. We present non-linear Schrödinger equations (NLSEs) for the Coulomb quantum plasmas with the exchange interaction. We show contribution of the exchange interaction in the dispersion of the Langmuir, and ion-acoustic waves. We consider influence of the spin polarization ratio on strength of the Coulomb exchange interaction. This is important since exchange interaction between particles with same spin direction and particles with opposite spin directions are different. At small particle concentrations n{sub 0}≪10{sup 25}cm{sup −3} and small polarization the exchange interaction gives small decrease of the Fermi pressure. With increase of polarization role the exchange interaction becomes more important, so that it can overcome the Fermi pressure. The exchange interaction also decreases contribution of the Langmuir frequency. Ion-acoustic waves do not exist in limit of large polarization since the exchange interaction changes the sign of pressure. At large particle concentrations n{sub 0}≫10{sup 25}cm{sup −3} the Fermi pressure prevails over the exchange interaction for all polarizations. We obtain a similar picture for two dimensional quantum plasmas.

  18. Application of the Finite Orbit Width Version of the CQL3D Code to NBI +RF Heating of NSTX Plasma

    NASA Astrophysics Data System (ADS)

    Petrov, Yu. V.; Harvey, R. W.

    2015-11-01

    The CQL3D bounce-averaged Fokker-Planck (FP) code has been upgraded to include Finite-Orbit-Width (FOW) effects. The calculations can be done either with a fast Hybrid-FOW option or with a slower but neoclassically complete full-FOW option. The banana regime neoclassical radial transport appears naturally in the full-FOW version by averaging the local collision coefficients along guiding center orbits, with a proper transformation matrix from local (R, Z) coordinates to the midplane computational coordinates, where the FP equation is solved. In a similar way, the local quasilinear rf diffusion terms give rise to additional radial transport of orbits. The full-FOW version is applied to simulation of ion heating in NSTX plasma. It is demonstrated that it can describe the physics of transport phenomena in plasma with auxiliary heating, in particular, the enhancement of the radial transport of ions by RF heating and the occurrence of the bootstrap current. Because of the bounce-averaging on the FPE, the results are obtained in a relatively short computational time. A typical full-FOW run time is 30 min using 140 MPI cores. Due to an implicit solver, calculations with a large time step (tested up to dt = 0.5 sec) remain stable. Supported by USDOE grants SC0006614, ER54744, and ER44649.

  19. Super-resolution 3D tomography of interactions and competition in the nuclear pore complex.

    PubMed

    Ma, Jiong; Goryaynov, Alexander; Yang, Weidong

    2016-03-01

    A selective barrier formed by intrinsically disordered Phe-Gly (FG) nucleoporins (Nups) allows transport receptor (TR)-facilitated translocation of signal-dependent cargos through the nuclear pore complexes (NPCs) of eukaryotic cells. However, the configuration of the FG-Nup barrier and its interactions with multiple TRs in native NPCs remain obscure. Here, we mapped the interaction sites of various TRs or FG segments within the FG-Nup barrier by using high-speed super-resolution microscopy and used these sites to reconstruct the three-dimensional tomography of the native barrier in the NPC. We found that each TR possesses a unique interaction zone within the FG-Nup barrier and that two major TRs, importin β1 and Crm1, outcompete other TRs in binding FG Nups. Moreover, TRs may alter the tomography of the FG-Nup barrier and affect one another's pathways under circumstances of heavy competition. PMID:26878241

  20. Accurate gradient approximation for complex interface problems in 3D by an improved coupling interface method

    NASA Astrophysics Data System (ADS)

    Shu, Yu-Chen; Chern, I.-Liang; Chang, Chien C.

    2014-10-01

    Most elliptic interface solvers become complicated for complex interface problems at those “exceptional points” where there are not enough neighboring interior points for high order interpolation. Such complication increases especially in three dimensions. Usually, the solvers are thus reduced to low order accuracy. In this paper, we classify these exceptional points and propose two recipes to maintain order of accuracy there, aiming at improving the previous coupling interface method [26]. Yet the idea is also applicable to other interface solvers. The main idea is to have at least first order approximations for second order derivatives at those exceptional points. Recipe 1 is to use the finite difference approximation for the second order derivatives at a nearby interior grid point, whenever this is possible. Recipe 2 is to flip domain signatures and introduce a ghost state so that a second-order method can be applied. This ghost state is a smooth extension of the solution at the exceptional point from the other side of the interface. The original state is recovered by a post-processing using nearby states and jump conditions. The choice of recipes is determined by a classification scheme of the exceptional points. The method renders the solution and its gradient uniformly second-order accurate in the entire computed domain. Numerical examples are provided to illustrate the second order accuracy of the presently proposed method in approximating the gradients of the original states for some complex interfaces which we had tested previous in two and three dimensions, and a real molecule (1D63) which is double-helix shape and composed of hundreds of atoms.

  1. Rebuilt 3D structure of the chloroplast f1 ATPase-tentoxin complex.

    PubMed

    Minoletti, Claire; Santolini, Jérôme; Haraux, Francis; Pothier, Joël; André, François

    2002-11-15

    The F1 part of the chloroplast H+ adenosine triphosphate (ATP)-synthase (CF1) strongly interacts with tentoxin, a natural fungous cyclic tetrapeptide known to inhibit the chloroplast enzyme and not the mammalian mitochondrial enzyme. Whereas the synthesis or the hydrolysis of ATP requires the stepwise rotation of the protein rotor gamma within the (alphabeta)3 crown, only one molecule of tentoxin is needed to fully inhibit the complex. With the help of an original homology modeling technique, based on robust distance geometry protocols, we built a tridimensional model of the alpha3beta3gamma CF1) subcomplex (3200 esidues), in which we introduced three different nucleotide occupancies to check their possible influence on the tentoxin binding site. Simultaneous comparison of three available high-resolution X-ray structures of F1, performed with a local structural alignment search tool, led to characterizing common structural blocks and the distorsions experienced by the complex during the catalytic turnover. The common structural blocks were used as a starting point of the spinach CF1 structure rebuilding. Finally, tentoxin was docked into its putative binding site of the reconstructed structure. The docking method was initially validated in the mitochondrial enzyme by its ability to relocate nucleotides into their original position in the crystal. Tentoxin binding was found possible to the two alpha/beta interfaces associated with the empty and adenosine diphosphate (ADP)-loaded catalytic sites, but not to the one associated with the ATP-loaded site. These results suggest a mechanism of CF1 inhibition by one molecule of tentoxin, by the impossibility of the alpha/beta interface bearing tentoxin to pass through the ATP-loaded state. PMID:12360520

  2. Accurate gradient approximation for complex interface problems in 3D by an improved coupling interface method

    SciTech Connect

    Shu, Yu-Chen; Chern, I-Liang; Chang, Chien C.

    2014-10-15

    Most elliptic interface solvers become complicated for complex interface problems at those “exceptional points” where there are not enough neighboring interior points for high order interpolation. Such complication increases especially in three dimensions. Usually, the solvers are thus reduced to low order accuracy. In this paper, we classify these exceptional points and propose two recipes to maintain order of accuracy there, aiming at improving the previous coupling interface method [26]. Yet the idea is also applicable to other interface solvers. The main idea is to have at least first order approximations for second order derivatives at those exceptional points. Recipe 1 is to use the finite difference approximation for the second order derivatives at a nearby interior grid point, whenever this is possible. Recipe 2 is to flip domain signatures and introduce a ghost state so that a second-order method can be applied. This ghost state is a smooth extension of the solution at the exceptional point from the other side of the interface. The original state is recovered by a post-processing using nearby states and jump conditions. The choice of recipes is determined by a classification scheme of the exceptional points. The method renders the solution and its gradient uniformly second-order accurate in the entire computed domain. Numerical examples are provided to illustrate the second order accuracy of the presently proposed method in approximating the gradients of the original states for some complex interfaces which we had tested previous in two and three dimensions, and a real molecule ( (1D63)) which is double-helix shape and composed of hundreds of atoms.

  3. Effective declutter of complex flight displays using stereoptic 3-D cueing

    NASA Technical Reports Server (NTRS)

    Parrish, Russell V.; Williams, Steven P.; Nold, Dean E.

    1994-01-01

    The application of stereo technology to new, integrated pictorial display formats has been effective in situational awareness enhancements, and stereo has been postulated to be effective for the declutter of complex informational displays. This paper reports a full-factorial workstation experiment performed to verify the potential benefits of stereo cueing for the declutter function in a simulated tracking task. The experimental symbology was designed similar to that of a conventional flight director, although the format was an intentionally confused presentation that resulted in a very cluttered dynamic display. The subject's task was to use a hand controller to keep a tracking symbol, an 'X', on top of a target symbol, another X, which was being randomly driven. In the basic tracking task, both the target symbol and the tracking symbol were presented as red X's. The presence of color coding was used to provide some declutter, thus making the task more reasonable to perform. For this condition, the target symbol was coded red, and the tracking symbol was coded blue. Noise conditions, or additional clutter, were provided by the inclusion of randomly moving, differently colored X symbols. Stereo depth, which was hypothesized to declutter the display, was utilized by placing any noise in a plane in front of the display monitor, the tracking symbol at screen depth, and the target symbol behind the screen. The results from analyzing the performances of eight subjects revealed that the stereo presentation effectively offsets the cluttering effects of both the noise and the absence of color coding. The potential of stereo cueing to declutter complex informational displays has therefore been verified; this ability to declutter is an additional benefit from the application of stereoptic cueing to pictorial flight displays.

  4. High resolution 3D ERT to help GPR data interpretation for researching archaeological items in a geologically complex subsurface

    NASA Astrophysics Data System (ADS)

    Negri, S.; Leucci, G.; Mazzone, F.

    2008-09-01

    Muro Leccese (Lecce) contains one the most important Messapian archaeological sites in southern Italy. The archaeological interest of the site arises from the discovery of the remains of Messapian walls, tombs, roads, etc. (4th-2nd centuries BC) in the neighbourhood. The archaeological remains were found at about 0.3 m depth. At present the site belongs to the municipality, which intends to build a new sewer network through it. The risk of destroying potentially interesting ancient archaeological structures during the works prompted an archaeological survey of the area. The relatively large dimensions of the area (almost 10,000 m 2), together with time and cost constraints, made it necessary to use geophysical investigations as a faster means to ascertain the presence of archaeological items. Since the most important targets were expected to be located at a soil depth of about 0.3 m, a ground-penetrating radar (GPR) survey was carried out in an area located near the archaeological excavations. Unfortunately the geological complexity did not allow an easy interpretation of the GPR data. Therefore a 3D electrical resistivity tomography (ERT) scan was conducted in order to resolve these interpretation problems. A three-way comparison of the results of the dense ERT measurements parallel to the x axis, the results of the measurements parallel to the y axis and the combined results was performed. Subsequently the synthetic model approach was used to provide a better characterization of the resistivity anomalies visible on the ERT field data. The 3D inversion results clearly illustrate the capability to resolve in view of quality 3D structures of archaeological interest. According to the presented data the inversion models along one direction ( x or y) seems to be adequate in reconstructing the subsurface structures. Naturally field data produce good quality reconstructions of the archaeological features only if the x-line and y-line measurements are considered together

  5. Iterative methods for 3D implicit finite-difference migration using the complex Padé approximation

    NASA Astrophysics Data System (ADS)

    Costa, Carlos A. N.; Campos, Itamara S.; Costa, Jessé C.; Neto, Francisco A.; Schleicher, Jörg; Novais, Amélia

    2013-08-01

    Conventional implementations of 3D finite-difference (FD) migration use splitting techniques to accelerate performance and save computational cost. However, such techniques are plagued with numerical anisotropy that jeopardises the correct positioning of dipping reflectors in the directions not used for the operator splitting. We implement 3D downward continuation FD migration without splitting using a complex Padé approximation. In this way, the numerical anisotropy is eliminated at the expense of a computationally more intensive solution of a large-band linear system. We compare the performance of the iterative stabilized biconjugate gradient (BICGSTAB) and that of the multifrontal massively parallel direct solver (MUMPS). It turns out that the use of the complex Padé approximation not only stabilizes the solution, but also acts as an effective preconditioner for the BICGSTAB algorithm, reducing the number of iterations as compared to the implementation using the real Padé expansion. As a consequence, the iterative BICGSTAB method is more efficient than the direct MUMPS method when solving a single term in the Padé expansion. The results of both algorithms, here evaluated by computing the migration impulse response in the SEG/EAGE salt model, are of comparable quality.

  6. β-1,3-D-glucan schizophyllan/poly(dA) triple-helical complex in dilute solution.

    PubMed

    Sanada, Yusuke; Matsuzaki, Tsubasa; Mochizuki, Shinichi; Okobira, Tadashi; Uezu, Kazuya; Sakurai, Kazuo

    2012-01-12

    A certain length of poly(deoxyadenylic acid) (dA(X)) can form a novel complex with β-1,3-D-glucan schizophyllan (SPG) with a stoichiometric composition of one dA binding two main chain glucoses. We measured dilute solution properties for the complex with light and small-angle X-ray scattering as well as intrinsic viscosity and found that the complex behaves as a semiflexible rod without branching or cross-linking. We analyzed the data with the wormlike cylinder model, and the chain dimensions and the persistence length for the complexes were consistently determined. The chain flexibility was reduced to almost 25% upon complexation for dA/SPG and to 15% for S-dA/SPG, where S-dA denotes the phosphorothioated DNA analogue. The changes in the molar mass per unit length and the diameter indicated that the helix was elongated or stretched along the axis direction upon the complexation. PMID:22087815

  7. Morphogenesis and mechanostabilization of complex natural and 3D printed shapes

    PubMed Central

    Tiwary, Chandra Sekhar; Kishore, Sharan; Sarkar, Suman; Mahapatra, Debiprosad Roy; Ajayan, Pulickel M.; Chattopadhyay, Kamanio

    2015-01-01

    The natural selection and the evolutionary optimization of complex shapes in nature are closely related to their functions. Mechanostabilization of shape of biological structure via morphogenesis has several beautiful examples. With the help of simple mechanics-based modeling and experiments, we show an important causality between natural shape selection as evolutionary outcome and the mechanostabilization of seashells. The effect of biological growth on the mechanostabilization process is identified with examples of two natural shapes of seashells, one having a diametrically converging localization of stresses and the other having a helicoidally concentric localization of stresses. We demonstrate how the evolved shape enables predictable protection of soft body parts of the species. The effect of bioavailability of natural material is found to be a secondary factor compared to shape selectivity, where material microstructure only acts as a constraint to evolutionary optimization. This is confirmed by comparing the mechanostabilization behavior of three-dimensionally printed synthetic polymer structural shapes with that of natural seashells consisting of ceramic and protein. This study also highlights interesting possibilities in achieving a new design of structures made of ordinary materials which have bio-inspired optimization objectives. PMID:26601170

  8. Validation and Analysis of Forward Osmosis CFD Model in Complex 3D Geometries

    PubMed Central

    Gruber, Mathias F.; Johnson, Carl J.; Tang, Chuyang; Jensen, Mogens H.; Yde, Lars; Hélix-Nielsen, Claus

    2012-01-01

    In forward osmosis (FO), an osmotic pressure gradient generated across a semi-permeable membrane is used to generate water transport from a dilute feed solution into a concentrated draw solution. This principle has shown great promise in the areas of water purification, wastewater treatment, seawater desalination and power generation. To ease optimization and increase understanding of membrane systems, it is desirable to have a comprehensive model that allows for easy investigation of all the major parameters in the separation process. Here we present experimental validation of a computational fluid dynamics (CFD) model developed to simulate FO experiments with asymmetric membranes. Simulations are compared with experimental results obtained from using two distinctly different complex three-dimensional membrane chambers. It is found that the CFD model accurately describes the solute separation process and water permeation through membranes under various flow conditions. It is furthermore demonstrated how the CFD model can be used to optimize membrane geometry in such as way as to promote the mass transfer. PMID:24958428

  9. Validation and Analysis of Forward Osmosis CFD Model in Complex 3D Geometries.

    PubMed

    Gruber, Mathias F; Johnson, Carl J; Tang, Chuyang; Jensen, Mogens H; Yde, Lars; Hélix-Nielsen, Claus

    2012-01-01

    In forward osmosis (FO), an osmotic pressure gradient generated across a semi-permeable membrane is used to generate water transport from a dilute feed solution into a concentrated draw solution. This principle has shown great promise in the areas of water purification, wastewater treatment, seawater desalination and power generation. To ease optimization and increase understanding of membrane systems, it is desirable to have a comprehensive model that allows for easy investigation of all the major parameters in the separation process. Here we present experimental validation of a computational fluid dynamics (CFD) model developed to simulate FO experiments with asymmetric membranes. Simulations are compared with experimental results obtained from using two distinctly different complex three-dimensional membrane chambers. It is found that the CFD model accurately describes the solute separation process and water permeation through membranes under various flow conditions. It is furthermore demonstrated how the CFD model can be used to optimize membrane geometry in such as way as to promote the mass transfer. PMID:24958428

  10. Propagation of 3D nonlinear waves over complex bathymetry using a High-Order Spectral method

    NASA Astrophysics Data System (ADS)

    Gouin, Maïté; Ducrozet, Guillaume; Ferrant, Pierre

    2016-04-01

    Scattering of regular and irregular surface gravity waves propagating over a region of arbitrary three-dimensional varying bathymetry is considered here. The three-dimensional High-Order Spectral method (HOS) with an extension to account for a variable bathymetry is used. The efficiency of the model has been proved to be conserved even with this extension. The method is first applied to a bathymetry consisting of an elliptical lens, as used in the Vincent and Briggs (1989) experiment. Incident waves passing across the lens are transformed and a strong convergence region is observed after the elliptical mound. The wave amplification depends on the incident wave. Numerical results for regular and irregular waves are analysed and compared with other methods and experimental data demonstrating the efficiency and practical applicability of the present approach. Then the method is used to model waves propagating over a real bathymetry: the canyons of Scripps/La Jolla in California. The implementation of this complex bathymetry in the model is presented, as well as the first results achieved. They will be compared to the ones obtained with another numerical model.

  11. A parallel overset-curvilinear-immersed boundary framework for simulating complex 3D incompressible flows

    PubMed Central

    Borazjani, Iman; Ge, Liang; Le, Trung; Sotiropoulos, Fotis

    2013-01-01

    We develop an overset-curvilinear immersed boundary (overset-CURVIB) method in a general non-inertial frame of reference to simulate a wide range of challenging biological flow problems. The method incorporates overset-curvilinear grids to efficiently handle multi-connected geometries and increase the resolution locally near immersed boundaries. Complex bodies undergoing arbitrarily large deformations may be embedded within the overset-curvilinear background grid and treated as sharp interfaces using the curvilinear immersed boundary (CURVIB) method (Ge and Sotiropoulos, Journal of Computational Physics, 2007). The incompressible flow equations are formulated in a general non-inertial frame of reference to enhance the overall versatility and efficiency of the numerical approach. Efficient search algorithms to identify areas requiring blanking, donor cells, and interpolation coefficients for constructing the boundary conditions at grid interfaces of the overset grid are developed and implemented using efficient parallel computing communication strategies to transfer information among sub-domains. The governing equations are discretized using a second-order accurate finite-volume approach and integrated in time via an efficient fractional-step method. Various strategies for ensuring globally conservative interpolation at grid interfaces suitable for incompressible flow fractional step methods are implemented and evaluated. The method is verified and validated against experimental data, and its capabilities are demonstrated by simulating the flow past multiple aquatic swimmers and the systolic flow in an anatomic left ventricle with a mechanical heart valve implanted in the aortic position. PMID:23833331

  12. A 3D bioprinted complex structure for engineering the muscle-tendon unit.

    PubMed

    Merceron, Tyler K; Burt, Morgan; Seol, Young-Joon; Kang, Hyun-Wook; Lee, Sang Jin; Yoo, James J; Atala, Anthony

    2015-09-01

    Three-dimensional integrated organ printing (IOP) technology seeks to fabricate tissue constructs that can mimic the structural and functional properties of native tissues. This technology is particularly useful for complex tissues such as those in the musculoskeletal system, which possess regional differences in cell types and mechanical properties. Here, we present the use of our IOP system for the processing and deposition of four different components for the fabrication of a single integrated muscle-tendon unit (MTU) construct. Thermoplastic polyurethane (PU) was co-printed with C2C12 cell-laden hydrogel-based bioink for elasticity and muscle development on one side, while poly(ϵ-caprolactone) (PCL) was co-printed with NIH/3T3 cell-laden hydrogel-based bioink for stiffness and tendon development on the other. The final construct was elastic on the PU-C2C12 muscle side (E = 0.39 ± 0.05 MPa), stiff on the PCL-NIH/3T3 tendon side (E = 46.67 ± 2.67 MPa) and intermediate in the interface region (E = 1.03 ± 0.14 MPa). These constructs exhibited >80% cell viability at 1 and 7 d after printing, as well as initial tissue development and differentiation. This study demonstrates the versatility of the IOP system to create integrated tissue constructs with region-specific biological and mechanical characteristics for MTU engineering. PMID:26081669

  13. Multiphysics Simulations of the Complex 3D Geometry of the High Flux Isotope Reactor Fuel Elements Using COMSOL

    SciTech Connect

    Freels, James D; Jain, Prashant K

    2011-01-01

    A research and development project is ongoing to convert the currently operating High Flux Isotope Reactor (HFIR) of Oak Ridge National Laboratory (ORNL) from highly-enriched Uranium (HEU U3O8) fuel to low-enriched Uranium (LEU U-10Mo) fuel. Because LEU HFIR-specific testing and experiments will be limited, COMSOL is chosen to provide the needed multiphysics simulation capability to validate against the HEU design data and calculations, and predict the performance of the LEU fuel for design and safety analyses. The focus of this paper is on the unique issues associated with COMSOL modeling of the 3D geometry, meshing, and solution of the HFIR fuel plate and assembled fuel elements. Two parallel paths of 3D model development are underway. The first path follows the traditional route through examination of all flow and heat transfer details using the Low-Reynolds number k-e turbulence model provided by COMSOL v4.2. The second path simplifies the fluid channel modeling by taking advantage of the wealth of knowledge provided by decades of design and safety analyses, data from experiments and tests, and HFIR operation. By simplifying the fluid channel, a significant level of complexity and computer resource requirements are reduced, while also expanding the level and type of analysis that can be performed with COMSOL. Comparison and confirmation of validity of the first (detailed) and second (simplified) 3D modeling paths with each other, and with available data, will enable an expanded level of analysis. The detailed model will be used to analyze hot-spots and other micro fuel behavior events. The simplified model will be used to analyze events such as routine heat-up and expansion of the entire fuel element, and flow blockage. Preliminary, coarse-mesh model results of the detailed individual fuel plate are presented. Examples of the solution for an entire fuel element consisting of multiple individual fuel plates produced by the simplified model are also presented.

  14. 2D and 3D endoanal and translabial ultrasound measurement variation in normal postpartum measurements of the anal sphincter complex

    PubMed Central

    MERIWETHER, Kate V.; HALL, Rebecca J.; LEEMAN, Lawrence M.; MIGLIACCIO, Laura; QUALLS, Clifford; ROGERS, Rebecca G.

    2015-01-01

    Introduction Women may experience anal sphincter anatomy changes after vaginal or Cesarean delivery. Therefore, accurate and acceptable imaging options to evaluate the anal sphincter complex (ASC) are needed. ASC measurements may differ between translabial (TL-US) and endoanal ultrasound (EA-US) imaging and between 2D and 3D ultrasound. The objective of this analysis was to describe measurement variation between these modalities. Methods Primiparous women underwent 2D and 3D TL-US imaging of the ASC six months after a vaginal birth (VB) or Cesarean delivery (CD). A subset of women also underwent EA-US measurements. Measurements included the internal anal sphincter (IAS) thickness at proximal, mid, and distal levels and the external anal sphincter (EAS) at 3, 6, 9, and 12 o’clock positions as well as bilateral thickness of the pubovisceralis muscle (PVM). Results 433 women presented for US: 423 had TL-US and 64 had both TL-US and EA-US of the ASC. All IAS measurements were significantly thicker on TL-US than EA-US (all p<0.01), while EAS measurements were significantly thicker on EA-US (p<0.01). PVM measurements with 3D or 2D imaging were similar (p>0.20). On both TL-US and EA-US, there were multiple sites where significant asymmetry existed in left versus right measurements. Conclusion The ultrasound modality used to image the ASC introduces small but significant changes in measurements, and the direction of the bias depends on the muscle and location being imaged. PMID:25344221

  15. Fundamental Complex Plasma Research on Ground and under Microgravity Conditions

    NASA Astrophysics Data System (ADS)

    Thomas, Hubertus; Fortov, Vladimir; Thoma, Markus; Pustylnik, Mikhail; Lipaev, Andrey; Morfill, Gregor; Molotkov, Vladimir; Usachev, Alexander; Nosenko, Vladimir; Fink, Martin; Petrov, Oleg; Rubin-Zuzic, Milenko

    2016-07-01

    Complex (dusty) plasma is plasma containing small solid particles in the sub-mm range. Those "dust" particles are highly charged due to the collection of electrons and ions and they interact electrostatically. Depending on the charge, density, and kinetic temperature of the particles, the interaction may be strong leading to collective effects and the emergence of liquid or solid behavior. In that sense complex plasmas are perfect model systems for the investigation of fundamental processes in classical condensed matter physics since their constituent mesoscopic particles are individually observable and can be regarded as classically interacting "proxy atoms". The term "complex plasmas" is widely used in the literature to distinguish dusty plasmas composed of a weakly ionized gas and charged microparticles specially "designed" for investigations in classical condensed matter, from naturally occurring systems. Gravity influences the complex plasma, the microparticles sediment and stable systems can only be achieved through counteracting gravity with other volume forces, e.g. electric or thermophoretic force. This allows producing two-dimensional - monolayer - systems, or three-dimensional systems under stress. Only under weightlessness conditions, large and homogeneous 3D systems can be formed. Although phenomena in classical condensed matter physics are in the forefront of complex plasma research the basic know-how gained from experiments, theory and numerical simulations can be of importance for the understanding of naturally occurring dusty plasmas in space. Thus, in this presentation I will show recent work on complex plasmas from the ground and first results from the PK-4 facility onboard the International Space Station ISS. Acknowledgements: We would like to acknowledge the joint ESA-ROSCOSMOS Experiment «Plasma Kristall-4» onboard the International Space Station ISS. This work is partly supported by DLR grant 50WM1441/ 50WM1442 and by the Russian Science

  16. Dysprosium complexes with mono-/di-carboxylate ligands—From simple dimers to 2D and 3D frameworks

    SciTech Connect

    Zhang, Yingjie; Bhadbhade, Mohan; Scales, Nicholas; Karatchevtseva, Inna; Price, Jason R.; Lu, Kim; Lumpkin, Gregory R.

    2014-11-15

    Four dysprosium (Dy) single carboxylates, a formate, a propionate, a butyrate and an oxalate have been synthesized and structurally characterized. The structure of Dy(HCO{sub 2}){sub 3} (1) contains nine-fold coordinated Dy polyhedra in perfect tricapped trigonal prisms. They are linked through trigonal O atoms forming 1D pillars which are further linked together through tricapped O atoms into a 3D pillared metal organic framework. The network structure is stable up to 360 °C. The structure of [Dy{sub 2}(C{sub 2}O{sub 4}){sub 3}(H{sub 2}O){sub 6}]·2.5H{sub 2}O (2) contains nine-fold coordinated Dy polyhedra linking together through μ{sub 2}-bridging oxalate anions into a 2D hexagonal layered structure. Both [Dy{sub 2}(Pr){sub 6}(H{sub 2}O){sub 4}]·(HPr){sub 0.5} (3) [Pr=(C{sub 2}H{sub 5}CO{sub 2}){sup −1}] and [Dy{sub 2}(Bu){sub 6}(H{sub 2}O){sub 4}] (4) [Bu=(C{sub 3}H{sub 7}CO{sub 2}){sup −1}] have similar di-nuclear structures. The Raman vibration modes of the complexes have been investigated. - Graphical abstract: Four dysprosium (Dy) complexes with formate, propionate, butyrate and oxalate ligands have been synthesized and characterized. The Dy formato complex has a 3D pillared metal organic framework and the structure is stable up to 360 °C whilst the complexes with longer alkyl chained mono-carboxylates possess similar di-nuclear structures. The Dy oxalato complex has a 2D hexagonal (honeycomb-type) structure. Their Raman vibration modes have been investigated. - Highlights: • New Dysprosium complexes with formate, propionate, butyrate and oxalate ligands. • Crystal structures range from dimers to two and three dimensional frameworks. • Vibrational modes have been investigated and correlated to the structures. • The complexes are thermal robust and stable to over 300 °C.

  17. Azo-Based Iridium(III) Complexes as Multicolor Phosphorescent Probes to Detect Hypoxia in 3D Multicellular Tumor Spheroids

    PubMed Central

    Sun, Lingli; Li, Guanying; Chen, Xiang; Chen, Yu; Jin, Chengzhi; Ji, Liangnian; Chao, Hui

    2015-01-01

    Hypoxia is an important characteristic of malignant solid tumors and is considered as a possible causative factor for serious resistance to chemo- and radiotherapy. The exploration of novel fluorescent probes capable of detecting hypoxia in solid tumors will aid tumor diagnosis and treatment. In this study, we reported the design and synthesis of a series of “off-on” phosphorescence probes for hypoxia detection in adherent and three-dimensional multicellular spheroid models. All of the iridium(III) complexes incorporate an azo group as an azo-reductase reactive moiety to detect hypoxia. Reduction of non-phosphorescent probes Ir1-Ir8 by reductases under hypoxic conditions resulted in the generation of highly phosphorescent corresponding amines for detection of hypoxic regions. Moreover, these probes can penetrate into 3D multicellular spheroids over 100 μm and image the hypoxic regions. Most importantly, these probes display a high selectivity for the detection of hypoxia in 2D cells and 3D multicellular spheroids. PMID:26423609

  18. The 3D MHD code GOEMHD3 for astrophysical plasmas with large Reynolds numbers. Code description, verification, and computational performance

    NASA Astrophysics Data System (ADS)

    Skála, J.; Baruffa, F.; Büchner, J.; Rampp, M.

    2015-08-01

    Context. The numerical simulation of turbulence and flows in almost ideal astrophysical plasmas with large Reynolds numbers motivates the implementation of magnetohydrodynamical (MHD) computer codes with low resistivity. They need to be computationally efficient and scale well with large numbers of CPU cores, allow obtaining a high grid resolution over large simulation domains, and be easily and modularly extensible, for instance, to new initial and boundary conditions. Aims: Our aims are the implementation, optimization, and verification of a computationally efficient, highly scalable, and easily extensible low-dissipative MHD simulation code for the numerical investigation of the dynamics of astrophysical plasmas with large Reynolds numbers in three dimensions (3D). Methods: The new GOEMHD3 code discretizes the ideal part of the MHD equations using a fast and efficient leap-frog scheme that is second-order accurate in space and time and whose initial and boundary conditions can easily be modified. For the investigation of diffusive and dissipative processes the corresponding terms are discretized by a DuFort-Frankel scheme. To always fulfill the Courant-Friedrichs-Lewy stability criterion, the time step of the code is adapted dynamically. Numerically induced local oscillations are suppressed by explicit, externally controlled diffusion terms. Non-equidistant grids are implemented, which enhance the spatial resolution, where needed. GOEMHD3 is parallelized based on the hybrid MPI-OpenMP programing paradigm, adopting a standard two-dimensional domain-decomposition approach. Results: The ideal part of the equation solver is verified by performing numerical tests of the evolution of the well-understood Kelvin-Helmholtz instability and of Orszag-Tang vortices. The accuracy of solving the (resistive) induction equation is tested by simulating the decay of a cylindrical current column. Furthermore, we show that the computational performance of the code scales very

  19. 3D Ion and Electron Distribution Function Measurements from the Fast Plasma Investigation on the Magnetospheric Multiscale Mission

    NASA Astrophysics Data System (ADS)

    Giles, B. L.; Pollock, C. J.; Avanov, L. A.; Barrie, A. C.; Burch, J. L.; Chandler, M. O.; Clark, G. B.; Coffey, V. N.; Dickson, C.; Dorelli, J.; Ergun, R. E.; Fuselier, S. A.; Gershman, D. J.; Gliese, U.; Holland, M. P.; Jacques, A. D.; Kreisler, S.; Lavraud, B.; MacDonald, E.; Mauk, B.; Moore, T. E.; Mukai, T.; Nakamura, R.; Paterson, W. R.; Rager, A. C.; Saito, Y.; Salo, C.; Sauvaud, J. A.; Torbert, R. B.; Vinas, A. F.; Yokota, S.

    2015-12-01

    The primary focus of the Magnetospheric Multiscale (MMS) mission, launched in March 2015, is magnetic reconnection and associated processes. Understanding hinges critically on the kinetic physics that allows reconnection to take place. The Fast Plasma Investigation (FPI) provides electron and ion distribution functions at 4.5s cadence and, for select periods of time, at cadences of 30ms for electrons and 150ms for ions. These select time periods are chosen after in situ acquisition based on inspection of the low resolution data. Thus the FPI provides, independent of spacecraft spin rate, the time resolution needed to resolve the small, fast-moving reconnection diffusion regions. The first mission phase focuses on the dayside magnetopause and this presentation is intended to demonstrate the capabilities of FPI to resolve the important spatial scales relevant to the reconnection process. Magnetopause and other boundary crossings will be examined and the phase-space trajectories identified at the tetrahedral satellite locations through analysis of the 3D distribution functions.

  20. Complex scenes and situations visualization in hierarchical learning algorithm with dynamic 3D NeoAxis engine

    NASA Astrophysics Data System (ADS)

    Graham, James; Ternovskiy, Igor V.

    2013-06-01

    We applied a two stage unsupervised hierarchical learning system to model complex dynamic surveillance and cyber space monitoring systems using a non-commercial version of the NeoAxis visualization software. The hierarchical scene learning and recognition approach is based on hierarchical expectation maximization, and was linked to a 3D graphics engine for validation of learning and classification results and understanding the human - autonomous system relationship. Scene recognition is performed by taking synthetically generated data and feeding it to a dynamic logic algorithm. The algorithm performs hierarchical recognition of the scene by first examining the features of the objects to determine which objects are present, and then determines the scene based on the objects present. This paper presents a framework within which low level data linked to higher-level visualization can provide support to a human operator and be evaluated in a detailed and systematic way.

  1. Tetrapeptide-coumarin conjugate 3D networks based on hydrogen-bonded charge transfer complexes: gel formation and dye release.

    PubMed

    Guo, Zongxia; Gong, Ruiying; Jiang, Yi; Wan, Xiaobo

    2015-08-14

    Oligopeptide-based derivatives are important synthons for bio-based functional materials. In this article, a Gly-(L-Val)-Gly-(L-Val)-coumarin (GVGV-Cou) conjugate was synthesized, which forms 3D networks in ethanol. The gel nanostructures were characterized by UV-vis spectroscopy, FT-IR spectroscopy, X-ray diffraction (XRD), SEM and TEM. It is suggested that the formation of charge transfer (CT) complexes between the coumarin moieties is the main driving force for the gel formation. The capability of the gel to encapsulate and release dyes was explored. Both Congo Red (CR) and Methylene Blue (MB) can be trapped in the CT gel matrix and released over time. The present gel might be used as a functional soft material for guest encapsulation and release. PMID:26138931

  2. Modeling Three-Phase Compositional Flow on Complex 3D Unstructured Grids with Higher-Order Finite Element Methods

    NASA Astrophysics Data System (ADS)

    Moortgat, J.; Firoozabadi, A.

    2013-12-01

    Most problems of interest in hydrogeology and subsurface energy resources involve complex heterogeneous geological formations. Such domains are most naturally represented in numerical reservoir simulations by unstructured computational grids. Finite element methods are a natural choice to describe fluid flow on unstructured meshes, because the governing equations can be readily discretized for any grid-element geometry. In this work, we consider the challenging problem of fully compositional three-phase flow in 3D unstructured grids, discretized by tetrahedra, prisms, or hexahedra, and compare to simulations on 3D structured grids. We employ a combination of mixed hybrid finite element methods to solve for the pressure and flux fields in a fractional flow formulation, and higher-order discontinuous Galerkin methods for the mass transport equations. These methods are well suited to simulate flow in heterogeneous and fractured reservoirs, because they provide a globally continuous pressure and flux field, while allowing for sharp discontinuities in the phase properties, such as compositions and saturations. The increased accuracy from using higher-order methods improves the modeling of highly non-linear flow, such as gravitational and viscous fingering. We present several numerical examples to study convergence rates and the (lack of) sensitivity to gridding/mesh orientation, and mesh quality. These examples consider gravity depletion, water and gas injection in oil saturated subsurface reservoirs with species exchange between up to three fluid phases. The examples demonstrate the wide applicability of our chosen finite element methods in the study of challenging multiphase flow problems in porous, geometrically complex, subsurface media.

  3. Selective enrichment and identification of cross-linked peptides to study 3-D structures of protein complexes by mass spectrometry.

    PubMed

    Buncherd, Hansuk; Nessen, Merel A; Nouse, Niels; Stelder, Sacha K; Roseboom, Winfried; Dekker, Henk L; Arents, Jos C; Smeenk, Linde E; Wanner, Martin J; van Maarseveen, Jan H; Yang, Xiao; Lewis, Peter J; de Koning, Leo J; de Koster, Chris G; de Jong, Luitzen

    2012-04-01

    Chemical cross-linking of protein complexes combined with mass spectrometry is a powerful approach to obtain 3-D structural information by revealing amino residues that are in close spatial proximity. To increase the efficiency of mass spectrometric analysis, we have demonstrated the selective enrichment of cross-linked peptides from the 350 kDa protein complex RNA polymerase (RNAP) from Bacillus subtilis. Bis(succinimidyl)-3-azidomethyl glutarate was used as a cross-linker along with an azide-reactive cyclooctyne-conjugated resin to capture target peptides. Subsequently released peptides were fractionated by strong cation exchange chromatography and subjected to LC-MS/MS. We mapped 10 different intersubunit and 24 intrasubunit cross-links by xComb database searching supplied with stringent criteria for confirmation of the proposed structure of candidate cross-linked peptides. The cross-links fit into a homology model of RNAP. Cross-links between β lobe 1 and the β' downstream jaw, and cross-links involving the N-terminal and C-terminal parts of the α subunits suggest conformational flexibility. The analytical strategy presented here can be applied to map protein-protein interactions at the amino acid level in biological assemblies of similar complexity. Our approach enables the exploration of alternative peptide fragmentation techniques that may further facilitate cross-link analysis. PMID:22326961

  4. A numerical method for solving the 3D unsteady incompressible Navier Stokes equations in curvilinear domains with complex immersed boundaries

    NASA Astrophysics Data System (ADS)

    Ge, Liang; Sotiropoulos, Fotis

    2007-08-01

    A novel numerical method is developed that integrates boundary-conforming grids with a sharp interface, immersed boundary methodology. The method is intended for simulating internal flows containing complex, moving immersed boundaries such as those encountered in several cardiovascular applications. The background domain (e.g. the empty aorta) is discretized efficiently with a curvilinear boundary-fitted mesh while the complex moving immersed boundary (say a prosthetic heart valve) is treated with the sharp-interface, hybrid Cartesian/immersed-boundary approach of Gilmanov and Sotiropoulos [A. Gilmanov, F. Sotiropoulos, A hybrid cartesian/immersed boundary method for simulating flows with 3d, geometrically complex, moving bodies, Journal of Computational Physics 207 (2005) 457-492.]. To facilitate the implementation of this novel modeling paradigm in complex flow simulations, an accurate and efficient numerical method is developed for solving the unsteady, incompressible Navier-Stokes equations in generalized curvilinear coordinates. The method employs a novel, fully-curvilinear staggered grid discretization approach, which does not require either the explicit evaluation of the Christoffel symbols or the discretization of all three momentum equations at cell interfaces as done in previous formulations. The equations are integrated in time using an efficient, second-order accurate fractional step methodology coupled with a Jacobian-free, Newton-Krylov solver for the momentum equations and a GMRES solver enhanced with multigrid as preconditioner for the Poisson equation. Several numerical experiments are carried out on fine computational meshes to demonstrate the accuracy and efficiency of the proposed method for standard benchmark problems as well as for unsteady, pulsatile flow through a curved, pipe bend. To demonstrate the ability of the method to simulate flows with complex, moving immersed boundaries we apply it to calculate pulsatile, physiological flow

  5. Breathing Mode in Complex Plasmas

    NASA Astrophysics Data System (ADS)

    Fujioka, K.; Henning, C.; Ludwig, P.; Bonitz, M.; Melzer, A.; Vitkalov, S.

    2007-11-01

    The breathing mode is a fundamental normal mode present in Coulomb systems, and may have utility in identifying particle charge and the Debye length of certain systems. The question remains whether this mode can be extended to strongly coupled Yukawa balls [1]. These systems are characterized by particles confined within a parabolic potential well and interacting through a shielded Coulomb potential [2,3]. The breathing modes for a variety of systems in 1, 2, and 3 dimensions are computed by solving the eigenvalue problem given by the dynamical (Hesse) matrix. These results are compared to theoretical investigations that assume a strict definition for a breathing mode within the system, and an analysis is made of the most fitting model to utilize in the study of particular systems of complex plasmas [1,4]. References [1] T.E. Sheridan, Phys. of Plasmas. 13, 022106 (2006)[2] C. Henning et al., Phys. Rev. E 74, 056403 (2006)[3] M. Bonitz et al., Phys. Rev. Lett. 96, 075001 (2006)[4] C. Henning et al., submitted for publication

  6. Genetic approach to reconstruct complex regional geological setting of the Baltic basin in 3D geological model

    NASA Astrophysics Data System (ADS)

    Popovs, K.; Saks, T.; Ukass, J.; Jatnieks, J.

    2012-04-01

    Interpretation of geological structures in 3D geological models is a relatively new research topic that is already standardized in many geological branches. Due to its wide practical application, these models are indispensable and become one of the dominant interpretation methods in reducing geological uncertainties in many geology fields. Traditionally, geological concepts complement quantitative as much as qualitative data to obtain a model deemed acceptable, however, available data very often is insufficient and modeling methods primarily focus on spatial data but geological history usually is mostly neglected for the modeling of large sedimentary basins. A need to better integrate the long and often complex geological history and geological knowledge into modeling procedure is very acute to gain geological insight and improve the quality of geological models. During this research, 3D geological model of the Baltic basin (BB) was created. Because of its complex regional geological setting - wide range of the data sources with multiple scales, resolution and density as well as its various source formats, the study area provides a challenge for the 3D geological modeling. In order to create 3D regional geometrical model for the study area algorithmic genetic approach for model geometry reconstruction was applied. The genetic approach is based on the assumption that post-depositional deformation produce no significant change in sedimentary strata volume, assuming that the strata thickness and its length in a cross sectional plane remains unchanged except as a result of erosion. Assuming that the tectonic deformation occurred in sequential cycles and subsequent tectonic stage strata is separated by regional unconformity as is the case of the BB, there is an opportunity for algorithmic approach in reconstructing these conditions by sequentially reconstructing the layer original thickness. Layer thicknesses were sliced along fault lines, where applicable layer

  7. 3D geometrical inspection of complex geometry parts using a novel laser triangulation sensor and a robot.

    PubMed

    Brosed, Francisco Javier; Aguilar, Juan José; Guillomía, David; Santolaria, Jorge

    2011-01-01

    This article discusses different non contact 3D measuring strategies and presents a model for measuring complex geometry parts, manipulated through a robot arm, using a novel vision system consisting of a laser triangulation sensor and a motorized linear stage. First, the geometric model incorporating an automatic simple module for long term stability improvement will be outlined in the article. The new method used in the automatic module allows the sensor set up, including the motorized linear stage, for the scanning avoiding external measurement devices. In the measurement model the robot is just a positioning of parts with high repeatability. Its position and orientation data are not used for the measurement and therefore it is not directly "coupled" as an active component in the model. The function of the robot is to present the various surfaces of the workpiece along the measurement range of the vision system, which is responsible for the measurement. Thus, the whole system is not affected by the robot own errors following a trajectory, except those due to the lack of static repeatability. For the indirect link between the vision system and the robot, the original model developed needs only one first piece measuring as a "zero" or master piece, known by its accurate measurement using, for example, a Coordinate Measurement Machine. The strategy proposed presents a different approach to traditional laser triangulation systems on board the robot in order to improve the measurement accuracy, and several important cues for self-recalibration are explored using only a master piece. Experimental results are also presented to demonstrate the technique and the final 3D measurement accuracy. PMID:22346569

  8. 3D Geometrical Inspection of Complex Geometry Parts Using a Novel Laser Triangulation Sensor and a Robot

    PubMed Central

    Brosed, Francisco Javier; Aguilar, Juan José; Guillomía, David; Santolaria, Jorge

    2011-01-01

    This article discusses different non contact 3D measuring strategies and presents a model for measuring complex geometry parts, manipulated through a robot arm, using a novel vision system consisting of a laser triangulation sensor and a motorized linear stage. First, the geometric model incorporating an automatic simple module for long term stability improvement will be outlined in the article. The new method used in the automatic module allows the sensor set up, including the motorized linear stage, for the scanning avoiding external measurement devices. In the measurement model the robot is just a positioning of parts with high repeatability. Its position and orientation data are not used for the measurement and therefore it is not directly “coupled” as an active component in the model. The function of the robot is to present the various surfaces of the workpiece along the measurement range of the vision system, which is responsible for the measurement. Thus, the whole system is not affected by the robot own errors following a trajectory, except those due to the lack of static repeatability. For the indirect link between the vision system and the robot, the original model developed needs only one first piece measuring as a “zero” or master piece, known by its accurate measurement using, for example, a Coordinate Measurement Machine. The strategy proposed presents a different approach to traditional laser triangulation systems on board the robot in order to improve the measurement accuracy, and several important cues for self-recalibration are explored using only a master piece. Experimental results are also presented to demonstrate the technique and the final 3D measurement accuracy. PMID:22346569

  9. Quantify Plasma Response to Non-Axisymmetric (3D) Magnetic Fields in Tokamaks, Final Report for FES (Fusion Energy Sciences) FY2014 Joint Research Target

    SciTech Connect

    Strait, E. J.; Park, J. -K.; Marmar, E. S.; Ahn, J. -W.; Berkery, J. W.; Burrell, K. H.; Canik, J. M.; Delgado-Aparicio, L.; Ferraro, N. M.; Garofalo, A. M.; Gates, D. A.; Greenwald, M.; Kim, K.; King, J. D.; Lanctot, M. J.; Lazerson, S. A.; Liu, Y. Q.; Lore, J. D.; Menard, J. E.; Nazikian, R.; Shafer, M. W.; Paz-Soldan, C.; Reiman, A. H.; Rice, J. E.; Sabbagh, S. A.; Sugiyama, L.; Turnbull, A. D.; Volpe, F.; Wang, Z. R.; Wolfe, S. M.

    2014-09-30

    The goal of the 2014 Joint Research Target (JRT) has been to conduct experiments and analysis to investigate and quantify the response of tokamak plasmas to non-axisymmetric (3D) magnetic fields. Although tokamaks are conceptually axisymmetric devices, small asymmetries often result from inaccuracies in the manufacture and assembly of the magnet coils, or from nearby magnetized objects. In addition, non-axisymmetric fields may be deliberately applied for various purposes. Even at small amplitudes of order 10-4 of the main axisymmetric field, such “3D” fields can have profound impacts on the plasma performance. The effects are often detrimental (reduction of stabilizing plasma rotation, degradation of energy confinement, localized heat flux to the divertor, or excitation of instabilities) but may in some case be beneficial (maintenance of rotation, or suppression of instabilities). In general, the magnetic response of the plasma alters the 3D field, so that the magnetic field configuration within the plasma is not simply the sum of the external 3D field and the original axisymmetric field. Typically the plasma response consists of a mixture of local screening of the external field by currents induced at resonant surfaces in the plasma, and amplification of the external field by stable kink modes. Thus, validated magnetohydrodynamic (MHD) models of the plasma response to 3D fields are crucial to the interpretation of existing experiments and the prediction of plasma performance in future devices. The non-axisymmetric coil sets available at each facility allow well-controlled studies of the response to external 3D fields. The work performed in support of the 2014 Joint Research Target has included joint modeling and analysis of existing experimental data, and collaboration on new experiments designed to address the goals of the JRT. A major focus of the work was validation of numerical models through quantitative comparison to experimental data, in

  10. Uranyl Ion Complexes with Long-Chain Aliphatic α,ω-Dicarboxylates and 3d-Block Metal Counterions.

    PubMed

    Thuéry, Pierre; Harrowfield, Jack

    2016-03-01

    Twelve new complexes were obtained from reaction of uranyl ions with the aliphatic dicarboxylic acids HOOC-(CH2)n-2-COOH (H2Cn; n = 7-10 and 12) under solvo-hydrothermal conditions, in the presence of 3d-block metal ions (Mn(2+), Fe(3+), Co(2+), Ni(2+), and Cu(2+)) and 2,2'-bipyridine (bipy) or 1,10-phenanthroline (phen). In contrast to previously reported triple-stranded helicates obtained with C9(2-) and C12(2-), all these complexes crystallize as polymeric one-dimensional (1D) or two-dimensional (2D) species. [Fe(bipy)3][(UO2)2(C7)3]·3H2O (1), [Cu(phen)2]2[(UO2)3(C7)4(H2O)2]·2H2O (2), and [Cu(bipy)2]2[(UO2)2(C9)3] (6), in which the 3d cation was reduced in situ, are 1D ladderlike polymers displaying tetra- or hexanuclear rings, of sufficient width to encompass two counterions in 2 and 6. The three complexes [Co(phen)3][(UO2)3(C8)3(O)]·H2O (3), [Ni(phen)3][(UO2)3(C8)3(O)]·H2O (4) and [Co(phen)3][(UO2)3(C9)3(O)]·H2O (5) contain bis(μ3-oxo)-bridged tetranuclear secondary building units, and they crystallize as deeply furrowed 2D assemblies. Depending on the nature of the counterion, C10(2-) gives [Ni(bipy)3][(UO2)2(C10)3]·2H2O (7), a 2D network displaying elongated decanuclear rings containing the counterions, or [Mn(phen)3][(UO2)2(C10)3]·6H2O (8), [Co(phen)3][(UO2)2(C10)3]·7H2O (9), and [Ni(phen)3][(UO2)2(C10)3]·7H2O (10), which consist of 2D assemblies with honeycomb topology; the hexanuclear rings in 8-10 are chairlike and occupied by one counterion and two uranyl groups from neighboring layers. Two complexes of the ligand with the longest chain, C12(2-), are reported. [UO2(C12)(bipy)] (11) is a neutral 1D species in which bipy chelates the uranyl ion and plays an important role in the packing through π-stacking interactions. Two polymeric units, 1D and 2D, coexist in the complex [Ni(bipy)3][(UO2)2(C12)3][UO2(C12)(H2O)2]·H2O (12); the 2D network has the honeycomb topology, but the hexanuclear rings are markedly convoluted, with local features akin to

  11. A hybrid Cartesian/immersed boundary method for simulating flows with 3D, geometrically complex, moving bodies

    NASA Astrophysics Data System (ADS)

    Gilmanov, Anvar; Sotiropoulos, Fotis

    2005-08-01

    A numerical method is developed for solving the 3D, unsteady, incompressible Navier-Stokes equations in Cartesian domains containing immersed boundaries of arbitrary geometrical complexity moving with prescribed kinematics. The governing equations are discretized on a hybrid staggered/non-staggered grid layout using second-order accurate finite-difference formulas. The discrete equations are integrated in time via a second-order accurate dual-time-stepping, artificial compressibility iteration scheme. Unstructured, triangular meshes are employed to discretize complex immersed boundaries. The nodes of the surface mesh constitute a set of Lagrangian control points used to track the motion of the flexible body. At every instant in time, the influence of the body on the flow is accounted for by applying boundary conditions at Cartesian grid nodes located in the exterior but in the immediate vicinity of the body by reconstructing the solution along the local normal to the body surface. Grid convergence tests are carried out for the flow induced by an oscillating sphere in a cubic cavity, which show that the method is second-order accurate. The method is validated by applying it to calculate flow in a Cartesian domain containing a rigid sphere rotating at constant angular velocity as well as flow induced by a flapping wing. The ability of the method to simulate flows in domains with arbitrarily complex moving bodies is demonstrated by applying to simulate flow past an undulating fish-like body and flow past an anatomically realistic planktonic copepod performing an escape-like maneuver.

  12. Investigation of the 2p_{32}-3d_{52} line emission of Au;{53+}-Au;{69+} for diagnosing high energy density plasmas.

    PubMed

    Brown, G V; Hansen, S B; Träbert, E; Beiersdorfer, P; Widmann, K; Chen, H; Chung, H K; Clementson, J H T; Gu, M F; Thorn, D B

    2008-06-01

    Measurements of the L -shell emission of highly charged gold ions were made under controlled laboratory conditions using the SuperEBIT electron beam ion trap, allowing detailed spectral observations of lines from Fe-like Au53+ through Ne-like Au69+ . Using atomic data from the Flexible Atomic Code, we have identified strong 3d_{52}-->2p_{32} emission features that can be used to diagnose the charge state distribution in high energy density plasmas, such as those found in the laser entrance hole of hot hohlraum radiation sources. We provide collisional-radiative calculations of the average ion charge Z as a function of temperature and density, which can be used to relate charge state distributions inferred from 3d_{52}-->2p_{32} emission features to plasma conditions, and investigate the effects of plasma density on calculated L -shell Au emission spectra. PMID:18643382

  13. Multi-frequency color-marked fringe projection profilometry for fast 3D shape measurement of complex objects.

    PubMed

    Jiang, Chao; Jia, Shuhai; Dong, Jun; Bao, Qingchen; Yang, Jia; Lian, Qin; Li, Dichen

    2015-09-21

    We propose a novel multi-frequency color-marked fringe projection profilometry approach to measure the 3D shape of objects with depth discontinuities. A digital micromirror device projector is used to project a color map consisting of a series of different-frequency color-marked fringe patterns onto the target object. We use a chromaticity curve to calculate the color change caused by the height of the object. The related algorithm to measure the height is also described in this paper. To improve the measurement accuracy, a chromaticity curve correction method is presented. This correction method greatly reduces the influence of color fluctuations and measurement error on the chromaticity curve and the calculation of the object height. The simulation and experimental results validate the utility of our method. Our method avoids the conventional phase shifting and unwrapping process, as well as the independent calculation of the object height required by existing techniques. Thus, it can be used to measure complex and dynamic objects with depth discontinuities. These advantages are particularly promising for industrial applications. PMID:26406621

  14. GPR simulation based on complex frequency shifted recursive integration PML boundary of 3D high order FDTD

    NASA Astrophysics Data System (ADS)

    Li, Jing; Zeng, Zhaofa; Huang, Ling; Liu, Fengshan

    2012-12-01

    When applying the finite difference time domain (FDTD) method in Ground Penetrating Radar (GPR) simulation, the absorbing boundary conditions (ABC) are used to mitigate undesired reflection that can arise at the model's truncation boundaries. The classical PML boundary can make spurious reflection for the waves, such as reaching to the PML interface with near-grazing angles, low frequency waves or evanescent waves. The non-split complex frequency shifted PML which base on recursive integration (CFS-RIPML) has a good absorption effect for these interference waves. Meanwhile, the recursive integration, which does not need split field component, can overcome the shortcoming of CFS technique that needs more intermediate variable and large memory. In addition, the high-order FDTD can improve calculation accuracy and reduce the error caused by numerical dispersion effectively. In this paper, we derive the 3D high-order FDTD method with CFS-RIPML boundary and apply it in GPR simulation. The results show that the CFS-RIPML has significantly better absorption effect and lower reflections error than UPML and PML boundary. Compared with the two-order, the high-order FDTD can improve calculation accuracy effectively with the same grid size. Combination with CFS-RIPML boundary and high-order FDTD can improve the reliability and calculation accuracy of GPR and other geophysics numerical simulation.

  15. 2D and 3D bimetallic oxalate-based ferromagnets prepared by insertion of Mn(III)-salen type complexes.

    PubMed

    Clemente-León, Miguel; Coronado, Eugenio; López-Jordà, Maurici

    2013-04-14

    The syntheses, structures and magnetic properties of the compounds of formulae [Mn((R)-salmen)(CH3OH)(CH3CN)][MnCr(ox)3](CH3OH)0.5(CH3CN)1.25 ((R)-1), [Mn((S)-salmen)(CH3OH)(CH3CN)][MnCr(ox)3](CH3OH)0.5(CH3CN)1.25 ((S)-1), [Mn((R)-salmen)(CH3OH)2][MnCr(ox)3](CH2Cl2)0.375(CH3OH)0.125(H2O)0.375 ((R)-2) and [Mn((S)-salmen)(CH3OH)2][MnCr(ox)3](CH2Cl2)0.375(CH3OH)0.375(H2O)0.125 ((S)-2) (ox = oxalate, salmen2− = N,N′-(1-methylethylene)bis(salicylideneiminate)), [Mn(salpn)(CH3OH)1.5(CH3CN)0.5][MnCr(ox)3](CH3OH)0.82(H2O)0.93 (3) (salpn2− = N,N′-(propane)bis(salicylideneiminate)) and [Mn(saltmen)(CH3OH)(CH3CN)][MnCr(ox)3](CH3OH) (4) (saltmen2− = N,N′-(1,1,2,2-tetramethylethylene)bis(salicylideneiminate)) are reported. These compounds are prepared by the insertion of MnIII–Schiff base complexes into bimetallic oxalate networks. Different types of bimetallic oxalate networks are obtained for each templating cation. Thus, [Mn((R)-salmen)]+ and [Mn((S)-salmen)]+ chiral templating cations give rise to a 2D chiral bimetallic oxalate layer in acetonitrile in (R)-1 and (S)-1 compounds, whereas a new type of achiral 3D oxalate network is obtained with the same templating cation in dichloromethane in (S)-2 and (R)-2. On the other hand, [Mn(salpn)]+ and [Mn(saltmen)]+ give rise respectively to a 3D chiral network and a 2D achiral network in compounds 3 and 4. The magnetic properties of the four compounds indicate that they undergo a long-range ferromagnetic ordering at ca. 5 K. PMID:23400252

  16. Opacity of iron, nickel, and copper plasmas in the x-ray wavelength range: Theoretical interpretation of 2p-3d absorption spectra

    NASA Astrophysics Data System (ADS)

    Blenski, T.; Loisel, G.; Poirier, M.; Thais, F.; Arnault, P.; Caillaud, T.; Fariaut, J.; Gilleron, F.; Pain, J.-C.; Porcherot, Q.; Reverdin, C.; Silvert, V.; Villette, B.; Bastiani-Ceccotti, S.; Turck-Chièze, S.; Foelsner, W.; de Gaufridy de Dortan, F.

    2011-09-01

    This paper deals with theoretical studies on the 2p-3d absorption in iron, nickel, and copper plasmas related to LULI2000 (Laboratoire pour l'Utilisation des Lasers Intenses, 2000J facility) measurements in which target temperatures were of the order of 20 eV and plasma densities were in the range 0.004-0.01 g/cm3. The radiatively heated targets were close to local thermodynamic equilibrium (LTE). The structure of 2p-3d transitions has been studied with the help of the statistical superconfiguration opacity code sco and with the fine-structure atomic physics codes hullac and fac. A new mixed version of the sco code allowing one to treat part of the configurations by detailed calculation based on the Cowan’s code rcg has been also used in these comparisons. Special attention was paid to comparisons between theory and experiment concerning the term features which cannot be reproduced by sco. The differences in the spin-orbit splitting and the statistical (thermal) broadening of the 2p-3d transitions have been investigated as a function of the atomic number Z. It appears that at the conditions of the experiment the role of the term and configuration broadening was different in the three analyzed elements, this broadening being sensitive to the atomic number. Some effects of the temperature gradients and possible non-LTE effects have been studied with the help of the radiative-collisional code scric. The sensitivity of the 2p-3d structures with respect to temperature and density in medium-Z plasmas may be helpful for diagnostics of LTE plasmas especially in future experiments on the Δn=0 absorption in medium-Z plasmas for astrophysical applications.

  17. Opacity of iron, nickel, and copper plasmas in the x-ray wavelength range: Theoretical interpretation of 2p-3d absorption spectra

    SciTech Connect

    Blenski, T.; Loisel, G.; Poirier, M.; Thais, F.; Arnault, P.; Caillaud, T.; Fariaut, J.; Gilleron, F.; Pain, J.-C.; Porcherot, Q.; Reverdin, C.; Silvert, V.; Villette, B.; Bastiani-Ceccotti, S.; Turck-Chieze, S.; Foelsner, W.; Gaufridy de Dortan, F. de

    2011-09-15

    This paper deals with theoretical studies on the 2p-3d absorption in iron, nickel, and copper plasmas related to LULI2000 (Laboratoire pour l'Utilisation des Lasers Intenses, 2000J facility) measurements in which target temperatures were of the order of 20 eV and plasma densities were in the range 0.004-0.01 g/cm{sup 3}. The radiatively heated targets were close to local thermodynamic equilibrium (LTE). The structure of 2p-3d transitions has been studied with the help of the statistical superconfiguration opacity code sco and with the fine-structure atomic physics codes hullac and fac. A new mixed version of the sco code allowing one to treat part of the configurations by detailed calculation based on the Cowan's code rcg has been also used in these comparisons. Special attention was paid to comparisons between theory and experiment concerning the term features which cannot be reproduced by sco. The differences in the spin-orbit splitting and the statistical (thermal) broadening of the 2p-3d transitions have been investigated as a function of the atomic number Z. It appears that at the conditions of the experiment the role of the term and configuration broadening was different in the three analyzed elements, this broadening being sensitive to the atomic number. Some effects of the temperature gradients and possible non-LTE effects have been studied with the help of the radiative-collisional code scric. The sensitivity of the 2p-3d structures with respect to temperature and density in medium-Z plasmas may be helpful for diagnostics of LTE plasmas especially in future experiments on the {Delta}n=0 absorption in medium-Z plasmas for astrophysical applications.

  18. Modification of divertor heat and article flux profiles with applied 3D fields in NSTX H-mode plasmas

    SciTech Connect

    Ahn, Joon-Wook; Canik, John; Soukhanovskii, V. A.; Maingi, Rajesh; Battaglia, D. J.

    2010-04-01

    Externally imposed non-axisymmetric magnetic perurbations are observed to alter divertor heat and particle flux profiles in the National Spherical Torus Experiment (NSTX). The divertor profiles are foud to have a modust level of multiple local peaks, characteristic of strike poimt splitting or the "magnetis lob" structure, even before the application of the 3D fields in some (but not all) NSTX discharges. This is thought to be due to the intrinsic error fields. The applied 3D fields augmented the intrinsic strike point splitting, making the ampliture of local peaks, and valleys larger in the divertor profile and striations at the divertor surface brighter. The measured heat flux profile shows that the radial location and spacing of the strations are qualitativel consistent witth a vacuum field tracing calcultion. 3D field application did not change the peak divertor heat and particle fluxes at the toroidal location of measurement. Spatial characteristics of the observed patterns are also reported in the paper.

  19. Restoring complex folded geometries in 3D using paleomagnetic vectors; a new tool to validate underground reconstructions

    NASA Astrophysics Data System (ADS)

    José Ramón, Mª; Pueyo, Emilio L.; Briz, José Luis; Caumon, Guillaume; Fernández, Óscar; Ciria, José Carlos; Pocovi, Andrés; Ros, Luis H.

    2013-04-01

    Three-dimensional reconstructions of the underground involve the integration of discrete and heterogeneous datasets and have significant socio- economic implications. The problem arises when there are limited data to build 3D models or when deformation processes are complex; these reasons inspired the development of restoration methods to validate subsurface reconstructions. The restoration is based on the application of simple geometric (or mechanic) laws that help reduce the uncertainty and increase geomodel accuracy. Apart from mechanical approaches, geometric methods are based on the initial assumption of global conservation of volume during deformation in addition to the paleo-horizontality of the stratigraphic horizons in the undeformed stage. The problem is that the bedding plane cannot be used as a three-dimensional reference system, because a single vector defines it and additional constraints are required. This is particularly important when dealing with complex structures, such as non-cylindrical structures and the superposition of non-coaxial geometries. In this context, paleomagnetism (known in both the deformed and undeformed stages) can contribute to building a more complete reference system and to reducing the uncertainty in restoration processes. The use of paleomagnetism in restoration tools was suggested in the early 1990's and only a few quantitative map-view applications have been developed since then. In this contribution, we introduce the two first surface restoration methods that use paleomagnetic vectors as a primary reference. The first one is a simple geometric approach based on the piecewise restoration of a triangulated surface into which paleomagnetic variables can be easily incorporated. It is valid for complexly folded structures. The surface is modelled by a mesh and the method starts from a pin-element. Triangles are laid flat and then fitted together to minimize distances between common vertices and paleomagnetic error. However

  20. Unravelling internal structures of an alkaline and carbonatite igneous complex by 3D modelling of gravity and magnetic data

    NASA Astrophysics Data System (ADS)

    Andersson, Magnus; Malehmir, Alireza

    2015-04-01

    Alnö igneous complex in central Sweden is among the few rare and largest alkaline and carbonatite ring-shaped intrusions in the world. Recent high-resolution reflection seismic profiles (Andersson et al., 2013) suggest a saucer-shaped magma chamber at about 3 km depth. Study of anisotropy of magnetic susceptibility (AMS) from a number of carbonatite dykes in the complex suggests a combination of laminar magma flow and sheet closure in the waning stage of magma transport for their emplacement (Andersson et al., 2015). Since 2010 and in conjunction with the above-mentioned studies, more than 400 gravity data points have been measured on land and partly on sea-ice. In addition, the Geological Survey of Sweden (SGU) provided about 100 data points. Petrophysical measurements including density and bulk magnetic susceptibility were carried out for more than 250 rock samples; magnetic remanence was measured on 39 of those samples. The measurements for example indicate that induced magnetisation is dominant in the complex and only a few rock samples show high remanent magnetisation (Q ≥ 1). SGU also provided airborne magnetic data (60 m flight altitude and 200 m flight line spacing) covering the complex on land and areas around it in the sea. These data show the complex as (i) a strong positive Bouguer anomaly, around 20 mGal, one of the strongest gravity gradients observed in Sweden, and (ii) a strong positive magnetic anomaly, around 2400 nT, additionally showing clear magnetic structures within the complex and adjacent to it in the sea. 3D inversion of the gravity and magnetic data was then performed using 100 m by 100 m meshes in the lateral direction and vertically varying meshes starting from 10 m at surface and increasing to 100 m in the depth interval 4250 - 8250 m. The inversion models cover an area of 17 km by 18 km. Regional fields were removed using a first-order polynomial surface for the gravity data and a constant (IGRF) for the magnetic data. Background

  1. Dust density influence on complex plasma decay

    SciTech Connect

    Coueedel, L.; Mikikian, M.; Boufendi, L.

    2008-09-07

    In this paper, the influence of dust particles on the plasma losses in a complex plasma afterglow is studied. It is shown that the dust particles can drastically shorten the plasma loss time by absorption-recombination onto their surfaces. The dust particle absorption frequency increases with the dust density but the dependence is not linear for high dust density. Finally, the possible use of dust absorption frequency measurements as a diagnostics for complex plasmas is mentioned and supported by comparison to existing experimental data.

  2. Use of a twisted 3D Cauchy condition surface to reconstruct the last closed magnetic surface in a non-axisymmetric fusion plasma

    NASA Astrophysics Data System (ADS)

    Itagaki, Masafumi; Okubo, Gaku; Akazawa, Masayuki; Matsumoto, Yutaka; Watanabe, Kiyomasa; Seki, Ryosuke; Suzuki, Yasuhiro

    2012-12-01

    The three-dimensional (3D) Cauchy condition surface (CCS) method code, ‘CCS3D’, is now under development to reconstruct the 3D magnetic field profile outside a non-axisymmetric fusion plasma using only magnetic sensor signals. A new ‘twisted CCS’ is introduced, whose elliptic cross-section rotates with the variation in plasma geometry in the toroidal direction of a helical-type device. Independent of the toroidal angle, this CCS can be placed at a certain distance from the last closed magnetic surface (LCMS). With this new CCS, it is found through test calculations for the Large Helical Device that the numerical accuracy in the reconstructed field is improved. Furthermore, the magnetic field line tracing indicates the LCMS more precisely than with the use of the axisymmetric CCS. A new idea to determine the LCMS numerically is also proposed.

  3. Interparticle Attraction in 2D Complex Plasmas

    NASA Astrophysics Data System (ADS)

    Kompaneets, Roman; Morfill, Gregor E.; Ivlev, Alexei V.

    2016-03-01

    Complex (dusty) plasmas allow experimental studies of various physical processes occurring in classical liquids and solids by directly observing individual microparticles. A major problem is that the interaction between microparticles is generally not molecularlike. In this Letter, we propose how to achieve a molecularlike interaction potential in laboratory 2D complex plasmas. We argue that this principal aim can be achieved by using relatively small microparticles and properly adjusting discharge parameters. If experimentally confirmed, this will make it possible to employ complex plasmas as a model system with an interaction potential resembling that of conventional liquids.

  4. The complex 3-D transition from continental crust to backarc magmatism and exhumed mantle in the Central Tyrrhenian basin

    NASA Astrophysics Data System (ADS)

    Prada, M.; Sallares, V.; Ranero, C. R.; Vendrell, M. G.; Grevemeyer, I.; Zitellini, N.; de Franco, R.

    2015-10-01

    Geophysical data from the MEDOC experiment across the Northern Tyrrhenian backarc basin has mapped a failed rift during backarc extension of cratonic Variscan lithosphere. In contrast, data across the Central Tyrrhenian have revealed the presence of magmatic accretion followed by mantle exhumation after continental breakup. Here we analyse the MEDOC transect E-F, which extends from Sardinia to the Campania margin at 40.5°N, to define the distribution of geological domains in the transition from the complex Central Tyrrhenian to the extended continental crust of the Northern Tyrrhenian. The crust and uppermost mantle structure along this ˜400-km-long transect have been investigated based on wide-angle seismic data, gravity modelling and multichannel seismic reflection imaging. The P-wave tomographic model together with a P-wave-velocity-derived density model and the multichannel seismic images reveal seven different domains along this transect, in contrast to the simpler structure to the south and north. The stretched continental crust under Sardinia margin abuts the magmatic crust of Cornaglia Terrace, where accretion likely occurred during backarc extension. Eastwards, around Secchi seamount, a second segment of thinned continental crust (7-8 km) is observed. Two short segments of magmatically modified continental crust are separated by the ˜5-km-wide segment of the Vavilov basin possibly made of exhumed mantle rocks. The eastern segment of the 40.5°N transect E-F is characterized by continental crust extending from mainland Italy towards the Campania margin. Ground truthing and prior geophysical information obtained north and south of transect E-F was integrated in this study to map the spatial distribution of basement domains in the Central Tyrrhenian basin. The northward transition of crustal domains depicts a complex 3-D structure represented by abrupt spatial changes of magmatic and non-magmatic crustal domains. These observations imply rapid variations

  5. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 1: Theory and method

    NASA Technical Reports Server (NTRS)

    Shih, T. I.-P.; Bailey, R. T.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  6. The Tonga-Vanuatu Subduction Complex -- a Self-Optimized 3D Slab-Slab-Mantle Heat Pump

    NASA Astrophysics Data System (ADS)

    McCreary, J. A.

    2008-12-01

    Recently published geophysical and geochemical data and increasingly actualistic free subduction models prompted a fresh look at 2 classics hinting, in combination, that a coupled 3D slab-slab-upper mantle interaction (Scholz and Campos, 1995; full citations at URL below) might power the prodigious surface heat dissipation (Lagabrielle et al., 1997) characterizing one of Earth's most remarkable tectonomagmatic systems, the Tonga-Vanuatu Subduction Complex (TVSC). The 3D TVSC includes (1) the kinematically, magmatically, and bathymetrically distinct North Tonga (NT, 14-26° S) and South Vanuatu (SV, 16-23° S) trenches and slabs, (2) the shared NT-SV backarc, and (3) entrained mobile upper mantle (MUM). That Earth's greatest convergence, rollback, and spreading rates; most disseminated spreading (the North Fiji Basin (NFB) ridge swarm); and greatest concentration of aggregate active ridge length coincide in a 1,500 km TVSC can't be accidental. To the north and south, the respective active NT and SV trenches swing abruptly 90° counterclockwise into continuity with the Vitiaz and Hunter fossil trenches, both active in the Late Miocene but now sinistral strike-slip loci standing over long exposed PA and AU slab edges. These 2 active-fossil trench pairs bracket a hot, shallow and geophysically and geochemically exceptional TVSC interior consisting of 2 rapidly spreading backarcs set back-to-back in free sublithospheric communication: The Lau-Havre NT backarc on the east and the ridge-infested SV backarc (NFB) on the west. The NFB and adjacent North Fiji Plateau make up the unplatelike New Hebrides-Fiji Orogen (Bird, 2003). As in the western Aleutians, the NT-Vitiaz and SV-Hunter subduction-to-strike-slip transitions (SSSTs) stand above toroidal fluxes of hot, dry PA and AU MUM driven along-trench and around the free NT and SV slab edges from subslab to supraslab regions by dynamic pressure gradients powered by slab free-fall and induced viscous couplings. These edge

  7. Impact of an Event-Specific Plasma Density Model for Modeling the October 8-9, 2012, Event with the LANL DREAM3D Diffusion Code

    NASA Astrophysics Data System (ADS)

    Cunningham, G.; Tu, W.; Morley, S.; Chen, Y.; Haidecuk, J.; De Pascuale, S.; Kletzing, C.

    2014-12-01

    Modeling the variation of the MeV electron phase space density in the inner magnetosphere during active times is sensitive to many parameters, including the initial and time-varying boundary conditions, VLF wave spectral properties, plasma density, and magnetic field. Historically, diffusion codes like LANL's DREAM3D have relied on the statistically-derived dependence of these parameters on geomagnetic indices, e.g. the wave intensity as a function of the AE index. However, the large number of satellites currently sampling the inner magnetosphere presents modelers with an unparalleled opportunity to create 'event-specific' models for many of these parameters. Toward this goal, we recently showed that using an event-specific model of the chorus wave intensity, built from proxy observations of low-energy electron precipitation observed by POES, along with a low-energy time-varying boundary condition informed by the Van Allen Probes, allows DREAM3D to reproduce the large enhancement of PSD for MeV electrons observed during the October 8-9, 2012, storm. One major limitation of this work is the fact that we used the static Sheeley plasma density model and a dipole magnetic field. Here we will discuss new results that use measurements of the plasma density inferred from the Van Allen Probes' EMFISIS instrument to build an event-specific, global, time-dependent model of the plasma density that we use in DREAM3D in combination with the Tsyganenko 2004 storm-time model of the magnetic field. We show that this combination of plasma density and magnetic field model reproduce the ratio of cyclotron frequency to plasma frequency reported by EMFISIS during the entirety of the October 8-9, 2012, storm at all L-shells of interest, whereas our earlier results did not use the correct ratio at most locations and times. Because this ratio is a key parameter governing the effectiveness of chorus waves in accelerating electrons to higher energy, our new DREAM3D results resolve several

  8. Maximizing modern distribution of complex anatomical spatial information: 3D reconstruction and rapid prototype production of anatomical corrosion casts of human specimens.

    PubMed

    Li, Jianyi; Nie, Lanying; Li, Zeyu; Lin, Lijun; Tang, Lei; Ouyang, Jun

    2012-01-01

    Anatomical corrosion casts of human specimens are useful teaching aids. However, their use is limited due to ethical dilemmas associated with their production, their lack of perfect reproducibility, and their consumption of original specimens in the process of casting. In this study, new approaches with modern distribution of complex anatomical spatial information were explored to overcome these limitations through the digitalization of anatomical casts of human specimens through three-dimensional (3D) reconstruction, rapid prototype production, and Web-based 3D atlas construction. The corrosion cast of a lung, along with its associated arteries, veins, trachea, and bronchial tree was CT-scanned, and the data was then processed by Mimics software. Data from the lung casts were then reconstructed into 3D models using a hybrid method, utilizing both "image threshold" and "region growing." The fine structures of the bronchial tree, arterial, and venous network of the lung were clearly displayed and demonstrated their distinct relationships. The multiple divisions of bronchi and bronchopulmonary segments were identified. The 3D models were then uploaded into a rapid prototype 3D printer to physically duplicate the cast. The physically duplicated model of the lung was rescanned by CT and reconstructed to detect its production accuracy. Gross observation and accuracy detection were used to evaluate the duplication and few differences were found. Finally, Virtual Reality Modeling Language (VRML) was used to edit the 3D casting models to construct a Web-based 3D atlas accessible through Internet Explorer with 3D display and annotation functions. PMID:22653786

  9. Collisional Effects in Complex (Dusty) Plasmas

    SciTech Connect

    Khrapak, S. A.

    2008-09-07

    This is a short overview of recent results demonstrating the importance of ion-neutral collisions for different processes naturally occurring in complex (dusty) plasmas. Most important developments are briefly discussed and relevant references are provided.

  10. 3D time-lapse analysis of Rab11/FIP5 complex: spatiotemporal dynamics during apical lumen formation.

    PubMed

    Mangan, Anthony; Prekeris, Rytis

    2015-01-01

    Fluorescent imaging of fixed cells grown in two-dimensional (2D) cultures is one of the most widely used techniques for observing protein localization and distribution within cells. Although this technique can also be applied to polarized epithelial cells that form three-dimensional (3D) cysts when grown in a Matrigel matrix suspension, there are still significant limitations in imaging cells fixed at a particular point in time. Here, we describe the use of 3D time-lapse imaging of live cells to observe the dynamics of apical membrane initiation site (AMIS) formation and lumen expansion in polarized epithelial cells. PMID:25800842

  11. Syntheses, crystal structures, and characterization of three 1D, 2D and 3D complexes based on mixed multidentate N- and O-donor ligands

    SciTech Connect

    Yang, Huai-Xia; Liang, Zhen; Hao, Bao-Lian; Meng, Xiang-Ru

    2014-10-15

    Three new 1D to 3D complexes, namely, ([Ni(btec)(Himb){sub 2}(H{sub 2}O){sub 2}]·6H{sub 2}O){sub n} (1), ([Cd(btec){sub 0.5}(imb)(H{sub 2}O)]·1.5H{sub 2}O){sub n} (2), and ([Zn(btec){sub 0.5}(imb)]·H{sub 2}O){sub n} (3) (H{sub 4}btec=1,2,4,5-benzenetetracarboxylic acid, imb=2-(1H-imidazol-1-methyl)-1H-benzimidazole) have been synthesized by adjusting the central metal ions. Single-crystal X-ray diffraction analyses reveal that complex 1 possesses a 1D chain structure which is further extended into the 3D supramolecular architecture via hydrogen bonds. Complex 2 features a 2D network with Schla¨fli symbol (5{sup 3}·6{sup 2}·7)(5{sup 2}·6{sup 4}). Complex 3 presents a 3D framework with a point symbol of (4·6{sup 4}·8)(4{sup 2}·6{sup 2}·8{sup 2}). Moreover, their IR spectra, PXRD patterns, thermogravimetric curves, and luminescent emissions were studied at room temperature. - Graphical abstract: Three new 1D to 3D complexes with different structural and topological motifs have been obtained by modifying the central metal ions. Additionally, their IR, TG analyses and fluorescent properties are also investigated. - Highlights: • Three complexes based on mixed multidentate N- and O-donor ligands. • The complexes are characterized by IR, luminescence and TGA techniques. • Benzenetetracarboxylates display different coordination modes in complexes 1–3. • Changing the metal ions can result in complexes with completely different structures.

  12. Complex plasmas: An interdisciplinary research field

    NASA Astrophysics Data System (ADS)

    Morfill, Gregor E.; Ivlev, Alexei V.

    2009-10-01

    Complex (dusty) plasmas are composed of a weakly ionized gas and charged microparticles and represent the plasma state of soft matter. Complex plasmas have several remarkable features: Dynamical time scales associated with microparticles are “stretched” to tens of milliseconds, yet the microparticles themselves can be easily visualized individually. Furthermore, since the background gas is dilute, the particle dynamics in strongly coupled complex plasmas is virtually undamped, which provides a direct analogy to regular liquids and solids in terms of the atomistic dynamics. Finally, complex plasmas can be easily manipulated in different ways—also at the level of individual particles. Altogether, this gives us a unique opportunity to go beyond the limits of continuous media and study—at the kinetic level—various generic processes occurring in liquids or solids, in regimes ranging from the onset of cooperative phenomena to large strongly coupled systems. In the first part of the review some of the basic and new physics are highlighted which complex plasmas enable us to study, and in the second (major) part strong coupling phenomena in an interdisciplinary context are examined. The connections with complex fluids are emphasized and a number of generic liquid and solid-state issues are addressed. In summary, application oriented research is discussed.

  13. Complex plasmas: An interdisciplinary research field

    SciTech Connect

    Morfill, Gregor E.; Ivlev, Alexei V.

    2009-10-15

    Complex (dusty) plasmas are composed of a weakly ionized gas and charged microparticles and represent the plasma state of soft matter. Complex plasmas have several remarkable features: Dynamical time scales associated with microparticles are ''stretched'' to tens of milliseconds, yet the microparticles themselves can be easily visualized individually. Furthermore, since the background gas is dilute, the particle dynamics in strongly coupled complex plasmas is virtually undamped, which provides a direct analogy to regular liquids and solids in terms of the atomistic dynamics. Finally, complex plasmas can be easily manipulated in different ways--also at the level of individual particles. Altogether, this gives us a unique opportunity to go beyond the limits of continuous media and study--at the kinetic level--various generic processes occurring in liquids or solids, in regimes ranging from the onset of cooperative phenomena to large strongly coupled systems. In the first part of the review some of the basic and new physics are highlighted which complex plasmas enable us to study, and in the second (major) part strong coupling phenomena in an interdisciplinary context are examined. The connections with complex fluids are emphasized and a number of generic liquid and solid-state issues are addressed. In summary, application oriented research is discussed.

  14. Modeling of tungsten transport in the linear plasma device PSI-2 with the 3D Monte-Carlo code ERO

    NASA Astrophysics Data System (ADS)

    Marenkov, E.; Eksaeva, A.; Borodin, D.; Kirschner, A.; Laengner, M.; Kurnaev, V.; Kreter, A.; Coenen, J. W.; Rasinski, M.

    2015-08-01

    The ERO code was modified for modeling of plasma-surface interactions and impurities transport in the PSI-2 installation. Results of experiments on tungsten target irradiation with argon plasma were taken as a benchmark for the new version of the code. Spectroscopy data modeled with the code are in good agreement with experimental ones. Main factors contributing to observed discrepancies are discussed.

  15. Benchmark of 3D halo neutral simulation in TRANSP and FIDASIM and application to projected neutral-beam-heated NSTX-U plasmas

    NASA Astrophysics Data System (ADS)

    Liu, D.; Medley, S. S.; Gorelenkova, M. V.; Heidbrink, W. W.; Stagner, L.

    2014-10-01

    A cloud of halo neutrals is created in the vicinity of beam footprint during the neutral beam injection and the halo neutral density can be comparable with beam neutral density. Proper modeling of halo neutrals is critical to correctly interpret neutral particle analyzers (NPA) and fast ion D-alpha (FIDA) signals since these signals strongly depend on local beam and halo neutral density. A 3D halo neutral model has been recently developed and implemented inside TRANSP code. The 3D halo neutral code uses a ``beam-in-a-box'' model that encompasses both injected beam neutrals and resulting halo neutrals. Upon deposition by charge exchange, a subset of the full, one-half and one-third beam energy components produce thermal halo neutrals that are tracked through successive halo neutral generations until an ionization event occurs or a descendant halo exits the box. A benchmark between 3D halo neural model in TRANSP and in FIDA/NPA synthetic diagnostic code FIDASIM is carried out. Detailed comparison of halo neutral density profiles from two codes will be shown. The NPA and FIDA simulations with and without 3D halos are applied to projections of plasma performance for the National Spherical Tours eXperiment-Upgrade (NSTX-U) and the effects of halo neutral density on NPA and FIDA signal amplitude and profile will be presented. Work supported by US DOE.

  16. 3-D Numerical Modeling as a Tool for Managing Mineral Water Extraction from a Complex Groundwater Basin in Italy

    NASA Astrophysics Data System (ADS)

    Zanini, A.; Tanda, M.

    2007-12-01

    The groundwater in Italy plays an important role as drinking water; in fact it covers about the 30% of the national demand (70% in Northern Italy). The mineral water distribution in Italy is an important business with an increasing demand from abroad countries. The mineral water Companies have a great interest in order to increase the water extraction, but for the delicate and complex geology of the subsoil, where such very high quality waters are contained, a particular attention must be paid in order to avoid an excessive lowering of the groundwater reservoirs or great changes in the groundwater flow directions. A big water Company asked our University to set up a numerical model of the groundwater basin, in order to obtain a useful tool which allows to evaluate the strength of the aquifer and to design new extraction wells. The study area is located along Appennini Mountains and it covers a surface of about 18 km2; the topography ranges from 200 to 600 m a.s.l.. In ancient times only a spring with naturally sparkling water was known in the area, but at present the mineral water is extracted from deep pumping wells. The area is characterized by a very complex geology: the subsoil structure is described by a sequence of layers of silt-clay, marl-clay, travertine and alluvial deposit. Different groundwater layers are present and the one with best quality flows in the travertine layer; the natural flow rate seems to be not subjected to seasonal variations. The water age analysis revealed a very old water which means that the mineral aquifers are not directly connected with the meteoric recharge. The Geologists of the Company suggest that the water supply of the mineral aquifers comes from a carbonated unit located in the deep layers of the mountains bordering the spring area. The valley is crossed by a river that does not present connections to the mineral aquifers. Inside the area there are about 30 pumping wells that extract water at different depths. We built a 3

  17. Novel 3D Tissue Engineered Bone Model, Biomimetic Nanomaterials, and Cold Atmospheric Plasma Technique for Biomedical Applications

    NASA Astrophysics Data System (ADS)

    Wang, Mian

    This thesis research is consist of four chapters, including biomimetic three-dimensional tissue engineered nanostructured bone model for breast cancer bone metastasis study (Chapter one), cold atmospheric plasma for selectively ablating metastatic breast cancer (Chapter two), design of biomimetic and bioactive cold plasma modified nanostructured scaffolds for enhanced osteogenic differentiation of bone marrow derived mesenchymal stem cells (Chapter three), and enhanced osteoblast and mesenchymal stem cell functions on titanium with hydrothermally treated nanocrystalline hydroxyapatite/magnetically treated carbon nanotubes for orthopedic applications (Chapter four). All the thesis research is focused on nanomaterials and the use of cold plasma technique for various biomedical applications.

  18. 3D Ion Temperature Reconstruction

    NASA Astrophysics Data System (ADS)

    Tanabe, Hiroshi; You, Setthivoine; Balandin, Alexander; Inomoto, Michiaki; Ono, Yasushi

    2009-11-01

    The TS-4 experiment at the University of Tokyo collides two spheromaks to form a single high-beta compact toroid. Magnetic reconnection during the merging process heats and accelerates the plasma in toroidal and poloidal directions. The reconnection region has a complex 3D topology determined by the pitch of the spheromak magnetic fields at the merging plane. A pair of multichord passive spectroscopic diagnostics have been established to measure the ion temperature and velocity in the reconnection volume. One setup measures spectral lines across a poloidal plane, retrieving velocity and temperature from Abel inversion. The other, novel setup records spectral lines across another section of the plasma and reconstructs velocity and temperature from 3D vector and 2D scalar tomography techniques. The magnetic field linking both measurement planes is determined from in situ magnetic probe arrays. The ion temperature is then estimated within the volume between the two measurement planes and at the reconnection region. The measurement is followed over several repeatable discharges to follow the heating and acceleration process during the merging reconnection.

  19. Radiochromic 3D Detectors

    NASA Astrophysics Data System (ADS)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  20. Correlation of C3d fixing circulating immune complexes with disease activity and clinical parameters in patients with systemic lupus erythematosus.

    PubMed Central

    Sekita, K; Doi, T; Muso, E; Yoshida, H; Kanatsu, K; Hamashima, Y

    1984-01-01

    Using anti-C3d as a solid phase reagent, C3d fixing circulating immune complexes (CIC) were detected in sera from patients with systemic lupus erythematosus (SLE), rheumatoid arthritis, membranous nephropathy and IgA nephropathy. Particularly, sera from SLE showed the highest CIC levels and highest incidence of positivity among these diseases. In the 51 serum samples from 48 patients with SLE we studied, the CIC detected by the anti-C3d assay correlated well (P less than 0.01) with the CIC detected by the solid phase C1q assay, but not with those detected by the conglutinin assay. In addition, the CIC detected by the anti-C3d assay correlated more significantly (P less than 0.001) with disease activity, as well as some clinical parameters (serum anti-dsDNA antibodies, CH50 and C3 levels) than CIC detected by the other two assays of SLE sera. The anti-C3d binding materials were found to be of intermediate (8-19S) and small (7S) sizes in a small number of SLE sera which we analysed. PMID:6608422

  1. SDO: Complex Mass of Plasma

    NASA Video Gallery

    A small, but complex mass of solar material gyrated and spun about over the course of 40 hours above the surface of the sun on Sept. 1-3, 2015. It was stretched and pulled back and forth by powerfu...

  2. Chemotaxis of Caenorhabditis elegans in complex media: crawling, burrowing, 2D and 3D swimming, and controlled fluctuations hypothesis

    NASA Astrophysics Data System (ADS)

    Patel, Amar; Bilbao, Alejandro; Rahman, Mizanur; Vanapalli, Siva; Blawzdziewicz, Jerzy

    Caenorhabditis elegans is a powerful genetic model, essential for studies in diverse areas ranging from behavior to neuroscience to aging, and locomotion and chemotaxis are the two key observables used. We combine our recently developed theory of nematode locomotion and turning maneuvers [Phys. Fluids 25, 081902 (2013)] with simple models of chemosensation to analyze nematode chemotaxis strategies in 2D and 3D environments. We show that the sharp-turn (pirouette) chemotaxis mechanism is efficient in diverse media; in particular, the nematode does not need to adjust the sensing or motion-control parameters to efficiently chemotax in 2D crawling, 3D burrowing, and 2D or 3D swimming. In contrast, the graduate-turn mechanism becomes inefficient in swimming, unless a phase-shift is introduced between the sensing signal and modulation of body wave to generate the gradual turn. We hypothesize that there exists a new ``controlled fluctuations'' chemotaxis mechanism, in which the nematode changes the intensity of undulation fluctuations to adjust the persistence length of the trajectory in response to a variation in chemoattractant concentration. Supported by NSF Grant No. CBET 1059745.

  3. Investigation of the 2p3/2-3d5/2 line emission of Au53+ -- Au69+ for diagnosing high energy density plasmas

    SciTech Connect

    Brown, G V; Hansen, S B; Trabert, E; Beiersdorfer, P; Widmann, K; Chen, H; Chung, H K; Clementson, J T; Gu, M F; Thorn, D B

    2008-01-29

    Measurements of the L-shell emission of highly charged gold ions were made under controlled laboratory conditions using the SuperEBIT electron beam ion trap, allowing detailed spectral observations of lines from ironlike Au{sup 53+} through neonlike Au{sup 69+}. Using atomic data from the Flexible Atomic Code, we have identified strong 3d{sub 5/2} {yields} 2p{sub 3/2} emission features that can be used to diagnose the charge state distribution in high energy density plasmas, such as those found in the laser entrance hole of hot hohlraum radiation sources. We provide collisional-radiative calculations of the average ion charge as a function of temperature and density, which can be used to relate charge state distributions inferred from 3d{sub 5/2} {yields} 2p{sub 3/2} emission features to plasma conditions, and investigate the effects of plasma density on calculated L-shell Au emission spectra.

  4. Tokamak plasma high field side response to an n = 3 magnetic perturbation: a comparison of 3D equilibrium solutions from seven different codes

    NASA Astrophysics Data System (ADS)

    Reiman, A.; Ferraro, N. M.; Turnbull, A.; Park, J. K.; Cerfon, A.; Evans, T. E.; Lanctot, M. J.; Lazarus, E. A.; Liu, Y.; McFadden, G.; Monticello, D.; Suzuki, Y.

    2015-06-01

    In comparing equilibrium solutions for a DIII-D shot that is amenable to analysis by both stellarator and tokamak three-dimensional (3D) equilibrium codes, a significant disagreement has been seen between solutions of the VMEC stellarator equilibrium code and solutions of tokamak perturbative 3D equilibrium codes. The source of that disagreement has been investigated, and that investigation has led to new insights into the domain of validity of the different equilibrium calculations, and to a finding that the manner in which localized screening currents at low order rational surfaces are handled can affect global properties of the equilibrium solution. The perturbative treatment has been found to break down at surprisingly small perturbation amplitudes due to overlap of the calculated perturbed flux surfaces, and that treatment is not valid in the pedestal region of the DIII-D shot studied. The perturbative treatment is valid, however, further into the interior of the plasma, and flux surface overlap does not account for the disagreement investigated here. Calculated equilibrium solutions for simple model cases and comparison of the 3D equilibrium solutions with those of other codes indicate that the disagreement arises from a difference in handling of localized currents at low order rational surfaces, with such currents being absent in VMEC and present in the perturbative codes. The significant differences in the global equilibrium solutions associated with the presence or absence of very localized screening currents at rational surfaces suggests that it may be possible to extract information about localized currents from appropriate measurements of global equilibrium plasma properties. That would require improved diagnostic capability on the high field side of the tokamak plasma, a region difficult to access with diagnostics.

  5. Exploring the Impact of Visual Complexity Levels in 3d City Models on the Accuracy of Individuals' Orientation and Cognitive Maps

    NASA Astrophysics Data System (ADS)

    Rautenbach, V.; Çöltekin, A.; Coetzee, S.

    2015-08-01

    In this paper we report results from a qualitative user experiment (n=107) designed to contribute to understanding the impact of various levels of complexity (mainly based on levels of detail, i.e., LoD) in 3D city models, specifically on the participants' orientation and cognitive (mental) maps. The experiment consisted of a number of tasks motivated by spatial cognition theory where participants (among other things) were given orientation tasks, and in one case also produced sketches of a path they `travelled' in a virtual environment. The experiments were conducted in groups, where individuals provided responses on an answer sheet. The preliminary results based on descriptive statistics and qualitative sketch analyses suggest that very little information (i.e., a low LoD model of a smaller area) might have a negative impact on the accuracy of cognitive maps constructed based on a virtual experience. Building an accurate cognitive map is an inherently desired effect of the visualizations in planning tasks, thus the findings are important for understanding how to develop better-suited 3D visualizations such as 3D city models. In this study, we specifically discuss the suitability of different levels of visual complexity for development planning (urban planning), one of the domains where 3D city models are most relevant.

  6. Complex Plasma with Two Distinct Particle Sizes

    NASA Astrophysics Data System (ADS)

    Smith, Bernard; Matthews, Lorin; Hyde, Truell

    2008-10-01

    Dust particle clouds can be found in almost all plasma processing environments including both plasma etching devices and in plasma deposition processes. Dust particles suspended within such plasmas acquire an electric charge from collisions with free electrons in the plasma. If the ratio of inter-particle potential energy to the average kinetic energy is sufficient, the particles will form either a ``liquid'' structure with short range ordering or a crystalline structure with long range ordering. Otherwise, the dust particle system will remain in a gaseous state. The preponderance of prior experiments used monodisperse spheres to form complex plasma systems. In order to determine the effects of a size distribution, multiple monodisperse particle sizes need to be examined to determine the manner in which phase transitions and other thermodynamic properties depend upon the overall dust grain size distribution. In this experiment, two-dimensional plasma crystals were formed from mixtures of 11.9 μm and 6.50 μm monodisperse particles in Argon plasma. With the use of various optical techniques, the pair correlation function was determined at different pressures and powers and then compared to measurements obtained for experiments employing a single size distribution of monodisperse spheres. Additionally, vibrational data was examined to determine other dust and plasma parameters.

  7. Syntheses, crystal structures, and characterization of three 1D, 2D and 3D complexes based on mixed multidentate N- and O-donor ligands

    NASA Astrophysics Data System (ADS)

    Yang, Huai-Xia; Liang, Zhen; Hao, Bao-Lian; Meng, Xiang-Ru

    2014-10-01

    Three new 1D to 3D complexes, namely, {[Ni(btec)(Himb)2(H2O)2]·6H2O}n (1), {[Cd(btec)0.5(imb)(H2O)]·1.5H2O}n (2), and {[Zn(btec)0.5(imb)]·H2O}n (3) (H4btec=1,2,4,5-benzenetetracarboxylic acid, imb=2-(1H-imidazol-1-methyl)-1H-benzimidazole) have been synthesized by adjusting the central metal ions. Single-crystal X-ray diffraction analyses reveal that complex 1 possesses a 1D chain structure which is further extended into the 3D supramolecular architecture via hydrogen bonds. Complex 2 features a 2D network with Schla¨fli symbol (53·62·7)(52·64). Complex 3 presents a 3D framework with a point symbol of (4·64·8)(42·62·82). Moreover, their IR spectra, PXRD patterns, thermogravimetric curves, and luminescent emissions were studied at room temperature.

  8. Kinetic description of the 3D electromagnetic structures formation in flows of expanding plasma coronas. Part 1: General

    NASA Astrophysics Data System (ADS)

    Gubchenko, V. M.

    2015-12-01

    In part I of the work, the physical effects responsible for the formation of low-speed flows in plasma coronas, coupled with formation of coronas magnetosphere-like structures, are described qualitatively. Coronal domain structures form if we neglect scales of spatial plasma dispersion: high-speed flows are accumulated in magnetic tubes of the open domains, while magnetic structures and low-speed flows are concentrated within boundaries of domains. The inductive electromagnetic process occurring in flows of the hot collisionless plasma is shown to underlie the formation of magnetosphere-like structures. Depending on the form of the velocity distribution function of particles (PDF), a hot flow differently reveals its electromagnetic properties, which are expressed by the induction of resistive and diamagnetic scales of spatial dispersion. These determine the magnetic structure scales and structure reconstruction. The inductive electromagnetic process located in lines of the plasma nontransparency and absorption, in which the structures of excited fields are spatially aperiodic and skinned to the magnetic field sources. The toroidal and dipole magnetic sources of different configurations are considered for describing the corona structures during the solar maximum and solar minimum.

  9. Syntheses, structures, and photoluminescence of d 10 coordination architectures: From 1D to 3D complexes based on mixed ligands

    NASA Astrophysics Data System (ADS)

    Yuan, Gang; Shao, Kui-Zhan; Du, Dong-Ying; Wang, Xin-Long; Su, Zhong-Min

    2011-05-01

    Six new compounds, namely, {[Cd 3(Himpy) 3(tda) 2]·3H 2O} n ( 1), {[Zn 3(bipy) 2(tda) 2(H 2O) 2]·4H 2O} n ( 2), {[Cd 3(bipy) 3(tda) 2]·4H 2O} n ( 3), {[Cd 3(tda) 2(H 2O) 3Cl]·H 2O} n ( 4), {[Zn 2(tz)(tda)(H 2O) 2]·H 2O} n ( 5) and {[Cd 7(pz)(tda) 4(OAc)(H 2O) 7]·3H 2O} n ( 6) [H 3tda = 1H-1,2,3-triazole-4,5-dicarboxylic acid, Himpy = 2-(1H-imidazol-2-yl)pyridine, bipy = 2,2'-bipyridine, Htz = 1H-1,2,4-triazole, H 2pz = piperazine] have been prepared under hydrothermal condition and characterized by elemental analyses, infrared spectroscopy, powder X-ray diffraction and single-crystal X-ray diffraction analyses. Compound 1 is a 1D column-like structure and displays a 3D supramolecular network via the π···π stacking interaction. The compounds 2 and 3 exhibit similar 2D layer-like structure, which further extend to 3D supermolecular structure by the π···π stacking interaction. All of compounds 4- 6 display 3D framework with diverse topology constructed from the tda 3- ligands in different coordination modes and secondary ligands (or bridging atom) connecting metal ions. Furthermore, the thermal stabilities and photoluminescent properties of compounds 1- 6 were studied.

  10. Thickness Reconstruction of Layers by 3D Geometrical Model to Characterize Caledonian Tectonic Complex and Data in Latvia

    NASA Astrophysics Data System (ADS)

    Ukass, J.; Saks, T.; Popovs, K.

    2012-04-01

    In present study we attempt to verify the 3D geological model, which has been built on a variety of heterogeneous data sources for the Baltic Basin (BB). Data describing the displacement along the faults and associated thickness changes of the syntectonic strata is sparse and reflects only regional relevance (Brangulis & Konsins 2002). Borehole logs provide most reliable and comprehensive data source for reconstructing the structural geology of the Latvia sedimentary cover as sufficient quality seismic data is available only for the local scale structures. Based on the thickness analysis of the boreholes rough resolution 3D geological tectonic block model was developed to deconstruct the geological structure of the Latvia Caledonian sedimentary sequence. MOSYS modeling system was used for the geological structure modeling, developed within the PUMA project (Sennikovs et al, 2011). Algorithmic genetic approach was applied to interpolate data of well logs as strata volume and sequentially to reconstruct the post-deformation situation. This approach allows modifying model construction in any step and all processes are fully documented and are repeatable. Geometrical model consists of 33 tectonic blocks bordered by the faults which were distributed by interpreting displacement amount of the blocks along the faults providing an opportunity to characterize common tectonic evolution. The study results indicate insignificant thickness change of the Ordovician and Silurian strata along the faults suggesting that major slip event along the faults occurred during the late Silurian and early Devonian, and some secondary fault reactivation during the middle Devonian Narva time. Uplift of the territory during this time is confirmed by the presence of the regional unconformity. Constructed rough resolution 3D geometrical model suggests shortening along the horizontal axis approximately 10 - 20% but most of the shortening has occurred in the central-west part of Latvia where it

  11. Complexity and Intermittent Turbulence in Space Plasmas

    NASA Technical Reports Server (NTRS)

    Chang, Tom; Tam, Sunny W. Y.; Wu, Cheng-Chin

    2004-01-01

    Sporadic and localized interactions of coherent structures arising from plasma resonances can be the origin of "complexity" of the coexistence of non- propagating spatiotemporal fluctuations and propagating modes in space plasmas. Numerical simulation results are presented to demonstrate the intermittent character of the non-propagating fluctuations. The technique of the dynamic renormalization-group is introduced and applied to the study of scale invariance of such type of multiscale fluctuations. We also demonstrate that the particle interactions with the intermittent turbulence can lead to the efficient energization of the plasma populations. An example related to the ion acceleration processes in the auroral zone is provided.

  12. Formulation and stability evaluation of 3D alginate beads potentially useful for cumulus-oocyte complexes culture.

    PubMed

    Dorati, Rossella; Genta, Ida; Ferrari, Michela; Vigone, Giulia; Merico, Valeria; Garagna, Silvia; Zuccotti, Maurizio; Conti, Bice

    2016-01-01

    Ovarian follicle encapsulation in synthetic or natural matrixes based on biopolymers is potentially a promising approach to in vitro maturation (IVM) process, since it maintains follicle 3D organisation by preventing its flattening and consequent disruption of gap junctions, preserving the functional relationship between oocyte and companion follicle cells. The aim of the work was to optimise physico-chemical parameters of alginate microcapsules for perspective IVM under 3D environments. On this purpose alginate and cross-linking agent concentrations were investigated. Alginate concentration between 0.75% and 0.125% w/w and Mg(2+), Ba(2+), Ca(2+ )at concentration between 100 and 20 mM were tested. Follicle encapsulation was obtained by on purpose modified diffusion setting gelation technique, and evaluated together with beads, chemical and mechanical stability in standard and stressing conditions. Beads permeability was tested towards albumin, fetuin, pyruvate, glucose, pullulan. Results demonstrated that 0.25% alginate cross-linked in 100 mM CaCl2 beads is suitable to follicle encapsulation. PMID:26791322

  13. Assembly and property research on seven 0D–3D complexes derived from imidazole dicarboxylate and 1,2-bi(pyridin-4-yl)ethene

    SciTech Connect

    Mu, Bao; Li, Qian; Lv, Lei; Yang, Dan-Dan; Wang, Qing; Huang, Ru-Dan

    2015-03-15

    The hydrothermal reaction of transition metals, 1H-imidazole-4,5-dicarboxylic acid (H{sub 3}ImDC) and 1,2-bi(pyridin-4-yl)ethene (bpe) affords a series of new complexes, namely, [Mn(HImDC)(bpe)(H{sub 2}O)] (1), [M(H{sub 2}ImDC){sub 2}(H{sub 2}O){sub 2}]·(bpe) (M=Fe(2), Co(3), Zn(4), Cd(6)), [Zn{sub 3}(ImDC){sub 2}(bpe)(H{sub 2}O)]·3H{sub 2}O (5) and [Cd(H{sub 2}ImDC)(bpe)] (7), which are characterized by elemental analyses, IR, TG, XRPD and single crystal X-ray diffraction. Complex 1 exhibits a one dimensional (1D) zigzag chain with two types of irregular rings, and the 1D chains are linked to form a three dimensional (3D) supramolecular framework by the hydrogen bonding interactions (O–H∙∙∙O and O–H∙∙∙N). Complexes 2–4 and 6 are isomorphous, and they display the mononuclear structures. In these complexes, the O–H∙∙∙O and O–H∙∙∙N hydrogen bonds play an important role in sustaining the whole 3D supramolecular frameworks. Complex 5 shows a (3,3)-connected 3D framework with (10{sup 3}) topology, and the lattice water molecules as guest molecules exist in the 3D framework. Complex 7 is a wave-like two dimensional (2D) structure, in which the adjacent 1D chains point at the opposite directions. Moreover, the fluorescent properties of complexes 1–7 and the magnetic property of 1 have been investigated. The water vapor adsorption for complex 5 has been researched at 298 K. - Graphical abstract: Seven new complexes based on different structural characteristics have been hydrothermally synthesized by the mixed ligands. The fluorescent properties, the magnetic property and the water vapor adsorption have been investigated. - Highlights: • The semi-rigid ligand with C=C bonds and imidazole dicarboxylates with some advantages have been used. • A series of new complexes with different structural characteristics have been discussed in detail. • The fluorescent properties, the magnetic property and the water vapor adsorption have been

  14. M3D-C1 simulations of plasma response in ELM-mitigated ASDEX Upgrade and DIII-D discharges

    NASA Astrophysics Data System (ADS)

    Lyons, B. C.; Ferraro, N. M.; Haskey, S. R.; Logan, N. C.

    2015-11-01

    The extended magnetohydrodynamics (MHD) code M3D-C1 is used to study the time-independent, linear response of tokamak equilibria to applied, 3D magnetic perturbations. In doing so, we seek to develop a more complete understanding of what MHD phenomena are responsible for the mitigation and suppression of edge-localized modes (ELMs) and to explain why the success of ELM suppression experiments differs both within a single tokamak and across different tokamaks. We consider such experiments on ASDEX Upgrade and DIII-D. We examine how resonant and non-resonant plasma responses are affected by varying the relative magnitude and phase of sets of magnetic coils. The importance of two-fluid effects, rotation profiles, plasma β, collisionality, bootstrap current profiles, and various numerical parameters are explored. The results are verified against other MHD codes (e.g., IPEC, MARS), correlated to observations of ELM mitigation or suppression, and validated against observed magnetic responses. Work supported in part by US DOE under DE-FC02-04ER54698, DE-AC02-09CH11466, and the FES Postdoctoral Research Program.

  15. Three dimensional complex plasma structures in a combined radio frequency and direct current discharge

    NASA Astrophysics Data System (ADS)

    Mitic, S.; Klumov, B. A.; Khrapak, S. A.; Morfill, G. E.

    2013-04-01

    We report on the first detailed analysis of large three dimensional (3D) complex plasma structures in experiments performed in pure rf and combined rf+dc discharge modes. Inductively coupled plasma is generated by an rf coil wrapped around the vertically positioned cylindrical glass tube at a pressure of 0.3 mbar. In addition, dc plasma can be generated by applying voltage to the electrodes at the ends of the tube far from the rf coil. The injected monodisperse particles are levitated in the plasma below the coil. A scanning laser sheet and a high resolution camera are used to determine the 3D positions of about 105 particles. The observed bowl-shaped particle clouds reveal coexistence of various structures, including well-distinguished solid-like, less ordered liquid-like, and pronounced string-like phases. New criteria to identify string-like structures are proposed.

  16. Three dimensional complex plasma structures in a combined radio frequency and direct current discharge

    SciTech Connect

    Mitic, S.; Morfill, G. E.; Klumov, B. A.; Khrapak, S. A.

    2013-04-15

    We report on the first detailed analysis of large three dimensional (3D) complex plasma structures in experiments performed in pure rf and combined rf+dc discharge modes. Inductively coupled plasma is generated by an rf coil wrapped around the vertically positioned cylindrical glass tube at a pressure of 0.3 mbar. In addition, dc plasma can be generated by applying voltage to the electrodes at the ends of the tube far from the rf coil. The injected monodisperse particles are levitated in the plasma below the coil. A scanning laser sheet and a high resolution camera are used to determine the 3D positions of about 10{sup 5} particles. The observed bowl-shaped particle clouds reveal coexistence of various structures, including well-distinguished solid-like, less ordered liquid-like, and pronounced string-like phases. New criteria to identify string-like structures are proposed.

  17. New method for detection of complex 3D fracture motion - Verification of an optical motion analysis system for biomechanical studies

    PubMed Central

    2012-01-01

    Background Fracture-healing depends on interfragmentary motion. For improved osteosynthesis and fracture-healing, the micromotion between fracture fragments is undergoing intensive research. The detection of 3D micromotions at the fracture gap still presents a challenge for conventional tactile measurement systems. Optical measurement systems may be easier to use than conventional systems, but, as yet, cannot guarantee accuracy. The purpose of this study was to validate the optical measurement system PONTOS 5M for use in biomechanical research, including measurement of micromotion. Methods A standardized transverse fracture model was created to detect interfragmentary motions under axial loadings of up to 200 N. Measurements were performed using the optical measurement system and compared with a conventional high-accuracy tactile system consisting of 3 standard digital dial indicators (1 μm resolution; 5 μm error limit). Results We found that the deviation in the mean average motion detection between the systems was at most 5.3 μm, indicating that detection of micromotion was possible with the optical measurement system. Furthermore, we could show two considerable advantages while using the optical measurement system. Only with the optical system interfragmentary motion could be analyzed directly at the fracture gap. Furthermore, the calibration of the optical system could be performed faster, safer and easier than that of the tactile system. Conclusion The PONTOS 5 M optical measurement system appears to be a favorable alternative to previously used tactile measurement systems for biomechanical applications. Easy handling, combined with a high accuracy for 3D detection of micromotions (≤ 5 μm), suggests the likelihood of high user acceptance. This study was performed in the context of the deployment of a new implant (dynamic locking screw; Synthes, Oberdorf, Switzerland). PMID:22405047

  18. Vortex formation in a complex plasma

    NASA Astrophysics Data System (ADS)

    Ishihara, Osamu

    Complex plasma experiments in ground-based laboratories as well as in microgravity conditions have shown the formation of vortex structures in various conditions (e.g., 1,2,3,4). The vortex structures formed in a complex plasma are visible by naked eyes with the help of irradiating laser and the individual dust particles in the structure give us the opportunity to study detailed physics of the commonly observed natural phenomena known such as tornadoes, typhoons, hurricanes and dust devils. Based on the Navier-Stokes equation with proper complex plasma conditions we analyze as much as possible in a universal way the vortex structure and clarifies the role of the controlling parameters like flow velocity and external magnetic field. 1. G. E. Morfill,H. M. Thomas, U. Konopka,H. Rothermel, M. Zuzic, A. Ivlev, and J. Goree, Phys,. Rev. Lett. 83, 1598 (1999). 2. E. Nebbat and R. Annou, Phys. Plasmas 17, 093702 (2010). 3. Y. Saitou and O. Ishihara, Phys. Rev. Lett. 111, 185003 (2013). 4. V. N. Tsytovich and N. G. Gusein-zade, Plasma Phys. Rep. 39, 515 (2013).

  19. Complex Plasma Research Under Extreme Conditions

    SciTech Connect

    Ishihara, Osamu

    2008-09-07

    Complex plasma research under extreme conditions is described. The extreme conditions include low-dimensionality for self-organized structures of dust particles, dust magnetization in high magnetic field, criticality in phase transition, and cryogenic environment for Coulomb crystals and dust dynamics.

  20. Characteristics of capacitance-micro-displacement for model of complex interior surface of the 3D Taiji ball and its applications

    NASA Astrophysics Data System (ADS)

    Zhu, Ruo-Gu; Jiang, Kun; Qing, Zhao-Bo; Liu, Yue-Hui; Yan, Jun

    2006-11-01

    Taiji image originated from ancient China. It is not only the Taoism emblem but also the ancient graphic presentation sign to everything origin. It either has a too far-reaching impact on traditional culture of China, or is influencing the development of current natural science. On the basis of analyzing the classical philosophic theory of two-dimensional (2-D) Taiji image, we developed it into the model of complex interior surface-three-dimensional (3-D) Taiji ball, and explored its possible applications. Combining modern mathematics and physics knowledge, we have studied on the physical meaning of 3-D Taiji ball, thus the plane change of original Taiji image is developed into space change which is more close to the real world. The change layers are obvious increased notably, and the amount of information included in this model increases correspondingly. We also realized a special paper 3-D Taiji ball whose surface is coved with metal foil by means of laser manufacture. A new experiment set-up for measuring micro displace has been designed and constituted thus the relation between capacitance and micro displacement for the 3-D Taiji ball has performed. Experimental and theoretical analyses are also finished. This models of 3-D Taiji ball for physical characteristics are the first time set up. Experimental data and fitting curves between capacitance and micro displacement for the special paper Taiji ball coved with metal foil are suggested. It is shown that the special Taiji ball has less leakage capacitance or more strengthen electric field than an ordinary half ball capacitance. Finally their potential applied values are explored.

  1. Determining the Architecture of a Protein-DNA Complex by Combining FeBABE Cleavage Analyses, 3-D Printed Structures, and the ICM Molsoft Program.

    PubMed

    James, Tamara; Hsieh, Meng-Lun; Knipling, Leslie; Hinton, Deborah

    2015-01-01

    Determining the structure of a protein-DNA complex can be difficult, particularly if the protein does not bind tightly to the DNA, if there are no homologous proteins from which the DNA binding can be inferred, and/or if only portions of the protein can be crystallized. If the protein comprises just a part of a large multi-subunit complex, other complications can arise such as the complex being too large for NMR studies, or it is not possible to obtain the amounts of protein and nucleic acids needed for crystallographic analyses. Here, we describe a technique we used to map the position of an activator protein relative to the DNA within a large transcription complex. We determined the position of the activator on the DNA from data generated using activator proteins that had been conjugated at specific residues with the chemical cleaving reagent, iron bromoacetamidobenzyl-EDTA (FeBABE). These analyses were combined with 3-D models of the available structures of portions of the activator protein and B-form DNA to obtain a 3-D picture of the protein relative to the DNA. Finally, the Molsoft program was used to refine the position, revealing the architecture of the protein-DNA within the transcription complex. PMID:26404142

  2. Plasma-material interactions: A Langmuir probe analysis of a cylindrical SiO(2) deposition system and a computational study using VFTRIM3D

    NASA Astrophysics Data System (ADS)

    Turkot, Robert Bruce, Jr.

    This dissertation is broken into two sections describing, first, a computer code simulating ion-surface interactions, VFTRIM3D, and, second, an experimental Langmuir probe analysis of a cylindrical SiOsb2 deposition system. VFTRIM3D is a 3-dimensional, Monte-Carlo, binary collision code employing fractal algorithms used to simulate atomic-scale surface roughness. This work applies this code to studies of incident ion energies in the 10's to 100's of eV on various targets and comparisons to experimental data prove its dependability for such simulations. The experimental portion of this thesis includes the development and investigation of a cylindrical SiOsb2 deposition system used to deposit gas permeation barrier thin films onto PET bottles. The plasma analysis is done utilizing time- and spatially resolved Langmuir probe techniques. In order to study the characteristics of the dielectric deposition plasma, a "hot" Langmuir probe was developed to acquire typical Langmuir probe data during SiOsb2 deposition. The SiOsb2 films deposited in this system are analyzed for their gas permeation qualities and are correlated to the plasma properties gathered using Langmuir probes as well as the gas, pressure, and time recipes used to produce them. It is found in this work that the application of SiOsb2 films onto flexible PET bottles using the fashion explained herein results in a decrease in the gas permeation characteristics of the SiOsb2-PET membrane as desired, but is found to be independent of the thickness of the SiOsb2 present. This limit is found to be caused by cracks and pinhole defects across the SiOsb2 film that permit uninhibited gas flow directly to the PET bottle.

  3. A novel ultra-thin 3D detector—For plasma diagnostics at JET and ITER tokamaks

    NASA Astrophysics Data System (ADS)

    García, Francisco; Pelligrini, G.; Balbuena, J.; Lozano, M.; Orava, R.; Ullan, M.

    2009-08-01

    A novel ultra-thin silicon detector called U3DTHIN has been designed and built for applications that range from Neutral Particle Analyzers (NPA) used in Corpuscular Diagnostics of High Temperature Plasma to very low X-ray spectroscopy. The main purpose of this detector is to provide a state-of-the-art solution to upgrade the current detector system of the NPAs at JET and also to pave the road for the future detection systems of the ITER experimental reactor. Currently the NPAs use a very thin scintillator-photomultiplier tube [F. García, S.S. Kozlovsky, D.V. Balin, Background Properties of CEM, MCP and PMT detectors at n-γ irradiation. Preprint PNPI-2392, Gatchina, 2000, p. 9 [1]; F. García, S.S. Kozlovsky, V.V. Ianovsky, Scintillation Detectors with Low Sensitivity to n-γ Background. Preprint PNPI-2391, Gatchina, 2000, p. 8 [2

  4. Monitoring the formation of carbide crystal phases during the thermal decomposition of 3d transition metal dicarboxylate complexes

    SciTech Connect

    Huba, ZJ; Carpenter, EE

    2014-06-06

    Single molecule precursors can help to simplify the synthesis of complex alloys by minimizing the amount of necessary starting reagents. However, single molecule precursors are time consuming to prepare with very few being commercially available. In this study, a simple precipitation method is used to prepare Fe, Co, and Ni fumarate and succinate complexes. These complexes were then thermally decomposed in an inert atmosphere to test their efficiency as single molecule precursors for the formation of metal carbide phases. Elevated temperature X-ray diffraction was used to identify the crystal phases produced upon decomposition of the metal dicarboxylate complexes. Thermogravimetric analysis coupled with an infrared detector was used to identify the developed gaseous decomposition products. All complexes tested showed a reduction from the starting M2+ oxidation state to the M oxidation state, upon decomposition. Also, each complex tested showed CO2 and H2O as gaseous decomposition products. Nickel succinate, iron succinate, and iron fumarate complexes were found to form carbide phases upon decomposition. This proves that transition metal dicarboxylate salts can be employed as efficient single molecule precursors for the formation of metal carbide crystal phases.

  5. PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.

    PubMed

    Baspinar, Alper; Cukuroglu, Engin; Nussinov, Ruth; Keskin, Ozlem; Gursoy, Attila

    2014-07-01

    The PRISM web server enables fast and accurate prediction of protein-protein interactions (PPIs). The prediction algorithm is knowledge-based. It combines structural similarity and accounts for evolutionary conservation in the template interfaces. The predicted models are stored in its repository. Given two protein structures, PRISM will provide a structural model of their complex if a matching template interface is available. Users can download the complex structure, retrieve the interface residues and visualize the complex model. The PRISM web server is user friendly, free and open to all users at http://cosbi.ku.edu.tr/prism. PMID:24829450

  6. 3D image restoration for confocal microscopy: toward a wavelet deconvolution for the study of complex biological structures

    NASA Astrophysics Data System (ADS)

    Boutet de Monvel, Jacques; Le Calvez, Sophie; Ulfendahl, Mats

    2000-05-01

    Image restoration algorithms provide efficient tools for recovering part of the information lost in the imaging process of a microscope. We describe recent progress in the application of deconvolution to confocal microscopy. The point spread function of a Biorad-MRC1024 confocal microscope was measured under various imaging conditions, and used to process 3D-confocal images acquired in an intact preparation of the inner ear developed at Karolinska Institutet. Using these experiments we investigate the application of denoising methods based on wavelet analysis as a natural regularization of the deconvolution process. Within the Bayesian approach to image restoration, we compare wavelet denoising with the use of a maximum entropy constraint as another natural regularization method. Numerical experiments performed with test images show a clear advantage of the wavelet denoising approach, allowing to `cool down' the image with respect to the signal, while suppressing much of the fine-scale artifacts appearing during deconvolution due to the presence of noise, incomplete knowledge of the point spread function, or undersampling problems. We further describe a natural development of this approach, which consists of performing the Bayesian inference directly in the wavelet domain.

  7. A series of rare earth complexes with novel non-interpenetrating 3D networks: synthesis, structures, magnetic and optical properties.

    PubMed

    Wei, Xiao-Hua; Yang, Lin-Yan; Liao, Sheng-Yun; Zhang, Ming; Tian, Jin-Lei; Du, Pei-Yao; Gu, Wen; Liu, Xin

    2014-04-21

    A series of metal-organic framework {Ln(BCPBA)(H2O)}n {Ln = Nd (1), Sm (2), Eu (3), Tb (4), Dy (5)}; {[Ln(BCPBA)(H2O)](H2O)}n {Ln = Pr (6), Gd (7)} have been synthesized through the hydrothermal synthesis method. These compounds possess non-interpenetrating 3D networks with 10.1438 Å× 17.9149 Å rhombic channels along the [001] direction. The results of temperature-dependent magnetic susceptibility measurements indicate that compounds 4 and 7 exhibit Ln(III)Ln(III) antiferromagnetic interactions, while compound 5 exhibits Ln(III)Ln(III) ferromagnetic interactions. Frequency dependent out-of-phase signals were observed in alternating current (ac) magnetic susceptibility measurements which indicate that they have slow magnetic relaxation characteristics. The luminescent properties of 1, 2, 3, 4, and 5 are also discussed. Due to the good match between the lowest triplet state of the ligand and the resonant energy level of the lanthanide ion, compound 4 has longer fluorescence lifetime (τ1 = 400.0000 ms, τ2 = 1143.469 ms) and higher quantum yield (Φ = 42%) compared with other compounds. PMID:24572766

  8. Effects of simple and complex motion patterns on gene expression of chondrocytes seeded in 3D scaffolds.

    PubMed

    Grad, Sibylle; Gogolewski, Sylwester; Alini, Mauro; Wimmer, Markus A

    2006-11-01

    This study investigated the effect of unidirectional and multidirectional motion patterns on gene expression and molecule release of chondrocyte-seeded 3D scaffolds. Resorbable porous polyurethane scaffolds were seeded with bovine articular chondrocytes and exposed to dynamic compression, applied with a ceramic hip ball, alone (group 1), with superimposed rotation of the scaffold around its cylindrical axis (group 2), oscillation of the ball over the scaffold surface (group 3), or oscillation of ball and scaffold in phase difference (group 4). Compared with group 1, the proteoglycan 4 (PRG4) and cartilage oligomeric matrix protein (COMP) mRNA expression levels were markedly increased by ball oscillation (groups 3 and 4). Furthermore, the collagen type II mRNA expression was enhanced in the groups 3 and 4, while the aggrecan and tissue inhibitor of metalloproteinase-3 (TIMP-3) mRNA expression levels were upregulated by multidirectional articular motion (group 4). Ball oscillation (groups 3 and 4) also increased the release of PRG4, COMP, and hyaluronan (HA) into the culture media. This indicates that the applied stimuli can contribute to the maintenance of the chondrocytic phenotype of the cells. The mechanical effects causing cell stimulation by applied surface motion might be related to fluid film buildup and/or frictional shear at the scaffold-ball interface. It is suggested that the oscillating ball drags the fluid into the joint space, thereby causing biophysical effects similar to those of fluid flow. PMID:17518631

  9. Synthesis and Reactions of 3d Metal Complexes with the Bulky Alkoxide Ligand [OC(t)Bu2Ph].

    PubMed

    Bellow, James A; Yousif, Maryam; Fang, Dong; Kratz, Eric G; Cisneros, G Andrés; Groysman, Stanislav

    2015-06-15

    Treatment of NiCl2(dme) and NiBr2(dme) (dme = dimethoxyethane) with 2 equiv of LiOR (OR = OC(t)Bu2Ph) forms the distorted trigonal planar complexes [NiLiX(OR)2(THF)2] (THF = tetrahydrofuran) 5 (X = Cl) and 6 (X = Br). The reaction of CuX2 (X = Cl, Br) with 2 equiv of LiOR affords the Cu(I) product Cu4(OR)4 (7). The same product can be obtained using the Cu(I) starting material CuCl. NMR studies indicated that the reduction of Cu(II) to Cu(I) is accompanied by the oxidation of the alkoxide RO(-) to form the alkoxy radical RO(•), which subsequently forms tert-butyl phenyl ketone by β-scission. Treatment of compounds 1-4 ([M2Li2Cl2(OR)4], M = Cr-Co) with thallium hexafluorophosphate allowed the isolation of the distorted tetrahedral complexes of the form M(OR)2(THF)2 for M = Mn (8), Fe (9), and Co (10). Cyclic voltammetry performed on compounds 8-10 demonstrated irreversible oxidations for all complexes, with the iron complex 9 being the most reducing. Complex 9 shows a reactivity toward PhIO and Ph3SbS to form the corresponding dinuclear iron(III) complexes Fe2(O)(OR)4(THF)2 (11) and Fe2(S)(OR)4(THF)2 (12), respectively. X-ray structural studies were performed, showing that the Fe-O-Fe angle for complex 11 is 176.4(1)° and that the Fe-S-Fe angle for complex 12 is 164.83(3)°. PMID:26043187

  10. WE-F-16A-06: Using 3D Printers to Create Complex Phantoms for Dose Verification, Quality Assurance, and Treatment Planning System Commissioning in Radiotherapy

    SciTech Connect

    Kassaee, A; Ding, X; McDonough, J; Reiche, M; Witztum, A; Teo, B

    2014-06-15

    Purpose: To use 3D printers to design and construct complex geometrical phantoms for commissioning treatment planning systems, dose calculation algorithms, quality assurance (QA), dose delivery, and patient dose verifications. Methods: In radiotherapy, complex geometrical phantoms are often required for dose verification, dose delivery and calculation algorithm validation. Presently, fabrication of customized phantoms is limited due to time, expense and challenges in machining of complex shapes. In this work, we designed and utilized 3D printers to fabricate two phantoms for QA purposes. One phantom includes hills and valleys (HV) for verification of intensity modulated radiotherapy for photons, and protons (IMRT and IMPT). The other phantom includes cylindrical cavities (CC) of various sizes for dose verification of inhomogeneities. We evaluated the HV phantoms for an IMPT beam, and the CC phantom to study various inhomogeneity configurations using photon, electron, and proton beams. Gafcromic ™ films were used to quantify the dose distributions delivered to the phantoms. Results: The HV phantom has dimensions of 12 cm × 12 cm and consists of one row and one column of five peaks with heights ranging from 2 to 5 cm. The CC phantom has a size 10 cm × 14 cm and includes 6 cylindrical cavities with length of 7.2 cm and diameters ranging from 0.6 to 1.2 cm. The IMPT evaluation using the HV phantom shows good agreement as compared to the dose distribution calculated with treatment planning system. The CC phantom also shows reasonable agreements for using different algorithms for each beam modalities. Conclusion: 3D printers with submillimiter resolutions are capable of printing complex phantoms for dose verification and QA in radiotherapy. As printing costs decrease and the technology becomes widely available, phantom design and construction will be readily available to any clinic for testing geometries that were not previously feasible.

  11. The GLOBE 3D Genome Platform - towards a novel system-biological paper tool to integrate the huge complexity of genome organization and function.

    PubMed

    Knoch, Tobias A; Lesnussa, Michael; Kepper, Nick; Eussen, Hubert B; Grosveld, Frank G

    2009-01-01

    Genomes are tremendous co-evolutionary holistic systems for molecular storage, processing and fabrication of information. Their system-biological complexity remains, however, still largely mysterious, despite immense sequencing achievements and huge advances in the understanding of the general sequential, three-dimensional and regulatory organization. Here, we present the GLOBE 3D Genome Platform a completely novel grid based virtual "paper" tool and in fact the first system-biological genome browser integrating the holistic complexity of genomes in a single easy comprehensible platform: Based on a detailed study of biophysical and IT requirements, every architectural level from sequence to morphology of one or several genomes can be approached in a real and in a symbolic representation simultaneously and navigated by continuous scale-free zooming within a unique three-dimensional OpenGL and grid driven environment. In principle an unlimited number of multi-dimensional data sets can be visualized, customized in terms of arrangement, shape, colour, and texture etc. as well as accessed and annotated individually or in groups using internal or external data bases/facilities. Any information can be searched and correlated by importing or calculating simple relations in real-time using grid resources. A general correlation and application platform for more complex correlative analysis and a front-end for system-biological simulations both using again the huge capabilities of grid infrastructures is currently under development. Hence, the GLOBE 3D Genome Platform is an example of a grid based approach towards a virtual desktop for genomic work combining the three fundamental distributed resources: i) visual data representation, ii) data access and management, and iii) data analysis and creation. Thus, the GLOBE 3D Genome Platform is the novel system-biology oriented information system urgently needed to access, present, annotate, and to simulate the holistic genome

  12. Global magnetosphere-like 3D structure formation in kinetics by hot magnetized plasma flow characterized by shape of the particle distribution function

    NASA Astrophysics Data System (ADS)

    Gubchenko, Vladimir

    The task was to provide an analytical elementary magnetosphere-like model in kinetics for verification of the 3D EM PIC codes created for space/aerospace and HED plasmas applications. Kinetic approach versus cold MHD approach takes into account different behavior in the EM fields of resonant and non resonant particles in the velocity phase space, which appears via shape characteristics of the particle velocity distribution function (PVDF) and via the spatial dispersion effect forming the collisionless dissipation in the EM fields. The external flow is a hot collisionless plasma characterized by the particle velocity distribution function (PVDF) with different shapes: Maxwellian, kappa, etc. The flow is in a “hot regime”: it can be supersonic but its velocity remains less the thermal velocity of the electrons. The “internal” part of the magnetosphere formed by trapped particles is the prescribed 3D stationary magnetization considered as a spherical “quasiparticle” with internal magnetodipole and toroidal moments represented as a broadband EM driver. We obtain after the linearization of Vlasov/Maxwell equations a self-consistent 3D large scale kinetic solution of the classic problem. Namely, we: model the “outer” part of the magnetosphere formed by external hot plasma flow of the flyby particles. Solution of the Vlasov equation expressed via a tensor of dielectric permittivity of nonmagnetized and magnetized flowing plasma. Here, we obtain the direct kinetic dissipative effect of the magnetotail formation and the opposite diamagnetic effect of the magnetosphere “dipolization”. We get MHD wave cone in flow magnetized by external guiding magnetic (GM) field. Magnetosphere in our consideration is a 3D dissipative “wave” package structure of the skinned EM fields formed by the “waves” excited at frequency bands where we obtain negative values and singularities (resonances) of squared EM refractive index of the cold plasma. The hot regime

  13. Complex Plasmas with Two Distinct Particle Sizes

    NASA Astrophysics Data System (ADS)

    Smith, Bernard; Matthews, Lorin; Hyde, Truell

    2008-11-01

    Dust particle clouds are found in most plasma processing environments and many astrophysical environments. Dust particles suspended within such plasmas often acquire an electric charge from collisions with free electrons in the plasma. Depending upon the ratio of interparticle potential energy to average kinetic energy, charged dust particles can form a gaseous, liquid or crystalline structure with short to longer range ordering. The majority of past and current experiments employed monodisperse spheres to form their complex plasma system. As a result, the manner in which the basic thermodynamic properties of the system are dependent upon the overall dust grain size distribution is still not well understood. In this experiment, two-dimensional plasma crystals were formed from mixtures of 11.93 μm, 8.89 μm and 6.50 μm monodisperse particles in Argon plasma. The pair correlation function and vibrational data were determined for varying pressures and powers and then compared with measurements obtained for experiments employing a single size distribution of monodisperse spheres.

  14. Generalized Bohm Criterion for Electronegative Complex Plasma

    SciTech Connect

    Chekour, S.; Tahraoui, A.

    2011-11-29

    In this work, we have generalized the computation of Bohm criterion for electronegative complex plasma. For this, we have established a one-dimensional, unmagnetized and stationary theoretical model where the positive ions and dust particles are modeled by fluid equations. The electrons and negative ions are considered in thermodynamic equilibrium; therefore they obey to Boltzmann's statistic. In this case, the numerical results show that the generalized Bohm velocity is small compared to the classical value. For electronegative dusty plasma, the corrections are less important.

  15. Decharging of complex plasmas: first kinetic observations.

    PubMed

    Ivlev, A V; Kretschmer, M; Zuzic, M; Morfill, G E; Rothermel, H; Thomas, H M; Fortov, V E; Molotkov, V I; Nefedov, A P; Lipaev, A M; Petrov, O F; Baturin, Yu M; Ivanov, A I; Goree, J

    2003-02-01

    The first experiment on the decharging of a complex plasma in microgravity conditions was conducted. After switching off the rf power, in the afterglow plasma, ions and electrons rapidly recombine and leave a cloud of charged microparticles. Because of microgravity, the particles remain suspended in the experimental chamber for a sufficiently long time, allowing precise measurements of the rest particle charge. A simple theoretical model for the decharging is proposed which agrees quite well with the experiment results and predicts the rest charge at lower gas pressures. PMID:12633365

  16. Titan's plasma environment: 3D hybrid kinetic modeling of the TA flyby and comparison with CAPS-ELS and RPWS LP observations

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Sittler, E. C.; Hartle, R. E.; Cooper, J. F.; Simpson, D. G.

    2014-04-01

    In this report we discuss the global plasma environment of the TA flyby from the perspective of 3D hybrid modeling. In our model the background, pickup, and ionospheric ions are considered as particles, whereas the electrons are described as a fluid. Inhomogeneous photoionization, electron-impact ionization and charge exchange are included in our model. We also take into account the collisions between the ions and neutrals. Our modeling shows that mass loading of the background plasma (H+, O+) by pickup ions H2+, CH4+ and N2+ differs from the T9 encounter simulations when O+ ions are not introduced into the background plasma. In our hybrid modeling we use Chamberlain profiles for the atmospheric components. We also include a simple ionosphere model with average mass M=28 amu ions that were generated inside the ionosphere. Titan's interior is considered as a weakly conducting body. Special attention has been paid to comparing the simulated pickup ion density distribution with CAPS-ELS and with RPWS LP observations by the Cassini-Huygens spacecraft along the TA trajectory. Our modeling shows an asymmetry of the ion density distribution and the magnetic field, including the formation of Alfvén wing-like structures.

  17. EVALUATION OF THE COMPLEX TERRAIN DISPERSION MODEL AGAINST LABORATORY OBSERVATIONS: NEUTRAL FLOW OVER 2-D AND 3-D HILLS

    EPA Science Inventory

    A comparison is made of the predictions of the Complex Terrain Dispersion Model (CTDM) with wind-tunnel observations of flow and diffusion in a simulated neutral atmospheric boundary layer over two- and three-dimensional hills. The measure used to evaluate the ability of the mode...

  18. Combinatorial 3D Mechanical Metamaterials

    NASA Astrophysics Data System (ADS)

    Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin

    2015-03-01

    We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist of cubic lattices of anisotropic unit cells that can be tiled in a complex combinatorial fashion. We design and 3d-print this complex ordered mechanism, in which we combine elastic hinges and defects to tailor the mechanics of the material. Finally, we use this large design space to encode smart functionalities such as surface patterning and multistability.

  19. Dynamics of pickup ion velocity distribution function in Titan's plasma environment (TA encounter): 3D hybrid kinetic modeling and comparison with CAPS observations

    NASA Astrophysics Data System (ADS)

    Simpson, D. G.; Lipatov, A. S.; Sittler, E. C.; Hartle, R. E.; Cooper, J. F.

    2013-12-01

    Wave-particle interactions play a very important role in the plasma dynamics near Titan: mass loading, excitation of the low-frequency waves and the formation of the particle velocity distribution function, e.g. ring/shell-like distributions, etc. The kinetic approach is important for estimation of the collision processes e.g. a charge exchange. The particle velocity distribution function also plays a key role for understanding the observed particle fluxes. In this report we discuss the ion velocity distribution function dynamics from 3D hybrid modeling. The modeling is based on recent analysis of the Cassini Plasma Spectrometer (CAPS) ion measurements during the TA flyby. In our model the background ions, all pickup ions, and ionospheric ions are considered as particles, whereas the electrons are described as a fluid. Inhomogeneous photoionization, electron-impact ionization and charge exchange are included in our model. The temperatures of the background electrons and pickup electrons were also included into the generalized Ohm's law. We also take into account the collisions between the ions and neutrals. We use Chamberlain profiles for the exosphere's components and include a simple ionosphere model with M=28 ions that were generated inside the ionosphere. The moon is considered as a weakly conducting body. Our modeling shows that interaction between background plasma and pickup ions H+, H2+, CH4+ and N2+ has a more complicated structure than was observed in the T9 flyby and modeling due to the large gyroradius of the background O+ ions [1,2,3,4]. Special attention will be paid to comparing the simulated pickup ion velocity distribution with CAPS TA observations. We also compare our kinetic modeling with other hybrid and MHD modeling of Titan's environment. References [1] Sittler, E.C., et al., Energy Deposition Processes in Titan's Upper Atmosphere and Its Induced Magnetosphere. In: Titan from Cassini-Huygens, Brown, R.H., Lebreton J.P., Waite, J.H., Eds

  20. Solvothermal synthesis of uranium(VI) phases with aromatic carboxylate ligands: A dinuclear complex with 4-hydroxybenzoic acid and a 3D framework with terephthalic acid

    NASA Astrophysics Data System (ADS)

    Zhang, Yingjie; Karatchevtseva, Inna; Bhadbhade, Mohan; Tran, Toan Trong; Aharonovich, Igor; Fanna, Daniel J.; Shepherd, Nicholas D.; Lu, Kim; Li, Feng; Lumpkin, Gregory R.

    2016-02-01

    With the coordination of dimethylformamide (DMF), two new uranium(VI) complexes with either 4-hydroxybenzoic acid (H2phb) or terephthalic acid (H2tph) have been synthesized under solvothermal conditions and structurally characterized. [(UO2)2(Hphb)2(phb)(DMF)(H2O)3]·4H2O (1) has a dinuclear structure constructed with both pentagonal and hexagonal bipyramidal uranium polyhedra linked through a μ2-bridging ligand via both chelating carboxylate arm and alcohol oxygen bonding, first observation of such a coordination mode of 4-hydroxybenzoate for 5 f ions. [(UO2)(tph)(DMF)] (2) has a three-dimensional (3D) framework built with pentagonal bipyramidal uranium polyhedra linked with μ4-terephthalate ligands. The 3D channeled structure is facilitated by the unique carboxylate bonding with nearly linear C-O-U angles and the coordination of DMF molecules. The presence of phb ligands in different coordination modes, uranyl ions in diverse environments and DMF in complex 1, and tph ligand, DMF and uranyl ion in complex 2 has been confirmed by Raman spectroscopy. In addition, their thermal stability and photoluminescence properties have been investigated.

  1. Innovative 3D and 4D geological interpretation, modelling and visualisation techniques for subsurface characterisation of complex industrial sites - examples in the UK nuclear industry

    NASA Astrophysics Data System (ADS)

    Smith, Nicholas; Shevelan, John; Hodgetts, David; Head, William

    2013-04-01

    Industrial sites are typically complex, with numerous plants within their (often) relatively small footprint. The 'cramped' nature of these sites means that the geological characterisation that is essential to the development of environmental safety cases may be hampered by a lack of access to exposures, if they exist at all. Due to access limitations and potential for ground vibration affecting key plants, geophysical data are typically limited to those gathered from lower resolution surveys (e.g. electrical resistivity tomography) rather than those gathered from more informative vibroseis seismic reflection surveys. Thus, whilst many industrial sites may possess numerous intrusive boreholes (Sellafield, perhaps the UK's most complex industrial site, has over 3000), there is a lack of ties to either high resolution geophysical data, or important regional lithostratigraphic data provided by exposure of key sequences. This poses a conundrum: the hydrogeological 3D and 4D numerical models required to show the predicted migration paths of potential contamination within the subsurface require the best geological understanding possible, yet without high resolution geophysical data or geological exposure within the sites themselves geological interpretation is often restricted to attempting to correlate between boreholes that may be tens to hundreds of metres apart and only a few metres deep, which one could assume may not provide a good geological understanding. In this paper, using examples from the nuclear industry, we describe how the use of outcrop analogues and innovative GIS-based, 3D/4D geological interpretation, characterisation, modelling and visualisation techniques goes some way to addressing these issues. Regional outcrops of Triassic sandstone and unconsolidated Quaternary sequences are ideal analogues for unexposed sequences underlying key nuclear sites in West Cumbria (UK), providing important sedimentological (and depositional), lithostratigraphic and

  2. Two 3D network complexes of Y(III) and Ce(III) with 2-fold interpenetration and reversible desorption-adsorption behavior of lattice water

    SciTech Connect

    Chu Wenjuan; He Yong; Zhao Qinghuan; Fan Yaoting; Hou Hongwei

    2010-10-15

    Two novel inorganic-organic 3D network, namely{l_brace}[Ln(L){sub 1.5}(H{sub 2}O){sub 2}].5H{sub 2}O{r_brace}n [Ln=Y (1), Ce (2); Ln(L){sub 1.5}(H{sub 2}O){sub 2}].5H{sub 2}O [Ln=Y (1), Ce (2)], have been prepared through the assembly of the ligand 1,2-bis[3-(1,2,4-triazolyl)-4-amino-5-carboxylmethylthio]ethane (H{sub 2}L) and lanthanide (III) salts under hydrothermal condition and structurally characterized by single-crystal X-ray diffractions. In complexes 1 and 2, the L{sup 2-} anions adopt three different coordination fashions (bidentate chelate, bidentate bridging and bidentate chelate bridging) connecting Ln(III) ions via the oxygen atoms from carboxylate moieties. Both 1 and 2 exhibit 3D network structures with 2-fold interpenetration. Interestingly, the reversible desorption-adsorption behavior of lattice water is significantly observed in the two compounds. The result shows their potential application as late-model water absorbent in the field of adsorption material. - Graphical abstract: Two inorganic-organic 3D network, namely {l_brace}[Ln(L){sub 1.5}(H{sub 2}O){sub 2}].5H{sub 2}O{r_brace}n [Ln=Y (1), Ce (2)], have been prepared under hydrothermal condition and structurally characterized by single-crystal X-ray diffractions. Both 1 and 2 exhibit 3D network structures with 2-fold interpenetration. Interestingly, the reversible desorption-adsorption behavior of lattice water is significantly observed in the two compounds. The result shows their potential application as late-model water absorbent in the field of adsorption material.

  3. Bow shock formation in a complex plasma.

    PubMed

    Saitou, Y; Nakamura, Y; Kamimura, T; Ishihara, O

    2012-02-10

    A bow shock is observed in a two-dimensional supersonic flow of charged microparticles in a complex plasma. A thin conducting needle is used to make a potential barrier as an obstacle for the particle flow in the complex plasma. The flow is generated and the flow velocity is controlled by changing a tilt angle of the device under the gravitational force. A void, microparticle-free region, is formed around the potential barrier surrounding the obstacle. The flow is bent around the leading edge of the void and forms an arcuate structure when the flow is supersonic. The structure is characterized by the bow shock as confirmed by a polytropic hydrodynamic theory as well as numerical simulation. PMID:22401079

  4. Pore-controlled formation of 0D metal complexes in anionic 3D metal-organic frameworks

    SciTech Connect

    Zhang, MW; Bosch, M; Zhou, HC

    2015-01-01

    The host-guest chemistry between a series of anionic MOFs and their trapped counterions was investigated by single crystal XRD. The PCN-514 series contains crystallographically identifiable metal complexes trapped in the pores, where their formation is controlled by the size and shape of the MOF pores. A change in the structure and pore size of PCN-518 indicates that the existence of guest molecules may reciprocally affect the formation of host MOFs.

  5. Improving and validating 3D models for the leaf energy balance in canopy-scale problems with complex geometry

    NASA Astrophysics Data System (ADS)

    Bailey, B.; Stoll, R., II; Miller, N. E.; Pardyjak, E.; Mahaffee, W.

    2014-12-01

    Plants cover the majority of Earth's land surface, and thus play a critical role in the surface energy balance. Within individual plant communities, the leaf energy balance is a fundamental component of most biophysical processes. Absorbed radiation drives the energy balance and provides the means by which plants produce food. Available energy is partitioned into sensible and latent heat fluxes to determine surface temperature, which strongly influences rates of metabolic activity and growth. The energy balance of an individual leaf is coupled with other leaves in the community through longwave radiation emission and advection through the air. This complex coupling can make scaling models from leaves to whole-canopies difficult, specifically in canopies with complex, heterogeneous geometries. We present a new three-dimensional canopy model that simultaneously resolves sub-tree to whole-canopy scales. The model provides spatially explicit predictions of net radiation exchange, boundary-layer and stomatal conductances, evapotranspiration rates, and ultimately leaf surface temperature. The radiation model includes complex physics such as anisotropic emission and scattering. Radiation calculations are accelerated by leveraging graphics processing unit (GPU) technology, which allows canopy-scale problems to be performed on a standard desktop workstation. Since validating the three-dimensional distribution of leaf temperature can be extremely challenging, we used several independent measurement techniques to quantify errors in measured and modeled values. When compared with measured leaf temperatures, the model gave a mean error of about 2°C, which was close to the estimated measurement uncertainty.

  6. GRID3D-v2: An updated version of the GRID2D/3D computer program for generating grid systems in complex-shaped three-dimensional spatial domains

    NASA Technical Reports Server (NTRS)

    Steinthorsson, E.; Shih, T. I-P.; Roelke, R. J.

    1991-01-01

    In order to generate good quality systems for complicated three-dimensional spatial domains, the grid-generation method used must be able to exert rather precise controls over grid-point distributions. Several techniques are presented that enhance control of grid-point distribution for a class of algebraic grid-generation methods known as the two-, four-, and six-boundary methods. These techniques include variable stretching functions from bilinear interpolation, interpolating functions based on tension splines, and normalized K-factors. The techniques developed in this study were incorporated into a new version of GRID3D called GRID3D-v2. The usefulness of GRID3D-v2 was demonstrated by using it to generate a three-dimensional grid system in the coolent passage of a radial turbine blade with serpentine channels and pin fins.

  7. 3-D ADI-FDTD modeling of GPR backscatter from complex targets for the training of artificial neural networks

    NASA Astrophysics Data System (ADS)

    Sassen, D. S.; Everett, M. E.

    2007-12-01

    Artificial neural networks can provide approximate solutions to ground-penetrating radar (GPR) problems in cases where real time performance is needed. Examples include discrimination of landmines or UXO's, and in circumstances that require a high number of successive forward problems, for example inversion or imaging. The training of neural networks to work within even a limited range of targets and electromagnetic properties requires a large set of successive examples generated from numerical methods such as finite difference time domain (FDTD). The traditional FDTD technique suffers from numerical dispersion unless time steps are kept below the Courant stability limit. The accurate modeling of electromagnetic scattering by complex targets require a refined grid, subgrids, or conformal grids that can significantly increase computation time, making neural network training inefficient. A relatively recent FDTD technique, ADI-FDTD, uses implicit equations that help to cancel numerical dispersion and allow for unconditionally stable modeling of EM propagation and therefore is not bound by the Courant stability limit. The technique is especially efficient for the accurate modeling of complex targets. Our ADI-FDTD code includes the ability to refine the model grid and to implement a conformal gridding to improve model accuracy without effecting the overall computation time. We will explore the tradeoff in computation time and accuracy in modeling the GPR backscatter of various targets using both the ADI-FDTD technique and the traditional FDTD technique for the purpose of neural network training.

  8. Synthesis, Spectral Analysis and Preliminary in Vitro Evaluation of Some Tetrapyrrolic Complexes with 3d Metal Ions.

    PubMed

    Socoteanu, Radu; Manda, Gina; Boscencu, Rica; Vasiliu, Georgiana; Oliveira, Anabela Sousa

    2015-01-01

    In this paper, two tetrapyrrolic complexes, Zn(II)-5-(3-hydroxyphenyl)-10,15,20-tris-(4-acetoxy-3-methoxyphenyl)porphyrin and Cu(II)-5-(3-hydroxyphenyl)-10,15,20-tris-(4-acetoxy-3-methoxyphenyl)porphyrin were synthesized, and characterized from a spectral and biological point of view. The study provided data concerning the behavior of identical external substituents vs. two different core insertions. Some of the properties of the proposed tetrapyrrolic structures were highlighted, having photodynamic therapy of cancer as a targeted biomedical application. Elemental analysis, NMR, FTIR and UV-Vis data in various solvents were provided. A preliminary in vitro study on normal and cancer cultured cells was carried out for biocompatibility assessment in dark conditions. The preliminary in vitro study performed on human peripheral mononuclear cells exposed to tetrapyrrolic compounds (2 µM) showed that the proposed compounds had a convenient cytotoxic profile on human normal peripheral blood mononuclear cells under dark conditions. Meanwhile, the investigated compounds reduced the number of metabolically active breast tumor MCF-7 cells, with the exception of Zn(II) complex-containing a symmetrical ligand. Accordingly, preliminary in vitro data suggest that the proposed tetrapyrrolic compounds are good candidates for PDT, as they limit tumor expansion even under dark conditions, whilst sparing normal cells. PMID:26343614

  9. Fabrication of Compositionally and Topographically Complex Robust Tissue Forms by 3D-Electrochemical Compaction of Collagen

    PubMed Central

    Younesi, Mousa; Islam, Anowarul; Kishore, Vipuil; Panit, Stefi; Akkus, Ozan

    2015-01-01

    Collagen solutions are phase-transformed to mechanically robust shell structures with curviplanar topographies using electrochemically induced pH gradients. The process enables rapid layer-by-layer deposition of collagen-rich mixtures over the entire field simultaneously to obtain compositionally diverse multilayered structures. In-plane tensile strength and modulus of the electrocompacted collagen sheet samples were 5200 -fold and 2300 -fold greater than that of uncompacted collagen samples. Out of plane compression tests showed 27 -fold and fold increase in compressive stress and 46 -fold increase in compressive modulus compared to uncompacted collagen sheets. Cells proliferated 4.9 times faster, and cellular area spread was 2.7 times greater on compacted collagen sheets. Electrocompaction also resulted in 2.9 times greater focal adhesion area than on regular collagen hydrogel. The reported improvements in the cell-matrix interactions with electrocompaction would serve to expedite the population of electrocompacted collagen scaffolds by cells. The capacity of the method to fabricate nonlinear curved topographies with compositional heterogeneous layers is demonstrated by sequential deposition of collagenhydroxyapatite layer over a collagen layer. The complex curved topography of the nasal structure is replicated by the electrochemical compaction method. The presented electrochemical compaction process is an enabling modality which holds significant promise for reconstruction of a wide spectrum of topographically complex systems such as joint surfaces, craniofacial defects, ears, nose or urogenital forms. PMID:26069162

  10. The SCEC 3D Community Fault Model (CFM-v5): An updated and expanded fault set of oblique crustal deformation and complex fault interaction for southern California

    NASA Astrophysics Data System (ADS)

    Nicholson, C.; Plesch, A.; Sorlien, C. C.; Shaw, J. H.; Hauksson, E.

    2014-12-01

    Southern California represents an ideal natural laboratory to investigate oblique deformation in 3D owing to its comprehensive datasets, complex tectonic history, evolving components of oblique slip, and continued crustal rotations about horizontal and vertical axes. As the SCEC Community Fault Model (CFM) aims to accurately reflect this 3D deformation, we present the results of an extensive update to the model by using primarily detailed fault trace, seismic reflection, relocated hypocenter and focal mechanism nodal plane data to generate improved, more realistic digital 3D fault surfaces. The results document a wide variety of oblique strain accommodation, including various aspects of strain partitioning and fault-related folding, sets of both high-angle and low-angle faults that mutually interact, significant non-planar, multi-stranded faults with variable dip along strike and with depth, and active mid-crustal detachments. In places, closely-spaced fault strands or fault systems can remain surprisingly subparallel to seismogenic depths, while in other areas, major strike-slip to oblique-slip faults can merge, such as the S-dipping Arroyo Parida-Mission Ridge and Santa Ynez faults with the N-dipping North Channel-Pitas Point-Red Mountain fault system, or diverge with depth. Examples of the latter include the steep-to-west-dipping Laguna Salada-Indiviso faults with the steep-to-east-dipping Sierra Cucapah faults, and the steep southern San Andreas fault with the adjacent NE-dipping Mecca Hills-Hidden Springs fault system. In addition, overprinting by steep predominantly strike-slip faulting can segment which parts of intersecting inherited low-angle faults are reactivated, or result in mutual cross-cutting relationships. The updated CFM 3D fault surfaces thus help characterize a more complex pattern of fault interactions at depth between various fault sets and linked fault systems, and a more complex fault geometry than typically inferred or expected from

  11. Recent developments in multi-layer flat knitting technology for waste free production of complex shaped 3D-reinforcing structures for composites

    NASA Astrophysics Data System (ADS)

    Trümper, W.; Lin, H.; Callin, T.; Bollengier, Q.; Cherif, C.; Krzywinski, S.

    2016-07-01

    Constantly increasing prices for raw materials and energy as well as the current discourse on the reduction of CO2-emissions places a special emphasis on the advantages of lightweight constructions and its resource conserving production methods. Fibre-reinforced composites are already seeing a number of applications in automobile, energy and mechanical engineering. Future applications within the named areas require greater material and energy efficiency and therefore manufacturing methods for textile preforms and lightweight constructions enabling an optimal arrangement of the reinforcing fibres while in the same time limiting waste to a minimum. One manufacturing method for textile reinforced preforms fulfilling quite many of the named requirements is the multilayer weft knitting technology. Multilayer weft knitted fabrics containing straight reinforcing yarns at least in two directions. The arrangement of these yarns is fixed by the loop yarn. Used yarn material in each knitting row is adaptable e. g. according to the load requirements or for the local integration of sensors. Draping properties of these fabrics can be varied within a great range and through this enabling draping of very complex shaped 3D-preforms without wrinkles from just one uncut fabric. The latest developments at ITM are concentrating on the development of a full production chain considering the 3D-CAD geometry, the load analysis, the generation of machine control programs as well as the development of technology and machines to enable the manufacturing of innovative net shape 3D-multilayer weft knitted fabrics such as complex shaped spacer fabrics and tubular fabrics with biaxial reinforcement.

  12. Scarce water resources and scarce data: Estimating recharge for a complex 3D groundwater flow model in arid regions

    NASA Astrophysics Data System (ADS)

    Gräbe, A. C.; Guttman, J.; Rödiger, T.; Siebert, C.; Merz, R.; Kolditz, O.

    2012-12-01

    Semi-arid to arid regions are usually characterized by a scarcity of precipitation and a lack of stream flow. Especially in desert environments, groundwater is one of the most important fresh water sources and its recharge is basically controlled by two main mechanisms: the direct regional infiltration of precipitation in the mountains and interdrainage areas in the first place and secondly the flood water infiltration through ephemeral channel beds (transmission loss). Due to extensive spatio-temporal data scarcity, direct quantitative estimations of groundwater recharge are often difficult to perform, and numerical models simulating the water fluxes, have to be applied to enable a quantitative approximation of the groundwater recharge. We made an assumption about the quantity of recharge for the subsurface catchment of the western Dead Sea escarpment, which is at the same time the input for the complex groundwater flow model of the Judea Group Aquifer. This can only be suggested if the hydrogeological situation in the tectonically complex region is fully understood. A number of simplified models of the Judea Group aquifer have been formulated and employed using a two-dimensional (one horizontal layered) numerical simulation of groundwater flow (Baida et al. 1978; Goldschtoff & Shachnai, 1980; Guttman, 2000; Laronne Ben-Itzhak & Gvirtzmann, 2005). However, all previous approaches focused only on a limited area of the Judea Group aquifer. We developed a high resolution regional groundwater flow model for the entire western basin of the Dead Sea. Whereas the structural model could be defined using a large geological dataset, the challenge was to generate the groundwater flow model with only limited well data. With the help of the scientific software OpenGeoSys (OGS) the challenge was reliably solved resulting in a simulation of the hydraulic characteristics (hydraulic conductivity and hydraulic head) of the cretaceous aquifer system, which was calibrated using PEST.

  13. High hardness BaCb-(BxOy/BN) composites with 3D mesh-like fine grain-boundary structure by reactive spark plasma sintering.

    PubMed

    Vasylkiv, Oleg; Borodianska, Hanna; Badica, Petre; Grasso, Salvatore; Sakka, Yoshio; Tok, Alfred; Su, Liap Tat; Bosman, Michael; Ma, Jan

    2012-02-01

    Boron carbide B4C powders were subject to reactive spark plasma sintering (also known as field assisted sintering, pulsed current sintering or plasma assisted sintering) under nitrogen atmosphere. For an optimum hexagonal BN (h-BN) content estimated from X-ray diffraction measurements at approximately 0.4 wt%, the as-prepared BaCb-(BxOy/BN) ceramic shows values of Berkovich and Vickers hardness of 56.7 +/- 3.1 GPa and 39.3 +/- 7.6 GPa, respectively. These values are higher than for the vacuum SPS processed B4C pristine sample and the h-BN -mechanically-added samples. XRD and electronic microscopy data suggest that in the samples produced by reactive SPS in N2 atmosphere, and containing an estimated amount of 0.3-1.5% h-BN, the crystallite size of the boron carbide grains is decreasing with the increasing amount of N2, while for the newly formed lamellar h-BN the crystallite size is almost constant (approximately 30-50 nm). BN is located at the grain boundaries between the boron carbide grains and it is wrapped and intercalated by a thin layer of boron oxide. BxOy/BN forms a fine and continuous 3D mesh-like structure that is a possible reason for good mechanical properties. PMID:22629879

  14. Plasma C3d levels of young farmers correlate with respirable dust exposure levels during normal work in swine confinement buildings.

    PubMed

    Hoffmann, Hans Jürgen; Iversen, Martin; Brandslund, Ivan; Sigsgaard, Torben; Omland, Øyvind; Oxvig, Claus; Holmskov, Uffe; Bjermer, Leif; Jensenius, Jens Christian; Dahl, Ronald

    2003-01-01

    Work in swine confinement buildings leads to an inflammatory response and may be associated with increased levels of acute phase proteins. We compared the inflammatory response of a control group of young former farm workers with age-matched former farm workers who had previously developed the lower airway symptoms of wheeze, cough, tightness of the chest during work in swine confinement buildings, and because of these symptoms had stopped work. Both groups were subjected to an experimental exposure in a swine confinement building for 3 hours. Complement activation and acute phase proteins were measured in blood samples and broncho-alveolar lavage. Plasma C3d levels correlated with respirable dust, significantly so for individual cases and for the whole cohort. Plasma C3, fibrinogen and alpha (1) -acid glycoprotein peaked 1 and 6 h after exposure start, mannan-binding lectin, C-reactive protein and alpha(1)-antitrypsin peaked after 2 h. Surfactant protein D (SP-D) and alpha (2) -macroglobulin were downregulated. In lavage, only SP-D, alpha (2)-macroglobulin and fibronectin were detected. FEV(1), FVC, TLC and FEV(25-75) did not vary during exposure. There was complement activation in response to respiratory dust, more so amongst cases than in the control group. Acute exposure, with work related levels of organic dust containing endotoxin, leads to a weak systemic inflammatory response. PMID:12852733

  15. Mono, bi- and trinuclear metal complexes derived from new benzene-1,4-bis(3-pyridin-2-ylurea) ligand. Spectral, magnetic, thermal and 3D molecular modeling studies

    NASA Astrophysics Data System (ADS)

    El-ghamry, Mosad A.; Saleh, Akila A.; Khalil, Saied M. E.; Mohammed, Amira A.

    2013-06-01

    New bis (pyridylurea) ligand, H2L, was synthesized by the reaction of ethylpyridine-2-carbamate (EPC) and p-phenylenediamine. The ligand was characterized by elemental analysis, IR, 1H NMR, electronic and mass spectra. Reaction of the prepared ligand with Co2+, Ni2+, Cu2+, Fe3+, VO2+ and UO22+ ions afforded mono, bi- and trinuclear metal complexes. Also, new mixed ligand complexes of the ligand H2L and 8-hydroxyquinoline (8-HQ) with Co2+, Ni2+, Cu2+ and Fe3+ ions were synthesized. The ligand behaves as bi- and tetradentate toward the transition metal ions, coordination via the pyridine sbnd N, the carbonyl sbnd O and/or the amidic sbnd N atoms in a non, mono- and bis-deprotonated form. The complexes were characterized by elemental and thermal analyses, IR, electronic and mass spectra as well as conductance and magnetic susceptibility measurements. The results showed that the metal complexes exhibited different geometrical arrangements such as square planar, tetrahedral, octahedral and square pyramidal arrangements. The Coats-Redfern equation was used to calculate the kinetic and thermodynamic parameters for the different thermal decomposition steps of some complexes. 3D molecular modeling of the ligand, H2L and a representative complex were studied.

  16. Documenting a Complex Modern Heritage Building Using Multi Image Close Range Photogrammetry and 3d Laser Scanned Point Clouds

    NASA Astrophysics Data System (ADS)

    Vianna Baptista, M. L.

    2013-07-01

    Integrating different technologies and expertises help fill gaps when optimizing documentation of complex buildings. Described below is the process used in the first part of a restoration project, the architectural survey of Theatre Guaira Cultural Centre in Curitiba, Brazil. To diminish time on fieldwork, the two-person-field-survey team had to juggle, during three days, the continuous artistic activities and performers' intense schedule. Both technologies (high definition laser scanning and close-range photogrammetry) were used to record all details in the least amount of time without disturbing the artists' rehearsals and performances. Laser Scanning was ideal to record the monumental stage structure with all of its existing platforms, light fixtures, scenery walls and curtains. Although scanned with high-definition, parts of the exterior façades were also recorded using Close Range Photogrammetry. Tiny cracks on the marble plaques and mosaic tiles, not visible in the point clouds, were then able to be precisely documented in order to create the exterior façades textures and damages mapping drawings. The combination of technologies and the expertise of service providers, knowing how and what to document, and what to deliver to the client, enabled maximum benefits to the following restoration project.

  17. Realistic primary and new productions in a 3D global biogeochemical model: biological complexity or physical forcing?

    NASA Astrophysics Data System (ADS)

    Popova, E. E.; Coward, A. C.

    2003-04-01

    A nitrogen-based, five compartment biological model has been coupled to a one degree OCCAM (Ocean Circulation and Climate Advanced Modelling Project) model with a KPP ("K profile parameterisation") of the vertical mixing. The biological model state variables are Phytoplankton, Zooplankton, Detritus, Nitrate, and Ammonium. A comparison of the solution with global satellite ocean colour shows that the model is capable of a realistic description of the main seasonal and regional patterns of the surface chlorophyll. Agreement is also good for satellite derived estimates of primary production. In situ data available from local study sites (such as BATS, NABE, India, Papa) are used for the detailed comparison of the model output with the observed ecosystem dynamics in different biological provinces. We discuss performance of the physical and biological model in contrasting areas of the World Ocean. In spite of the biological model being a very simple one, we are able to reproduce the major differences between ecosystem dynamics of these areas. We believe that the success of any global biogeochemical model is dependent first of all on the correct representation of the upper mixed layer (UML) dynamics. Without being able to reproduce contrasting UML regimes in different areas of the World Ocean (such as difference between the North Atlantic and Southern Ocean, or North Atlantic and North Pacific), increased complexity biological models are in danger of producing the right results by the wrong reason.

  18. ICPP: Approach for Understanding Complexity of Plasma

    NASA Astrophysics Data System (ADS)

    Sato, Tetsuya

    2000-10-01

    In this talk I wish to present an IT system that could promote Science of Complexity. In order to deal with a seemingly `complex' phenomenon, which means `beyond analytical manipulation', computer simulation is a viable powerful tool. However, complexity implies a concept beyond the horizon of reductionism. Therefore, rather than simply solving a complex phenomenon for a given boundary condition, one must establish an intelligent way of attacking mutual evolution of a system and its environment. NIFS-TCSC has been developing a prototype system that consists of supercomputers, virtual reality devices and high-speed network system. Let us explain this by picking up a global atmospheric circulation group, global oceanic circulation group and local weather prediction group. Local weather prediction group predicts the local change of the weather such as the creation of cloud and rain in the near future under the global conditions obtained by the global atmospheric and ocean groups. The global groups run simulations by modifying the local heat source/sink evaluated by the local weather prediction and then obtain the global conditions in the next time step. By repeating such a feedback performance one can predict the mutual evolution of the local system and its environment. Mutual information exchanges among multiple groups are carried out instantaneously by the networked common virtual reality space in which 3-D global and local images of the atmospheric and oceanic circulation and the cloud and rain maps are arbitrarily manipulated by any of the groups and commonly viewed. The present networking system has a great advantage that any simulation groups can freely and arbitrarily change their alignment, so that mutual evolution of any stratum system can become tractable by utilizing this network system.

  19. Synkinematic Temperature Estimates and Complex, 3d Strain Patterns in a Partially Molten Crust, ARAÇUAÍ Belt (se Brazil)

    NASA Astrophysics Data System (ADS)

    Cavalcante, G.; Vauchez, A. R.; Egydio-Silva, M.

    2013-12-01

    The Araçuaí belt was formed during the amalgamation of West Gondwana by the collision between the São Francisco and Congo cratons. Its eastern region is characterized by the presence of migmatites, leucogranites, granulites and migmatitic kinzigites that probably represent the record of a widespread partial melting of the middle to lower crust. Synkinematic temperatures obtained from the TitaniQ geothermometer suggest that the minimum temperatures for the crystallization of quartz grains are ~750°C. This temperature value combined with bulk rock composition of isolated leucosome of migmatites indicates that the viscosity of the anatectic rocks dropped to at least 1014 Pa s. Such low viscosity value suggests that approximately 30% melt volume was produced during orogeny. Detailed mineralogy investigation suggests a dominantly paramagnetic behavior for the migmatites and ferromagnetic for the granulites. Crystallographic preferred orientation (CPO) measurements using the EBSD (Electron Backscatter Diffraction) technique reveal that the magnetic foliation results from the preferred orientation of the biotite [001] axis oriented normal to the flow plane. Correspondence between [001] of feldspars and k1 (magnetic lineation) is due to the CPO of small inclusions of ilmenite that mimic the CPO of their host minerals. Correlation between k1 of the Anisotropy of Anhysteretic Remanent Magnetization (AARM) and k1 of the AMS demonstrates that, at the specimen scale, the magnetic lineation has a contribution of the anisotropy of the ferromagnetic minerals. Therefore, it is interpreted that the origin of the magnetic lineation is related to the CPO of biotite and feldspars, and less so, to the preferred alignment of ferromagnetic grains. AMS measurements performed to recover the mineral fabric and investigate the migmatitic flow field revealed a complex strain pattern in which it is possible to characterize three structural sectors. The north region (structural sector 1

  20. 3D Dynamic Rupture Simulation Across a Complex Fault System: the Mw7.0, 2010, Haiti Earthquake

    NASA Astrophysics Data System (ADS)

    Douilly, R.; Aochi, H.; Calais, E.; Freed, A. M.

    2013-12-01

    Earthquakes ruptures sometimes take place on a secondary fault and surprisingly do not activate an adjacent major one. The 1989 Loma Prieta earthquake is a classic case where rupture occurred on a blind thrust while the adjacent San Andreas Fault was not triggered during the process. Similar to Loma Prieta, the Mw7.0, January 12 2010, Haiti earthquake also ruptured a secondary blind thrust, the Léogâne fault, adjacent to the main plate boundary, the Enriquillo Plantain Garden Fault, which did not rupture during this event. Aftershock relocalizations delineate the Léogâne rupture with two north dipping segments with slightly different dip, where the easternmost segment had mostly dip-slip motion and the westernmost one had mostly strike-slip motion. In addition, an offshore south dipping structure inferred from the aftershocks to the west of the rupture zone coincides with the offshore Trois Baies reverse fault, a region of increase in Coulomb stress increase. In this study, we investigate the rupture dynamics of the Haiti earthquake in a complex fault system of multiple segments identified by the aftershock relocations. We suppose a background stress regime that is consistent with the type of motion of each fault and with the regional tectonic regime. We initiate a nucleation on the east segment of the Léogâne fault by defining a circular region with a 2 km radius where shear stress is slightly greater than the yield stress. By varying friction on faults and background stress, we find a range of plausible scenarios. In the absence of near-field seismic records of the event, we score the different models against the static deformation field derived from GPS and InSAR at the surface. All the plausible simulations show that the rupture propagates from the eastern to the western segment along the Léogâne fault, but not on the Enriquillo fault nor on the Trois Baies fault. The best-fit simulation shows a significant increase of shear stresses on the Trois Baies

  1. Agglomeration of microparticles in complex plasmas

    SciTech Connect

    Du, Cheng-Ran; Thomas, Hubertus M.; Ivlev, Alexei V.; Konopka, Uwe; Morfill, Gregor E.

    2010-11-15

    Agglomeration of highly charged microparticles was observed and studied in complex plasma experiments carried out in a capacitively coupled rf discharge. The agglomeration was caused by strong waves triggered in a particle cloud by decreasing neutral gas pressure. Using a high-speed camera during this unstable regime, it was possible to resolve the motion of individual microparticles and to show that the relative velocities of some particles were sufficiently high to overcome the mutual Coulomb repulsion and hence to result in agglomeration. After stabilizing the cloud again through the increase of the pressure, we were able to observe the aggregates directly with a long-distance microscope. We show that the agglomeration rate deduced from our experiments is in good agreement with theoretical estimates. In addition, we briefly discuss the mechanisms that can provide binding of highly charged microparticles in a plasma.

  2. Kinetics of wet sodium vapor complex plasma

    SciTech Connect

    Mishra, S. K.; Sodha, M. S.

    2014-04-15

    In this paper, we have investigated the kinetics of wet (partially condensed) Sodium vapor, which comprises of electrons, ions, neutral atoms, and Sodium droplets (i) in thermal equilibrium and (ii) when irradiated by light. The formulation includes the balance of charge over the droplets, number balance of the plasma constituents, and energy balance of the electrons. In order to evaluate the droplet charge, a phenomenon for de-charging of the droplets, viz., evaporation of positive Sodium ions from the surface has been considered in addition to electron emission and electron/ion accretion. The analysis has been utilized to evaluate the steady state parameters of such complex plasmas (i) in thermal equilibrium and (ii) when irradiated; the results have been graphically illustrated. As a significant outcome irradiated, Sodium droplets are seen to acquire large positive potential, with consequent enhancement in the electron density.

  3. Threshold Phenomena in a Throbbing Complex Plasma

    SciTech Connect

    Mikikian, Maxime; Coueedel, Lenaiec; Cavarroc, Marjorie; Tessier, Yves; Boufendi, Laiefa

    2010-08-13

    In complex plasmas, the trapped dust particle cloud is often characterized by a central dust-free region ('void'). The void induces a spatial inhomogeneity of the dust particle distribution and is at the origin of many intricate unstable phenomena. One type of this kind of behavior is the so-called heartbeat instability consisting of successive contractions and expansions of the void. This instability is characterized by a strong nonlinear dynamics which can reveal the occurrence of incomplete sequences corresponding to failed contractions. Experimental results based on high-speed imaging are presented for the first time and underline this threshold effect in both the dust cloud motion and the evolution of the plasma light emission.

  4. Disentangling the history of complex multi-phased shell beds based on the analysis of 3D point cloud data

    NASA Astrophysics Data System (ADS)

    Harzhauser, Mathias; Djuricic, Ana; Mandic, Oleg; Dorninger, Peter; Nothegger, Clemens; Székely, Balázs; Molnár, Gábor; Pfeifer, Norbert

    2015-04-01

    Shell beds are key features in sedimentary records throughout the Phanerozoic. The interplay between burial rates and population productivity is reflected in distinct degrees of shelliness. Consequently, shell beds may provide informations on various physical processes, which led to the accumulation and preservation of hard parts. Many shell beds pass through a complex history of formation being shaped by more than one factor. In shallow marine settings, the composition of shell beds is often strongly influenced by winnowing, reworking and transport. These processes may cause considerable time averaging and the accumulation of specimens, which have lived thousands of years apart. In the best case, the environment remained stable during that time span and the mixing does not mask the overall composition. A major obstacle for the interpretation of shell beds, however, is the amalgamation of shell beds of several depositional units in a single concentration, as typically for tempestites and tsunamites. Disentangling such mixed assemblages requires deep understanding of the ecological requirements of the taxa involved - which is achievable for geologically young shell beds with living relatives - and a statistic approach to quantify the contribution by the various death assemblages. Furthermore it requires understanding of sedimentary processes potentially involved into their formation. Here we present the first attempt to describe and decipher such a multi-phase shell-bed based on a high resolution digital surface model (1 mm) combined with ortho-photos with a resolution of 0.5 mm per pixel. Documenting the oyster reef requires precisely georeferenced data; owing to high redundancy of the point cloud an accuracy of a few mm was achieved. The shell accumulation covers an area of 400 m2 with thousands of specimens, which were excavated by a three months campaign at Stetten in Lower Austria. Formed in an Early Miocene estuary of the Paratethys Sea it is mainly composed

  5. Fdf in US3D

    NASA Astrophysics Data System (ADS)

    Otis, Collin; Ferrero, Pietro; Candler, Graham; Givi, Peyman

    2013-11-01

    The scalar filtered mass density function (SFMDF) methodology is implemented into the computer code US3D. This is an unstructured Eulerian finite volume hydrodynamic solver and has proven very effective for simulation of compressible turbulent flows. The resulting SFMDF-US3D code is employed for large eddy simulation (LES) on unstructured meshes. Simulations are conducted of subsonic and supersonic flows under non-reacting and reacting conditions. The consistency and the accuracy of the simulated results are assessed along with appraisal of the overall performance of the methodology. The SFMDF-US3D is now capable of simulating high speed flows in complex configurations.

  6. A method to characterize the 3D geometry of complex landslides in clayey soils: the Valoria, Super-Sauze and La Valette case studies

    NASA Astrophysics Data System (ADS)

    Daehne, A.; Travelletti, J.; Malet, J.-P.; Corsini, A.; Ronchetti, F.

    2009-04-01

    Bedrock geometry drastically influences the kinematic deformation pattern of slow-moving landslides exhibiting some flow characteristics. The development of extension and compression zones within the landslide body is largely controlled by the geometry (crests, bumps, hollows) and roughness of the topography covered by the moving mass. A challenge to progress in the forecast of such type of landslides is to precisely define 3D geometrical and geomechanical models. The objective of this work is to present a methodology for 3D geometrical modelling of the landslide structure, and to discuss the main possible errors in integrating multi-source and multi-resolution data in the modelling. The methodology is presented through the analysis of three landslides with similar geomorphological features (e.g. flow-like geomorphology) and development patterns (retrogression of the crown, roto-translational failures of the upper part, and translational movements in the lower part), and for which an extensive dataset of geophysical, geotechnical and geomorphological information is available. The three cases studies are the complex Valoria earth-slide-flow located in the Northern Apennines, the Super-Sauze and La Valette mudslides in the French South Alps. All three landslides are predominantly developed in a clay-shale soil formation. First, interpretation of the multi-data information, their resolution and accuracy is presented for the landslides. Second, a procedure to construct 3D geometrical models of the landslides is proposed (by using the Rockware's Rockworks geological modeller) and the influence of the interpolation algorithms is discussed. It is demonstrated that the model uncertainty is strongly depending on the density and distribution of the input data which vary for the three landslides. The quality of several geometrical models is then compared; a best-fit is achieved by using available geological and geomorphological site interpretation.

  7. Europeana and 3D

    NASA Astrophysics Data System (ADS)

    Pletinckx, D.

    2011-09-01

    The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  8. Multiple solutions in the theory of direct current glow discharges: Effect of plasma chemistry and nonlocality, different plasma-producing gases, and 3D modelling

    SciTech Connect

    Almeida, P. G. C.; Benilov, M. S.

    2013-10-15

    The work is aimed at advancing the multiple steady-state solutions that have been found recently in the theory of direct current (DC) glow discharges. It is shown that an account of detailed plasma chemistry and non-locality of electron transport and kinetic coefficients results in an increase of the number of multiple solutions but does not change their pattern. Multiple solutions are shown to exist for discharges in argon and helium provided that discharge pressure is high enough. This result indicates that self-organization in DC glow microdischarges can be observed not only in xenon, which has been the case until recently, but also in other plasma-producing gases; a conclusion that has been confirmed by recent experiments. Existence of secondary bifurcations can explain why patterns of spots grouped in concentric rings, observed in the experiment, possess in many cases higher number of spots in outer rings than in inner ones.

  9. The effect of spatial micro-CT image resolution and surface complexity on the morphological 3D analysis of open porous structures

    SciTech Connect

    Pyka, Grzegorz; Kerckhofs, Greet

    2014-01-15

    In material science microfocus X-ray computed tomography (micro-CT) is one of the most popular non-destructive techniques to visualise and quantify the internal structure of materials in 3D. Despite constant system improvements, state-of-the-art micro-CT images can still hold several artefacts typical for X-ray CT imaging that hinder further image-based processing, structural and quantitative analysis. For example spatial resolution is crucial for an appropriate characterisation as the voxel size essentially influences the partial volume effect. However, defining the adequate image resolution is not a trivial aspect and understanding the correlation between scan parameters like voxel size and the structural properties is crucial for comprehensive material characterisation using micro-CT. Therefore, the objective of this study was to evaluate the influence of the spatial image resolution on the micro-CT based morphological analysis of three-dimensional (3D) open porous structures with a high surface complexity. In particular the correlation between the local surface properties and the accuracy of the micro-CT-based macro-morphology of 3D open porous Ti6Al4V structures produced by selective laser melting (SLM) was targeted and revealed for rough surfaces a strong dependence of the resulting structure characteristics on the scan resolution. Reducing the surface complexity by chemical etching decreased the sensitivity of the overall morphological analysis to the spatial image resolution and increased the detection limit. This study showed that scan settings and image processing parameters need to be customized to the material properties, morphological parameters under investigation and the desired final characteristics (in relation to the intended functional use). Customization of the scan resolution can increase the reliability of the micro-CT based analysis and at the same time reduce its operating costs. - Highlights: • We examine influence of the image resolution

  10. Synthesizing 2D and 3D Selenidostannates in Ionic Liquids: The Synergistic Structure-Directing Effects of Ionic Liquids and Metal-Amine Complexes.

    PubMed

    Du, Cheng-Feng; Shen, Nan-Nan; Li, Jian-Rong; Hao, Min-Ting; Wang, Zi; Huang, Xiao-Ying

    2016-05-20

    Presented are the ionothermal syntheses, characterizations, and properties of a series of two- and three-dimensional selenidostannate compounds synergistically directed by metal-amine complex (MAC) cations and ionic liquids (ILs) of [Bmmim]Cl (Bmmim=1-butyl-2,3-dimethylimidazolium). Four selenidostannates, namely, 2D-(Bmmim)3 [Ni(en)3 ]2 [Sn9 Se21 ]Cl (1, en=ethylenediamine), 2D-(Bmmim)8 [Ni2 (teta)2 (μ-teta)]Sn18 Se42 (2, teta=triethylenetetramine), 2D-(Bmmim)4 [Ni(tepa)Cl]2 [Ni(tepa)Sn12 Se28 ] (3, tepa=tetraethylenepentamine), and 3D-(Bmmim)2 [Ni(1,2-pda)3 ]Sn8 Se18 (4, 1,2-pda=1,2-diaminopropane), were obtained. Single-crystal X-ray diffraction analyses revealed that compounds 1 and 2 possess a lamellar anionic [Sn3 Se7 ]n (2n-) structure comprising distinct eight-membered ring units, whereas 3 features a MAC-decorated anionic [Ni(tepa)Sn12 Se28 ]n (6n-) layered structure. In contrast to 1-3, compound 4 exhibits a 3D open framework of anionic [Sn4 Se9 ]n (2n-) . The structural variation from 1 to 4 clearly indicates that on the basis of the synergistic structure-directing ability of the MACs and ILs, variation of the organic polyamine ligand has a significant impact on the formation of selenidostannates. PMID:27037731

  11. 3D Surgical Simulation

    PubMed Central

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  12. Background and pickup ion velocity distribution dynamics in Titan's plasma environment: 3D hybrid simulation and comparison with CAPS T9 observations

    NASA Astrophysics Data System (ADS)

    Lipatov, A. S.; Sittler, E. C.; Hartle, R. E.; Cooper, J. F.; Simpson, D. G.

    2011-09-01

    In this report we discuss the ion velocity distribution dynamics from the 3D hybrid simulation. In our model the background, pickup, and ionospheric ions are considered as a particles, whereas the electrons are described as a fluid. Inhomogeneous photoionization, electron-impact ionization and charge exchange are included in our model. We also take into account the collisions between the ions and neutrals. The current simulation shows that mass loading by pickup ions H,H2+, CH4+ and N2+ is stronger than in the previous simulations when O + ions are introduced into the background plasma. In our hybrid simulations we use Chamberlain profiles for the atmospheric components. We also include a simple ionosphere model with average mass M = 28 amu ions that were generated inside the ionosphere. The moon is considered as a weakly conducting body. Special attention will be paid to comparing the simulated pickup ion velocity distribution with CAPS T9 observations. Our simulation shows an asymmetry of the ion density distribution and the magnetic field, including the formation of the Alfvén wing-like structures. The simulation also shows that the ring-like velocity distribution for pickup ions relaxes to a Maxwellian core and a shell-like halo.

  13. Background and Pickup Ion Velocity Distribution Dynamics in Titan's Plasma Environment: 3D Hybrid Simulation and Comparison with CAPS T9 Observations

    NASA Technical Reports Server (NTRS)

    Lipatov, A. S.; Sittler, E. C., Jr.; Hartle, R. E.; Cooper, J. F.; Simpson, D. G.

    2011-01-01

    In this report we discuss the ion velocity distribution dynamics from the 3D hybrid simulation. In our model the background, pickup, and ionospheric ions are considered as a particles, whereas the electrons are described as a fluid. Inhomogeneous photoionization, electron-impact ionization and charge exchange are included in our model. We also take into account the collisions between the ions and neutrals. The current simulation shows that mass loading by pickup ions H(+); H2(+), CH4(+) and N2(+) is stronger than in the previous simulations when O+ ions are introduced into the background plasma. In our hybrid simulations we use Chamberlain profiles for the atmospheric components. We also include a simple ionosphere model with average mass M = 28 amu ions that were generated inside the ionosphere. The moon is considered as a weakly conducting body. Special attention will be paid to comparing the simulated pickup ion velocity distribution with CAPS T9 observations. Our simulation shows an asymmetry of the ion density distribution and the magnetic field, including the formation of the Alfve n wing-like structures. The simulation also shows that the ring-like velocity distribution for pickup ions relaxes to a Maxwellian core and a shell-like halo.

  14. Effect of cold plasma pre-treatment on photocatalytic activity of 3D fabric loaded with nano-photocatalysts: Response surface methodology

    NASA Astrophysics Data System (ADS)

    Ghoreishian, Seyed Majid; Badii, Khashayar; Norouzi, Mohammad; Malek, Kaveh

    2016-03-01

    In this study, the physico-chemical effects occasioned by the cold plasma discharge (CPD) on the photo-decolorization of Reactive Orange 16 (RO16) by 3D fabrics (spacer fabrics) loaded with ZnO:TiO2 nano-photocatalysts (nphs) were optimized via response surface methodology (RSM). CPD was employed to improve the surface characteristics of the spacer fabrics for nphs loading. Surface morphology and color variation were studied utilizing scanning electron microscopy (SEM) and CIE-Lab system, respectively. The effect of CPD on the wetting ability of the spacer fabrics was examined using dynamic adsorption measurement (DAM). Also, X-ray fluorescence (XRF) was utilized to investigate the durability of the nphs on the spacer fabrics. All the experiments were implemented in a Box-Behnken design (BBD) with three independent variables (CPD treatment time, dye concentration and irradiation time) in order to optimize the decolorization of RO16. The anticipated values of the decolorization efficiency were found to be in excellent agreement with the experimental values (R2 = 0.9996, Adjusted R2 = 0.9992). The kinetic analysis demonstrated that the photocatalytic decolorization followed the Langmuir-Hinshelwood kinetic model. In conclusion, this heterogeneous photocatalytic process is capable of decolorizing and mineralizing azoic reactive dye in textile wastewater. Moreover, the results confirmed that RSM based on the BBD was a suitable method to optimize the operating conditions of RO16 degradation.

  15. Fluid Complex Plasmas - Studies at the Particle Level

    SciTech Connect

    Ivlev, A. V.; Morfill, G. E.; Nosenko, V.; Pompl, R.; Rubin-Zuzic, M.; Thomas, H. M.

    2008-02-21

    Complex plasmas are ideal laboratory systems to investigate kinetics of strongly coupled many-particle ensembles. In contrast to colloidal suspensions, the particle dynamics in complex plasmas is virtually undamped. This makes complex plasmas particularly suited to study kinetics of fluids, by observing fully resolved motion of individual particles. In this paper we focus on three major experimental highlights characterizing kinetics of fluid plasmas--laminar shear flows, onset and development of hydrodynamic instabilities, and heterogeneous nucleation in supercooled fluids. Analysis of elementary processes observed in these experiments provides important insights into fundamental generic processes governing fluid behavior, demonstrating significant interdisciplinary potential of the complex plasma research.

  16. Double layer formation at the interface of complex plasmas

    SciTech Connect

    Yaroshenko, V. V.; Thoma, M. H.; Thomas, H. M.; Morfill, G. E.

    2008-08-15

    Necessary conditions are formulated for the generation of a double layer at the interface of a complex plasma and a particle-free electron-ion plasma in a weakly collisional discharge. Examples are calculated for realistic observed complex plasmas, and it is shown that situations of both ''smooth'' transitions and 'sharp' transitions can exist. The model can explain the abrupt boundaries observed.

  17. Postpartum translabial 2D and 3D ultrasound measurements of the anal sphincter complex in primiparous women delivering by vaginal birth versus Cesarean delivery

    PubMed Central

    Hall, Rebecca J.; Leeman, Lawrence M.; Migliaccio, Laura; Qualls, Clifford; Rogers, Rebecca G.

    2015-01-01

    Introduction and hypothesis Consensus on normal translabial ultrasound (TL-US) anal sphincter complex measurements for postpartum women is lacking. We aimed to evaluate normative measurements in 2D and 3D TL-US for the anal sphincter complex (ASC) at 6 months postpartum and compare these measurements in women who had a vaginal birth (VB) and in those who had a Cesarean delivery (CD). Methods A large, prospective cohort of primiparous women underwent 2D and 3D TL-US 6 months after their first delivery. For normative sphincter measurements, we excluded women with third- or fourth-degree lacerations or with sphincter interruption on TL-US. Measurements included the sphincter thickness at the 3, 6, 9, and 12 o'clock positions of the external anal sphincter (EAS) and the internal anal sphincter (IAS) at proximal, mid, and distal levels. We also measured the mean coronal diameter of the pubovisceralis muscle (PVM). Results 696 women consented to participate, and 433 women presented for ultrasound imaging 6 months later. Women who sustained a third- or fourth-degree laceration had significantly thicker EAS measurements at 12 o'clock. Sphincter asymmetry was common (69 %), but was not related to mode of delivery. Only IAS measurements at the proximal and distal 12 o'clock position were significantly thicker for CD patients. There were no significant differences in the EAS or PVM measurements between VB and CD women. Conclusions There appear to be few differences in normative sphincter ultrasound measurements between primiparous patients who had VB or CD. PMID:24105408

  18. Kinetic theory of partially ionized complex (dusty) plasmas

    SciTech Connect

    Tsytovich, V.N.; De Angelis, U.; Ivlev, A.V.; Morfill, G.E.

    2005-08-15

    The general approach to the kinetic theory of complex (dusty) plasmas [Tsytovich and de Angelis, Phys. Plasmas 6, 1093 (1999)], which was formulated with the assumption of a regular (nonfluctuating) source of plasma particles, is reformulated to include ionization by electron impact on neutrals as the plasma source and the effects of collisions of ions and dust particles with neutrals.

  19. Bioprinting of 3D hydrogels.

    PubMed

    Stanton, M M; Samitier, J; Sánchez, S

    2015-08-01

    Three-dimensional (3D) bioprinting has recently emerged as an extension of 3D material printing, by using biocompatible or cellular components to build structures in an additive, layer-by-layer methodology for encapsulation and culture of cells. These 3D systems allow for cell culture in a suspension for formation of highly organized tissue or controlled spatial orientation of cell environments. The in vitro 3D cellular environments simulate the complexity of an in vivo environment and natural extracellular matrices (ECM). This paper will focus on bioprinting utilizing hydrogels as 3D scaffolds. Hydrogels are advantageous for cell culture as they are highly permeable to cell culture media, nutrients, and waste products generated during metabolic cell processes. They have the ability to be fabricated in customized shapes with various material properties with dimensions at the micron scale. 3D hydrogels are a reliable method for biocompatible 3D printing and have applications in tissue engineering, drug screening, and organ on a chip models. PMID:26066320

  20. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITH TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  1. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITHOUT TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  2. 3d-3d correspondence revisited

    NASA Astrophysics Data System (ADS)

    Chung, Hee-Joong; Dimofte, Tudor; Gukov, Sergei; Sułkowski, Piotr

    2016-04-01

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d {N}=2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. We also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  3. Wall-touching kink mode calculations with the M3D code

    SciTech Connect

    Breslau, J. A. Bhattacharjee, A.

    2015-06-15

    This paper seeks to address a controversy regarding the applicability of the 3D nonlinear extended MHD code M3D [W. Park et al., Phys. Plasmas 6, 1796 (1999)] and similar codes to calculations of the electromagnetic interaction of a disrupting tokamak plasma with the surrounding vessel structures. M3D is applied to a simple test problem involving an external kink mode in an ideal cylindrical plasma, used also by the Disruption Simulation Code (DSC) as a model case for illustrating the nature of transient vessel currents during a major disruption. While comparison of the results with those of the DSC is complicated by effects arising from the higher dimensionality and complexity of M3D, we verify that M3D is capable of reproducing both the correct saturation behavior of the free boundary kink and the “Hiro” currents arising when the kink interacts with a conducting tile surface interior to the ideal wall.

  4. Wall-touching kink mode calculations with the M3D code

    NASA Astrophysics Data System (ADS)

    Breslau, J. A.; Bhattacharjee, A.

    2015-06-01

    This paper seeks to address a controversy regarding the applicability of the 3D nonlinear extended MHD code M3D [W. Park et al., Phys. Plasmas 6, 1796 (1999)] and similar codes to calculations of the electromagnetic interaction of a disrupting tokamak plasma with the surrounding vessel structures. M3D is applied to a simple test problem involving an external kink mode in an ideal cylindrical plasma, used also by the Disruption Simulation Code (DSC) as a model case for illustrating the nature of transient vessel currents during a major disruption. While comparison of the results with those of the DSC is complicated by effects arising from the higher dimensionality and complexity of M3D, we verify that M3D is capable of reproducing both the correct saturation behavior of the free boundary kink and the "Hiro" currents arising when the kink interacts with a conducting tile surface interior to the ideal wall.

  5. Arena3D: visualization of biological networks in 3D

    PubMed Central

    Pavlopoulos, Georgios A; O'Donoghue, Seán I; Satagopam, Venkata P; Soldatos, Theodoros G; Pafilis, Evangelos; Schneider, Reinhard

    2008-01-01

    Background Complexity is a key problem when visualizing biological networks; as the number of entities increases, most graphical views become incomprehensible. Our goal is to enable many thousands of entities to be visualized meaningfully and with high performance. Results We present a new visualization tool, Arena3D, which introduces a new concept of staggered layers in 3D space. Related data – such as proteins, chemicals, or pathways – can be grouped onto separate layers and arranged via layout algorithms, such as Fruchterman-Reingold, distance geometry, and a novel hierarchical layout. Data on a layer can be clustered via k-means, affinity propagation, Markov clustering, neighbor joining, tree clustering, or UPGMA ('unweighted pair-group method with arithmetic mean'). A simple input format defines the name and URL for each node, and defines connections or similarity scores between pairs of nodes. The use of Arena3D is illustrated with datasets related to Huntington's disease. Conclusion Arena3D is a user friendly visualization tool that is able to visualize biological or any other network in 3D space. It is free for academic use and runs on any platform. It can be downloaded or lunched directly from . Java3D library and Java 1.5 need to be pre-installed for the software to run. PMID:19040715

  6. Constraints on the Lost City Hydrothermal System from borehole thermal data; 3-D models of heat flow and hydrothermal circulation in an oceanic core complex.

    NASA Astrophysics Data System (ADS)

    Titarenko, S.; McCaig, A. M.

    2014-12-01

    A perennial problem in near-ridge hydrothermal circulation is that the only directly measurable data to test models is often vent fluid temperature. Surface heat flow measurements may be available but without the underlying thermal structure it is not known if they are transient and affected by local hydrothermal flow, or conductive. The Atlantis Massif oceanic core complex at 30 °N on the mid-Atlantic Ridge, offers a unique opportunity to better constrain hydrothermal circulation models. The temperature profile in gabbroic rocks of IODP Hole 1309D was measured in IODPExpedition 340T, and found to be near-conductive, but with a slight inflexion at ~750 mbsf indicating downward advection of fluid above that level. The lack of deep convection is especially remarkable given that the long-lived Lost City Hydrothermal Field (LCHF) is located only 5km to the south. We have modelled hydrothermal circulation in the Massif using Comsol Multiphysics, comparing 2-D and 3-D topographic models and using temperature-dependent conductivity to give the best estimate of heatflow into the Massif. We can constrain maximum permeability in gabbro below 750 mbsf to 5e-17 m2. The thermal gradient in the upper part of the borehole can be matched with a permeability of 3e-14 m2 in a 750 m thick layer parallel to the surface of the massif, with upflow occurring in areas of high topography and downflow at the location of the borehole. However in 3-D the precise flow pattern is quite model dependent, and the thermal structure can be matched either by downflow centred on the borehole at lower permeability or centred a few hundred metres from the borehole at higher permeability. The borehole gradient is compatible with the longevity (>120 kyr) and outflow temperature (40-90 °C) of the LCHF either with a deep more permeable (1e-14 m2 to 1e-15 m2) domain beneath the vent site in 2-D or a permeable fault slot 500 to 1000m wide and parallel to the transform fault in 3-D. In both cases topography

  7. Mechanochemical and thermal formation of 1H-benzotriazole coordination polymers and complexes of 3d-transition metals with intriguing dielectric properties.

    PubMed

    Brede, Franziska A; Mühlbach, Friedrich; Sextl, Gerhard; Müller-Buschbaum, Klaus

    2016-07-14

    Liquid-assisted grinding (LAG) reactions have been successfully applied to achieve a series of complexes and coordination polymers based on divalent 3d-transition metal chlorides (TM chlorides) and the aromatic ligand 1H-benzotriazole (BtzH). The obtained substances were investigated via single crystal X-ray, powder X-ray determination and simultaneous DTA/TG analysis as model compounds for structural and chemical influences on their dielectric properties. Depending on the synthesis method, different constitutions and structures are observed. Two polymorphous forms of the 1D polymer [MnCl2(BtzH)2] (1 and 2) as well as the complexes [ZnCl2(BtzH)2]·BtzH (3) and [CoCl2(BtzH)2]·BtzH (4) have been obtained as phase-pure bulk substances via the mechanochemical LAG route, and even single crystals are available. For comparison, thermal reactions were also carried out and have led to the formation of the neutral complexes: [CoCl2(BtzH)2] (5) and [CoCl2(BtzH)4]·4BtzH (6), [ZnCl2(BtzH)2] (7) and the anionic complex BtzH2[CoCl3BtzH] (8). In addition, thermal treatment of 3 yields the benzotriazolium salt {(BtzH)2H}Cl (9). The transition metal compounds were additionally analysed regarding their dielectric properties by frequency-dependent as well as temperature-dependent permittivity investigations. It is intriguing that compounds 1 and 3 show remarkably low dielectric constants and loss factors up to 50 °C highlighting them as potential "low-k materials". PMID:27265300

  8. 1D to 3D and Chiral to Noncentrosymmetric Metal-Organic Complexes Controlled by the Amount of DEF Solvent: Photoluminescent and NLO Properties.

    PubMed

    Wen, Yuehong; Sheng, Tianlu; Zhuo, Chao; Zhu, Xiaoquan; Hu, Shengmin; Cao, Wenhai; Li, Haoran; Zhang, Hao; Wu, Xintao

    2016-05-01

    A mixture of 2D and 1D metal-organic complexes, [ZnL(H2O)2·G1·DEF·2H2O]n (1a: G1 = naphthalene-2,7-disulfonate; DEF = N,N-diethylformamide) and [ZnL(H2O)3·G1·DEF·2H2O]n (2), has been prepared from a hydrogenated Schiff base L and Zn(II) in a DEF-contained solvent system under mild conditions. The yields of 1a and 2 are equivalent; however, they can be tuned by varying the amount of DEF solvent. Increasing the use of DEF tends to form pure 1a, while decreasing it generates 2. Without DEF, another novel 3D four-connected CdSO4 (cds) framework [ZnL(H2O)2·G1·2H2O]n (3) composed of alternated right-handed and left-handed helical chains has been constructed. The amount of DEF solvent has a significant impact on the diverse coordination architectures of 1-3, which is rare in the preparation of metal-organic complexes. The photoluminescence of complexes 1-3 along with naphthalene-2,7-disulfonate has been investigated in the solid state. The luminescent emission of G1 was enhanced greatly after being confined into metal-organic networks. In addition, complexes 1-3 display second-harmonic generation efficiencies, which are approximately 0.58, 0.42, 0.32, and 0.52 times as much as that of potassium dihydrogen phosphate. PMID:27093469

  9. 3D and Education

    NASA Astrophysics Data System (ADS)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  10. Combining Amine-Reactive Cross-Linkers and Photo-Reactive Amino Acids for 3D-Structure Analysis of Proteins and Protein Complexes.

    PubMed

    Lössl, Philip; Sinz, Andrea

    2016-01-01

    During the last 15 years, the combination of chemical cross-linking and high-resolution mass spectrometry (MS) has matured into an alternative approach for analyzing 3D-structures of proteins and protein complexes. Using the distance constraints imposed by the cross-links, models of the protein or protein complex under investigation can be created. The majority of cross-linking studies are currently conducted with homobifunctional amine-reactive cross-linkers. We extend this "traditional" cross-linking/MS strategy by adding complementary photo-cross-linking data. For this, the diazirine-containing unnatural amino acids photo-leucine and photo-methionine are incorporated into the proteins and cross-link formation is induced by UV-A irradiation. The advantage of the photo-cross-linking strategy is that it is not restricted to lysine residues and that hydrophobic regions in proteins can be targeted, which is advantageous for investigating membrane proteins. We consider the strategy of combining cross-linkers with orthogonal reactivities and distances to be ideally suited for maximizing the amount of structural information that can be gained from a cross-linking experiment. PMID:26700045

  11. Crystal Structure of Pim1 Kinase in Complex with a Pyrido[4,3-D]Pyrimidine Derivative Suggests a Unique Binding Mode

    PubMed Central

    Cho, Jea-Won; Choi, Jang-Sik; Lee, Jaekyoo; Song, Ho-Juhn; Koh, Jong Sung; Lee, Byung Il

    2013-01-01

    Human Pim1 kinase is a serine/threonine protein kinase that plays important biological roles in cell survival, apoptosis, proliferation, and differentiation. Moreover, Pim1 is up-regulated in various hematopoietic malignancies and solid tumors. Thus, Pim1 is an attractive target for cancer therapeutics, and there has been growing interest in developing small molecule inhibitors for Pim1. Here, we describe the crystal structure of Pim1 in complex with a newly developed pyrido[4,3-d]pyrimidine-derivative inhibitor (SKI-O-068). Our inhibitor exhibits a half maximum inhibitory concentration (IC50) of 123 (±14) nM and has an unusual binding mode in complex with Pim1 kinase. The interactions between SKI-O-068 and the Pim1 active site pocket residue are different from those of other scaffold inhibitor-bound structures. The binding mode analysis suggests that the SKI-O-068 inhibitor can be improved by introducing functional groups that facilitate direct interaction with Lys67, which aid in the design of an optimized inhibitor. PMID:23936194

  12. Late Cretaceous Localized Crustal Thickening as a Primary Control on the 3-D Architecture and Exhumation Histories of Cordilleran Metamorphic Core Complexes

    NASA Astrophysics Data System (ADS)

    Gans, P. B.; Wong, M.

    2014-12-01

    The juxtaposition of mylonitic mid-crustal rocks and faulted supracrustal rocks in metamorphic core complexes (MMCs) is usually portrayed in 2 dimensions and attributed to a single event of large-scale slip ± isostatic doming along a low-angle "detachment fault"/ shear zone. This paradigm does not explain dramatic along strike (3-D) variations in slip magnitude, footwall architecture, and burial / exhumation histories of most MMCs. A fundamental question posed by MMCs is how did their earlier thickening and exhumation histories influence the geometric evolution and 3-D slip distribution on the subsequent detachment faults? New geologic mapping and 40Ar/39Ar thermochronology from the Snake Range-Kern Mts-Deep Creek Mts (SKDC) complex in eastern Nevada offer important insights into this question. Crustal shortening and thickening by large-scale non-cylindrical recumbent folds and associated thrust faults during the late Cretaceous (90-80 Ma) resulted in deep burial (650°C, 20-25 km) of the central part of the footwall, but metamorphic grade decreases dramatically to the N and S in concert with decreasing amplitude on the shortening structures. Subsequent Paleogene extensional exhumation by normal faulting and ESE-directed mylonitic shearing is greatest in areas of maximum earlier thickening and brought highest grade rocks back to depths of~10-12 km. After ≥15 Ma of quiescence, rapid E-directed slip initiated along the brittle Miocene Snake Range detachment at 20 Ma and reactivated the Eocene shear zone. The ≥200°C gradient across the footwall at this time implies that the Miocene slip surface originated as a moderately E-dipping normal fault. This Miocene slip surface can be tracked for more than 100 km along strike, but the greatest amount of Miocene slip also coincides with parts of the footwall that were most deeply buried in the Cretaceous. These relations indicate that not only is the SKDC MMC a composite feature, but that the crustal welt created by

  13. Multi-scale Characterization of the Energy Landscape of Proteins with Application to the C3d/Efb-C Complex

    PubMed Central

    Haspel, Nurit; Geisbrecht, Brian V.; Lambris, John; Kavraki, Lydia

    2009-01-01

    We present a novel multi-level methodology to explore and characterize the low energy landscape and the thermodynamics of proteins. Traditional conformational search methods typically explore only a small portion of the conformational space of proteins and are hard to apply to large proteins due to the large amount of calculations required. In our multi-scale approach, we first provide an initial characterization of the equilibrium state ensemble of a protein using an efficient computational conformational sampling method. We then enrich the obtained ensemble by performing short Molecular Dynamics (MD) simulations on selected conformations from the ensembles as starting points. To facilitate the analysis of the results we project the resulting conformations on a low-dimensional landscape to efficiently focus on important interactions and examine low energy regions. This methodology provides a more extensive sampling of the low energy landscape than an MD simulation starting from a single crystal structure as it explores multiple trajectories of the protein. This enables us to obtain a broader view of the dynamics of proteins and it can help in understanding complex binding, improving docking results and more. In this work we apply the methodology to provide an extensive characterization of the bound complexes of the C3d fragment of human Complement component C3 and one of its powerful bacterial inhibitors, the inhibitory domain of Staphylococcus aureus extra-cellular fibrinogen-binding domain (Efb-C) and two of its mutants. We characterize several important interactions along the binding interface and define low free energy regions in the three complexes. PMID:19899169

  14. Crystal transformation synthesis of a highly stable fluorescent 3D indium-tetranuclear {In4(μ2-OH)3} building block based metal organic framework through a dinuclear complex.

    PubMed

    Wang, Xin-Ming; Fan, Rui-Qing; Qiang, Liang-Sheng; Wang, Ping; Yang, Yu-Lin; Wang, Yu-Lei

    2014-11-21

    A rare 3D tetranuclear {In4(μ2-OH)3} building block based MOF {[In4/3(μ2-OH)(2,6-pydc)(1,4-bda)0.5(H2O)]·2H2O}n (2) was obtained through a crystal transformation from a dimeric complex In3(2,6-pydc)3(1,4-bda)1.5(H2O)6 (1). With a 2D + 3D3D compact structure, 2 retains crystallinity in boiling water and organic solvents, exhibiting exceptional fluorescence quenching behaviour for the DMSO molecule. PMID:25135576

  15. Stereoscopic Investigations of 3D Coulomb Balls

    SciTech Connect

    Kaeding, Sebastian; Melzer, Andre; Arp, Oliver; Block, Dietmar; Piel, Alexander

    2005-10-31

    In dusty plasmas particles are arranged due to the influence of external forces and the Coulomb interaction. Recently Arp et al. were able to generate 3D spherical dust clouds, so-called Coulomb balls. Here, we present measurements that reveal the full 3D particle trajectories from stereoscopic imaging.

  16. 3D Imaging.

    ERIC Educational Resources Information Center

    Hastings, S. K.

    2002-01-01

    Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)

  17. A novel BLyS antagonist peptide designed based on the 3-D complex structure of BCMA and BLyS

    SciTech Connect

    Sun Jian . E-mail: jsun@public3.bta.net.cn; Feng Jiannan; Li Yan; Shen Beifen

    2006-08-11

    B lymphocyte stimulator (BLyS) is a member of tumor necrosis factor (TNF) family. Because of its roles in autoimmune diseases such as systemic lupus erythematosus (SLE), rheumatoid arthritis (RA), and Sjogren syndrome (SS), BLyS antagonists have been tested to treat SLE- and RA-like symptoms in mice and obtained optimistic results. So far, reported BLyS antagonists were mostly decoyed BLyS receptors or anti-BLyS antibodies. In this study, a novel BLyS antagonist peptide, PT, was designed based on the modeling 3-D complex structure of BCMA and BLyS. The interaction mode of PT with BLyS was analyzed theoretically. The results of competitive ELISA demonstrated that PT could inhibit the binding of BCMA-Fc and anti-BLyS antibody to BLyS in vitro. In addition, PT could partly block the proliferating activity of BLyS on mice splenocytes. The BLyS antagonizing activity of PT was significant (p < 0.05). This study highlights the possibility of using BLyS antagonist peptide to neutralize BLyS activity. Further optimization of PT with computer-guided molecular design method to enhance its biopotency may be useful in developing new BLyS antagonists to treat BLyS-related autoimmune diseases.

  18. Determination of porosity and facies trends in a complex carbonate reservoir, by using 3-D seismic, borehole tools, and outcrop geology

    SciTech Connect

    Zacharakis, T.G. Jr.; Comet, J.N.; Murillo, A.A.

    1996-08-01

    Mesozoic carbonate reservoirs are found in the Mediterranean Sea, off the east coast of Spain. A wide variation of porosities are found in the core samples and logs: vuggy, breccia, fractures, and cavern porosity. In addition, complex Tertiary carbonate geometries include olistostromes, breccia bodies, and reef buildups, which are found on top of Mesozoic carbonates. Predicting the porosity trends within these oil productive reservoirs requires an understanding of how primary porosity was further enhanced by secondary processes, including fractures, karstification, and dolomitization in burial conditions. Through an extensive investigation of field histories, outcrop geology, and seismic data, a series of basic reservoir styles have been identified and characterized by well log signature and seismic response. The distribution pattern of the different reservoirs styles is highly heterogeneous, but by integrating subsurface data and outcrop analogs, it is possible to distinguish field-scale and local patterns of both vertical and local variations in reservoir properties. Finally, it is important to quantify these reservoir properties through the study of seismic attributes, such as amplitude variations, and log responses at the reservoir interval. By incorporating 3-D seismic data, through the use of seismic inversion, it is possible to predict porosity trends. Further, the use of geostatistics can lead to the prediction of reservoir development within the carbonate facies.

  19. Electromagnetic coupling and array packing induce exchange of dominance on complex modes in 3D periodic arrays of spheres with large permittivity

    DOE PAGESBeta

    Campione, Salvatore; Capolino, Filippo

    2016-01-25

    In this study, we investigate the effect on wave propagation of array packing and electromagnetic coupling between spheres in a three-dimensional (3D) lattice of microspheres with large permittivity that exhibit strong magnetic polarizability. We report on the complex wavenumber of Bloch waves in the lattice when each sphere is assumed to possess both electric and magnetic dipoles and full electromagnetic coupling is accounted for. While for small material-filling fractions we always determine one dominant mode with low attenuation constant, the same does not happen for large filling fractions, when electromagnetic coupling is included. In the latter case we peculiarly observemore » two dominant modes with low attenuation constant, dominant in different frequency ranges. The filling fraction threshold for which two dominant modes appear varies for different metamaterial constituents, as proven by considering spheres made by either titanium dioxide or lead telluride. As further confirmation of our findings, we retrieve the complex propagation constant of the dominant mode(s) via a field fitting procedure employing two sets of waves (direct and reflected) pertaining to two distinct modes, strengthening the presence of the two distinct dominant modes for increasing filling fractions. However, given that one mode only, with transverse polarization, at any given frequency, is dominant and able to propagate inside the lattice, we are able to accurately treat the metamaterial that is known to exhibit artificial magnetism as a homogeneous material with effective parameters, such as the refractive index. Results clearly show that the account of both electric and magnetic scattering processes in evaluating all electromagnetic intersphere couplings is essential for a proper description of the electromagnetic propagation in lattices.« less

  20. Development of a 3D Coupled Physical-Biogeochemical Model for the Marseille Coastal Area (NW Mediterranean Sea): What Complexity Is Required in the Coastal Zone?

    PubMed Central

    Fraysse, Marion; Pinazo, Christel; Faure, Vincent Martin; Fuchs, Rosalie; Lazzari, Paolo; Raimbault, Patrick; Pairaud, Ivane

    2013-01-01

    Terrestrial inputs (natural and anthropogenic) from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C) and nitrogen (N) cycles and a second model that also considers the phosphorus (P) cycle. Realistic simulations were performed for a period of 5 years (2007–2011). The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model. PMID:24324589

  1. Critical point and sound waves in complex plasmas

    SciTech Connect

    Avinash, K.; Khrapak, S. A.; Morfill, G. E.

    2009-07-15

    An equation of state for particles in complex plasmas, which includes contributions from plasma background fields and interparticle interactions (electric repulsion and 'ion shadow' attraction), is obtained. Using this equation, experimental parameter regimes for the observation of liquid-vapor transitions and a critical point are examined. In addition, it is demonstrated that as in binary fluids, sound waves in complex plasmas do not exhibit critical behavior. Thus, criticality in complex plasmas may have more in common with binary fluids rather than ordinary fluids.

  2. 3D seismic geomorphology of mass transport complexes in a foredeep basin: Examples from the Pleistocene of the Central Adriatic Basin (Mediterranean Sea)

    NASA Astrophysics Data System (ADS)

    Dalla Valle, Giacomo; Gamberi, Fabiano; Rocchini, Patrizia; Minisini, Daniel; Errera, Alessia; Baglioni, Luca; Trincardi, Fabio

    2013-08-01

    Three-dimensional (3D) seismic-reflection data has shed light on the character of a series of mass transport complexes (MTCs) emplaced during the Pleistocene in the Pescara Basin (Central Adriatic Sea, Italy). The Pescara Basin is the Plio-Pleistocene inner foredeep of the Central Apennines orogen, which was filled by a rapidly prograding, margin-scale clinoforms system. Three MTCs punctuate the normal turbiditic and hemipelagic sedimentary succession of the Pescara Basin foredeep. MTC_0 is the oldest one and covers an area of around 74 km2. It is composed of three different mass transport deposits (MTDs) resulting from individual collapses that involved a shelf-edge delta during a period of relative sea level rise. MTC_1, the intermediate age MTC, is the largest one, with an area of 90 km2. It has a 10 km wide cookie-bite headwall region that indents the upper slope and, in places, reaches the continental shelf-break. MTC_1 is made up of four laterally and vertically stacked MTDs which are the result of a composite set of failures that migrated progressively upslope in a sedimentary setting dominated by contourite deposits. MTC_2 is the youngest and the smallest one, with an area of 55 km2. It has a 5 km long headwall confined in correspondence with a sedimentary bulge developed in the upper slope. Its geomorphic setting leads us to consider two different episodes of failure rooted at different depths. The investigation of the MTCs, through the coupling of 3D seismic geomorphology, seismic facies analysis and rollover trajectory analysis, reveals that the type of sedimentary environment, the rate of sediment accumulation, the source region and the depth of rooting of the failure, are the major controlling factors on MTC evolution and emplacement. Each MTC of the Pescara Basin foredeep is generally confined within a discrete clinotheme. Finally, the rollover trajectory analysis has shown that, in the PB foredeep, a sediment failure can possibly occur at any

  3. The Esri 3D city information model

    NASA Astrophysics Data System (ADS)

    Reitz, T.; Schubiger-Banz, S.

    2014-02-01

    With residential and commercial space becoming increasingly scarce, cities are going vertical. Managing the urban environments in 3D is an increasingly important and complex undertaking. To help solving this problem, Esri has released the ArcGIS for 3D Cities solution. The ArcGIS for 3D Cities solution provides the information model, tools and apps for creating, analyzing and maintaining a 3D city using the ArcGIS platform. This paper presents an overview of the 3D City Information Model and some sample use cases.

  4. Computer tomography of large dust clouds in complex plasmas

    SciTech Connect

    Killer, Carsten; Himpel, Michael; Melzer, André

    2014-10-15

    The dust density is a central parameter of a dusty plasma. Here, a tomography setup for the determination of the three-dimensionally resolved density distribution of spatially extended dust clouds is presented. The dust clouds consist of micron-sized particles confined in a radio frequency argon plasma, where they fill almost the entire discharge volume. First, a line-of-sight integrated dust density is obtained from extinction measurements, where the incident light from an LED panel is scattered and absorbed by the dust. Performing these extinction measurements from many different angles allows the reconstruction of the 3D dust density distribution, analogous to a computer tomography in medical applications.

  5. Complex Plasmas in Narrow Channels: Impact of Confinement on the Local Order

    SciTech Connect

    Klumov, B. A.

    2008-10-15

    Two-dimensional (2D) and three-dimensional (3D) quasi-equilibrium configurations of a complex (dusty) plasma in narrow channels are investigated using the molecular dynamics simulations for various confining potentials (confinements). The dynamics of the microparticles is described within the framework of a Langevin thermostat with allowance for the pair interaction between charged particles, which is described by a screened Coulomb potential (Yukawa potential). Two types of confinement: the parabolic electrostatic potential and hard elastic wall are considered. It is shown that the confinement strongly affects the crystallization and the local order of the microparticles in the system under consideration; in particular, the appearance of a new quasicrystalline phase induced by the hard wall confinement is revealed in 3D case.

  6. TRACE 3-D documentation

    SciTech Connect

    Crandall, K.R.

    1987-08-01

    TRACE 3-D is an interactive beam-dynamics program that calculates the envelopes of a bunched beam, including linear space-charge forces, through a user-defined transport system. TRACE 3-D provides an immediate graphics display of the envelopes and the phase-space ellipses and allows nine types of beam-matching options. This report describes the beam-dynamics calculations and gives detailed instruction for using the code. Several examples are described in detail.

  7. From 3D view to 3D print

    NASA Astrophysics Data System (ADS)

    Dima, M.; Farisato, G.; Bergomi, M.; Viotto, V.; Magrin, D.; Greggio, D.; Farinato, J.; Marafatto, L.; Ragazzoni, R.; Piazza, D.

    2014-08-01

    In the last few years 3D printing is getting more and more popular and used in many fields going from manufacturing to industrial design, architecture, medical support and aerospace. 3D printing is an evolution of bi-dimensional printing, which allows to obtain a solid object from a 3D model, realized with a 3D modelling software. The final product is obtained using an additive process, in which successive layers of material are laid down one over the other. A 3D printer allows to realize, in a simple way, very complex shapes, which would be quite difficult to be produced with dedicated conventional facilities. Thanks to the fact that the 3D printing is obtained superposing one layer to the others, it doesn't need any particular work flow and it is sufficient to simply draw the model and send it to print. Many different kinds of 3D printers exist based on the technology and material used for layer deposition. A common material used by the toner is ABS plastics, which is a light and rigid thermoplastic polymer, whose peculiar mechanical properties make it diffusely used in several fields, like pipes production and cars interiors manufacturing. I used this technology to create a 1:1 scale model of the telescope which is the hardware core of the space small mission CHEOPS (CHaracterising ExOPlanets Satellite) by ESA, which aims to characterize EXOplanets via transits observations. The telescope has a Ritchey-Chrétien configuration with a 30cm aperture and the launch is foreseen in 2017. In this paper, I present the different phases for the realization of such a model, focusing onto pros and cons of this kind of technology. For example, because of the finite printable volume (10×10×12 inches in the x, y and z directions respectively), it has been necessary to split the largest parts of the instrument in smaller components to be then reassembled and post-processed. A further issue is the resolution of the printed material, which is expressed in terms of layers

  8. GRID2D/3D: A computer program for generating grid systems in complex-shaped two- and three-dimensional spatial domains. Part 2: User's manual and program listing

    NASA Technical Reports Server (NTRS)

    Bailey, R. T.; Shih, T. I.-P.; Nguyen, H. L.; Roelke, R. J.

    1990-01-01

    An efficient computer program, called GRID2D/3D, was developed to generate single and composite grid systems within geometrically complex two- and three-dimensional (2- and 3-D) spatial domains that can deform with time. GRID2D/3D generates single grid systems by using algebraic grid generation methods based on transfinite interpolation in which the distribution of grid points within the spatial domain is controlled by stretching functions. All single grid systems generated by GRID2D/3D can have grid lines that are continuous and differentiable everywhere up to the second-order. Also, grid lines can intersect boundaries of the spatial domain orthogonally. GRID2D/3D generates composite grid systems by patching together two or more single grid systems. The patching can be discontinuous or continuous. For continuous composite grid systems, the grid lines are continuous and differentiable everywhere up to the second-order except at interfaces where different single grid systems meet. At interfaces where different single grid systems meet, the grid lines are only differentiable up to the first-order. For 2-D spatial domains, the boundary curves are described by using either cubic or tension spline interpolation. For 3-D spatial domains, the boundary surfaces are described by using either linear Coon's interpolation, bi-hyperbolic spline interpolation, or a new technique referred to as 3-D bi-directional Hermite interpolation. Since grid systems generated by algebraic methods can have grid lines that overlap one another, GRID2D/3D contains a graphics package for evaluating the grid systems generated. With the graphics package, the user can generate grid systems in an interactive manner with the grid generation part of GRID2D/3D. GRID2D/3D is written in FORTRAN 77 and can be run on any IBM PC, XT, or AT compatible computer. In order to use GRID2D/3D on workstations or mainframe computers, some minor modifications must be made in the graphics part of the program; no

  9. Effective Interaction Potentials and Physical Properties of Complex Plasmas

    SciTech Connect

    Ramazanov, T. S.; Dzhumagulova, K. N.; Gabdullin, M. T.; Omarbakiyeva, Y. A.

    2009-11-10

    Microscopic, thermodynamic and transport properties of complex plasmas are investigated on the basis of effective potentials of interparticle interaction. These potentials take into account correlation effects and quantum-mechanical diffraction. Plasma composition, thermodynamic functions of hydrogen and helium plasmas are obtained for a wide region of coupling parameter. Collision processes in partially ionized plasma are considered; some kinetic characteristics such as phase shift, scattering cross section, bremsstrahlung cross section and absorption coefficient are investigated. Dynamic and transport properties of dusty plasma are studied by computer simulation method of the Langevin dynamics.

  10. 3D Printed Robotic Hand

    NASA Technical Reports Server (NTRS)

    Pizarro, Yaritzmar Rosario; Schuler, Jason M.; Lippitt, Thomas C.

    2013-01-01

    Dexterous robotic hands are changing the way robots and humans interact and use common tools. Unfortunately, the complexity of the joints and actuations drive up the manufacturing cost. Some cutting edge and commercially available rapid prototyping machines now have the ability to print multiple materials and even combine these materials in the same job. A 3D model of a robotic hand was designed using Creo Parametric 2.0. Combining "hard" and "soft" materials, the model was printed on the Object Connex350 3D printer with the purpose of resembling as much as possible the human appearance and mobility of a real hand while needing no assembly. After printing the prototype, strings where installed as actuators to test mobility. Based on printing materials, the manufacturing cost of the hand was $167, significantly lower than other robotic hands without the actuators since they have more complex assembly processes.

  11. Mode-coupling instability of monolayer complex (dusty) plasmas

    NASA Astrophysics Data System (ADS)

    Zhdanov, Sergey; Ivlev, Alexei; Morfill, Gregor

    2010-05-01

    Strongly coupled complex (dusty) plasmas give us a unique opportunity to go beyond the limits of continuous media and study various generic processes occurring in liquids or solids, in regimes ranging from the onset of cooperative phenomena to large strongly coupled systems at the most detailed kinetic (atomistic) level. On the other hand, there is certain peculiarity of the interparticle interactions in complex plasmas. This can be easily understood if we divide the complete set of elementary charges in complex plasmas into two distinct categories - a subsystem of charges bound to the microparticles, and a subsystem of free plasma charges in the surrounding wakes. Plasma wakes play the role of a "third body" in the mutual particle-particle interaction and, hence, make the pair interaction nonreciprocal. We carried out rigorous theoretical investigation of the DL wave mode coupling occurring in 2D complex plasmas due to particle-wake interactions. The analysis of the mode coupling shows that if the strength of the vertical confinement is below a certain critical value, then resonance coupling between the longitudinal in-plane mode and out-of-plane mode sets in. This results in the emergence of a hybrid mode and drives the mode-coupling instability. The universal dependence of the critical confinement frequency on plasma parameters is calculated, which allows us to specify the conditions when stable 2D highly ordered complex plasma can be formed in experiments.

  12. 3-D Technology Approaches for Biological Ecologies

    NASA Astrophysics Data System (ADS)

    Liu, Liyu; Austin, Robert; U. S-China Physical-Oncology Sciences Alliance (PS-OA) Team

    Constructing three dimensional (3-D) landscapes is an inevitable issue in deep study of biological ecologies, because in whatever scales in nature, all of the ecosystems are composed by complex 3-D environments and biological behaviors. Just imagine if a 3-D technology could help complex ecosystems be built easily and mimic in vivo microenvironment realistically with flexible environmental controls, it will be a fantastic and powerful thrust to assist researchers for explorations. For years, we have been utilizing and developing different technologies for constructing 3-D micro landscapes for biophysics studies in in vitro. Here, I will review our past efforts, including probing cancer cell invasiveness with 3-D silicon based Tepuis, constructing 3-D microenvironment for cell invasion and metastasis through polydimethylsiloxane (PDMS) soft lithography, as well as explorations of optimized stenting positions for coronary bifurcation disease with 3-D wax printing and the latest home designed 3-D bio-printer. Although 3-D technologies is currently considered not mature enough for arbitrary 3-D micro-ecological models with easy design and fabrication, I hope through my talk, the audiences will be able to sense its significance and predictable breakthroughs in the near future. This work was supported by the State Key Development Program for Basic Research of China (Grant No. 2013CB837200), the National Natural Science Foundation of China (Grant No. 11474345) and the Beijing Natural Science Foundation (Grant No. 7154221).

  13. Void Closure in Complex Plasmas under Microgravity Conditions

    SciTech Connect

    Lipaev, A. M.; Molotkov, V. I.; Fortov, V. E.; Khrapak, A. G.; Naumkin, V. N.; Khrapak, S. A.; Morfill, G. E.; Ivlev, A. V.; Thomas, H. M.; Ivanov, A. I.; Tretschev, S. E.; Padalka, G. I.

    2007-06-29

    We describe the first observation of a void closure in complex plasma experiments under microgravity conditions performed with the Plasma-Kristall (PKE-Nefedov) facility on board the International Space Station. The void--a grain-free region in the central part of the discharge where the complex plasma is generated--has been formed under most of the plasma conditions and thought to be an inevitable effect. However, we demonstrate in this Letter that an appropriate tune of the discharge parameters allows the void to close. This experimental achievement along with its theoretical interpretation opens new perspectives in engineering new experiments with large quasi-isotropic void-free complex plasma clouds in microgravity conditions.

  14. Structural interpretation of upper crust of the Khibiny area on the complex of geological and geophysical data and the results of 3D seismic and density modeling

    NASA Astrophysics Data System (ADS)

    Zhirov, Dmitry; Glaznev, Victor; Zhirova, Anzhela

    2015-04-01

    The area considered is located in the central part of the Kola Peninsula and represents a part of tectonically compound terrane, consisting of the AR, PR and PZ geological structures of the East of Fennoscandian shield (NW Russia). The Khibiny massif (PZ) intrudes the Archean complexes (the northern contact) and the Paleoproterozoic volcanogenic-sedimentary Imandra-Varzuga complex (southern and SW-contacts). Moreover this district includes several PGE-bearing layered mafic-ultramafic intrusions, which are related with Neo Archaean ÷ Paleoproterozoic rifting and plume activity (LIP). According to the previous conceptions the shape of the Khibiny multiphase pluton is close to the asymmetrical lopolit, characterized by the steep eastern and northern contacts and the gentler south and west contacts. The results of the 3D seismic and density modelling showed two correlated local high-velocity and high-density anomalies with dimensions of 5 x 10 km approximately in central part of the Khibiny massif (1) and close to contact with Imandra-Varzuga sedimentary-volcanic complex (2). The first anomaly cannot be explained by "substance" factor only (titanomagnetite-apatite ore bodies), as it has a structural disconformity to general structure of the pluton. According to the numerous instrumental measurements the actual values of stress are significantly greater than values calculated by weight of rocks. It is important the main normal axis of compressive stress has usually quasi-horizontal position. Thus, the zone of abnormally high tectonic stress is the best explanation for this anomaly. The quick isostatic uplift of the massif after the digression of the last glacier, during which the rocks did not have time to unload, can be a source of the increased horizontal stress. Based on the properties of typical rocks and geological structure of the region the second anomaly is well interpreted by large layered intrusion of Fedorova-Pana type, subsurface of which is cut by Khibiny

  15. Bootstrapping 3D fermions

    NASA Astrophysics Data System (ADS)

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-01

    We study the conformal bootstrap for a 4-point function of fermions < ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge C T . We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N . We also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  16. Precursor solitons in a flowing complex plasma

    NASA Astrophysics Data System (ADS)

    Bandyopadhyay, Pintu; Jaiswal, Surabhi; Sen, Abhijit

    2015-11-01

    We report the first experimental observation of precursor solitons in a flowing dusty plasma. The nonlinear solitary dust acoustic waves (DAWs) are excited by a supersonic mass flow of the dust particles passing over an electrostatic potential hill. In a frame where the fluid is stationary and the hill is moving the solitons propagate in the upstream direction while wake structures consisting of linear DAWs are seen to propagate in the downstream direction. The experiments have been carried out in a U-shaped Dusty Plasma Experimental (DPEx) device where kaolin particles are immersed in a DC discharge argon plasma to form the dusty plasma and a floating wire mounted on the cathode creates a potential hill. The dust flow is induced by sudden changes in the hill height and the solitary structures are seen only for supersonic flows and up to an upper limit of the flow. A theoretical model description of the phenomenon will be provided and some practical implications of such precursor excitations for a charged object moving in a plasma will be discussed.

  17. Kinetics of complex plasma with liquid droplets

    SciTech Connect

    Misra, Shikha; Sodha, M. S.; Mishra, S. K.

    2013-12-15

    This paper provides a theoretical basis for the reduction of electron density by spray of water (or other liquids) in hot plasma. This phenomenon has been observed in a hypersonic flight experiment for relief of radio black out, caused by high ionization in the plasma sheath of a hypersonic vehicle, re-entering the atmosphere. The analysis incorporates a rather little known phenomenon for de-charging of the droplets, viz., evaporation of ions from the surface and includes the charge balance on the droplets and number cum energy balance of electrons, ions, and neutral molecules; the energy balance of the evaporating droplets has also been taken into account. The analysis has been applied to a realistic situation and the transient variations of the charge and radius of water droplets, and other plasma parameters have been obtained and discussed. The analysis through made in the context of water droplets is applicable to all liquids.

  18. Kinetics of complex plasma with liquid droplets

    NASA Astrophysics Data System (ADS)

    Misra, Shikha; Mishra, S. K.; Sodha, M. S.

    2013-12-01

    This paper provides a theoretical basis for the reduction of electron density by spray of water (or other liquids) in hot plasma. This phenomenon has been observed in a hypersonic flight experiment for relief of radio black out, caused by high ionization in the plasma sheath of a hypersonic vehicle, re-entering the atmosphere. The analysis incorporates a rather little known phenomenon for de-charging of the droplets, viz., evaporation of ions from the surface and includes the charge balance on the droplets and number cum energy balance of electrons, ions, and neutral molecules; the energy balance of the evaporating droplets has also been taken into account. The analysis has been applied to a realistic situation and the transient variations of the charge and radius of water droplets, and other plasma parameters have been obtained and discussed. The analysis through made in the context of water droplets is applicable to all liquids.

  19. [Real time 3D echocardiography].

    PubMed

    Bauer, F; Shiota, T; Thomas, J D

    2001-07-01

    Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients. PMID:11494630

  20. [Real time 3D echocardiography

    NASA Technical Reports Server (NTRS)

    Bauer, F.; Shiota, T.; Thomas, J. D.

    2001-01-01

    Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients.

  1. Diagnosis in Complex Plasmas for Microgravity Experiments (PK-3 plus)

    SciTech Connect

    Takahashi, Kazuo; Hayashi, Yasuaki; Thomas, Hubertus M.; Morfill, Gregor E.; Ivlev, Alexei V.; Adachi, Satoshi

    2008-09-07

    Microgravity gives the complex (dusty) plasmas, where dust particles are embedded in complete charge neutral region of bulk plasma. The dust clouds as an uncompressed strongly coupled Coulomb system correspond to atomic model with several physical phenomena, crystallization, phase transition, and so on. As the phenomena tightly connect to plasma states, it is significant to understand plasma parameters such as electron density and temperature. The present work shows the electron density in the setup for microgravity experiments currently onboard on the International Space Station.

  2. Complex plasma research on ISS past, present, and future facilities

    NASA Astrophysics Data System (ADS)

    Seurig, R.; Morfill, G.; Fortov, V.; Hofmann, P.

    2007-11-01

    The research in dusty plasma, also known as complex plasma, under prolonged microgravity condition took its first steps in 1998 onboard the Russian Space Station MIR: cosmonauts Vladimir Solovyov and Pavel Vinogradov conducted the first experiments to obtain plasma-dust crystals in the 'Plazmennyi Kristall 1'(PK-1) device using the sun as a 'natural' ionization source. This experiment was followed afterwards by the PK-2 already utilizing its own DC plasma generator. A major step came only three years later with the PKE-Nefedov facility (formerly called PKE-3). Launched in February 2001 and operated in over 13 missions for five consecutive years in the Russian Segment of the International Space Station ISS, this bilateral German-Russian research facility has already shown some surprising, new behavior of radio-frequency induced complex plasmas. An advanced model of PKE-Nefedov, the PK-3 Plus experiment apparatus, is getting readied to be launched to ISS on Progress Cargo spacecraft 20P. Additional developments are in progress to continue this exciting growing research field with: (a) PK-4 utilizing high voltage DC controlled plasma, and (b) IMPACT Laboratory, the European Space Agency's next generation premier research laboratory for plasma and dust physics on the ISS. The paper will provide background information of each of the complex plasma research facilities.

  3. BEAMS3D Neutral Beam Injection Model

    SciTech Connect

    Lazerson, Samuel

    2014-04-14

    With the advent of applied 3D fi elds in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous velocity reduction, and pitch angle scattering are modeled with the ADAS atomic physics database [1]. Benchmark calculations are presented to validate the collisionless particle orbits, neutral beam injection model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields.

  4. TACO3D. 3-D Finite Element Heat Transfer Code

    SciTech Connect

    Mason, W.E.

    1992-03-04

    TACO3D is a three-dimensional, finite-element program for heat transfer analysis. An extension of the two-dimensional TACO program, it can perform linear and nonlinear analyses and can be used to solve either transient or steady-state problems. The program accepts time-dependent or temperature-dependent material properties, and materials may be isotropic or orthotropic. A variety of time-dependent and temperature-dependent boundary conditions and loadings are available including temperature, flux, convection, and radiation boundary conditions and internal heat generation. Additional specialized features treat enclosure radiation, bulk nodes, and master/slave internal surface conditions (e.g., contact resistance). Data input via a free-field format is provided. A user subprogram feature allows for any type of functional representation of any independent variable. A profile (bandwidth) minimization option is available. The code is limited to implicit time integration for transient solutions. TACO3D has no general mesh generation capability. Rows of evenly-spaced nodes and rows of sequential elements may be generated, but the program relies on separate mesh generators for complex zoning. TACO3D does not have the ability to calculate view factors internally. Graphical representation of data in the form of time history and spatial plots is provided through links to the POSTACO and GRAPE postprocessor codes.

  5. An Assessment of the Value of Full Tensor Gradient Gravity Data for Determining 3-D Structure in an Integrated Geophysical Interpretation of the Styldrift Region, Bushveld Complex, South Africa

    NASA Astrophysics Data System (ADS)

    Coomber, S. J.; Webb, S. J.

    2006-12-01

    The Bushveld Complex (2 060 2 054 Ma) is the largest known layered mafic intrusion in the world, at 7-9 km thick and covering approximately 65 000 km2, and is mined for its high grades of PGEs and chromium. Styldrift lies in a structurally complex region (due to the intrusion of the Pilanesburg, approximately 1 300 Ma) where dykes, faults, potholes and Iron-Rich Ultramafic Pegmatoids (IRUPs) present a problem to mining activities. Interpretation of 3-D seismic data, constrained by drill-holes, has produced a 3-D geological model in gOcad, which will assist in mine design and planning. A 1 km2 grid over the 3-D geological model has had high resolution ground gravity and ground magnetic data collected over it. Values of the vertical gravitational component were used to calculate the Full Tensor Gradient (FTG) gravity components, by first constructing the equivalent layer. Airborne FTG gravity data have been flown over the area, which may be compared to the calculated ground data, to test the accuracy of the FTG calculation. Aeromagnetic data over the region may also be compared to the ground data. The calculated FTG gravity data and magnetic data were used to run inversions (steepest descent and UBC algorithms) on the 3-D geological model. Highly reliable inversions of the FTG gravity data adjusted the lithological contacts of the 3-D geological model, constrained by seismic and borehole data, as well as densities of norites and anorthosites in the model, constrained by down-hole density measurements. A second 1 km2 grid, in close proximity to the first grid but with no corresponding seismic data, also had gravity and magnetic data (both ground and airborne) collected over it. A simple 3-D geological model was constructed, with lithological contacts and densities constrained by borehole data. Inversions of the calculated FTG gravity and magnetic data, and extending geological trends of the first geological model, lead to improvements in this geological model.

  6. Molecular dynamics simulation of complex plasmas: interaction of nonlinear waves

    NASA Astrophysics Data System (ADS)

    Durniak, Celine; Samsonov, Dmitry

    2008-11-01

    Complex plasmas consist of micron sized microspheres immersed into ordinary ion-electron plasmas. They exist in solid, liquid, gaseous states and exhibit a range of dynamic phenomena such as waves, solitons, phase transitions, heat transfer. These phenomena can be modelled in complex plasmas at the microscopic or ``molecular'' scale, which is almost impossible in ordinary solids and liquids. We simulate a monolayer complex plasma consisting of 3000 negatively-charged particles (or grains) with the help of molecular dynamics computer simulations. The equations of grain motion are solved using a 5^th order Runge Kutta method taking into account interaction of every grain with each other via a Yukawa potential. The grains are confined more strongly in the vertical direction than in the horizontal. After seeding the grains randomly the code is run until the equilibrium is reached as the grain kinetics energy reduces due to damping force equal to the neutral friction in the experiments and a monolayer crystal lattice is formed. Then we investigate interactions between nonlinear waves in a monolayer strongly coupled complex plasma moving in three dimensions. Different excitations are applied during a short time symmetrically on both sides of the lattice. Structural properties and nonlinear waves characteristics are examined as the pulses propagate across the complex plasma in opposite directions.

  7. Comparison of the effect of simple and complex acquisition trajectories on the 2D SPR and 3D voxelized differences for dedicated breast CT imaging

    NASA Astrophysics Data System (ADS)

    Shah, Jainil P.; Mann, Steve D.; McKinley, Randolph L.; Tornai, Martin P.

    2014-03-01

    The 2D scatter-to-primary (SPR) ratios and 3D voxelized difference volumes were characterized for a cone beam breast CT scanner capable of arbitrary (non-traditional) 3D trajectories. The CT system uses a 30x30cm2 flat panel imager with 197 micron pixellation and a rotating tungsten anode x-ray source with 0.3mm focal spot, with an SID of 70cm. Data were acquired for two cylindrical phantoms (12.5cm and 15cm diameter) filled with three different combinations of water and methanol yielding a range of uniform densities. Projections were acquired with two acquisition trajectories: 1) simple-circular azimuthal orbit with fixed tilt; and 2) saddle orbit following a +/-15° sinusoidal trajectory around the object. Projection data were acquired in 2x2 binned mode. Projections were scatter corrected using a beam stop array method, and the 2D SPR was measured on the projections. The scatter corrected and uncorrected data were then reconstructed individually using an iterative ordered subsets convex algorithm, and the 3D difference volumes were calculated as the absolute difference between the two. Results indicate that the 2D SPR is ~7-15% higher on projections with greatest tilt for the saddle orbit, due to the longer x-ray path length through the volume, compared to the 0° tilt projections. Additionally, the 2D SPR increases with object diameter as well as density. The 3D voxelized difference volumes are an estimate of the scatter contribution to the reconstructed attenuation coefficients on a voxel level. They help visualize minor deficiencies and artifacts in the volumes due to correction methods.

  8. Use of GIS and 3D Modeling for Development and Conceptualization of a Performance Assessment Model for Decommissioning of a Complex Site

    SciTech Connect

    Esh, D. W.; Gross, A. J.; Thaggard, M.

    2006-07-01

    Geographic Information Systems (GIS) and 3D geo-spatial modeling were employed to facilitate development and conceptualization of a performance assessment (PA) model that will be used to evaluate the health impacts of residual radioactivity at a former nuclear materials processing facility site in New York. Previous operations have resulted in a number of different sources of radiological contamination that must be assessed during site decommissioning. A performance assessment model is being developed to estimate radiological dose to potential receptors through the simulation of the release and transport of radionuclides, and exposure to residual contamination for hundreds to thousands of years in the future. A variety of inputs are required to parameterize the performance assessment model, such as: distance from the waste to surface water bodies, thickness of geologic units for saturated transport, saturated thickness of the geologic units, and spatial and temporal average of percent of waste that is saturated. GIS and 3D modeling are used to analyze and abstract aleatory uncertainty associated with the dimensionality of the geologic system into epistemic uncertainty for one- and two-dimensional process models for flow and transport of radionuclides. Three-dimensional geo-spatial modeling was used to develop the geologic framework and the geometrical representation of the residual contamination within the geologic framework. GIS was used in the initial development and parameterization of the transport pathways, to provide spatial context to the PA model, and to link it to the 3D geologic framework and contamination geometry models. Both the GIS and 3-D modeling were used to interpret the results of runs of the PA model. (authors)

  9. Dust Cloud Dynamics in Complex Plasma Afterglow

    SciTech Connect

    Layden, B.; Samarian, A. A.; Vladimirov, S. V.; Coueedel, L.

    2008-09-07

    Experimental observations of dust cloud dynamics in a RF discharge afterglow are presented. Image analysis is used to extract information from videos taken of the plasma. Estimations of the mean confining electric field have been made for different experimental conditions using a model for the contraction of the dust cloud. Dust particle trajectories in the late afterglow evidence the co-existence of positively and negatively charged dust particles.

  10. Clinical applications of 3-D dosimeters

    NASA Astrophysics Data System (ADS)

    Wuu, Cheng-Shie

    2015-01-01

    Both 3-D gels and radiochromic plastic dosimeters, in conjunction with dose image readout systems (MRI or optical-CT), have been employed to measure 3-D dose distributions in many clinical applications. The 3-D dose maps obtained from these systems can provide a useful tool for clinical dose verification for complex treatment techniques such as IMRT, SRS/SBRT, brachytherapy, and proton beam therapy. These complex treatments present high dose gradient regions in the boundaries between the target and surrounding critical organs. Dose accuracy in these areas can be critical, and may affect treatment outcome. In this review, applications of 3-D gels and PRESAGE dosimeter are reviewed and evaluated in terms of their performance in providing information on clinical dose verification as well as commissioning of various treatment modalities. Future interests and clinical needs on studies of 3-D dosimetry are also discussed.

  11. Sensitivity Analysis in Complex Plasma Chemistry Models

    NASA Astrophysics Data System (ADS)

    Turner, Miles

    2015-09-01

    The purpose of a plasma chemistry model is prediction of chemical species densities, including understanding the mechanisms by which such species are formed. These aims are compromised by an uncertain knowledge of the rate constants included in the model, which directly causes uncertainty in the model predictions. We recently showed that this predictive uncertainty can be large--a factor of ten or more in some cases. There is probably no context in which a plasma chemistry model might be used where the existence of uncertainty on this scale could not be a matter of concern. A question that at once follows is: Which rate constants cause such uncertainty? In the present paper we show how this question can be answered by applying a systematic screening procedure--the so-called Morris method--to identify sensitive rate constants. We investigate the topical example of the helium-oxygen chemistry. Beginning with a model with almost four hundred reactions, we show that only about fifty rate constants materially affect the model results, and as few as ten cause most of the uncertainty. This means that the model can be improved, and the uncertainty substantially reduced, by focussing attention on this tractably small set of rate constants. Work supported by Science Foundation Ireland under grant08/SRC/I1411, and by COST Action MP1101 ``Biomedical Applications of Atmospheric Pressure Plasmas.''

  12. 3D microscope

    NASA Astrophysics Data System (ADS)

    Iizuka, Keigo

    2008-02-01

    In order to circumvent the fact that only one observer can view the image from a stereoscopic microscope, an attachment was devised for displaying the 3D microscopic image on a large LCD monitor for viewing by multiple observers in real time. The principle of operation, design, fabrication, and performance are presented, along with tolerance measurements relating to the properties of the cellophane half-wave plate used in the design.

  13. Kohn-Sham calculations of NMR shifts for paramagnetic 3d metal complexes: protocols, delocalization error, and the curious amide proton shifts of a high-spin iron(ii) macrocycle complex.

    PubMed

    Martin, Bob; Autschbach, Jochen

    2016-08-01

    A theory for the nuclear chemical shifts of molecules in arbitrary spin states is applied to a set of paramagnetic organometallic complexes of 3d metals. Ligand chemical shifts are calculated and analyzed using Kohn-Sham (KS) density functional theory with and without relativistic corrections. The roles of the KS delocalization error, Gaussian-type versus Slater-type basis sets, relativistic effects (scalar and spin-orbit), and zero field splitting (ZFS) are investigated. A strong functional dependence of the chemical shifts is apparent and correlated with the delocalization error. The functional dependence is between one and two orders of magnitude larger than variations of the NMR shifts due the other influences that are investigated. ZFS effects are negligible in the determination of the NMR chemical shifts of the complexes except at very low temperatures. The DFT calculated shifts agree reasonably well with experiment. A 73 ppm difference in the NMR shifts of the two protons in the amide groups of a high-spin Fe(ii) macrocycle complex arises from selective O → Fe dative bonding that only involves the transfer of β spin density, along with orbital delocalization throughout the ligand bonding framework which electronically couples the coordinating oxygen lone pair orbitals directly to the amide trans proton. PMID:26952694

  14. Plasmakristall-4: A microgravity complex plasma facility on the way to launch

    NASA Astrophysics Data System (ADS)

    Pustylnik, Mikhail; Thomas, Hubertus; Fortov, Vladimir; Thoma, Markus; Lipaev, Andrey; Morfill, Gregor; Molotkov, Vladimir; Usachev, Alexander; Zobnin, Andrey; Tarantik, Karl; Albrecht, Sebastian; Deysenroth, Christian; Rau, Christian; Mitic, Slobodan; Nosenko, Vladimir; Fink, Martin; Prof

    Complex plasmas, a special case of dusty plasmas, are one of the most interesting physical objects to be studied under microgravity conditions. A way from dusty plasmas to complex plasmas was revealed when strong coupling phenomena in the dust subsystem were first theoretically predicted and then observed under ground laboratory conditions. Complex plasmas are, therefore, dusty plasmas, which are prepared intentionally to study generic phenomena of condensed matter physics. Complex plasmas have several advantages in this respect: Real-time, virtually undamped dynamics of the system can be resolved on the kinetic level, i.e. on the level of single microparticles. Under ground laboratory conditions the microparticles are strongly affected by the gravitational force, which has to be compensated by strong electrostatic forces. Therefore, the volume occupied by the microparticles is limited to sheath region. This makes formation of uniform 3D structures under ground condition almost impossible. Microgravity is therefore essential for studying 3D complex plasma systems. The next lab for complex plasma research under mug-conditions will be PK-4, a joint Russian-European project. The special feature of PK-4 (with respect to its predecessor PK-3 Plus on the ISS) is that it will allow to study the fluid phenomena. Geometry of the plasma chamber (a glass tube with the working part of about 200 mm long and 30 mm diameter) implies presence of micropaticle flows along its axis. A custom-made power supply will create either a DC or polarity-switched discharge inside the chamber filled with either neon or argon. In the DC mode the negatively-charged microparticles will drift opposite to the electric field. Polarity switching can be done with up to several kHz frequency, which will allow the discharge to change polarity, whereas heavy microparticles will be insensitive to such fast variations of the electric field. In this way, microparticles will be trapped inside the plasma

  15. 3-D seismology in the Arabian Gulf

    SciTech Connect

    Al-Husseini, M.; Chimblo, R.

    1995-08-01

    Since 1977 when Aramco and GSI (Geophysical Services International) pioneered the first 3-D seismic survey in the Arabian Gulf, under the guidance of Aramco`s Chief Geophysicist John Hoke, 3-D seismology has been effectively used to map many complex subsurface geological phenomena. By the mid-1990s extensive 3-D surveys were acquired in Abu Dhabi, Oman, Qatar and Saudi Arabia. Also in the mid-1990`s Bahrain, Kuwait and Dubai were preparing to record surveys over their fields. On the structural side 3-D has refined seismic maps, focused faults and fractures systems, as well as outlined the distribution of facies, porosity and fluid saturation. In field development, 3D has not only reduced drilling costs significantly, but has also improved the understanding of fluid behavior in the reservoir. In Oman, Petroleum Development Oman (PDO) has now acquired the first Gulf 4-D seismic survey (time-lapse 3D survey) over the Yibal Field. The 4-D survey will allow PDO to directly monitor water encroachment in the highly-faulted Cretaceous Shu`aiba reservoir. In exploration, 3-D seismology has resolved complex prospects with structural and stratigraphic complications and reduced the risk in the selection of drilling locations. The many case studies from Saudi Arabia, Oman, Qatar and the United Arab Emirates, which are reviewed in this paper, attest to the effectiveness of 3D seismology in exploration and producing, in clastics and carbonates reservoirs, and in the Mesozoic and Paleozoic.

  16. A complex plasma device of large surface area

    SciTech Connect

    Nakamura, Y.; Ishihara, O.

    2008-03-15

    A novel complex plasma device (YCOPEX) to create two-dimensional monolayer plasma crystals of a large surface area of 15x90 cm{sup 2} is described. The YCOPEX, in which a plasma is produced by a rf discharge of argon gas, is designed to utilize gravitational force to study fundamental physics of complex plasmas. The device may be used for observation of spatial change of a phase state, propagation of waves, and collisions of flowing dust particles with an obstacle. As an example of experiments, neutral drag forces on microspheres are measured using the gravitational force on those particles. The obtained neutral drag force agrees reasonably with the values estimated from Epstein's formula.

  17. Multiviewer 3D monitor

    NASA Astrophysics Data System (ADS)

    Kostrzewski, Andrew A.; Aye, Tin M.; Kim, Dai Hyun; Esterkin, Vladimir; Savant, Gajendra D.

    1998-09-01

    Physical Optics Corporation has developed an advanced 3-D virtual reality system for use with simulation tools for training technical and military personnel. This system avoids such drawbacks of other virtual reality (VR) systems as eye fatigue, headaches, and alignment for each viewer, all of which are due to the need to wear special VR goggles. The new system is based on direct viewing of an interactive environment. This innovative holographic multiplexed screen technology makes it unnecessary for the viewer to wear special goggles.

  18. 3D Audio System

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Ames Research Center research into virtual reality led to the development of the Convolvotron, a high speed digital audio processing system that delivers three-dimensional sound over headphones. It consists of a two-card set designed for use with a personal computer. The Convolvotron's primary application is presentation of 3D audio signals over headphones. Four independent sound sources are filtered with large time-varying filters that compensate for motion. The perceived location of the sound remains constant. Possible applications are in air traffic control towers or airplane cockpits, hearing and perception research and virtual reality development.

  19. Collective Dynamics of Complex Plasma Bilayers

    SciTech Connect

    Hartmann, P.; Donko, Z.; Kalman, G. J.; Kyrkos, S.; Golden, K. I.; Rosenberg, M.

    2009-12-11

    A classical dusty plasma experiment was performed using two different dust grain sizes to form a strongly coupled asymmetric bilayer (two closely spaced interacting monolayers) of two species of charged dust particles. The observation and analysis of the thermally excited particle oscillations revealed the collective mode structure and dispersion (wave propagation) in this system; in particular, the existence of the theoretically predicted k=0 energy (frequency) gap was verified. Equilibrium molecular-dynamics simulations were performed to emulate the experiment, assuming Yukawa-type interparticle interaction. The simulations and analytic calculations based both on lattice summation and on the quasilocalized charge approximation approach are in good agreement with the experimental findings and help in identifying and characterizing the observed phenomena.

  20. 3D bioprinting of tissues and organs.

    PubMed

    Murphy, Sean V; Atala, Anthony

    2014-08-01

    Additive manufacturing, otherwise known as three-dimensional (3D) printing, is driving major innovations in many areas, such as engineering, manufacturing, art, education and medicine. Recent advances have enabled 3D printing of biocompatible materials, cells and supporting components into complex 3D functional living tissues. 3D bioprinting is being applied to regenerative medicine to address the need for tissues and organs suitable for transplantation. Compared with non-biological printing, 3D bioprinting involves additional complexities, such as the choice of materials, cell types, growth and differentiation factors, and technical challenges related to the sensitivities of living cells and the construction of tissues. Addressing these complexities requires the integration of technologies from the fields of engineering, biomaterials science, cell biology, physics and medicine. 3D bioprinting has already been used for the generation and transplantation of several tissues, including multilayered skin, bone, vascular grafts, tracheal splints, heart tissue and cartilaginous structures. Other applications include developing high-throughput 3D-bioprinted tissue models for research, drug discovery and toxicology. PMID:25093879

  1. 3D-full wave and kinetics numerical modelling of electron cyclotron resonance ion sources plasma: steps towards self-consistency

    NASA Astrophysics Data System (ADS)

    Mascali, David; Torrisi, Giuseppe; Neri, Lorenzo; Sorbello, Gino; Castro, Giuseppe; Celona, Luigi; Gammino, Santo

    2015-01-01

    Electron Cyclotron Resonance (ECR) ion Sources are the most performing machines for the production of intense beams of multi-charged ions in fundamental science, applied physics and industry. Investigation of plasma dynamics in ECRIS still remains a challenge. A better comprehension of electron heating, ionization and diffusion processes, ion confinement and ion beam formation is mandatory in order to increase ECRIS performances both in terms of output beams currents, charge states, beam quality (emittance minimization, beam halos suppression, etc.). Numerical solution of Vlasov equation via kinetic codes coupled to FEM solvers is ongoing at INFN-LNS, based on a PIC strategy. Preliminary results of the modeling will be shown about wave-plasma interaction and electron-ion confinement: the obtained results are very helpful to better understand the influence of the different parameters (especially RF frequency and power) on the ion beam formation mechanism.

  2. Kinetic theory of nonlinear transport phenomena in complex plasmas

    SciTech Connect

    Mishra, S. K.; Sodha, M. S.

    2013-03-15

    In contrast to the prevalent use of the phenomenological theory of transport phenomena, a number of transport properties of complex plasmas have been evaluated by using appropriate expressions, available from the kinetic theory, which are based on Boltzmann's transfer equation; in particular, the energy dependence of the electron collision frequency has been taken into account. Following the recent trend, the number and energy balance of all the constituents of the complex plasma and the charge balance on the particles is accounted for; the Ohmic loss has also been included in the energy balance of the electrons. The charging kinetics for the complex plasma comprising of uniformly dispersed dust particles, characterized by (i) uniform size and (ii) the Mathis, Rumpl, and Nordsieck power law of size distribution has been developed. Using appropriate expressions for the transport parameters based on the kinetic theory, the system of equations has been solved to investigate the parametric dependence of the complex plasma transport properties on the applied electric field and other plasma parameters; the results are graphically illustrated.

  3. Fabrication of 3D Silicon Sensors

    SciTech Connect

    Kok, A.; Hansen, T.E.; Hansen, T.A.; Lietaer, N.; Summanwar, A.; Kenney, C.; Hasi, J.; Da Via, C.; Parker, S.I.; /Hawaii U.

    2012-06-06

    Silicon sensors with a three-dimensional (3-D) architecture, in which the n and p electrodes penetrate through the entire substrate, have many advantages over planar silicon sensors including radiation hardness, fast time response, active edge and dual readout capabilities. The fabrication of 3D sensors is however rather complex. In recent years, there have been worldwide activities on 3D fabrication. SINTEF in collaboration with Stanford Nanofabrication Facility have successfully fabricated the original (single sided double column type) 3D detectors in two prototype runs and the third run is now on-going. This paper reports the status of this fabrication work and the resulted yield. The work of other groups such as the development of double sided 3D detectors is also briefly reported.

  4. Recording stereoscopic 3D neurosurgery with a head-mounted 3D camera system.

    PubMed

    Lee, Brian; Chen, Brian R; Chen, Beverly B; Lu, James Y; Giannotta, Steven L

    2015-06-01

    Stereoscopic three-dimensional (3D) imaging can present more information to the viewer and further enhance the learning experience over traditional two-dimensional (2D) video. Most 3D surgical videos are recorded from the operating microscope and only feature the crux, or the most important part of the surgery, leaving out other crucial parts of surgery including the opening, approach, and closing of the surgical site. In addition, many other surgeries including complex spine, trauma, and intensive care unit procedures are also rarely recorded. We describe and share our experience with a commercially available head-mounted stereoscopic 3D camera system to obtain stereoscopic 3D recordings of these seldom recorded aspects of neurosurgery. The strengths and limitations of using the GoPro(®) 3D system as a head-mounted stereoscopic 3D camera system in the operating room are reviewed in detail. Over the past several years, we have recorded in stereoscopic 3D over 50 cranial and spinal surgeries and created a library for education purposes. We have found the head-mounted stereoscopic 3D camera system to be a valuable asset to supplement 3D footage from a 3D microscope. We expect that these comprehensive 3D surgical videos will become an important facet of resident education and ultimately lead to improved patient care. PMID:25620087

  5. 3D ultrafast ultrasound imaging in vivo

    NASA Astrophysics Data System (ADS)

    Provost, Jean; Papadacci, Clement; Esteban Arango, Juan; Imbault, Marion; Fink, Mathias; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu

    2014-10-01

    Very high frame rate ultrasound imaging has recently allowed for the extension of the applications of echography to new fields of study such as the functional imaging of the brain, cardiac electrophysiology, and the quantitative imaging of the intrinsic mechanical properties of tumors, to name a few, non-invasively and in real time. In this study, we present the first implementation of Ultrafast Ultrasound Imaging in 3D based on the use of either diverging or plane waves emanating from a sparse virtual array located behind the probe. It achieves high contrast and resolution while maintaining imaging rates of thousands of volumes per second. A customized portable ultrasound system was developed to sample 1024 independent channels and to drive a 32  ×  32 matrix-array probe. Its ability to track in 3D transient phenomena occurring in the millisecond range within a single ultrafast acquisition was demonstrated for 3D Shear-Wave Imaging, 3D Ultrafast Doppler Imaging, and, finally, 3D Ultrafast combined Tissue and Flow Doppler Imaging. The propagation of shear waves was tracked in a phantom and used to characterize its stiffness. 3D Ultrafast Doppler was used to obtain 3D maps of Pulsed Doppler, Color Doppler, and Power Doppler quantities in a single acquisition and revealed, at thousands of volumes per second, the complex 3D flow patterns occurring in the ventricles of the human heart during an entire cardiac cycle, as well as the 3D in vivo interaction of blood flow and wall motion during the pulse wave in the carotid at the bifurcation. This study demonstrates the potential of 3D Ultrafast Ultrasound Imaging for the 3D mapping of stiffness, tissue motion, and flow in humans in vivo and promises new clinical applications of ultrasound with reduced intra—and inter-observer variability.

  6. 3D polarimetric purity

    NASA Astrophysics Data System (ADS)

    Gil, José J.; San José, Ignacio

    2010-11-01

    From our previous definition of the indices of polarimetric purity for 3D light beams [J.J. Gil, J.M. Correas, P.A. Melero and C. Ferreira, Monogr. Semin. Mat. G. de Galdeano 31, 161 (2004)], an analysis of their geometric and physical interpretation is presented. It is found that, in agreement with previous results, the first parameter is a measure of the degree of polarization, whereas the second parameter (called the degree of directionality) is a measure of the mean angular aperture of the direction of propagation of the corresponding light beam. This pair of invariant, non-dimensional, indices of polarimetric purity contains complete information about the polarimetric purity of a light beam. The overall degree of polarimetric purity is obtained as a weighted quadratic average of the degree of polarization and the degree of directionality.

  7. 3D field harmonics

    SciTech Connect

    Caspi, S.; Helm, M.; Laslett, L.J.

    1991-03-30

    We have developed an harmonic representation for the three dimensional field components within the windings of accelerator magnets. The form by which the field is presented is suitable for interfacing with other codes that make use of the 3D field components (particle tracking and stability). The field components can be calculated with high precision and reduced cup time at any location (r,{theta},z) inside the magnet bore. The same conductor geometry which is used to simulate line currents is also used in CAD with modifications more readily available. It is our hope that the format used here for magnetic fields can be used not only as a means of delivering fields but also as a way by which beam dynamics can suggest correction to the conductor geometry. 5 refs., 70 figs.

  8. 'Bonneville' in 3-D!

    NASA Technical Reports Server (NTRS)

    2004-01-01

    The Mars Exploration Rover Spirit took this 3-D navigation camera mosaic of the crater called 'Bonneville' after driving approximately 13 meters (42.7 feet) to get a better vantage point. Spirit's current position is close enough to the edge to see the interior of the crater, but high enough and far enough back to get a view of all of the walls. Because scientists and rover controllers are so pleased with this location, they will stay here for at least two more martian days, or sols, to take high resolution panoramic camera images of 'Bonneville' in its entirety. Just above the far crater rim, on the left side, is the rover's heatshield, which is visible as a tiny reflective speck.

  9. Numerical Experiments In Strongly Coupled Complex (Dusty) Plasmas

    NASA Astrophysics Data System (ADS)

    Hou, L. J.; Ivlev A.; Hubertus M. T.; Morfill, G. E.

    2010-07-01

    Complex (dusty) plasma is a suspension of micron-sized charged dust particles in a weakly ionized plasma with electrons, ions, and neutral atoms or molecules. Therein, dust particles acquire a few thousand electron charges by absorbing surrounding electrons and ions, and consequently interact with each other via a dynamically screened Coulomb potential while undergoing Brownian motion due primarily to frequent collisions with the neutral molecules. When the interaction potential energy between charged dust particles significantly exceeds their kinetic energy, they become strongly coupled and can form ordered structures comprising liquid and solid states. Since the motion of charged dust particles in complex (dusty) plasmas can be directly observed in real time by using a video camera, such systems have been generally regarded as a promising model system to study many phenomena occurring in solids, liquids and other strongly-coupled systems at the kinetic level, such as phase transitions, transport processes, and collective dynamics. Complex plasma physics has now grown into a mature research field with a very broad range of interdisciplinary facets. In addition to usual experimental and theoretical study, computer simulation in complex plasma plays an important role in bridging experimental observations and theories and in understanding many interesting phenomena observed in laboratory. The present talk will focus on a class of computer simulations that are usually non-equilibrium ones with external perturbation and that mimic the real complex plasma experiments (i. e., numerical experiment). The simulation method, i. e., the so-called Brownian Dynamics methods, will be firstly reviewed and then examples, such as simulations of heat transfer and shock wave propagation, will be present.

  10. Topology dictionary for 3D video understanding.

    PubMed

    Tung, Tony; Matsuyama, Takashi

    2012-08-01

    This paper presents a novel approach that achieves 3D video understanding. 3D video consists of a stream of 3D models of subjects in motion. The acquisition of long sequences requires large storage space (2 GB for 1 min). Moreover, it is tedious to browse data sets and extract meaningful information. We propose the topology dictionary to encode and describe 3D video content. The model consists of a topology-based shape descriptor dictionary which can be generated from either extracted patterns or training sequences. The model relies on 1) topology description and classification using Reeb graphs, and 2) a Markov motion graph to represent topology change states. We show that the use of Reeb graphs as the high-level topology descriptor is relevant. It allows the dictionary to automatically model complex sequences, whereas other strategies would require prior knowledge on the shape and topology of the captured subjects. Our approach serves to encode 3D video sequences, and can be applied for content-based description and summarization of 3D video sequences. Furthermore, topology class labeling during a learning process enables the system to perform content-based event recognition. Experiments were carried out on various 3D videos. We showcase an application for 3D video progressive summarization using the topology dictionary. PMID:22745004

  11. A critical appraisal of asymptotic 3D-to-2D data transformation filters and the potential of complex frequency 2.5-D modeling in seismic full waveform inversion

    NASA Astrophysics Data System (ADS)

    Auer, L.; Greenhalgh, S. A.; Maurer, H. R.; Marelli, S.; Nuber, A.

    2012-04-01

    Seismic full waveform inversion is often based on forward modeling in the computationally attractive 2-D domain. Any solution of the 2-D cartesian wave equation inherently carries the implicit assumption of a line source extended in the out-of-plane medium invariant direction. This implies that the source energy in homogeneous media spreads over the surface of an approximately expanding cylinder, such that the wavefield amplitudes (at least in the far field) scale inversely with the square-root of distance. However, realistic point sources like explosives or airguns, fired in a 3-D medium, generate amplitudes that decay inversely with the first power of distance, since the wavefield expands quasi-spherically in all three dimensions. Usually, practitioners correct for this amplitude difference and the associated phase shift of π/4 by transforming the recorded 3-D field data to the approximate 2-D situation by using simplistic, asymptotic filter algorithms. Such filters operate on a square root of time-sample convolutional basis and implicitly assume straight ray paths and a constant velocity medium. The unsubstantiated usage of these asymptotic filters is in contradiction to their well known limitations. In this study, we present an extensive quantitative appraisal of 3D-to-2D data transformation procedures. Our analysis relies on a simple numerical modeling study, based on propagating 3-D and 2-D wavefields through 2-D media and comparing the true 2-D and the filtered 3-D synthetic data. It is shown that the filtering errors are moderate in purely acoustic situations but become substantial in complex media when arrivals overlap each other or ray paths deviate strongly from straight lines. Normalized root-mean-square deviations up to 5% and maximum relative time domain errors of up to 40% were found in high contrast media, when full elastic treatment was considered. In order to examine if this error translates into a deficient model reconstruction in full waveform

  12. Magmatic Systems in 3-D

    NASA Astrophysics Data System (ADS)

    Kent, G. M.; Harding, A. J.; Babcock, J. M.; Orcutt, J. A.; Bazin, S.; Singh, S.; Detrick, R. S.; Canales, J. P.; Carbotte, S. M.; Diebold, J.

    2002-12-01

    Multichannel seismic (MCS) images of crustal magma chambers are ideal targets for advanced visualization techniques. In the mid-ocean ridge environment, reflections originating at the melt-lens are well separated from other reflection boundaries, such as the seafloor, layer 2A and Moho, which enables the effective use of transparency filters. 3-D visualization of seismic reflectivity falls into two broad categories: volume and surface rendering. Volumetric-based visualization is an extremely powerful approach for the rapid exploration of very dense 3-D datasets. These 3-D datasets are divided into volume elements or voxels, which are individually color coded depending on the assigned datum value; the user can define an opacity filter to reject plotting certain voxels. This transparency allows the user to peer into the data volume, enabling an easy identification of patterns or relationships that might have geologic merit. Multiple image volumes can be co-registered to look at correlations between two different data types (e.g., amplitude variation with offsets studies), in a manner analogous to draping attributes onto a surface. In contrast, surface visualization of seismic reflectivity usually involves producing "fence" diagrams of 2-D seismic profiles that are complemented with seafloor topography, along with point class data, draped lines and vectors (e.g. fault scarps, earthquake locations and plate-motions). The overlying seafloor can be made partially transparent or see-through, enabling 3-D correlations between seafloor structure and seismic reflectivity. Exploration of 3-D datasets requires additional thought when constructing and manipulating these complex objects. As numbers of visual objects grow in a particular scene, there is a tendency to mask overlapping objects; this clutter can be managed through the effective use of total or partial transparency (i.e., alpha-channel). In this way, the co-variation between different datasets can be investigated

  13. Palacios field: A 3-D case history

    SciTech Connect

    McWhorter, R.; Torguson, B.

    1994-12-31

    In late 1992, Mitchell Energy Corporation acquired a 7.75 sq mi (20.0 km{sup 2}) 3-D seismic survey over Palacios field. Matagorda County, Texas. The company shot the survey to help evaluate the field for further development by delineating the fault pattern of the producing Middle Oligocene Frio interval. They compare the mapping of the field before and after the 3-D survey. This comparison shows that the 3-D volume yields superior fault imaging and interpretability compared to the dense 2-D data set. The problems with the 2-D data set are improper imaging of small and oblique faults and insufficient coverage over a complex fault pattern. Whereas the 2-D data set validated a simple fault model, the 3-D volume revealed a more complex history of faulting that includes three different fault systems. This discovery enabled them to reconstruct the depositional and structural history of Palacios field.

  14. Synchronization pattern observed in a complex (dusty) plasma

    NASA Astrophysics Data System (ADS)

    Zhdanov, Sergey; Couedel, Lenaic; Morfill, Gregor

    2015-04-01

    Complex or dusty plasmas are weakly ionized gases containing micron-size particles called dust particles or microparticles. In a laboratory radio-frequency (rf) plasma these particles are negatively charged. Due to their strong interactions with the plasma and with each other, they can form strongly coupled systems. Complex plasmas are ideal model systems for phase transitions, self-organization and transport processes. We report on the kinematics of dust particles during the early stage of mode-coupling induced melting of a two-dimensional plasma crystal. It was found that the formation of the hybrid mode causes the particle vibrations to partially synchronize at the hybrid frequency. The system self-organizes in a rhythmic pattern of alternating in-phase and anti-phase oscillating chains of particles. Phase- and frequency-locked hybrid particle motion in both vertical and horizontal directions is evidenced. The spatial orientation of the synchronization pattern correlates well with the directions of the maximal increment of the shear-free hybrid mode. Dynamically, a two-dimensional plasma crystal can be seen as an ensemble of coupled nonlinear oscillators. Spontaneous emergence of synchronized signals and spontaneous symmetry breaking are typical behaviors in such large populations of interacting units.

  15. 3D PDF - a means of public access to geological 3D - objects, using the example of GTA3D

    NASA Astrophysics Data System (ADS)

    Slaby, Mark-Fabian; Reimann, Rüdiger

    2013-04-01

    In geology, 3D modeling has become very important. In the past, two-dimensional data such as isolines, drilling profiles, or cross-sections based on those, were used to illustrate the subsurface geology, whereas now, we can create complex digital 3D models. These models are produced with special software, such as GOCAD ®. The models can be viewed, only through the software used to create them, or through viewers available for free. The platform-independent PDF (Portable Document Format), enforced by Adobe, has found a wide distribution. This format has constantly evolved over time. Meanwhile, it is possible to display CAD data in an Adobe 3D PDF file with the free Adobe Reader (version 7). In a 3D PDF, a 3D model is freely rotatable and can be assembled from a plurality of objects, which can thus be viewed from all directions on their own. In addition, it is possible to create moveable cross-sections (profiles), and to assign transparency to the objects. Based on industry-standard CAD software, 3D PDFs can be generated from a large number of formats, or even be exported directly from this software. In geoinformatics, different approaches to creating 3D PDFs exist. The intent of the Authority for Mining, Energy and Geology to allow free access to the models of the Geotectonic Atlas (GTA3D), could not be realized with standard software solutions. A specially designed code converts the 3D objects to VRML (Virtual Reality Modeling Language). VRML is one of the few formats that allow using image files (maps) as textures, and to represent colors and shapes correctly. The files were merged in Acrobat X Pro, and a 3D PDF was generated subsequently. A topographic map, a display of geographic directions and horizontal and vertical scales help to facilitate the use.

  16. The 3D Structure of the Apical Complex and Association with the Flagellar Apparatus Revealed by Serial TEM Tomography in Psammosa pacifica, a Distant Relative of the Apicomplexa

    PubMed Central

    Okamoto, Noriko; Keeling, Patrick J.

    2014-01-01

    The apical complex is one of the defining features of apicomplexan parasites, including the malaria parasite Plasmodium, where it mediates host penetration and invasion. The apical complex is also known in a few related lineages, including several non-parasitic heterotrophs, where it mediates feeding behaviour. The origin of the apical complex is unclear, and one reason for this is that in apicomplexans it exists in only part of the life cycle, and never simultaneously with other major cytoskeletal structures like flagella and basal bodies. Here, we used conventional TEM and serial TEM tomography to reconstruct the three dimensional structure of the apical complex in Psammosa pacifica, a predatory relative of apicomplexans and dinoflagellates that retains the archetype apical complex and the flagellar apparatus simultaneously. The P. pacifica apical complex is associated with the gullet and consists of the pseudoconoid, micronemes, and electron dense vesicles. The pseudoconoid is a convex sheet consisting of eight short microtubules, plus a band made up of microtubules that originate from the flagellar apparatus. The flagellar apparatus consists of three microtubular roots. One of the microtubular roots attached to the posterior basal body is connected to bypassing microtubular strands, which are themselves connected to the extension of the pseudoconoid. These complex connections where the apical complex is an extension of the flagellar apparatus, reflect the ancestral state of both, dating back to the common ancestor of apicaomplexans and dinoflagellates. PMID:24392150

  17. Enhancement of Space Plasma Images by Complex Wavelets

    NASA Astrophysics Data System (ADS)

    Souza, Vitor Moura; Domingues, Margarete Oliveira; Mendes, Odim; Pagamisse, Aylton; Stenborg, Guillermo Adrian

    2015-10-01

    The Sun is a natural laboratory for plasma processes. A myriad of instruments aboard satellites and on ground record(ed) the plasma emission in different ranges of the electromagnetic spectrum to help understand such processes. In particular, in the outer part of the solar atmosphere, the solar corona, we can observe a multitude of electrodynamical phenomena. There, the faint corona emission and the associated dynamic plasma structures (e.g., coronal mass ejections—CMEs) recorded in white-light images can be used as basis for some insight of this physical scenario. In order to characterize the dynamics and morphology of such structures in a better way, it seems crucial that some features of those images should be enhanced. To deal with this need, a new approach using a complex wavelet transform methodology was developed. With the proposed methodology, we can highlight the plasma ejections improving the identification of those structures.

  18. Numerical Study of Velocity Shear Stabilization of 3D and Theoretical Considerations for Centrifugally Confined Plasmas and Other Interchange-Limited Fusion Concepts

    SciTech Connect

    Hassam, Adil

    2015-09-21

    We studied the feasibility of resonantly driving GAMs in tokamaks. A numerical simulation was carried out and showed the essential features and limitations. It was shown further that GAMs can damp by phase-mixing, from temperature gradients, or nonlinear detuning, thus broadening the resonance. Experimental implications of this were quantified. Theoretical support was provided for the Maryland Centrifugal Experiment, funded in a separate grant by DOE. Plasma diamagnetism from supersonic rotation was established. A theoretical model was built to match the data. Additional support to the experiment in terms of numerical simulation of the interchange turbulence was provided. Spectra from residual turbulence on account of velocity shear suppression were obtained and compared favorably to experiment. A new drift wave, driven solely by the thermal force, was identified.

  19. Positional Awareness Map 3D (PAM3D)

    NASA Technical Reports Server (NTRS)

    Hoffman, Monica; Allen, Earl L.; Yount, John W.; Norcross, April Louise

    2012-01-01

    The Western Aeronautical Test Range of the National Aeronautics and Space Administration s Dryden Flight Research Center needed to address the aging software and hardware of its current situational awareness display application, the Global Real-Time Interactive Map (GRIM). GRIM was initially developed in the late 1980s and executes on older PC architectures using a Linux operating system that is no longer supported. Additionally, the software is difficult to maintain due to its complexity and loss of developer knowledge. It was decided that a replacement application must be developed or acquired in the near future. The replacement must provide the functionality of the original system, the ability to monitor test flight vehicles in real-time, and add improvements such as high resolution imagery and true 3-dimensional capability. This paper will discuss the process of determining the best approach to replace GRIM, and the functionality and capabilities of the first release of the Positional Awareness Map 3D.

  20. Prominent rocks - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Many prominent rocks near the Sagan Memorial Station are featured in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. Wedge is at lower left; Shark, Half-Dome, and Pumpkin are at center. Flat Top, about four inches high, is at lower right. The horizon in the distance is one to two kilometers away.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  1. 'Diamond' in 3-D

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This 3-D, microscopic imager mosaic of a target area on a rock called 'Diamond Jenness' was taken after NASA's Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time.

    Opportunity has bored nearly a dozen holes into the inner walls of 'Endurance Crater.' On sols 177 and 178 (July 23 and July 24, 2004), the rover worked double-duty on Diamond Jenness. Surface debris and the bumpy shape of the rock resulted in a shallow and irregular hole, only about 2 millimeters (0.08 inch) deep. The final depth was not enough to remove all the bumps and leave a neat hole with a smooth floor. This extremely shallow depression was then examined by the rover's alpha particle X-ray spectrometer.

    On Sol 178, Opportunity's 'robotic rodent' dined on Diamond Jenness once again, grinding almost an additional 5 millimeters (about 0.2 inch). The rover then applied its Moessbauer spectrometer to the deepened hole. This double dose of Diamond Jenness enabled the science team to examine the rock at varying layers. Results from those grindings are currently being analyzed.

    The image mosaic is about 6 centimeters (2.4 inches) across.

  2. 3D Ultrafast Ultrasound Imaging In Vivo

    PubMed Central

    Provost, Jean; Papadacci, Clement; Arango, Juan Esteban; Imbault, Marion; Gennisson, Jean-Luc; Tanter, Mickael; Pernot, Mathieu

    2014-01-01

    Very high frame rate ultrasound imaging has recently allowed for the extension of the applications of echography to new fields of study such as the functional imaging of the brain, cardiac electrophysiology, and the quantitative real-time imaging of the intrinsic mechanical properties of tumors, to name a few, non-invasively and in real time. In this study, we present the first implementation of Ultrafast Ultrasound Imaging in three dimensions based on the use of either diverging or plane waves emanating from a sparse virtual array located behind the probe. It achieves high contrast and resolution while maintaining imaging rates of thousands of volumes per second. A customized portable ultrasound system was developed to sample 1024 independent channels and to drive a 32×32 matrix-array probe. Its capability to track in 3D transient phenomena occurring in the millisecond range within a single ultrafast acquisition was demonstrated for 3-D Shear-Wave Imaging, 3-D Ultrafast Doppler Imaging and finally 3D Ultrafast combined Tissue and Flow Doppler. The propagation of shear waves was tracked in a phantom and used to characterize its stiffness. 3-D Ultrafast Doppler was used to obtain 3-D maps of Pulsed Doppler, Color Doppler, and Power Doppler quantities in a single acquisition and revealed, for the first time, the complex 3-D flow patterns occurring in the ventricles of the human heart during an entire cardiac cycle, and the 3-D in vivo interaction of blood flow and wall motion during the pulse wave in the carotid at the bifurcation. This study demonstrates the potential of 3-D Ultrafast Ultrasound Imaging for the 3-D real-time mapping of stiffness, tissue motion, and flow in humans in vivo and promises new clinical applications of ultrasound with reduced intra- and inter-observer variability. PMID:25207828

  3. Experimental Investigation of Complex Dynamics of Plasma Turbulence and Transport

    NASA Astrophysics Data System (ADS)

    Gilmore, M.; Peebles, W. A.; Rhodes, T. L.; Newman, D. E.; Sanchez, R.

    2000-10-01

    Theoretical predictions of complex dynamics, such as self-organized criticality (SOC), have led to new insights into the behavior of a wide range of complex systems, such as sandpiles, evolution/extinction models and earthquake fault zones. Recently, complex dynamics have been invoked as a paradigm for understanding turbulent transport in plasmas. In particular, complex dynamical models of turbulent transport make specific predictions regarding power spectra and long range spatial and temporal correlations. In order to test the models experimentally, detailed studies utilizing probe arrays at many axial and azimuthal positions are under way in the linear Large Plasma Device at UCLA. Preliminary edge fluctuation data show frequency spectra with three distinct regions, scaling approximately as f^0, f-1, and f-4, in low, intermediate, and high frequency intervals respectively. The f-1 frequency interval decreases - eventually to zero - as the plasma is scanned from the edge to the core. These observations are consistent with a recently developed complex dynamics model that includes classical diffusion. *Supported by the National Science Foundation

  4. 3D Depositional Model in a Complex Incised Valley Fill: An Example from the Late Messinian Abu Madi Formation, Nile Delta Basin, Egypt

    NASA Astrophysics Data System (ADS)

    Nasr El-Deen Badawy, A. M. E. S.

    2015-12-01

    The study area lies in the Central Marine Delta, which is located in the Baltim offshore concession, about 25 kms from the shoreline and 40 kms North Abu Madi-El Qara fields. The current study is aiming to give a comprehensive combined and conjugated study between well data and seismic survey interpretations. The former includes well logging data, acquired results of actual drilling and biostratigraphic study, to give an integrated picture for the considered area in a true attempt to visualize the geological and geophysical data given from both wells and seismic reflection surveys, and hence introduce an updated sequence stratigraphic framework for the Messinian sequence at the offshore Nile Delta area. The 3D geological model, based on all the available well data (faunal contents, litho-facies, log signatures…...etc.) and the seismic expressions (facies and geometry), has been constructed for the study area. This model shows that, the study area was changed from shelf (considered as erosional), to delta channels and then directed to the north. It changed to delta front mouth bars on the shoreface and affected by the main Rosetta fault to collect deposits as sand bars in the southern part on the downthrown side of the fault. Most deposits on this face were highstand system tracts. This deduced from the sequence stratigraphy study. The area was then sloped to the north, as shelf slope with the deposition of slumps, which was formed during erosions and mass flows. Some mud diapers also formed upon this slope. After dropping the sea level with the activity of some syn-sedimentary faults, some channels with sediment supply started their activities to dig their ways to the north.

  5. Impossible expectations: fMRI adaptation in the lateral occipital complex (LOC) is modulated by the statistical regularities of 3D structural information.

    PubMed

    Freud, Erez; Ganel, Tzvi; Avidan, Galia

    2015-11-15

    fMRI adaptation (fMRIa), the attenuation of fMRI signal which follows repeated presentation of a stimulus, is a well-documented phenomenon. Yet, the underlying neural mechanisms supporting this effect are not fully understood. Recently, short-term perceptual expectations, induced by specific experimental settings, were shown to play an important modulating role in fMRIa. Here we examined the role of long-term expectations, based on 3D structural statistical regularities, in the modulation of fMRIa. To this end, human participants underwent fMRI scanning while performing a same-different task on pairs of possible (regular, expected) objects and spatially impossible (irregular, unexpected) objects. We hypothesized that given the spatial irregularity of impossible objects in relation to real-world visual experience, the visual system would always generate a prediction which is biased to the possible version of the objects. Consistently, fMRIa effects in the lateral occipital cortex (LOC) were found for possible, but not for impossible objects. Additionally, in alternating trials the order of stimulus presentation modulated LOC activity. That is, reduced activation was observed in trials in which the impossible version of the object served as the prime object (i.e. first object) and was followed by the possible version compared to the reverse order. These results were also supported by the behavioral advantage observed for trials that were primed by possible objects. Together, these findings strongly emphasize the importance of perceptual expectations in object representation and provide novel evidence for the role of real-world statistical regularities in eliciting fMRIa. PMID:26254586

  6. A Late Paleozoic sill complex and related paleo-topography in the eastern North Sea analyzed using 3D seismic data

    NASA Astrophysics Data System (ADS)

    Clausen, Ole Rønø; Andresen, Katrine Juul; Rasmussen, Jens Andreas

    2016-04-01

    In this paper, we utilize large igneous intrusions as a key to a detailed analysis and understanding of the late Paleozoic evolution of the Ringkøbing-Fyn High, an important structural element in the North West European Craton. The study takes advantage of high-quality 3D seismic data and boreholes to map the geometry and lateral distribution of intrusive sills cross-cutting the sedimentary strata at a low angle (transgressive sills). Our analysis shows that the transgressive sills most likely sourced the vast extrusion of volcanics, which covered most of the Early Permian Northern Basin and which is associated to the Skagerak-Centered Large Igneous Province (SCLIP). Furthermore, a geometrical analysis of the sills demonstrates that the magmatic source for the sills was located SE of the studied area, suggesting a correlation with geophysically inferred lower crust intrusions. Hence, we are in this study able to constrain the full magmatic system from the lower crust intrusions to the surface volcanics. Intrusion of the sills occurred prior to an Early Permian faulting event, which created rotated fault blocks outlining the present Ringkøbing-Fyn High. The sills exposed for erosion at the crest of the footwall in turn controlled the Late Permian paleo-topography and the distribution of the Zechstein evaporites due to the fact that they are harder to erode. Hence, we are able to demonstrate a topography controlled thickness variation of the Zechstein evaporites. The study furthermore emphasizes that an understanding of the deepest parts of the North Sea Basin is crucial when evaluating the potential for yet unrecognized hydrocarbon plays.

  7. Experimental and numerical investigation of non-neutral complex plasmas

    NASA Astrophysics Data System (ADS)

    Romé, M.; Cavaliere, F.; Cavenago, M.; Ikram, M.; Lepreti, F.; Maero, G.; Paroli, B.; Pozzoli, R.

    2013-03-01

    A plasma of particles with the same sign of charge, can be easily confined under ultra-high vacuum conditions in Penning-Malmberg traps, where the time evolution of the system is monitored for very long times by means of electrostatic and optical diagnostic systems. Complex (dusty) plasmas are ionized gases that contain a distribution of micrometer-sized particles with a surface charge of the order of a few thousand electron charges. The interplay between a wide range of scales in time and space gives rise to new characteristic physical phenomena. Laboratory complex plasmas generally satisfy a global (quasi-)neutrality condition. A different concept is represented by a non-neutral complex plasma. To investigate the dynamics of this system, we are currently developing the DuEl (Dust-Electron) device, where negatively charged dust particles will be present together with a population of electrons. The experimental set-up will include a dust injection system and a Penning-Malmberg trap for the confinement of the dust-contaminated electron plasma. We describe here the main physical aims of the project and the present design of the apparatus. To support the experimental project, we have been developing a specifically tailored two-dimensional 'hybrid' Particle-In-Cell code. Using polar cylindrical coordinates, the code aims to investigate the transverse dynamics of a magnetized electron plasma contaminated by a massive, charged species. A mass-less fluid approximation for the electron population is exploited, while the dust component is treated with a kinetic description, also including the gravitational force. The preliminary results of systematic studies on the effects of heavy (magnetized or non-magnetized) dust grains on the equilibrium and stability properties of the electron fluid are presented. The implementation of other characteristic phenomena of interest, e.g. residual gas friction and dust charge fluctuations, is also under development.

  8. Dislocation dynamics during plastic deformations of complex plasma crystals.

    PubMed

    Durniak, C; Samsonov, D; Ralph, J F; Zhdanov, S; Morfill, G

    2013-11-01

    The internal structures of most periodic crystalline solids contain defects. This affects various important mechanical and thermal properties of crystals. Since it is very difficult and expensive to track the motion of individual atoms in real solids, macroscopic model systems, such as complex plasmas, are often used. Complex plasmas consist of micrometer-sized grains immersed into an ion-electron plasma. They exist in solidlike, liquidlike, and gaseouslike states and exhibit a range of nonlinear and dynamic effects, most of which have direct analogies in solids and liquids. Slabs of a monolayer hexagonal complex plasma were subjected to a cycle of uniaxial compression and decompression of large amplitudes to achieve plastic deformations, both in experiments and simulations. During the cycle, the internal structure of the lattice exhibited significant rearrangements. Dislocations (point defects) were generated and displaced in the stressed lattice. They tended to glide parallel to their Burgers vectors under load. It was found that the deformation cycle was macroscopically reversible but irreversible at the particle scale. PMID:24329366

  9. Dislocation dynamics during plastic deformations of complex plasma crystals

    NASA Astrophysics Data System (ADS)

    Durniak, C.; Samsonov, D.; Ralph, J. F.; Zhdanov, S.; Morfill, G.

    2013-11-01

    The internal structures of most periodic crystalline solids contain defects. This affects various important mechanical and thermal properties of crystals. Since it is very difficult and expensive to track the motion of individual atoms in real solids, macroscopic model systems, such as complex plasmas, are often used. Complex plasmas consist of micrometer-sized grains immersed into an ion-electron plasma. They exist in solidlike, liquidlike, and gaseouslike states and exhibit a range of nonlinear and dynamic effects, most of which have direct analogies in solids and liquids. Slabs of a monolayer hexagonal complex plasma were subjected to a cycle of uniaxial compress