Science.gov

Sample records for 3d coupled hydrodynamic

  1. A coupled wave-3-D hydrodynamics model of the Taranto Sea (Italy): a multiple-nesting approach

    NASA Astrophysics Data System (ADS)

    Gaeta, Maria Gabriella; Samaras, Achilleas G.; Federico, Ivan; Archetti, Renata; Maicu, Francesco; Lorenzetti, Giuliano

    2016-09-01

    The present work describes an operational strategy for the development of a multiscale modeling system, based on a multiple-nesting approach and open-source numerical models. The strategy was applied and validated for the Gulf of Taranto in southern Italy, scaling large-scale oceanographic model results to high-resolution coupled wave-3-D hydrodynamics simulations for the area of Mar Grande in the Taranto Sea. The spatial and temporal high-resolution simulations were performed using the open-source TELEMAC suite, forced by wind data from the COSMO-ME database, boundary wave spectra from the RON buoy at Crotone and results from the Southern Adriatic Northern Ionian coastal Forecasting System (SANIFS) regarding sea levels and current fields. Model validation was carried out using data collected in the Mar Grande basin from a fixed monitoring station and during an oceanographic campaign in October 2014. The overall agreement between measurements and model results in terms of waves, sea levels, surface currents, circulation patterns and vertical velocity profiles is deemed to be satisfactory, and the methodology followed in the process can constitute a useful tool for both research and operational applications in the same field and as support of decisions for management and design of infrastructures.

  2. Impact of urban effluents on summer hypoxia in the highly turbid Gironde Estuary, applying a 3D model coupling hydrodynamics, sediment transport and biogeochemical processes

    NASA Astrophysics Data System (ADS)

    Lajaunie-Salla, Katixa; Wild-Allen, Karen; Sottolichio, Aldo; Thouvenin, Bénédicte; Litrico, Xavier; Abril, Gwenaël

    2017-10-01

    Estuaries are increasingly degraded due to coastal urban development and are prone to hypoxia problems. The macro-tidal Gironde Estuary is characterized by a highly concentrated turbidity maximum zone (TMZ). Field observations show that hypoxia occurs in summer in the TMZ at low river flow and a few days after the spring tide peak. In situ data highlight lower dissolved oxygen (DO) concentrations around the city of Bordeaux, located in the upper estuary. Interactions between multiple factors limit the understanding of the processes controlling the dynamics of hypoxia. A 3D biogeochemical model was developed, coupled with hydrodynamics and a sediment transport model, to assess the contribution of the TMZ and the impact of urban effluents through wastewater treatment plants (WWTPs) and sewage overflows (SOs) on hypoxia. Our model describes the transport of solutes and suspended material and the biogeochemical mechanisms impacting oxygen: primary production, degradation of all organic matter (i.e. including phytoplankton respiration, degradation of river and urban watershed matter), nitrification and gas exchange. The composition and the degradation rates of each variable were characterized by in situ measurements and experimental data from the study area. The DO model was validated against observations in Bordeaux City. The simulated DO concentrations show good agreement with field observations and satisfactorily reproduce the seasonal and neap-spring time scale variations around the city of Bordeaux. Simulations show a spatial and temporal correlation between the formation of summer hypoxia and the location of the TMZ, with minimum DO centered in the vicinity of Bordeaux. To understand the contribution of the urban watershed forcing, different simulations with the presence or absence of urban effluents were compared. Our results show that in summer, a reduction of POC from SO would increase the DO minimum in the vicinity of Bordeaux by 3% of saturation. Omitting

  3. Implementation of a 3D Coupled Hydrodynamic and Contaminant Fate Model for PCDD/Fs in Thau Lagoon (France): The Importance of Atmospheric Sources of Contamination

    PubMed Central

    Dueri, Sibylle; Marinov, Dimitar; Fiandrino, Annie; Tronczyński, Jacek; Zaldívar, José-Manuel

    2010-01-01

    A 3D hydrodynamic and contaminant fate model was implemented for polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) in Thau lagoon. The hydrodynamic model was tested against temperature and salinity measurements, while the contaminant fate model was assessed against available data collected at different stations inside the lagoon. The model results allow an assessment of the spatial and temporal variability of the distribution of contaminants in the lagoon, the seasonality of loads and the role of atmospheric deposition for the input of PCDD/Fs. The outcome suggests that air is an important source of PCDD/Fs for this ecosystem, therefore the monitoring of air pollution is very appropriate for assessing the inputs of these contaminants. These results call for the development of integrated environmental protection policies. PMID:20617040

  4. Explicit 3-D Hydrodynamic FEM Program

    SciTech Connect

    2000-11-07

    DYNA3D is a nonlinear explicit finite element code for analyzing 3-D structures and solid continuum. The code is vectorized and available on several computer platforms. The element library includes continuum, shell, beam, truss and spring/damper elements to allow maximum flexibility in modeling physical problems. Many materials are available to represent a wide range of material behavior, including elasticity, plasticity, composites, thermal effects and rate dependence. In addition, DYNA3D has a sophisticated contact interface capability, including frictional sliding, single surface contact and automatic contact generation.

  5. 3D hydrodynamic focusing microfluidics for emerging sensing technologies.

    PubMed

    Daniele, Michael A; Boyd, Darryl A; Mott, David R; Ligler, Frances S

    2015-05-15

    While the physics behind laminar flows has been studied for 200 years, understanding of how to use parallel flows to augment the capabilities of microfluidic systems has been a subject of study primarily over the last decade. The use of one flow to focus another within a microfluidic channel has graduated from a two-dimensional to a three-dimensional process and the design principles are only now becoming established. This review explores the underlying principles for hydrodynamic focusing in three dimensions (3D) using miscible fluids and the application of these principles for creation of biosensors, separation of cells and particles for sample manipulation, and fabrication of materials that could be used for biosensors. Where sufficient information is available, the practicality of devices implementing fluid flows directed in 3D is evaluated and the advantages and limitations of 3D hydrodynamic focusing for the particular application are highlighted.

  6. 3-D HYDRODYNAMIC MODELING IN A GEOSPATIAL FRAMEWORK

    SciTech Connect

    Bollinger, J; Alfred Garrett, A; Larry Koffman, L; David Hayes, D

    2006-08-24

    3-D hydrodynamic models are used by the Savannah River National Laboratory (SRNL) to simulate the transport of thermal and radionuclide discharges in coastal estuary systems. Development of such models requires accurate bathymetry, coastline, and boundary condition data in conjunction with the ability to rapidly discretize model domains and interpolate the required geospatial data onto the domain. To facilitate rapid and accurate hydrodynamic model development, SRNL has developed a pre- and post-processor application in a geospatial framework to automate the creation of models using existing data. This automated capability allows development of very detailed models to maximize exploitation of available surface water radionuclide sample data and thermal imagery.

  7. 3D hydrodynamical and radiative transfer modeling of η Carinae's colliding winds

    NASA Astrophysics Data System (ADS)

    Madura, T. I.; Clementel, N.; Gull, T. R.; Kruip, C. J. H.; Paardekooper, J.-P.; Icke, V.

    We present results of full 3D hydrodynamical and radiative transfer simulations of the colliding stellar winds in the massive binary system η Carinae. We accomplish this by applying the SimpleX algorithm for 3D radiative transfer on an unstructured Voronoi-Delaunay grid to recent 3D smoothed particle hydrodynamics (SPH) simulations of the binary colliding winds. We use SimpleX to obtain detailed ionization fractions of hydrogen and helium, in 3D, at the resolution of the original SPH simulations. We investigate several computational domain sizes and Luminous Blue Variable primary star mass-loss rates. We furthermore present new methods of visualizing and interacting with output from complex 3D numerical simulations, including 3D interactive graphics and 3D printing. While we initially focus on η Car, the methods employed can be applied to numerous other colliding wind (WR 140, WR 137, WR 19) and dusty `pinwheel' (WR 104, WR 98a) binary systems. Coupled with 3D hydrodynamical simulations, SimpleX simulations have the potential to help determine the regions where various observed time-variable emission and absorption lines form in these unique objects.

  8. Parallelization of ICF3D, a Diffusion and Hydrodynamics Code

    NASA Astrophysics Data System (ADS)

    Shestakov, A. I.; Milovich, J. L.

    1997-11-01

    We describe the parallelization of the unstructured grid ICF3D code. The strategy divides physical space into a collection of disjoint subdomains, one per processing element (PE). The subdomains may be of arbitrary shape but, for efficiency, should have small surface-to-volume ratios. The strategy is ideally suited for distributed memory computers, but also works on shared memory architectures. The hydrodynamic module, which uses a cell-based algorithm using discontinuous finite elements, is parallelized by assigning cells to different PEs. This assignment is done by a separate program and constitutes input data for ICF3D. The diffusion module, a kernel of the heat conduction and radiation diffusion packages, advances continuous fields which are discretized using a nodal finite element method. This module is parallelized by assigning points to individual PEs. The assignment is done within ICF3D. The code is in C++. Special message passing objects (MPO) determine the connectivity of the subdomains and transfer data between them by calling MPI functions. Results are presented on a variety of computers: CRAY T3D and IBM SP2 at Livermore, and Intel's ASCI RED at Sandia, Albuquerque.

  9. 3D hydrodynamic simulations of carbon burning in massive stars

    NASA Astrophysics Data System (ADS)

    Cristini, A.; Meakin, C.; Hirschi, R.; Arnett, D.; Georgy, C.; Viallet, M.; Walkington, I.

    2017-10-01

    We present the first detailed 3D hydrodynamic implicit large eddy simulations of turbulent convection of carbon burning in massive stars. Simulations begin with radial profiles mapped from a carbon-burning shell within a 15 M⊙ 1D stellar evolution model. We consider models with 1283, 2563, 5123, and 10243 zones. The turbulent flow properties of these carbon-burning simulations are very similar to the oxygen-burning case. We performed a mean field analysis of the kinetic energy budgets within the Reynolds-averaged Navier-Stokes framework. For the upper convective boundary region, we find that the numerical dissipation is insensitive to resolution for linear mesh resolutions above 512 grid points. For the stiffer, more stratified lower boundary, our highest resolution model still shows signs of decreasing sub-grid dissipation suggesting it is not yet numerically converged. We find that the widths of the upper and lower boundaries are roughly 30 per cent and 10 per cent of the local pressure scaleheights, respectively. The shape of the boundaries is significantly different from those used in stellar evolution models. As in past oxygen-shell-burning simulations, we observe entrainment at both boundaries in our carbon-shell-burning simulations. In the large Péclet number regime found in the advanced phases, the entrainment rate is roughly inversely proportional to the bulk Richardson number, RiB (∝RiB-α, 0.5 ≲ α ≲ 1.0). We thus suggest the use of RiB as a means to take into account the results of 3D hydrodynamics simulations in new 1D prescriptions of convective boundary mixing.

  10. 3D Hydrodynamical and Radiative Transfer Modeling of Eta Carinae's Colliding Winds

    NASA Astrophysics Data System (ADS)

    Madura, Thomas Ignatius; Clementel, Nicola; Gull, Theodore R.; Kruip, Chael J. H.; Paardekooper, Jan-Pieter; Icke, Vincent

    2015-08-01

    We present the results of full 3D hydrodynamical and radiative transfer simulations of the colliding stellar winds in the massive binary system Eta Carinae (Clementel, Madura, et al. 2014, MNRAS, 443, 2475 and Clementel, Madura, et al. 2015, MNRAS, 447, 2445). We accomplish this by applying the SimpleX algorithm for 3D radiative transfer on an unstructured Voronoi-Delaunay grid to 3D smoothed particle hydrodynamics simulations of the binary colliding winds. We use SimpleX to obtain detailed ionization fractions of hydrogen and helium in 3D. We investigate several computational domain sizes and Luminous Blue Variable primary-star mass-loss rates. We show how the SimpleX simulations can be used to generate synthetic spectral data cubes for comparison to data obtained with the Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph as part of a multi-cycle program to map changes in Eta Carinae's spatially extended interacting wind structures across one binary cycle. Comparison of the HST observations to the SimpleX models can help lead to more accurate constraints on the orbital, stellar, and wind parameters of the Eta Carinae system, such as the LBV primary's mass-loss rate and the companion star's temperature and luminosity. We furthermore present new methods of visualizing and interacting with output from complex 3D numerical simulations, including 3D interactive graphics and 3D printing (Madura et al. 2015, arXiv:1503.00716). While we initially focus specifically on Eta Carinae, the methods employed can be applied to numerous other colliding wind (WR 140, WR 137, WR 19) and dusty ‘pinwheel’ (WR 112, WR 104, WR 98a) binary systems. Coupled with 3D hydrodynamical simulations, SimpleX simulations have the potential to help determine the regions where dust can form and survive in these unique objects.

  11. Explicit 3D continuum fracture modeling with smooth particle hydrodynamics

    NASA Technical Reports Server (NTRS)

    Benz, W.; Asphaug, E.

    1993-01-01

    Impact phenomena shaped our solar system. As usual for most solar system processes, the scales are far different than we can address directly in the laboratory. Impact velocities are often much higher than we can achieve, sizes are often vastly larger, and most impacts take place in an environment where the only gravitational force is the mutual pull of the impactors. The Smooth Particle Hydrodynamics (SPH) technique has been applied in the past to the simulations of giant impacts. In these simulations, the colliding objects were so massive (at least a sizeable fraction of the Earth's mass) that material strength was negligible compared to gravity. This assumption can no longer be made when the bodies are much smaller. To this end, we have developed a 3D SPH code that includes a strength model to which we have added a von Mises yielding relation for stresses beyond the Hugoniot Elastic Limit. At the lower stresses associated with brittle failure, we use a rate-dependent strength based on the nucleation of incipient flaws whose number density is given by a Weibull distribution. Following Grady and Kipp and Melosh et al., we introduce a state variable D ('damage'), 0 less than D less than 1, which expresses the local reduction in strength due to crack growth under tensile loading. Unfortunately for the hydrodynamics, Grady and Kipp's model predicts which fragments are the most probable ones and not the ones that are really formed. This means, for example, that if a given laboratory experiment is modeled, the fragment distribution obtained from the Grady-Kipp theory would be equivalent to a ensemble average over many realizations of the experiment. On the other hand, the hydrodynamics itself is explicit and evolves not an ensemble average but very specific fragments. Hence, there is a clear incompatibility with the deterministic nature of the hydrodynamics equations and the statistical approach of the Grady-Kipp dynamical fracture model. We remedy these shortcomings

  12. Explicit 3D continuum fracture modeling with smooth particle hydrodynamics

    NASA Technical Reports Server (NTRS)

    Benz, W.; Asphaug, E.

    1993-01-01

    Impact phenomena shaped our solar system. As usual for most solar system processes, the scales are far different than we can address directly in the laboratory. Impact velocities are often much higher than we can achieve, sizes are often vastly larger, and most impacts take place in an environment where the only gravitational force is the mutual pull of the impactors. The Smooth Particle Hydrodynamics (SPH) technique has been applied in the past to the simulations of giant impacts. In these simulations, the colliding objects were so massive (at least a sizeable fraction of the Earth's mass) that material strength was negligible compared to gravity. This assumption can no longer be made when the bodies are much smaller. To this end, we have developed a 3D SPH code that includes a strength model to which we have added a von Mises yielding relation for stresses beyond the Hugoniot Elastic Limit. At the lower stresses associated with brittle failure, we use a rate-dependent strength based on the nucleation of incipient flaws whose number density is given by a Weibull distribution. Following Grady and Kipp and Melosh et al., we introduce a state variable D ('damage'), 0 less than D less than 1, which expresses the local reduction in strength due to crack growth under tensile loading. Unfortunately for the hydrodynamics, Grady and Kipp's model predicts which fragments are the most probable ones and not the ones that are really formed. This means, for example, that if a given laboratory experiment is modeled, the fragment distribution obtained from the Grady-Kipp theory would be equivalent to a ensemble average over many realizations of the experiment. On the other hand, the hydrodynamics itself is explicit and evolves not an ensemble average but very specific fragments. Hence, there is a clear incompatibility with the deterministic nature of the hydrodynamics equations and the statistical approach of the Grady-Kipp dynamical fracture model. We remedy these shortcomings

  13. Photospheric Emission from Collapsar Jets in 3D Relativistic Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Ito, Hirotaka; Matsumoto, Jin; Nagataki, Shigehiro; Warren, Donald C.; Barkov, Maxim V.

    2015-12-01

    We explore the photospheric emission from a relativistic jet breaking out from a massive stellar envelope based on relativistic hydrodynamical simulations and post-process radiation transfer calculations in three dimensions. To investigate the impact of three-dimensional (3D) dynamics on the emission, two models of injection conditions are considered for the jet at the center of the progenitor star: one with periodic precession and another without precession. We show that structures developed within the jet due to the interaction with the stellar envelope, as well as due to the precession, have a significant imprint on the resulting emission. Particularly, we find that the signature of precession activity by the central engine is not smeared out and can be directly observed in the light curve as a periodic signal. We also show that non-thermal features, which can account for observations of gamma-ray bursts, are produced in the resulting spectra even though only thermal photons are injected initially and the effect of non-thermal particles is not considered.

  14. Parton shower evolution in a 3D hydrodynamical medium

    SciTech Connect

    Renk, Thorsten

    2008-09-15

    We present a Monte Carlo simulation of the perturbative quantum chromodynamics shower developing after a hard process embedded in a heavy-ion collision. The main assumption is that the cascade of branching partons traverses a medium that (consistent with standard radiative energy loss pictures) is characterized by a local transport coefficient q-circumflex that measures the virtuality per unit length transferred to a parton that propagates in this medium. This increase in parton virtuality alters the development of the shower and in essence leads to extra induced radiation and hence a softening of the momentum distribution in the shower. After hadronization, this leads to the concept of a medium-modified fragmentation function. On the level of observables, this is manifest as the suppression of high-transverse-momentum (P{sub T}) hadron spectra. We simulate the soft medium created in heavy-ion collisions by a 3D hydrodynamical evolution and average the medium-modified fragmentation function over this evolution to compare with data on single inclusive hadron suppression and extract the q-circumflex that characterizes the medium. Finally, we discuss possible uncertainties of the model formulation and argue that the data in a soft momentum show evidence of qualitatively different physics that presumably cannot be described by a medium-modified parton shower.

  15. PHOTOSPHERIC EMISSION FROM COLLAPSAR JETS IN 3D RELATIVISTIC HYDRODYNAMICS

    SciTech Connect

    Ito, Hirotaka; Matsumoto, Jin; Nagataki, Shigehiro; Warren, Donald C.; Barkov, Maxim V.

    2015-12-01

    We explore the photospheric emission from a relativistic jet breaking out from a massive stellar envelope based on relativistic hydrodynamical simulations and post-process radiation transfer calculations in three dimensions. To investigate the impact of three-dimensional (3D) dynamics on the emission, two models of injection conditions are considered for the jet at the center of the progenitor star: one with periodic precession and another without precession. We show that structures developed within the jet due to the interaction with the stellar envelope, as well as due to the precession, have a significant imprint on the resulting emission. Particularly, we find that the signature of precession activity by the central engine is not smeared out and can be directly observed in the light curve as a periodic signal. We also show that non-thermal features, which can account for observations of gamma-ray bursts, are produced in the resulting spectra even though only thermal photons are injected initially and the effect of non-thermal particles is not considered.

  16. 3D Continuum-Particle Simulations for Multiscale Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Wijesinghe, Sanith; Hornung, Richard; Garcia, Alejandro; Hadjiconstantinou, Nicolas

    2001-06-01

    An adaptive mesh and algorithmic refinement (AMAR) scheme to model multi-scale, continuum-particle hydrodynamic flows is presented. AMAR ensures the particle description is applied exclusively in regions with high flow gradients and discontinous material interfaces, i.e. regions where the continuum flow assumptions are typically invalid. Direct Simulation Monte Carlo (DSMC) is used to model the particle regions on the finest grid of the adaptive hierarchy. The continuum flow is modelled using the compressible flow Euler equations and is solved using a second order Godunov scheme. Coupling is achieved by conservation of fluxes across the continuum-particle grid boundaries. The AMAR data structures are supported by a C++ object oriented framework (Structured Adaptive Mesh Refinement Application Infrastructure - SAMRAI) which allows for efficient parallel implementation. The scheme also extends to simulations of gas mixtures. Results for test cases are compared with theory and experiment.

  17. Salinity and eutrophication management by in situ continuous real-time monitoring and 3D modelling (hydrodynamics coupled with water quality): the case of the Berre lagoon (Mediterranean, France)

    NASA Astrophysics Data System (ADS)

    Martin, Laurent; Emma, Gouze

    2010-05-01

    . Since 2008, these three buoys have been also equipped with nitrate, chlorophyll and oxygen probes. Thanks to these measurements, a 3D hydrodynamic model (TELEMAC©) has been developped and validated to better qualify and quantify the relationships between the salinity of the lagoon, the fresh water inputs (from the powerplant and from the rivers), the water exchanges through the Caronte channel and the wind mixing. This model is currently used by the electricity producer to manage fresh water discharges complying with salinity indicators fixed by the European Court of Justice. Then, a biogeochemical model (DelWAQ©) coupled with the hydrodynamic model has been developped to understand the ecosystem functioning and to assess the hydroelectric powerplant implication in the eutrophication of the lagoon. Simulations reproduce quite well: 1/ the seasonal variations of nutrients, 2/ biogeochemical processes, 3/ anoxia events in connection with stratification periods at deep stations and 4/ are able to calculate nutrients budgets over a year. The results show that high primary production rates are based on high dynamical mineralization processes. The allochtonous nutrients sources are not sufficient to feed the phytoplanktonic demand (less than 1%). This models coupling is the only way to compile the physical and biogeochemical variables and processes. It's a tool aiming at a better assessment of the high complexity of the lagoon nutrients cycles. It will help us to understand the powerplant implication for the eutrophication with respect to the anthropised rivers. Moreover we would be able to test various managing scenarii (e.g. drop of nutrients loads) and to suggest new rehabilitation strategies.

  18. Constructing stable 3D hydrodynamical models of giant stars

    NASA Astrophysics Data System (ADS)

    Ohlmann, Sebastian T.; Röpke, Friedrich K.; Pakmor, Rüdiger; Springel, Volker

    2017-02-01

    Hydrodynamical simulations of stellar interactions require stable models of stars as initial conditions. Such initial models, however, are difficult to construct for giant stars because of the wide range in spatial scales of the hydrostatic equilibrium and in dynamical timescales between the core and the envelope of the giant. They are needed for, e.g., modeling the common envelope phase where a giant envelope encompasses both the giant core and a companion star. Here, we present a new method of approximating and reconstructing giant profiles from a stellar evolution code to produce stable models for multi-dimensional hydrodynamical simulations. We determine typical stellar stratification profiles with the one-dimensional stellar evolution code mesa. After an appropriate mapping, hydrodynamical simulations are conducted using the moving-mesh code arepo. The giant profiles are approximated by replacing the core of the giant with a point mass and by constructing a suitable continuation of the profile to the center. Different reconstruction methods are tested that can specifically control the convective behaviour of the model. After mapping to a grid, a relaxation procedure that includes damping of spurious velocities yields stable models in three-dimensional hydrodynamical simulations. Initially convectively stable configurations lead to stable hydrodynamical models while for stratifications that are convectively unstable in the stellar evolution code, simulations recover the convective behaviour of the initial model and show large convective plumes with Mach numbers up to 0.8. Examples are shown for a 2 M⊙ red giant and a 0.67 M⊙ asymptotic giant branch star. A detailed analysis shows that the improved method reliably provides stable models of giant envelopes that can be used as initial conditions for subsequent hydrodynamical simulations of stellar interactions involving giant stars.

  19. 3D Kinematics and Hydrodynamic Analysis of Freely Swimming Cetacean

    NASA Astrophysics Data System (ADS)

    Ren, Yan; Sheinberg, Dustin; Liu, Geng; Dong, Haibo; Fish, Frank; Javed, Joveria

    2015-11-01

    It's widely thought that flexibility and the ability to control flexibility are crucial elements in determining the performance of animal swimming. However, there is a lack of quantification of both span-wise and chord-wise deformation of Cetacean's flukes and associated hydrodynamic performance during actively swimming. To fill this gap, we examined the motion and flexure of both dolphin fluke and orca fluke in steady swimming using a combined experimental and computational approach. It is found that the fluke surface morphing can effectively modulate the flow structures and influence the propulsive performance. Findings from this work are fundamental for understanding key kinematic features of effective Cetacean propulsors, and for quantifying the hydrodynamic force production that naturally occurs during different types of swimming. This work is supported by ONR MURI N00014-14-1-0533 and NSF CBET-1313217.

  20. A 3D Hydrodynamic Model for Cytokinesis of Eukaryotic Cells

    DTIC Science & Technology

    2014-08-01

    goes wrong may lead to a catastrophe or failure, which may lead to an unwelcome outcome for instance cancer . Thus, a detailed understanding on... biofilm - drug interaction. Discrete and Continuous Dynamical Systems Series B, 15:417–456, March 2011. 13 [17] Brandon Lindley, Qi Wang, and Tianyu Zhang...Multicomponent hydrodynamic model for heterogeneous biofilms : Two-dimensional numerical simulations of growth and in- teraction with flows. Physical

  1. Application of 3D hydrodynamic and particle tracking models for better environmental management of finfish culture

    NASA Astrophysics Data System (ADS)

    Moreno Navas, Juan; Telfer, Trevor C.; Ross, Lindsay G.

    2011-04-01

    Hydrographic conditions, and particularly current speeds, have a strong influence on the management of fish cage culture. These hydrodynamic conditions can be used to predict particle movement within the water column and the results used to optimise environmental conditions for effective site selection, setting of environmental quality standards, waste dispersion, and potential disease transfer. To this end, a 3D hydrodynamic model, MOHID, has been coupled to a particle tracking model to study the effects of mean current speed, quiescent water periods and bulk water circulation in Mulroy Bay, Co. Donegal Ireland, an Irish fjard (shallow fjordic system) important to the aquaculture industry. A Lagangrian method simulated the instantaneous release of "particles" emulating discharge from finfish cages to show the behaviour of waste in terms of water circulation and water exchange. The 3D spatial models were used to identify areas of mixed and stratified water using a version of the Simpson-Hunter criteria, and to use this in conjunction with models of current flow for appropriate site selection for salmon aquaculture. The modelled outcomes for stratification were in good agreement with the direct measurements of water column stratification based on observed density profiles. Calculations of the Simpson-Hunter tidal parameter indicated that most of Mulroy Bay was potentially stratified with a well mixed region over the shallow channels where the water is faster flowing. The fjard was characterised by areas of both very low and high mean current speeds, with some areas having long periods of quiescent water. The residual current and the particle tracking animations created through the models revealed an anticlockwise eddy that may influence waste dispersion and potential for disease transfer, among salmon cages and which ensures that the retention time of waste substances from cages is extended. The hydrodynamic model results were incorporated into the ArcView TM GIS

  2. 3D Hydrodynamic Simulation of Classical Novae Explosions

    NASA Astrophysics Data System (ADS)

    Kendrick, Coleman J.

    2015-01-01

    This project investigates the formation and lifecycle of classical novae and determines how parameters such as: white dwarf mass, star mass and separation affect the evolution of the rotating binary system. These parameters affect the accretion rate, frequency of the nova explosions and light curves. Each particle in the simulation represents a volume of hydrogen gas and are initialized randomly in the outer shell of the companion star. The forces on each particle include: gravity, centrifugal, coriolis, friction, and Langevin. The friction and Langevin forces are used to model the viscosity and internal pressure of the gas. A velocity Verlet method with a one second time step is used to compute velocities and positions of the particles. A new particle recycling method was developed which was critical for computing an accurate and stable accretion rate and keeping the particle count reasonable. I used C++ and OpenCL to create my simulations and ran them on two Nvidia GTX580s. My simulations used up to 1 million particles and required up to 10 hours to complete. My simulation results for novae U Scorpii and DD Circinus are consistent with professional hydrodynamic simulations and observed experimental data (light curves and outburst frequencies). When the white dwarf mass is increased, the time between explosions decreases dramatically. My model was used to make the first prediction for the next outburst of nova DD Circinus. My simulations also show that the companion star blocks the expanding gas shell leading to an asymmetrical expanding shell.

  3. Experimental investigation of high mach number 3D hydrodynamic jets at the National Ignition Facility

    SciTech Connect

    Blue, B E; Weber, S; Glendinning, S; Lanier, N; Woods, D; Bono, M; Dixit, S; Haynam, C; Holder, J; Kalantar, D; MacGowan, B; Nikitin, A; Rekow, V; Van Wonterghem, B; Moses, E; Stry, P; Wilde, B; Hsing, W; Robey, H

    2004-09-24

    The first hydrodynamics experiments were performed on the National Ignition Facility. A supersonic jet was formed via the interaction of a laser driven shock ({approx}40 Mbars) with 2D and 3D density perturbations. The temporal evolution of the jet's spatial scales and ejected mass were measured with point projection x-ray radiography. Measurements of the large-scale features and mass are in good agreement with 2D and 3D numerical simulations. These experiments are the first quantitative measurements of the evolution of 3D supersonic jets and provide insight into their 3D behavior.

  4. Gravitational wave signals from 3D neutrino hydrodynamics simulations of core-collapse supernovae

    NASA Astrophysics Data System (ADS)

    Andresen, H.; Müller, B.; Müller, E.; Janka, H.-Th.

    2017-06-01

    We present gravitational wave (GW) signal predictions from four 3D multigroup neutrino hydrodynamics simulations of core-collapse supernovae of progenitors with 11.2, 20 and 27 M⊙. GW emission in the pre-explosion phase strongly depends on whether the post-shock flow is dominated by the standing accretion shock instability (SASI) or convection and differs considerably from 2D models. SASI activity produces a strong signal component below 250 Hz through asymmetric mass motions in the gain layer and a non-resonant coupling to the proto-neutron star (PNS). Both convection- and SASI-dominated models show GW emission above 250 Hz, but with considerably lower amplitudes than in 2D. This is due to a different excitation mechanism for high-frequency l = 2 motions in the PNS surface, which are predominantly excited by PNS convection in 3D. Resonant excitation of high-frequency surface g modes in 3D by mass motions in the gain layer is suppressed compared to 2D because of smaller downflow velocities and a lack of high-frequency variability in the downflows. In the exploding 20 M⊙ model, shock revival results in enhanced low-frequency emission due to a change of the preferred scale of the convective eddies in the PNS convection zone. Estimates of the expected excess power in two frequency bands suggest that second-generation detectors will only be able to detect very nearby events, but that third-generation detectors could distinguish SASI- and convection-dominated models at distances of ˜ 10 kpc.

  5. Monolithic cell counter based on 3D hydrodynamic focusing in microfluidic channels

    NASA Astrophysics Data System (ADS)

    Paiè, Petra; Bragheri, Francesca; Osellame, Roberto

    2014-03-01

    Hydrodynamic focusing is a powerful technique frequently used in microfluidics that presents a wide range of applications since it allows focusing the sample flowing in the device to a narrow region in the center of the microchannel. In fact thanks to the laminarity of the fluxes in microchannels it is possible to confine the sample solution with a low flow rate by using a sheath flow with a higher flow rate. This in turn allows the flowing of one sample element at a time in the detection region, thus enabling analysis on single particles. Femtosecond laser micromachining is ideally suited to fabricate device integrating full hydrodynamic focusing functionalities thanks to the intrinsic 3D nature of this technique, especially if compared to expensive and complicated lithographic multi-step fabrication processes. Furthermore, because of the possibility to fabricate optical waveguides with the same technology, it is possible to obtain compact optofluidic devices to perform optical analysis of the sample even at the single cell level, as is the case for optical cell stretchers and sorters. In this work we show the fabrication and the fluidic characterization of extremely compact devices having only two inlets for 2D (both in vertical and horizontal planes) as well as full 3D symmetric hydrodynamic focusing. In addition we prove one of the possible application of the hydrodynamic focusing module, by fabricating and validating (both with polystyrene beads and erythrocytes) a monolithic cell counter obtained by integrating optical waveguides in the 3D hydrodynamic focusing device.

  6. Recent Hydrodynamics Improvements to the RELAP5-3D Code

    SciTech Connect

    Richard A. Riemke; Cliff B. Davis; Richard.R. Schultz

    2009-07-01

    The hydrodynamics section of the RELAP5-3D computer program has been recently improved. Changes were made as follows: (1) improved turbine model, (2) spray model for the pressurizer model, (3) feedwater heater model, (4) radiological transport model, (5) improved pump model, and (6) compressor model.

  7. Wind forcing of upland lake hydrodynamics: implementation and validation of a 3D numerical model

    NASA Astrophysics Data System (ADS)

    Morales, L.; French, J.; Burningham, H.; Evans, C.; Battarbee, R.

    2010-12-01

    Upland lakes act as important archives of environmental change, yet inferences based on the analysis of sediment cores are frequently compromised by an incomplete understanding of the hydrodynamic processes controlling the distribution and completeness of lake sediment sequences and their linkages to wider environmental factors. Many upland lakes are characterized by complex vertical and horizontal circulation patterns induced by the action of wind on the water surface. Wind forcing is important not only for the resuspension of bottom sediments in shallow marginal areas, but may also control the broader distribution of sediment accumulation. The work presented here represents the first stage of a project aimed at elucidating the linkages between wind forcing and the distribution of bottom sediments in upland lakes and the extent to which simple 'sediment focusing' models provide an adequate basis for predicting optimal locations for the acquisition of core samples for palaeolimnological analysis. As a first step, a 3D numerical hydrodynamic model is implemented for Llyn Conwy, a small oligotrophic upland lake in North Wales, UK. This utilises the community ocean model, FVCOM, that solves the Navier-Stokes equations in 3D on an unstructured triangular mesh using the finite volume method. A new graphical user interface has been developed for FVCOM to facilitate pre- and post-processing of lake modelling problems. At Llyn Conwy, the model is forced using local meteorological data and validated against vertical temperature profiles recorded by a long-term buoy deployment and short-term observations of vertical current structure measured using an upward-looking acoustic doppler profiler and surface circulation obtained from GPS drifters. Challenges in the application of FVCOM to a small lake include the design of a mesh that ensures numerical stability whilst resolving a complex bathymetry, and the need for careful treatment of model 'spin-up'. Once calibrated, the

  8. Straightforward 3D hydrodynamic focusing in femtosecond laser fabricated microfluidic channels.

    PubMed

    Paiè, Petra; Bragheri, Francesca; Vazquez, Rebeca Martinez; Osellame, Roberto

    2014-06-07

    We report on the use of femtosecond laser irradiation followed by chemical etching as a microfabrication tool for innovative microfluidic networks that implement hydrodynamic focusing. The capability of our microfabrication technology to interconnect microchannels in three dimensions was exploited to demonstrate 2D hydrodynamic focusing, either in the horizontal or in the vertical plane, and full 3D hydrodynamic focusing. In all cases only two inlets were required, one for the sample and one for the sheath flows. Fluidic characterization of all devices was provided. In addition, taking advantage of the possibility to write optical waveguides using the same technology, a monolithic cell counter based on 3D hydrodynamic focusing and integrated optical detection was validated. Counting rates up to 5000 cells s(-1) were achieved in this very compact device, where focusing and counting operations were implemented in less than 1 mm(3). Integration of this hydrodynamic focusing module into several devices fabricated by the same technology as optical cell stretchers and cell sorters is envisaged.

  9. New insights on pulsating white dwarfs from 3D radiation-hydrodynamical simulations

    NASA Astrophysics Data System (ADS)

    Tremblay, Pier-Emmanuel; Fontaine, Gilles; Ludwig, Hans-Günter; Gianninas, Alexandros; Kilic, Mukremin

    We have recently computed a grid of 3D radiation-hydrodynamical simulations for the atmosphere of pure-hydrogen DA white dwarfs in the range 5.0 < log g < 9.0. Our grid covers the full ZZ Ceti instability strip where pulsating DA white dwarfs are located. We have significantly improved the theoretical framework to study these objects by removing the free parameters of 1D convection, which were previously a major modeling hurdle. We present improved atmospheric parameter determinations based on spectroscopic fits with 3D model spectra, allowing for an updated definition of the empirical edges of the ZZ Ceti instability strip. Our 3D simulations also precisely predict the depth of the convection zones, narrowing down the internal layers where pulsation are being driven. We hope that these 3D effects will be included in asteroseismic models in the future to predict the region of the HR diagram where white dwarfs are expected to pulsate.

  10. 3D unstructured mesh ALE hydrodynamics with the upwind discontinuous galerkin method

    SciTech Connect

    Kershaw, D S; Milovich, J L; Prasad, M K; Shaw, M J; Shestakov, A I

    1999-05-07

    The authors describe a numerical scheme to solve 3D Arbitrary Lagrangian-Eulerian (ALE) hydrodynamics on an unstructured mesh using a discontinuous Galerkin method (DGM) and an explicit Runge-Kutta time discretization. Upwinding is achieved through Roe's linearized Riemann solver with the Harten-Hyman entropy fix. For stabilization, a 3D quadratic programming generalization of van Leer's 1D minmod slope limiter is used along with a Lapidus type artificial viscosity. This DGM scheme has been tested on a variety of hydrodynamic test problems and appears to be robust making it the basis for the integrated 3D inertial confinement fusion modeling code (ICF3D). For efficient code development, they use C++ object oriented programming to easily separate the complexities of an unstructured mesh from the basic physics modules. ICF3D is fully parallelized using domain decomposition and the MPI message passing library. It is fully portable. It runs on uniprocessor workstations and massively parallel platforms with distributed and shared memory.

  11. Description of a parallel, 3D, finite element, hydrodynamics-diffusion code

    SciTech Connect

    Milovich, J L; Prasad, M K; Shestakov, A I

    1999-04-11

    We describe a parallel, 3D, unstructured grid finite element, hydrodynamic diffusion code for inertial confinement fusion (ICF) applications and the ancillary software used to run it. The code system is divided into two entities, a controller and a stand-alone physics code. The code system may reside on different computers; the controller on the user's workstation and the physics code on a supercomputer. The physics code is composed of separate hydrodynamic, equation-of-state, laser energy deposition, heat conduction, and radiation transport packages and is parallelized for distributed memory architectures. For parallelization, a SPMD model is adopted; the domain is decomposed into a disjoint collection of subdomains, one per processing element (PE). The PEs communicate using MPI. The code is used to simulate the hydrodynamic implosion of a spherical bubble.

  12. Sub-micrometer-precision, three-dimensional (3D) hydrodynamic focusing via "microfluidic drifting".

    PubMed

    Nawaz, Ahmad Ahsan; Zhang, Xiangjun; Mao, Xiaole; Rufo, Joseph; Lin, Sz-Chin Steven; Guo, Feng; Zhao, Yanhui; Lapsley, Michael; Li, Peng; McCoy, J Philip; Levine, Stewart J; Huang, Tony Jun

    2014-01-21

    In this article, we demonstrate single-layered, "microfluidic drifting" based three-dimensional (3D) hydrodynamic focusing devices with particle/cell focal positioning approaching submicron precision along both lateral and vertical directions. By systematically optimizing channel geometries and sample/sheath flow rates, a series of "microfluidic drifting" based 3D hydrodynamic focusing devices with different curvature angles are designed and fabricated. Their performances are then evaluated using confocal microscopy, fast camera imaging, and side-view imaging techniques. Using a device with a curvature angle of 180°, we have achieved a standard deviation of ±0.45 μm in particle focal position and a coefficient of variation (CV) of 2.37% in flow cytometric measurements. To the best of our knowledge, this is the best CV that has been achieved using a microfluidic flow cytometry device. Moreover, the device showed the capability to distinguish 8 peaks when subjected to a stringent 8-peak rainbow calibration test, signifying the ability to perform sensitive, accurate tests similar to commercial flow cytometers. We have further tested and validated our device by detection of HEK-293 cells. With its advantages in simple fabrication (i.e., single-layered device), precise 3D hydrodynamic focusing (i.e., submicrometer precision along both lateral and vertical directions), and high detection resolution (i.e., low CV), our method could serve as an important basis for high-performance, mass-producible microfluidic flow cytometry.

  13. Hydrodynamic growth experiments with the 3-D, “native-roughness” modulations on NIF

    NASA Astrophysics Data System (ADS)

    Smalyuk, V. A.; Weber, S. V.; Casey, D.; Clark, D. S.; Coppari, F.; Field, J. E.; Haan, S. W.; Hammel, B. A.; Hamza, A.; Hsing, W.; Landen, O.; Nikroo, A.; Robey, H. F.; Weber, C. R.

    2016-05-01

    Hydrodynamic instability growth experiments with threedimensional (3-D) surface-roughness modulations were performed on plastic (CH) shell spherical implosions at the National Ignition Facility (NIF). The initial capsule outer-surface roughness was similar to the standard specifications (“native roughness”) used in a majority of implosions on NIF. At a convergence ratio of ∼3, the measured tent modulations were close to those predicted by 3-D simulations (within ∼15-20%), while measured 3-D, broadband modulations were ∼3-4 times larger than those simulated based on the growth of the known imposed initial surface modulations. One of the hypotheses to explain the results is based on the increased instability amplitudes due to modulations of the oxygen content in the bulk of the capsule. These new experiments results have prompted looking for ways to reduce UV light exposure during target fabrication.

  14. Magnetic diffusivities in 3D radiative chemo-hydrodynamic simulations of protostellar collapse

    NASA Astrophysics Data System (ADS)

    Dzyurkevich, Natalia; Commerçon, Benoît; Lesaffre, Pierre; Semenov, Dimitry

    2017-07-01

    Context. Both theory and observations of star-forming clouds require simulations that combine the co-evolving chemistry, magneto-hydrodynamics, and radiative transfer in protostellar collapse simulation. A detailed knowledge of self-consistent chemical evolution for the main charge carriers (both gas species and dust grains) allows us to correctly estimate the rate and nature of magnetic dissipation in the collapsing core. This knowledge is critical to answer one of the most significant issues of star and planet formation: what is the magnitude and spatial distribution of magnetic flux as the initial condition to protoplanetary disk evolution? Aims: We use a chemo-dynamical version of RAMSES, which is described in a companion publication, to follow the chemo-dynamical evolution of collapsing dense cores with various dust properties and interpret differences that occur in magnetic diffusivity terms. These differences are crucial to circumstellar disk formation. Methods: We performed 3D chemo-dynamical simulations of 1 M⊙ isolated dense core collapse for a range in dust size assumptions. The number density of dust and its mean size affect the efficiency of charge capturing and the formation of ices. The radiative hydrodynamics and dynamical evolution of chemical abundances were used to reconstruct the magnetic diffusivity terms for clouds with various magnetisation. Results: The simulations are performed for a mean dust size ranging from 0.017 μm to 1 μm, and we adopt both a fixed dust size and a dust size distribution. The chemical abundances for this range of dust sizes are produced by RAMSES and serve as inputs to calculations of Ohmic, ambipolar, and Hall diffusivity terms. Ohmic resistivity only plays a role at the late stage of the collapse in the innermost region of the cloud where gas density is in excess of a few times 1013 cm-3. Ambipolar diffusion is a dominant magnetic diffusivity term in cases where mean dust size is a typical ISM value or larger. We

  15. Hydrodynamic coupling between two fluid membranes.

    PubMed

    Ramachandran, Sanoop; Komura, Shigeyuki

    2011-02-23

    The coupled in-plane diffusion dynamics between point-particles embedded in stacked fluid membranes is investigated. We calculate the contributions to the coupling longitudinal and transverse diffusion coefficients due to particle motion within the different as well as the same membranes. The stacked geometry leads to a hydrodynamic coupling between the two membranes.

  16. Hydrodynamics and spatial zonation of the Capo Peloro coastal system (Sicily) through 3-D numerical modeling

    NASA Astrophysics Data System (ADS)

    Ferrarin, Christian; Bergamasco, Alessandro; Umgiesser, Georg; Cucco, Andrea

    2013-05-01

    Since advection and diffusion are the main physical processes that influence the cleaning capacity of coastal transitional waters, the 3-D spatial distribution of the water renewal times was used to delineate a physically-based zonation scheme. The temporal and spatial variations of the hydrodynamics are assessed using a validated three dimensional hydrodynamic finite element model. The developed methodology was applied to the Cape Peloro system, a coastal protected area located in the Messina Strait (Italy) consisting of two connected small brackish basins: the shallow Lake Ganzirri and the deep meromictic Lake Faro. The hydrodynamics of the two coastal lakes shows strong seasonal and spatial variation. The 3-D distribution of the water renewal times suggests a horizontal partition of the Lake Ganzirri into two sub-basins and a vertical zonation of the Lake Faro, with the mixolimnion extending till 10 m depth and the presence of a persistent bottom stagnant layer. The derived physically-based zonation scheme helps in explaining the highly heterogeneous spatial distribution of many biogeochemical variables in the Cape Peloro coastal system.

  17. Numerical 3D Hydrodynamics Study of Gravitational Instabilities in a Circumbinary Disk

    NASA Astrophysics Data System (ADS)

    Desai, Karna Mahadev; Steiman-Cameron, Thomas Y.; Michael, Scott; Cai, Kai; Durisen, Richard H.

    2016-01-01

    We present a 3D hydrodynamical study of gravitational instabilities (GIs) in a circumbinary protoplanetary disk around a Solar mass star and a brown dwarf companion (0.02 M⊙). GIs can play an important, and at times dominant, role in driving the structural evolution of protoplanetary disks. The reported simulations were performed employing CHYMERA, a radiative 3D hydrodynamics code developed by the Indiana University Hydrodynamics Group. The simulations include disk self-gravity and radiative cooling governed by realistic dust opacities. We examine the role of GIs in modulating the thermodynamic state of the disks, and determine the strengths of GI-induced density waves, non-axisymmetric density structures, radial mass transport, and gravitational torques. The principal goal of this study is to determine how the presence of the companion affects the nature and strength of GIs. Results are compared with a parallel simulation of a protoplanetary disk without the presence of the brown dwarf binary companion. We detect no fragmentation in either disk. A persistent vortex forms in the inner region of both disks. The vortex seems to be stabilized by the presence of the binary companion.

  18. Influence of a postural change of the swimmer's head in hydrodynamic performances using 3D CFD.

    PubMed

    Popa, Catalin Viorel; Arfaoui, Ahlem; Fohanno, Stéphane; Taïar, Redha; Polidori, Guillaume

    2014-01-01

    This study deals with recent researches undertaken by the authors in the field of hydrodynamics of human swimming. The aim of this numerical study was to investigate the flow around the entire swimmer's body. The results presented in this article focus on the combination of a 3D computational fluid dynamics code and the use of the k-ω turbulence model, in the range of Reynolds numbers representative of a swimming level varying from national to international competition. Emphasis is placed on the influence of a postural change of the swimmer's head in hydrodynamic performances, which is directly related to the reduction of overall drag. These results confirm and complete those, less accurate, of a preliminary 2D study recently published by the authors and allow the authors to optimise the swimmer's head position in underwater swimming.

  19. Three-dimensional (3D) hydrodynamic focusing for continuous sampling and analysis of adherent cells.

    PubMed

    Xu, Chunxiu; Wang, Min; Yin, Xuefeng

    2011-10-07

    A simple three-dimensional (3D) hydrodynamic focusing microfluidic device integrated with continuous sampling, rapid dynamic lysis, capillary electrophoretic (CE) separation and detection of intracellular content is presented. One of the major difficulties in microfluidic cell analysis for adherent cells is that the cells are prone to attaching to the channel surface. To solve this problem, a cross microfluidic chip with three sheath-flow channels located on both sides of and below the sampling channel was developed. With the three sheath flows around the sample solution-containing cells, the formed soft fluid wall prevents the cells from adhering to the channel surface. Labeled cells were 3D hydrodynamically focused by the sheath-flow streams and smoothly introduced into the cross-section one by one. The introduction of sheath-flow streams not only ensured single-cell sampling but avoided blockage of the sampling channel by adherent cells as well. The maximum rate for introduction of individual cells into the separation channel was about 151 cells min(-1). With electric field applied on the separation channel, the aligned cells were driven into the separation channel and rapidly lysed within 400 ms at the entry of the channel by sodium dodecylsulfate (SDS) added in the sheath-flow solution. The microfluidic system was evaluated by analysis of reduced glutathione (GSH) and reactive oxygen species (ROS) in single HepG2 cells. The average analysis throughput of ROS and GSH in single cells was 16-18 cells min(-1).

  20. A harmonic polynomial cell (HPC) method for 3D Laplace equation with application in marine hydrodynamics

    SciTech Connect

    Shao, Yan-Lin Faltinsen, Odd M.

    2014-10-01

    We propose a new efficient and accurate numerical method based on harmonic polynomials to solve boundary value problems governed by 3D Laplace equation. The computational domain is discretized by overlapping cells. Within each cell, the velocity potential is represented by the linear superposition of a complete set of harmonic polynomials, which are the elementary solutions of Laplace equation. By its definition, the method is named as Harmonic Polynomial Cell (HPC) method. The characteristics of the accuracy and efficiency of the HPC method are demonstrated by studying analytical cases. Comparisons will be made with some other existing boundary element based methods, e.g. Quadratic Boundary Element Method (QBEM) and the Fast Multipole Accelerated QBEM (FMA-QBEM) and a fourth order Finite Difference Method (FDM). To demonstrate the applications of the method, it is applied to some studies relevant for marine hydrodynamics. Sloshing in 3D rectangular tanks, a fully-nonlinear numerical wave tank, fully-nonlinear wave focusing on a semi-circular shoal, and the nonlinear wave diffraction of a bottom-mounted cylinder in regular waves are studied. The comparisons with the experimental results and other numerical results are all in satisfactory agreement, indicating that the present HPC method is a promising method in solving potential-flow problems. The underlying procedure of the HPC method could also be useful in other fields than marine hydrodynamics involved with solving Laplace equation.

  1. Delft3D-FLOW on PRACE infrastructures for real life hydrodynamic applications.

    NASA Astrophysics Data System (ADS)

    Donners, John; Genseberger, Menno; Jagers, Bert; de Goede, Erik; Mourits, Adri

    2013-04-01

    PRACE, the Partnership for Advanced Computing in Europe, offers access to the largest high-performance computing systems in Europe. PRACE invites and helps industry to increase their innovative potential through the use of the PRACE infrastructure. This poster describes different efforts to assist Deltares with porting the open-source simulation software Delft3D-FLOW to PRACE infrastructures. Analysis of the performance on these infrastructures has been done for real life flow applications. Delft3D-FLOW is a 2D and 3D shallow water solver which calculates non-steady flow and transport phenomena resulting from tidal and meteorological forcing on a curvilinear, boundary fitted grid in Cartesian or spherical coordinates. It also includes a module which sediment transport (both suspended and bed total load) and morphological changes for an arbitrary number of cohesive and non-cohesive fractions. As Delft3D-FLOW has been developed over several decades, with a variety of functionality and over 350k lines of source code, porting to PRACE infrastructures needs some effort. At the moment Delft3D-FLOW uses MPI with domain decomposition in one direction as its parallellisation approach. Because it is hard to identify scaling issues if one immediately starts with a complex case with many features enabled, different cases with increasing complexity have been used to investigate scaling of this parallellisation approach on several PRACE platforms. As a base reference case we started with a schematic high-resolution 2D hydrodynamic model of the river Waal that turned out to be surprisingly well-suited to the highly-parallel PRACE machines. Although Delft3D-FLOW employs a sophisticated build system, several modifications were required to port it to most PRACE systems due to the use of specific, highly-tuned compilers and MPI-libraries. After this we moved to a 3D hydrodynamic model of Rotterdam harbour that includes sections of the rivers Rhine and Meuse and a part of the North

  2. Solving 3D relativistic hydrodynamical problems with weighted essentially nonoscillatory discontinuous Galerkin methods

    NASA Astrophysics Data System (ADS)

    Bugner, Marcus; Dietrich, Tim; Bernuzzi, Sebastiano; Weyhausen, Andreas; Brügmann, Bernd

    2016-10-01

    Discontinuous Galerkin (DG) methods coupled to weighted essentially nonoscillatory (WENO) algorithms allow high order convergence for smooth problems and for the simulation of discontinuities and shocks. In this work, we investigate WENO-DG algorithms in the context of numerical general relativity, in particular for general relativistic hydrodynamics. We implement the standard WENO method at different orders, a compact (simple) WENO scheme, as well as an alternative subcell evolution algorithm. To evaluate the performance of the different numerical schemes, we study nonrelativistic, special relativistic, and general relativistic test beds. We present the first three-dimensional simulations of general relativistic hydrodynamics, albeit for a fixed spacetime background, within the framework of WENO-DG methods. The most important test bed is a single Tolman-Oppenheimer-Volkoff star in three dimensions, showing that long term stable simulations of single isolated neutron stars can be obtained with WENO-DG methods.

  3. Micro flow cytometer with self-aligned 3D hydrodynamic focusing

    PubMed Central

    Testa, Genni; Persichetti, Gianluca; Bernini, Romeo

    2014-01-01

    A micro flow cytometer with a single step 3D hydrodynamic flow focusing has been developed. The proposed design is capable to create a single-file particle stream that is self-aligned with an integrated optical fiber-based detection system, regardless of the flow rate ratio between the focusing and core liquids. The design approach provides the ability to adjust the stream size while keeping the position of the focused stream centered with respect to the focusing channel. The device has been fabricated by direct micro milling of PMMA sheets. Experimental validation of the hydrodynamic sheath focusing effect has been presented and sample stream with tuneable size from about 18 to 50 μm was measured. Flow cytometry measurements have been performed by using 10-23 μm fluorescent particles. From the analysis of the signals collected at each transit event we can confirm that the device was capable to align and measure microparticles with a good coefficient of variance. PMID:25657874

  4. Micro flow cytometer with self-aligned 3D hydrodynamic focusing.

    PubMed

    Testa, Genni; Persichetti, Gianluca; Bernini, Romeo

    2015-01-01

    A micro flow cytometer with a single step 3D hydrodynamic flow focusing has been developed. The proposed design is capable to create a single-file particle stream that is self-aligned with an integrated optical fiber-based detection system, regardless of the flow rate ratio between the focusing and core liquids. The design approach provides the ability to adjust the stream size while keeping the position of the focused stream centered with respect to the focusing channel. The device has been fabricated by direct micro milling of PMMA sheets. Experimental validation of the hydrodynamic sheath focusing effect has been presented and sample stream with tuneable size from about 18 to 50 μm was measured. Flow cytometry measurements have been performed by using 10-23 μm fluorescent particles. From the analysis of the signals collected at each transit event we can confirm that the device was capable to align and measure microparticles with a good coefficient of variance.

  5. New Insights on Pulsating White Dwarfs from 3D Radiation-Hydrodynamical Simulations

    NASA Astrophysics Data System (ADS)

    Tremblay, Pier-Emmanuel; Fontaine, Gilles; Ludwig, Hans-Günter

    2015-08-01

    We have recently computed a grid of 3D radiation-hydrodynamical simulations for the atmosphere of 70 pure-hydrogen DA white dwarfs in the range 7.0 < log g < 9.0. This includes the full ZZ Ceti instability strip where DA white dwarfs are pulsating, by far the most common type of degenerate pulsators. We have significantly improved the theoretical framework to study these objects by removing the free parameters of 1D convection, which were previously a major modeling hurdle. We will compare our new models with the observed sample of ZZ Ceti stars and highlight the improved derived properties of these objects. In particular, the new spectroscopically determined 3D atmospheric parameters allow for an improved definition of instability strip edges. We have also made new predictions for the size of convection zones, which significantly impact the position where the pulsations are driven, and the region of the HR diagram where white dwarfs are expected to pulsate. Finally, we will present new results from non-adiabatic pulsation calculations.

  6. Micro structured coupling elements for 3D silicon optical interposer

    NASA Astrophysics Data System (ADS)

    Charania, Sujay; Lüngen, Sebastian; Al-Husseini, Zaid; Killge, Sebastian; Nieweglowski, Krzysztof; Neumann, Niels; Plettemeier, Dirk; Bock, Karlheinz; Bartha, Johann W.

    2017-05-01

    Current trends in electronic industry, such as Internet of Things (IoT) and Cloud Computing call for high interconnect bandwidth, increased number of active devices and high IO count. Hence the integration of on silicon optical waveguides becomes an alternative approach to cope with the performance demands. The application and fabrication of horizontal (planar) and vertical (Through Silicon Vias - TSVs) optical waveguides are discussed here. Coupling elements are used to connect both waveguide structures. Two micro-structuring technologies for integration of coupling elements are investigated: μ-mirror fabrication by nanoimprint (i) and dicing technique (ii). Nanoimprint technology creates highly precise horizontal waveguides with polymer (refractive index nC = 1.56 at 650 nm) as core. The waveguide ends in reflecting facets aligned to the optical TSVs. To achieve Total Internal Reflection (TIR), SiO2 (nCl = 1.46) is used as cladding. TSVs (diameter 20-40μm in 200-380μm interposer) are realized by BOSCH process1, oxidation and SU-8 filling techniques. To carry out the imprint, first a silicon structure is etched using a special plasma etching process. A polymer stamp is then created from the silicon template. Using this polymer stamp, SU-8 is imprinted aligned to vertical TSVs over Si surface.Waveguide dicing is presented as a second technology to create coupling elements on polymer waveguides. The reflecting mirror is created by 45° V-shaped dicing blade. The goal of this work is to develop coupling elements to aid 3D optical interconnect network on silicon interposer, to facilitate the realization of the emerging technologies for the upcoming years.

  7. Single-layer planar on-chip flow cytometer using microfluidic drifting based three-dimensional (3D) hydrodynamic focusing.

    PubMed

    Mao, Xiaole; Lin, Sz-Chin Steven; Dong, Cheng; Huang, Tony Jun

    2009-06-07

    In this work, we demonstrate an on-chip microfluidic flow cytometry system based on a three-dimensional (3D) hydrodynamic focusing technique, microfluidic drifting. By inducing Dean flow in a curved microfluidic channel, microfluidic drifting can be used to hydrodynamically focus cells or particles in the vertical direction and enables the 3D hydrodynamic focusing in a single-layer planar microfluidic device. Through theoretical calculation, numerical simulation, and experimental characterization, we found that the microfluidic drifting technique can be effectively applied to three-dimensionally focus microparticles with density and size equivalent to those of human CD4+ T lymphocytes. In addition, we developed a flow cytometry platform by integrating the 3D focusing device with a laser-induced fluorescence (LIF) detection system. The system was shown to provide effective high-throughput flow cytometry measurements at a rate of greater than 1700 cells s(-1).

  8. 3D Printing Meets Computational Astrophysics: Deciphering the Structure of Eta Carinae’s Colliding Winds Using 3D Prints of Smoothed Particle Hydrodynamics Simulations

    NASA Astrophysics Data System (ADS)

    Madura, Thomas; Gull, Theodore R.; Clementel, Nicola; Paardekooper, Jan-Pieter; Kruip, Chael; Corcoran, Michael F.; Hamaguchi, Kenji; Teodoro, Mairan

    2015-01-01

    We present the first 3D prints of output from a supercomputer simulation of a complex astrophysical system, the colliding stellar winds in the massive (>120 MSun), highly eccentric (e ~ 0.9) binary Eta Carinae. Using a consumer-grade 3D printer (Makerbot Replicator 2X), we successfully printed 3D smoothed particle hydrodynamics simulations of Eta Carinae's inner (r ~110 AU) wind-wind collision interface at multiple orbital phases. These 3D prints reveal important, previously unknown 'finger-like' structures at orbital phases shortly after periastron (φ ~1.045) that protrude radially outward from the spiral wind-wind collision region. We speculate that these fingers are related to instabilities (e.g. Rayleigh-Taylor) that arise at the interface between the radiatively-cooled layer of dense post-shock primary-star wind and the hot, adiabatic post-shock companion-star wind. The success of our work and easy identification of previously unknown physical features highlight the important role 3D printing can play in the visualization and understanding of complex 3D time-dependent numerical simulations of astrophysical phenomena.

  9. High-resolution modelling of 3D hydrodynamics in coastal archipelagos

    NASA Astrophysics Data System (ADS)

    Miettunen, Elina; Tuomi, Laura; Ropponen, Janne; Lignell, Risto

    2016-04-01

    Dynamics of the coastal seas are affected by eutrophication, over-fishing, coastal construction and climate change. To enable the sustainable development of these areas, monitoring and modelling of the state of the sea are needed. The Archipelago Sea, located in the northern part of the semi-enclosed and brackish water Baltic Sea, is one of the most complex coastal areas with over 40 000 small islands and islets. It is also very vulnerable area already heavily stressed with eutrophication. Applicable modelling tools are needed to support the decision making and to provide sufficiently reliable information on the effects of the planned actions on the state of the coastal waters. We used 3D hydrodynamic model COHERENS to model the Archipelago Sea area with high spatial resolution of 0.25 nmi. Boundary conditions for this limited area were provided from coarser resolution, 2 nmi, Baltic Sea grid. In order to evaluate the performance of the high-resolution coastal model implementation a comprehensive measurement dataset was gathered, including hydrographic data from three intensive monitoring stations and several more rarely visited monitoring or research stations. The hydrodynamic model was able to simulate the surface temperature and salinity fields and their seasonal variation with good accuracy in this complex area. The sharp depth gradients typical for this area provided some challenges to the modelling. There was some over mixing and related to too strong vertical currents in the steep slopes of the deeper fault lines. Also the water exchange between the more open sea and coastal areas through narrow channels between the islands is not sufficiently well reproduced with the current resolution, leading to too high bottom temperatures.

  10. Linking 1D evolutionary to 3D hydrodynamical simulations of massive stars

    NASA Astrophysics Data System (ADS)

    Cristini, A.; Meakin, C.; Hirschi, R.; Arnett, D.; Georgy, C.; Viallet, M.

    2016-03-01

    Stellar evolution models of massive stars are important for many areas of astrophysics, for example nucleosynthesis yields, supernova progenitor models and understanding physics under extreme conditions. Turbulence occurs in stars primarily due to nuclear burning at different mass coordinates within the star. The understanding and correct treatment of turbulence and turbulent mixing at convective boundaries in stellar models has been studied for decades but still lacks a definitive solution. This paper presents initial results of a study on convective boundary mixing (CBM) in massive stars. The ‘stiffness’ of a convective boundary can be quantified using the bulk Richardson number ({{Ri}}{{B}}), the ratio of the potential energy for restoration of the boundary to the kinetic energy of turbulent eddies. A ‘stiff’ boundary ({{Ri}}{{B}}˜ {10}4) will suppress CBM, whereas in the opposite case a ‘soft’ boundary ({{Ri}}{{B}}˜ 10) will be more susceptible to CBM. One of the key results obtained so far is that lower convective boundaries (closer to the centre) of nuclear burning shells are ‘stiffer’ than the corresponding upper boundaries, implying limited CBM at lower shell boundaries. This is in agreement with 3D hydrodynamic simulations carried out by Meakin and Arnett (2007 Astrophys. J. 667 448-75). This result also has implications for new CBM prescriptions in massive stars as well as for nuclear burning flame front propagation in super-asymptotic giant branch stars and also the onset of novae.

  11. 3-D hydrodynamic modelling of flood impacts on a building and indoor flooding processes

    NASA Astrophysics Data System (ADS)

    Gems, Bernhard; Mazzorana, Bruno; Hofer, Thomas; Sturm, Michael; Gabl, Roman; Aufleger, Markus

    2016-06-01

    Given the current challenges in flood risk management and vulnerability assessment of buildings exposed to flood hazards, this study presents three-dimensional numerical modelling of torrential floods and its interaction with buildings. By means of a case study application, the FLOW-3D software is applied to the lower reach of the Rio Vallarsa torrent in the village of Laives (Italy). A single-family house on the flood plain is therefore considered in detail. It is exposed to a 300-year flood hydrograph. Different building representation scenarios, including an entire impervious building envelope and the assumption of fully permeable doors, light shafts and windows, are analysed. The modelling results give insight into the flooding process of the building's interior, the impacting hydrodynamic forces on the exterior and interior walls, and further, they quantify the impact of the flooding of a building on the flow field on the surrounding flood plain. The presented study contributes to the development of a comprehensive physics-based vulnerability assessment framework. For pure water floods, this study presents the possibilities and limits of advanced numerical modelling techniques within flood risk management and, thereby, the planning of local structural protection measures.

  12. Size-Controlled Fabrication of Polyaniline Microfibers Based on 3D Hydrodynamic Focusing Approach.

    PubMed

    Yoo, Imsung; Song, Simon; Uh, Kyungchan; Lee, Chan Woo; Kim, Jong-Man

    2015-07-01

    Owing to the relatively high conductivity and unique redox behavior, polyaniline (PANI) has been one of the most technologically promising conducting polymers. Although various methodologies have been developed, fabrication of PANI microfibers has been a challenging task owing to the poor solubility in most organic solvents. By taking advantage of a microfluidic technology and organic soluble acid labile t-Boc-protected PANI (t-Boc-PANI) as the conducting polymer precursor, fabrication of PANI microfibers in a size-controlled manner is possible. Introduction of a THF solution containing t-Boc-PANI, and dodecylbenzenesulfonic acid (DBSA) as a core flow, and water as a sheath flow into a microfluidic channel with a 3D hydrodynamic focusing effect results in crystallization of the polymer fiber. By changing the flow rate, linear PANI microfibers that range from 16.2 to 39.4 μm in diameter are readily obtained. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  13. Dynamic coupling of three hydrodynamic models

    NASA Astrophysics Data System (ADS)

    Hartnack, J. N.; Philip, G. T.; Rungoe, M.; Smith, G.; Johann, G.; Larsen, O.; Gregersen, J.; Butts, M. B.

    2008-12-01

    The need for integrated modelling is evidently present within the field of flood management and flood forecasting. Engineers, modellers and managers are faced with flood problems which transcend the classical hydrodynamic fields of urban, river and coastal flooding. Historically the modeller has been faced with having to select one hydrodynamic model to cover all the aspects of the potentially complex dynamics occurring in a flooding situation. Such a single hydrodynamic model does not cover all dynamics of flood modelling equally well. Thus the ideal choice may in fact be a combination of models. Models combining two numerical/hydrodynamic models are becoming more standard, typically these models combine a 1D river model with a 2D overland flow model or alternatively a 1D sewer/collection system model with a 2D overland solver. In complex coastal/urban areas the flood dynamics may include rivers/streams, collection/storm water systems along with the overland flow. The dynamics within all three areas is of the same time scale and there is feedback in the system across the couplings. These two aspects dictate a fully dynamic three way coupling as opposed to running the models sequentially. It will be shown that the main challenges of the three way coupling are time step issues related to the difference in numerical schemes used in the three model components and numerical instabilities caused by the linking of the model components. MIKE FLOOD combines the models MIKE 11, MIKE 21 and MOUSE into one modelling framework which makes it possible to couple any combination of river, urban and overland flow fully dynamically. The MIKE FLOOD framework will be presented with an overview of the coupling possibilities. The flood modelling concept will be illustrated through real life cases in Australia and in Germany. The real life cases reflect dynamics and interactions across all three model components which are not possible to reproduce using a two-way coupling alone. The

  14. A 3D unstructured grid nearshore hydrodynamic model based on the vortex force formalism

    NASA Astrophysics Data System (ADS)

    Zheng, Peng; Li, Ming; van der A, Dominic A.; van der Zanden, Joep; Wolf, Judith; Chen, Xueen; Wang, Caixia

    2017-08-01

    A new three-dimensional nearshore hydrodynamic model system is developed based on the unstructured-grid version of the third generation spectral wave model SWAN (Un-SWAN) coupled with the three-dimensional ocean circulation model FVCOM to enable the full representation of the wave-current interaction in the nearshore region. A new wave-current coupling scheme is developed by adopting the vortex-force (VF) scheme to represent the wave-current interaction. The GLS turbulence model is also modified to better reproduce wave-breaking enhanced turbulence, together with a roller transport model to account for the effect of surface wave roller. This new model system is validated first against a theoretical case of obliquely incident waves on a planar beach, and then applied to three test cases: a laboratory scale experiment of normal waves on a beach with a fixed breaker bar, a field experiment of oblique incident waves on a natural, sandy barred beach (Duck'94 experiment), and a laboratory study of normal-incident waves propagating around a shore-parallel breakwater. Overall, the model predictions agree well with the available measurements in these tests, illustrating the robustness and efficiency of the present model for very different spatial scales and hydrodynamic conditions. Sensitivity tests indicate the importance of roller effects and wave energy dissipation on the mean flow (undertow) profile over the depth. These tests further suggest to adopt a spatially varying value for roller effects across the beach. In addition, the parameter values in the GLS turbulence model should be spatially inhomogeneous, which leads to better prediction of the turbulent kinetic energy and an improved prediction of the undertow velocity profile.

  15. Excitation of anti-symmetric coupled spoof SPPs in 3D SIS waveguides based on coupling

    NASA Astrophysics Data System (ADS)

    Li-li, Tian; Yang, Chen; Jian-long, Liu; Kai, Guo; Ke-ya, Zhou; Yang, Gao; Shu-tian, Liu

    2016-07-01

    According to the electromagnetic field distributions, there exist two kinds of coupled spoof surface plasmon polaritons (SSPPs), the symmetric and anti-symmetric modes, in the three-dimensional (3D) subwavelength spoof-insulator-spoof (SIS) waveguide. We study the dispersion and excitation of the two kinds of coupled SSPPs supported by the 3D SIS waveguide. The evolution of the dispersion with the thickness and gap width of the waveguide is numerically investigated, and we give a theoretical analysis according to the coupling mechanism. Specially, based on the coupling mechanism, we design a zipper structure, through which the excitation and propagation of the anti-symmetric coupled modes can be realized effectively. Project supported by the National Basic Research Program of China (Grant No. 2013CBA01702) and the National Natural Science Foundation of China (Grant Nos. 61377016, 61575055, 10974039, 61307072, 61308017, and 61405056).

  16. Interface requirements to couple thermal-hydraulic codes to 3D neutronic codes

    SciTech Connect

    Langenbuch, S.; Austregesilo, H.; Velkov, K.

    1997-07-01

    The present situation of thermalhydraulics codes and 3D neutronics codes is briefly described and general considerations for coupling of these codes are discussed. Two different basic approaches of coupling are identified and their relative advantages and disadvantages are discussed. The implementation of the coupling for 3D neutronics codes in the system ATHLET is presented. Meanwhile, this interface is used for coupling three different 3D neutronics codes.

  17. 3D Hydrodynamical Calculations on the Fragmentation of Pancakes and Galaxy Formation

    NASA Astrophysics Data System (ADS)

    Umemura, Masayuki

    1992-05-01

    The fragmentation of pancakes is numerically investigated by 3D smoothed particle hydrodynamics combined with N-body scheme, where the thermal processes by the cooling and heating are explicitly included and the self-gravity is calculated by the direct summation for all particle pairs. We consider baryon-dominated and hot dark matter-dominated pancakes. We find that the fragmentation is triggered in a central cooled dense layer of a pancake, and it obeys a two-step scenario: first the pancake exhibits some filamentary structures after collapse, and then they are torn to numerous fragments, eventually forming chain-like structures. The galaxy formation efficiency in pancake fragmentation is considerably small as fGF ~ exp [-2(M_pan/10(14}M_sun)({1/5)) ]. This is suggestive when compared with the recent observations on X-ray clusters. It is also found that the typical sizes of fragments are proportional to the pancake mass, M_pan. The mass of fragment is determined as M_b ~ 0.3-2times 10(12) M_sun (M_pan/10(15) M_sun) in baryonic component. Moreover the rotation curve of each fragment is asymptotically flat in the outer envelope. Other characteristic quantities as the total mass to baryon mass ratios, the line-of-sight relative peculiar velocity dispersion of fragments, the neutral hydrogen column density of each fragment at the high-redshift epoch, and the intergalactic gas heating and X-ray luminosity are also presented. The fragmentation processes are strongly dependent upon small-scale fluctuations. Unless there is any small-scale seed fluctuations, the pancakes cannot be fragmented. Therefore, a pure neutrino-dominated universe where small-scale fluctuations are thoroughly erased may be unsuccessful in galaxy formation. We require just a small amount of fluctuations of smaller scales than a neutrino collisionless damping scale for the formation of galaxies in the fragmentation scenario.

  18. Review of solutions for 3D hydrodynamic modeling applied to aquaculture in South Pacific atoll lagoons.

    PubMed

    Andréfouët, S; Ouillon, S; Brinkman, R; Falter, J; Douillet, P; Wolk, F; Smith, R; Garen, P; Martinez, E; Laurent, V; Lo, C; Remoissenet, G; Scourzic, B; Gilbert, A; Deleersnijder, E; Steinberg, C; Choukroun, S; Buestel, D

    2006-10-01

    A workshop organized in French Polynesia in November 2004 allowed reviewing the current methods to model the three-dimensional hydrodynamic circulation in semi-enclosed atoll lagoons for aquaculture applications. Mollusk (e.g. pearl oyster, clam) aquaculture is a major source of income for South Pacific countries such as French Polynesia or Cook Islands. This aquaculture now requires a better understanding of circulation patterns to improve the spatial use of the lagoons, especially to define the best area to set larvae collectors. The pelagic larval duration of the relevant species (<20 days) and the size of the semi-closed lagoons (few hundreds of km2) drive the specifications of the model in terms of the spatial and temporal scale. It is considered that, in contrast with fish, mollusk larvae movements are limited and that their cycle occurs completely in the lagoon, without an oceanic stage. Atolls where aquaculture is productive are generally well-bounded, or semi-closed, without significant large and deep openings to the ocean. Nevertheless part of the lagoon circulation is driven by oceanic water inputs through the rim, ocean swells, tides and winds. Therefore, boundary conditions of the lagoon system are defined by the spatial structure of a very shallow rim (exposition and number of hoas), the deep ocean swell climate, tides and wind regimes. To obtain a realistic 3D numerical model of lagoon circulation with adequate forcing, it is thus necessary to connect in an interdisciplinary way a variety of methods (models, remote sensing and in situ data collection) to accurately represent the different components of the lagoon system and its specific boundary conditions. We review here the current methods and tools used to address these different components for a hypothetical atoll of the Tuamotu Archipelago (French Polynesia), representative of the semi-closed lagoons of the South Pacific Ocean. We hope this paper will serve as a guide for similar studies

  19. Introduction and guide to LLNL's relativistic 3-D nuclear hydrodynamics code

    SciTech Connect

    Zingman, J.A.; McAbee, T.L.; Alonso, C.T.; Wilson, J.R.

    1987-11-01

    We have constructed a relativistic hydrodynamic model to investigate Bevalac and higher energy, heavy-ion collisions. The basis of the model is a finite-difference solution to covariant hydrodynamics, which will be described in the rest of this paper. This paper also contains: a brief review of the equations and numerical methods we have employed in the solution to the hydrodynamic equations, a detailed description of several of the most important subroutines, and a numerical test on the code. 30 refs., 8 figs., 1 tab.

  20. Coupling relativistic viscous hydrodynamics to Boltzmann descriptions

    SciTech Connect

    Pratt, Scott; Torrieri, Giorgio

    2010-10-15

    Models of relativistic heavy-ion collisions typically involve both a hydrodynamic module to describe the high-density liquidlike phase and a Boltzmann module to simulate the low-density breakup phase, which is gaslike. Coupling the prescriptions is more complicated for viscous prescriptions if one wants to maintain continuity of the entire stress-energy tensor and currents. Derivations for the viscosity for a gas are reviewed, which then lead to expressions for changes in the phase-space occupation based on simple relaxation-time pictures of viscosity. These expressions are shown to consistently reproduce the nonequilibrium components of the stress-energy tensor. An algorithm for generating a Monte Carlo sampling of particles with which to initiate the Boltzmann calculations is also presented.

  1. 3D neutronic/thermal-hydraulic coupled analysis of MYRRHA

    SciTech Connect

    Vazquez, M.; Martin-Fuertes, F.

    2012-07-01

    The current tendency in multiphysics calculations applied to reactor physics is the use of already validated computer codes, coupled by means of an iterative approach. In this paper such an approach is explained concerning neutronics and thermal-hydraulics coupled analysis with MCNPX and COBRA-IV codes using a driver program and file exchange between codes. MCNPX provides the neutronic analysis of heterogeneous nuclear systems, both in critical and subcritical states, while COBRA-IV is a subchannel code that can be used for rod bundles or core thermal-hydraulics analysis. In our model, the MCNP temperature dependence of nuclear data is handled via pseudo-material approach, mixing pre-generated cross section data set to obtain the material with the desired cross section temperature. On the other hand, COBRA-IV has been updated to allow for the simulation of liquid metal cooled reactors. The coupled computational tool can be applied to any geometry and coolant, as it is the case of single fuel assembly, at pin-by-pin level, or full core simulation with the average pin of each fuel-assembly. The coupling tool has been applied to the critical core layout of the SCK-CEN MYRRHA concept, an experimental LBE cooled fast reactor presently in engineering design stage. (authors)

  2. Hierarchical Statistical 3D ' Atomistic' Simulation of Decanano MOSFETs: Drift-Diffusion, Hydrodynamic and Quantum Mechanical Approaches

    NASA Technical Reports Server (NTRS)

    Asenov, Asen; Brown, A. R.; Slavcheva, G.; Davies, J. H.

    2000-01-01

    When MOSFETs are scaled to deep submicron dimensions the discreteness and randomness of the dopant charges in the channel region introduces significant fluctuations in the device characteristics. This effect, predicted 20 year ago, has been confirmed experimentally and in simulation studies. The impact of the fluctuations on the functionality, yield, and reliability of the corresponding systems shifts the paradigm of the numerical device simulation. It becomes insufficient to simulate only one device representing one macroscopical design in a continuous charge approximation. An ensemble of macroscopically identical but microscopically different devices has to be characterized by simulation of statistically significant samples. The aims of the numerical simulations shift from predicting the characteristics of a single device with continuous doping towards estimating the mean values and the standard deviations of basic design parameters such as threshold voltage, subthreshold slope, transconductance, drive current, etc. for the whole ensemble of 'atomistically' different devices in the system. It has to be pointed out that even the mean values obtained from 'atomistic' simulations are not identical to the values obtained from continuous doping simulations. In this paper we present a hierarchical approach to the 'atomistic' simulation of aggressively scaled decanano MOSFETs. A full scale 3D drift-diffusion'atomostic' simulation approach is first described and used for verification of the more economical, but also more restricted, options. To reduce the processor time and memory requirements at high drain voltage we have developed a self-consistent option based on a thin slab solution of the current continuity equation only in the channel region. This is coupled to the Poisson's equation solution in the whole simulation domain in the Gummel iteration cycles. The accuracy of this approach is investigated in comparison with the full self-consistent solution. At low drain

  3. A 3D fully coupled wave-current-sediment model

    NASA Astrophysics Data System (ADS)

    Liu, L.; Shen, L.; Feddy, A.; Bennis, A. C.; Mouazé, D.; Chareyre, B.

    2016-02-01

    In the framework of new energy sources, marine energy can contribute to diversification of energy mix. The study site is the Alderney Race where tidal velocities can exceed 4 meters per second. With this high current speeds, this site represents one of the best opportunities for exploitation of the tidal stream. Our aim is to investigate the influence of this high current speeds on the sediment transport. Modeling the sediment transport in the coastal environment requires an accurate prediction of current velocity and bottom shear stress. For that, the numerical wave-current model MARS-WW3 will be used to analyze the wave-current interaction and comparisons with experimental ADCP data will be presented. To simulate the non-cohesive sediment transport (such as sand, gravel or pebbles), this numerical model will be coupled with a discrete element model like YADE. In first time, the discrete model used will be validated with different tests cases. After, we will present the coupling MARS-WW3-YADE, in particular the expression and exchange of different forces exerted by the fluid flow on the sediments and by sediments on the fluid. Finally, simulations of the sediment transport will be shown and we will interest in particular to the influence of size and density of sediments. We also investigate the effects of tide and wave currents on the sediment displacement.

  4. Coupling the 3D hydro-morphodynamic model Telemac-3D-sisyphe and seismic measurements to estimate bedload transport rates in a small gravel-bed river.

    NASA Astrophysics Data System (ADS)

    Hostache, Renaud; Krein, Andreas; Barrière, Julien

    2014-05-01

    Coupling the 3D hydro-morphodynamic model Telemac-3D-sisyphe and seismic measurements to estimate bedload transport rates in a small gravel-bed river. Renaud Hostache, Andreas Krein, Julien Barrière During flood events, amounts of river bed material are transported via bedload. This causes problems, like the silting of reservoirs or the disturbance of biological habitats. Some current bedload measuring techniques have limited possibilities for studies in high temporal resolutions. Optical systems are usually not applicable because of high turbidity due to concentrated suspended sediment transported. Sediment traps or bedload samplers yield only summative information on bedload transport with low temporal resolution. An alternative bedload measuring technique is the use of seismological systems installed next to the rivers. The potential advantages are observations in real time and under undisturbed conditions. The study area is a 120 m long reach of River Colpach (21.5 km2), a small gravel bed river in Northern Luxembourg. A combined approach of hydro-climatological observations, hydraulic measurements, sediment sampling, and seismological measurements is used in order to investigate bedload transport phenomena. Information derived from seismic measurements and results from a 3-dimensional hydro-morphodynamic model are exemplarily discussed for a November 2013 flood event. The 3-dimensional hydro-morphodynamic model is based on the Telemac hydroinformatic system. This allows for dynamically coupling a 3D hydrodynamic model (Telemac-3D) and a morphodynamic model (Sisyphe). The coupling is dynamic as these models exchange their information during simulations. This is a main advantage as it allows for taking into account the effects of the morphologic changes of the riverbed on the water hydrodynamic and the bedload processes. The coupled model has been calibrated using time series of gauged water depths and time series of bed material collected sequentially (after

  5. Cholla: 3D GPU-based hydrodynamics code for astrophysical simulation

    NASA Astrophysics Data System (ADS)

    Schneider, Evan E.; Robertson, Brant E.

    2016-07-01

    Cholla (Computational Hydrodynamics On ParaLLel Architectures) models the Euler equations on a static mesh and evolves the fluid properties of thousands of cells simultaneously using GPUs. It can update over ten million cells per GPU-second while using an exact Riemann solver and PPM reconstruction, allowing computation of astrophysical simulations with physically interesting grid resolutions (>256^3) on a single device; calculations can be extended onto multiple devices with nearly ideal scaling beyond 64 GPUs.

  6. Separation efficiency of a hydrodynamic separator using a 3D computational fluid dynamics multiscale approach.

    PubMed

    Schmitt, Vivien; Dufresne, Matthieu; Vazquez, Jose; Fischer, Martin; Morin, Antoine

    2014-01-01

    The aim of this study is to investigate the use of computational fluid dynamics (CFD) to predict the solid separation efficiency of a hydrodynamic separator. The numerical difficulty concerns the discretization of the geometry to simulate both the global behavior and the local phenomena that occur near the screen. In this context, a CFD multiscale approach was used: a global model (at the scale of the device) is used to observe the hydrodynamic behavior within the device; a local model (portion of the screen) is used to determine the local phenomena that occur near the screen. The Eulerian-Lagrangian approach was used to model the particle trajectories in both models. The global model shows the influence of the particles' characteristics on the trapping efficiency. A high density favors the sedimentation. In contrast, particles with small densities (1,040 kg/m(3)) are steered by the hydrodynamic behavior and can potentially be trapped by the separator. The use of the local model allows us to observe the particle trajectories near the screen. A comparison between two types of screens (perforated plate vs expanded metal) highlights the turbulent effects created by the shape of the screen.

  7. Coupling hydrodynamic and wave propagation modeling for waveform modeling of SPE.

    NASA Astrophysics Data System (ADS)

    Larmat, C. S.; Steedman, D. W.; Rougier, E.; Delorey, A.; Bradley, C. R.

    2015-12-01

    The goal of the Source Physics Experiment (SPE) is to bring empirical and theoretical advances to the problem of detection and identification of underground nuclear explosions. This paper presents effort to improve knowledge of the processes that affect seismic wave propagation from the hydrodynamic/plastic source region to the elastic/anelastic far field thanks to numerical modeling. The challenge is to couple the prompt processes that take place in the near source region to the ones taking place later in time due to wave propagation in complex 3D geologic environments. In this paper, we report on results of first-principles simulations coupling hydrodynamic simulation codes (Abaqus and CASH), with a 3D full waveform propagation code, SPECFEM3D. Abaqus and CASH model the shocked, hydrodynamic region via equations of state for the explosive, borehole stemming and jointed/weathered granite. LANL has been recently employing a Coupled Euler-Lagrange (CEL) modeling capability. This has allowed the testing of a new phenomenological model for modeling stored shear energy in jointed material. This unique modeling capability has enabled highfidelity modeling of the explosive, the weak grout-filled borehole, as well as the surrounding jointed rock. SPECFEM3D is based on the Spectral Element Method, a direct numerical method for full waveform modeling with mathematical accuracy (e.g. Komatitsch, 1998, 2002) thanks to its use of the weak formulation of the wave equation and of high-order polynomial functions. The coupling interface is a series of grid points of the SEM mesh situated at the edge of the hydrodynamic code domain. Displacement time series at these points are computed from output of CASH or Abaqus (by interpolation if needed) and fed into the time marching scheme of SPECFEM3D. We will present validation tests and waveforms modeled for several SPE tests conducted so far, with a special focus on effect of the local topography.

  8. Hydrodynamics Versus Intracellular Coupling in the Synchronization of Eukaryotic Flagella

    NASA Astrophysics Data System (ADS)

    Quaranta, Greta; Aubin-Tam, Marie-Eve; Tam, Daniel

    2015-12-01

    The influence of hydrodynamic forces on eukaryotic flagella synchronization is investigated by triggering phase locking between a controlled external flow and the flagella of C. reinhardtii. Hydrodynamic forces required for synchronization are over an order of magnitude larger than hydrodynamic forces experienced in physiological conditions. Our results suggest that synchronization is due instead to coupling through cell internal fibers connecting the flagella. This conclusion is confirmed by observations of the vfl3 mutant, with impaired mechanical connection between the flagella.

  9. Hydrodynamics Versus Intracellular Coupling in the Synchronization of Eukaryotic Flagella.

    PubMed

    Quaranta, Greta; Aubin-Tam, Marie-Eve; Tam, Daniel

    2015-12-04

    The influence of hydrodynamic forces on eukaryotic flagella synchronization is investigated by triggering phase locking between a controlled external flow and the flagella of C. reinhardtii. Hydrodynamic forces required for synchronization are over an order of magnitude larger than hydrodynamic forces experienced in physiological conditions. Our results suggest that synchronization is due instead to coupling through cell internal fibers connecting the flagella. This conclusion is confirmed by observations of the vfl3 mutant, with impaired mechanical connection between the flagella.

  10. A 3D Hydrodynamic Model for Heterogeneous Biofilms with Antimicrobial Persistence

    DTIC Science & Technology

    2014-01-01

    EPS production [9], which leads to gradients in osmotic pressure and contributes to pattern formation of mushroom or tower shaped. Figure 5 depicts two...implemented on graphic processing units (GPUs) for high performance computing, in 3-D space and time. Antimicrobial treatment in an infinitely long quiescent...scheme is devised to solve the model consisting of partial differential equations, which is implemented on graphic processing units (GPUs) for high

  11. The Beale-Kato-Majda Criterion for the 3D Magneto-Hydrodynamics Equations

    NASA Astrophysics Data System (ADS)

    Chen, Qionglei; Miao, Changxing; Zhang, Zhifei

    2007-11-01

    We study the blow-up criterion of smooth solutions to the 3D MHD equations. By means of the Littlewood-Paley decomposition, we prove a Beale-Kato-Majda type blow-up criterion of smooth solutions via the vorticity of velocity only, namely sup_{jinmathbb{Z}}int_0^T\\|Δ_j(nabla× u)\\|_infty dt, where Δ j is the frequency localization operator in the Littlewood-Paley decomposition.

  12. Observations and 3D hydrodynamical models of planetary nebulae with Wolf-Rayet type central stars

    NASA Astrophysics Data System (ADS)

    Rechy-García, J. S.; Velázquez, P. F.; Peña, M.; Raga, A. C.

    2017-01-01

    We present high-resolution, long-slit spectroscopic observations of two planetary nebulae, M 1-32 and M 3-15, with [WC] central stars located near the Galactic bulge. The observations were obtained with the 2.1-m telescope of the Observatorio Astronómico Nacional, San Pedro Mártir. M 1-32 shows wide wings on the base of its emission lines and M 3-15 has two very faint high-velocity knots. In order to model both planetary nebulae, we built a three-dimensional model consisting of a jet interacting with an equatorially concentrated slow wind, emulating the presence of a dense torus, using the Yguazú hydrodynamical code. From our hydrodynamical models, we obtained position-velocity diagrams in the [N II]λ6583 line for comparison with the observations. We find that the spectral characteristics of M 1-32 and M 3-15 can be explained with the same physical model - a jet moving inside an asymptotic giant branch wind - using different parameters (physical conditions and position angles of the jet). In agreement with our model and observations, these objects contain a dense torus seeing pole-on and a bipolar jet escaping through the poles. Then, we propose to classify this kind of objects as spectroscopic bipolar nebulae, although they have been classified morphologically as compact, round, or elliptical nebulae or with `close collimated lobes'.

  13. Developing an integrated 3D-hydrodynamic and emerging contaminant model for assessing water quality in a Yangtze Estuary Reservoir.

    PubMed

    Xu, Cong; Zhang, Jingjie; Bi, Xiaowei; Xu, Zheng; He, Yiliang; Gin, Karina Yew-Hoong

    2017-12-01

    An integrated 3D-hydrodynamic and emerging contaminant model was developed for better understanding of the fate and transport of emerging contaminants in Qingcaosha Reservoir. The reservoir, which supplies drinking water for nearly half of Shanghai's population, is located in Yangtze Delta. The integrated model was built by Delft3D suite, a fully integrated multidimensional modeling software. Atrazine and Bisphenol A (BPA) were selected as two representative emerging contaminants for the study in this reservoir. The hydrodynamic model was calibrated and validated against observations from 2011 to 2015 while the integrated model was calibrated against observations from 2014 to 2015 and then applied to explore the potential risk of high atrazine concentrations in the reservoir driven by agriculture activities. Our results show that the model is capable of describing the spatial and temporal patterns of water temperature, salinity and the dynamic distributions of two representative emerging contaminants (i.e. atrazine and BPA) in the reservoir. The physical and biodegradation processes in this study were found to play a crucial role in determining the fate and transport of atrazine and BPA in the reservoir. The model also provides an insight into the potential risk of emerging contaminants and possible mitigation thresholds. The integrated approach can be a very useful tool to support policy-makers in the future management of Qingcaosha Reservoir. Copyright © 2017 Elsevier Ltd. All rights reserved.

  14. Coupled Dictionary Learning for the Detail-Enhanced Synthesis of 3-D Facial Expressions.

    PubMed

    Liang, Haoran; Liang, Ronghua; Song, Mingli; He, Xiaofei

    2016-04-01

    The desire to reconstruct 3-D face models with expressions from 2-D face images fosters increasing interest in addressing the problem of face modeling. This task is important and challenging in the field of computer animation. Facial contours and wrinkles are essential to generate a face with a certain expression; however, these details are generally ignored or are not seriously considered in previous studies on face model reconstruction. Thus, we employ coupled radius basis function networks to derive an intermediate 3-D face model from a single 2-D face image. To optimize the 3-D face model further through landmarks, a coupled dictionary that is related to 3-D face models and their corresponding 3-D landmarks is learned from the given training set through local coordinate coding. Another coupled dictionary is then constructed to bridge the 2-D and 3-D landmarks for the transfer of vertices on the face model. As a result, the final 3-D face can be generated with the appropriate expression. In the testing phase, the 2-D input faces are converted into 3-D models that display different expressions. Experimental results indicate that the proposed approach to facial expression synthesis can obtain model details more effectively than previous methods can.

  15. 3D hydrodynamic lift force model for AREVA fuel assembly in EDF PWRs

    SciTech Connect

    Ekomie, S.; Bigot, J.; Dolleans, Ph.; Vallory, J.

    2007-07-01

    The accurate knowledge of the hydrodynamic lift force acting on a fuel assembly in PWR core is necessary to design the hold-down system of this assembly. This paper presents the model used by AREVA NP and EDF for computing this force. It results from a post-processing of sub-channel thermal-hydraulic codes respectively porous medium approach code THYC (EDF) and sub-channel type code FLICA III-F (AREVA NP). This model is based on the application of the Euler's theorem. Some hypotheses used to simplify the complexity of fuel assembly geometry are supported by CFD calculations. Then the model is compared to some experimental results obtained on a single fuel assembly inserted in the HERMES-T test facility located in CEA - Cadarache. Finally, the model is applied to calculate the lift force for the whole core. Various loading patterns including homogenous and mixed cores have been investigated and compared. (authors)

  16. An analytic hydrodynamical model of rotating 3D expansion in heavy-ion collisions

    NASA Astrophysics Data System (ADS)

    Nagy, M. I.; Csörgő, T.

    2016-10-01

    A new exact and analytic solution of non-relativistic fireball hydrodynamics is presented. It describes an expanding three-axis ellipsoid that rotates along one of its principal axes. The observables are calculated using simple analytic formulas. Following earlier works, it is pointed out that azimuthal oscillation of the off-diagonal Bertsch-Pratt radii of Bose-Einstein correlations as well as rapidity dependent directed and third flow measurements provide means to determine the magnitude of the rotation of the fireball. It is argued that observing this rotation and its dependence on collision energy may lead to new information on the equation of state of the strongly interacting quark gluon plasma produced in high energy heavy ion collisions.

  17. An Analytic Hydrodynamical Model of Rotating 3d Expansion in Heavy-Ion Collisions

    NASA Astrophysics Data System (ADS)

    Nagy, M. I.; Csörgő, T.

    A new exact and analytic solution of non-relativistic fireball hydrodynamics is presented. It describes an expanding three-axis ellipsoid that rotates along one of its principal axes. The observables are calculated using simple analytic formulas. Following earlier works, it is pointed out that azimuthal oscillation of the off-diagonal Bertsch-Pratt radii of Bose-Einstein correlations as well as rapidity dependent directed and third flow measurements provide means to determine the magnitude of the rotation of the fireball. It is argued that observing this rotation and its dependence on collision energy may lead to new information on the equation of state of the strongly interacting quark gluon plasma produced in high energy heavy ion collisions.

  18. Quantitative analysis of 3D hydrodynamic focusing of microparticles by digital holographic microscopy

    NASA Astrophysics Data System (ADS)

    Perfetti, C.; Iorio, C. S.; El Mallahi, A.; Dubois, F.

    2014-02-01

    In the field of life sciences, the monitoring of biological samples has become a great concern to control the ecosystem evolution. However, their characterization is often time-consuming because the typical size of the organisms/particles of interest is several orders of magnitude smaller than the size of the sample under observation. Optical visualization systems require, then, high magnifications that severely limit the depth of focus and consequently decrease the sampling rate. To tackle this issue, the most straightforward technique consists in focusing the samples to fit the observation field of view by means of so-called "sheath flows". This expedient allows for increasing the overall flow rate, inversely related to the sampling time. In this article, a cost-effective 3D hydro-focusing device is presented. Several flow rates have been tested for both sample and sheath flows, and a thorough investigation of the shape of the focused streamlines conducted in order to validate the prototype design. The 3D position of the sampled micro-objects has been located by digital holographic microscopy and their distribution in cross-sections downstream the injection nozzle compared to numerical simulations. A maximum constriction—ratio between the part of the cross-sections where particles are present with and without focusing sheath flow—of 4.4 % has been observed confirming the potentiality of the technique. Also, a successful match between experiment and numerical simulation has been noted.

  19. 3D geometry and hydrodynamic modifications in fractured and porous rock samples through chemical alterations.

    NASA Astrophysics Data System (ADS)

    Noiriel, C. N.

    2011-12-01

    Fractured and porous rocks are the principal path for water flow and potential contamination. Modification of fracture topology and transmissivity by reactive fluids is an important and complex geological process. In carbonate rocks, fractures and porous media properties may change quickly and strongly due to natural processes (e.g. karstification, salt intrusion) or anthropogenic practice (e.g. CO2 geological sequestration). Recent application of X-ray micro-tomography to the Earth Sciences, which allows the visualization of 3D objects with a micrometre resolution, has considerably increased experimental capability by giving access to a 4D spatio-temporal vision (3D geometry + time) of the physical-chemical processes within the rocks. New information is now accessible, which provides a better understanding of the processes and allows the numerical models to be better constrained. I will present the application of X-ray micro-tomography to study changes of petrophysical properties (e.g. porosity, permeability, mineral surface area, etc.) of fractured and porous rocks in response to fluid-rock interactions (dissolution and precipitation). Experimental results will be discussed in regard to numerical modelling of flow and transport. Keywords: X-ray micro-tomography, fracture, porous media, dissolution, precipitation, carbon dioxide sequestration, limestone, reactive surface, geochemical modelling,

  20. PCB modeling in the Gulf of Lions using a 3D coupled model

    NASA Astrophysics Data System (ADS)

    Alekseenko, Elena; Thouvenin, Bénédicte; Tixier, Céline; Tronczynski, Jacek; Garreau, Pierre; Verney, Romaric; Carlotti, Francois; Espinasse, Boris; Queguiner, Bernard; Baklouti, Melika

    2013-04-01

    Polychlorobiphenyls (PCBs) are synthetic chlorinated organic compounds, which were widely used in many industrial materials. These compounds are persistent, bioaccumulable and toxic for living organisms. The riverine and atmospheric fluxes are the major routes of entry for these chemicals into marine ecosystems, where they are now embedded in natural biogeochemical cycles (Lohmann et al. 2007). Because of bioaccumulation and biomagnification processes in food webs, even nowadays, these compounds may attain dangerous concentration levels especially in the top predators including marine mammals. The contamination of marine biota by PCBs in Mediterranean has also become a matter of concern as the concentrations in some species are at levels putting them at risk for significant biological effects. This may pose potential human health risks in commercial edible species (Carpenter 2006). Planktonic populations play a key role in the trophic food webs in marine ecosystems by the mobilisation and transfer of energy and organic matter towards higher trophic levels. This work aims at a better understanding of the role of plankton in the transfer of PCBs to higher trophic levels in the Gulf of Lions (Mediterranean) by coupling of biogeochemical, ecological and hydrodynamical processes. Modeling is a powerful tool for coupling processes of different disciplines and scales. The recent development of 3D hydrodynamic, hydrosedimentary and biogeochemical models in the Mediterranean (André et al, 2005,2009, Ulses et al, 2008, Dufois et al, 2008, Auger et al, 2011), enables feasibility testing of coupling these models with transfer processes of chemical contaminants. The lack of detailed observations in the sea and the significant uncertainty on contaminants inputs prevent from a proper validation of such modeling tests. However, these tools are very useful to assess the influence of fast processes on the transfer of contaminants to bioaccumulative species. Sensitivity analysis

  1. Left Ventricular Myocardial Segmentation in 3D Ultrasound Recordings: Effect of Different Endoand Epicardial Coupling Strategies.

    PubMed

    Pedrosa, Joao; Barbosa, Daniel; Heyde, Brecht; Schnell, Frederic; Rosner, Assami; Claus, Piet; D Hooge, Jan

    2016-12-12

    Cardiac volume/function assessment remains a critical step in daily cardiology and 3D ultrasound plays an increasingly important role. Though development of automatic endocardial segmentation methods has received much attention, the same cannot be said about epicardial segmentation, in spite of the importance of full myocardial segmentation. In this study, different ways of coupling the endo- and epicardial segmentation are contrasted and compared to uncoupled segmentation. For this purpose, the B-spline Explicit Active Surfaces framework was used. Twenty-seven 3D echocardiographic images were used to validate the different coupling strategies which were compared to manual contouring of the endo- and epicardial borders performed by an expert. It is shown that an independent segmentation of the endocardium followed by an epicardial segmentation coupled to the endocardium is the most advantageous. In this way, a framework for fully automatic 3D myocardial segmentation is proposed using a novel coupling strategy.

  2. An Investigation of the Formation and Line Properties of MgH in 3D Hydrodynamical Model Stellar Atmospheres

    NASA Astrophysics Data System (ADS)

    Thygesen, Anders O.; Kirby, Evan N.; Gallagher, Andrew J.; Ludwig, Hans-G.; Caffau, Elisabetta; Bonifacio, Piercarlo; Sbordone, Luca

    2017-07-01

    Studies of the isotopic composition of magnesium in cool stars have so far relied upon the use of 1D model atmospheres. Since the isotopic ratios derived are based on asymmetries of optical MgH lines, it is important to test the impact from other effects affecting line asymmetries, like stellar convection. Here, we present a theoretical investigation of the effects of including self-consistent modeling of convection. Using spectral syntheses based on 3D hydrodynamical CO5BOLD models of dwarfs (4000 K ≲ T eff ≲ 5160 K, 4.0 ≤ {log}g ≤ 4.5, -3.0≤slant [{Fe}/{{H}}]≤slant -1.0) and giants (T eff ˜ 4000 K, {log}g = 1.5, -3.0≤slant [{Fe}/{{H}}]≤slant -1.0), we perform a detailed analysis comparing 3D and 1D syntheses. We describe the impact on the formation and behavior of MgH lines from using 3D models, and perform a qualitative assessment of the systematics introduced by the use of 1D syntheses. Using 3D model atmospheres significantly affect the strength of the MgH lines, especially in dwarfs, with 1D syntheses requiring an abundance correction of up to +0.69 dex, with the largest for our 5000 K models. The corrections are correlated with T eff and are also affected by the metallicity. The shape of the strong 24MgH component in the 3D syntheses is poorly reproduced in 1D. This results in 1D syntheses underestimating 25Mg by up to ˜5 percentage points and overestimating 24Mg by a similar amount for dwarfs. This discrepancy increases with decreasing metallicity. 26Mg is recovered relatively well, with the largest difference being ˜2 percentage points. The use of 3D for giants has less impact, due to smaller differences in the atmospheric structure and a better reproduction of the line shape in 1D.

  3. Single-layer microfluidic device to realize hydrodynamic 3D flow focusing.

    PubMed

    Eluru, Gangadhar; Julius, Lourdes Albina Nirupa; Gorthi, Sai Siva

    2016-10-18

    The recent rapid growth of microfluidic applications has witnessed the emergence of several particle flow focusing techniques for analysis and/or further processing. The majority of flow focusing techniques employ an external sheath fluid to achieve sample flow focusing independent of the flow rate, in contrast to sheath-free techniques. However, the introduction of a sheath fluid to surround the sample fluid has complicated the device design and fabrication, generally involving multi-layer fabrication and bonding of multiple polydimethylsiloxane (PDMS) layers. Several promising efforts have been made to reduce the complexity of fabrication. However, most of these methods involved the use of inertial/Dean effects, which in turn demanded the use of higher sample flow rates. In this paper, we report a method of flow focusing that uses a sheath fluid to enclose the sample in a single layer of PDMS, and that possesses applicability for a wide range of sample flow rates. This method of flow focusing uses abrupt channel depth variation and a shift of one of the sample-sheath junctions (termed as 'junction-shift') against the direction of the sample flow. This configuration serves to manipulate the sample fluid with respect to the sheath fluid and achieve the desired flow focusing. This design facilitates the attainment of 3D flow focusing in two sequential steps (depth-wise and then along the lateral direction) and in distinct regions, hence enabling the regions to be used in imaging and non-imaging flow cytometric applications, respectively. Simulations were performed to characterize and determine the optimum set of design parameters. Experimental demonstrations of this technique were carried out by focusing fluorescein dye and blood cells in flow.

  4. A GPU-Accelerated 3-D Coupled Subsample Estimation Algorithm for Volumetric Breast Strain Elastography.

    PubMed

    Peng, Bo; Wang, Yuqi; Hall, Timothy J; Jiang, Jingfeng

    2017-04-01

    Our primary objective of this paper was to extend a previously published 2-D coupled subsample tracking algorithm for 3-D speckle tracking in the framework of ultrasound breast strain elastography. In order to overcome heavy computational cost, we investigated the use of a graphic processing unit (GPU) to accelerate the 3-D coupled subsample speckle tracking method. The performance of the proposed GPU implementation was tested using a tissue-mimicking phantom and in vivo breast ultrasound data. The performance of this 3-D subsample tracking algorithm was compared with the conventional 3-D quadratic subsample estimation algorithm. On the basis of these evaluations, we concluded that the GPU implementation of this 3-D subsample estimation algorithm can provide high-quality strain data (i.e., high correlation between the predeformation and the motion-compensated postdeformation radio frequency echo data and high contrast-to-noise ratio strain images), as compared with the conventional 3-D quadratic subsample algorithm. Using the GPU implementation of the 3-D speckle tracking algorithm, volumetric strain data can be achieved relatively fast (approximately 20 s per volume [2.5 cm ×2.5 cm ×2.5 cm]).

  5. An in-depth spectroscopic examination of molecular bands from 3D hydrodynamical model atmospheres. II. Carbon-enhanced metal-poor 3D model atmospheres

    NASA Astrophysics Data System (ADS)

    Gallagher, A. J.; Caffau, E.; Bonifacio, P.; Ludwig, H.-G.; Steffen, M.; Homeier, D.; Plez, B.

    2017-02-01

    Context. Tighter constraints on metal-poor stars we observe are needed to better understand the chemical processes of the early Universe. Computing a stellar spectrum in 3D allows one to model complex stellar behaviours, which cannot be replicated in 1D. Aims: We examine the effect that the intrinsic CNO abundances have on a 3D model structure and the resulting 3D spectrum synthesis. Methods: Model atmospheres were computed in 3D for three distinct CNO chemical compositions using the CO5BOLD model atmosphere code, and their internal structures were examined. Synthetic spectra were computed from these models using Linfor3D and they were compared. New 3D abundance corrections for the G-band and a selection of UV OH lines were also computed. Results: The varying CNO abundances change the metal content of the 3D models. This had an effect on the model structure and the resulting synthesis. However, it was found that the C/O ratio had a larger effect than the overall metal content of a model. Conclusions: Our results suggest that varying the C/O ratio has a substantial impact on the internal structure of the 3D model, even in the hot turn-off star models explored here. This suggests that bespoke 3D models, for specific CNO abundances should be sought. Such effects are not seen in 1D at these temperature regimes.

  6. Surface-effect corrections for solar-like oscillations using 3D hydrodynamical simulations. I. Adiabatic oscillations

    NASA Astrophysics Data System (ADS)

    Sonoi, T.; Samadi, R.; Belkacem, K.; Ludwig, H.-G.; Caffau, E.; Mosser, B.

    2015-11-01

    Context. The CoRoT and Kepler space-borne missions have provided us with a wealth of high-quality observational data that allows for seismic inferences of stellar interiors. This requires the computation of precise and accurate theoretical frequencies, but imperfect modeling of the uppermost stellar layers introduces systematic errors. To overcome this problem, an empirical correction has been introduced by Kjeldsen et al. (2008, ApJ, 683, L175) and is now commonly used for seismic inferences. Nevertheless, we still lack a physical justification allowing for the quantification of the surface-effect corrections. Aims: Our aim is to constrain the surface-effect corrections across the Hertzsprung-Russell (HR) diagram using a set of 3D hydrodynamical simulations. Methods: We used a grid of these simulations computed with the CO5BOLD code to model the outer layers of solar-like stars. Upper layers of the corresponding 1D standard models were then replaced by the layers obtained from the horizontally averaged 3D models. The frequency differences between these patched models and the 1D standard models were then calculated using the adiabatic approximation and allowed us to constrain the Kjeldsen et al. power law, as well as a Lorentzian formulation. Results: We find that the surface effects on modal frequencies depend significantly on both the effective temperature and the surface gravity. We further provide the variation in the parameters related to the surface-effect corrections using their power law as well as a Lorentzian formulation. Scaling relations between these parameters and the elevation (related to the Mach number) is also provided. The Lorentzian formulation is shown to be more robust for the whole frequency spectrum, while the power law is not suitable for the frequency shifts in the frequency range above νmax. Finally, we show that, owing to turbulent pressure, the elevation of the uppermost layers modifies the location of the hydrogen ionization zone and

  7. Numerical modelling and measurement of cell trajectories in 3-D under the influence of dielectrophoretic and hydrodynamic forces.

    PubMed

    Holzner, Felix; Hagmeyer, Britta; Schütte, Julia; Kubon, Massimo; Angres, Brigitte; Stelzle, Martin

    2011-09-01

    This research is part of a program aiming at the development of a fluidic microsystem for in vitro drug testing. For this purpose, primary cells need to be assembled to form cellular aggregates in such a way as to resemble the basic functional units of organs. By providing for in vivo-like cellular contacts, proper extracellular matrix interaction and medium perfusion it is expected that cells will retain their phenotype over prolonged periods of time. In this way, in vitro test systems exhibiting in vivo type predictivity in drug testing are envisioned. Towards this goal a 3-D microstructure micro-milled in a cyclic olefin copolymer (COC) was designed in such a way as to assemble liver cells via insulator-based dielectrophoresis (iDEP) in a sinusoid-type fashion. First, numeric modelling and simulation of dielectrophoretic and hydrodynamic forces acting on cells in this microsystem was performed. In particular, the problem of the discontinuity of the electric field at the interface between the fluid media in the system and the polymer materials it consists of was addressed. It was shown that in certain cases, the material of the microsystem may be neglected altogether without introducing considerable error into the numerical solution. This simplification enabled the simulation of 3-D cell trajectories in complex chip geometries. Secondly, the assembly of HepG2 cells by insulator-based dielectrophoresis in this device is demonstrated. Finally, theoretical results were validated by recording 3-D cell trajectories and the Clausius-Mossotti factor of liver cells was determined by combining results obtained from both simulation and experiment.

  8. 3D conductive coupling for efficient generation of prominent Fano resonances in metamaterials

    NASA Astrophysics Data System (ADS)

    Liu, Zhiguang; Liu, Zhe; Li, Jiafang; Li, Wuxia; Li, Junjie; Gu, Changzhi; Li, Zhi-Yuan

    2016-06-01

    We demonstrate a 3D conductive coupling mechanism for the efficient generation of prominent and robust Fano resonances in 3D metamaterials (MMs) formed by integrating vertical U-shape split-ring resonators (SRRs) or vertical rectangular plates along a planar metallic hole array with extraordinary optical transmission (EOT). In such a configuration, intensified vertical E-field is induced along the metallic holes and naturally excites the electric resonances of the vertical structures, which form non-radiative “dark” modes. These 3D conductive “dark” modes strongly interfere with the “bright” resonance mode of the EOT structure, generating significant Fano resonances with both prominent destructive and constructive interferences. The demonstrated 3D conductive coupling mechanism is highly universal in that both 3D MMs with vertical SRRs and vertical plates exhibit the same prominent Fano resonances despite their dramatic structural difference, which is conceptually different from conventional capacitive and inductive coupling mechanisms that degraded drastically upon small structural deviations.

  9. 3D FEM-BEM-coupling method to solve magnetostatic Maxwell equations

    NASA Astrophysics Data System (ADS)

    Bruckner, Florian; Vogler, Christoph; Feischl, Michael; Praetorius, Dirk; Bergmair, Bernhard; Huber, Thomas; Fuger, Markus; Suess, Dieter

    2012-05-01

    3D magnetostatic Maxwell equations are solved using the direct Johnson-Nédélec FEM-BEM coupling method and a reduced scalar potential approach. The occurring BEM matrices are calculated analytically and approximated by H-matrices using the ACA+ algorithm. In addition a proper preconditioning method is suggested that allows to solve large-scale problems using iterative solvers.

  10. Emission profile variability in hot star winds. A pseudo-3D method based on radiation hydrodynamics simulations

    NASA Astrophysics Data System (ADS)

    Dessart, L.; Owocki, S. P.

    2002-03-01

    We present theoretical calculations of emission line profile variability based on hot star wind structure calculated numerically using radiation hydrodynamics simulations. A principal goal is to examine how well short-time-scale variations observed in wind emission lines can be modelled by wind structure arising from small-scale instabilities intrinsic to the line-driving of these winds. The simulations here use a new implementation of the Smooth Source Function formalism for line-driving within a one-dimensional (1D) operation of the standard hydrodynamics code ZEUS-2D. As in previous wind instability simulations, the restriction to 1D is necessitated by the computational costs of non-local integrations needed for the line-driving force; but we find that naive application of such simulations within an explicit assumption of spherically symmetric structure leads to an unobserved strong concentration of profile variability toward the line wings. We thus introduce a new ``patch method'' for mimicking a full 3D wind structure by collecting random sequences of 1D simulations to represent the structure evolution along radial rays that extend over a selectable patch-size of solid angle. We provide illustrative results for a selection of patch sizes applied to a simulation with standard assumptions that govern the details of instability-generated wind structure, and show in particular that a typical model with a patch size of about 3 deg can qualitatively reproduce the fundamental properties of observed profile variations. We conclude with a discussion of prospects for extending the simulation method to optically thick winds of Wolf-Rayet (WR) stars, and for thereby applying our ``patch method'' to dynamical modelling of the extensive variability observed in wind emission lines from these WR stars.

  11. Characterisation of dynamic couplings at lower limb residuum/socket interface using 3D motion capture.

    PubMed

    Tang, Jinghua; McGrath, Michael; Laszczak, Piotr; Jiang, Liudi; Bader, Dan L; Moser, David; Zahedi, Saeed

    2015-12-01

    Design and fitting of artificial limbs to lower limb amputees are largely based on the subjective judgement of the prosthetist. Understanding the science of three-dimensional (3D) dynamic coupling at the residuum/socket interface could potentially aid the design and fitting of the socket. A new method has been developed to characterise the 3D dynamic coupling at the residuum/socket interface using 3D motion capture based on a single case study of a trans-femoral amputee. The new model incorporated a Virtual Residuum Segment (VRS) and a Socket Segment (SS) which combined to form the residuum/socket interface. Angular and axial couplings between the two segments were subsequently determined. Results indicated a non-rigid angular coupling in excess of 10° in the quasi-sagittal plane and an axial coupling of between 21 and 35 mm. The corresponding angular couplings of less than 4° and 2° were estimated in the quasi-coronal and quasi-transverse plane, respectively. We propose that the combined experimental and analytical approach adopted in this case study could aid the iterative socket fitting process and could potentially lead to a new socket design.

  12. Modelling of PCB trophic transfer in the Gulf of Lions; 3D coupled model application

    NASA Astrophysics Data System (ADS)

    Alekseenko, Elena; Thouvenin, Benedicte; Tronczynsky, Jacek; Carlotti, Francois; Garreau, Pierre; Tixier, Celine; Baklouti, Melika

    2017-04-01

    This work aims at assessing the role of plankton in the transfer of PCBs to higher trophic levels in the Gulf of Lions (NW Mediterranean Sea) using a 3D modelling approach, which is coupling biogeochemical and hydrodynamical processes and taking into account the physical-chemical properties of PCBs. Transport of various PCB species were simulated during one year: total dissolved, freely dissolved, particulate, biosorbed on plankton, assimilated by zooplankton. PCB budgets and fluxes into the Gulf of Lions between various species were governed by different processes, such as: adsorption/desorption, bacteria and plankton mortality, zooplankton excretion, grazing, mineralization, volatilization and biodegradation. CB153 (2,2',4,4',5,5' hexachlorobiphényle) congener have been considered in the model, since it presents a large amount of PCB among the other congeners in the environment of the Gulf of Lions. At first, the simulated PCBs distributions within particulate matter and plankton were compared with available in-situ measurements (COSTAS and Merlumed field campaigns) performed in the Gulf of Lions. Two size classes of plankton X (60μ m

  13. The Transient 3-D Transport Coupled Code TORT-TD/ATTICA3D for High-Fidelity Pebble-Bed HTGR Analyses

    NASA Astrophysics Data System (ADS)

    Seubert, Armin; Sureda, Antonio; Lapins, Janis; Bader, Johannes; Laurien, Eckart

    2012-01-01

    This article describes the 3D discrete ordinates-based coupled code system TORT-TD/ATTICA3D that aims at steady state and transient analyses of pebble-bed high-temperature gas cooled reactors. In view of increasing computing power, the application of time-dependent neutron transport methods becomes feasible for best estimate evaluations of safety margins. The calculation capabilities of TORT-TD/ATTICA3D are presented along with the coupling approach, with focus on the time-dependent neutron transport features of TORT-TD. Results obtained for the OECD/NEA/NSC PBMR-400 benchmark demonstrate the transient capabilities of TORT-TD/ATTICA3D.

  14. Hydrodynamics of Normal Atomic Gases with Spin-orbit Coupling

    PubMed Central

    Hou, Yan-Hua; Yu, Zhenhua

    2015-01-01

    Successful realization of spin-orbit coupling in atomic gases by the NIST scheme opens the prospect of studying the effects of spin-orbit coupling on many-body physics in an unprecedentedly controllable way. Here we derive the linearized hydrodynamic equations for the normal atomic gases of the spin-orbit coupling by the NIST scheme with zero detuning. We show that the hydrodynamics of the system crucially depends on the momentum susceptibilities which can be modified by the spin-orbit coupling. We reveal the effects of the spin-orbit coupling on the sound velocities and the dipole mode frequency of the gases by applying our formalism to the ideal Fermi gas. We also discuss the generalization of our results to other situations. PMID:26483090

  15. Hydrodynamics of Normal Atomic Gases with Spin-orbit Coupling.

    PubMed

    Hou, Yan-Hua; Yu, Zhenhua

    2015-10-20

    Successful realization of spin-orbit coupling in atomic gases by the NIST scheme opens the prospect of studying the effects of spin-orbit coupling on many-body physics in an unprecedentedly controllable way. Here we derive the linearized hydrodynamic equations for the normal atomic gases of the spin-orbit coupling by the NIST scheme with zero detuning. We show that the hydrodynamics of the system crucially depends on the momentum susceptibilities which can be modified by the spin-orbit coupling. We reveal the effects of the spin-orbit coupling on the sound velocities and the dipole mode frequency of the gases by applying our formalism to the ideal Fermi gas. We also discuss the generalization of our results to other situations.

  16. Making Faranoff-Riley I radio sources. I. Numerical hydrodynamic 3D simulations of low-power jets

    NASA Astrophysics Data System (ADS)

    Massaglia, S.; Bodo, G.; Rossi, P.; Capetti, S.; Mignone, A.

    2016-11-01

    Context. Extragalactic radio sources have been classified into two classes, Fanaroff-Riley I and II, which differ in morphology and radio power. Strongly emitting sources belong to the edge-brightened FR II class, and weakly emitting sources to the edge-darkened FR I class. The origin of this dichotomy is not yet fully understood. Numerical simulations are successful in generating FR II morphologies, but they fail to reproduce the diffuse structure of FR Is. Aims: By means of hydro-dynamical 3D simulations of supersonic jets, we investigate how the displayed morphologies depend on the jet parameters. Bow shocks and Mach disks at the jet head, which are probably responsible for the hot spots in the FR II sources, disappear for a jet kinetic power ℒkin ≲ 1043 erg s-1. This threshold compares favorably with the luminosity at which the FR I/FR II transition is observed. Methods: The problem is addressed by numerical means carrying out 3D HD simulations of supersonic jets that propagate in a non-homogeneous medium with the ambient temperature that increases with distance from the jet origin, which maintains constant pressure. Results: The jet energy in the lower power sources, instead of being deposited at the terminal shock, is gradually dissipated by the turbulence. The jets spread out while propagating, and they smoothly decelerate while mixing with the ambient medium and produce the plumes characteristic of FR I objects. Conclusions: Three-dimensionality is an essential ingredient to explore the FR I evolution becausethe properties of turbulence in two and three dimensions are very different, since there is no energy cascade to small scales in two dimensions, and two-dimensional simulations with the same parameters lead to FRII-like behavior.

  17. Understanding the Impact of Reservoir Operations on Temperature Hydrodynamics at Shasta Lake through 2D and 3D Modeling

    NASA Astrophysics Data System (ADS)

    Hallnan, R.; Busby, D.; Saito, L.; Daniels, M.; Danner, E.; Tyler, S.

    2016-12-01

    Stress on California's salmon fisheries as a result of recent drought highlights a need for effective temperature management in the Sacramento River. Cool temperatures are required for Chinook salmon spawning and rearing. At Shasta Dam in northern California, managers use selective reservoir withdrawals to meet downstream temperature thresholds set for Chinook salmon populations. Shasta Dam is equipped with a temperature control device (TCD) that allows for water withdrawals at different reservoir depths. A two-dimensional CE-QUAL-W2 (W2) model of Shasta Reservoir has been used to understand the impacts of TCD operations on reservoir and discharge dynamics at Shasta. W2 models the entire reservoir based on hydrologic and meteorological inputs, and therefore can be used to simulate various hydroclimatic conditions, reservoir operations, and resulting reservoir conditions. A limitation of the W2 model is that it only captures reservoir conditions in two dimensions (length and depth), which may not represent local hydrodynamic effects of TCD operations that could affect simulation of discharge temperatures. Thus, a three-dimensional (3D) model of the TCD and the immediately adjacent upstream reservoir has been constructed using computational fluid dynamics (CFD) in ANSYS Fluent. This 3D model provides additional insight into the mixing effects of different TCD operations, and resulting reservoir outflow temperatures. The drought conditions of 2015 provide a valuable dataset for assessing the efficacy of modeling the temperature profile of Shasta Reservoir under very low inflow volumes, so the W2 and CFD models are compared for model performance in late 2015. To assist with this assessment, data from a distributed temperature sensing (DTS) deployment at Shasta Lake since August 2015 are used. This presentation describes model results from both W2 as well as the CFD model runs during late 2015, and discuss their efficacy for modeling drought conditions.

  18. Flexible simulation framework to couple processes in complex 3D models for subsurface utilization assessment

    NASA Astrophysics Data System (ADS)

    Kempka, Thomas; Nakaten, Benjamin; De Lucia, Marco; Nakaten, Natalie; Otto, Christopher; Pohl, Maik; Tillner, Elena; Kühn, Michael

    2016-04-01

    Utilization of the geological subsurface for production and storage of hydrocarbons, chemical energy and heat as well as for waste disposal requires the quantification and mitigation of environmental impacts as well as the improvement of georesources utilization in terms of efficiency and sustainability. The development of tools for coupled process simulations is essential to tackle these challenges, since reliable assessments are only feasible by integrative numerical computations. Coupled processes at reservoir to regional scale determine the behaviour of reservoirs, faults and caprocks, generally demanding for complex 3D geological models to be considered besides available monitoring and experimenting data in coupled numerical simulations. We have been developing a flexible numerical simulation framework that provides efficient workflows for integrating the required data and software packages to carry out coupled process simulations considering, e.g., multiphase fluid flow, geomechanics, geochemistry and heat. Simulation results are stored in structured data formats to allow for an integrated 3D visualization and result interpretation as well as data archiving and its provision to collaborators. The main benefits in using the flexible simulation framework are the integration of data geological and grid data from any third party software package as well as data export to generic 3D visualization tools and archiving formats. The coupling of the required process simulators in time and space is feasible, while different spatial dimensions in the coupled simulations can be integrated, e.g., 0D batch with 3D dynamic simulations. User interaction is established via high-level programming languages, while computational efficiency is achieved by using low-level programming languages. We present three case studies on the assessment of geological subsurface utilization based on different process coupling approaches and numerical simulations.

  19. Coupling 3D printing with hot-melt extrusion to produce controlled-release tablets.

    PubMed

    Zhang, Jiaxiang; Feng, Xin; Patil, Hemlata; Tiwari, Roshan V; Repka, Michael A

    2017-03-15

    The main objective of this work was to explore the potential of coupling fused deposition modeling in three-dimensional (3D) printing with hot-melt extrusion (HME) technology to facilitate additive manufacturing, in order to fabricate tablets with enhanced extended release properties. Acetaminophen was used as the model drug and different grades and ratios of polymers were used to formulate tablets. Three-point bending and hardness tests were performed to determine the mechanical properties of the filaments and tablets. 3D-printed tablets, directly compressed mill-extruded tablets, and tablets prepared from a physical mixture were evaluated for drug release rates using a USP-II dissolution apparatus. The surface and cross-sectional morphology of the 3D-printed tablets were assessed by scanning electron microscopy. Differential scanning calorimetry and thermogravimetric analysis were used to characterize the crystal states and thermal properties of materials, respectively. The 3D-printed tablets had smooth surfaces and tight structures; therefore, they showed better extended drug release rates than the directly compressed tablets did. Further, this study clearly demonstrated the feasibility of coupling HME with 3D printing technology, which allows for the formulation of drug delivery systems using different grades and ratios of pharmaceutical polymers. In addition, formulations can be made based on the personal needs of patients.

  20. Coupled GFD and CFD modeling of hydrodynamic impacts on coastal bridges under climate change conditions

    NASA Astrophysics Data System (ADS)

    Kraatz, S.; Shields, G. M.; Tang, H.

    2011-12-01

    In the United States, more than half of bridge failures are attributed to hydraulic factors. Under climate change conditions, in particular sea level rise and stronger hurricanes, coastal bridges could be at risk of damage and destruction due to severe hydrodynamic impacts. In this work, hydrodynamic forces are simulated at a coastal bridge of New York City, and effects of the projected climate change conditions are investigated. In order to investigate the impacts on the bridge, a coupled geophysical fluid dynamic (GFD) and computational fluid dynamics (CFD) approach is employed. The former is used to capture large-scale background currents and the latter is employed to compute the local flow motions. The hybrid approach is realized by a two-way coupling of CFD and GFD models and domain decomposition method implemented with Chimera grids, and FVCOM is used as the GFD model and an unsteady, 3D incompressible flow solver is used as the CFD model. The coupled model approach allows for accurate small-scale simulations of hydrodynamic loads that are not possible by FVCOM alone, and permits for reduced computational effort associated with the CFD model only approach. Illustration will be made on how the hydrodynamics loads change with sea level and storm surge conditions.

  1. Discrimination of Rhizoma Gastrodiae (Tianma) using 3D synchronous fluorescence spectroscopy coupled with principal component analysis

    NASA Astrophysics Data System (ADS)

    Fan, Qimeng; Chen, Chaoyin; Huang, Zaiqiang; Zhang, Chunmei; Liang, Pengjuan; Zhao, Shenglan

    2015-02-01

    Rhizoma Gastrodiae (Tianma) of different variants and different geographical origins has vital difference in quality and physiological efficacy. This paper focused on the classification and identification of Tianma of six types (two variants from three different geographical origins) using three dimensional synchronous fluorescence spectroscopy (3D-SFS) coupled with principal component analysis (PCA). 3D-SF spectra of aqueous extracts, which were obtained from Tianma of the six types, were measured by a LS-50B luminescence spectrofluorometer. The experimental results showed that the characteristic fluorescent spectral regions of the 3D-SF spectra were similar, while the intensities of characteristic regions are different significantly. Coupled these differences in peak intensities with PCA, Tianma of six types could be discriminated successfully. In conclusion, 3D-SFS coupled with PCA, which has such advantages as effective, specific, rapid, non-polluting, has an edge for discrimination of the similar Chinese herbal medicine. And the proposed methodology is a useful tool to classify and identify Tianma of different variants and different geographical origins.

  2. Effects of the LBV Primary's Mass-loss Rate on the 3D Hydrodynamics of eta Carinae's Colliding Winds

    NASA Technical Reports Server (NTRS)

    Madura, Thomas I.; Gull, Theodore R.; Cocoran, M.; Okazaki, A.; Owocki, S.; Russell, C.; Hamaguchi, K.; Clementel, N; Groh, J.; Hillier, D. J.

    2013-01-01

    At the heart of eta Carinae's spectacular "Homunculus" nebula lies an extremely luminous (L(sub Total) greater than approximately 5 × 10(exp 6) solar luminosity) colliding wind binary with a highly eccentric (e approximately 0.9), 5.54-year orbit (Figure 1). The primary of the system, a Luminous Blue Variable (LBV), is our closest (D approximately 2.3 kpc) and best example of a pre-hypernova or pre-gamma ray burst environment. The remarkably consistent and periodic RXTE X-ray light curve surprisingly showed a major change during the system's last periastron in 2009, with the X-ray minimum being approximately 50% shorter than the minima of the previous two cycles1. Between 1998 and 2011, the strengths of various broad stellar wind emission lines (e.g. Halpha, Fe II) in line-of-sight (l.o.s.) also decreased by factors of 1.5 - 3 relative to the continuum2. The current interpretation for these changes is that they are due to a gradual factor of 2 - 4 drop in the primary's mass-loss rate over the last approximately 15 years1, 2. However, while a secular change is seen for a direct view of the central source, little to no change is seen in profiles at high stellar latitudes or reflected off of the dense, circumbinary material known as the "Weigelt blobs"2, 3. Moreover, model spectra generated with CMFGEN predict that a factor of 2 - 4 drop in the primary's mass-loss rate should lead to huge changes in the observed spectrum, which thus far have not been seen. Here we present results from large- (plus or minus 1620 AU) and small- (plus or minus 162 AU) domain, full 3D smoothed particle hydrodynamics (SPH) simulations of eta Car's massive binary colliding winds for three different primary-star mass-loss rates (2.4, 4.8, and 8.5 × 10(exp -4) solar mass/yr). The goal is to investigate how the mass-loss rate affects the 3D geometry and dynamics of eta Car's optically-thick wind and spatially-extended wind-wind collision (WWC) regions, both of which are known sources of

  3. Experimental and numerical investigation into micro-flow cytometer with 3-D hydrodynamic focusing effect and micro-weir structure.

    PubMed

    Hou, Hui-Hsiung; Tsai, Chien-Hsiung; Fu, Lung-Ming; Yang, Ruey-Jen

    2009-07-01

    This study presents a novel 3-D hydrodynamic focusing technique for micro-flow cytometers. In the proposed approach, the sample stream is compressed initially in the horizontal direction by a set of sheath flows such that it is constrained to the central region of the microchannel and is then focused in the vertical direction by a second pair of sheath flows. Thereafter, the focused sample stream passes over a micro-weir structure positioned directly beneath an optical detection system to capture polystyrene beads fluorescent signal. The microchannel configuration and operational parameters are optimized by performing a series of numerical simulations. An experimental investigation is then performed using a micro-flow cytometer fabricated using conventional micro-electro-mechanical systems techniques and an isotropic wet etching method. The results indicate that the two sets of sheath flows successfully constrain the sample stream within a narrow, well-defined region of the microchannel. Furthermore, the micro-weir structure prompts the separation of a mixed sample of 5 and 10 microm polystyrene beads in the vertical direction and ensures that the beads flow through the detection region of the microchannel in a sequential fashion and can therefore be reliably detected and counted.

  4. Coupling Hydrodynamic and Wave Propagation Codes for Modeling of Seismic Waves recorded at the SPE Test.

    NASA Astrophysics Data System (ADS)

    Larmat, C. S.; Rougier, E.; Delorey, A.; Steedman, D. W.; Bradley, C. R.

    2016-12-01

    The goal of the Source Physics Experiment (SPE) is to bring empirical and theoretical advances to the problem of detection and identification of underground nuclear explosions. For this, the SPE program includes a strong modeling effort based on first principles calculations with the challenge to capture both the source and near-source processes and those taking place later in time as seismic waves propagate within complex 3D geologic environments. In this paper, we report on results of modeling that uses hydrodynamic simulation codes (Abaqus and CASH) coupled with a 3D full waveform propagation code, SPECFEM3D. For modeling the near source region, we employ a fully-coupled Euler-Lagrange (CEL) modeling capability with a new continuum-based visco-plastic fracture model for simulation of damage processes, called AZ_Frac. These capabilities produce high-fidelity models of various factors believed to be key in the generation of seismic waves: the explosion dynamics, a weak grout-filled borehole, the surrounding jointed rock, and damage creation and deformations happening around the source and the free surface. SPECFEM3D, based on the Spectral Element Method (SEM) is a direct numerical method for full wave modeling with mathematical accuracy. The coupling interface consists of a series of grid points of the SEM mesh situated inside of the hydrodynamic code's domain. Displacement time series at these points are computed using output data from CASH or Abaqus (by interpolation if needed) and fed into the time marching scheme of SPECFEM3D. We will present validation tests with the Sharpe's model and comparisons of waveforms modeled with Rg waves (2-8Hz) that were recorded up to 2 km for SPE. We especially show effects of the local topography, velocity structure and spallation. Our models predict smaller amplitudes of Rg waves for the first five SPE shots compared to pure elastic models such as Denny &Johnson (1991).

  5. 3-D GRMHD Simulations of Disk-Jet Coupling and Emission

    NASA Technical Reports Server (NTRS)

    Nishikawa, K.-I.; Mizuno, Y.; Fuerst, S.; zei. zl/; Watson, M.; Hardee, P.; Koide, S.; Fishman, G. J.

    2006-01-01

    We have performed a fully 3-D GRMHD simulation of jet formation from a thin accretion disk around a Schwarzschild black hole with a free-falling corona. The simulation results show that a bipolar jet is initially created. At later times, the accretion disk becomes thick and the jet fades resulting in a wind that is ejected from the surface of the thickened (torus-like) disk. This evolution of disk-jet coupling suggests that the jet fades with a thickened accretion disk. Recently we have developed two new codes: 3 -D GRMHD: RelAtivIStic magnetoHydrodynamica1 sImulatioN (RAISHIN) code constructed by modern high-resolution shock-capturing (HRSC) techniques and 3-D GRPIC code. We have calculated free-free and synchrotron emission from the disks and jet/outflows obtained from our GRMHD simulations using a fully covariant radiative transfer formulation.

  6. Nonlinear Generalized Hydrodynamic Wave Equations in Strongly Coupled Dusty Plasmas

    SciTech Connect

    Veeresha, B. M.; Sen, A.; Kaw, P. K.

    2008-09-07

    A set of nonlinear equations for the study of low frequency waves in a strongly coupled dusty plasma medium is derived using the phenomenological generalized hydrodynamic (GH) model and is used to study the modulational stability of dust acoustic waves to parallel perturbations. Dust compressibility contributions arising from strong Coulomb coupling effects are found to introduce significant modifications in the threshold and range of the instability domain.

  7. Quantification of avian embryonic cardiac outflow hemodynamics through 3D-0D coupling

    NASA Astrophysics Data System (ADS)

    Lindsey, Stephanie; Vignon-Clementel, Irene; Butcher, Jonathan

    2014-11-01

    Outflow malformations account for over 20% of CHDs in the US. While the etiology of these malformations is poorly understood, most can be traced back to perturbations in the patterning of the pharyngeal arch arteries (PAAs), the precursors to the great vessels. Here, we examine the effects of normal and aberrant PAA flow, through the use of two computational models. A 0D electric analog model allows for rapid computation and global tuning of the embryo's vasculature relative to the arches. A second 3D-0D model replaces the electric analog representation of the arches with a 3D reconstruction, thereby leading to more extensive pressure and flow characterization. We obtain 3D arch artery reconstructions from nano-CT stacks and couple them to 0D outlets. In contrast to standard boundary conditions, such coupling maintains the physiologically desired cranial-caudal flow split in control embryos and predicts how this will change with vessel occlusion. We use flow inputs from Doppler velocity tracings to compute 0D and 3D-0D pulsatile hemodynamic simulations in HH18 (day 3), HH24 (day 4), and HH26 (day 5) geometries. We then calculate flow distributions and wall shear stress maps for control embryos. From here, we modify HH18 geometries to simulate varying levels of PAA occlusion. Pulsatile simulations are run in each geometry and results compared to that of controls. Results serve as a basis for examining flow-mediated growth and adaptation in cardiac outflow morphogenesis.

  8. Laplace-domain waveform modeling and inversion for the 3D acoustic-elastic coupled media

    NASA Astrophysics Data System (ADS)

    Shin, Jungkyun; Shin, Changsoo; Calandra, Henri

    2016-06-01

    Laplace-domain waveform inversion reconstructs long-wavelength subsurface models by using the zero-frequency component of damped seismic signals. Despite the computational advantages of Laplace-domain waveform inversion over conventional frequency-domain waveform inversion, an acoustic assumption and an iterative matrix solver have been used to invert 3D marine datasets to mitigate the intensive computing cost. In this study, we develop a Laplace-domain waveform modeling and inversion algorithm for 3D acoustic-elastic coupled media by using a parallel sparse direct solver library (MUltifrontal Massively Parallel Solver, MUMPS). We precisely simulate a real marine environment by coupling the 3D acoustic and elastic wave equations with the proper boundary condition at the fluid-solid interface. In addition, we can extract the elastic properties of the Earth below the sea bottom from the recorded acoustic pressure datasets. As a matrix solver, the parallel sparse direct solver is used to factorize the non-symmetric impedance matrix in a distributed memory architecture and rapidly solve the wave field for a number of shots by using the lower and upper matrix factors. Using both synthetic datasets and real datasets obtained by a 3D wide azimuth survey, the long-wavelength component of the P-wave and S-wave velocity models is reconstructed and the proposed modeling and inversion algorithm are verified. A cluster of 80 CPU cores is used for this study.

  9. Influence of the Aral Sea negative water balance on its seasonal circulation patterns: use of a 3D hydrodynamic model

    NASA Astrophysics Data System (ADS)

    Sirjacobs, D.; Grégoire, M.; Delhez, E.; Nihoul, J. C. J.

    2004-06-01

    A 3D hydrodynamic model of the Aral Sea was successfully implemented to address the complex hydrodynamic changes induced by the combined effect of hydrologic and climatic change in the Aral region. The first barotropic numerical experiments allowed us to produce a comparative description of the mean general seasonal circulation patterns corresponding to the original situation (1956-1960) and of the average situation for the period from 1981 to 1985, a very low river flow period. The dominant anticyclonic circulation suggested by our seasonal simulation is in good agreement with previous investigations. In addition, this main anticyclonic gyre was shown to be stable and clearly established from February to September, while winter winds led to another circulation scenario. In winter, the main anticyclonic gyre was considerably limited, and cyclonic circulations appeared in the deep western basin and in the northeast of the shallow basin. In contrast, stronger anticyclonic circulation was observed in the Small Aral Sea during winter. As a consequence of the 10-m sea level drop observed between the two periods considered, the 1981-1985 simulation suggests an intensification of seasonal variability. Total water transport of the main gyre was reduced with sea level drop by a minimum of 30% in May and up to 54% in September. Before 1960, the study of the net flows through Berg and Kokaral Straits allowed us to evaluate the component of water exchange between the Small and the Large Seas linked with the general anticyclonic circulation around Kokaral Island. This exchange was lowest in summer (with a mean anticyclonic exchange of 222 m 3/s for July and August), highest in fall and winter (with a mean value of 1356 m 3/s from September to February) and briefly reversed in the spring (mean cyclonic circulation of 316 m 3/s for April and May). In summer, the water exchange due to local circulation at the scale of each strait was comparatively more important because net flows

  10. Constraints on decreases in η Carinae's mass-loss from 3D hydrodynamic simulations of its binary colliding winds

    NASA Astrophysics Data System (ADS)

    Madura, T. I.; Gull, T. R.; Okazaki, A. T.; Russell, C. M. P.; Owocki, S. P.; Groh, J. H.; Corcoran, M. F.; Hamaguchi, K.; Teodoro, M.

    2013-12-01

    Recent work suggests that the mass-loss rate of the primary star ηA in the massive colliding wind binary η Carinae dropped by a factor of 2-3 between 1999 and 2010. We present results from large- (±1545 au) and small- (±155 au) domain, 3D smoothed particle hydrodynamics (SPH) simulations of η Car's colliding winds for three ηA mass-loss rates (dot{M}_{η A}= 2.4, 4.8 and 8.5 × 10-4 M⊙ yr-1), investigating the effects on the dynamics of the binary wind-wind collision (WWC). These simulations include orbital motion, optically thin radiative cooling and radiative forces. We find that dot{M}_{η A} greatly affects the time-dependent hydrodynamics at all spatial scales investigated. The simulations also show that the post-shock wind of the companion star ηB switches from the adiabatic to the radiative-cooling regime during periastron passage (φ ≈ 0.985-1.02). This switchover starts later and ends earlier the lower the value of dot{M}_{η A} and is caused by the encroachment of the wind of ηA into the acceleration zone of ηB's wind, plus radiative inhibition of ηB's wind by ηA. The SPH simulations together with 1D radiative transfer models of ηA's spectra reveal that a factor of 2 or more drop in dot{M}_{η A} should lead to substantial changes in numerous multiwavelength observables. Recent observations are not fully consistent with the model predictions, indicating that any drop in dot{M}_{η A} was likely by a factor of ≲2 and occurred after 2004. We speculate that most of the recent observed changes in η Car are due to a small increase in the WWC opening angle that produces significant effects because our line of sight to the system lies close to the dense walls of the WWC zone. A modest decrease in dot{M}_{η A} may be responsible, but changes in the wind/stellar parameters of ηB, while less likely, cannot yet be fully ruled out. We suggest observations during η Car's next periastron in 2014 to further test for decreases in dot{M}_{η A}. If

  11. Constraints on Decreases in Eta Carinae's Mass-loss from 3D Hydrodynamic Simulations of Its Binary Colliding Winds

    NASA Technical Reports Server (NTRS)

    Madura, T. I.; Gull, T. R.; Okazaki, A. T.; Russell, C. M. P.; Owocki, S. P.; Groh, J. H.; Corcoran, M. F.; Hamaguchi, K.; Teodoro, M.

    2013-01-01

    Recent work suggests that the mass-loss rate of the primary star Eta-A in the massive colliding wind binary Eta Carinae dropped by a factor of 2-3 between 1999 and 2010. We present result from large- (+/- 1545 au) and small- (+/- 155 au) domain, 3D smoothed particle hydrodynamics (SPH) simulations of Eta Car's colliding winds for three Eta-A mass-loss rates ( (dot-M(sub Eta-A) = 2.4, 4.8 and 8.5 × 10(exp -4) M(solar)/ yr), investigating the effects on the dynamics of the binary wind-wind collision (WWC). These simulations include orbital motion, optically thin radiative cooling and radiative forces. We find that dot-M Eta-A greatly affects the time-dependent hydrodynamics at all spatial scales investigated. The simulations also show that the post-shock wind of the companion star Eta-B switches from the adiabatic to the radiative-cooling regime during periastron passage (Phi approx.= 0.985-1.02). This switchover starts later and ends earlier the lower the value of dot-M Eta-A and is caused by the encroachment of the wind of Eta-A into the acceleration zone of Eta-B's wind, plus radiative inhibition of Eta-B's wind by Eta-A. The SPH simulations together with 1D radiative transfer models of Eta-A's spectra reveal that a factor of 2 or more drop in dot-M EtaA should lead to substantial changes in numerous multiwavelength observables. Recent observations are not fully consistent with the model predictions, indicating that any drop in dot- M Eta-A was likely by a factor of approx. < 2 and occurred after 2004. We speculate that most of the recent observed changes in Eta Car are due to a small increase in the WWC opening angle that produces significant effects because our line of sight to the system lies close to the dense walls of the WWC zone. A modest decrease in dot-M Eta-A may be responsible, but changes in the wind/stellar parameter of Eta-B, while less likely, cannot yet be fully ruled out. We suggest observations during Eta-Car's next periastron in 2014 to further

  12. RF study and 3-D simulations of a side-coupling thermionic RF-gun

    NASA Astrophysics Data System (ADS)

    Rimjaem, S.; Kusoljariyakul, K.; Thongbai, C.

    2014-02-01

    A thermionic RF-gun for generating ultra-short electron bunches was optimized, developed and used as a source at a linac-based THz radiation research laboratory of the Plasma and Beam Physics Research Facility, Chiang Mai University, Thailand. The RF-gun is a π/2-mode standing wave structure, which consists of two S-band accelerating cells and a side-coupling cavity. The 2856 MHz RF wave is supplied from an S-band klystron to the gun through the waveguide input-port at the cylindrical wall of the second cell. A fraction of the RF power is coupled from the second cell to the first one via a side-coupling cavity. Both the waveguide input-port and the side-coupling cavity lead to an asymmetric geometry of the gun. RF properties and electromagnetic field distributions inside the RF-gun were studied and numerically simulated by using computer codes SUPERFISH 7.19 and CST Microwave Studio 2012©. RF characterizations and tunings of the RF-gun were performed to ensure the reliability of the gun operation. The results from 3D simulations and measurements are compared and discussed in this paper. The influence of asymmetric field distributions inside the RF-gun on the electron beam properties was investigated via 3D beam dynamics simulations. A change in the coupling-plane of the side-coupling cavity is suggested to improve the gun performance.

  13. Peach Bottom 2 Turbine Trip Simulation Using TRAC-BF1/COS3D, a Best-Estimate Coupled 3-D Core and Thermal-Hydraulic Code System

    SciTech Connect

    Ui, Atsushi; Miyaji, Takamasa

    2004-10-15

    The best-estimate coupled three-dimensional (3-D) core and thermal-hydraulic code system TRAC-BF1/COS3D has been developed. COS3D, based on a modified one-group neutronic model, is a 3-D core simulator used for licensing analyses and core management of commercial boiling water reactor (BWR) plants in Japan. TRAC-BF1 is a plant simulator based on a two-fluid model. TRAC-BF1/COS3D is a coupled system of both codes, which are connected using a parallel computing tool. This code system was applied to the OECD/NRC BWR Turbine Trip Benchmark. Since the two-group cross-section tables are provided by the benchmark team, COS3D was modified to apply to this specification. Three best-estimate scenarios and four hypothetical scenarios were calculated using this code system. In the best-estimate scenario, the predicted core power with TRAC-BF1/COS3D is slightly underestimated compared with the measured data. The reason seems to be a slight difference in the core boundary conditions, that is, pressure changes and the core inlet flow distribution, because the peak in this analysis is sensitive to them. However, the results of this benchmark analysis show that TRAC-BF1/COS3D gives good precision for the prediction of the actual BWR transient behavior on the whole. Furthermore, the results with the modified one-group model and the two-group model were compared to verify the application of the modified one-group model to this benchmark. This comparison shows that the results of the modified one-group model are appropriate and sufficiently precise.

  14. Dynamical behavior of hydrodynamic Lyapunov modes in coupled map lattices.

    PubMed

    Yang, Hong-liu; Radons, Günter

    2006-01-01

    In our previous study of hydrodynamic Lyapunov modes (HLMs) in coupled map lattices, we found that there are two classes of systems with different lambda-k dispersion relations. For coupled circle maps we found the quadratic dispersion relations lambda approximately k2 and lambda approximately k for coupled standard maps. Here, we carry out further numerical experiments to investigate the dynamic Lyapunov vector (LV) structure factor which can provide additional information on the Lyapunov vector dynamics. The dynamic LV structure factor of coupled circle maps is found to have a single peak at omega=0 and can be well approximated by a single Lorentzian curve. This implies that the hydrodynamic Lyapunov modes in coupled circle maps are nonpropagating and show only diffusive motion. In contrast, the dynamic LV structure factor of coupled standard maps possesses two visible sharp peaks located symmetrically at +/- omega. The spectrum can be well approximated by the superposition of three Lorentzian curves centered at omega=0 and +/-omegau, respectively. In addition, the omega-k dispersion relation takes the form omegau=cuk for k --> 2pi/L. These facts suggest that the hydrodynamic Lyapunov modes in coupled standard maps are propagating. The HLMs in the two classes of systems are shown to have different dynamical behavior besides their difference in spatial structure. Moreover, our simulations demonstrate that adding damping to coupled standard maps turns the propagating modes into diffusive ones alongside a change of the lambda-k dispersion relation from lambda approximately k to lambda approximately k2. In cases of weak damping, there is a crossover in the dynamic LV structure factors; i.e., the spectra with smaller k are akin to those of coupled circle maps while the spectra with larger k are similar to those of coupled standard maps.

  15. NDE of a 3-D surface crack using closely coupled probes for DCPD technique

    SciTech Connect

    Saka, M.; Abe, H.; Hirota, D.; Komura, I.

    1998-11-01

    A procedure of applying the d-c potential drop technique using the closely coupled probes to NDE of a 3-D surface crack is newly developed. The calibration equation for three sensors which differ in the distance between the probes is derived. Experiments validated the use of the calibration equation for the NDE of cracks. The method to use the three sensors properly based on the measuring sensitivity is shown.

  16. 3D Hydrodynamic Simulations with Yguazú-A Code to Model a Jet in a Galaxy Cluster

    NASA Astrophysics Data System (ADS)

    Haro-Corzo, S. A. R.; Velazquez, P.; Diaz, A.

    2009-05-01

    We present preliminary results for a galaxy's jet expanding into an intra-cluster medium (ICM). We attempt to model the jet-gas interaction and the evolution of a extragalactic collimated jet placed at center of computational grid, which it is modeled as a cylinder ejecting gas in the z-axis direction with fixed velocity. It has precession motion around z-axis (period of 10^5 sec.) and orbital motion in XY-plane (period of 500 yr.). This jet is embedded in the ICM, which is modeled as surrounding wind in the XZ plane. We carried out 3D hydrodynamical simulations using Yguazú-A code. This simulation do not include radiative losses. In order to compare the numerical results with observations, we generated synthetic X-ray emission images. X-ray observations with high-resolution of rich cluster of galaxies show diffuse emission with filamentary structure (sometimes called as cooling flow or X-ray filament). Radio observations show a jet-like emission of the central region of the cluster. Joining these observations, in this work we explore the possibility that the jet-ambient gas interaction leads to a filamentary morphology in the X-ray domain. We have found that simulation considering orbital motion offers the possibility to explain the diffuse emission observed in the X-ray domain. The circular orbital motion, additional to precession motion, contribute to disperse the shocked gas and the X-ray appearance of the 3D simulation reproduce some important details of Abel 1795 X-ray emission (Rodriguez-Martinez et al. 2006, A&A, 448, 15): A bright bow-shock at north (spot), where interact directly the jet and the ICM and which is observed in the X-ray image. Meanwhile, in the south side there is no bow-shock X-ray emission, but the wake appears as a X-ray source. This wake is part of the diffuse shocked ambient gas region.

  17. Global 3D radiation-hydrodynamics models of AGB stars. Effects of convection and radial pulsations on atmospheric structures

    NASA Astrophysics Data System (ADS)

    Freytag, B.; Liljegren, S.; Höfner, S.

    2017-04-01

    Context. Observations of asymptotic giant branch (AGB) stars with increasing spatial resolution reveal new layers of complexity of atmospheric processes on a variety of scales. Aims: To analyze the physical mechanisms that cause asymmetries and surface structures in observed images, we use detailed 3D dynamical simulations of AGB stars; these simulations self-consistently describe convection and pulsations. Methods: We used the CO5BOLD radiation-hydrodynamics code to produce an exploratory grid of global "star-in-a-box" models of the outer convective envelope and the inner atmosphere of AGB stars to study convection, pulsations, and shock waves and their dependence on stellar and numerical parameters. Results: The model dynamics are governed by the interaction of long-lasting giant convection cells, short-lived surface granules, and strong, radial, fundamental-mode pulsations. Radial pulsations and shorter wavelength, traveling, acoustic waves induce shocks on various scales in the atmosphere. Convection, waves, and shocks all contribute to the dynamical pressure and, thus, to an increase of the stellar radius and to a levitation of material into layers where dust can form. Consequently, the resulting relation of pulsation period and stellar radius is shifted toward larger radii compared to that of non-linear 1D models. The dependence of pulsation period on luminosity agrees well with observed relations. The interaction of the pulsation mode with the non-stationary convective flow causes occasional amplitude changes and phase shifts. The regularity of the pulsations decreases with decreasing gravity as the relative size of convection cells increases. The model stars do not have a well-defined surface. Instead, the light is emitted from a very extended inhomogeneous atmosphere with a complex dynamic pattern of high-contrast features. Conclusions: Our models self-consistently describe convection, convectively generated acoustic noise, fundamental-mode radial

  18. Estimation of environmental capacity of phosphorus in Gorgan Bay, Iran, via a 3D ecological-hydrodynamic model.

    PubMed

    Ranjbar, Mohammad Hassan; Hadjizadeh Zaker, Nasser

    2016-11-01

    Gorgan Bay is a semi-enclosed basin located in the southeast of the Caspian Sea in Iran and is an important marine habitat for fish and seabirds. In the present study, the environmental capacity of phosphorus in Gorgan Bay was estimated using a 3D ecological-hydrodynamic numerical model and a linear programming model. The distribution of phosphorus, simulated by the numerical model, was used as an index for the occurrence of eutrophication and to determine the water quality response field of each of the pollution sources. The linear programming model was used to calculate and allocate the total maximum allowable loads of phosphorus to each of the pollution sources in a way that eutrophication be prevented and at the same time maximum environmental capacity be achieved. In addition, the effect of an artificial inlet on the environmental capacity of the bay was investigated. Observations of surface currents in Gorgan Bay were made by GPS-tracked surface drifters to provide data for calibration and verification of numerical modeling. Drifters were deployed at five different points across the bay over a period of 5 days. The results indicated that the annual environmental capacity of phosphorus is approximately 141 t if a concentration of 0.0477 mg/l for phosphorus is set as the water quality criterion. Creating an artificial inlet with a width of 1 km in the western part of the bay would result in a threefold increase in the environmental capacity of the study area.

  19. Modelling of river plume dynamics in Öre estuary (Baltic Sea) with Telemac-3D hydrodynamic model

    NASA Astrophysics Data System (ADS)

    Sokolov, Alexander

    2016-04-01

    The main property of river plumes is their buoyancy, fresh water discharged by rivers is less dense than the receiving, saline waters. To study the processes of plume formation in case of river discharge into a brackish estuary where salinity is low (3.5 - 5 psu) a three dimensional hydrodynamic model was applied to the Öre estuary in the Baltic Sea. This estuary is a small fjord-like bay in the north part of the Baltic Sea. Size of the bay is about 8 by 8 km with maximum depth of 35 metres. River Öre has a small average freshwater discharge of 35 m3/s. But in spring during snowmelt the discharge can be many times higher. For example, in April 2015 the discharge increased from 8 m3/s to 160 m3/s in 18 days. To study river plume dynamics a finite element based three dimensional baroclinic model TELEMAC - 3D is used. The TELEMAC modelling suite is developed by the National Laboratory of Hydraulics and Environment (LNHE) of Electricité de France (EDF). Modelling domain was approximated by an unstructured mesh with element size varies from 50 to 500 m. In vertical direction a sigma-coordinate with 20 layers was used. Open sea boundary conditions were obtained from the Baltic Sea model HIROMB-BOOS using COPERNICUS marine environment monitoring service. Comparison of modelling results with observations obtained by BONUS COCOA project's field campaign in Öre estuary in 2015 shows that the model plausible simulate river plume dynamics. Modelling of age of freshwater is also discussed. This work resulted from the BONUS COCOA project was supported by BONUS (Art 185), funded jointly by the EU and the Swedish Research Council Formas.

  20. 3D printing scaffold coupled with low level light therapy for neural tissue regeneration.

    PubMed

    Zhu, Wei; George, Jonathan; Sorger, Volker; Zhang, Lijie

    2017-03-28

    3D printing has shown promise for neural regeneration by providing customized nerve scaffolds to structurally support and bridge the defect gap as well as deliver cells or various bioactive substances. Low-level light therapy (LLLT) exhibits positive effects on rehabiliation of degenerative nerves and neural disorders. With this in mind, we postulate that 3D printed neural scaffold coupling with LLLT will generate a new strategy to repair neural degeneration. To achieve this goal, we applied red laser light to stimualte neural stem cells on 3D printed scaffolds and investigated the subsequent cell response with respect to cell proliferation and differentiation. Here we show that cell prolifeartion rate and intracellular reactive oxgen species synthesis were significantly increased after 15 s laser stimulation follwed by 1 day culture. Over culturing time of 14 day in vitro, the laser stimulation promoted neuronal differentiation of neural stem cells, while the glial differentiation was suppressed based on results of both immunocytochemistry studies and real-time quantitative reverse transcription polymerase chain reaction testing. These findings suggest that integration of 3D printing and LLLT might provide a powerful methodology for neural tissue engineering.

  1. 3D neutronic codes coupled with thermal-hydraulic system codes for PWR, and BWR and VVER reactors

    SciTech Connect

    Langenbuch, S.; Velkov, K.; Lizorkin, M.

    1997-07-01

    This paper describes the objectives of code development for coupling 3D neutronics codes with thermal-hydraulic system codes. The present status of coupling ATHLET with three 3D neutronics codes for VVER- and LWR-reactors is presented. After describing the basic features of the 3D neutronic codes BIPR-8 from Kurchatov-Institute, DYN3D from Research Center Rossendorf and QUABOX/CUBBOX from GRS, first applications of coupled codes for different transient and accident scenarios are presented. The need of further investigations is discussed.

  2. Progress and challenges in coupled hydrodynamic-ecological estuarine modeling

    PubMed Central

    Ganju, Neil K.; Brush, Mark J.; Rashleigh, Brenda; Aretxabaleta, Alfredo L.; del Barrio, Pilar; Grear, Jason S.; Harris, Lora A.; Lake, Samuel J.; McCardell, Grant; O’Donnell, James; Ralston, David K.; Signell, Richard P.; Testa, Jeremy M.; Vaudrey, Jamie M.P.

    2016-01-01

    Numerical modeling has emerged over the last several decades as a widely accepted tool for investigations in environmental sciences. In estuarine research, hydrodynamic and ecological models have moved along parallel tracks with regard to complexity, refinement, computational power, and incorporation of uncertainty. Coupled hydrodynamic-ecological models have been used to assess ecosystem processes and interactions, simulate future scenarios, and evaluate remedial actions in response to eutrophication, habitat loss, and freshwater diversion. The need to couple hydrodynamic and ecological models to address research and management questions is clear, because dynamic feedbacks between biotic and physical processes are critical interactions within ecosystems. In this review we present historical and modern perspectives on estuarine hydrodynamic and ecological modeling, consider model limitations, and address aspects of model linkage, skill assessment, and complexity. We discuss the balance between spatial and temporal resolution and present examples using different spatiotemporal scales. Finally, we recommend future lines of inquiry, approaches to balance complexity and uncertainty, and model transparency and utility. It is idealistic to think we can pursue a “theory of everything” for estuarine models, but recent advances suggest that models for both scientific investigations and management applications will continue to improve in terms of realism, precision, and accuracy. PMID:27721675

  3. User Guide for the R5EXEC Coupling Interface in the RELAP5-3D Code

    SciTech Connect

    Forsmann, J. Hope; Weaver, Walter L.

    2015-04-01

    This report describes the R5EXEC coupling interface in the RELAP5-3D computer code from the users perspective. The information in the report is intended for users who want to couple RELAP5-3D to other thermal-hydraulic, neutron kinetics, or control system simulation codes.

  4. Optically coupled 3D common memory with GaAs on Si structure

    NASA Astrophysics Data System (ADS)

    Hirose, M.; Takata, H.; Koyanagi, M.

    1991-02-01

    An ultra fast data transfer speed is demonstrated for a novel three-dimensional (3D) Static Random Access Memory (SRAM) consisting of multilayer silicon LSI chips on which GaAs LEDs and photodetectors are monolithically integrated for vertical optical interconnections. A unique feature of this system is the capability of parallel data transfer from one memory layer to the upper and lower memory layers by the optical interconnections. The results of static and dynamic simulations of the optically coupled 3D common memory have indicated that a block of 512 bits data can be transferred through four memory layers within 16 nsec. This is an equivalent data transfer speed of 128 Gbits/sec/layer.

  5. 3D modelling of coupled mass and heat transfer of a convection-oven roasting process.

    PubMed

    Feyissa, Aberham Hailu; Gernaey, Krist V; Adler-Nissen, Jens

    2013-04-01

    A 3D mathematical model of coupled heat and mass transfer describing oven roasting of meat has been developed from first principles. The proposed mechanism for the mass transfer of water is modified and based on a critical literature review of the effect of heat on meat. The model equations are based on a conservation of mass and energy, coupled through Darcy's equations of porous media - the water flow is mainly pressure-driven. The developed model together with theoretical and experimental assessments were used to explain the heat and water transport and the effect of the change in microstructure (permeability, water binding capacity and elastic modulus) that occur during the meat roasting process. The developed coupled partial differential equations were solved by using COMSOL Multiphysics®3.5 and state variables are predicted as functions of both position and time. The proposed mechanism was partially validated by experiments in a convection oven where temperatures were measured online.

  6. Active vibration control for structural-acoustic coupling system of a 3-D vehicle cabin model

    NASA Astrophysics Data System (ADS)

    Song, Chul Ki; Hwang, Jin Kwon; Lee, Jang Moo; Hedrick, J. Karl

    2003-10-01

    This paper presents an active vibration control system for use with structural-acoustic coupling system using piezoelectric actuators and piezoelectric sensors. For modelling a complicated 3-D vehicle cabin model, the structural-acoustic coupling system is analyzed by combining the structural data from modal testing with the acoustic data from the finite element method. Through the structural-acoustic analysis program, the control plate and the control modes are selected, which are most effective for attenuating its noise. A robust LQG controller with two sensor signal filters is designed to remove the experimental problems such as the spillover effect due to uncontrolled modes. The robust LQG controller for the structural-acoustic coupling system can reduce the interior noise of the cavity as well as the structural vibration of the cabin.

  7. Observations and 3D hydrodynamics-based modeling of decadal-scale shoreline change along the Outer Banks, North Carolina

    USGS Publications Warehouse

    Safak, Ilgar; List, Jeffrey; Warner, John C.; Kumar, Nirnimesh

    2017-01-01

    Long-term decadal-scale shoreline change is an important parameter for quantifying the stability of coastal systems. The decadal-scale coastal change is controlled by processes that occur on short time scales (such as storms) and long-term processes (such as prevailing waves). The ability to predict decadal-scale shoreline change is not well established and the fundamental physical processes controlling this change are not well understood. Here we investigate the processes that create large-scale long-term shoreline change along the Outer Banks of North Carolina, an uninterrupted 60 km stretch of coastline, using both observations and a numerical modeling approach. Shoreline positions for a 24-yr period were derived from aerial photographs of the Outer Banks. Analysis of the shoreline position data showed that, although variable, the shoreline eroded an average of 1.5 m/yr throughout this period. The modeling approach uses a three-dimensional hydrodynamics-based numerical model coupled to a spectral wave model and simulates the full 24-yr time period on a spatial grid running on a short (second scale) time-step to compute the sediment transport patterns. The observations and the model results show similar magnitudes (O(105 m3/yr)) and patterns of alongshore sediment fluxes. Both the observed and the modeled alongshore sediment transport rates have more rapid changes at the north of our section due to continuously curving coastline, and possible effects of alongshore variations in shelf bathymetry. The southern section with a relatively uniform orientation, on the other hand, has less rapid transport rate changes. Alongshore gradients of the modeled sediment fluxes are translated into shoreline change rates that have agreement in some locations but vary in others. Differences between observations and model results are potentially influenced by geologic framework processes not included in the model. Both the observations and the model results show higher rates of

  8. Radiation Coupling with the FUN3D Unstructured-Grid CFD Code

    NASA Technical Reports Server (NTRS)

    Wood, William A.

    2012-01-01

    The HARA radiation code is fully-coupled to the FUN3D unstructured-grid CFD code for the purpose of simulating high-energy hypersonic flows. The radiation energy source terms and surface heat transfer, under the tangent slab approximation, are included within the fluid dynamic ow solver. The Fire II flight test, at the Mach-31 1643-second trajectory point, is used as a demonstration case. Comparisons are made with an existing structured-grid capability, the LAURA/HARA coupling. The radiative surface heat transfer rates from the present approach match the benchmark values within 6%. Although radiation coupling is the focus of the present work, convective surface heat transfer rates are also reported, and are seen to vary depending upon the choice of mesh connectivity and FUN3D ux reconstruction algorithm. On a tetrahedral-element mesh the convective heating matches the benchmark at the stagnation point, but under-predicts by 15% on the Fire II shoulder. Conversely, on a mixed-element mesh the convective heating over-predicts at the stagnation point by 20%, but matches the benchmark away from the stagnation region.

  9. Coupling frontal photopolymerization and surface instabilities for a novel 3D patterning technology

    NASA Astrophysics Data System (ADS)

    Vitale, Alessandra; Hennessy, Matthew; Matar, Omar; Douglas, Jack; Cabral, João

    2015-03-01

    Patterning of soft matter provides an exceptional route for the generation of micro/nanostructured and functional surfaces. We describe a new 3D fabrication process based on coupling frontal photopolymerization (FPP) with precisely controlled, yet spontaneous, interfacial wrinkling. FPP is a complex spatio-temporal process that can lead to well-defined propagating fronts of network formation, both stable and unstable. We investigate this process focusing on the interfacial monomer-to-polymer conversion profile and its wave propagation. A simple coarse-grained model is found to describe remarkably well the planar frontal logarithmic kinetics, capturing the effects of UV light exposure time (or dose) and temperature, as well as the front position. In defined conditions, surface instabilities are introduced and interfere with wave planarity, resulting in the formation of ``minimal'' surfaces with complex 3D geometries. Building on this understanding on the propagation of wavefronts of network formation during photopolymerization, we demonstrate the design and fabrication of 3D patterned polymer materials with tunable shapes with optical and surface functionality.

  10. 3-D carotid multi-region MRI segmentation by globally optimal evolution of coupled surfaces.

    PubMed

    Ukwatta, Eranga; Yuan, Jing; Rajchl, Martin; Qiu, Wu; Tessier, David; Fenster, Aaron

    2013-04-01

    In this paper, we propose a novel global optimization based 3-D multi-region segmentation algorithm for T1-weighted black-blood carotid magnetic resonance (MR) images. The proposed algorithm partitions a 3-D carotid MR image into three regions: wall, lumen, and background. The algorithm performs such partitioning by simultaneously evolving two coupled 3-D surfaces of carotid artery adventitia boundary (AB) and lumen-intima boundary (LIB) while preserving their anatomical inter-surface consistency such that the LIB is always located within the AB. In particular, we show that the proposed algorithm results in a fully time implicit scheme that propagates the two linearly ordered surfaces of the AB and LIB to their globally optimal positions during each discrete time frame by convex relaxation. In this regard, we introduce the continuous max-flow model and prove its duality/equivalence to the convex relaxed optimization problem with respect to each evolution step. We then propose a fully parallelized continuous max-flow-based algorithm, which can be readily implemented on a GPU to achieve high computational efficiency. Extensive experiments, with four users using 12 3T MR and 26 1.5T MR images, demonstrate that the proposed algorithm yields high accuracy and low operator variability in computing vessel wall volume. In addition, we show the algorithm outperforms previous methods in terms of high computational efficiency and robustness with fewer user interactions.

  11. Coupled thermal/chemical/mechanical modeling of energetic materials in ALE3D

    SciTech Connect

    Nichols, A.L.; Couch, R.; Maltby, J.D.; McCallen, R.C.; Otero, I.; Sharp, R.

    1996-10-01

    We must improve our ability to model the response of energetic ma@ to thmnal stimuli and the processes involved m the energetic response. Traditionally, the analyses of energeuc have mvolved coupled thermal chemical reaction codes. This provides only a reasonable estimate of the dw and location of ensuing rapid reaction. To predict the violence of the reaction, the m cal motion must be included in the wide range of time scales as with the th@ hazard. Ile ALE3D code has been modified to the hazards associated with heaung energetic ma@ in weapons. We have merged the thermal models from TOPAZ3D and the chemistry models &vel@ in Chemical TOPAZ into ALE3D. We have developed and use an impMt time step option to efficiently and accurately compute the hours that the energetic material can take to react. Since on these longer fim scales materials can be expected to have signifimt motion, it is even more important to provide high- ordcr advection for all components, including the chemical species. We will show an example cook-off problem to illustrate these capabilities.

  12. Vascular stents: Coupling full 3-D with reduced-order structural models

    NASA Astrophysics Data System (ADS)

    Avdeev, I.; Shams, M.

    2010-06-01

    Self-expanding nitinol stents are used to treat peripheral arterial disease. The peripheral arteries are subjected to a combination of mechanical forces such as compression, torsion, bending, and contraction. Most commercially available peripheral self-expanding stents are composed of a series of sub-millimeter V-shaped struts, which are laser-cut from a nitinol tube and surface-treated for better fatigue performance. The numerical stent models must accurately predict location and distribution of local stresses and strains caused by large arterial deformations. Full 3-D finite element non-linear analysis of an entire stent is computationally expensive to the point of being prohibitive, especially for longer stents. Reduced-order models based on beam or shell elements are fairly accurate in capturing global deformations, but are not very helpful in predicting stent failure. We propose a mixed approach that combines the full 3-D model and reduced-order models. Several global-local, full 3-D/reduced-order finite element models of a peripheral self-expanding stent were validated and compared with experimental data. The kinematic constraint method used to couple various elements together was found to be very efficient and easily applicable to commercial FEA codes. The proposed mixed models can be used to accurately predict stent failure based on realistic (patient-specific), non-linear kinematic behavior of peripheral arteries.

  13. An Integrated RELAP5-3D and Multiphase CFD Code System Utilizing a Semi Implicit Coupling Technique

    SciTech Connect

    D.L. Aumiller; E.T. Tomlinson; W.L. Weaver

    2001-06-21

    An integrated code system consisting of RELAP5-3D and a multiphase CFD program has been created through the use of a generic semi-implicit coupling algorithm. Unlike previous CFD coupling work, this coupling scheme is numerically stable provided the material Courant limit is not violated in RELAP5-3D or at the coupling locations. The basis for the coupling scheme and details regarding the unique features associated with the application of this technique to a four-field CFD program are presented. Finally, the results of a verification problem are presented. The coupled code system is shown to yield accurate and numerically stable results.

  14. Particle Acceleration in the Low Corona Over Broad Longitudes: Coupling MHD and 3D Particle Simulations

    NASA Astrophysics Data System (ADS)

    Gorby, M.; Schwadron, N.; Torok, T.; Downs, C.; Lionello, R.; Linker, J.; Titov, V. S.; Mikic, Z.; Riley, P.; Desai, M. I.; Dayeh, M. A.

    2014-12-01

    Recent work on the coupling between the Energetic Particle Radiation Environment Module (EPREM, a 3D energetic particle model) and Magnetohydrodynamics Around a Sphere (MAS, an MHD code developed at Predictive Science, Inc.) has demonstrated the efficacy of compression regions around fast coronal mass ejections (CMEs) for particle acceleration low in the corona (˜ 3 - 6 solar radii). These couplings show rapid particle acceleration over a broad longitudinal extent (˜ 80 degrees) resulting from the pile-up of magnetic flux in the compression regions and their subsequent expansion. The challenge for forming large SEP events in such compression-acceleration scenarios is to have enhanced scattering within the acceleration region while also allowing for efficient escape of accelerated particles downstream (away from the Sun) from the compression region. We present here the most recent simulation results including energetic particle and CME plasma profiles, the subsequent flux and dosages at 1AU, and an analysis of the compressional regions as efficient accelerators.

  15. Room temperature strong light-matter coupling in 3D THz meta-atoms (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Paulillo, Bruno; Manceau, Jean-Michel; Li, Lianhe; Linfield, Edmund; Colombelli, Raffaele

    2016-04-01

    We demonstrate strong light-matter coupling at room temperature in the terahertz (THz) spectral region using 3D meta-atoms with extremely sub-wavelength volumes. Using an air-bridge fabrication scheme, we have implemented sub-wavelength 3D THz micro-resonators that rely on suspended loop antennas connected to semiconductor-filled patch cavities. We have experimentally shown that they possess the functionalities of lumped LC resonators: their frequency response can be adjusted by independently tuning the inductance associated the antenna element or the capacitance provided by the metal-semiconductor-metal cavity. Moreover, the radiation coupling and efficiency can be engineered acting on the design of the loop antenna, similarly to conventional RF antennas. Here we take advantage of this rich playground in the context of cavity electrodynamics/intersubband polaritonics. In the strong light-matter coupling regime, a cavity and a two-level system exchange energy coherently at a characteristic rate called the vacuum Rabi frequency ΩR which is dominant with respect to all other loss mechanisms involved. The signature, in the frequency domain, is the appearance of a splitting between the bare cavity and material system resonances: the new states are called upper and a lower polariton branches. So far, most experimental demonstrations of strong light-matter interaction between an intersubband transition and a deeply sub-wavelength mode in the THz or mid-infrared ranges rely on wavelength-scale or larger resonators such as photonic crystals, diffractive gratings, dielectric micro-cavities or patch cavities. Lately, planar metamaterials have been used to enhance the light-matter interaction and strongly reduce the interaction volume by engineering the electric and magnetic resonances of the individual subwavelength constituents. In this contribution we provide evidence of strong coupling between a THz intersubband transition and an extremely sub-wavelength mode (≈λ/10

  16. Influence of the Aral Sea negative water balance on its seasonal circulation and ventilation patterns: use of a 3d hydrodynamic model.

    NASA Astrophysics Data System (ADS)

    Sirjacobs, D.; Grégoire, M.; Delhez, E.; Nihoul, J.

    2003-04-01

    Within the context of the EU INCO-COPERNICUS program "Desertification in the Aral Sea Region: A study of the Natural and Anthropogenic Impacts" (Contract IAC2-CT-2000-10023), a large-scale 3D hydrodynamic model was adapted to address specifically the macroscale processes affecting the Aral Sea water circulation and ventilation. The particular goal of this research is to simulate the effect of lasting negative water balance on the 3D seasonal circulation, temperature, salinity and water-mixing fields of the Aral Sea. The original Aral Sea seasonal hydrodynamism is simulated with the average seasonal forcings corresponding to the period from 1956 to 1960. This first investigation concerns a period of relative stability of the water balance, before the beginning of the drying process. The consequences of the drying process on the hydrodynamic of the Sea will be studied by comparing this first results with the simulation representing the average situation for the years 1981 to 1985, a very low river flow period. For both simulation periods, the forcing considered are the seasonal fluctuations of wind fields, precipitation, evaporation, river discharge and salinity, cloud cover, air temperature and humidity. The meteorological forcings were adapted to the common optimum one-month temporal resolution of the available data sets. Monthly mean kinetic energy flux and surface tensions were calculated from daily ECMWF wind data. Monthly in situ precipitation, surface air temperature and humidity fields were interpolated from data obtained from the Russian Hydrological and Meteorological Institute. Monthly water discharge and average salinity of the river water were considered for both Amu Darya and Syr Darya river over each simulation periods. The water mass conservation routines allowed the simulation of a changing coastline by taking into account local drying and flooding events of particular grid points. Preliminary barotropic runs were realised (for the 1951

  17. Formulation, stability and application of a semi-coupled 3-D four-field algorithm

    SciTech Connect

    Kunz, R.F.; Siebert, B.W.; Cope, W.K.; Foster, N.F.; Antal, S.P.; Ettorre, S.M.

    1996-06-01

    A new 3-D four-field algorithm has been developed to predict general two-phase flows. Ensemble averaged transport equations of mass, momentum, energy and turbulence transport are solved for each field (continuous liquid, continuous vapor, disperse liquid, disperse vapor). This four-field structure allows for analysis of adiabatic and boiling systems which contain flow regimes from bubbly through annular. Interfacial mass, momentum, turbulence and heat transfer models provide coupling between phases. A new semi-coupled implicit method is utilized to solve the set of 25 equations which arise in the formulation. In this paper, three important component numerical strategies employed in the method are summarized. These include: (1) incorporation of interfacial momentum force terms in the control volume face flux reconstruction, (2) phase coupling at the linear solver level, and in the pressure-velocity coupling itself and (3) a multi-step Jacobi block correction scheme for efficient solution of the pressure-Poisson equation. The necessity/effectiveness of these strategies is demonstrated in applications to realistic engineering flows. Though some heated flow test cases are considered, the particular numerics discussed here are germane to adiabatic flows with and without mass transfer.

  18. Studies of coupled cavity LINAC (CCL) accelerating structures with 3-D codes

    SciTech Connect

    Spalek, G.

    2000-08-01

    The cw CCL being designed for the Accelerator Production of Tritium (APT) project accelerates protons from 96 MeV to 211 MeV. It consists of 99 segments each containing up to seven accelerating cavities. Segments are coupled by intersegment coupling cavities and grouped into supermodules. The design method needs to address not only basic cavity sizing for a given coupling and pi/2 mode frequency, but also the effects of high power densities on the cavity frequency, mechanical stresses, and the structure's stop band during operation. On the APT project, 3-D RF (Ansoft Corp.'s HFSS) and coupled RF/structural (Ansys Inc.'s ANSYS) codes are being used. to develop tools to address the above issues and guide cooling channel design. The code's predictions are being checked against available low power Aluminum models. Stop band behavior under power will be checked once the tools are extended to CCDTL structures that have been tested at high power. A summary of calculations made to date and agreement with measured results will be presented.

  19. 3D integration of photonic crystal devices: vertical coupling with a silicon waveguide.

    PubMed

    Ferrier, L; Romeo, P Rojo; Letartre, X; Drouard, E; Viktorovitch, P

    2010-07-19

    Two integrated devices based on the vertical coupling between a photonic crystal microcavity and a silicon (Si) ridge waveguide are presented in this paper. When the resonator is coupled to a single waveguide, light can be spectrally extracted from the waveguide to free space through the far field emission of the resonator. When the resonator is vertically coupled to two waveguides, a vertical add-drop filter can be realized. The dropping efficiency of these devices relies on a careful design of the resonator. In this paper, we use a Fabry-Perot (FP) microcavity composed of two photonic crystal (PhC) slab mirrors. Thanks to the unique dispersion properties of slow Bloch modes (SBM) at the flat extreme of the dispersion curve, it is possible to design a FP cavity exhibiting two quasi-degenerate modes. This specific configuration allows for a coupling efficiency that can theoretically achieve 100%. Using 3D FDTD calculations, we discuss the design of such devices and show that high dropping efficiency can be achieved between the Si waveguides and the PhC microcavity.

  20. Coupling of highly explicit gas and aqueous chemistry mechanisms for use in 3-D

    NASA Astrophysics Data System (ADS)

    Ginnebaugh, Diana L.; Jacobson, Mark Z.

    2012-12-01

    This study discusses the coupling of a near-explicit gas-phase chemical mechanism with an extensive aqueous-phase mechanism in an accurate chemical solver designed for use in 3-D models. The gas and aqueous mechanisms and the solver used are the Master Chemical Mechanism (MCM 3.1), the Chemical Aqueous Phase Radical Mechanism (CAPRAM 3.0i), and the SMVGEAR II ordinary differential solver, respectively. The MCM has over 13,500 reactions and 4600 species, whereas CAPRAM treats aqueous chemistry among 390 species and 829 reactions (including 51 gas-to-aqueous phase reactions). SMVGEAR II is a sparse-matrix Gear solver that reduces the computation time significantly while maintaining any specified accuracy. MCM has been used previously with SMVGEAR II in 3-D, and computer timings here indicate that coupling MCM with CAPRAM in SMVGEAR II is also practical. Gas- and aqueous-phase species are coupled through time-dependent dissolutional growth and dissociation equations. This method is validated with a smaller mechanism against results from a previous model intercomparison. When the smaller mechanism is compared with the full MCM-CAPRAM mechanism, some concentrations are still similar but others differ due to the greater detail in chemistry. We also expand the mechanism to include gas-aqueous transfer of two acids, glycolic acid and glyoxylic acid, and modify the glyoxal Henry's law constant from recent measurements. The average glyoxal partitioning in the cloud changed from 67% aqueous-phase to 87% aqueous-phase with the modifications. The addition of gas-aqueous transfer reactions increased the average gas-phase percentage of glycolic acid to 19% and of glyoxylic acid to 16%. This full gas-phase and aqueous-phase chemistry module is a potentially useful tool for studying air pollution in a cloud or a fog.

  1. 3D simulations of gas puff effects on edge plasma and ICRF coupling in JET

    NASA Astrophysics Data System (ADS)

    Zhang, W.; Jacquet, P.; Lerche, E.; Bilato, R.; Bobkov, V.; Coster, D.; Feng, Y.; Guillemaut, C.; Goniche, M.; Harting, D.; Lunt, T.; Noterdaeme, J.-M.; Szepesi, G.; Van Eester, D.; JET Contributors, the

    2017-05-01

    Recent JET (ITER-Like Wall) experiments have shown that the fueling gas puffed from different locations of the vessel can result in different scrape-off layer (SOL) density profiles and therefore different radio frequency (RF) coupling. To reproduce the experimental observations, to understand the associated physics and to optimize the gas puff methods, we have carried out three-dimensional (3D) simulations with the EMC3-EIRENE code in JET-ILW including a realistic description of the vessel geometry and the gas injection modules (GIMs) configuration. Various gas puffing methods have been investigated, in which the location of gas fueling is the only variable parameter. The simulation results are in quantitative agreement with the experimental measurements. They confirm that compared to divertor gas fueling, mid-plane gas puffing increases the SOL density most significantly but locally, while top gas puffing increases it uniformly in toroidal direction but to a lower degree. Moreover, the present analysis corroborates the experimental findings that combined gas puff scenarios—based on distributed main chamber gas puffing—can be effective in increasing the RF coupling for multiple antennas simultaneously. The results indicate that the spreading of the gas, the local ionization and the transport of the ionized gas along the magnetic field lines connecting the local gas cloud in front of the GIMs to the antennas are responsible for the enhanced SOL density and thus the larger RF coupling.

  2. Finite element modeling of a 3D coupled foot-boot model.

    PubMed

    Qiu, Tian-Xia; Teo, Ee-Chon; Yan, Ya-Bo; Lei, Wei

    2011-12-01

    Increasingly, musculoskeletal models of the human body are used as powerful tools to study biological structures. The lower limb, and in particular the foot, is of interest because it is the primary physical interaction between the body and the environment during locomotion. The goal of this paper is to adopt the finite element (FE) modeling and analysis approaches to create a state-of-the-art 3D coupled foot-boot model for future studies on biomechanical investigation of stress injury mechanism, foot wear design and parachute landing fall simulation. In the modeling process, the foot-ankle model with lower leg was developed based on Computed Tomography (CT) images using ScanIP, Surfacer and ANSYS. Then, the boot was represented by assembling the FE models of upper, insole, midsole and outsole built based on the FE model of the foot-ankle, and finally the coupled foot-boot model was generated by putting together the models of the lower limb and boot. In this study, the FE model of foot and ankle was validated during balance standing. There was a good agreement in the overall patterns of predicted and measured plantar pressure distribution published in literature. The coupled foot-boot model will be fully validated in the subsequent works under both static and dynamic loading conditions for further studies on injuries investigation in military and sports, foot wear design and characteristics of parachute landing impact in military.

  3. Co/Au multisegmented nanowires: a 3D array of magnetostatically coupled nanopillars.

    PubMed

    Bran, C; Ivanov, Yu P; Kosel, J; Chubykalo-Fesenko, O; Vazquez, M

    2017-03-03

    Arrays of multisegmented Co/Au nanowires with designed segment lengths and diameters have been prepared by electrodeposition into aluminum oxide templates. The high quality of the Co/Au interface and the crystallographic structure of Co segments have determined by high-resolution transmission electron microscopy. Magnetic hysteresis loop measurements show larger coercivity and squareness of multisegmented nanowires as compared to single segment Co nanowires. The complementary micromagnetic simulations are in good agreement with the experimental results, confirming that the magnetic behavior is defined mainly by magnetostatic coupling between different segments. The proposed structure constitutes an innovative route towards a 3D array of synchronized magnetic nano-oscillators with large potential in nanoelectronics.

  4. Co/Au multisegmented nanowires: a 3D array of magnetostatically coupled nanopillars

    NASA Astrophysics Data System (ADS)

    Bran, C.; Ivanov, Yu P.; Kosel, J.; Chubykalo-Fesenko, O.; Vazquez, M.

    2017-03-01

    Arrays of multisegmented Co/Au nanowires with designed segment lengths and diameters have been prepared by electrodeposition into aluminum oxide templates. The high quality of the Co/Au interface and the crystallographic structure of Co segments have determined by high-resolution transmission electron microscopy. Magnetic hysteresis loop measurements show larger coercivity and squareness of multisegmented nanowires as compared to single segment Co nanowires. The complementary micromagnetic simulations are in good agreement with the experimental results, confirming that the magnetic behavior is defined mainly by magnetostatic coupling between different segments. The proposed structure constitutes an innovative route towards a 3D array of synchronized magnetic nano-oscillators with large potential in nanoelectronics.

  5. Scattering for a 3D coupled nonlinear Schrödinger system

    NASA Astrophysics Data System (ADS)

    Farah, Luiz Gustavo; Pastor, Ademir

    2017-07-01

    We consider a three-dimensional coupled cubic nonlinear Schrödinger system appearing in nonlinear optics. If (P, Q) is a ground state solution, we show that for any initial data (u0, v0) in H1(R3 ) ×H1(R3 ) satisfying M (u0,v0 ) A (u0,v0 ) 3D cubic nonlinear Schrödinger equation.

  6. Emergence of multiple synchronization modes in hydrodynamically-coupled cilia

    NASA Astrophysics Data System (ADS)

    Guo, Hanliang; Kanso, Eva

    2016-11-01

    Motile cilia and flagella exhibit different phase coordinations. For example, closely swimming spermatozoa are observed to synchronize together; bi-flagellates Chlamydomonas regulate the flagella in a "breast-stroke" fashion; cilia on the surface of Paramecium beat in a fixed phase lag in an orchestrated wave like fashion. Experimental evidence suggests that phase coordinations can be achieved solely via hydrodynamical interactions. However, the exact mechanisms behind it remain illusive. Here, adapting a "geometric switch" model, we observe different synchronization modes in pairs of hydrodynamically-coupled cilia by changing physical parameters such as the strength of the cilia internal motor and the separation distance between cilia. Interestingly, we find regions in the parameter space where the coupled cilia reach stable phase coordinations and regions where the phase coordinations are sensitive to perturbations. We also find that leaning into the fluid reduces the sensitivity to perturbations, and produces stable phase coordination that is neither in-phase nor anti-phase, which could explain the origin of metachronal waves in large cilia populations.

  7. Applications of 3D hydrodynamic and particle tracking models in the San Francisco bay-delta estuary

    USGS Publications Warehouse

    Smith, P.E.; Donovan, J.M.; Wong, H.F.N.

    2005-01-01

    Three applications of three-dimensional hydrodynamic and particle-tracking models are currently underway by the United States Geological Survey in the San Francisco Bay-Delta Estuary. The first application is to the San Francisco Bay and a portion of the coastal ocean. The second application is to an important, gated control channel called the Delta Cross Channel, located within the northern portion of the Sacramento-San Joaquin River Delta. The third application is to a reach of the San Joaquin River near Stockton, California where a significant dissolved oxygen problem exists due, in part, to conditions associated with the deep-water ship channel for the Port of Stockton, California. This paper briefly discusses the hydrodynamic and particle tracking models being used and the three applications. Copyright ASCE 2005.

  8. Predictive Models for Hydrodynamic Coupling Coefficients in Clay Media.

    NASA Astrophysics Data System (ADS)

    Gueutin, P.; Gonçalvès, J.; Violette, S.

    2007-12-01

    In charged and low permeability media (e.g. clay media) the classical Darcy's law does not describe accurately the water movement. A generalized Darcy's law, one of the coupled fluxes equations, has to be used. The identification of the coupling parameters, in clay-rocks, is crucial in order to estimate the water flow. Here, we will only focus on the electrochemical-hydraulic coupling coefficients : the intrinsic permeability k and the osmotic permeability kc. These hydrodynamic coupling coefficients can be estimated using two approaches: (i) theoretical models : • porosity/intrinsic permeability relationships, defined for a clay medium, are used to estimate the intrinsic permeability. • an electrochemical model is used to estimate the osmotic coupling coefficient. The electrical model, a triple layer model, is implemented to simulate the interactions between the charged surfaces of the clay minerals and the pore solution. (ii) experiments : • at the sample scale. • at the field scale. The measurement of these parameters is generally challenging either at the sample or at the field scale. For this reason, predictive models can be useful. The purpose of this study is to give reference values for the two coupling parameters under consideration here, using to the petrophysical properties of the medium. Different models to estimate these coupling coefficients are tested : (i) the intrinsic permeability is estimated with a pretrophysical model. In this model, the intrinsic permeability depends on the effective pore radius and the electrical formation factor. (ii) the osmotic coupling coefficient is estimated with the model developed by Revil and Leroy (2004). The comparison between three different models with the available data shows that these data are more closely reproduced using this model. Some reference values are provided for several type of clays as a fonction of some readily measurable or estimable parameters or variables, such as the porosity, the

  9. Accelerating DynEarthSol3D on tightly coupled CPU-GPU heterogeneous processors

    NASA Astrophysics Data System (ADS)

    Ta, Tuan; Choo, Kyoshin; Tan, Eh; Jang, Byunghyun; Choi, Eunseo

    2015-06-01

    DynEarthSol3D (Dynamic Earth Solver in Three Dimensions) is a flexible, open-source finite element solver that models the momentum balance and the heat transfer of elasto-visco-plastic material in the Lagrangian form using unstructured meshes. It provides a platform for the study of the long-term deformation of earth's lithosphere and various problems in civil and geotechnical engineering. However, the continuous computation and update of a very large mesh poses an intolerably high computational burden to developers and users in practice. For example, simulating a small input mesh containing around 3000 elements in 20 million time steps would take more than 10 days on a high-end desktop CPU. In this paper, we explore tightly coupled CPU-GPU heterogeneous processors to address the computing concern by leveraging their new features and developing hardware-architecture-aware optimizations. Our proposed key optimization techniques are three-fold: memory access pattern improvement, data transfer elimination and kernel launch overhead minimization. Experimental results show that our proposed implementation on a tightly coupled heterogeneous processor outperforms all other alternatives including traditional discrete GPU, quad-core CPU using OpenMP, and serial implementations by 67%, 50%, and 154% respectively even though the embedded GPU in the heterogeneous processor has significantly less number of cores than high-end discrete GPU.

  10. 3D position determination in monolithic crystals coupled to SiPMs for PET.

    PubMed

    Etxebeste, Ane; Barrio, John; Muñoz, Enrique; Oliver, Josep F; Solaz, Carles; Llosá, Gabriela

    2016-05-21

    The interest in using continuous monolithic crystals in positron emission tomography (PET) has grown in the last years. Coupled to silicon photomultipliers (SiPMs), the detector can combine high sensitivity and high resolution, the two main factors to be maximized in a positron emission tomograph. In this work, the position determination capability of a detector comprised of a [Formula: see text] mm(3) LYSO crystal coupled to an [Formula: see text]-pixel array of SiPMs is evaluated. The 3D interaction position of γ-rays is estimated using an analytical model of the light distribution including reflections on the facets of the crystal. Monte Carlo simulations have been performed to evaluate different crystal reflectors and geometries. The method has been characterized and applied to different cases. Intrinsic resolution obtained with the position estimation method used in this work, applied to experimental data, achieves sub-millimetre resolution values. Average resolution over the detector surface for 5 mm thick crystal is  ∼0.9 mm FWHM and  ∼1.2 mm FWHM for 10 mm thick crystal. Depth of interaction resolution is close to 2 mm FWHM in both cases, while the FWTM is  ∼5.3 mm for 5 mm thick crystal and  ∼9.6 mm for 10 mm thick crystal.

  11. 3D Simulation of the Growth of Alloy Semiconductor Quantum Dots Considering Morphological and Compositional Coupling

    NASA Astrophysics Data System (ADS)

    Guo, Junyan; Zhang, Yong-Wei; Narayanaswamy, Sridhar

    2012-02-01

    Fabrication of quantum dots (QDs) with high density may be realized by self-assembly via heteroepitaxial growth of thin films. Since the electronic and optoelectronic properties of QDs are sensitive to size, morphology, strain and especially composition, it is of great importance to control their composition profiles and morphology, and engineer the strain in them. Since the growth is a dynamic process, which carries out via surface diffusion driven primarily by strain relaxation and entropy change due to chemical intermixing, a strong coupling between morphological and composition evolutions during this process leads to a rather complex dynamics, which has not been fully understood. In this work, a 3-D finite element model is developed, which is capable of modeling the formation, self-assembly and coarsening of hetero-epitaxial alloy islands by considering the coupling of morphological and compositional evolution. Several interesting experimental observations, such as fast coarsening kinetics; asymmetries in composition profile and island shape; lateral motion of alloy islands have been observed in our simulations. Our model predictions have painted a rather complete picture for the entire dynamic evolution during the growth of nanoscale heteroepitaxial islands.

  12. AdS/CFT for 3D higher-spin gravity coupled to matter fields

    NASA Astrophysics Data System (ADS)

    Fujisawa, Ippei; Nakagawa, Kenta; Nakayama, Ryuichi

    2014-03-01

    New holographic prescription for the model of 3d higher-spin gravity coupled to real matter fields Bμν and C, which was introduced in Fujisawa and Nakayama (2014 Class. Quantum Grav. 31 015003), is formulated. By using a local symmetry, two of the components of Bμν are eliminated, and gauge-fixing conditions are imposed such that the non-vanishing component, Bϕρ, satisfies a covariantly-constancy condition in the background of Chern-Simons gauge fields Aμ, \\bar{A}_{\\mu }. In this model, solutions to the classical equations of motion for Aμ and \\bar{A}_{\\mu } are non-flat due to the interactions with matter fields. The solutions for the gauge fields can, however, be split into two parts, flat gauge fields A_{\\mu }, \\bar{A}_{\\mu }, and those terms that depend on the matter fields. The equations for the matter fields then coincide with covariantly-constancy equations in the flat backgrounds A_{\\mu } and \\bar{A}_{\\mu }, which are exactly the same as those in linearized 3d Vasiliev gravity. The two- and three-point correlation functions of the single-trace operators and the higher-spin currents in the boundary CFT are computed by using an on-shell action tr (Bϕρ C). This term does not depend on coordinates due to the matter equations of motion, and it is not necessary to take the near-boundary limit ρ → ∞. Analysis is presented for SL(3,R) × SL(3,R) as well as HS[\\frac{1}{2}] \\times HS[\\frac{1}{2}] higher-spin gravity. In the latter model, scalar operators with scaling dimensions Δ+ = 3/2 and Δ- = 1/2 appear in a single quantization.

  13. A facile route to the synthesis of monodisperse nanoscale liposomes using 3D microfluidic hydrodynamic focusing in a concentric capillary array.

    PubMed

    Hood, Renee R; DeVoe, Don L; Atencia, Javier; Vreeland, Wyatt N; Omiatek, Donna M

    2014-07-21

    A novel microscale device has been developed to enable the one-step continuous flow assembly of monodisperse nanoscale liposomes using three-dimensional microfluidic hydrodynamic focusing (3D-MHF) in a concentric capillary array. The 3D-MHF flow technique displays patent advantages over conventional methods for nanoscale liposome manufacture (i.e., bulk-scale alcohol injection and/or sonication) through the on-demand synthesis of consistently uniform liposomes without the need for post-processing strategies. Liposomes produced by the 3D-MHF device are of tunable size, have a factor of two improvement in polydispersity, and a production rate that is four orders of magnitude higher than previous MHF methods, which can be attributed to entirely radially symmetric diffusion of alcohol-solvated lipid into an aqueous flow stream. Moreover, the 3D-MHF platform is simple to construct from low-cost, commercially-available components, which obviates the need for advanced microfabrication strategies necessitated by previous MHF nanoparticle synthesis platforms.

  14. Left Ventricular Myocardial Segmentation in 3-D Ultrasound Recordings: Effect of Different Endocardial and Epicardial Coupling Strategies.

    PubMed

    Pedrosa, Joao; Barbosa, Daniel; Heyde, Brecht; Schnell, Frederic; Rosner, Assami; Claus, Piet; D'hooge, Jan

    2017-03-01

    Cardiac volume/function assessment remains a critical step in daily cardiology, and 3-D ultrasound plays an increasingly important role. Though development of automatic endocardial segmentation methods has received much attention, the same cannot be said about epicardial segmentation, in spite of the importance of full myocardial segmentation. In this paper, different ways of coupling the endocardial and epicardial segmentations are contrasted and compared with uncoupled segmentation. For this purpose, the B-spline explicit active surfaces framework was used; 27 3-D echocardiographic images were used to validate the different coupling strategies, which were compared with manual contouring of the endocardial and epicardial borders performed by an expert. It is shown that an independent segmentation of the endocardium followed by an epicardial segmentation coupled to the endocardium is the most advantageous. In this way, a framework for fully automatic 3-D myocardial segmentation is proposed using a novel coupling strategy.

  15. Scaling and performance of a 3-D radiation hydrodynamics code on message-passing parallel computers: final report

    SciTech Connect

    Hayes, J C; Norman, M

    1999-10-28

    This report details an investigation into the efficacy of two approaches to solving the radiation diffusion equation within a radiation hydrodynamic simulation. Because leading-edge scientific computing platforms have evolved from large single-node vector processors to parallel aggregates containing tens to thousands of individual CPU's, the ability of an algorithm to maintain high compute efficiency when distributed over a large array of nodes is critically important. The viability of an algorithm thus hinges upon the tripartite question of numerical accuracy, total time to solution, and parallel efficiency.

  16. Induced Polarization with Electromagnetic Coupling: 3D Spectral Imaging Theory, EMSP Project No. 73836

    SciTech Connect

    Morgan, F. Dale; Sogade, John

    2004-12-14

    This project was designed as a broad foundational study of spectral induced polarization (SIP) for characterization of contaminated sites. It encompassed laboratory studies of the effects of chemistry on induced polarization, development of 3D forward modeling and inversion codes, and investigations of inductive and capacitive coupling problems. In the laboratory part of the project a physico-chemical model developed in this project was used to invert laboratory IP spectra for the grain size and the effective grain size distribution of the sedimentary rocks as well as the formation factor, porosity, specific surface area, and the apparent fractal dimension. Furthermore, it was established that the IP response changed with the solution chemistry, the concentration of a given solution chemistry, valence of the constituent ions, and ionic radius. In the field part of the project, a 3D complex forward and inverse model was developed. It was used to process data acquired at two frequencies (1/16 Hz and 1/ 4Hz) in a cross-borehole configuration at the A-14 outfall area of the Savannah River Site (SRS) during March 2003 and June 2004. The chosen SRS site was contaminated with Tetrachloroethylene (TCE) and Trichloroethylene (PCE) that were disposed in this area for several decades till the 1980s. The imaginary conductivity produced from the inverted 2003 data correlated very well with the log10 (PCE) concentration derived from point sampling at 1 ft spacing in five ground-truth boreholes drilled after the data acquisition. The equivalent result for the 2004 data revealed that there were significant contaminant movements during the period March 2003 and June 2004, probably related to ground-truth activities and nearby remediation activities. Therefore SIP was successfully used to develop conceptual models of volume distributions of PCE/TCE contamination. In addition, the project developed non-polarizing electrodes that can be deployed in boreholes for years. A total of 28

  17. Detection of unlabeled particles in the low micrometer size range using light scattering and hydrodynamic 3D focusing in a microfluidic system.

    PubMed

    Zhuang, Guisheng; Jensen, Thomas G; Kutter, Jörg P

    2012-07-01

    In this paper, we describe a microfluidic device composed of integrated microoptical elements and a two-layer microchannel structure for highly sensitive light scattering detection of micro/submicrometer-sized particles. In the two-layer microfluidic system, a sample flow stream is first constrained in the out-of-plane direction into a narrow sheet, and then focused in-plane into a small core region, obtaining on-chip three-dimensional (3D) hydrodynamic focusing. All the microoptical elements, including waveguides, microlens, and fiber-to-waveguide couplers, and the in-plane focusing channels are fabricated in one SU-8 layer by standard photolithography. The channels for out-of-plane focusing are made in a polydimethylsiloxane (PDMS) layer by a single cast using a SU-8 master. Numerical and experimental results indicate that the device can realize 3D hydrodynamic focusing reliably over a wide range of Reynolds numbers (0.5 < Re < 20). Polystyrene particles of three sizes (2, 1, and 0.5 μm) were measured in the microfluidic device with integrated optics, demonstrating the feasibility of this approach to detect particles in the low micrometer size range by light scattering detection.

  18. From 3D gravity to coupled fluid and heat transport modelling - a case study from the Upper Rhine Graben

    NASA Astrophysics Data System (ADS)

    Freymark, Jessica; Sippel, Judith; Scheck-Wenderoth, Magdalena; Bär, Kristian; Stiller, Manfred; Fritsche, Johann-Gerhard; Kracht, Matthias

    2017-04-01

    Numerical models that predict and help to understand subsurface hydrothermal conditions are key to reduce the risk of drilling non-productive geothermal wells. Such simulations of coupled fluid and heat transport need a reliable 3D structural model. Therefore, we use an integrated approach of data-based 3D structural, gravity, conductive thermal and thermo-hydraulic coupled modelling. The Upper Rhine Graben (URG) is known for its large potential for deep geothermal energy that is already used in e.g. Soultz-sous-Forêts. In the frame of the EU-funded project "IMAGE" (Integrated Methods for Advanced Geothermal Exploration, grant agreement no. 608553), we assess the dominant processes and effective physical properties that control the deep thermal field of the URG. Therefore, we have built a lithospheric-scale 3D structural model of the URG by integrating existing data-based 3D models, deep seismic reflection and refraction profiles, as well as receiver function data. 3D gravity modelling was used to assess the internal configuration of the upper crystalline crust in addition to deep seismic lines. The resulting gravity-constrained 3D structural model was then used as base to calculate the 3D conductive thermal field. An analysis of deviations between measured and calculated temperatures revealed that heat transport connected to fluid circulation is probably relevant at depths above 2500 m. To test this hypotheses smaller-scale and higher resolution models for coupled fluid and heat transport were simulated. We present the results from this combined workflow considering 3D gravity and 3D thermal modelling.

  19. Robust automatic rodent brain extraction using 3-D pulse-coupled neural networks (PCNN).

    PubMed

    Chou, Nigel; Wu, Jiarong; Bai Bingren, Jordan; Qiu, Anqi; Chuang, Kai-Hsiang

    2011-09-01

    Brain extraction is an important preprocessing step for further processing (e.g., registration and morphometric analysis) of brain MRI data. Due to the operator-dependent and time-consuming nature of manual extraction, automated or semi-automated methods are essential for large-scale studies. Automatic methods are widely available for human brain imaging, but they are not optimized for rodent brains and hence may not perform well. To date, little work has been done on rodent brain extraction. We present an extended pulse-coupled neural network algorithm that operates in 3-D on the entire image volume. We evaluated its performance under varying SNR and resolution and tested this method against the brain-surface extractor (BSE) and a level-set algorithm proposed for mouse brain. The results show that this method outperforms existing methods and is robust under low SNR and with partial volume effects at lower resolutions. Together with the advantage of minimal user intervention, this method will facilitate automatic processing of large-scale rodent brain studies.

  20. 3-D Particle Simulation of Strongly-Coupled Chains of Charged Polymers

    NASA Astrophysics Data System (ADS)

    Tanaka, Toyoichi; Tanaka, Motohiko; Pande, V.; Grosberg, A.

    1996-11-01

    The behaviors of the polyampholyte (PA) which is a connected chain of charged beads (molecules) submerged in the neutral solvent is studied using the 3-D particle simulation code. The major issue is how an equilibrium and kinetics of the PA depend on the thermal and electrostatic forces, i.e., the coupling constant Γ= e^2/aT . We follow a dynamical evolution of the PA, considering the electrostatic force, (2) the binding force between the adjacent beads, (3) the random thermal force exerted by the solvent, and (4) the frictional force: m fracdv_idt = sumj fracZ_iZj e^2 |ri -r_j|^2 hatr_ij - frac3Ta^2(2 ri -r_i+1 -r_i-1) + F^(th) - m ν v_i. Preliminary runs show that, when the excess charge δ N on the chain is larger than N^1/2 ( N : the number of the beads), the size of the polyampholyte increases as in the Monte Carlo simulation using the energy principle [Kantor, Kardar and Li, Phys.Rev.E, 49, 1383 (1994)]. The measured time rate of the size increase for the fixed value of Γ is scaled as, d/dt ~ δ N - N^1/2 for δ N > N^1/2 , and d/dt ~ 0 otherwise.

  1. On Evaluating circulation and temperature stratification under changing water levels in Lake Mead with a 3D hydrodynamic model

    NASA Astrophysics Data System (ADS)

    Li, Y.; Acharya, K.; Chen, D.; Stone, M.; Yu, Z.; Young, M.; Zhu, J.; Shafer, D. S.; Warwick, J. J.

    2009-12-01

    Sustained drought in the western United States since 2000 has led to a significant drop (about 35 meters) in the water level of Lake Mead, the largest reservoir by volume in United States. The drought combined with rapid urban development in southern Nevada and emergence of invasive species has threatened the water quality and ecological processes in Lake Mead. A three-dimensional hydrodynamic model, Environmental Fluid Dynamics Code (EFDC), was applied to investigate lake circulation and temperature stratification in parts of Lake Mead (Las Vegas Bay and Boulder Basin) under changing water levels. Besides the inflow from Las Vegas Wash and the Colorado River, the model considered atmospheric changes as well as the boundary conditions restricted by the operation of Hoover Dam. The model was calibrated and verified by using observed data including water level, velocity, and temperature from 2003 and 2005. The model was applied to study the hydrodynamic processes at water level 366.8 m (year 2000) and at water level 338.2 m (year 2008). The high-stage simulation described the pre-drought lake hydrodynamic processes while the low-stage simulation highlighted the drawdown impact on such processes. The results showed that both inflow and wind-driven mixing process played major roles in the thermal stratification and lake circulation in both cases. However, the atmospheric boundary played a more important role than inflow temperature on thermal stratification of Lake Mead during water level decline. Further, the thermal stratification regime and flow circulation pattern in shallow lake regions (e.g.., the Boulder Basin area) were most impacted. The temperature of the lake at the high-stage was more sensitive to inflow temperatures than at low-stage. Furthermore, flow velocities decreased with the decreasing water level due to reduction in wind impacts, particularly in shallow areas of the lake. Such changes in temperature and lake current due to present drought have a

  2. 3D GRMHD and GRPIC Simulations of Disk-Jet Coupling and Emission

    SciTech Connect

    Nishikawa, Ken-Ichi; Mizuno, Y.; Watson, M.; Hardee, P.; Fuerst, S.; Wu, K.; Fishman, G.J.; /NASA, Marshall

    2006-12-19

    We investigate jet formation in black-hole systems using 3-D General Relativistic Particle-In-Cell (GRPIC) and 3-D GRMHD simulations. GRPIC simulations, which allow charge separations in a collisionless plasma, do not need to invoke the frozen condition as in GRMHD simulations. 3-D GRPIC simulations show that jets are launched from Kerr black holes as in 3-D GRMHD simulations, but jet formation in the two cases may not be identical. Comparative study of black hole systems with GRPIC and GRMHD simulations with the inclusion of radiate transfer will further clarify the mechanisms that drive the evolution of disk-jet systems.

  3. 3D effects on vortex-shedding flow and hydrodynamic coefficients of a vertically oscillating cylinder with a bottom-attached disk

    NASA Astrophysics Data System (ADS)

    Wang, Quan; Kou, Yu-feng; Zhu, Ren-qing; Chen, Hong

    2017-08-01

    Vortex-shedding flow induced by the vertical oscillation of a cylinder with bottom-attached disks of different diameter ratio D d/ D c and thickness ratio t d/ D c is studied by a 3D (three-dimensional) numerical model developed in this paper, and compared with the results obtained through 2D (two-dimensional) numerical model. The high-order upwind scheme is applied to stabilize the computation, and convergence is accelerated by the multi-grid method. Qualitative and quantitative analyses of the differences between the 2D and 3D simulation results reveal the 3D effect on the flow field characteristics and hydrodynamic coefficients of the vertically oscillating cylinder with a bottom-attached disk. The 3D effect on the fluid field is mainly reflected in the significance of three vortex-shedding patterns: ω x has a greater effect on the flow fields around the sharp edges relative to the vortices generated in the 2D simulation. In the slice along the axial orientation, the vortex effect of ω y along the radial axis is smaller than that of ω x along the circumferential direction, indicating the radial effect on the velocity more pronounced than the circumferential effect around the sharp edges of the disk. The rotational interaction ω z of the fluid in the horizontal plane during the heave motion is insignificant. Based on the 2D and 3D simulation results, the turning points that separate the increasing regimes of the added mass coefficient and damping ratio are identified. The dependence of the turning point on the diameter ratio D d/ D c and thickness ratio t d/ D c are discussed in detail.

  4. Dynamic coupling between fluid flow and vein growth in fractures: a 3D numerical model

    NASA Astrophysics Data System (ADS)

    Schwarz, J.-O.; Enzmann, F.

    2012-04-01

    Fluid flow is one of the main mass transport mechanisms in the Earth's crust and abundant mineral vein networks are important indicators for fluid flow and fluid rock interaction. These systems are dynamic and part of the so called RTM processes (reaction-transport-mechanics). Understanding of mineral vein systems requires coupling of these processes. Here we present a conceptional model for dynamic vein growth of syntaxial, posttectonic veins generated by advective fluid flow and show first results of a numerical model for this scenario. Vein generation requires three processes to occur: (i) fracture generation by mechanical stress e.g. hydro-fracturing, (ii) flow of a supersaturated fluid on that fracture and (iii) crystallization of phase(s) on or in the fracture. 3D synthetic fractures are generated with the SynFrac code (Ogilvie, et al. 2006). Subsequently solutions of the Navier-Stokes equation for this fracture are computed by a computational fluid dynamics code called GeoDict (Wiegmann 2007). Transport (advective and diffusive) of chemical species to growth sites in the fracture and vein growth are computed by a self-written MATLAB script. The numerical model discretizes the wall rock and fracture geometry by volumetric pixels (voxels). Based on this representation, the model computes the three basic functions for vein generation: (a) nucleation, (b) fluid flow with transport of chemical species and (c) growth. The following conditions were chosen for these three modules. Nucleation is heterogeneous and occurs instantaneously at the wall rock/fracture interface. Advective and diffusive flow of a supersaturated fluid and related transport of chemical species occurs according to the computed fluid flow field by GeoDict. Concentration of chemical species at the inflow is constant, representing external fluid buffering. Changes/decrease in the concentration of chemical species occurs only due to vein growth. Growth of nuclei is limited either by transport of

  5. Turbulence in strongly coupled dusty plasmas using generalized hydrodynamic description

    SciTech Connect

    Tiwari, Sanat Kumar; Dharodi, Vikram Singh; Das, Amita; Patel, Bhavesh G.; Kaw, Predhiman

    2015-02-15

    The properties of decaying turbulence have been studied with the help of a Generalized Hydrodynamic (GHD) fluid model in the context of strongly coupled dusty plasma medium in two dimensions. The GHD model treats the strongly coupled dusty plasma system as a visco-elastic medium. The incompressible limit of the GHD model is considered here. The studies carried out here are, however, applicable to a wider class of visco-elastic systems, and are not merely confined to the dusty plasma medium. Our simulations studies show that an initial spectrum that is confined in a limited domain of wave numbers becomes broad, even when the Reynold's number is much less than the critical value required for the onset of turbulence in Newtonian fluids. This is a signature of elastic turbulence, where Weissenberg's number also plays an important role on the onset of turbulence. This feature has been observed in several experiments. It is also shown that the existence of memory relaxation time parameter and the transverse shear wave inhibit the normal process (for 2-D systems) of inverse spectral cascade in this case. A detailed simulation study has been carried out for the understanding of this inhibition.

  6. Coupled fvGCM-GCE Modeling System, 3D Cloud-Resolving Model and Cloud Library

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2005-01-01

    Recent GEWEX Cloud System Study (GCSS) model comparison projects have indicated that cloud-resolving models (CRMs) agree with observations better than traditional singlecolumn models in simulating various types of clouds and cloud systems from Merent geographic locations. Current and future NASA satellite programs can provide cloud, precipitation, aerosol and other data at very fine spatial and temporal scales. It requires a coupled global circulation model (GCM) and cloudscale model (termed a super-parameterization or multiscale modeling framework, MMF) to use these satellite data to improve the understanding of the physical processes that are responsible for the variation in global and regional climate and hydrological systems. The use of a GCM will enable global coverage, and the use of a CRM will allow for better and more sophisticated physical parameteridon NASA satellite and field campaign cloud related datasets can provide initial conditions as well as validation for both the MMF and CRMs. A seed fund is available at NASA Goddard to build a MMF based on the 2D Goddard cumulus Ensemble (GCE) model and the Goddard finite volume general circulation model (fvGCM). A prototype MMF in being developed and production nms will be conducted at the beginning of 2005. In this talk, I will present: (1) A brief review on GCE model and its applications on precipitation processes, (2) The Goddard MMF and the major difference between two existing MMFs (CSU MMF and Goddard MMF), (3) A cloud library generated by Goddard MMF, and 3D GCE model, and (4) A brief discussion on the GCE model on developing a global cloud simulator.

  7. Coupled fvGCM-GCE Modeling System, 3D Cloud-Resolving Model and Cloud Library

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2005-01-01

    Recent GEWEX Cloud System Study (GCSS) model comparison projects have indicated that cloud- resolving models (CRMs) agree with observations better than traditional single-column models in simulating various types of clouds and cloud systems from different geographic locations. Current and future NASA satellite programs can provide cloud, precipitation, aerosol and other data at very fine spatial and temporal scales. It requires a coupled global circulation model (GCM) and cloud-scale model (termed a super-parameterization or multi-scale modeling framework, MMF) to use these satellite data to improve the understanding of the physical processes that are responsible for the variation in global and regional climate and hydrological systems. The use of a GCM will enable global coverage, and the use of a CRM will allow for better and more sophisticated physical parameterization. NASA satellite and field campaign cloud related datasets can provide initial conditions as well as validation for both the MMF and CRMs. A seed fund is available at NASA Goddard to build a MMF based on the 2D Goddard Cumulus Ensemble (GCE) model and the Goddard finite volume general circulation model (fvGCM). A prototype MMF in being developed and production runs will be conducted at the beginning of 2005. In this talk, I will present: (1) A brief review on GCE model and its applications on precipitation processes, ( 2 ) The Goddard MMF and the major difference between two existing MMFs (CSU MMF and Goddard MMF), (3) A cloud library generated by Goddard MMF, and 3D GCE model, and (4) A brief discussion on the GCE model on developing a global cloud simulator.

  8. Coupled fvGCM-GCE Modeling System, 3D Cloud-Resolving Model and Cloud Library

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2005-01-01

    Recent GEWEX Cloud System Study (GCSS) model comparison projects have indicated that cloud- resolving models (CRMs) agree with observations better than traditional single-column models in simulating various types of clouds and cloud systems from different geographic locations. Current and future NASA satellite programs can provide cloud, precipitation, aerosol and other data at very fine spatial and temporal scales. It requires a coupled global circulation model (GCM) and cloud-scale model (termed a super-parameterization or multi-scale modeling framework, MMF) to use these satellite data to improve the understanding of the physical processes that are responsible for the variation in global and regional climate and hydrological systems. The use of a GCM will enable global coverage, and the use of a CRM will allow for better and more sophisticated physical parameterization. NASA satellite and field campaign cloud related datasets can provide initial conditions as well as validation for both the MMF and CRMs. A seed fund is available at NASA Goddard to build a MMF based on the 2D Goddard Cumulus Ensemble (GCE) model and the Goddard finite volume general circulation model (fvGCM). A prototype MMF in being developed and production runs will be conducted at the beginning of 2005. In this talk, I will present: (1) A brief review on GCE model and its applications on precipitation processes, ( 2 ) The Goddard MMF and the major difference between two existing MMFs (CSU MMF and Goddard MMF), (3) A cloud library generated by Goddard MMF, and 3D GCE model, and (4) A brief discussion on the GCE model on developing a global cloud simulator.

  9. Coupled fvGCM-GCE Modeling System, 3D Cloud-Resolving Model and Cloud Library

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2005-01-01

    Recent GEWEX Cloud System Study (GCSS) model comparison projects have indicated that cloud-resolving models (CRMs) agree with observations better than traditional singlecolumn models in simulating various types of clouds and cloud systems from Merent geographic locations. Current and future NASA satellite programs can provide cloud, precipitation, aerosol and other data at very fine spatial and temporal scales. It requires a coupled global circulation model (GCM) and cloudscale model (termed a super-parameterization or multiscale modeling framework, MMF) to use these satellite data to improve the understanding of the physical processes that are responsible for the variation in global and regional climate and hydrological systems. The use of a GCM will enable global coverage, and the use of a CRM will allow for better and more sophisticated physical parameteridon NASA satellite and field campaign cloud related datasets can provide initial conditions as well as validation for both the MMF and CRMs. A seed fund is available at NASA Goddard to build a MMF based on the 2D Goddard cumulus Ensemble (GCE) model and the Goddard finite volume general circulation model (fvGCM). A prototype MMF in being developed and production nms will be conducted at the beginning of 2005. In this talk, I will present: (1) A brief review on GCE model and its applications on precipitation processes, (2) The Goddard MMF and the major difference between two existing MMFs (CSU MMF and Goddard MMF), (3) A cloud library generated by Goddard MMF, and 3D GCE model, and (4) A brief discussion on the GCE model on developing a global cloud simulator.

  10. 3-D Surface Depression Profiling Using High Frequency Focused Air-Coupled Ultrasonic Pulses

    NASA Technical Reports Server (NTRS)

    Roth, Don J.; Kautz, Harold E.; Abel, Phillip B.; Whalen, Mike F.; Hendricks, J. Lynne; Bodis, James R.

    1999-01-01

    Surface topography is an important variable in the performance of many industrial components and is normally measured with diamond-tip profilometry over a small area or using optical scattering methods for larger area measurement. This article shows quantitative surface topography profiles as obtained using only high-frequency focused air-coupled ultrasonic pulses. The profiles were obtained using a profiling system developed by NASA Glenn Research Center and Sonix, Inc (via a formal cooperative agreement). (The air transducers are available as off-the-shelf items from several companies.) The method is simple and reproducible because it relies mainly on knowledge and constancy of the sound velocity through the air. The air transducer is scanned across the surface and sends pulses to the sample surface where they are reflected back from the surface along the same path as the incident wave. Time-of-flight images of the sample surface are acquired and converted to depth/surface profile images using the simple relation (d = V*t/2) between distance (d), time-of-flight (t), and the velocity of sound in air (V). The system has the ability to resolve surface depression variations as small as 25 microns, is useable over a 1.4 mm vertical depth range, and can profile large areas only limited by the scan limits of the particular ultrasonic system. (Best-case depth resolution is 0.25 microns which may be achievable with improved isolation from vibration and air currents.) The method using an optimized configuration is reasonably rapid and has all quantitative analysis facilities on-line including 2-D and 3-D visualization capability, extreme value filtering (for faulty data), and leveling capability. Air-coupled surface profilometry is applicable to plate-like and curved samples. In this article, results are shown for several proof-of-concept samples, plastic samples burned in microgravity on the STS-54 space shuttle mission, and a partially-coated cylindrical ceramic

  11. HIGH-TEMPERATURE PROCESSING OF SOLIDS THROUGH SOLAR NEBULAR BOW SHOCKS: 3D RADIATION HYDRODYNAMICS SIMULATIONS WITH PARTICLES

    SciTech Connect

    Boley, A. C.; Morris, M. A.; Desch, S. J.

    2013-10-20

    A fundamental, unsolved problem in solar system formation is explaining the melting and crystallization of chondrules found in chondritic meteorites. Theoretical models of chondrule melting in nebular shocks have been shown to be consistent with many aspects of thermal histories inferred for chondrules from laboratory experiments; but, the mechanism driving these shocks is unknown. Planetesimals and planetary embryos on eccentric orbits can produce bow shocks as they move supersonically through the disk gas, and are one possible source of chondrule-melting shocks. We investigate chondrule formation in bow shocks around planetoids through three-dimensional radiation hydrodynamics simulations. A new radiation transport algorithm that combines elements of flux-limited diffusion and Monte Carlo methods is used to capture the complexity of radiative transport around bow shocks. An equation of state that includes the rotational, vibrational, and dissociation modes of H{sub 2} is also used. Solids are followed directly in the simulations and their thermal histories are recorded. Adiabatic expansion creates rapid cooling of the gas, and tail shocks behind the embryo can cause secondary heating events. Radiative transport is efficient, and bow shocks around planetoids can have luminosities ∼few× 10{sup –8} L{sub ☉}. While barred and radial chondrule textures could be produced in the radiative shocks explored here, porphyritic chondrules may only be possible in the adiabatic limit. We present a series of predicted cooling curves that merit investigation in laboratory experiments to determine whether the solids produced by bow shocks are represented in the meteoritic record by chondrules or other solids.

  12. A microfluidic opto-caloric switch for sorting of particles by using 3D-hydrodynamic focusing based on SLE fabrication capabilities.

    PubMed

    Meineke, G; Hermans, M; Klos, J; Lenenbach, A; Noll, R

    2016-03-07

    In a miniaturised flow switch fluid flows are controlled by reducing the local viscosity via absorption of laser radiation. Through this, the local flow rates are increased to switch the outlet port of a fluid flow carrying the analyte. The microfluidic chip is fabricated using Selective Laser-Induced Etching (SLE). SLE allows novel 3D-hydrodynamic focusing, realising circular shaped channel cross-sections and adapting interaction volume geometries to the profile of the laser radiation for optimised absorption. The performance of the switch is validated experimentally with a dyed analyte and video image processing. The ability to sort particles like cells is demonstrated at 8 Hz using polystyrene beads having a diameter of 8 μm.

  13. Fully-coupled analysis of jet mixing problems. Three-dimensional PNS model, SCIP3D

    NASA Technical Reports Server (NTRS)

    Wolf, D. E.; Sinha, N.; Dash, S. M.

    1988-01-01

    Numerical procedures formulated for the analysis of 3D jet mixing problems, as incorporated in the computer model, SCIP3D, are described. The overall methodology closely parallels that developed in the earlier 2D axisymmetric jet mixing model, SCIPVIS. SCIP3D integrates the 3D parabolized Navier-Stokes (PNS) jet mixing equations, cast in mapped cartesian or cylindrical coordinates, employing the explicit MacCormack Algorithm. A pressure split variant of this algorithm is employed in subsonic regions with a sublayer approximation utilized for treating the streamwise pressure component. SCIP3D contains both the ks and kW turbulence models, and employs a two component mixture approach to treat jet exhausts of arbitrary composition. Specialized grid procedures are used to adjust the grid growth in accordance with the growth of the jet, including a hybrid cartesian/cylindrical grid procedure for rectangular jets which moves the hybrid coordinate origin towards the flow origin as the jet transitions from a rectangular to circular shape. Numerous calculations are presented for rectangular mixing problems, as well as for a variety of basic unit problems exhibiting overall capabilities of SCIP3D.

  14. A generic semi-implicit coupling methodology for use in RELAP5-3D{copyright}

    SciTech Connect

    Aumiller, D.L.; Tomlinson, E.T.; Weaver, W.L.

    2000-09-01

    A generic semi-implicit coupling methodology has been developed and implemented in the RELAP5-3D{copyright} computer program. This methodology allows RELAP5-3D{copyright} to be used with other computer programs to perform integrated analyses of nuclear power reactor systems and related experimental facilities. The coupling methodology potentially allows different programs to be used to model different portions of the system. The programs are chosen based on their capability to model the phenomena that are important in the simulation in the various portions of the system being considered. The methodology was demonstrated using a test case in which the test geometry was divided into two parts each of which was solved as a RELAP5-3D{copyright} simulation. This test problem exercised all of the semi-implicit coupling features which were installed in RELAP5-3D0. The results of this verification test case show that the semi-implicit coupling methodology produces the same answer as the simulation of the test system as a single process.

  15. HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.

    PubMed

    Cornilescu, Gabriel; Bahrami, Arash; Tonelli, Marco; Markley, John L; Eghbalnia, Hamid R

    2007-08-01

    We describe a novel method for the robust, rapid, and reliable determination of J couplings in multi-dimensional NMR coupling data, including small couplings from larger proteins. The method, "High-resolution Iterative Frequency Identification of Couplings" (HIFI-C) is an extension of the adaptive and intelligent data collection approach introduced earlier in HIFI-NMR. HIFI-C collects one or more optimally tilted two-dimensional (2D) planes of a 3D experiment, identifies peaks, and determines couplings with high resolution and precision. The HIFI-C approach, demonstrated here for the 3D quantitative J method, offers vital features that advance the goal of rapid and robust collection of NMR coupling data. (1) Tilted plane residual dipolar couplings (RDC) data are collected adaptively in order to offer an intelligent trade off between data collection time and accuracy. (2) Data from independent planes can provide a statistical measure of reliability for each measured coupling. (3) Fast data collection enables measurements in cases where sample stability is a limiting factor (for example in the presence of an orienting medium required for residual dipolar coupling measurements). (4) For samples that are stable, or in experiments involving relatively stronger couplings, robust data collection enables more reliable determinations of couplings in shorter time, particularly for larger biomolecules. As a proof of principle, we have applied the HIFI-C approach to the 3D quantitative J experiment to determine N-C' RDC values for three proteins ranging from 56 to 159 residues (including a homodimer with 111 residues in each subunit). A number of factors influence the robustness and speed of data collection. These factors include the size of the protein, the experimental set up, and the coupling being measured, among others. To exhibit a lower bound on robustness and the potential for time saving, the measurement of dipolar couplings for the N-C' vector represents a realistic

  16. Hydrodynamical Coupling of Mass and Momentum in Multiphase Galactic Winds

    NASA Astrophysics Data System (ADS)

    Schneider, Evan E.; Robertson, Brant E.

    2017-01-01

    Using a set of high-resolution hydrodynamical simulations run with the Cholla code, we investigate how mass and momentum couple to the multiphase components of galactic winds. The simulations model the interaction between a hot wind driven by supernova explosions and a cooler, denser cloud of interstellar or circumgalactic media. By resolving scales of {{Δ }}x< 0.1 pc over > 100 pc distances, our calculations capture how the cloud disruption leads to a distribution of densities and temperatures in the resulting multiphase outflow and quantify the mass and momentum associated with each phase. We find that the multiphase wind contains comparable mass and momenta in phases over a wide range of densities and temperatures extending from the hot wind (n≈ {10}-2.5 {{cm}}-3, T≈ {10}6.5 K) to the coldest components (n≈ {10}2 {{cm}}-3, T≈ {10}2 K). We further find that the momentum distributes roughly in proportion to the mass in each phase, and the mass loading of the hot phase by the destruction of cold, dense material is an efficient process. These results provide new insight into the physical origin of observed multiphase galactic outflows and inform galaxy formation models that include coarser treatments of galactic winds. Our results confirm that cool gas observed in outflows at large distances from the galaxy (≳ 1 kpc) likely does not originate through the entrainment of cold material near the central starburst.

  17. Film rupture in the diffuse interface model coupled to hydrodynamics.

    PubMed

    Thiele, U; Velarde, M G; Neuffer, K; Pomeau, Y

    2001-09-01

    The process of dewetting of a thin liquid film is usually described using a long-wave approximation yielding a single evolution equation for the film thickness. This equation incorporates an additional pressure term-the disjoining pressure-accounting for the molecular forces. Recently a disjoining pressure was derived coupling hydrodynamics to the diffuse interface model [L. M. Pismen and Y. Pomeau, Phys. Rev. E 62, 2480 (2000)]. Using the resulting evolution equation as a generic example for the evolution of unstable thin films, we examine the thickness ranges for linear instability and metastability for flat films, the families of stationary periodic and localized solutions, and their linear stability. The results are compared to simulations of the nonlinear time evolution. From this we conclude that, within the linearly unstable thickness range, there exists a well defined subrange where finite perturbations are crucial for the time evolution and the resulting structures. In the remainder of the linearly unstable thickness range the resulting structures are controlled by the fastest flat film mode assumed up to now for the entire linearly unstable thickness range. Finally, the implications for other forms of disjoining pressure in dewetting and for spinodal decomposition are discussed.

  18. Coupled groundwater flow and transport: 2. Thermohaline and 3D convection systems

    NASA Astrophysics Data System (ADS)

    Diersch, H.-J. G.; Kolditz, O.

    This work continues the analysis of variable density flow in groundwater systems. It focuses on both thermohaline (double-diffusive) and three-dimensional (3D) buoyancy-driven convection processes. The finite-element method is utilized to tackle these complex non-linear problems in two and three dimensions. The preferred numerical approaches are discussed regarding appropriate basic formulations, balance-consistent discretization techniques for derivative quantitites, extension of the Boussinesq approximation, proper constraint conditions, time marching schemes, and computational strategies for solving large systems. Applications are presented for the thermohaline Elder and salt dome problem as well as for the 3D extension of the Elder problem with and without thermohaline effects and a 3D Bénard convection process. The simulations are performed by using the package FEFLOW. Conclusions are drawn with respect to numerical efforts and the appropriateness for practical needs.

  19. Analysis of riverine suspended particulate matter fluxes (Gulf of Lion, Mediterranean Sea) using a synergy of ocean color observations with a 3-D hydrodynamic sediment transport model

    NASA Astrophysics Data System (ADS)

    Le Fouest, Vincent; Chami, Malik; Verney, Romaric

    2015-02-01

    The export of riverine suspended particulate matter (SPM) in the coastal ocean has major implications for the biogeochemical cycles. In the Mediterranean Sea (France), the Rhone River inputs of SPM into the Gulf of Lion (GoL) are highly variable in time, which severely impedes the assessment of SPM fluxes. The objectives of this study are (i) to investigate the prediction of the land-to-ocean flux of SPM using the complementarity (i.e., synergy) between a hydrodynamic sediment transport model and satellite observations, and (ii) to analyze the spatial distribution of the SPM export. An original approach that combines the MARS-3D model with satellite ocean color data is proposed. Satellite-derived SPM and light penetration depth are used to initialize MARS-3D and to validate its predictions. A sensitivity analysis is performed to quantify the impact of riverine SPM size composition and settling rate on the horizontal export of SPM. The best agreement between the model and the satellite in terms of SPM spatial distribution and export is obtained for two conditions: (i) when the relative proportion of "heavy and fast" settling particles significantly increases relative to the "light and slow" ones, and (ii) when the settling rate of heavy and light SPM increases by fivefold. The synergy between MARS-3D and the satellite data improved the SPM flux predictions by 48% near the Rhone River mouth. Our results corroborate the importance of implementing satellite observations within initialization procedures of ocean models since data assimilation techniques may fail for river floods showing strong seasonal variability.

  20. Induced Polarization with Electromagnetic Coupling: 3D Spectral Imaging Theory EMSP Project No. 73836

    SciTech Connect

    Morgan, F. Dale

    2003-06-01

    considered invertible by our existing 2D/3D complex resistivity codes. The results of this exercise were inconclusive because the ground-truthing phase of the operation failed to detect ny concentration of NAPL above a requisite threshold of 40-50{micro}g/g. It is our understanding that this threshold level is based upon analytic chemical partition analysis, which is dependent upon the physicochemical properties of the soil, its pore-fluid, and organic constituents [Cohen and Mercer, 1993], and thus represents a necessary and sufficient condition to confirm the presence of NAPL. Therefore, since the round-truthing phase never found PCE concentrations in excess of {approx}3mg/g, there is no irrefutable evidence of NAPL; hence, the objective of the FY01 exercise could not be completed. Nonetheless, ERL's conversion results agree well with the ground truth considering the sparseness of the CRS boreholes, low concentrations of ''PCE'' (< 3{micro}g/g), and despite poor electrodes. Note that the displacement of the enter of the SIP phase anomaly from that of the ground truth data might be due to inaccuracies in the SIP conversion (which we are still working on improving) or sampling depth errors during the ground-truthing phase which could cumulatively amount to a meter or more. (3) As a continuation of the FY01 efforts, another et of surface and borehole SIP measurements were planned at another SRS site during FY02, which unlike he FY01 site,had been verified to have substantial DNAPL presence by SRS engineers. The plan to use phoenix Geophysics SIP equipment could not materialize because Phoenix discontinued its SIP line and planned to introduce a new line in the Spring/Summer of 2003, which will be too late for us. So our planned second fieldwork of FY02 defaults again to Zonge Engineering and Research Organization equipment. (4) developments on the modeling and inversion of the new complex resistivity code, that will incorporate conductive coupling, stalled to give way to the

  1. 3D thermal modeling of TRISO fuel coupled with neutronic simulation

    SciTech Connect

    Hu, Jianwei; Uddin, Rizwan

    2010-01-01

    The Very High Temperature Gas Reactor (VHTR) is widely considered as one of the top candidates identified in the Next Generation Nuclear Power-plant (NGNP) Technology Roadmap under the U.S . Depanment of Energy's Generation IV program. TRlSO particle is a common element among different VHTR designs and its performance is critical to the safety and reliability of the whole reactor. A TRISO particle experiences complex thermo-mechanical changes during reactor operation in high temperature and high burnup conditions. TRISO fuel performance analysis requires evaluation of these changes on micro scale. Since most of these changes are temperature dependent, 3D thermal modeling of TRISO fuel is a crucial step of the whole analysis package. In this paper, a 3D numerical thermal model was developed to calculate temperature distribution inside TRISO and pebble under different scenarios. 3D simulation is required because pebbles or TRISOs are always subjected to asymmetric thermal conditions since they are randomly packed together. The numerical model was developed using finite difference method and it was benchmarked against ID analytical results and also results reported from literature. Monte-Carlo models were set up to calculate radial power density profile. Complex convective boundary condition was applied on the pebble outer surface. Three reactors were simulated using this model to calculate temperature distribution under different power levels. Two asymmetric boundary conditions were applied to the pebble to test the 3D capabilities. A gas bubble was hypothesized inside the TRISO kernel and 3D simulation was also carried out under this scenario. Intuition-coherent results were obtained and reported in this paper.

  2. Quantitative moment study and coupling of 4 f rare earth and 3 d metal by transmitted electrons

    NASA Astrophysics Data System (ADS)

    Fu, X.; Warot-Fonrose, B.; Arras, R.; Dumesnil, K.; Serin, V.

    2016-10-01

    We report a simultaneous investigation of 3 d and 4 f magnetic moments by exploring the Fe -L2 ,3 and Dy -M4 ,5 electron energy-loss edges of a DyF e2/YF e2 superlattice using the energy-loss magnetic chiral dichroism (EMCD) technique. Specific EMCD sum rules for M4 ,5 edges were established and carefully applied to the dichroic signal at Dy -M4 ,5 edges, giving an orbital to the effective spin moment ratio of 5.1 ±1.8 . With dynamic diffraction effects considered, the opposite signs of Fe -L3 and Dy -M5 dichroic peaks unambiguously indicate the antiparallel alignment of net Fe 3 d and Dy 4 f moments. The EMCD technique is shown to be an effective tool to locally characterize the 4 f moment of rare earth elements and study 3 d -4 f moment coupling.

  3. Simulation of unsteady state performance of a secondary air system by the 1D-3D-Structure coupled method

    NASA Astrophysics Data System (ADS)

    Wu, Hong; Li, Peng; Li, Yulong

    2016-02-01

    This paper describes the calculation method for unsteady state conditions in the secondary air systems in gas turbines. The 1D-3D-Structure coupled method was applied. A 1D code was used to model the standard components that have typical geometric characteristics. Their flow and heat transfer were described by empirical correlations based on experimental data or CFD calculations. A 3D code was used to model the non-standard components that cannot be described by typical geometric languages, while a finite element analysis was carried out to compute the structural deformation and heat conduction at certain important positions. These codes were coupled through their interfaces. Thus, the changes in heat transfer and structure and their interactions caused by exterior disturbances can be reflected. The results of the coupling method in an unsteady state showed an apparent deviation from the existing data, while the results in the steady state were highly consistent with the existing data. The difference in the results in the unsteady state was caused primarily by structural deformation that cannot be predicted by the 1D method. Thus, in order to obtain the unsteady state performance of a secondary air system more accurately and efficiently, the 1D-3D-Structure coupled method should be used.

  4. A 3-D variational assimilation scheme in coupled transport-biogeochemical models: Forecast of Mediterranean biogeochemical properties.

    PubMed

    Teruzzi, Anna; Dobricic, Srdjan; Solidoro, Cosimo; Cossarini, Gianpiero

    2014-01-01

    [1] Increasing attention is dedicated to the implementation of suitable marine forecast systems for the estimate of the state of the ocean. Within the framework of the European MyOcean infrastructure, the pre-existing short-term Mediterranean Sea biogeochemistry operational forecast system has been upgraded by assimilating remotely sensed ocean color data in the coupled transport-biogeochemical model OPATM-BFM using a 3-D variational data assimilation (3D-VAR) procedure. In the present work, the 3D-VAR scheme is used to correct the four phytoplankton functional groups included in the OPATM-BFM in the period July 2007 to September 2008. The 3D-VAR scheme decomposes the error covariance matrix using a sequence of different operators that account separately for vertical covariance, horizontal covariance, and covariance among biogeochemical variables. The assimilation solution is found in a reduced dimensional space, and the innovation for the biogeochemical variables is obtained by the sequential application of the covariance operators. Results show a general improvement in the forecast skill, providing a correction of the basin-scale bias of surface chlorophyll concentration and of the local-scale spatial and temporal dynamics of typical bloom events. Further, analysis of the assimilation skill provides insights into the functioning of the model. The computational costs of the assimilation scheme adopted are low compared to other assimilation techniques, and its modular structure facilitates further developments. The 3D-VAR scheme results especially suitable for implementation within a biogeochemistry operational forecast system.

  5. Design and performance of a fiber array coupled multi-channel photon counting, 3D imaging, airborne lidar system

    NASA Astrophysics Data System (ADS)

    Huang, Genghua; Shu, Rong; Hou, Libing; Li, Ming

    2014-06-01

    Photon counting lidar has an ultra-high sensitivity which can be hundreds even thousands of times higher than the linear detection lidar. It can significantly increase the system's capability of detection rang and imaging density, saving size and power consumings in airborne or space-borne applications. Based on Geiger-mode Si avalanche photodiodes (Si-APD), a prototype photon counting lidar which used 8 APDs coupled with a 1×8-pixel fiber array has been made in June, 2011. The experiments with static objects showed that the photon counting lidar could operate in strong solar background with 0.04 receiving photoelectrons on average. Limited by less counting times in moving platforms, the probability of detection and the 3D imaging density would be lower than that in static platforms. In this paper, a latest fiber array coupled multi-channel photon counting, 3D imaging, airborne lidar system is introduced. The correlation range receiver algorithm of photon counting 3D imaging is improved for airborne signal photon events extraction and noise filter. The 3D imaging experiments in the helicopter shows that the false alarm rate is less than 6×10-7, and the correct rate is better than 99.9% with 4 received photoelectrons and 0.7MHz system noise on average.

  6. Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling

    EPA Science Inventory

    Numerical modeling has emerged over the last several decades as a widely accepted tool for investigations in environmental sciences. In estuarine research, hydrodynamic and ecological models have moved along parallel tracks with regard to complexity, refinement, computational po...

  7. Progress and Challenges in Coupled Hydrodynamic-Ecological Estuarine Modeling

    EPA Science Inventory

    Numerical modeling has emerged over the last several decades as a widely accepted tool for investigations in environmental sciences. In estuarine research, hydrodynamic and ecological models have moved along parallel tracks with regard to complexity, refinement, computational po...

  8. A hydrodynamics-reaction kinetics coupled model for evaluating bioreactors derived from CFD simulation.

    PubMed

    Wang, Xu; Ding, Jie; Guo, Wan-Qian; Ren, Nan-Qi

    2010-12-01

    Investigating how a bioreactor functions is a necessary precursor for successful reactor design and operation. Traditional methods used to investigate flow-field cannot meet this challenge accurately and economically. Hydrodynamics model can solve this problem, but to understand a bioreactor in sufficient depth, it is often insufficient. In this paper, a coupled hydrodynamics-reaction kinetics model was formulated from computational fluid dynamics (CFD) code to simulate a gas-liquid-solid three-phase biotreatment system for the first time. The hydrodynamics model is used to formulate prediction of the flow field and the reaction kinetics model then portrays the reaction conversion process. The coupled model is verified and used to simulate the behavior of an expanded granular sludge bed (EGSB) reactor for biohydrogen production. The flow patterns were visualized and analyzed. The coupled model also demonstrates a qualitative relationship between hydrodynamics and biohydrogen production. The advantages and limitations of applying this coupled model are discussed.

  9. European Pressurized water Reactor (EPR) SAR ATWS Accident Analyses by using 3D Code Internal Coupling Method

    SciTech Connect

    Gagner, Renata; Lafitte, Helene; Dormeau, Pascal; Stoudt, Roger H.

    2004-07-01

    Anticipated Transients Without Scram (ATWS) accident analyses make part of the Safety Analysis Report of the European Pressurized water Reactor (EPR), covering Risk Reduction Category A (Core Melt Prevention) events. This paper deals with three of the most penalizing RRC-A sequences of ATWS caused by mechanical blockage of the control/shutdown rods, regarding their consequences on the Reactor Coolant System (RCS) and core integrity. A new 3D code internal coupling calculation method has been introduced. (authors)

  10. 3D micro-lenses for free space intra-chip coupling in photonic-integrated circuits (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Thomas, Robert; Williams, Gwilym I.; Ladak, Sam; Smowton, Peter M.

    2017-02-01

    The integration of multiple optical elements on a common substrate to create photonic integrated circuits (PIC) has been successfully applied in: fibre-optic communications, photonic computing and optical sensing. The push towards III-Vs on silicon promises a new generation of integrated devices that combine the advantages of both integrated electronics and optics in a single substrate. III-V edge emitting laser diodes offer high efficiency and low threshold currents making them ideal candidates for the optically active elements of the next generation of PICs. Nevertheless, the highly divergent and asymmetric beam shapes intrinsic to these devices limits the efficiency with which optical elements can be free space coupled intra-chip; a capability particularly desirable for optical sensing applications e.g. [1]. Furthermore, the monolithic nature of the integrated approach prohibits the use of macroscopic lenses to improve coupling. However, with the advent of 3D direct laser writing, three dimensional lenses can now be manufactured on a microscopic-scale [2], making the use of micro-lens technology for enhanced free space coupling of integrated optical elements feasible. Here we demonstrate the first use of 3D micro-lenses to improve the coupling efficiency of monolithically integrated lasers. Fabricated from IP-dip photoresist using a Nanoscribe GmbH 3D lithography tool, the lenses are embedded directly onto a structured GaInP/AlGaInP substrate containing arrays of ridge lasers free space coupled to one another via a 200 μm air gap. We compare the coupling efficiency of these lasers with and without micro-lenses through photo-voltage and beam profile measurements and discuss optimisation of lens design.

  11. Dynamic diffraction-limited light-coupling of 3D-maneuvered wave-guided optical waveguides.

    PubMed

    Villangca, Mark; Bañas, Andrew; Palima, Darwin; Glückstad, Jesper

    2014-07-28

    We have previously proposed and demonstrated the targeted-light delivery capability of wave-guided optical waveguides (WOWs). As the WOWs are maneuvered in 3D space, it is important to maintain efficient light coupling through the waveguides within their operating volume. We propose the use of dynamic diffractive techniques to create diffraction-limited spots that will track and couple to the WOWs during operation. This is done by using a spatial light modulator to encode the necessary diffractive phase patterns to generate the multiple and dynamic coupling spots. The method is initially tested for a single WOW and we have experimentally demonstrated dynamic tracking and coupling for both lateral and axial displacements.

  12. Coupling between Microstrip Lines Embedded in Polyimide Layers for 3D-MMICs on Si

    NASA Technical Reports Server (NTRS)

    Ponchak, George E.; Tentzeris, Emmanouil M.; Papapolymerou, John

    2001-01-01

    Three-dimensional circuits built upon multiple layers of polyimide are required for constructing SilSiGe monolithic microwavdmillimeter-wave integrated circuits on CMOS (low resistivity) Si wafers. However, the closely spaced transmission lines are susceptible to high levels of coupling, which degrades circuit performance. In this paper, Finite Difference Time Domain (FDTD) analysis and measured characteristics of novel shielding structures that significantly reduce coupling between embedded microstrip lines are presented. A discussion of the electric and magnetic field distributions for the coupled microstrip lines is presented to provide a physical rationale for the presented results.

  13. A Coupled Finite-Volume Model for 2-D Surface and 3-D Subsurface Flows

    USDA-ARS?s Scientific Manuscript database

    Surface-subsurface interactions are an intrinsic component of the hydrologic response within a watershed; therefore, hydrologic modeling tools should consider these interactions to provide reliable predictions, especially during rainfall-runoff processes. This paper presents a fully implicit coupled...

  14. Analysis of stratification patterns in river-influenced mesotidal and macrotidal estuaries using 3D hydrodynamic modelling and K-means clustering

    NASA Astrophysics Data System (ADS)

    Bárcena, Javier F.; García-Alba, Javier; García, Andrés; Álvarez, César

    2016-11-01

    A methodology to determine the spatial and temporal evolution of stratification in estuaries driven by astronomical tides and river discharges was developed and is presented here. Using a 3D hydrodynamic model, the variation of estuarine currents, water levels and densities was investigated under different realistic forcing conditions. These conditions were classified from a long-term period (>30 years) of river flows and tidal water levels by a K-means clustering approach suggested by Bárcena et al. (2015). The methodology allows computing the location of mixed, partially mixed/stratified and stratified areas in tidal river estuaries along a continuum by means of Richardson's Layer number and the frequency of every model scenario. In order to illustrate the power of the method, it was applied to a case study, the Suances Estuary. In the application case, the Suances Estuary was vertically mixed at its innermost part due to riverine influence. At the outer part, it was also vertically mixed due to the turbulence caused by tidal action. At the intermediate section, it was partially mixed in the main channel or stratified in intertidal areas due to the combined action of forcing, depth gradients between the main channel and intertidal areas, and salinity variations in the water column.

  15. Coupling Between Microstrip Lines Embedded in Polyimide Layers for 3D-MMICs on Si

    NASA Technical Reports Server (NTRS)

    Ponchak, George E.; Tentzeris, Emmanouil M.; Papapolymerou, John

    2001-01-01

    Three-dimensional circuits built upon multiple layers of polyimide are required for constructing Si/SiGe monolithic microwave/millimeter-wave integrated circuits on CMOS (low resistivity) Si wafers. However, the closely spaced transmission lines are susceptible to high levels of coupling, which degrades circuit performance. In this paper, Finite Difference Time Domain (FDTD) analysis and measured characteristics of novel shielding structures that significantly reduce coupling between embedded microstrip lines are presented.

  16. 2D fluid model analysis for the effect of 3D gas flow on a capacitively coupled plasma deposition reactor

    NASA Astrophysics Data System (ADS)

    Kim, Ho Jun; Lee, Hae June

    2016-06-01

    The wide applicability of capacitively coupled plasma (CCP) deposition has increased the interest in developing comprehensive numerical models, but CCP imposes a tremendous computational cost when conducting a transient analysis in a three-dimensional (3D) model which reflects the real geometry of reactors. In particular, the detailed flow features of reactive gases induced by 3D geometric effects need to be considered for the precise calculation of radical distribution of reactive species. Thus, an alternative inclusive method for the numerical simulation of CCP deposition is proposed to simulate a two-dimensional (2D) CCP model based on the 3D gas flow results by simulating flow, temperature, and species fields in a 3D space at first without calculating the plasma chemistry. A numerical study of a cylindrical showerhead-electrode CCP reactor was conducted for particular cases of SiH4/NH3/N2/He gas mixture to deposit a hydrogenated silicon nitride (SiN x H y ) film. The proposed methodology produces numerical results for a 300 mm wafer deposition reactor which agree very well with the deposition rate profile measured experimentally along the wafer radius.

  17. Collective Dynamics in a Binary Mixture of Hydrodynamically Coupled Microrotors

    NASA Astrophysics Data System (ADS)

    Yeo, Kyongmin; Lushi, Enkeleida; Vlahovska, Petia M.

    2015-05-01

    We study, numerically, the collective dynamics of self-rotating nonaligning particles by considering a monolayer of spheres driven by constant clockwise or counterclockwise torques. We show that hydrodynamic interactions alter the emergence of large-scale dynamical patterns compared to those observed in dry systems. In dilute suspensions, the flow stirred by the rotors induces clustering of opposite-spin rotors, while at higher densities same-spin rotors phase separate. Above a critical rotor density, dynamic hexagonal crystals form. Our findings underscore the importance of inclusion of the many-body, long-range hydrodynamic interactions in predicting the phase behavior of active particles.

  18. Investigation on Interface Algorithms for Coupling of Geophysical Fluid Dynamics and Fully 3D Fluid Dynamics Models

    NASA Astrophysics Data System (ADS)

    Qu, K.; Tang, H.

    2012-12-01

    In order to study many emerging coastal problems such as tidal power generation and its environmental impact, it is urgently needed to develop our capabilities to predict small-scale, fully three dimensional (3D) phenomena in coastal ocean flows, especially those in nearshore regions. A feasible as well as effective approach for the development is a hybrid method that couples different models designed for physics at different scales; a fully 3D fluid dynamics (FDE) model is used to capture local flows, and it is coupled with a geophysical physics fluid dynamics (GFD) model that is employed to predict large-scale background currents. A crucial issue in realizing such coupling is to correctly as well as accurately exchange solutions of the FDE and GFD models at their interfaces. It has been found that frequently artificial oscillations occur at the interfaces, and they may pollute the overall solution for the problems. It is desirable for the coupling algorithms to assure seamless transition between solutions of the two models and no artifacts at the interfaces. In this study, we investigate different treatments including direct interpolation to exchange solutions of the two models at the interfaces, and analyze solution quality and other aspects associated with different algorithms when they are applied to test flows. Discussion will be made on how to improve solution quality towards seamless solution transition at the model interfaces.

  19. Tightly Coupled Low Cost 3D RISS/GPS Integration Using a Mixture Particle Filter for Vehicular Navigation

    PubMed Central

    Georgy, Jacques; Noureldin, Aboelmagd

    2011-01-01

    Satellite navigation systems such as the global positioning system (GPS) are currently the most common technique used for land vehicle positioning. However, in GPS-denied environments, there is an interruption in the positioning information. Low-cost micro-electro mechanical system (MEMS)-based inertial sensors can be integrated with GPS and enhance the performance in denied GPS environments. The traditional technique for this integration problem is Kalman filtering (KF). Due to the inherent errors of low-cost MEMS inertial sensors and their large stochastic drifts, KF, with its linearized models, has limited capabilities in providing accurate positioning. Particle filtering (PF) was recently suggested as a nonlinear filtering technique to accommodate for arbitrary inertial sensor characteristics, motion dynamics and noise distributions. An enhanced version of PF called the Mixture PF is utilized in this study to perform tightly coupled integration of a three dimensional (3D) reduced inertial sensors system (RISS) with GPS. In this work, the RISS consists of one single-axis gyroscope and a two-axis accelerometer used together with the vehicle’s odometer to obtain 3D navigation states. These sensors are then integrated with GPS in a tightly coupled scheme. In loosely-coupled integration, at least four satellites are needed to provide acceptable GPS position and velocity updates for the integration filter. The advantage of the tightly-coupled integration is that it can provide GPS measurement update(s) even when the number of visible satellites is three or lower, thereby improving the operation of the navigation system in environments with partial blockages by providing continuous aiding to the inertial sensors even during limited GPS satellite availability. To effectively exploit the capabilities of PF, advanced modeling for the stochastic drift of the vertically aligned gyroscope is used. In order to benefit from measurement updates for such drift, which are

  20. Tightly coupled low cost 3D RISS/GPS integration using a mixture particle filter for vehicular navigation.

    PubMed

    Georgy, Jacques; Noureldin, Aboelmagd

    2011-01-01

    Satellite navigation systems such as the global positioning system (GPS) are currently the most common technique used for land vehicle positioning. However, in GPS-denied environments, there is an interruption in the positioning information. Low-cost micro-electro mechanical system (MEMS)-based inertial sensors can be integrated with GPS and enhance the performance in denied GPS environments. The traditional technique for this integration problem is Kalman filtering (KF). Due to the inherent errors of low-cost MEMS inertial sensors and their large stochastic drifts, KF, with its linearized models, has limited capabilities in providing accurate positioning. Particle filtering (PF) was recently suggested as a nonlinear filtering technique to accommodate for arbitrary inertial sensor characteristics, motion dynamics and noise distributions. An enhanced version of PF called the Mixture PF is utilized in this study to perform tightly coupled integration of a three dimensional (3D) reduced inertial sensors system (RISS) with GPS. In this work, the RISS consists of one single-axis gyroscope and a two-axis accelerometer used together with the vehicle's odometer to obtain 3D navigation states. These sensors are then integrated with GPS in a tightly coupled scheme. In loosely-coupled integration, at least four satellites are needed to provide acceptable GPS position and velocity updates for the integration filter. The advantage of the tightly-coupled integration is that it can provide GPS measurement update(s) even when the number of visible satellites is three or lower, thereby improving the operation of the navigation system in environments with partial blockages by providing continuous aiding to the inertial sensors even during limited GPS satellite availability. To effectively exploit the capabilities of PF, advanced modeling for the stochastic drift of the vertically aligned gyroscope is used. In order to benefit from measurement updates for such drift, which are

  1. Integrating sediment biogeochemistry into 3D oceanic models: A study of benthic-pelagic coupling in the Black Sea

    NASA Astrophysics Data System (ADS)

    Capet, Arthur; Meysman, Filip J. R.; Akoumianaki, Ioanna; Soetaert, Karline; Grégoire, Marilaure

    2016-05-01

    Three-dimensional (3D) ecosystem models of shelf environments should properly account for the biogeochemical cycling within the sea floor. However, a full and explicit representation of sediment biogeochemistry into 3D ocean models is computationally demanding. Here, we describe a simplified approach to include benthic processes in 3D ocean models, which includes a parameterization of the different pathways for organic matter mineralization and allows for organic matter remobilization by bottom currents and waves. This efficient approach enables decadal simulations that resolve the inertial contribution of the sea floor to the biogeochemical cycling in shelf environments. The model was implemented to analyze the benthic-pelagic coupling in the northwestern shelf of the Black Sea. Three distinct biogeochemical provinces were identified on the basis of fluxes and rates associated with benthic-pelagic coupling. Our model simulations suitably capture the seasonal variability of in situ flux data as well as their regional variation, which stresses the importance of incorporating temporally varying sediment biogeochemistry and resuspension/redeposition cycles in shelf ecosystem models.

  2. Influence of Young's moduli in 3D fluid-structure coupled models of the human cochlea

    NASA Astrophysics Data System (ADS)

    Böhnke, Frank; Semmelbauer, Sebastian; Marquardt, Torsten

    2015-12-01

    The acoustic wave propagation in the human cochlea was studied using a tapered box-model with linear assumptions respective to all mechanical parameters. The discretisation and evaluation is conducted by a commercial finite element package (ANSYS). The main difference to former models of the cochlea was the representation of the basilar membrane by a 3D elastic solid. The Young's moduli of this solid were modified to study their influence on the travelling wave. The lymph in the scala vestibuli and scala tympani was represented by a viscous and nearly incompressible fluid finite element approach. Our results show the maximum displacement for f = 2kHz at half of the length of the cochlea in accordance with former experiments. For low frequencies f <200 Hz nearly zero phase shifts were found, whereas for f =1 kHz it reaches values up to -12 cycles depending on the degree of orthotropy.

  3. Plasma Biomarker Discovery Using 3D Protein Profiling Coupled with Label-Free Quantitation

    PubMed Central

    Beer, Lynn A.; Tang, Hsin-Yao; Barnhart, Kurt T.; Speicher, David W.

    2011-01-01

    In-depth quantitative profiling of human plasma samples for biomarker discovery remains quite challenging. One promising alternative to chemical derivatization with stable isotope labels for quantitative comparisons is direct, label-free, quantitative comparison of raw LC–MS data. But, in order to achieve high-sensitivity detection of low-abundance proteins, plasma proteins must be extensively pre-fractionated, and results from LC–MS runs of all fractions must be integrated efficiently in order to avoid misidentification of variations in fractionation from sample to sample as “apparent” biomarkers. This protocol describes a powerful 3D protein profiling method for comprehensive analysis of human serum or plasma proteomes, which combines abundant protein depletion and high-sensitivity GeLC–MS/MS with label-free quantitation of candidate biomarkers. PMID:21468938

  4. Coupling 2-D cylindrical and 3-D x-y-z transport computations

    SciTech Connect

    Abu-Shumays, I.K.; Yehnert, C.E.; Pitcairn, T.N.

    1998-06-30

    This paper describes a new two-dimensional (2-D) cylindrical geometry to three-dimensional (3-D) rectangular x-y-z splice option for multi-dimensional discrete ordinates solutions to the neutron (photon) transport equation. Of particular interest are the simple transformations developed and applied in order to carry out the required spatial and angular interpolations. The spatial interpolations are linear and equivalent to those applied elsewhere. The angular interpolations are based on a high order spherical harmonics representation of the angular flux. Advantages of the current angular interpolations over previous work are discussed. An application to an intricate streaming problem is provided to demonstrate the advantages of the new method for efficient and accurate prediction of particle behavior in complex geometries.

  5. Simulating HFIR Core Thermal Hydraulics Using 3D-2D Model Coupling

    SciTech Connect

    Travis, Adam R; Freels, James D; Ekici, Kivanc

    2013-01-01

    A model utilizing interdimensional variable coupling is presented for simulating the thermal hydraulic interactions of the High Flux Isotope Reactor (HFIR) core at Oak Ridge National Laboratory (ORNL). The model s domain consists of a single, explicitly represented three-dimensional fuel plate and a simplified two-dimensional coolant channel slice. In simplifying the coolant channel, and thus the number of mesh points in which the Navier-Stokes equations must be solved, the computational cost and solution time are both greatly reduced. In order for the reduced-dimension coolant channel to interact with the explicitly represented fuel plate, however, interdimensional variable coupling must be enacted along all shared boundaries. The primary focus of this paper is in detailing the collection, storage, passage, and application of variables across this interdimensional interface. Comparisons are made showing the general speed-up associated with this simplified coupled model.

  6. Janocchio--a Java applet for viewing 3D structures and calculating NMR couplings and NOEs.

    PubMed

    Evans, David A; Bodkin, Michael J; Baker, S Richard; Sharman, Gary J

    2007-07-01

    We present a Java applet, based on the open source Jmol program, which allows the calculation of coupling constants and NOEs from a three-dimensional structure. The program has all the viewing features of Jmol, but adds the capability to calculate both H-H and H-C 3-bond couplings constants. In the case of H--H couplings, the Altona equation is used to perform this. The program also calculates NOEs using the full relaxation matrix approach. All these calculations are driven from a simple point and click interface. The program can calculate values for multi-structure files, and can produce input files for the conformational fitting program NAMFIS.

  7. Study of the plankton ecosystem variability using a coupled hydrodynamics biogeochemical modelling in the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Kessouri, Fayçal; Ulses, Caroline; Estournel, Claude; Marsaleix, Patrick

    2015-04-01

    The Mediterranean Sea presents a wide variety of trophic regimes since the large and intense spring bloom of the North-Western Mediterranean Sea (NWMS) that follows winter convection to the extreme oligotrophic regions of the South-eastern basin. The Mediterranean Sea displays a strong time variability revealing its high sensitivity to climate and anthropic pressures. In this context, it is crucial to develop tools allowing to understand the evolution of the Mediterranean hydrology and marine ecosystem as a response to external forcing. Numerical coupled hydrodynamic and biogeochemical modelling carefully calibrated in the different regions of the basin is the only tool that can answer this question. However, this important step of calibration is particularly difficult because of the lack of coherent sets of data describing the seasonal evolution of the main parameters characterizing the physical and biogeochemical environment in the different sub-basins. The chlorophyll satellite data from 4km MODIS products, a multiple in situ data from MerMEX MOOSE and DEWEX cruises and Bio-Argo floats from NAOS project are believed to be an opportunity to strongly improve the realism of ecosystem models. The model is a 3D coupled simulation using NemoMed12 for hydrodynamics and ECO 3MS for biogeochemistry and covers the whole Mediterranean Sea and runs at 1/12°. The relevant variables mentioned are phytoplankton, organic and inorganic matters faced to water masses dynamics, over ten years since summer 2003. After a short validation, we will expose two topics: First, through this coupling we quantify the nutrients fluxes across the Mediterranean straits over the years. For example, we found an annual net average around 150 Giga moles NO3 per year at Gibraltar, where we expect low annual fluctuations. In contrast, the Strait of Sicily shows greater annual variability going from 70 to 92 Giga moles NO3 per year. All the fluxes are resumed in a detailed diagram of the transport

  8. Modeling partially coupled objects with smooth particle hydrodynamics

    SciTech Connect

    Wingate, C.A.

    1996-10-01

    A very simple phenomenological model is presented to model objects that are partially coupled (i.e. welded or bonded) where usually the coupled interface is weaker than the bulk material. The model works by letting objects fully interact in compression and having the objects only partially interact in tension. A disconnect factor is provided to adjust the tensile interaction to simulate coupling strengths. Three cases of an example impact calculation are shown-no coupling, full coupling and partial coupling.

  9. Efficient global optimization based 3D carotid AB-LIB MRI segmentation by simultaneously evolving coupled surfaces.

    PubMed

    Ukwatta, Eranga; Yuan, Jing; Rajchl, Martin; Fenster, Aaron

    2012-01-01

    Magnetic resonance (MR) imaging of carotid atherosclerosis biomarkers are increasingly being investigated for the risk assessment of vulnerable plaques. A fast and robust 3D segmentation of the carotid adventitia (AB) and lumen-intima (LIB) boundaries can greatly alleviate the measurement burden of generating quantitative imaging biomarkers in clinical research. In this paper, we propose a novel global optimization-based approach to segment the carotid AB and LIB from 3D T1-weighted black blood MR images, by simultaneously evolving two coupled surfaces with enforcement of anatomical consistency of the AB and LIB. We show that the evolution of two surfaces at each discrete time-frame can be optimized exactly and globally by means of convex relaxation. Our continuous max-flow based algorithm is implemented in GPUs to achieve high computational performance. The experiment results from 16 carotid MR images show that the algorithm obtained high agreement with manual segmentations and achieved high repeatability in segmentation.

  10. A 3-D variational assimilation scheme in coupled transport-biogeochemical models: Forecast of Mediterranean biogeochemical properties

    PubMed Central

    Teruzzi, Anna; Dobricic, Srdjan; Solidoro, Cosimo; Cossarini, Gianpiero

    2014-01-01

    [1] Increasing attention is dedicated to the implementation of suitable marine forecast systems for the estimate of the state of the ocean. Within the framework of the European MyOcean infrastructure, the pre-existing short-term Mediterranean Sea biogeochemistry operational forecast system has been upgraded by assimilating remotely sensed ocean color data in the coupled transport-biogeochemical model OPATM-BFM using a 3-D variational data assimilation (3D-VAR) procedure. In the present work, the 3D-VAR scheme is used to correct the four phytoplankton functional groups included in the OPATM-BFM in the period July 2007 to September 2008. The 3D-VAR scheme decomposes the error covariance matrix using a sequence of different operators that account separately for vertical covariance, horizontal covariance, and covariance among biogeochemical variables. The assimilation solution is found in a reduced dimensional space, and the innovation for the biogeochemical variables is obtained by the sequential application of the covariance operators. Results show a general improvement in the forecast skill, providing a correction of the basin-scale bias of surface chlorophyll concentration and of the local-scale spatial and temporal dynamics of typical bloom events. Further, analysis of the assimilation skill provides insights into the functioning of the model. The computational costs of the assimilation scheme adopted are low compared to other assimilation techniques, and its modular structure facilitates further developments. The 3D-VAR scheme results especially suitable for implementation within a biogeochemistry operational forecast system. PMID:26213670

  11. Using High Frequency Focused Water-Coupled Ultrasound for 3-D Surface Depression Profiling

    NASA Technical Reports Server (NTRS)

    Roth, Don J.; Whalen, Mike F.; Hendricks, J. Lynne; Bodis, James R.

    1999-01-01

    Surface topography is an important variable in the performance of many industrial components and is normally measured with diamond-tip profilometry over a small area or using optical scattering methods for larger area measurement. A prior study was performed demonstrating that focused air-coupled ultrasound at 1 MHz was capable of profiling surfaces with 25 micron depth resolution and 400 micron lateral resolution over a 1.4 mm depth range. In this article, the question of whether higher-frequency focused water-coupled ultrasound can improve on these specifications is addressed. 10 and 25 MHz focused ultrasonic transducers were employed in the water-coupled mode. Time-of-flight images of the sample surface were acquired and converted to depth / surface profile images using the simple relation (d = V*t/2) between distance (d), time-of-flight (t), and the velocity of sound in water (V). Results are compared for the two frequencies used and with those from the 1 MHz air-coupled configuration.

  12. Identification of couple-stress moduli of vertebral trabecular bone based on the 3D internal architectures.

    PubMed

    Goda, Ibrahim; Ganghoffer, Jean-François

    2015-11-01

    The purpose of this paper is to develop a homogeneous, orthotropic couple-stress continuum model as a substitute of the 3D periodic heterogeneous cellular solid model of vertebral trabecular bone. Vertebral trabecular bone is modeled as a porous material with an idealized periodic structure made of 3D open cubic cells, which is effectively orthotropic. The chosen architecture is based on studies of samples taken from the central part of vertebral bodies. The effective properties are obtained based on the response of the representative volume element under prescribed boundary conditions. Mixed boundary conditions comprising both traction and displacement boundary conditions are applied on the structure boundaries. In this contribution, the effective mechanical constants of the effective couple-stress continuum are deduced by an equivalent strain energy method. The characteristic lengths for bending and torsion are identified from the resulting homogenized orthotropic moduli. We conduct this study computationally using a finite element approach. Vertebral trabecular bone is modeled either as a cellular solid or as a two-phase material consisting of bone tissue (stiff phase) forming a trabecular network, and a surrounding soft tissue referring to the bone marrow present in the pores. Both the bone tissue forming the network and the pores are assumed to be homogeneous linear elastic, and isotropic media. The scale effects on the predicted couple stress moduli of these networks are investigated by varying the size of the bone specimens over which the boundary conditions are applied. The analysis using mixed boundary conditions gives results that are independent of unit cell size when computing the first couple stress tensor, while it is dependent on the cell size as to the second couple stress tensor moduli. This study provides overall guidance on how the size of the trabecular specimen influence couple stresses elastic moduli of cellular materials, with focus on bones

  13. Gradient-echo 3D imaging of Rb polarization in fiber-coupled atomic magnetometer.

    PubMed

    Savukov, I

    2015-07-01

    The analogy between atomic and nuclear spins is exploited to implement 3D imaging of polarization inside the cell of an atomic magnetometer. The resolution of 0.8mm×1.2mm×1.4mm has been demonstrated with the gradient-echo imaging method. The imaging can be used in many applications. One such an application is the evaluation of active volume of an atomic magnetometer for sensitivity analysis and optimization. It has been found that imaging resolution is limited due to de-phasing from spin-exchange collisions and diffusion in the presence of gradients, and for a given magnetometer operational parameters, the imaging sequence has been optimized. Diffusion decay of the signal in the presence of gradients has been modeled numerically and analytically, and the analytical results, which agreed with numerical simulations, have been used to fit the spin-echo gradient measurements to extract the diffusion coefficient. The diffusion coefficient was found in agreement with previous measurements. Copyright © 2015 Elsevier Inc. All rights reserved.

  14. Analysis of Annular Thermoelectric Couples with Nonuniform Temperature Distribution by Means of 3-D Multiphysics Simulation

    NASA Astrophysics Data System (ADS)

    Bauknecht, Andreas; Steinert, Torsten; Spengler, Carsten; Suck, Gerrit

    2013-07-01

    Thermoelectric (TE) modules with annular geometry are very attractive for waste heat recovery within the automotive world, especially when integrated as stacks into tubular heat exchangers. The required temperature difference is built up between the coolant, which flows inside an inner tube, and the exhaust gas, which flows around an outer tube. The flow pattern of the exhaust gas can be axial or circumferential, which can lead to higher heat transfer coefficients on the outer surface of the tube. However, this multidimensional construction in combination with a complex flow pattern can lead to a nonuniform heat flux. Additionally, the system experiences a nonuniform temperature distribution which consequently leads to complex conditions regarding the electrical potential. The relevant effects are investigated using a three-dimensional (3-D) numerical model implemented in the computational fluid dynamics (CFD) simulation environment Star-CCM+. The model supports temperature-dependent characteristics of the materials, contact resistances, and parasitic effects in the TE module. Furthermore, it involves techniques to quickly find the exact maximum power point of the TE module with the given boundary conditions. Using the validated model the influence of the nonuniform temperature distribution is investigated with emphasis on the electrical output and TE efficiency.

  15. Weakly-coupled quasi-1D helical modes in disordered 3D topological insulator quantum wires

    NASA Astrophysics Data System (ADS)

    Dufouleur, J.; Veyrat, L.; Dassonneville, B.; Xypakis, E.; Bardarson, J. H.; Nowka, C.; Hampel, S.; Schumann, J.; Eichler, B.; Schmidt, O. G.; Büchner, B.; Giraud, R.

    2017-04-01

    Disorder remains a key limitation in the search for robust signatures of topological superconductivity in condensed matter. Whereas clean semiconducting quantum wires gave promising results discussed in terms of Majorana bound states, disorder makes the interpretation more complex. Quantum wires of 3D topological insulators offer a serious alternative due to their perfectly-transmitted mode. An important aspect to consider is the mixing of quasi-1D surface modes due to the strong degree of disorder typical for such materials. Here, we reveal that the energy broadening γ of such modes is much smaller than their energy spacing Δ, an unusual result for highly-disordered mesoscopic nanostructures. This is evidenced by non-universal conductance fluctuations in highly-doped and disordered Bi2Se3 and Bi2Te3 nanowires. Theory shows that such a unique behavior is specific to spin-helical Dirac fermions with strong quantum confinement, which retain ballistic properties over an unusually large energy scale due to their spin texture. Our result confirms their potential to investigate topological superconductivity without ambiguity despite strong disorder.

  16. Assessing soil water storage distribution under sprinkler irrigation by coupling 3D simulations and field observations

    NASA Astrophysics Data System (ADS)

    Taha, Uday; Shabeeb, Ahmed; dragonetti, giovanna; Lamaddalena, Nicola; Coppola, Antonio

    2016-04-01

    This work analyzed the variability of sprinkler irrigation application over a bare soil, both in terms of water application efficiency and uniformity, by integrating and comparing the information on the irrigation depth data (ID), as measured by catch cans, soil water storage in the upper root zone, as measured by TDR probes, and a 3D simulations of water flow in soils. Three irrigation tests were performed at three different pressures (2, 3 and 4 bar). A lateral water redistribution was observed and simulated after each irrigation event by comparing spatial distributions of site-specific water application efficiency (AEs), as well as ratios of site-specific actual water storage increase (SWEs) and irrigation depth (IDs) to the water content before irrigation. Because of soil water redistribution processes, distribution uniformity based on soil storages was systematically higher than the catch can uniformity. The obvious consequence of lateral water redistribution processes was that the soil smoothing action on non-uniformity observed at the surface increased both with depth and over time. At a given depth the uniformity of soil water storages always attained the same value, whatever the pressure considered and the catch can-based uniformity coefficient. It was concluded that, for the case of random distribution of ID, the uniformity of water storages is driven by the soil behavior rather than by the irrigation system.

  17. Weakly-coupled quasi-1D helical modes in disordered 3D topological insulator quantum wires

    PubMed Central

    Dufouleur, J.; Veyrat, L.; Dassonneville, B.; Xypakis, E.; Bardarson, J. H.; Nowka, C.; Hampel, S.; Schumann, J.; Eichler, B.; Schmidt, O. G.; Büchner, B.; Giraud, R.

    2017-01-01

    Disorder remains a key limitation in the search for robust signatures of topological superconductivity in condensed matter. Whereas clean semiconducting quantum wires gave promising results discussed in terms of Majorana bound states, disorder makes the interpretation more complex. Quantum wires of 3D topological insulators offer a serious alternative due to their perfectly-transmitted mode. An important aspect to consider is the mixing of quasi-1D surface modes due to the strong degree of disorder typical for such materials. Here, we reveal that the energy broadening γ of such modes is much smaller than their energy spacing Δ, an unusual result for highly-disordered mesoscopic nanostructures. This is evidenced by non-universal conductance fluctuations in highly-doped and disordered Bi2Se3 and Bi2Te3 nanowires. Theory shows that such a unique behavior is specific to spin-helical Dirac fermions with strong quantum confinement, which retain ballistic properties over an unusually large energy scale due to their spin texture. Our result confirms their potential to investigate topological superconductivity without ambiguity despite strong disorder. PMID:28374744

  18. 3D axonal network coupled to Microelectrode Arrays: A simulation model to study neuronal dynamics.

    PubMed

    Appali, Revathi; Sriperumbudur, Kiran K; van Rienen, Ursula

    2015-01-01

    Action Potentials in a neuron are generated and propagated by exchange of ions through the membrane. The model of Hodgkin and Huxley (HH) describes these time-dependent complex ion dynamics. We have implemented the FitzHugh-Nagumo model, one of the simplified versions of HH model on a pyramidal neuron with branches of axons to study the spontaneous activity of neurons. The network is then coupled to Micro-Electrode Arrays to record the extracellular potential in a neurochip environment. This in silico model is used to study the coupling of AP with the electrodes. Such a model is also a first step to investigate the morphological influence of neurons on their signaling properties.

  19. Simultaneous real-time 3D photoacoustic tomography and EEG for neurovascular coupling study in an animal model of epilepsy

    NASA Astrophysics Data System (ADS)

    Wang, Bo; Xiao, Jiaying; Jiang, Huabei

    2014-08-01

    Objective. Neurovascular coupling in epilepsy is poorly understood; its study requires simultaneous monitoring of hemodynamic changes and neural activity in the brain. Approach. Here for the first time we present a combined real-time 3D photoacoustic tomography (PAT) and electrophysiology/electroencephalography (EEG) system for the study of neurovascular coupling in epilepsy, whose ability was demonstrated with a pentylenetetrazol (PTZ) induced generalized seizure model in rats. Two groups of experiments were carried out with different wavelengths to detect the changes of oxy-hemoglobin (HbO2) and deoxy-hemoglobin (HbR) signals in the rat brain. We extracted the average PAT signals of the superior sagittal sinus (SSS), and compared them with the EEG signal. Main results. Results showed that the seizure process can be divided into three stages. A ‘dip’ lasting for 1-2 min in the first stage and the following hyperfusion in the second stage were observed. The HbO2 signal and the HbR signal were generally negatively correlated. The change of blood flow was also estimated. All the acquired results here were in accordance with other published results. Significance. Compared to other existing functional neuroimaging tools, the method proposed here enables reliable tracking of hemodynamic signal with both high spatial and high temporal resolution in 3D, so it is more suitable for neurovascular coupling study of epilepsy.

  20. The influence of plasma technology coupled to chemical grafting on the cell growth compliance of 3D hydroxyapatite scaffolds.

    PubMed

    Russo, Laura; Zanini, Stefano; Giannoni, Paolo; Landi, Elena; Villa, Anna; Sandri, Monica; Riccardi, Claudia; Quarto, Rodolfo; Doglia, Silvia M; Nicotra, Francesco; Cipolla, Laura

    2012-11-01

    The development of advanced materials with biomimetic features in order to elicit desired biological responses and to guarantee tissue biocompatibility is recently gaining attention for tissue engineering applications. Bioceramics, such as hydroxyapatite-based biomaterials are now used in a number of different applications throughout the body, covering all areas of the skeleton, due to their biological and chemical similarity to the inorganic phases of bones. When bioactive sintered hydroxyapatite (HA) is desired, biomolecular modification of these materials is needed. In the present work, we investigated the influence of plasma surface modification coupled to chemical grafting on the cell growth compliance of HA 3D scaffolds.

  1. Development of a 3D finite element model evaluating air-coupled ultrasonic measurements of nonlinear Rayleigh waves

    NASA Astrophysics Data System (ADS)

    Uhrig, Matthias P.; Kim, Jin-Yeon; Jacobs, Laurence J.

    2016-02-01

    This research presents a 3D numerical finite element (FE) model which, previously developed, precisely simulates non-contact, air-coupled measurements of nonlinear Rayleigh wave propagation. The commercial FE-solver ABAQUS is used to perform the simulations. First, frequency dependent pressure wave attenuation is investigated numerically to reconstruct the sound pressure distribution along the active surface of the non-contact receiver. Second, constitutive law and excitation source properties are optimized to match nonlinear ultrasonic experimental data. Finally, the FE-model data are fit with analytical solutions showing a good agreement and thus, indicating the significance of the study performed.

  2. A 3-D Coupled CFD-DSMC Solution Method With Application to the Mars Sample Return Orbiter

    NASA Technical Reports Server (NTRS)

    Glass, Christopher E.; Gnoffo, Peter A.

    2000-01-01

    A method to obtain coupled Computational Fluid Dynamics-Direct Simulation Monte Carlo (CFD-DSMC), 3-D flow field solutions for highly blunt bodies at low incidence is presented and applied to one concept of the Mars Sample Return Orbiter vehicle as a demonstration of the technique. CFD is used to solve the high-density blunt forebody flow defining an inflow boundary condition for a DSMC solution of the afterbody wake flow. By combining the two techniques in flow regions where most applicable, the entire mixed flow field is modeled in an appropriate manner.

  3. A 3D Model to Compute Lightning and HIRF Coupling Effects on Avionic Equipment of an Aircraft

    NASA Astrophysics Data System (ADS)

    Perrin, E.; Tristant, F.; Guiffaut, C.; Terrade, F.; Reineix, A.

    2012-05-01

    This paper describes the 3D FDTD model of an aircraft developed to compute the lightning and HIRF (High Intentity Radiated Fields) coupling effects on avionic equipment and all the wire harness associated. This virtual prototype aims at assisting the aircraft manufacturer during the lightning and HIRF certification processes. The model presented here permits to cover a frequency range from lightning spectrum to the low frequency HIRF domain, i.e. 0 to 100 MHz. Moreover, the entire aircraft, including the frame, the skin, the wire harness and the equipment are taken into account in only one model. Results obtained are compared to measurements on a real aircraft.

  4. Computer-Assisted 3D Structure Elucidation of Natural Products using Residual Dipolar Couplings.

    PubMed

    Troche-Pesqueira, Eduardo; Anklin, Clemens; Gil, Roberto R; Navarro-Vázquez, Armando

    2017-03-20

    An enhanced computer-assisted procedure for the determination of the relative configuration of natural products, which starts from the molecular formula and uses a combination of conventional 1D and 2D NMR spectra, and residual dipolar couplings (RDCs), is reported. Having already the data acquired (1D/2D NMR and RDCs), the procedure begins with the determination of the molecular constitution using standard computer-assisted structure elucidation (CASE) and is followed by fully automated determination of relative configuration through RDC analysis. In the case of moderately flexible molecules the simplest data-explaining conformational model is selected by the use of the Akaike information criterion.

  5. Three carbon-enhanced metal-poor dwarf stars from the SDSS. Chemical abundances from CO5BOLD 3D hydrodynamical model atmospheres

    NASA Astrophysics Data System (ADS)

    Behara, N. T.; Bonifacio, P.; Ludwig, H.-G.; Sbordone, L.; González Hernández, J. I.; Caffau, E.

    2010-04-01

    Context. The origin of carbon-enhanced metal-poor stars enriched with both s and r elements is highly debated. Detailed abundances of these types of stars are crucial to understand the nature of their progenitors. Aims: The aim of this investigation is to study in detail the abundances of SDSS J1349-0229, SDSS J0912+0216 and SDSS J1036+1212, three dwarf CEMP stars, selected from the Sloan Digital Sky Survey. Methods: Using high resolution VLT/UVES spectra (R ~ 30 000) we determine abundances for Li, C, N, O, Na, Mg, Al, Ca, Sc, Ti, Cr, Mn, Fe, Co, Ni and 21 neutron-capture elements. We made use of CO5BOLD 3D hydrodynamical model atmospheres in the analysis of the carbon, nitrogen and oxygen abundances. NLTE corrections for Ci and Oi lines were computed using the Kiel code. Results: We classify SDSS J1349-0229 and SDSS J0912+0216 as CEMP-r+s stars. SDSS J1036+1212 belongs to the class CEMP-no/s, with enhanced Ba, but deficient Sr, of which it is the third member discovered to date. Radial-velocity variations have been observed in SDSS J1349-0229, providing evidence that it is a member of a binary system. Conclusions: The chemical composition of the three stars is generally compatible with mass transfer from an AGB companion. However, many details remain difficult to explain. Most notably of those are the abundance of Li at the level of the Spite plateau in SDSS J1036+1212 and the large over-abundance of the pure r-process element Eu in all three stars. Based on observations obtained with the ESO Very Large Telescope at Paranal Observatory, Chile (programmes 078.D-0217 and 383.D-0927).

  6. Understanding Long-term, Large-scale Shoreline Change and the Sediment Budget on Fire Island, NY, using a 3D hydrodynamics-based model

    NASA Astrophysics Data System (ADS)

    List, J. H.; Safak, I.; Warner, J. C.; Schwab, W. C.; Hapke, C. J.; Lentz, E. E.

    2016-02-01

    The processes responsible for long-term (decadal) shoreline change and the related imbalance in the sediment budget on Fire Island, a 50 km long barrier island on the south coast of Long Island, NY, has been the subject of debate. The estimated net rate of sediment leaving the barrier at the west end of the island is approximately double the estimated net rate of sediment entering in the east, but the island-wide average sediment volume change associated with shoreline change is near zero and cannot account for this deficit. A long-held hypothesis is that onshore sediment flux from the inner continental shelf within the western half of the island is responsible for balancing the sediment budget. To investigate this possibility, we use a nested, 3-D, hydrodynamics-based modeling system (COAWST) to simulate the island-wide alongshore and cross-shore transport, in combination with shoreline change observations. The modeled, net alongshore transport gradients in the nearshore predict that the central part of Fire Island should be erosional, yet shoreline change observations show this area to be accretionary. We compare the model-predicted alongshore transport gradients with the flux gradients that would be required to generate the observed shoreline change, to give the pattern of sediment volume gains or losses that cannot be explained by the modeled alongshore transport gradients. Results show that the western 30 km of coast requires an input of sediment, supporting the hypothesis of onshore flux in this area. The modeled cross-shore flux of sediment between the shoreface and inner shelf is consistent these results, with onshore-directed bottom currents creating an environment more conducive to onshore sediment flux in the western 30 km of the island compared to the eastern 20 km. We conclude that the cross-shore flux of sediment can explain the shoreline change observations, and is an integral component of Fire Island's sediment budget.

  7. Improvements in Fabrication of 3D SU-8 Prisms for Low-Coupling-Loss Interconnections Between Fibers and Waveguides

    NASA Astrophysics Data System (ADS)

    Nguyen, Minh-Hang; Chu, Thi-Xuan; Nguyen, Long; Nguyen, Hai-Binh; Lee, Chun-Wei; Tseng, Fan-Gang; Chen, Te-Chang; Lee, Ming-Chang

    2016-11-01

    Fabrication of three-dimensional (3D) SU-8 (an epoxy-based negative photoresist from MicroChem) prisms as low-loss couplers for interconnection between optical components, particularly optical fibers and silicon-on-isolator waveguides (SOI WGs), which have mismatched mode sizes, has been investigated. With an interfacial structure formed by a 3D SU-8 prism partly overlaying an SOI WG end with a portion of buried oxide (BOX) removed under the interface, low-loss coupling is ensured and the transmission efficiency can reach 70%. To fabricate these 3D SU-8 prisms, a simple method with two photolithography steps was used for SU-8 hinges and CYTOP (an amorphous fluoropolymer from AGC Chemicals) prism windows, with mild soft and hard bakes, to define the prism profiles with diluted SU-8 filled in the CYTOP prism windows. A buffered oxide etchant is used to remove BOX parts under the interfaces. Some of the fabricated structures were tested, demonstrating the contribution of overlaying SU-8 prisms to the transmission efficiency of optical interconnections between fibers and SOI WGs.

  8. Assessing quality of urban underground spaces by coupling 3D geological models: The case study of Foshan city, South China

    NASA Astrophysics Data System (ADS)

    Hou, Weisheng; Yang, Liang; Deng, Dongcheng; Ye, Jing; Clarke, Keith; Yang, Zhijun; Zhuang, Wenming; Liu, Jianxiong; Huang, Jichun

    2016-04-01

    Urban underground spaces (UUS), especially those containing natural resources that have not yet been utilized, have been recognized as important for future sustainable development in large cities. One of the key steps in city planning is to estimate the quality of urban underground space resources, since they are major determinants of suitable land use. Yet geological constraints are rarely taken into consideration in urban planning, nor are the uncertainties in the quality of the available assessments. Based on Fuzzy Set theory and the analytic hierarchy process, a 3D stepwise process for the quality assessment of geotechnical properties of natural resources in UUS is presented. The process includes an index system for construction factors; area partitioning; the extraction of geological attributes; the creation of a relative membership grade matrix; the evaluation of subject and destination layers; and indeterminacy analysis. A 3D geological model of the study area was introduced into the process that extracted geological attributes as constraints. This 3D geological model was coupled with borehole data for Foshan City, Guangdong province, South China, and the indeterminacies caused by the cell size and the geological strata constraints were analyzed. The results of the case study show that (1) a relatively correct result can be obtained if the cell size is near to the average sampling distance of the boreholes; (2) the constraints of the 3D geological model have a major role in establishing the UUS quality level and distribution, especially at the boundaries of the geological bodies; and (3) the assessment result is impacted by an interaction between the cell resolution and the geological model used.

  9. An extended thermomechanically coupled 3D rate-dependent model for pseudoelastic SMAs under cyclic loading

    NASA Astrophysics Data System (ADS)

    Gu, Xiaojun; Zhang, Weihong; Zaki, Wael; Moumni, Ziad

    2017-09-01

    The model presented in this paper was shown to successfully account for cyclic loading effects and thermomechanical coupling in SMAs, including the influence of load rate and temperature on both the rate and value at saturation of the residual strain. It is the first such comprehensive model to be successfully utilized for relatively complex simulations involving SMAs subjected to multiaxial nonproportional loading, which possibly result in strong stress gradients such as fracture mechanics. In fact, it is known that the high stress concentration at the tip of a crack in SMAs results in increased martensite transformation and reorientation, which influence the growth of the crack. The derivation of the constitutive equations as well as the time integration and relevant algorithmic considerations are presented in detail. The model was shown to allow reasonable agreement with several sets of reference experimental and simulation data taken from the literature.

  10. TART97 a coupled neutron-photon 3-D, combinatorial geometry Monte Carlo transport code

    SciTech Connect

    Cullen, D.E.

    1997-11-22

    TART97 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo transport code. This code can on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART97 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART97 is distributed on CD. This CD contains on- line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART97 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART97 and its data riles.

  11. Budget of organic carbon in the North-Western Mediterranean open sea over the period 2004-2008 using 3-D coupled physical-biogeochemical modeling

    NASA Astrophysics Data System (ADS)

    Ulses, C.; Auger, P.-A.; Soetaert, K.; Marsaleix, P.; Diaz, F.; Coppola, L.; Herrmann, M. J.; Kessouri, F.; Estournel, C.

    2016-09-01

    A 3-D hydrodynamic-biogeochemical coupled model has been used to estimate a budget of organic carbon and its interannual variability over the 5 year period 2004-2008 in the North-Western Mediterranean Open Sea (NWMOS). The comparison of its results with in situ and satellite observations reveals that the timing and the magnitude of the convection and bloom processes during the study period, marked by contrasted atmospheric conditions, are reasonably well reproduced by the model. Model outputs show that the amount of nutrients annually injected into the surface layer is clearly linked to the intensity of the events of winter convection. During cold winters, primary production is reduced by intense mixing events but then spectacularly increases when the water column restratifies. In contrast, during mild winters, the primary production progressively and continuously increases, sustained by moderate new production followed by regenerated production. Overall, interannual variability in the annual primary production is low. The export in subsurface and at middepth is however affected by the intensity of the convection process, with annual values twice as high during cold winters than during mild winters. Finally, the estimation of a global budget of organic carbon reveals that the NWMOS acts as a sink for the shallower areas and as a source for the Algerian and Balearic subbasins.

  12. A 3-D coupled ice sheet - sea level model applied to Antarctica through the last 40,000 years

    NASA Astrophysics Data System (ADS)

    Pollard, D.; Gomez, N. A.; Mitrovica, J. X.

    2012-12-01

    A 3-D ice sheet-shelf model is coupled to a gravitationally self-consistent global sea-level model valid for a self-gravitating, viscoelastically deforming Earth, and applied to Antarctica through the last 40,000 years. The sea-level model simulates far-field and near-field departures in ocean depths from a simple eustatic (i.e., globally uniform) curve. The coupled model captures interactions due to the gravitational effect of varying ice mass on the proximal ocean and grounding-line depths, which is a negative feedback tending to slow down marine grounding-line retreat especially in West Antarctica. The parameterized ice-sheet forcing includes sub-ice-shelf oceanic melting based on the cavity-box model of Olbers and Hellmer (Ocean Dynamics, 2010), driven by circum-Antarctic ocean temperatures over the last 22,000 yr from the A-OGCM results of Liu et al. (Science, 2009). Northern Hemispheric ice variations required as input to the sea-level model are adopted from the ICE-5G ice sheet history (Peltier, Ann. Rev. Earth Plan. Sci., 2004). The coupled model output includes 3-D ice distributions and global maps of bedrock elevation and sea level, from 40,000 yr BP to the present. Presented results will focus on total ice volume through time, ice distributions and sea levels at the Last Glacial Maximum and present, grounding-line retreat patterns though the last deglaciation, and relative sea level curves at selected locations. Sensitivities to coupled vs. uncoupled versions, model resolution, and several other key parameters will be assessed.

  13. Application of ATHLET/DYN3D coupled codes system for fast liquid metal cooled reactor steady state simulation

    NASA Astrophysics Data System (ADS)

    Ivanov, V.; Samokhin, A.; Danicheva, I.; Khrennikov, N.; Bouscuet, J.; Velkov, K.; Pasichnyk, I.

    2017-01-01

    In this paper the approaches used for developing of the BN-800 reactor test model and for validation of coupled neutron-physic and thermohydraulic calculations are described. Coupled codes ATHLET 3.0 (code for thermohydraulic calculations of reactor transients) and DYN3D (3-dimensional code of neutron kinetics) are used for calculations. The main calculation results of reactor steady state condition are provided. 3-D model used for neutron calculations was developed for start reactor BN-800 load. The homogeneous approach is used for description of reactor assemblies. Along with main simplifications, the main reactor BN-800 core zones are described (LEZ, MEZ, HEZ, MOX, blankets). The 3D neutron physics calculations were provided with 28-group library, which is based on estimated nuclear data ENDF/B-7.0. Neutron SCALE code was used for preparation of group constants. Nodalization hydraulic model has boundary conditions by coolant mass-flow rate for core inlet part, by pressure and enthalpy for core outlet part, which can be chosen depending on reactor state. Core inlet and outlet temperatures were chosen according to reactor nominal state. The coolant mass flow rate profiling through the core is based on reactor power distribution. The test thermohydraulic calculations made with using of developed model showed acceptable results in coolant mass flow rate distribution through the reactor core and in axial temperature and pressure distribution. The developed model will be upgraded in future for different transient analysis in metal-cooled fast reactors of BN type including reactivity transients (control rods withdrawal, stop of the main circulation pump, etc.).

  14. 3D Numerical Simulations of Coupled Solid and Fluid Mechanics in Volcanic Conduit Erosion and Crater Formation

    NASA Astrophysics Data System (ADS)

    Wohletz, K. H.; Ogden, D. E.

    2008-12-01

    An essential element of explosive volcanic eruptions is the effect of the evolving conduit and vent on the erupting multiphase flow and the effect of the flow upon the conduit and vent rocks, a 3D geological nozzle problem. This coupling of the host rock solid mechanics with the fluid dynamics of an erupting multiphase fluid has never been directly simulated and is poorly understood. We apply a library of computer codes called CFDLib, which has been developed by the Theoretical Division at Los Alamos National Laboratory. This code provides the unique capability of being able to solve the interaction of an Eulerian fluid with a Lagrangian solid in 3D while treating multiphase turbulence that this interaction generates. Our previous work with CFDLib has been directed at validating results with laboratory experiments, verification against analytical models, and free-jet decompression. This work demonstrated the importance of vent overpressure in determining the characteristics of an erupted column of gas and tephra. However, eruption of an overpressured jet is strongly coupled to the dynamics of the vent shape that in turn is dependent upon conduit dynamics. For this reason most previous computer simulations of volcanic eruptions have assumed pressure-balanced conditions of flow from the vent. Here we demonstrate our progress in simulating vent evolution during eruption of an overpressured multiphase (steam and magma/rock) fluid. With increasing overpressure the evolved vent radius increases with the formation of a crater. The Mach Stem structure of the erupted jet resembles those of our previous simulations from a fixed vent, but the evolving vent nozzle and contributions of eroded material to the jet make its structure more complicated and variable with time. Future work will focus on study of the effects of host rock properties and 3D conduit shape.

  15. Dynamically coupled 3D pollutant dispersion model for assessing produced water discharges in the Canadian offshore area.

    PubMed

    Zhao, Lin; Chen, Zhi; Lee, Kenneth

    2013-02-05

    Produced water is the contaminated water that is brought to the surface in the process of recovering oil and gas. On the basis of discharge volume, this type of contaminated water is the largest contributor to the offshore waste stream. Modeling studies of large amounts of wastewater discharge into offshore areas have helped in the understanding of pollutant dispersion behaviors in marine environments and in further evaluating the potential environmental effects resulting from produced water discharges. This study presents an integrated three-dimensional (3D) approach for the simulation of produced water discharges in offshore areas. Specifically, an explicit second-order finite difference method was used to model the far-field pollutant dispersion behavior, and this method was coupled with the jet-plume model JETLAG with an extension of the 3D cross-flow conditions to simulate the near-field mixing processes. A dynamic coupling technique with full consideration of the interaction between the discharged fluids and receiving waters was employed in the model. A case study was conducted on the Grand Banks of Newfoundland, Canada. The field validation of the modeling results was conducted for both the near-field and far-field dispersion processes, and the modeling results were in good agreement with the field observations. This study provides an integrated system tool for the simulation of complex transport processes in offshore areas, and the results from such modeling systems can be further used for the risk assessment analysis of the surface water environment.

  16. 3-D Coupled FE Analysis and Experimental Validation of Restrained Welding to Control Angular Distortion

    NASA Astrophysics Data System (ADS)

    Damale, A. V.; Nandurkar, K. N.

    2012-10-01

    Welding induced distortion is one of the critical defects in the welded structures. Angular distortion is most pronounced which badly affects the welded structures. Non-uniform heating during welding develops this angular distortion. Various methods are available to control/minimize the welding distortions. One of the methods available to control this distortion is restraining, in which clamping pressure is applied on the deforming edges of the plates. In the present study, a 3-dimensional coupled transient thermal analysis is done for simulating the restraining phenomenon of welding. The developed transient thermal heat source was used to simulate the arc welding phenomenon. The element birth and death technique was used for simulating filler material deposition. Thermal model was verified by comparing the macrograph of Finite Element Analysis (FEA) model and the weld and verification of structural model was done by comparing the measured and predicted angular distortions. Experimental and Finite Element (FE) analysis is done for both conventional welding and welding under restraining pressure. Transient thermal and non-linear structural analyses were carried out in order to predict angular distortions. The Finite Element Method analysis and experimental verification is done for manual metal arc welding process.

  17. 3D MHD Simulations of Injector Coupling and Current Drive in HIT-SI

    NASA Astrophysics Data System (ADS)

    Hansen, Chris; Marklin, George; Jarboe, Thomas

    2013-10-01

    A new non-linear reduced MHD code has been developed using the PSI-TET framework, which is capable of modeling the full HIT-SI geometry with consistent boundary conditions for the insulator coated flux conserver. The PSI-TET framework provides general mechanics supporting the development of multi-physics simulation using high order finite methods with a tetrahedral spatial discretization. Using these capabilities an implementation of reduced Hall-MHD was developed where temperature and density are assumed to be uniform and constant, reducing the full MHD equations to the momentum and induction equations. A Nedelec vector basis set is used for the magnetic field, which preserves the divergence free property of the induction equation, and a scalar Lagrange basis is used for each component of the velocity. The equation system is advanced using a time centered implicit scheme, which is solved using a multi-grid preconditioned Newton-Krylov method. Results will be presented focusing on internal injector dynamics and coupling to the Spheromak region. Comparison between this code and experimental data as well as existing NIMROD simulations of HIT-SI, which model the injector operation with boundary conditions on an axisymmetric grid, will also be shown. Work supported by DOE.

  18. Quantifying Hyporheic Exchanges in a Large Scale River Reach Using Coupled 3-D Surface and Subsurface Computational Fluid Dynamics Simulations

    NASA Astrophysics Data System (ADS)

    Bao, J.; Zhou, T.; Huang, M.; Hou, Z.; Perkins, W. A.; Harding, S.; Hammond, G. E.; Ren, H.; Thorne, P. D.; Suffield, S. R.; Zachara, J. M.

    2016-12-01

    Hyporheic exchange between river water and groundwater is an important mechanism for biogeochemical processes, such as carbon and nitrogen cycling, and biodegradation of organic contaminants, in the subsurface interaction zone. The relationship between river flow conditions and hyporheic exchanges therefore is of great interests to hydrologists, biogeochemists, and ecologists. However, quantifying relative influences of hydrostatic and hydrodynamic drivers on hyporheic exchanges is very challenging in large rivers due to accessibility and spatial coverage of measurements, and computational tools available for numerical experiments. In this study, we aim to demonstrate that a high resolution computational fluid dynamics (CFD) model that couples surface and subsurface flow and transport can be used to simulate hyporheic exchanges and the residence time of river water in the hypothetic zone. Base on the assumption that the hyporheic exchange does not affect the surface water flow condition due to its small magnitude compared to the velocity of river water, we developed a one way coupled surface and subsurface water flow model in a commercial CFD software STAR-CCM+, that connects the Reynolds-averaged Navier-Stokes (RANS) equation solver with a realizable two-layer turbulence model, a two-layer all y+ wall treatment, and the volume of fluid (VOF) method for tracking the free water-air interface as well as porous media flow in the subsurface domain. The model is applied to a 7-km long section of the Columbia River and validated against measurements from the acoustic Doppler current profiler (ADCP) in the surface water and hyporheic fluxes derived from a set of temperature profilers installed across the riverbed. The validated model is then employed to systematically investigate how hyporheic exchanges influenced by 1) riverbed properties such as the permeability and thickness of the alluvial layer; 2) surface water hydrodynamics due to channel geomorphological settings

  19. Hydrodynamic chromatography coupled with single particle-inductively coupled plasma mass spectrometry for investigating nanoparticles agglomerates.

    PubMed

    Rakcheev, Denis; Philippe, Allan; Schaumann, Gabriele E

    2013-11-19

    Studying the environmental fate of engineered or natural colloids requires efficient methods for measuring their size and quantifying them in the environment. For example, an ideal method should maintain its correctness, accuracy, reproducibility, and robustness when applied to samples contained in complex matrixes and distinguish the target particles from the natural colloidal background signals. Since it is expected that a large portion of nanoparticles will form homo- or heteroagglomerates when released into environmental media, it is necessary to differentiate agglomerates from primary particles. At present, most sizing techniques do not fulfill these requirements. In this study, we used online coupling of two promising complementary sizing techniques: hydrodynamic chromatography (HDC) and single-particle ICPMS analysis to analyze gold nanoparticles agglomerated under controlled conditions. We used the single-particle mode of the ICPMS detector to detect single particles eluted from an HDC-column and determine a mass and an effective diameter for each particle using a double calibration approach. The average agglomerate relative density and fractal dimension were calculated using these data and used to follow the morphological evolution of agglomerates over time during the agglomeration process. The results demonstrate the ability of HDC coupled to single-particle analysis to identify and characterize nanoparticle homoagglomerates and is a very promising technique for the analysis of colloids in complex media.

  20. Accurate gradient approximation for complex interface problems in 3D by an improved coupling interface method

    SciTech Connect

    Shu, Yu-Chen; Chern, I-Liang; Chang, Chien C.

    2014-10-15

    Most elliptic interface solvers become complicated for complex interface problems at those “exceptional points” where there are not enough neighboring interior points for high order interpolation. Such complication increases especially in three dimensions. Usually, the solvers are thus reduced to low order accuracy. In this paper, we classify these exceptional points and propose two recipes to maintain order of accuracy there, aiming at improving the previous coupling interface method [26]. Yet the idea is also applicable to other interface solvers. The main idea is to have at least first order approximations for second order derivatives at those exceptional points. Recipe 1 is to use the finite difference approximation for the second order derivatives at a nearby interior grid point, whenever this is possible. Recipe 2 is to flip domain signatures and introduce a ghost state so that a second-order method can be applied. This ghost state is a smooth extension of the solution at the exceptional point from the other side of the interface. The original state is recovered by a post-processing using nearby states and jump conditions. The choice of recipes is determined by a classification scheme of the exceptional points. The method renders the solution and its gradient uniformly second-order accurate in the entire computed domain. Numerical examples are provided to illustrate the second order accuracy of the presently proposed method in approximating the gradients of the original states for some complex interfaces which we had tested previous in two and three dimensions, and a real molecule ( (1D63)) which is double-helix shape and composed of hundreds of atoms.

  1. Compact 3D lidar based on optically coupled horizontal and vertical scanning mechanism for the autonomous navigation of robots

    NASA Astrophysics Data System (ADS)

    Lee, Min-Gu; Baeg, Seung-Ho; Lee, Ki-Min; Lee, Hae-Seok; Baeg, Moon-Hong; Park, Jong-Ok; Kim, Hong-Ki

    2011-06-01

    The purpose of this research is to develop a new 3D LIDAR sensor, named KIDAR-B25, for measuring 3D image information with high range accuracy, high speed and compact size. To measure a distance to the target object, we developed a range measurement unit, which is implemented by the direct Time-Of-Flight (TOF) method using TDC chip, a pulsed laser transmitter as an illumination source (pulse width: 10 ns, wavelength: 905 nm, repetition rate: 30kHz, peak power: 20W), and an Si APD receiver, which has high sensitivity and wide bandwidth. Also, we devised a horizontal and vertical scanning mechanism, climbing in a spiral and coupled with the laser optical path. Besides, control electronics such as the motor controller, the signal processing unit, the power distributor and so on, are developed and integrated in a compact assembly. The key point of the 3D LIDAR design proposed in this paper is to use the compact scanning mechanism, which is coupled with optical module horizontally and vertically. This KIDAR-B25 has the same beam propagation axis for emitting pulse laser and receiving reflected one with no optical interference each other. The scanning performance of the KIDAR-B25 has proven with the stable operation up to 20Hz (vertical), 40Hz (horizontal) and the time is about 1.7s to reach the maximum speed. The range of vertical plane can be available up to +/-10 degree FOV (Field Of View) with a 0.25 degree angular resolution. The whole horizontal plane (360 degree) can be also available with 0.125 degree angular resolution. Since the KIDAR-B25 sensor has been planned and developed to be used in mobile robots for navigation, we conducted an outdoor test for evaluating its performance. The experimental results show that the captured 3D imaging data can be usefully applicable to the navigation of the robot for detecting and avoiding the moving objects with real time.

  2. A coupling simulation based on a hydrodynamics and water quality model of the Pearl River Delta, China

    NASA Astrophysics Data System (ADS)

    Zhou, Nianqing; Westrich, Bernhard; Jiang, Simin; Wang, Yan

    2011-01-01

    SummaryThe rapid economic development has caused heavy pollution in the Pearl River Delta Region (PRDR) and neighboring regions. In order to investigate the polluted characteristics, a coupled modelling approach has been deployed and the study area in the Pear River Delta is divided into two modelling systems: a river network that is simulated by a 1D hydrodynamic and water quality model, and an estuary that is modelled by a 3D model. The 1D river network model is coupled with the 3D estuary model based on the mass conservation criteria. The hydrodynamic (HD) model is based on 1D hydrostatic shallow water equations, and is solved by the Alternating Direction Implicit Approach. The water quality (WQ) model component is based on advection-diffusion equations. Some physical and bio-chemical processes are included in the WQ model to address the water pollution problems by different pollution substances, in particular, to the chemical oxygen demand (COD). The water quality data of the main rivers from 2004 to 2007 were collected, processed and evaluated. Because no detailed water quality data in the river is available, the COD source pollution intensity in the water quality model is taking the pollutant load from the confluence of the main five outlets of the Pearl River Estuary (PRE) for 1996-2007 as surrogate. The results show that the pollutants from the PRDR have a large impact on the quality of the Hong Kong seawater and much more serious in the wet season with high river discharge. An insight of the flow and transportation mechanism in the river and estuary system has been obtained through the paper, and a reliable basis to control water pollution of the Pearl River Delta is provided in this paper.

  3. Alzheimer's disease detection via automatic 3D caudate nucleus segmentation using coupled dictionary learning with level set formulation.

    PubMed

    Al-Shaikhli, Saif Dawood Salman; Yang, Michael Ying; Rosenhahn, Bodo

    2016-12-01

    This paper presents a novel method for Alzheimer's disease classification via an automatic 3D caudate nucleus segmentation. The proposed method consists of segmentation and classification steps. In the segmentation step, we propose a novel level set cost function. The proposed cost function is constrained by a sparse representation of local image features using a dictionary learning method. We present coupled dictionaries: a feature dictionary of a grayscale brain image and a label dictionary of a caudate nucleus label image. Using online dictionary learning, the coupled dictionaries are learned from the training data. The learned coupled dictionaries are embedded into a level set function. In the classification step, a region-based feature dictionary is built. The region-based feature dictionary is learned from shape features of the caudate nucleus in the training data. The classification is based on the measure of the similarity between the sparse representation of region-based shape features of the segmented caudate in the test image and the region-based feature dictionary. The experimental results demonstrate the superiority of our method over the state-of-the-art methods by achieving a high segmentation (91.5%) and classification (92.5%) accuracy. In this paper, we find that the study of the caudate nucleus atrophy gives an advantage over the study of whole brain structure atrophy to detect Alzheimer's disease. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  4. Parallelized Modelling of Soil-Coupled 3D Water Uptake of Multiple Root Systems with Automatic Adaptive Time Step Control

    NASA Astrophysics Data System (ADS)

    Kalbacher, T.; Delfs, J.; Schneider, C.; Kolditz, O.; Ufz-Environmental Informatics

    2010-12-01

    Numerical modelling of interacting flow processes between roots and soil is essential for understanding the influence of different root geometries and types on the hydro-system. This technical contribution will describe the coupling of two software tools to enable the analysis of water uptake of plant communities, one modelling the water flow along a network of resistances from the bulk soil along radial soil discs towards the root system up to the root collar while the second tool is covering the non-linear dynamics of water flow within soil by a 3D-Richards model. Appropriate methods for geometric coupling, fast coupled parameter exchange and coordinated parallelization have been developed to ensure an efficient functionality. An adaptive time stepping with automatic control is introduced to guarantee the stability of the solution of non-linear problems. The development of benchmarking examples for roots-soil models with multiple root systems will be continuously and detailed reported on a new communication platform “HydroBench” for hydrological modeling.

  5. Numerical Simulation of 3D Thermo-Elastic Fatigue Crack Growth Problems Using Coupled FE-EFG Approach

    NASA Astrophysics Data System (ADS)

    Pathak, Himanshu; Singh, Akhilendra; Singh, Indra Vir

    2017-06-01

    In this work, finite element method (FEM) and element free Galerkin method (EFGM) are coupled for solving 3D crack domains subjected to cyclic thermal load of constant amplitude. Crack growth contours and fatigue life have been obtained for each of the considered numerical examples. Thermo-elastic problems are decoupled into thermal and elastic problems . Firstly, the unknown temperature field is obtained by solving heat conduction equation, then, it is used as the input load in the elastic problem to calculate the displacement and stress fields. The geometrical discontinuity across crack surface is modelled by extrinsically enriched EFGM and the remaining part of the domain is approximated by standard finite element method. At the crack interface, a ramp function based interpolation scheme has been implemented. This coupled approach combines the advantages of both EFGM and FEM. A linear successive crack increment approach is used to model crack growth. The growing crack surface is traced by level set function. Standard Paris law is used for life estimation of the three-dimensional crack models. Different cases of planar and non-planar crack problems have been solved and their results are compared with the results obtained using extended finite element method to check accuracy, efficiency and robustness of the coupled FE-EFG approach implemented in this study.

  6. Reproducible preparation of nanospray tips for capillary electrophoresis coupled to mass spectrometry using 3D printed grinding device.

    PubMed

    Tycova, Anna; Prikryl, Jan; Foret, Frantisek

    2016-04-01

    The use of high quality fused silica capillary nanospray tips is critical for obtaining reliable and reproducible electrospray/MS data; however, reproducible laboratory preparation of such tips is a challenging task. In this work, we report on the design and construction of low-cost grinding device assembled from 3D printed and commercially easily available components. Detailed description and characterization of the grinding device is complemented by freely accessible files in stl and skp format allowing easy laboratory replication of the device. The process of sharpening is aimed at achieving maximal symmetricity, surface smoothness and repeatability of the conus shape. Moreover, the presented grinding device brings possibility to fabricate the nanospray tips of desired dimensions regardless of the commercial availability. On several samples of biological nature (reserpine, rabbit plasma, and the mixture of three aminoacids), performance of fabricated tips is shown on CE coupled to MS analysis. The special interest is paid to the effect of tip sharpness.

  7. Development of Fully Coupled Aeroelastic and Hydrodynamic Models for Offshore Wind Turbines: Preprint

    SciTech Connect

    Jonkman, J. M.; Sclavounos, P. D.

    2006-01-01

    Aeroelastic simulation tools are routinely used to design and analyze onshore wind turbines, in order to obtain cost effective machines that achieve favorable performance while maintaining structural integrity. These tools employ sophisticated models of wind-inflow; aerodynamic, gravitational, and inertial loading of the rotor, nacelle, and tower; elastic effects within and between components; and mechanical actuation and electrical responses of the generator and of control and protection systems. For offshore wind turbines, additional models of the hydrodynamic loading in regular and irregular seas, the dynamic coupling between the support platform motions and wind turbine motions, and the dynamic characterization of mooring systems for compliant floating platforms are also important. Hydrodynamic loading includes contributions from hydrostatics, wave radiation, and wave scattering, including free surface memory effects. The integration of all of these models into comprehensive simulation tools, capable of modeling the fully coupled aeroelastic and hydrodynamic responses of floating offshore wind turbines, is presented.

  8. Precision 3d Surface Reconstruction from Lro Nac Images Using Semi-Global Matching with Coupled Epipolar Rectification

    NASA Astrophysics Data System (ADS)

    Hu, H.; Wu, B.

    2017-07-01

    The Narrow-Angle Camera (NAC) on board the Lunar Reconnaissance Orbiter (LRO) comprises of a pair of closely attached high-resolution push-broom sensors, in order to improve the swath coverage. However, the two image sensors do not share the same lenses and cannot be modelled geometrically using a single physical model. Thus, previous works on dense matching of stereo pairs of NAC images would generally create two to four stereo models, each with an irregular and overlapping region of varying size. Semi-Global Matching (SGM) is a well-known dense matching method and has been widely used for image-based 3D surface reconstruction. SGM is a global matching algorithm relying on global inference in a larger context rather than individual pixels to establish stable correspondences. The stereo configuration of LRO NAC images causes severe problem for image matching methods such as SGM, which emphasizes global matching strategy. Aiming at using SGM for image matching of LRO NAC stereo pairs for precision 3D surface reconstruction, this paper presents a coupled epipolar rectification methods for LRO NAC stereo images, which merges the image pair in the disparity space and in this way, only one stereo model will be estimated. For a stereo pair (four) of NAC images, the method starts with the boresight calibration by finding correspondence in the small overlapping stripe between each pair of NAC images and bundle adjustment of the stereo pair, in order to clean the vertical disparities. Then, the dominate direction of the images are estimated by project the center of the coverage area to the reference image and back-projected to the bounding box plane determined by the image orientation parameters iteratively. The dominate direction will determine an affine model, by which the pair of NAC images are warped onto the object space with a given ground resolution and in the meantime, a mask is produced indicating the owner of each pixel. SGM is then used to generate a disparity

  9. Coastal erosion vulnerability estimations by coupling field data and hydrodynamic modeling

    NASA Astrophysics Data System (ADS)

    Finikianaki, Vasilia; Alexandrakis, George; Poulos, Serafim; Ghionis, George; Kampanis, Nikolaos

    2017-04-01

    Wind generated waves are a dominant factor of coastal zone evolution as they induce nearshore sediment movement. Significant sediment transport and the associated morphological changes of the coastal zone are related, mainly, to storm events. In this study, the effects of a severe storm event, associated with the Etesian winds, that took place from the 24th to 30th of July at Gouves beach (north coast of Crete) were monitored ([1], [2]) and subsequently simulated, with the use of the Delft3D model, in order to provide necessary data for estimating beach vulnerability. Beach vulnerability to erosion was estimated by the BVI method ([3]), which has the ability to refer to smaller sectors of an individual beach. The interaction between waves and currents, which is required for the computation of the BVI, was obtained by the coupling of two models included in Delft3D: the Delft3D - FLOW, for the hydrodynamic computations and the sediment transport processes; and the Delft3D - WAVE, for the computation of the wave field. Boundary conditions were derived from the field data, assuming a JONSWAP spectrum. Additionally, 3 observation points were used for the monitoring of the computed quantities as a function of time. Their positions coincide with those of the three Valeport Autonomous Benthic Recorders, which were deployed at water depths of 2.60m, 3.95m and 5.62m during the field measurements. The outputs of the simulation fit well with the measured data, leading to accurate forecasted results regarding the morphodynamic conditions of the study area. Bottom changes occur mainly during the first peak of the event. The model slightly overestimates the significant wave height, the current velocity in the nearshore area and the suspended sediment concentration near the bed at the observation points. Furthermore, the model predicts a shoreward increase of sediment concentration at the observation points, with the value of accumulation at the second observation point being

  10. Regional-scale geomechanical impact assessment of underground coal gasification by coupled 3D thermo-mechanical modeling

    NASA Astrophysics Data System (ADS)

    Otto, Christopher; Kempka, Thomas; Kapusta, Krzysztof; Stańczyk, Krzysztof

    2016-04-01

    Underground coal gasification (UCG) has the potential to increase the world-wide coal reserves by utilization of coal deposits not mineable by conventional methods. The UCG process involves combusting coal in situ to produce a high-calorific synthesis gas, which can be applied for electricity generation or chemical feedstock production. Apart from its high economic potentials, UCG may induce site-specific environmental impacts such as fault reactivation, induced seismicity and ground subsidence, potentially inducing groundwater pollution. Changes overburden hydraulic conductivity resulting from thermo-mechanical effects may introduce migration pathways for UCG contaminants. Due to the financial efforts associated with UCG field trials, numerical modeling has been an important methodology to study coupled processes considering UCG performance. Almost all previous UCG studies applied 1D or 2D models for that purpose, that do not allow to predict the performance of a commercial-scale UCG operation. Considering our previous findings, demonstrating that far-field models can be run at a higher computational efficiency by using temperature-independent thermo-mechanical parameters, representative coupled simulations based on complex 3D regional-scale models were employed in the present study. For that purpose, a coupled thermo-mechanical 3D model has been developed to investigate the environmental impacts of UCG based on a regional-scale of the Polish Wieczorek mine located in the Upper Silesian Coal Basin. The model size is 10 km × 10 km × 5 km with ten dipping lithological layers, a double fault and 25 UCG reactors. Six different numerical simulation scenarios were investigated, considering the transpressive stress regime present in that part of the Upper Silesian Coal Basin. Our simulation results demonstrate that the minimum distance between the UCG reactors is about the six-fold of the coal seam thickness to avoid hydraulic communication between the single UCG

  11. Coupling ANIMO and MT3DMS for 3D regional-scale modeling of nutrient transport in soil and groundwater

    NASA Astrophysics Data System (ADS)

    Janssen, G.; Del Val Alonso, L.; Groenendijk, P.; Griffioen, J.

    2012-12-01

    We developed an on-line coupling between the 1D/quasi-2D nutrient transport model ANIMO and the 3D groundwater transport model code MT3DMS. ANIMO is a detailed, process-oriented model code for the simulation of nitrate leaching to groundwater, N- and P-loads on surface waters and emissions of greenhouse gasses. It is the leading nutrient fate and transport code in the Netherlands where it is used primarily for the evaluation of fertilization related legislation. In addition, the code is applied frequently in international research projects. MT3DMS is probably the most commonly used groundwater solute transport package worldwide. The on-line model coupling ANIMO-MT3DMS combines the state-of-the-art descriptions of the biogeochemical cycles in ANIMO with the advantages of using a 3D approach for the transport through the saturated domain. These advantages include accounting for regional lateral transport, considering groundwater-surface water interactions more explicitly, and the possibility of using MODFLOW to obtain the flow fields. An additional merit of the on-line coupling concept is that it preserves feedbacks between the saturated and unsaturated zone. We tested ANIMO-MT3DMS by simulating nutrient transport for the period 1970-2007 in a Dutch agricultural polder catchment covering an area of 118 km2. The transient groundwater flow field had a temporal resolution of one day and was calculated with MODFLOW-MetaSWAP. The horizontal resolution of the model grid was 100x100m and consisted of 25 layers of varying thickness. To keep computation times manageable, we prepared MT3DMS for parallel computing, which in itself is a relevant development for a large community of groundwater transport modelers. For the parameterization of the soil, we applied a standard classification approach, representing the area by 60 units with unique combinations of soil type, land use and geohydrological setting. For the geochemical parameterization of the deeper subsurface, however, we

  12. SABAE-HW3D: a Meteor-Hydrological Model Coupling the Land Surface to Groundwater Flow

    NASA Astrophysics Data System (ADS)

    Loukili, Y.; Woodbury, A. D.

    2007-12-01

    A new coupled model linking the land surface scheme SABAE-HW with the saturated groundwater flow is introduced. SABAE-HW stands for: Soil Atmosphere Boundary, Accurate Evaluations of Heat and Water. It was presented (Loukili et al., 2007) as a parallel extension to the Canadian LAnd Surface Scheme (CLASS) which permits a free choice of soil column depth and layers. This development is important as it allows for the coupling of the atmosphere, land surface and subsurface zones. The generic domain under study is subdivided into soil columns whose surface areas represent GCM grid squares. The depths of columns extend to the saturated zone where a water table lower boundary condition is prescribed. In each column the unsaturated flow is forced by the corresponding meteorological data, and the moisture (liquid and frozen) and temperature profiles are computed by SABAE-HW using the half hour time step. The horizontal flow in the saturated zone is described by the vertically integrated model incorporating a storage term, and discretized using a finite volume scheme operating on the same GCM quadrilateral mesh. Since the saturated flow model affords larger time steps, bottom drainages from soil columns are summed up and input as cell recharges. Meanwhile, as the water table fluctuates, the individual column's mesh is allowed to deform. This physically based coupling strategy was selected for its superiority in providing stable and consistent results. In fact, the convergence to steady state situations in both the unsaturated and saturated zones is realized in many validation numerical tests. Moreover, our SABAE-HW3D code was successfully benchmarked against the finite element code Seep/W (Geo-Slope International, 2002) for steady and transient groundwater flows through different soil types. Even when handling coarse grids, SABAE-HW3D solutions are free of moisture oscillation and under or overshoot near the water table. The model is used to understand and assess properly

  13. An in-depth spectroscopic examination of molecular bands from 3D hydrodynamical model atmospheres. I. Formation of the G-band in metal-poor dwarf stars

    NASA Astrophysics Data System (ADS)

    Gallagher, A. J.; Caffau, E.; Bonifacio, P.; Ludwig, H.-G.; Steffen, M.; Spite, M.

    2016-09-01

    Context. Recent developments in the three-dimensional (3D) spectral synthesis code Linfor3D have meant that for the first time, large spectral wavelength regions, such as molecular bands, can be synthesised with it in a short amount of time. Aims: A detailed spectral analysis of the synthetic G-band for several dwarf turn-off-type 3D atmospheres (5850 ≲ Teff [ K ] ≲ 6550, 4.0 ≤ log g ≤ 4.5, - 3.0 ≤ [Fe/H] ≤-1.0) was conducted, under the assumption of local thermodynamic equilibrium. We also examine carbon and oxygen molecule formation at various metallicity regimes and discuss the impact it has on the G-band. Methods: Using a qualitative approach, we describe the different behaviours between the 3D atmospheres and the traditional one-dimensional (1D) atmospheres and how the different physics involved inevitably leads to abundance corrections, which differ over varying metallicities. Spectra computed in 1D were fit to every 3D spectrum to determine the 3D abundance correction. Results: Early analysis revealed that the CH molecules that make up the G-band exhibited an oxygen abundance dependency; a higher oxygen abundance leads to weaker CH features. Nitrogen abundances showed zero impact to CH formation. The 3D corrections are also stronger at lower metallicity. Analysis of the 3D corrections to the G-band allows us to assign estimations of the 3D abundance correction to most dwarf stars presented in the literature. Conclusions: The 3D corrections suggest that A(C) in carbon-enhanced metal-poor (CEMP) stars with high A(C) would remain unchanged, but would decrease in CEMP stars with lower A(C). It was found that the C/O ratio is an important parameter to the G-band in 3D. Additional testing confirmed that the C/O ratio is an equally important parameter for OH transitions under 3D. This presents a clear interrelation between the carbon and oxygen abundances in 3D atmospheres through their molecular species, which is not seen in 1D.

  14. Handy Compton camera using 3D position-sensitive scintillators coupled with large-area monolithic MPPC arrays

    NASA Astrophysics Data System (ADS)

    Kataoka, J.; Kishimoto, A.; Nishiyama, T.; Fujita, T.; Takeuchi, K.; Kato, T.; Nakamori, T.; Ohsuka, S.; Nakamura, S.; Hirayanagi, M.; Adachi, S.; Uchiyama, T.; Yamamoto, K.

    2013-12-01

    The release of radioactive isotopes (mainly 137Cs, 134Cs and 131I) from the crippled Fukushima Daiichi Nuclear Plant remains a serious problem in Japan. To help identify radiation hotspots and ensure effective decontamination operation, we are developing a novel Compton camera weighting only 1 kg and measuring just ∼10 cm2 in size. Despite its compactness, the camera realizes a wide 180° field of vision with a sensitivity about 50 times superior to other cameras being tested in Fukushima. We expect that a hotspot producing a 5 μSv/h dose at a distance of 3 m can be imaged every 10 s, with angular resolution better than 10° (FWHM). The 3D position-sensitive scintillators and thin monolithic MPPC arrays are the key technologies developed here. By measuring the pulse-height ratio of MPPC-arrays coupled at both ends of a Ce:GAGG scintillator block, the depth of interaction (DOI) is obtained for incident gamma rays as well as the usual 2D positions, with accuracy better than 2 mm. By using two identical 10 mm cubic Ce:GAGG scintillators as a scatterer and an absorber, we confirmed that the 3D configuration works well as a high-resolution gamma camera, and also works as spectrometer achieving typical energy resolution of 9.8% (FWHM) for 662 keV gamma rays. We present the current status of the prototype camera (weighting 1.5 kg and measuring 8.5×14×16 cm3 in size) being fabricated by Hamamatsu Photonics K.K. Although the camera still operates in non-DOI mode, angular resolution as high as 14° (FWHM) was achieved with an integration time of 30 s for the assumed hotspot described above.

  15. Development of a 3D Soil-Plant-Atmosphere Continuum (SPAC) coupled to a Land Surface Model

    NASA Astrophysics Data System (ADS)

    Bisht, G.; Riley, W. J.; Lorenzetti, D.; Tang, J.

    2015-12-01

    Exchange of water between the atmosphere and biosphere via evapotranspiration (ET) influences global hydrological, energy, and biogeochemical cycles. Isotopic analysis has shown that evapotranspiration over the continents is largely dominated by transpiration. Water is taken up from soil by plant roots, transported through the plant's vascular system, and evaporated from the leaves. Yet current Land Surface Models (LSMs) integrated into Earth System Models (ESMs) treat plant roots as passive components. These models distribute the ET sink vertically over the soil column, neglect the vertical pressure distribution along the plant vascular system, and assume that leaves can directly access water from any soil layer within the root zone. Numerous studies have suggested that increased warming due to climate change will lead drought and heat-induced tree mortality. A more mechanistic treatment of water dynamics in the soil-plant-atmosphere continuum (SPAC) is essential for investigating the fate of ecosystems under a warmer climate. In this work, we describe a 3D SPAC model that can be coupled to a LSM. The SPAC model uses the variably saturated Richards equations to simulate water transport. The model uses individual governing equations and constitutive relationships for the various SPAC components (i.e., soil, root, and xylem). Finite volume spatial discretization and backward Euler temporal discretization is used to solve the SPAC model. The Portable, Extensible Toolkit for Scientific Computation (PETSc) is used to numerically integrate the discretized system of equations. Furthermore, PETSc's multi-physics coupling capability (DMComposite) is used to solve the tightly coupled system of equations of the SPAC model. Numerical results are presented for multiple test problems.

  16. Development of a 3D coupled physical-biogeochemical model for the Marseille coastal area (NW Mediterranean Sea): what complexity is required in the coastal zone?

    PubMed

    Fraysse, Marion; Pinazo, Christel; Faure, Vincent Martin; Fuchs, Rosalie; Lazzari, Paolo; Raimbault, Patrick; Pairaud, Ivane

    2013-01-01

    Terrestrial inputs (natural and anthropogenic) from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C) and nitrogen (N) cycles and a second model that also considers the phosphorus (P) cycle. Realistic simulations were performed for a period of 5 years (2007-2011). The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model.

  17. Development of a 3D Coupled Physical-Biogeochemical Model for the Marseille Coastal Area (NW Mediterranean Sea): What Complexity Is Required in the Coastal Zone?

    PubMed Central

    Fraysse, Marion; Pinazo, Christel; Faure, Vincent Martin; Fuchs, Rosalie; Lazzari, Paolo; Raimbault, Patrick; Pairaud, Ivane

    2013-01-01

    Terrestrial inputs (natural and anthropogenic) from rivers, the atmosphere and physical processes strongly impact the functioning of coastal pelagic ecosystems. The objective of this study was to develop a tool for the examination of these impacts on the Marseille coastal area, which experiences inputs from the Rhone River and high rates of atmospheric deposition. Therefore, a new 3D coupled physical/biogeochemical model was developed. Two versions of the biogeochemical model were tested, one model considering only the carbon (C) and nitrogen (N) cycles and a second model that also considers the phosphorus (P) cycle. Realistic simulations were performed for a period of 5 years (2007–2011). The model accuracy assessment showed that both versions of the model were able of capturing the seasonal changes and spatial characteristics of the ecosystem. The model also reproduced upwelling events and the intrusion of Rhone River water into the Bay of Marseille well. Those processes appeared to greatly impact this coastal oligotrophic area because they induced strong increases in chlorophyll-a concentrations in the surface layer. The model with the C, N and P cycles better reproduced the chlorophyll-a concentrations at the surface than did the model without the P cycle, especially for the Rhone River water. Nevertheless, the chlorophyll-a concentrations at depth were better represented by the model without the P cycle. Therefore, the complexity of the biogeochemical model introduced errors into the model results, but it also improved model results during specific events. Finally, this study suggested that in coastal oligotrophic areas, improvements in the description and quantification of the hydrodynamics and the terrestrial inputs should be preferred over increasing the complexity of the biogeochemical model. PMID:24324589

  18. Low-frequency variability in North Sea and Baltic Sea identified through simulations with the 3-D coupled physical-biogeochemical model ECOSMO

    NASA Astrophysics Data System (ADS)

    Daewel, Ute; Schrum, Corinna

    2017-09-01

    Here we present results from a long-term model simulation of the 3-D coupled ecosystem model ECOSMO II for a North Sea and Baltic Sea set-up. The model allows both multi-decadal hindcast simulation of the marine system and specific process studies under controlled environmental conditions. Model results have been analysed with respect to long-term multi-decadal variability in both physical and biological parameters with the help of empirical orthogonal function (EOF) analysis. The analysis of a 61-year (1948-2008) hindcast reveals a quasi-decadal variation in salinity, temperature and current fields in the North Sea in addition to singular events of major changes during restricted time frames. These changes in hydrodynamic variables were found to be associated with changes in ecosystem productivity that are temporally aligned with the timing of reported regime shifts in the areas. Our results clearly indicate that for analysing ecosystem productivity, spatially explicit methods are indispensable. Especially in the North Sea, a correlation analysis between atmospheric forcing and primary production (PP) reveals significant correlations between PP and the North Atlantic Oscillation (NAO) and wind forcing for the central part of the region, while the Atlantic Multi-decadal Oscillation (AMO) and air temperature are correlated to long-term changes in PP in the southern North Sea frontal areas. Since correlations cannot serve to identify causal relationship, we performed scenario model runs perturbing the temporal variability in forcing condition to emphasize specifically the role of solar radiation, wind and eutrophication. The results revealed that, although all parameters are relevant for the magnitude of PP in the North Sea and Baltic Sea, the dominant impact on long-term variability and major shifts in ecosystem productivity was introduced by modulations of the wind fields.

  19. Rotating colloids in rotating magnetic fields: Dipolar relaxation and hydrodynamic coupling

    NASA Astrophysics Data System (ADS)

    Coughlan, Anna C. H.; Bevan, Michael A.

    2016-10-01

    Video microscopy (VM) experiments and Brownian dynamics (BD) simulations were used to measure and model superparamagnetic colloidal particles in rotating magnetic fields for interaction energies on the order of the thermal energy, kT . Results from experiments and simulations were compared for isolated particle rotation, particle rotation within doublets, doublet rotation, and separation within doublets vs field rotation frequency. Agreement between VM and BD results was obtained at all frequencies and amplitudes only by including exact two-body hydrodynamic interactions and relevant relaxation times of magnetic dipoles. Frequency-dependent particle forces and torques cause doublets to rotate at low frequencies via dipolar interactions and at high frequencies via hydrodynamic translation-rotation coupling. By matching measurements and simulations for a range of conditions, our findings unambiguously demonstrate the quantitative forms of dipolar and hydrodynamic interactions necessary to capture nonequilibrium, steady-state dynamics of Brownian colloids in magnetic fields.

  20. Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation.

    PubMed

    Clatz, Olivier; Sermesant, Maxime; Bondiau, Pierre-Yves; Delingette, Hervé; Warfield, Simon K; Malandain, Grégoire; Ayache, Nicholas

    2005-10-01

    We propose a new model to simulate the three-dimensional (3-D) growth of glioblastomas multiforma (GBMs), the most aggressive glial tumors. The GBM speed of growth depends on the invaded tissue: faster in white than in gray matter, it is stopped by the dura or the ventricles. These different structures are introduced into the model using an atlas matching technique. The atlas includes both the segmentations of anatomical structures and diffusion information in white matter fibers. We use the finite element method (FEM) to simulate the invasion of the GBM in the brain parenchyma and its mechanical interaction with the invaded structures (mass effect). Depending on the considered tissue, the former effect is modeled with a reaction-diffusion or a Gompertz equation, while the latter is based on a linear elastic brain constitutive equation. In addition, we propose a new coupling equation taking into account the mechanical influence of the tumor cells on the invaded tissues. The tumor growth simulation is assessed by comparing the in-silico GBM growth with the real growth observed on two magnetic resonance images (MRIs) of a patient acquired with 6 mo difference. Results show the feasibility of this new conceptual approach and justifies its further evaluation.

  1. A novel 3D-layered electrochemical-thermal coupled model strategy for the nail-penetration process simulation

    NASA Astrophysics Data System (ADS)

    Liang, Guozhou; Zhang, Yiming; Han, Qi; Liu, Zhaoping; Jiang, Zhen; Tian, Shuang

    2017-02-01

    The safety is one of the persisting concerns related with Lithium-ion (Li-ion) batteries, among which the internal short-circuit is the most dangerous abusive situation and has always been the root cause for several catastrophic accidents in recent years. In this work, a 3D-layered electrochemical-thermal coupled model is employed to investigate the nail-penetration process in a Li-ion cell. The model is based on multilayer construction of a cell, and an effective strategy to evaluate the short-circuit area equivalent resistance (i.e. the equivalent resistance of short-circuit area that is caused by nail-penetration) during the penetration process is proposed. The developed model is proved to have capability of estimating the thermal runaway time, as well as the temperature distribution during nail-penetration process. It is also found that the active material loss during the nail-penetration process can be reconstructed by utilizing the developed model, which could provide understandings about the side reactions inside the cell during the nail-penetration process. The present study provides some insights about the nail-penetration process, and can be treated as a useful tool that helps the design of Li-ion cells for improving safety.

  2. Mode-coupling and 3D effects in Indirect-Drive Rayleigh-Taylor experiments on OMEGA

    NASA Astrophysics Data System (ADS)

    Casner, Alexis; Huser, G.; Jadaud, J.-P.; Liberatore, S.; Galmiche, D.; Vandenboomgaerde, M.

    2006-10-01

    Indirect-Drive Rayleigh-Taylor experiments have been performed on the OMEGA laser facility since 2002 with rugby-ball shaped hohlraums [1]. A set of consistent data has been acquired for different single mode wavelengths (λ = 35, 50 and 70 μm) machined on brominated and germanium-doped samples. Hohlraum energetics was characterized by Dante measurements through the LEH while complementary shock breakout measurements or side-on radiography allow us to assess the x-ray flux incident on the wall-mounted sample. We recently address the problem of mode-coupling by comparing the growth of 2-mode patterns (λ = 35 and 70 μm), either in phase or in opposite phase. Depending on phase one or the other wavelength becomes predominant. Comparison between the FCI2 code calculations and the experimental data will be shown. We will also compare the experimental growth of 3D pattern (70 μm * 70 μm) with the equivalent 2D (λ =50 μm) one. [1] A. Casner et al., Proceedings of the 4^thIFSA Conference, Biarritz (2005).

  3. Kohn-Sham Band Structure Benchmark Including Spin-Orbit Coupling for 2D and 3D Solids

    NASA Astrophysics Data System (ADS)

    Huhn, William; Blum, Volker

    2015-03-01

    Accurate electronic band structures serve as a primary indicator of the suitability of a material for a given application, e.g., as electronic or catalytic materials. Computed band structures, however, are subject to a host of approximations, some of which are more obvious (e.g., the treatment of the exchange-correlation of self-energy) and others less obvious (e.g., the treatment of core, semicore, or valence electrons, handling of relativistic effects, or the accuracy of the underlying basis set used). We here provide a set of accurate Kohn-Sham band structure benchmarks, using the numeric atom-centered all-electron electronic structure code FHI-aims combined with the ``traditional'' PBE functional and the hybrid HSE functional, to calculate core, valence, and low-lying conduction bands of a set of 2D and 3D materials. Benchmarks are provided with and without effects of spin-orbit coupling, using quasi-degenerate perturbation theory to predict spin-orbit splittings. This work is funded by Fritz-Haber-Institut der Max-Planck-Gesellschaft.

  4. From the Tachocline Into the Heliosphere: Coupling a 3D kinematic dynamo to a Non-Linear Coronal Evolution Model

    NASA Astrophysics Data System (ADS)

    Munoz-Jaramillo, A.; Yeates, A. R.

    2013-12-01

    During the last decade, axisymmetric kinematic dynamo models have contributed greatly to our understanding of the solar cycle. However, with the advent of more powerful computers the limitation to axisymmetry has been lifted. Here we present a 3D kinematic dynamo model where active regions are driven by velocity perturbations calibrated to reproduce observed active region properties (including the size and flux of active regions, and the distribution of tilt angle with latitude), resulting in a more consistent treatment of flux-tube emergence in kinematic dynamo models than artificial flux deposition. We demonstrate how this technique can be used to assimilate active region observations obtained from the US National Solar Observatory/Kitt Peak (NSO/KP) synoptic magnetograms and how our model couples naturally with three-dimensional simulations of the Sun's coronal magnetic field paving the way for the simultaneous study of the evolution of the magnetic field in the solar interior as well as its impact on the heliosphere. This research is supported by the NASA Living With a Star Jack Eddy Postdoctoral Fellowship Program, administered by the UCAR Visiting Scientist Programs.

  5. The effect of coupling hydrologic and hydrodynamic models on probable maximum flood estimation

    NASA Astrophysics Data System (ADS)

    Felder, Guido; Zischg, Andreas; Weingartner, Rolf

    2017-07-01

    Deterministic rainfall-runoff modelling usually assumes stationary hydrological system, as model parameters are calibrated with and therefore dependant on observed data. However, runoff processes are probably not stationary in the case of a probable maximum flood (PMF) where discharge greatly exceeds observed flood peaks. Developing hydrodynamic models and using them to build coupled hydrologic-hydrodynamic models can potentially improve the plausibility of PMF estimations. This study aims to assess the potential benefits and constraints of coupled modelling compared to standard deterministic hydrologic modelling when it comes to PMF estimation. The two modelling approaches are applied using a set of 100 spatio-temporal probable maximum precipitation (PMP) distribution scenarios. The resulting hydrographs, the resulting peak discharges as well as the reliability and the plausibility of the estimates are evaluated. The discussion of the results shows that coupling hydrologic and hydrodynamic models substantially improves the physical plausibility of PMF modelling, although both modelling approaches lead to PMF estimations for the catchment outlet that fall within a similar range. Using a coupled model is particularly suggested in cases where considerable flood-prone areas are situated within a catchment.

  6. A 3D MOF constructed from dysprosium(III) oxalate and capping ligands: ferromagnetic coupling and field-induced two-step magnetic relaxation.

    PubMed

    Liu, Cai-Ming; Zhang, De-Qing; Zhu, Dao-Ben

    2016-04-04

    A novel 3D MOF based on dysprosium(iii) oxalate and 1,10-phenanthroline (phen), {[Dy(C2O4)1.5phen]·0.5H2O}n (1), has been hydrothermally synthesized. The Dy(3+) ion acts as a typical Y-shaped node, linking to each other to generate an interesting 3D topology structure. Complex 1 is the first 3D DyMOF displaying both ferromagnetic coupling and field-induced two-step magnetic relaxation.

  7. Hydrodynamic coupling of two sharp-edged beams vibrating in a viscous fluid

    PubMed Central

    Intartaglia, Carmela; Soria, Leonardo; Porfiri, Maurizio

    2014-01-01

    In this paper, we study flexural vibrations of two thin beams that are coupled through an otherwise quiescent viscous fluid. While most of the research has focused on isolated beams immersed in placid fluids, inertial and viscous hydrodynamic coupling is ubiquitous across a multitude of engineering and natural systems comprising arrays of flexible structures. In these cases, the distributed hydrodynamic loading experienced by each oscillating structure is not only related to its absolute motion but is also influenced by its relative motion with respect to the neighbouring structures. Here, we focus on linear vibrations of two identical beams for low Knudsen, Keulegan–Carpenter and squeeze numbers. Thus, we describe the fluid flow using unsteady Stokes hydrodynamics and we propose a boundary integral formulation to compute pertinent hydrodynamic functions to study the fluid effect. We validate the proposed theoretical approach through experiments on centimetre-size compliant cantilevers that are subjected to underwater base-excitation. We consider different geometric arrangements, beam interdistances and excitation frequencies to ascertain the model accuracy in terms of the relevant non-dimensional parameters. PMID:24511249

  8. Automotive Underhood Thermal Management Analysis Using 3-D Coupled Thermal-Hydrodynamic Computer Models: Thermal Radiation Modeling

    SciTech Connect

    Pannala, S; D'Azevedo, E; Zacharia, T

    2002-02-26

    The goal of the radiation modeling effort was to develop and implement a radiation algorithm that is fast and accurate for the underhood environment. As part of this CRADA, a net-radiation model was chosen to simulate radiative heat transfer in an underhood of a car. The assumptions (diffuse-gray and uniform radiative properties in each element) reduce the problem tremendously and all the view factors for radiation thermal calculations can be calculated once and for all at the beginning of the simulation. The cost for online integration of heat exchanges due to radiation is found to be less than 15% of the baseline CHAD code and thus very manageable. The off-line view factor calculation is constructed to be very modular and has been completely integrated to read CHAD grid files and the output from this code can be read into the latest version of CHAD. Further integration has to be performed to accomplish the same with STAR-CD. The main outcome of this effort is to obtain a highly scalable and portable simulation capability to model view factors for underhood environment (for e.g. a view factor calculation which took 14 hours on a single processor only took 14 minutes on 64 processors). The code has also been validated using a simple test case where analytical solutions are available. This simulation capability gives underhood designers in the automotive companies the ability to account for thermal radiation - which usually is critical in the underhood environment and also turns out to be one of the most computationally expensive components of underhood simulations. This report starts off with the original work plan as elucidated in the proposal in section B. This is followed by Technical work plan to accomplish the goals of the project in section C. In section D, background to the current work is provided with references to the previous efforts this project leverages on. The results are discussed in section 1E. This report ends with conclusions and future scope of work in section F.

  9. Research on the Dynamic Problems of 3D Cross Coupling Quantum Harmonic Oscillator by Virtue of Intermediate Representation | x> λ, ν

    NASA Astrophysics Data System (ADS)

    Xu, Shi-Min; Xu, Xing-Lei; Li, Hong-Qi

    2008-06-01

    The intermediate representation (namely intermediate coordinate-momentum representation) | x> λ, ν are introduced and employed to research the expression of the operator tauhat{p}+σhat{x} in intermediate representation | x> λ, ν . The systematic Hamilton operator hat{H} of 3D cross coupling quantum harmonic oscillator was diagonalized by virtue of quadratic form theory. The quantity of λ, ν, τand σ were figured out. The dynamic problems of 3D cross coupling quantum harmonic oscillator are researched by virtue of intermediate representation. The energy eigen-value and eigenwave function of 3D cross coupling quantum harmonic oscillator were obtained in intermediate representation. The importance of intermediate representation was discussed. The results show that the Radon transformation of Wigner operator is just the projectional operator | x> λ, ν λ, ν < x|, and the Radon transformation of Wigner function is just a margin distribution.

  10. Modeling the coupling of reaction kinetics and hydrodynamics in a collapsing cavity

    SciTech Connect

    Mishra, Sudib; Deymier, Pierre; Muralidharan, Krishna; Frantziskonis, G.; Pannala, Sreekanth; Simunovic, Srdjan

    2010-01-01

    We introduce a model of cavitation based on the multiphase Lattice Boltzmann method (LBM) that allows for coupling between the hydrodynamics of a collapsing cavity and supported solute chemical species. We demonstrate that this model can also be coupled to deterministic or stochastic chemical reactions. In a two-species model of chemical reactions (with a major and a minor specie), the major difference observed between the deterministic and stochastic reactions takes the form of random fluctuations in concentration of the minor species. We demonstrate that advection associated with the hydrodynamics of a collapsing cavity leads to highly inhomogeneous concentration of solutes. In turn these inhomogeneities in concentration may lead to significant increase in concentration-dependent reaction rates and can result in a local enhancement in the production of minor species.

  11. Calculation of Dynamic Characteristics of Coupled Herringbone Journal and Thrust Hydrodynamic Bearings

    NASA Astrophysics Data System (ADS)

    Zang, Yan; Hatch, Michael R.

    We describe a numerical method for the analysis of dynamic characteristics of coupled herringbone-type journal and thrust hydrodynamic bearings. The non-dimensional generalized Reynolds equation is discretized on a non-orthogonal grid which is mapped into a square. The computational domain conforms to the herringbone grooves to improve the accuracy of the solution. The journal and thrust regions are mapped separately and connected through internal flux boundary conditions. The discretized pressure field is solved iteratively using the rapidly convergent ADI method. The stiffness and damping coefficients are obtained by perturbing the equilibrium solution of the Reynolds equation and solving the perturbation equations. The accuracy of the present calculation is confirmed by comparing with previously existing data. Analyses are performed for self-contained coupled hydrodynamic bearing systems which can be used to support the spindle motor of a magnetic hard-disk drive.

  12. An efficient FSI coupling strategy between Smoothed Particle Hydrodynamics and Finite Element methods

    NASA Astrophysics Data System (ADS)

    Fourey, G.; Hermange, C.; Le Touzé, D.; Oger, G.

    2017-08-01

    An efficient coupling between Smoothed Particle Hydrodynamics (SPH) and Finite Element (FE) methods dedicated to violent fluid-structure interaction (FSI) modeling is proposed in this study. The use of a Lagrangian meshless method for the fluid reduces the complexity of fluid-structure interface handling, especially in presence of complex free surface flows. The paper details the discrete SPH equations and the FSI coupling strategy adopted. Both convergence and robustness of the SPH-FE coupling are performed and discussed. More particularly, the loss and gain in stability is studied according to various coupling parameters, and different coupling algorithms are considered. Investigations are performed on 2D academic and experimental test cases in the order of increasing complexity.

  13. Dynamically Coupled Food-web and Hydrodynamic Modeling with ADH-CASM

    NASA Astrophysics Data System (ADS)

    Piercy, C.; Swannack, T. M.

    2012-12-01

    Oysters and freshwater mussels are "ecological engineers," modifying the local water quality by filtering zooplankton and other suspended particulate matter from the water column and flow hydraulics by impinging on the near-bed flow environment. The success of sessile, benthic invertebrates such as oysters depends on environmental factors including but not limited to temperature, salinity, and flow regime. Typically food-web and other types of ecological models use flow and water quality data as direct input without regard to the feedback between the ecosystem and the physical environment. The USACE-ERDC has developed a coupled hydrodynamic-ecological modeling approach that dynamically couples a 2-D hydrodynamic and constituent transport model, Adaptive Hydraulics (ADH), with a bioenergetics food-web model, the Comprehensive Aquatics Systems Model (CASM), which captures the dynamic feedback between aquatic ecological systems and the environment. We present modeling results from restored oyster reefs in the Great Wicomico River on the western shore of the Chesapeake Bay, which quantify ecosystem services such as the influence of the benthic ecosystem on water quality. Preliminary results indicate that while the influence of oyster reefs on bulk flow dynamics is limited due to the localized influence of oyster reefs, large reefs and the associated benthic ecosystem can create measurable changes in the concentrations of nitrogen, phosphorus, and carbon in the areas around reefs. We also present a sensitivity analysis to quantify the relative sensitivity of the coupled ADH-CASM model to both hydrodynamic and ecological parameter choice.

  14. Predictions of non-LTE spectra from large scale 3D magneto-hydrodynamic modelling of wire array Z-pinches

    NASA Astrophysics Data System (ADS)

    Niasse, Nicolas; Chittenden, Jeremy

    2012-10-01

    The last few years have seen considerable advances in the application of high performance computing techniques to 3D simulations of wire array Z-pinches. Whilst the intense soft X-ray radiation output is the principle application of wire arrays, the ability to encompass spectrally detailed models of this emission within such 3D calculations was thought to be computationally prohibitive. We have developed a non-LTE atomic and radiation physics model with detailed configuration accounting and n-l splitting which is sufficiently streamlined to run in-line with large scale 3D simulations. In order to handle the volume of data generated by the spectral treatment of the billions of numerical cells, a novel data structure derived from a self-balancing binary search tree was developed, enabling the use of non-LTE DCA calculations within large scale 3D simulations for the first time. A brief description of the model is provided and the application of the simulations to understanding the X-ray generation processes within wire array Z-pinches on the Z generator at Sandia National Laboratory is reported. The contribution of the ion temperature and the motion of the unstable plasma at stagnation to the Doppler widths of the lines is described in detail.

  15. Coupled incompressible Smoothed Particle Hydrodynamics model for continuum-based modelling sediment transport

    NASA Astrophysics Data System (ADS)

    Pahar, Gourabananda; Dhar, Anirban

    2017-04-01

    A coupled solenoidal Incompressible Smoothed Particle Hydrodynamics (ISPH) model is presented for simulation of sediment displacement in erodible bed. The coupled framework consists of two separate incompressible modules: (a) granular module, (b) fluid module. The granular module considers a friction based rheology model to calculate deviatoric stress components from pressure. The module is validated for Bagnold flow profile and two standardized test cases of sediment avalanching. The fluid module resolves fluid flow inside and outside porous domain. An interaction force pair containing fluid pressure, viscous term and drag force acts as a bridge between two different flow modules. The coupled model is validated against three dambreak flow cases with different initial conditions of movable bed. The simulated results are in good agreement with experimental data. A demonstrative case considering effect of granular column failure under full/partial submergence highlights the capability of the coupled model for application in generalized scenario.

  16. Coherent dynamic structure factors of strongly coupled plasmas: A generalized hydrodynamic approach

    SciTech Connect

    Luo, Di; Hu, GuangYue; Gong, Tao; Xia, YuQing; Zhao, Bin; Zheng, Jian

    2016-05-15

    A generalized hydrodynamic fluctuation model is proposed to simplify the calculation of the dynamic structure factor S(ω, k) of non-ideal plasmas using the fluctuation-dissipation theorem. In this model, the kinetic and correlation effects are both included in hydrodynamic coefficients, which are considered as functions of the coupling strength (Γ) and collision parameter (kλ{sub ei}), where λ{sub ei} is the electron-ion mean free path. A particle-particle particle-mesh molecular dynamics simulation code is also developed to simulate the dynamic structure factors, which are used to benchmark the calculation of our model. A good agreement between the two different approaches confirms the reliability of our model.

  17. Non-Abelian hydrodynamics and the flow of spin in spin orbit coupled substances

    NASA Astrophysics Data System (ADS)

    Leurs, B. W. A.; Nazario, Z.; Santiago, D. I.; Zaanen, J.

    2008-04-01

    Motivated by the heavy ion collision experiments there is much activity in studying the hydrodynamical properties of non-Abelian (quark-gluon) plasmas. A major question is how to deal with color currents. Although not widely appreciated, quite similar issues arise in condensed matter physics in the context of the transport of spins in the presence of spin-orbit coupling. The key insight is that the Pauli Hamiltonian governing the leading relativistic corrections in condensed matter systems can be rewritten in a language of SU(2) covariant derivatives where the role of the non-Abelian gauge fields is taken by the physical electromagnetic fields: the Pauli system can be viewed as Yang-Mills quantum-mechanics in a 'fixed frame', and it can be viewed as an 'analogous system' for non-Abelian transport in the same spirit as Volovik's identification of the He superfluids as analogies for quantum fields in curved space time. We take a similar perspective as Jackiw and coworkers in their recent study of non-Abelian hydrodynamics, twisting the interpretation into the 'fixed frame' context, to find out what this means for spin transport in condensed matter systems. We present an extension of Jackiw's scheme: non-Abelian hydrodynamical currents can be factored in a 'non-coherent' classical part, and a coherent part requiring macroscopic non-Abelian quantum entanglement. Hereby it becomes particularly manifest that non-Abelian fluid flow is a much richer affair than familiar hydrodynamics, and this permits us to classify the various spin transport phenomena in condensed matter physics in an unifying framework. The "particle based hydrodynamics" of Jackiw et al. is recognized as the high temperature spin transport associated with semiconductor spintronics. In this context the absence of faithful hydrodynamics is well known, but in our formulation it is directly associated with the fact that the covariant conservation of non-Abelian currents turns into a disastrous non

  18. Collective modes of a spin-orbit-coupled Bose-Einstein condensate: A hydrodynamic approach

    NASA Astrophysics Data System (ADS)

    Zheng, Wei; Li, Zhibing

    2012-05-01

    We studied the collective modes of a Bose-Einstein condensate (BEC) with spin-orbit coupling. We developed the hydrodynamic equations for spin-orbit coupled BECs and used them to study collective modes in the plane-wave phase and large Rabi coupling regime for both a uniform BEC and a BEC in a harmonic trap. In the homogeneous situation, we obtained energy spectra of elementary excitations and found that the spin-orbit coupling can increase the effective mass of the atoms, which will suppress the sound velocity. The spin-orbit coupling can also change the spin mixing, which will modify the interaction energy, and may lead to an enhancement of sound velocity. The competition between these two effects gives the behavior of sound velocity. In a harmonic trap, we found that the dipole mode and the breathing mode are coupled together in the plane-wave phase, and these two modes have a π/2 phase difference, because the spin-orbit coupling and the interaction are not invariant under spin rotation. However, in the large Rabi coupling regime, the dipole mode and the breathing mode are decoupled due to the symmetry restriction.

  19. Nitrogen transfers off Walvis Bay: a 3-D coupled physical/biogeochemical modeling approach in the Namibian upwelling system

    NASA Astrophysics Data System (ADS)

    Gutknecht, E.; Dadou, I.; Marchesiello, P.; Cambon, G.; Le Vu, B.; Sudre, J.; Garçon, V.; Machu, E.; Rixen, T.; Kock, A.; Flohr, A.; Paulmier, A.; Lavik, G.

    2013-06-01

    Eastern boundary upwelling systems (EBUS) are regions of high primary production often associated with oxygen minimum zones (OMZs). They represent key regions for the oceanic nitrogen (N) cycle. By exporting organic matter (OM) and nutrients produced in the coastal region to the open ocean, EBUS can play an important role in sustaining primary production in subtropical gyres. However, losses of fixed inorganic N through denitrification and anammox processes take place in oxygen depleted environments such as EBUS, and can potentially mitigate the role of these regions as a source of N to the open ocean. EBUS can also represent a considerable source of nitrous oxide (N2O) to the atmosphere, affecting the atmospheric budget of N2O. In this paper a 3-D coupled physical/biogeochemical model (ROMS/BioEBUS) is used to investigate the N budget in the Namibian upwelling system. The main processes linked to EBUS and associated OMZs are taken into account. The study focuses on the northern part of the Benguela upwelling system (BUS), especially the Walvis Bay area (between 22° S and 24° S) where the OMZ is well developed. Fluxes of N off the Walvis Bay area are estimated in order to understand and quantify (1) the total N offshore export from the upwelling area, representing a possible N source that sustains primary production in the South Atlantic subtropical gyre; (2) export production and subsequent losses of fixed N via denitrification and anammox under suboxic conditions (O2 < 25 mmol O2 m-3); and (3) the N2O emission to the atmosphere in the upwelling area. In the mixed layer, the total N offshore export is estimated as 8.5 ± 3.9 × 1010 mol N yr-1 at 10° E off the Walvis Bay area, with a mesoscale contribution of 20%. Extrapolated to the whole BUS, the coastal N source for the subtropical gyre corresponds to 0.1 ± 0.04 mol N m-2 yr-1. This N flux represents a major source of N for the gyre compared with other N sources, and contributes 28% of the new primary

  20. Sci-Fri AM: YIS-09: The effect of magnetic interference on a coupled MR-linac system: Optimization of 3D FEM linac model.

    PubMed

    St Aubin, J; Steciw, S; Carlone, M; Fallone, B G

    2008-07-01

    The coupling of a 0.2T bi-planar Magnetic Resonance Imager and medical linear accelerator (linac) is proposed to provide real-time Image Guided Radiotherapy. This coupling necessitates the linac to be within the fringe fields of the bi-planar magnets causing magnetic interference. The design and optimization of the minimum required shielding is necessary to reduce the fringe field magnitudes to a point where a clinically useful radiation beam is produced. A first step to designing shielding is the full 3D radio-frequency modeling of the linac waveguide using the Finite Element Method. Various optimizations were performed on the linac model in order to achieve a desired resonant frequency, π/2 phase shift per cavity and other desired properties. An accelerating cavity (AC) and coupling cavity (CC) was first optimized in 3D to have identical resonant frequencies before the full 3D model was generated. In order to increase the capture efficiency of the injected electrons, the electric field in the first AC was reduced by shifting the first CC towards the gun end of the linac. The input waveguide AC dimensions were adjusted to account of the additional coupling iris and the last full AC had its gap length decreased. This work is the first step to determining the minimum magnetic shielding required to produce a clinically useful radiation beam from a coupled MR-Linac system. The fully optimized 3D model more accurately calculates the electric and magnetic field values since it includes the effects of coupling. © 2008 American Association of Physicists in Medicine.

  1. AE3D

    SciTech Connect

    Spong, Donald A

    2016-06-20

    AE3D solves for the shear Alfven eigenmodes and eigenfrequencies in a torodal magnetic fusion confinement device. The configuration can be either 2D (e.g. tokamak, reversed field pinch) or 3D (e.g. stellarator, helical reversed field pinch, tokamak with ripple). The equations solved are based on a reduced MHD model and sound wave coupling effects are not currently included.

  2. A strategy to couple the material point method (MPM) and smoothed particle hydrodynamics (SPH) computational techniques

    NASA Astrophysics Data System (ADS)

    Raymond, Samuel J.; Jones, Bruce; Williams, John R.

    2016-12-01

    A strategy is introduced to allow coupling of the material point method (MPM) and smoothed particle hydrodynamics (SPH) for numerical simulations. This new strategy partitions the domain into SPH and MPM regions, particles carry all state variables and as such no special treatment is required for the transition between regions. The aim of this work is to derive and validate the coupling methodology between MPM and SPH. Such coupling allows for general boundary conditions to be used in an SPH simulation without further augmentation. Additionally, as SPH is a purely particle method, and MPM is a combination of particles and a mesh. This coupling also permits a smooth transition from particle methods to mesh methods, where further coupling to mesh methods could in future provide an effective farfield boundary treatment for the SPH method. The coupling technique is introduced and described alongside a number of simulations in 1D and 2D to validate and contextualize the potential of using these two methods in a single simulation. The strategy shown here is capable of fully coupling the two methods without any complicated algorithms to transform information from one method to another.

  3. Coupled 2D-3D finite element method for analysis of a skin panel with a discontinuous stiffener

    NASA Technical Reports Server (NTRS)

    Wang, J. T.; Lotts, C. G.; Davis, D. D., Jr.; Krishnamurthy, T.

    1992-01-01

    This paper describes a computationally efficient analysis method which was used to predict detailed stress states in a typical composite compression panel with a discontinuous hat stiffener. A global-local approach was used. The global model incorporated both 2D shell and 3D brick elements connected by newly developed transition elements. Most of the panel was modeled with 2D elements, while 3D elements were employed to model the stiffener flange and the adjacent skin. Both linear and geometrically nonlinear analyses were performed on the global model. The effect of geometric nonlinearity induced by the eccentric load path due to the discontinuous hat stiffener was significant. The local model used a fine mesh of 3D brick elements to model the region at the end of the stiffener. Boundary conditions of the local 3D model were obtained by spline interpolation of the nodal displacements from the global analysis. Detailed in-plane and through-the-thickness stresses were calculated in the flange-skin interface near the end of the stiffener.

  4. Analysis of the KROTOS KFC test by coupling X-Ray image analysis and MC3D calculations

    SciTech Connect

    Brayer, C.; Charton, A.; Grishchenko, D.; Fouquart, P.; Bullado, Y.; Compagnon, F.; Correggio, P.; Cassiaut-Louis, N.; Piluso, P.

    2012-07-01

    During a hypothetical severe accident sequence in a Pressurized Water Reactor (PWR), the hot molten materials (corium) issuing from the degraded reactor core may generate a steam explosion if they come in contact with water and may damage the structures and threaten the reactor integrity. The SERENA program is an international OECD project that aims at helping the understanding of this phenomenon also called Fuel Coolant Interaction (FCI) by providing data. CEA takes part in this program by performing tests in its KROTOS facility where steam explosions using prototypic corium can be triggered. Data about the different phases in the premixing are extracted from the KROTOS X-Ray radioscopy images by using KIWI software (KROTOS Image analysis of Water-corium Interaction) currently developed by CEA. The MC3D code, developed by IRSN, is a thermal-hydraulic multiphase code mainly dedicated to FCI studies. It is composed of two applications: premixing and explosion. An overall FCI calculation with MC3D requires a premixing calculation followed by an explosion calculation. The present paper proposes an alternative approach in which all the features of the premixing are extracted from the X-Ray pictures using the KIWI software and transferred to an MC3D dataset for a direct simulation of the explosion. The main hypothesis are discussed as well as the first explosion results obtained with MC3D for the KROTOS KFC test. These results are rather encouraging and are analyzed on the basis of comparisons with the experimental data. (authors)

  5. Probabilistic flood inundation prediction within a coupled hydrodynamic, distributed hydrologic modeling framework

    NASA Astrophysics Data System (ADS)

    Adams, T. E.

    2016-12-01

    Accurate and timely predictions of the lateral exent of floodwaters and water level depth in floodplain areas are critical globally. This paper demonstrates the coupling of hydrologic ensembles, derived from the use of numerical weather prediction (NWP) model forcings as input to a fully distributed hydrologic model. Resulting ensemble output from the distributed hydrologic model are used as upstream flow boundaries and lateral inflows to a 1-D hydrodynamic model. An example is presented for the Potomac River in the vicinity of Washington, DC (USA). The approach taken falls within the broader goals of the Hydrologic Ensemble Prediction EXperiment (HEPEX).

  6. Coupled discrete element and smoothed particle hydrodynamics simulations of the die filling process

    NASA Astrophysics Data System (ADS)

    Breinlinger, Thomas; Kraft, Torsten

    2016-11-01

    Die filling is an important part of the powder compaction process chain, where defects in the final part can be introduced—or prevented. Simulation of this process is therefore a goal for many part producers and has been studied by some researchers already. In this work, we focus on the influence of the surrounding air on the powder flow. We demonstrate the implementing and coupling of the discrete element method for the granular powder and the smoothed particle hydrodynamics method for the gas flow. Application of the method to the die filling process is demonstrated.

  7. Velocity correlations of a thermally fluctuating Brownian particle: A novel model of the hydrodynamic coupling

    NASA Astrophysics Data System (ADS)

    Atzberger, Paul J.

    2006-03-01

    A new derivation of the velocity correlations of a thermally fluctuating Brownian particle is shown by direct calculation from a stochastic hydrodynamic model in which the fluid-particle coupling is treated in a simple manner. The model significantly simplifies the calculation of statistics of a particle and has the virtue of being readily amenable to numerical simulation. To show that the model correctly captures physical features of a Brownian particle the diffusion coefficient in three dimensions is computed and shown to have the correct scaling in the physical parameters. The velocity correlation function for both short and long times scales is then discussed. It is found for short times that the velocity correlation of a particle satisfies an equipartition principle. For long times the autocorrelation function is shown to have non-exponential decay of algebraic order τ capturing well-known hydrodynamic effects [B.J. Alder, T.E. Wainwright, Phys. Rev. A 1 (1) (1970) 18 21]. The results are then compared with numerical simulations of the hydrodynamic model using the computational method proposed in [P.J. Atzberger, P.R. Kramer, C.S. Peskin, A stochastic immersed boundary method for microscopic biological fluid dynamics, (2005), submitted for publication].

  8. Coupled Electro-Hydrodynamic Effects of Electro-Osmosis from Pore Scale to Darcy Scale

    NASA Astrophysics Data System (ADS)

    Schotting, R.; Joekar-Niasar, V.; Leijnse, A.

    2011-12-01

    Electro-osmosis is "movement of a fluid under the effect of an electric field in a porous medium". This phenomenon has many applications in civil engineering (slope stabilization, dewatering), environmental engineering (soil remediation, sludge dewatering), chemical engineering (micro- or nano- mixers), medical engineering (drug delivery), etc. The key factor in electro-osmosis is the competition between the electrochemical and hydrodynamic forces as well as the coupling between the solid surface and the electrolyte properties. The objective of this research is to understand the influence of pore-scale heterogeneities of surface properties on the Darcy-scale behavior. We develop novel analytical solutions for the flow and transport of electrolyte including electro-hydrodynamic forces in a single micro-channel. We propose the complete analytical solution for monovalent electrolyte at full range overlapping double layers, and nonlinear electric field, including the Donan effect in transport of ions. These pore-scale formulations are numerically upscaled to obtain the Darcy-scale behavior. Our results show the contribution of electro-osmotic, chemical-osmotic and hydrodynamic components of the flow equation on pressure field evolution and multi-directional flow field at Darcy scale.

  9. Hydrodynamic Instability and Thermal Coupling in a Dynamic Model of Liquid-Propellant Combustion

    NASA Technical Reports Server (NTRS)

    Margolis, S. B.

    1999-01-01

    For liquid-propellant combustion, the Landau/Levich hydrodynamic models have been combined and extended to account for a dynamic dependence of the burning rate on the local pressure and temperature fields. Analysis of these extended models is greatly facilitated by exploiting the realistic smallness of the gas-to-liquid density ratio rho. Neglecting thermal coupling effects, an asymptotic expression was then derived for the cellular stability boundary A(sub p)(k) where A(sub p) is the pressure sensitivity of the burning rate and k is the disturbance wavenumber. The results explicitly indicate the stabilizing effects of gravity on long-wave disturbances, and those of viscosity and surface tension on short-wave perturbations, and the instability associated with intermediate wavenumbers for critical negative values of A(sub p). In the limit of weak gravity, hydrodynamic instability in liquid-propellant combustion becomes a long-wave, instability phenomenon, whereas at normal gravity, this instability is first manifested through O(1) wavenumbers. In addition, surface tension and viscosity (both liquid and gas) each produce comparable effects in the large-wavenumber regime, thereby providing important modifications to the previous analyses in which one or more of these effects was neglected. For A(sub p)= O, the Landau/Levich results are recovered in appropriate limiting cases, although this typically corresponds to a hydrodynamically unstable parameter regime for p << 1. In addition to the classical cellular form of hydrodynamic stability, there exists a pulsating form corresponding to the loss of stability of steady, planar burning to time-dependent perturbations. This occurs for negative values of the parameter A(sub p), and is thus absent from the original Landau/Levich models. In the extended model, however, there exists a stable band of negative pressure sensitivities bounded above by the Landau type of instability, and below by this pulsating form of hydrodynamic

  10. Hydrodynamic Instability and Thermal Coupling in a Dynamic Model of Liquid-Propellant Combustion

    NASA Technical Reports Server (NTRS)

    Margolis, S. B.

    1999-01-01

    For liquid-propellant combustion, the Landau/Levich hydrodynamic models have been combined and extended to account for a dynamic dependence of the burning rate on the local pressure and temperature fields. Analysis of these extended models is greatly facilitated by exploiting the realistic smallness of the gas-to-liquid density ratio rho. Neglecting thermal coupling effects, an asymptotic expression was then derived for the cellular stability boundary A(sub p)(k) where A(sub p) is the pressure sensitivity of the burning rate and k is the disturbance wavenumber. The results explicitly indicate the stabilizing effects of gravity on long-wave disturbances, and those of viscosity and surface tension on short-wave perturbations, and the instability associated with intermediate wavenumbers for critical negative values of A(sub p). In the limit of weak gravity, hydrodynamic instability in liquid-propellant combustion becomes a long-wave, instability phenomenon, whereas at normal gravity, this instability is first manifested through O(1) wavenumbers. In addition, surface tension and viscosity (both liquid and gas) each produce comparable effects in the large-wavenumber regime, thereby providing important modifications to the previous analyses in which one or more of these effects was neglected. For A(sub p)= O, the Landau/Levich results are recovered in appropriate limiting cases, although this typically corresponds to a hydrodynamically unstable parameter regime for p << 1. In addition to the classical cellular form of hydrodynamic stability, there exists a pulsating form corresponding to the loss of stability of steady, planar burning to time-dependent perturbations. This occurs for negative values of the parameter A(sub p), and is thus absent from the original Landau/Levich models. In the extended model, however, there exists a stable band of negative pressure sensitivities bounded above by the Landau type of instability, and below by this pulsating form of hydrodynamic

  11. Assimilation of satellite data to 3D hydrodynamic model of Lake Säkylän Pyhäjärvi.

    PubMed

    Mano, Akiko; Malve, Olli; Koponen, Sampsa; Kallio, Kari; Taskinen, Antti; Ropponen, Janne; Juntunen, Janne; Liukko, Ninni

    2015-01-01

    To analyze the applicability of direct insertion of total suspended matter (TSM) concentration field based on turbidity derived from satellite data to numerical simulation, dispersion studies of suspended matter in Lake Säkylän Pyhäjärvi (lake area 154 km²; mean depth 5.4 m) were conducted using the 3D COHERENS simulation model. To evaluate the practicality of direct insertion, five cases with different initialization frequencies were conducted: (1) every time, when satellite data were available; (2) every 10 days; (3) 20 days; (4) 30 days; and (5) control run without repeated initialization. To determine the effectiveness of initialization frequency, three methods of comparison were used: simple spatial differences of TSM concentration without biomass in the lake surface layer; averaged spatial differences between initialization data and the forecasts; and time series of TSM concentration and observation data at 1 m depth at the deepest point of the lake. Results showed that direct insertion improves the forecast significantly, even if it is applied less often.

  12. CHEMO-hydrodynamic coupling between forced advection in porous media and self-sustained chemical waves

    NASA Astrophysics Data System (ADS)

    Atis, S.; Saha, S.; Auradou, H.; Martin, J.; Rakotomalala, N.; Talon, L.; Salin, D.

    2012-09-01

    Autocatalytic reaction fronts between two reacting species in the absence of fluid flow, propagate as solitary waves. The coupling between autocatalytic reaction front and forced simple hydrodynamic flows leads to stationary fronts whose velocity and shape depend on the underlying flow field. We address the issue of the chemico-hydrodynamic coupling between forced advection in porous media and self-sustained chemical waves. Towards that purpose, we perform experiments over a wide range of flow velocities with the well characterized iodate arsenious acid and chlorite-tetrathionate autocatalytic reactions in transparent packed beads porous media. The characteristics of these porous media such as their porosity, tortuosity, and hydrodynamics dispersion are determined. In a pack of beads, the characteristic pore size and the velocity field correlation length are of the order of the bead size. In order to address these two length scales separately, we perform lattice Boltzmann numerical simulations in a stochastic porous medium, which takes into account the log-normal permeability distribution and the spatial correlation of the permeability field. In both experiments and numerical simulations, we observe stationary fronts propagating at a constant velocity with an almost constant front width. Experiments without flow in packed bead porous media with different bead sizes show that the front propagation depends on the tortuous nature of diffusion in the pore space. We observe microscopic effects when the pores are of the size of the chemical front width. We address both supportive co-current and adverse flows with respect to the direction of propagation of the chemical reaction. For supportive flows, experiments and simulations allow observation of two flow regimes. For adverse flow, we observe upstream and downstream front motion as well as static front behaviors over a wide range of flow rates. In order to understand better these observed static state fronts, flow

  13. Low voltage operation of electro-absorption modulator promising for high-definition 3D imaging application using a three step asymmetric coupled quantum well structure

    NASA Astrophysics Data System (ADS)

    Na, Byung Hoon; Ju, Gun Wu; Choi, Hee Ju; Lee, Soo Kyung; Jeon, Jin Myeong; Cho, Yong Chul; Park, Yong Hwa; Park, Chang Young; Tak Lee, Yong

    2015-01-01

    In this paper, we propose a transmission type electro-absorption modulator (EAM) operating at 850 nm having low operating voltage and high absorption change with low insertion loss using a novel three step asymmetric coupled quantum well (3 ACQW) structure which can be used as an optical image shutter for high-definition (HD) three dimensional (3D) imaging. Theoretical calculations show that the exciton red shift of 3 ACQW structure is more than two times larger than that of rectangular quantum well (RQW) structure while maintaining high absorption change. The EAM having coupled cavities with 3 ACQW structure shows a wide spectral bandwidth and high amplitude modulation at a bias voltage of only -8V, which is 41% lower in operating voltage than that of RQW, making the proposed EAM highly attractive as an optical image shutter for HD 3D imaging applications.

  14. A reduced-order model based on the coupled 1D-3D finite element simulations for an efficient analysis of hemodynamics problems

    NASA Astrophysics Data System (ADS)

    Soudah, Eduardo; Rossi, Riccardo; Idelsohn, Sergio; Oñate, Eugenio

    2014-10-01

    A reduced-order model for an efficient analysis of cardiovascular hemodynamics problems using multiscale approach is presented in this work. Starting from a patient-specific computational mesh obtained by medical imaging techniques, an analysis methodology based on a two-step automatic procedure is proposed. First a coupled 1D-3D Finite Element Simulation is performed and the results are used to adjust a reduced-order model of the 3D patient-specific area of interest. Then, this reduced-order model is coupled with the 1D model. In this way, three-dimensional effects are accounted for in the 1D model in a cost effective manner, allowing fast computation under different scenarios. The methodology proposed is validated using a patient-specific aortic coarctation model under rest and non-rest conditions.

  15. Coupled Modeling of Hydrodynamics and Sound in Coastal Ocean for Renewable Ocean Energy Development

    SciTech Connect

    Long, Wen; Jung, Ki Won; Yang, Zhaoqing; Copping, Andrea; Deng, Z. Daniel

    2016-03-01

    An underwater sound model was developed to simulate sound propagation from marine and hydrokinetic energy (MHK) devices or offshore wind (OSW) energy platforms. Finite difference methods were developed to solve the 3D Helmholtz equation for sound propagation in the coastal environment. A 3D sparse matrix solver with complex coefficients was formed for solving the resulting acoustic pressure field. The Complex Shifted Laplacian Preconditioner (CSLP) method was applied to solve the matrix system iteratively with MPI parallelization using a high performance cluster. The sound model was then coupled with the Finite Volume Community Ocean Model (FVCOM) for simulating sound propagation generated by human activities, such as construction of OSW turbines or tidal stream turbine operations, in a range-dependent setting. As a proof of concept, initial validation of the solver is presented for two coastal wedge problems. This sound model can be useful for evaluating impacts on marine mammals due to deployment of MHK devices and OSW energy platforms.

  16. A Tightly Coupled Non-Equilibrium Magneto-Hydrodynamic Model for Inductively Coupled RF Plasmas

    DTIC Science & Technology

    2016-02-29

    conditions over a broad spectrum of operating conditions demonstrate the robustness of the proposed coupled numerical method. The analysis of chemical...by means of an implicit Finite Volume method. The results obtained in both LTE and NLTE conditions over a broad spectrum of operating conditions...flow-field and electromagnetic phenomena inside an ICP torch requires, in theory, the coupled solution of the Navier-Stokes and the Maxwell equations

  17. Hydrodynamic planetary thermosphere model: 2. Coupling of an electron transport/energy deposition model

    NASA Astrophysics Data System (ADS)

    Tian, Feng; Solomon, Stanley C.; Qian, Liying; Lei, Jiuhou; Roble, Raymond G.

    2008-07-01

    An electron transport/energy deposition model is expanded to include atomic nitrogen and is coupled with a 1-D hydrodynamic thermosphere model. The coupled model is used to investigate the response of the Earth's thermosphere under extreme solar EUV conditions and is compared with previous studies. It is found that (1) the parameterization of Swartz and Nisbet (1972) underestimates the ambient electron heating by photoelectrons significantly in the upper thermosphere of the Earth under conditions with greater than 3 times the present solar EUV irradiance; (2) the transition of the Earth's thermosphere from a hydrostatic equilibrium regime to a hydrodynamic regime occurs at a smaller solar EUV flux condition when enhanced, more realistic, and self-consistent, ambient electron heating by photoelectrons is accounted for; (3) atomic nitrogen becomes the dominant neutral species in the upper thermosphere (competing against atomic oxygen) under extreme solar EUV conditions, and the electron impact processes of atomic nitrogen are important for both the chemistry and energetics in the corresponding thermosphere/ionosphere; (4) N+ remains a minor ion compared to O+, even when atomic nitrogen dominates the exobase; and (5) adiabatic cooling does not play an important role in electron gas energy budget. These findings highlight the importance of an electron transport/energy deposition model when investigating the thermosphere and ionosphere of terrestrial planets in their early evolutionary stages.

  18. Coupling hydrodynamic and wave models: first step and sensitivity experiments in the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Clementi, Emanuela; Oddo, Paolo; Drudi, Massimiliano; Pinardi, Nadia; Korres, Gerasimos; Grandi, Alessandro

    2017-10-01

    This work describes the first step towards a fully coupled modelling system composed of an ocean circulation and a wind wave model. Sensitivity experiments are presented for the Mediterranean Sea where the hydrodynamic model NEMO is coupled with the third-generation wave model WaveWatchIII (WW3). Both models are implemented at 1/16° horizontal resolution and are forced by ECMWF 1/4° horizontal resolution atmospheric fields. The models are two-way coupled at hourly intervals exchanging the following fields: sea surface currents and temperature are transferred from NEMO to WW3 by modifying the mean momentum transfer of waves and the wind speed stability parameter, respectively. The neutral drag coefficient computed by WW3 is then passed to NEMO, which computes the surface stress. Five-year (2009-2013) numerical experiments were carried out in both uncoupled and coupled mode. In order to validate the modelling system, numerical results were compared with coastal and drifting buoys and remote sensing data. The results show that the coupling of currents with waves improves the representation of the wave spectrum. However, the wave-induced drag coefficient shows only minor improvements in NEMO circulation fields, such as temperature, salinity, and currents.

  19. Coupling hydrodynamic and wave models: first step and sensitivity experiments in the Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Clementi, Emanuela; Oddo, Paolo; Drudi, Massimiliano; Pinardi, Nadia; Korres, Gerasimos; Grandi, Alessandro

    2017-07-01

    This work describes the first step towards a fully coupled modelling system composed of an ocean circulation and a wind wave model. Sensitivity experiments are presented for the Mediterranean Sea where the hydrodynamic model NEMO is coupled with the third-generation wave model WaveWatchIII (WW3). Both models are implemented at 1/16° horizontal resolution and are forced by ECMWF 1/4° horizontal resolution atmospheric fields. The models are two-way coupled at hourly intervals exchanging the following fields: sea surface currents and temperature are transferred from NEMO to WW3 by modifying the mean momentum transfer of waves and the wind speed stability parameter, respectively. The neutral drag coefficient computed by WW3 is then passed to NEMO, which computes the surface stress. Five-year (2009-2013) numerical experiments were carried out in both uncoupled and coupled mode. In order to validate the modelling system, numerical results were compared with coastal and drifting buoys and remote sensing data. The results show that the coupling of currents with waves improves the representation of the wave spectrum. However, the wave-induced drag coefficient shows only minor improvements in NEMO circulation fields, such as temperature, salinity, and currents.

  20. 3D mapping of geological contacts by coupling Aerial Laser Scanning, Gigapixel photography and open access pictures

    NASA Astrophysics Data System (ADS)

    Nguyen, Liliane; Guerin, Antoine; Abellán, Antonio; Carrea, Dario; Derron, Marc-Henri; Jaboyedoff, Michel

    2015-04-01

    Multiple sources of geological data exist nowadays, most of them are in 2D (e.g. geological maps, geological panoramic sketch), and only a few are in 3D (e.g. block diagram). One of the current challenges in geological mapping consists not only in providing a more consistent 3D data, but also in pursuing a gathering and a harmonisation of the geological information in order to obtain a more consistent interpretations of the 3D geological models. New remote sensing techniques have significantly improved the representation of three-dimensional surfaces during the last decade, especially for steep and inaccessible rockcliffs. Therefore, we present an exploratory study aiming to find a reliable method for carrying out a three-dimensional mapping of geological contacts using a High Resolution Digital Elevation Model (HRDEM) with a 1 meter cell size. To this end, we selected the "Scex Rouge Mountain" as pilot study area. This outcrop, which is located in the Diablerets Massif (Vaud, Swiss Alps), has the particularity to present very distinguishable folded geological boundaries on its Southern face. The Southern slope belongs to the Wildhorn nappe, which is mainly composed of sedimentary rocks. The top-layer is composed of siliceous limestones, the well-visible fold layer is the "Pygurus layer" and consist of sandy limestone. Finally the bottom-layer includes marly schist and clayey limestones. At first, different sources of information has been draped on the HRDEM of the Scex Rouge Mountain, including not only classical geological maps (1:25 000) but also different sources of imagery (e.g. gigapixel panoramas, open access images, etc.). In a second step, several three-dimensional polylines have been drawn following the geological limit on each drapped HRDEM. Then we investigated the accuracy of 2D classical geological maps by comparing these geological limits with the drawn 3D polylines. Furthermore, in order to evaluate the accuracy of the method, a ground truth needs

  1. An ultrasound tomography system with polyvinyl alcohol (PVA) moldings for coupling: in vivo results for 3-D pulse-echo imaging of the female breast.

    PubMed

    Koch, Andreas; Stiller, Florian; Lerch, Reinhard; Ermert, Helmut

    2015-02-01

    Full-angle spatial compounding (FASC) is a concept for pulse-echo imaging using an ultrasound tomography (UST) system. With FASC, resolution is increased and speckles are suppressed by averaging pulse-echo data from 360°. In vivo investigations have already shown a great potential for 2-D FASC in the female breast as well as for finger-joint imaging. However, providing a small number of images of parallel cross-sectional planes with enhanced image quality is not sufficient for diagnosis. Therefore, volume data (3-D) is needed. For this purpose, we further developed our UST add-on system to automatically rotate a motorized array (3-D probe) around the object of investigation. Full integration of external motor and ultrasound electronics control in a custom-made program allows acquisition of 3-D pulse-echo RF datasets within 10 min. In case of breast cancer imaging, this concept also enables imaging of near-thorax tissue regions which cannot be achieved by 2-D FASC. Furthermore, moldings made of polyvinyl alcohol hydrogel (PVA-H) have been developed as a new acoustic coupling concept. It has a great potential to replace the water bath technique in UST, which is a critical concept with respect to clinical investigations. In this contribution, we present in vivo results for 3-D FASC applied to imaging a female breast which has been placed in a PVA-H molding during data acquisition. An algorithm is described to compensate time-of-flight and consider refraction at the water-PVA-H molding and molding-tissue interfaces. Therefore, the mean speed of sound (SOS) for the breast tissue is estimated with an image-based method. Our results show that the PVA-H molding concept is applicable and feasible and delivers good results. 3-D FASC is superior to 2-D FASC and provides 3-D volume data at increased image quality.

  2. Coupling Between Microstrip Lines and Finite Ground Coplanar Lines Embedded in Polyimide Layers for 3D-MMICs on Silicon

    NASA Technical Reports Server (NTRS)

    Ponchak, G. E.; Bushyager, N.; Papapolymerou, J.; Tentzeris, E. M.; Laskar, J.

    2002-01-01

    Three-dimensional circuits built upon multiple layers of polyimide are required for constructing Si/SiGe monolithic microwave/mm-wave integrated circuits on CMOS (low resistivity) Si wafers. It is expected that these circuits will replace the ones fabricated on GaAs and reduce the overall system cost. However, the closely spaced transmission lines that are required for a high-density circuit environment are susceptible to high levels of cross-coupling, which degrades the overall circuit performance. In this paper, theoretical and experimental results on coupling and ways to reduce it are presented for two types of transmission lines: a) the microstrip line and b) the Finite Ground Coplanar (FGC) line. For microstrip lines it is shown that a fence of metalized via-holes can significantly reduce coupling, especially in the case when both lines are on the same polyimide layer or when the shielding structure extends through several polyimide layers. For closely spaced microstrip lines, coupling is lower for a metal filled trench shield than a via-hole fence. Coupling amongst microstrip lines is dependent on the ratio of line separation to polyimide thickness and is primarily due to magnetic fields. For FGC lines it is shown that they have in general low coupling that can be reduced significantly when there is even a small gap between the ground planes of each line. FGC lines have approximately 8 dB lower coupling than coupled coplanar waveguides (CPW). In addition, forward and backward characteristics of the FGC lines do not resemble those of other transmission lines such as microstrip. Therefore, the coupling mechanism of the FGC lines is different compared to thin film microstrip lines.

  3. Mutual coupling of hydrologic and hydrodynamic models - a viable approach for improved large-scale inundation estimates?

    NASA Astrophysics Data System (ADS)

    Hoch, Jannis; Winsemius, Hessel; van Beek, Ludovicus; Haag, Arjen; Bierkens, Marc

    2016-04-01

    Due to their increasing occurrence rate and associated economic costs, fluvial floods are large-scale and cross-border phenomena that need to be well understood. Sound information about temporal and spatial variations of flood hazard is essential for adequate flood risk management and climate change adaption measures. While progress has been made in assessments of flood hazard and risk on the global scale, studies to date have made compromises between spatial resolution on the one hand and local detail that influences their temporal characteristics (rate of rise, duration) on the other. Moreover, global models cannot realistically model flood wave propagation due to a lack of detail in channel and floodplain geometry, and the representation of hydrologic processes influencing the surface water balance such as open water evaporation from inundated water and re-infiltration of water in river banks. To overcome these restrictions and to obtain a better understanding of flood propagation including its spatio-temporal variations at the large scale, yet at a sufficiently high resolution, the present study aims to develop a large-scale modeling tool by coupling the global hydrologic model PCR-GLOBWB and the recently developed hydrodynamic model DELFT3D-FM. The first computes surface water volumes which are routed by the latter, solving the full Saint-Venant equations. With DELFT3D FM being capable of representing the model domain as a flexible mesh, model accuracy is only improved at relevant locations (river and adjacent floodplain) and the computation time is not unnecessarily increased. This efficiency is very advantageous for large-scale modelling approaches. The model domain is thereby schematized by 2D floodplains, being derived from global data sets (HydroSHEDS and G3WBM, respectively). Since a previous study with 1way-coupling showed good model performance (J.M. Hoch et al., in prep.), this approach was extended to 2way-coupling to fully represent evaporation

  4. Impairment-Based 3-D Robotic Intervention Improves Upper Extremity Work Area in Chronic Stroke: Targeting Abnormal Joint Torque Coupling With Progressive Shoulder Abduction Loading

    PubMed Central

    Ellis, Michael D.; Sukal-Moulton, Theresa M.; Dewald, Julius P. A.

    2010-01-01

    The implementation of a robotic system (ACT3D) that allowed for a quantitative measurement of abnormal joint torque coupling in chronic stroke survivors and, most importantly, a quantitative means of initiating and progressing an impairment-based intervention, is described. Individuals with chronic moderate to severe stroke (n = 8) participated in this single-group pretest-posttest design study. Subjects were trained over eight weeks by progressively increasing the level of shoulder abduction loading experienced by the participant during reaching repetitions as performance improved. Reaching work area was evaluated pre- and postintervention for ten different shoulder abduction loading levels along with isometric single-joint strength and a qualitative clinical assessment of impairment. There was a significant effect of session (pre versus post) with an increase in reaching work area, despite no change in single-joint strength. This data suggests that specifically targeting the abnormal joint torque coupling impairment through progressive shoulder abduction loading is an effective strategy for improving reaching work area following hemiparetic stroke. Application of robotics, namely, the ACT3D, allowed for quantitative control of the exercise parameters needed to directly target the synergistic coupling impairment. The targeted reduction of abnormal joint torque coupling is likely the key factor explaining the improvements in reaching range of motion achieved with this intervention. PMID:20657711

  5. Coupled Biogeochemical and Hydrodynamic Measurements over a Palauan Seagrass Bed: Can Seagrasses Mitigate Local Acidification Stress?

    NASA Astrophysics Data System (ADS)

    Hirsh, H.; Torres, W.; Shea, M.

    2016-02-01

    Interest in seagrass beds as a tool to locally mitigate ocean acidification is growing rapidly. Much of the interest in seagrasses is motivated by their root structure, which is able to sequester carbon over interannual and longer timescales. Far less is known about their biogeochemistry on shorter diel timescales, yet we know that diel cycle variation in CO2 chemistry on coral reefs can be quite substantial. Understanding short-term seagrass biogeochemistry is critical to evaluating if, and how, seagrasses may eventually be utilized to mitigate OA on coral reefs. We present the results of a high-resolution, 24-hour control volume experiment conducted in the Republic of Palau covering a 50m x 100m seagrass bed. Our dataset includes diel cycles of hydrodynamic (current profiles and turbulence), biogeochemical (pH, pCO2, TA, DIC, and O2), and environmental (temperature and salinity) parameters. We use these coupled hydrodynamic-biogeochemical measurements to estimate ecosystem metabolism and better quantify the capacity of seagrass to mitigate local acidification through the photosynthetic uptake of CO2. Combining our field observations with box model predictions allows us to gain better insight into the mechanisms that control seagrass metabolism and their ability to buffer CO2 for downstream corals.

  6. A New Method for Coupling Implicit Radiation Transport and Explicit Godunov Hydrodynamics

    NASA Astrophysics Data System (ADS)

    Calder, A. C.; Eastman, R. G.

    1999-12-01

    Incorporation of radiation transport into an Eulerian, general purpose astrophysical simulation code--one that uses a higher order Godunov scheme such as PPM for computing fluxes--is a challenging problem. The challenge lies in devising a scheme that remains accurate for all the extremes of physical conditions which might exist in an object where radiation dominates the dynamics, and where photon mean free paths might range from very short to infinite. Solution of the multi-D hydrodynamics equations is usually performed explicitly. Modern methods employ high accuracy advection schemes, with features built in to capture shocks and sharpen contact discontinuities. The radiation transport must be computed implicitly, which necessarily entails much lower accuracy. To address these difficulties, we have developed a new technique for coupling implicit radiation transport and explicit hydrodynamics that retains the high accuracy of the explicit advection scheme in regions of high optical depth, while at the same time allowing the radiation and gas to decouple in regions where the photon mean free path is long compared to the zone size. We are implementing this in the University of Chicago ASCI Center FLASH code as two temperature flux-limited diffusion. We will describe the method we have developed and give examples. This work was supported by the U.S Department of Energy under grant No. B341495 to the Center for Astrophysical Thermonuclear Flashes at the University of Chicago and at LLNL by grant W-7405-ENG-48.

  7. Computation of 1-D shock structure using nonlinear coupled constitutive relations and generalized hydrodynamic equations

    NASA Astrophysics Data System (ADS)

    Zhao, Wenwen; Jiang, Zhongzheng; Chen, Weifang

    2016-11-01

    The moment methods in rarefied gas dynamics could be divided into generalized hydrodynamic equations (GHE) and extended hydrodynamic equations (EHE), e.g., Burnett equations, Grad equations and R-13 equations, theoretically. Eu firstly developed the GHE based on a non-equilibrium canonical distribution function and demonstrated the thermodynamically consistent of this model. Subsequently, nonlinear coupled constitutive relations (NCCR) was proposed by Myong by omitting the product of heat flux and velocity gradient in GHE to reduce the computational complexity. According to the successful application in 1-D shock wave structure and 2-D flat plate flow, the capability of NCCR has already been demonstrated successfully. The motivation of this study was to investigate the different behavior of NCCR and GHE for monatomic and diatomic gases in one-dimensional shock structure problems. Therefore, argon and nitrogen shock structure was calculated using both GHE and NCCR model up to Ma=50. The 3rd order MUSCL scheme for inviscid term and the 2nd order central difference scheme for viscid scheme were employed to carry out the computations. Finally, the present results including shock wave profile and its qualitative properties by NCCR and GHE are compared with that of DSMC and NS equations. The results showed that the GHE yield 1-D shock wave in much closer agreement with DSMC results than do the NCCR model without considering the computational complexity and efficiency in present cases.

  8. Coupling hydrodynamics to nonequilibrium degrees of freedom in strongly interacting quark-gluon plasma.

    PubMed

    Heller, Michal P; Janik, Romuald A; Spaliński, Michał; Witaszczyk, Przemysław

    2014-12-31

    Relativistic hydrodynamics simulations of quark-gluon plasma play a pivotal role in our understanding of heavy ion collisions at RHIC and LHC. They are based on a phenomenological description due to Müller, Israel, Stewart (MIS) and others, which incorporates viscous effects and ensures a well-posed initial value problem. Focusing on the case of conformal plasma we propose a generalization which includes, in addition, the dynamics of the least damped far-from-equilibrium degree of freedom found in strongly coupled plasmas through the AdS/CFT correspondence. We formulate new evolution equations for general flows and then test them in the case of N=4 super Yang-Mills plasma by comparing their solutions alongside solutions of MIS theory with numerical computations of isotropization and boost-invariant flow based on holography. In these tests the new equations reproduce the results of MIS theory when initialized close to the hydrodynamic stage of evolution, but give a more accurate description of the dynamics when initial conditions are set in the preequilibrium regime.

  9. Coupling Between Microstrip Lines with Finite Width Ground Plane Embedded in Polyimide Layers for 3D-MMICs on Si

    NASA Technical Reports Server (NTRS)

    Ponchak, George E.; Dalton, Edan; Tentzeris, Emmanouil M.; Papapolymerou, John; Williams, W. Dan (Technical Monitor)

    2001-01-01

    Three-dimensional circuits built upon multiple layers of polyimide are required for constructing Si/SiGe monolithic microwave/millimeter-wave integrated circuits on complementary metal oxide semiconductor (CMOS) (low resistivity) Si wafers. Thin film microstrip lines (TFMS) with finite width ground planes embedded in the polyimide are often used. However, the closely spaced TFMS lines are susceptible to high levels of coupling, which degrades circuit performance. In this paper, Finite Difference Time Domain (FDTD) analysis and experimental measurements are used to show that the ground planes must be connected by via holes to reduce coupling in both the forward and backward directions.

  10. Photobioreactors for microalgal cultures: A Lagrangian model coupling hydrodynamics and kinetics.

    PubMed

    Olivieri, Giuseppe; Gargiulo, Luigi; Lettieri, Paola; Mazzei, Luca; Salatino, Piero; Marzocchella, Antonio

    2015-01-01

    Closed photobioreactors have to be optimized in terms of light utilization and overall photosynthesis rate. A simple model coupling the hydrodynamics and the photosynthesis kinetics has been proposed to analyze the photosynthesis dynamics due to the continuous shuttle of microalgae between dark and lighted zones of the photobioreactor. Microalgal motion has been described according to a stochastic Lagrangian approach adopting the turbulence model suitable for the photobioreactor configuration (single vs. two-phase flows). Effects of light path, biomass concentration, turbulence level and irradiance have been reported in terms of overall photosynthesis rate. Different irradiation strategies (internal, lateral and rounding) and several photobioreactor configurations (flat, tubular, bubble column, airlift) have been investigated. Photobioreactor configurations and the operating conditions to maximize the photosynthesis rate have been pointed out. Results confirmed and explained the common experimental observation that high concentrated cultures are not photoinhibited at high irradiance level.

  11. Efficient and accurate numerical schemes for a hydro-dynamically coupled phase field diblock copolymer model

    NASA Astrophysics Data System (ADS)

    Cheng, Qing; Yang, Xiaofeng; Shen, Jie

    2017-07-01

    In this paper, we consider numerical approximations of a hydro-dynamically coupled phase field diblock copolymer model, in which the free energy contains a kinetic potential, a gradient entropy, a Ginzburg-Landau double well potential, and a long range nonlocal type potential. We develop a set of second order time marching schemes for this system using the ;Invariant Energy Quadratization; approach for the double well potential, the projection method for the Navier-Stokes equation, and a subtle implicit-explicit treatment for the stress and convective term. The resulting schemes are linear and lead to symmetric positive definite systems at each time step, thus they can be efficiently solved. We further prove that these schemes are unconditionally energy stable. Various numerical experiments are performed to validate the accuracy and energy stability of the proposed schemes.

  12. A coupled 3D-1D numerical monodomain solver for cardiac electrical activation in the myocardium with detailed Purkinje network

    NASA Astrophysics Data System (ADS)

    Vergara, Christian; Lange, Matthias; Palamara, Simone; Lassila, Toni; Frangi, Alejandro F.; Quarteroni, Alfio

    2016-03-01

    We present a model for the electrophysiology in the heart to handle the electrical propagation through the Purkinje system and in the myocardium, with two-way coupling at the Purkinje-muscle junctions. In both the subproblems the monodomain model is considered, whereas at the junctions a resistor element is included that induces an orthodromic propagation delay from the Purkinje network towards the heart muscle. We prove a sufficient condition for convergence of a fixed-point iterative algorithm to the numerical solution of the coupled problem. Numerical comparison of activation patterns is made with two different combinations of models for the coupled Purkinje network/myocardium system, the eikonal/eikonal and the monodomain/monodomain models. Test cases are investigated for both physiological and pathological activation of a model left ventricle. Finally, we prove the reliability of the monodomain/monodomain coupling on a realistic scenario. Our results underlie the importance of using physiologically realistic Purkinje-trees with propagation solved using the monodomain model for simulating cardiac activation.

  13. Consistent Temperature Coupling with Thermal Fluctuations of Smooth Particle Hydrodynamics and Molecular Dynamics

    PubMed Central

    Ganzenmüller, Georg C.; Hiermaier, Stefan; Steinhauser, Martin O.

    2012-01-01

    We propose a thermodynamically consistent and energy-conserving temperature coupling scheme between the atomistic and the continuum domain. The coupling scheme links the two domains using the DPDE (Dissipative Particle Dynamics at constant Energy) thermostat and is designed to handle strong temperature gradients across the atomistic/continuum domain interface. The fundamentally different definitions of temperature in the continuum and atomistic domain – internal energy and heat capacity versus particle velocity – are accounted for in a straightforward and conceptually intuitive way by the DPDE thermostat. We verify the here-proposed scheme using a fluid, which is simultaneously represented as a continuum using Smooth Particle Hydrodynamics, and as an atomistically resolved liquid using Molecular Dynamics. In the case of equilibrium contact between both domains, we show that the correct microscopic equilibrium properties of the atomistic fluid are obtained. As an example of a strong non-equilibrium situation, we consider the propagation of a steady shock-wave from the continuum domain into the atomistic domain, and show that the coupling scheme conserves both energy and shock-wave dynamics. To demonstrate the applicability of our scheme to real systems, we consider shock loading of a phospholipid bilayer immersed in water in a multi-scale simulation, an interesting topic of biological relevance. PMID:23300586

  14. Biogeochemistry and plankton variabilities in the Mediterranean Sea: a long-term 3D coupled modelling approach

    NASA Astrophysics Data System (ADS)

    Dos Santos, Alex; Ulses, Caroline; Estournel, Claude; Marsaleix, Patrick

    2017-04-01

    The Mediterranean Sea is a semi-enclosed basin between Europe, Asia and North Africa. Around half a billion people (7% of the world population) live in this region, in 22 countries. The Mediterranean Sea is crossed by about one third of the world's total merchant shipping each year, representing a strong anthropogenic pressure on its ecosystems. Additionally, important climatic differences between Africa and Europe make the Mediterranean Sea a high gradients area, and thus can explain why it is very sensitive to climate change. Indeed, changes in temperature and salinity have already been observed in its deep waters. The semi-enclosed sea displays hydrodynamical processes which can be observed on a global scale, such as a thermohaline circulation or dense water formations, and a wide variety of trophic regimes. Studying environmental changes in the Mediterranean Sea can therefore bring insights for the global ocean. In this context, we propose to investigate the impact of climate and anthropogenic changes on the Mediterranean Sea pelagic planktonic ecosystems. A long-term historical simulation (hindcast) is performed in order to evaluate these changes. The regional ocean model NEMO-MED12, computing the circulation at a 1/12° resolution, is used to force offline the biogeochemical model ECO3M-S. After a validation of the simulation with existing data, a focus is made on the interannual variability of our key variables for the studied period: biogeochemical cycles are discussed, and nutrients budgets are computed on a basin scale. Finally, estimations of subsequent primary production and the structure of projected planktonic ecosystems are analysed.

  15. [Determination of carmine in carbonated beverages using 3-D fluorescence spectra coupled with second-order calibration algorithm].

    PubMed

    Li, Run; Chen, Guo-qing; Zhu, Chun; Kong, Fan-biao; Hu, Yang-jun

    2014-12-01

    Three-dimensional fluorescence spectra combined with second-order calibration algorithm based on alternate a weighted residual (ANWE) was applied to the direct concentration determination of carmine in carbonated beverages. Firstly, 3-D fluorescence spectra of carmine and sunset yellow mixed solutions with different concentrations were obtained by employing spectrometer, and analyzed by using ANWE, the correlation coefficient between calibration concentration and the actual concentration was 0.9917, and the average recovery was 100.92%±2.71%. The results show that the ANWE algorithm is reliable. Then, the commercial carbonated soft drinks in 8, 9, 12 and 13 times diluted concentration were detected by using ANWE algorithm, the correlation coefficient between relative concentration and the actual concentration were 0.9930, 0.9930, 0.9932 and 0.7932, respectively, and the contents of carmine in beverage were 38.88, 37.71, 37.68 and 39.65 μg · mL(-1), respectively. The average concentration was (38.48±0.96) μg · mL(-1). Finally, the standard addition method was applied to estimate the prediction accuracy between calibration concentration and the actual concentration was 0.9935, and the average recovery was 102.99%±2.15%. The results can provide a new idea for the rapid content determination of food pigments in commercial beverages.

  16. Coupling a 3D patch model and a rockfall module to assess rockfall protection in mountain forests.

    PubMed

    Woltjer, M; Rammer, W; Brauner, M; Seidl, R; Mohren, G M J; Lexer, M J

    2008-05-01

    Many forests in the Alps are acknowledged for protecting objects, such as (rail) roads, against rockfall. However, there is a lack of knowledge on efficient silvicultural strategies and interventions to maintain these forests at optimal protection level. Therefore, assessment tools are required that quantify the rockfall protection effect of forest stands over time, and thereby provide the ability to evaluate the necessity and effect of management interventions. This paper introduces such a tool that consists of a 3D rockfall module embedded in the patch based forest simulator PICUS. The latter is extended for this study with a new regeneration module. In a series of experiments the new combined simulation tool is evaluated with regard to parameter sensitivity, model intercomparison experiments with recently proposed algorithms from the literature, and the ability to respond realistically to different management regimes in rockfall protection forests. Results confirm the potential of the new tool for realistic simulation of rockfall activity in heterogeneous mountain forests, but point at the urgent need to improve the knowledge base on the interaction of understory and rockfall activity. Further work will focus on model validation against empirical rockfall data, and include reduced tree vitality due to damage from boulder collisions as well as the explicit consideration of downed dead wood.

  17. Modified Iterated perturbation theory in the strong coupling regime and its application to the 3d FCC lattice

    NASA Astrophysics Data System (ADS)

    Arsenault, Louis-François; Sémon, Patrick; Shastry, B. Sriram; Tremblay, A.-M. S.

    2012-02-01

    The Dynamical Mean-Field theory(DMFT) approach to the Hubbard model requires a method to solve the problem of a quantum impurity in a bath of non-interacting electrons. Iterated Perturbation Theory(IPT)[1] has proven its effectiveness as a solver in many cases of interest. Based on general principles and on comparisons with an essentially exact Continuous-Time Quantum Monte Carlo (CTQMC)[2], here we show that the standard implementation of IPT fails when the interaction is much larger than the bandwidth. We propose a slight modification to the IPT algorithm by requiring that double occupancy calculated with IPT gives the correct value. We call this method IPT-D. We show how this approximate impurity solver compares with respect to CTQMC. We consider a face centered cubic lattice(FCC) in 3d for different physical properties. We also use IPT-D to study the thermopower using two recently proposed approximations[3]S^* and SKelvin that do not require analytical continuation and show how thermopower is essentially the entropy per particle in the incoherent regime but not in the coherent one.[1]H.Kajueter et al. Phys. Rev. Lett. 77, 131(1996)[2]P. Werner, et al. Phys. Rev. Lett. 97, 076405(2006)[3]B.S. Sriram Shastry Rep. Prog. Phys. 72 016501(2009)

  18. Numerical simulation of suspended sediment concentration by 3D coupled wave-current model in the Oujiang River Estuary, China

    NASA Astrophysics Data System (ADS)

    Xu, Ting; You, Xue-yi

    2017-04-01

    A 3D sediment transport model based on the modified environmental fluid dynamics code (EFDC) and the nearshore waves simulation model (SWAN) is developed to study the change of suspended sediment concentration and bottom shear stress under the actions of pure current and wave-current. After being validated by the field measured data, the proposed sediment transport model is applied in the Oujiang River Estuary, China. The results show that the ratios of both bottom shear stress and suspended sediment concentration of pure current to those of wave-current show a gradually increase from shallow nearshore water to deep open sea. The results also show that the proportion of wave contributions on bottom shear stress and sediment concentration are above 60%, approximately 20-30% and less than 10% for the water depth of less than 5 m, 5-10 m and more than 20 m, respectively. For the waters among islands, the proportion of wave contribution to bottom shear stress and sediment concentration is reduced to 10-20% for -5 m water depth and this is more obvious for the waves of large amplitude. The bottom stress and suspended sediment concentration between islands are mainly controlled by tidal current, and the effect of wave is not significant.

  19. Regional seismic wavefield computation on a 3-D heterogeneous Earth model by means of coupled traveling wave synthesis

    USGS Publications Warehouse

    Pollitz, F.F.

    2002-01-01

    I present a new algorithm for calculating seismic wave propagation through a three-dimensional heterogeneous medium using the framework of mode coupling theory originally developed to perform very low frequency (f < ???0.01-0.05 Hz) seismic wavefield computation. It is a Greens function approach for multiple scattering within a defined volume and employs a truncated traveling wave basis set using the locked mode approximation. Interactions between incident and scattered wavefields are prescribed by mode coupling theory and account for the coupling among surface waves, body waves, and evanescent waves. The described algorithm is, in principle, applicable to global and regional wave propagation problems, but I focus on higher frequency (typically f ??????0.25 Hz) applications at regional and local distances where the locked mode approximation is best utilized and which involve wavefields strongly shaped by propagation through a highly heterogeneous crust. Synthetic examples are shown for P-SV-wave propagation through a semi-ellipsoidal basin and SH-wave propagation through a fault zone.

  20. Shapes of Red Blood Cells: Comparison of 3D Confocal Images with the Bilayer-Couple Model.

    PubMed

    Khairy, Khaled; Foo, Jijinn; Howard, Jonathon

    2010-09-01

    Cells and organelles are shaped by the chemical and physical forces that bend cell membranes. The human red blood cell (RBC) is a model system for studying how such forces determine cell morphology. It is thought that RBCs, which are typically biconcave discoids, take the shape that minimizes their membrane-bending energies, subject to the constraints of fixed area and volume. However, recently it has been hypothesized that shear elasticity arising from the membrane-associated cytoskeleton (MS) is necessary to account for shapes of real RBCs, especially ones with highly curved features such as echinocytes. In this work we tested this hypothesis by following RBC shape changes using spherical harmonic series expansions of theoretical cell surfaces and those estimated from 3D confocal microscopy images of live cells. We found (i) quantitative agreement between shapes obtained from the theoretical model including the MS and real cells, (ii) that weakening the MS, by using urea (which denatures spectrin), leads to the theoretically predicted gradual decrease in spicule number of echinocytes, (iii) that the theory predicts that the MS is essential for stabilizing the discocyte morphology against changes in lipid composition, and that without it, the shape would default to the elliptocyte (a biconcave ellipsoid), (iv) that we were able to induce RBCs to adopt the predicted elliptocyte morphology by treating healthy discocytes with urea. The latter observation is consistent with the known connection between the blood disease hereditary elliptocytosis and spectrin mutations that weaken the cell cortex. We conclude that while the discocyte, in absence of shear, is indeed a minimum energy shape, its stabilization in healthy RBCs requires the MS, and that elliptocytosis can be explained based on purely mechanical considerations.

  1. Incorporating 3-D Subsurface Hydrologic Processes within the Community Land Surface Model (CLM): Coupling PFLOTRAN and CLM

    NASA Astrophysics Data System (ADS)

    Bisht, G.; Mills, R. T.; Hoffman, F. M.; Thornton, P. E.; Lichtner, P. C.; Hammond, G. E.

    2011-12-01

    Numerous studies have shown a positive soil moisture-rainfall feedback through observational data, as well as, modeling studies. Spatial variability of topography, soils, and vegetation play a significant role in determining the response of land surface states (soil moisture) and fluxes (runoff, evapotranspirtiaon); but their explicit accounting within Land Surface Models (LSMs) is computa- tionally expensive. Additionally, anthropogenic climate change is altering the hydrologic cycle at global and regional scales. Characterizing the sensitivity of groundwater recharge is critical for understanding the effects of climate change on water resources. In order to explicitly represent lateral redistribution of soil moisture and unified treatment of the unsaturated-saturated zone in the subsurface within the CLM, we propose coupling PFLOTRAN and CLM. PFLOTRAN is a parallel multiphase-multicomponent subsurface reactive flow and transport code for modeling subsurface processes and has been devel- oped under a DOE SciDAC-2 project. PFLOTRAN is written in Fortran 90 using a modular, object-oriented approach. PFLOTRAN utilizes fully implicit time-stepping and is built on top of the Portable, Extensible Toolkit for Scientific Computation (PETSc). The PFLOTRAN model is capable of simulating fluid flow through porous media with fluid phases of air, water, and supercritical CO2. PFLOTRAN has been successfully employed on up to 131,072 cores on Jaguar, the massively parallel Cray XT4/XT5 at ORNL, for problems composed of up to 2 billion degrees of freedom. In this work, we will present a strategy of coupling the two models, CLM and PFLOTRAN, along with a few preliminary results obtained from the coupled model.

  2. 3-D radiative transfer in large-eddy simulations - experiences coupling the TenStream solver to the UCLA-LES

    NASA Astrophysics Data System (ADS)

    Jakub, Fabian; Mayer, Bernhard

    2016-04-01

    The recently developed 3-D TenStream radiative transfer solver was integrated into the University of California, Los Angeles large-eddy simulation (UCLA-LES) cloud-resolving model. This work documents the overall performance of the TenStream solver as well as the technical challenges of migrating from 1-D schemes to 3-D schemes. In particular the employed Monte Carlo spectral integration needed to be reexamined in conjunction with 3-D radiative transfer. Despite the fact that the spectral sampling has to be performed uniformly over the whole domain, we find that the Monte Carlo spectral integration remains valid. To understand the performance characteristics of the coupled TenStream solver, we conducted weak as well as strong-scaling experiments. In this context, we investigate two matrix preconditioner: geometric algebraic multigrid preconditioning (GAMG) and block Jacobi incomplete LU (ILU) factorization and find that algebraic multigrid preconditioning performs well for complex scenes and highly parallelized simulations. The TenStream solver is tested for up to 4096 cores and shows a parallel scaling efficiency of 80-90 % on various supercomputers. Compared to the widely employed 1-D delta-Eddington two-stream solver, the computational costs for the radiative transfer solver alone increases by a factor of 5-10.

  3. Universal effective coupling constant ratios of 3D scalar ϕ4 field theory and pseudo-ɛ expansion

    NASA Astrophysics Data System (ADS)

    Sokolov, A. I.; Nikitina, M. A.; Kudlis, A.

    2016-10-01

    The ratios R2k = g2k/gk - 14 of renormalized coupling constants g2k entering the small-field equation of state approach universal values R*2k at criticality. They are calculated for the three-dimensional λϕ4 field theory within the pseudo-ɛ expansion approach. Pseudo-ɛ expansions for R*6, R*8, R*10 are derived in the five-loop approximation, numerical estimates are obtained with a help of the Padé-Borel-Leroy resummation technique. Its use gives R*6 = 1.6488, the number which perfectly agrees with the most recent lattice result R*6 = 1.649. For the octic coupling the pseudo-ɛ expansion is less favorable numerically. Nevertheless the Padé-Borel-Leroy resummation leads to the estimate R*8 = 0.890 close to the values R*8 = 0.87, R*8 = 0.857 extracted from the lattice and field-theoretical calculations. The pseudo-ɛ expansion for R*10 turns out to have big and rapidly increasing coefficients. This makes correspondent estimates strongly dependent on the Borel-Leroy shift parameter b and prevents proper evaluation of R*10

  4. Superfluid plasmas: Multivelocity nonlinear hydrodynamics of superfluid solutions with charged condensates coupled electromagnetically

    SciTech Connect

    Holm, D.D.; Kupershmidt, B.A.

    1987-10-15

    Four levels of nonlinear hydrodynamic description are presented for a nondissipative multicondensate solution of superfluids with vorticity. First, the multivelocity superfluid (MVSF) theory is extended to the case of a multivelocity superfluid plasma (MVSP), in which some of the superfluid condensates (protons, say) are charged and coupled electromagnetically to an additional, normal, charged fluid (electrons). The resulting drag-current density is derived due to the electromagnetic coupling of the condensates with the normal fluids. For the case of one charged condensate, the MVSP equations simplify to what we call superfluid Hall magnetohydrodynamics (SHMHD) in the approximation that displacement current and electron inertia are negligible, and local charge neutrality is imposed. The contribution of the charged condensate to the Hall drift force is determined. In turn, neglecting the Hall effect in SHMHD gives the equations of superfluid magnetohydrodynamics (SMHD). Each set of equations (MVSF, MVSP, SHMHD, and SMHD) is shown to be Hamiltonian and to possess a Poisson bracket associated with the dual space of a corresponding semidirect-product Lie algebra with a generalized two-cocycle defined on it. Topological conservation laws (helicities) associated with the kernels of these Lie algebras are also discussed as well as those associated physically with generalized Kelvin theorems for conservation of superfluid circulation around closed loops moving with the normal fluid.

  5. Potential theory method for 3D crack and contact problems of multi-field coupled media: a survey.

    PubMed

    Chen, Wei-qiu; Ding, Hao-jiang

    2004-09-01

    This paper presents an overview of the recent progress of potential theory method in the analysis of mixed boundary value problems mainly stemming from three-dimensional crack or contact problems of multi-field coupled media. This method was used to derive a series of exact three dimensional solutions which should be of great theoretical significance because most of them usually cannot be derived by other methods such as the transform method and the trial-and-error method. Further, many solutions are obtained in terms of elementary functions that enable us to treat more complicated problems easily. It is pointed out here that the method is usually only applicable to media characterizing transverse isotropy, from which, however, the results for the isotropic case can be readily obtained.

  6. TART 2000: A Coupled Neutron-Photon, 3-D, Combinatorial Geometry, Time Dependent, Monte Carlo Transport Code

    SciTech Connect

    Cullen, D.E

    2000-11-22

    TART2000 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo radiation transport code. This code can run on any modern computer. It is a complete system to assist you with input Preparation, running Monte Carlo calculations, and analysis of output results. TART2000 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART2000 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART2000 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART2000 and its data files.

  7. TART98 a coupled neutron-photon 3-D, combinatorial geometry time dependent Monte Carlo Transport code

    SciTech Connect

    Cullen, D E

    1998-11-22

    TART98 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo radiation transport code. This code can run on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART98 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART98 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART98 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART98 and its data files.

  8. A 3D finite-strain-based constitutive model for shape memory alloys accounting for thermomechanical coupling and martensite reorientation

    NASA Astrophysics Data System (ADS)

    Wang, Jun; Moumni, Ziad; Zhang, Weihong; Xu, Yingjie; Zaki, Wael

    2017-06-01

    The paper presents a finite-strain constitutive model for shape memory alloys (SMAs) that accounts for thermomechanical coupling and martensite reorientation. The finite-strain formulation is based on a two-tier, multiplicative decomposition of the deformation gradient into thermal, elastic, and inelastic parts, where the inelastic deformation is further split into phase transformation and martensite reorientation components. A time-discrete formulation of the constitutive equations is proposed and a numerical integration algorithm is presented featuring proper symmetrization of the tensor variables and explicit formulation of the material and spatial tangent operators involved. The algorithm is used for finite element analysis of SMA components subjected to various loading conditions, including uniaxial, non-proportional, isothermal and adiabatic loading cases. The analysis is carried out using the FEA software Abaqus by means of a user-defined material subroutine, which is then utilized to simulate a SMA archwire undergoing large strains and rotations.

  9. Coastal fog prediction with a coupled model (1D+3D) system using the data from a 300 m met tower as input

    NASA Astrophysics Data System (ADS)

    Kim, W.; Yum, S. S.

    2015-12-01

    Visibility degradation due to fog can be very hazardous both to ground transportation and aviation traffic. However, prediction of fog using numerical models is difficult because fog formation is usually determined by local meteorological conditions that are hard to be measured and modeled with sufficient resolution. For this reason, there have been several attempts to build a coupled system of a fine resolution 1D model and a 3D mesoscale model with a usual grid resolution. In this study we uses the coupled system of the 1D PAFOG model and the 3D WRF model to simulate fogs formed at a southern coastal region of Korea, where the National Center for Intensive Observation of Severe Weather (NCIO) is located. Unique to NCIO is that it has a 300 m meteorological tower on which some basic meteorological variables (temperature, dew point temperature and winds) are measured at eleven different altitudes. In addition comprehensive cloud physics measurements are made with various remote sensing instruments such as cloud radar, wind profiler, microwave radiometer, micro rain radar. Several fog cases are identified during 2015 and will be simulated by the coupled system. The comprehensive set of measurement data from NCIO will be utilized as input to the model system and for evaluating the results. Particularly the data for initial and boundary conditions, which are tightly connected to the coupled model predictability, are extracted from the tower measurement. Furthermore, various sensitivity experiments will be done to enhance our understanding of the coastal fog formation mechanism. Detailed results will be discussed at the conference.

  10. 3D Two-way coupled TEHD analysis on the lubricating characteristics of thrust bearings in pump-turbine units by combining CFD and FEA

    NASA Astrophysics Data System (ADS)

    Zhai, Liming; Luo, Yongyao; Wang, Zhengwei; Liu, Xin

    2016-01-01

    The thermal elastic hydro dynamic (TEHD) lubrication analysis for the thrust bearing is usually conducted by combining Reynolds equation with finite element analysis (FEA). But it is still a problem to conduct the computation by combining computational fluid dynamics (CFD) and FEA which can simulate the TEHD more accurately. In this paper, by using both direct and separate coupled solutions together, steady TEHD lubrication considering the viscosity-temperature effect for a bidirectional thrust bearing in a pump-turbine unit is simulated combining a 3D CFD model for the oil film with a 3D FEA model for the pad and mirror plate. Cyclic symmetry condition is used in the oil film flow as more reasonable boundary conditions which avoids the oil temperature assumption at the leading and trailing edge. Deformations of the pad and mirror plate are predicted and discussed as well as the distributions of oil film thickness, pressure, temperature. The predicted temperature shows good agreement with measurements, while the pressure shows a reasonable distribution comparing with previous studies. Further analysis of the three-coupled-field reveals the reason of the high pressure and high temperature generated in the film. Finally, the influence of rotational speed of the mirror plate on the lubrication characteristics is illustrated which shows the thrust load should be balanced against the oil film temperature and pressure in optimized designs. This research proposes a thrust bearing computation method by combining CFD and FEA which can do the TEHD analysis more accurately.

  11. Incorporating a Semi-Empirical Point Source Discharge Mixing Model into a 3D Nested-Grid Hydrodynamic Model to Examine Residence Time Scales on the Shallow Shelf of a Large Lake

    NASA Astrophysics Data System (ADS)

    Cowen, E. A.; King, A. T.

    2016-12-01

    Cayuga Lake is long (65km), narrow (3km), and deep (130m max). A shallow shelf (<6m deep) extends 2km north from the southern end. Concern about phosphorous and sediment loading has initiated an effort to understand the physical processes controlling water residence time on the shelf. Of particular interest are the influence of a deep lake cooling facility that discharges onto the shelf and internal waves impacting the shelf from the lake basin. To assess the impact of various physical processes on residence time we have employed the three-dimensional hydrodynamic model Si3D, forcing a fine-grid (25m x 25m x 0.1m) simulation of the shelf with output from a coarse-grid (125m x 125m x 0.1m) simulation of the entire lake, and developing an empirically-based near-field point source mixing model for the cooling facility outfall. Si3D solves the continuity equation, the Reynolds-averaged Navier-Stokes equations (employing the hydrostatic assumption for pressure and an eddy viscosity closure for Reynolds stresses), the transport equation for temperature (employing an eddy diffusivity closure), and an equation of state. Vertical eddy viscosity/diffusivity are represented using level 2.5 Mellor-Yamada. Horizontal eddy viscosity/diffusivity are typically set to constants, but we use these to enforce the correct near field dynamics of the cooling facility discharge. The cooling facility outfall is a 23m-long array of nozzles pointed north and discharging with sufficient velocity to induce significant back entrainment (order 10x the 1.5m3/s discharge) and rapid lateral diffusion of momentum and scalars for hundreds of meters downstream. Once the negatively buoyant effluent has lost sufficient momentum, it plunges and spreads under the influence of both momentum and gravity. In the near field, we specify horizontal eddy viscosity/diffusivity within Si3D such that evolution of momentum and scalar fields match semi-empirical predictions for a jet in shallow water with friction

  12. Coupling of a 3-D vortex particle-mesh method with a finite volume near-wall solver

    NASA Astrophysics Data System (ADS)

    Marichal, Y.; Lonfils, T.; Duponcheel, M.; Chatelain, P.; Winckelmans, G.

    2011-11-01

    This coupling aims at improving the computational efficiency of high Reynolds number bluff body flow simulations by using two complementary methods and exploiting their respective advantages in distinct parts of the domain. Vortex particle methods are particularly well suited for free vortical flows such as wakes or jets (the computational domain -with non zero vorticity- is then compact and dispersion errors are negligible). Finite volume methods, however, can handle boundary layers much more easily due to anisotropic mesh refinement. In the present approach, the vortex method is used in the whole domain (overlapping domain technique) but its solution is highly underresolved in the vicinity of the wall. It thus has to be corrected by the near-wall finite volume solution at each time step. Conversely, the vortex method provides the outer boundary conditions for the near-wall solver. A parallel multi-resolution vortex particle-mesh approach is used here along with an Immersed Boundary method in order to take the walls into account. The near-wall flow is solved by OpenFOAM® using the PISO algorithm. We validate the methodology on the flow past a sphere at a moderate Reynolds number. F.R.S. - FNRS Research Fellow.

  13. In vivo 3D morphology of astrocyte–vasculature interactions in the somatosensory cortex: implications for neurovascular coupling

    PubMed Central

    McCaslin, Addason F H; Chen, Brenda R; Radosevich, Andrew J; Cauli, Bruno; Hillman, Elizabeth M C

    2011-01-01

    Astrocytes are increasingly believed to play an important role in neurovascular coupling. Recent in vivo studies have shown that intracellular calcium levels in astrocytes correlate with reactivity in adjacent diving arterioles. However, the hemodynamic response to stimulation involves a complex orchestration of vessel dilations and constrictions that spread rapidly over wide distances. In this work, we study the three-dimensional cytoarchitecture of astrocytes and their interrelations with blood vessels down through layer IV of the mouse somatosensory cortex using in vivo two-photon microscopy. Vessels and astrocytes were visualized through intravenous dextran-conjugated fluorescein and cortically applied sulforhodamine 101 (SR101), respectively. In addition to exploring astrocyte density, vascular proximity, and microvascular density, we found that sheathing of subpial vessels by astrocyte processes was continuous along all capillaries, arterioles, and veins, comprising a highly interconnected pathway through which signals could feasibly be relayed over long distances via gap junctions. An inner SR101-positive sheath noted along pial and diving arterioles was determined to be nonastrocytic, and appears to represent selective SR101 staining of arterial endothelial cells. Our findings underscore the intimate relationship between astrocytes and all cortical blood vessels, and suggest that astrocytes could influence neurovascular regulation at a range of sites, including the capillary bed and pial arterioles. PMID:21139630

  14. Fully-coupled fluid-structure interaction simulation of the aortic and mitral valves in a realistic 3D left ventricle model.

    PubMed

    Mao, Wenbin; Caballero, Andrés; McKay, Raymond; Primiano, Charles; Sun, Wei

    2017-01-01

    In this study, we present a fully-coupled fluid-structure interaction (FSI) framework that combines smoothed particle hydrodynamics (SPH) and nonlinear finite element (FE) method to investigate the coupled aortic and mitral valves structural response and the bulk intraventricular hemodynamics in a realistic left ventricle (LV) model during the entire cardiac cycle. The FSI model incorporates valve structures that consider native asymmetric leaflet geometries, anisotropic hyperelastic material models and human material properties. Comparison of FSI results with subject-specific echocardiography data demonstrates that the SPH-FE approach is able to quantitatively predict the opening and closing times of the valves, the mitral leaflet opening and closing angles, and the large-scale intraventricular flow phenomena with a reasonable agreement. Moreover, comparison of FSI results with a LV model without valves reveals substantial differences in the flow field. Peak systolic velocities obtained from the FSI model and the LV model without valves are 2.56 m/s and 1.16 m/s, respectively, compared to the Doppler echo data of 2.17 m/s. The proposed SPH-FE FSI framework represents a further step towards modeling patient-specific coupled LV-valve dynamics, and has the potential to improve our understanding of cardiovascular physiology and to support professionals in clinical decision-making.

  15. A Coupled fcGCM-GCE Modeling System: A 3D Cloud Resolving Model and a Regional Scale Model

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2005-01-01

    Recent GEWEX Cloud System Study (GCSS) model comparison projects have indicated that cloud-resolving models (CRMs) agree with observations better than traditional single-column models in simulating various types of clouds and cloud systems from different geographic locations. Current and future NASA satellite programs can provide cloud, precipitation, aerosol and other data at very fine spatial and temporal scales. It requires a coupled global circulation model (GCM) and cloud-scale model (termed a super-parameterization or multi-scale modeling framework, MMF) to use these satellite data to improve the understanding of the physical processes that are responsible for the variation in global and regional climate and hydrological systems. The use of a GCM will enable global coverage, and the use of a CRM will allow for better and ore sophisticated physical parameterization. NASA satellite and field campaign cloud related datasets can provide initial conditions as well as validation for both the MMF and CRMs. The Goddard MMF is based on the 2D Goddard Cumulus Ensemble (GCE) model and the Goddard finite volume general circulation model (fvGCM), and it has started production runs with two years results (1998 and 1999). Also, at Goddard, we have implemented several Goddard microphysical schemes (21CE, several 31CE), Goddard radiation (including explicity calculated cloud optical properties), and Goddard Land Information (LIS, that includes the CLM and NOAH land surface models) into a next generation regional scale model, WRF. In this talk, I will present: (1) A Brief review on GCE model and its applications on precipitation processes (microphysical and land processes), (2) The Goddard MMF and the major difference between two existing MMFs (CSU MMF and Goddard MMF), and preliminary results (the comparison with traditional GCMs), (3) A discussion on the Goddard WRF version (its developments and applications), and (4) The characteristics of the four-dimensional cloud data

  16. A Coupled fcGCM-GCE Modeling System: A 3D Cloud Resolving Model and a Regional Scale Model

    NASA Technical Reports Server (NTRS)

    Tao, Wei-Kuo

    2005-01-01

    Recent GEWEX Cloud System Study (GCSS) model comparison projects have indicated that cloud-resolving models (CRMs) agree with observations better than traditional single-column models in simulating various types of clouds and cloud systems from different geographic locations. Current and future NASA satellite programs can provide cloud, precipitation, aerosol and other data at very fine spatial and temporal scales. It requires a coupled global circulation model (GCM) and cloud-scale model (termed a super-parameterization or multi-scale modeling framework, MMF) to use these satellite data to improve the understanding of the physical processes that are responsible for the variation in global and regional climate and hydrological systems. The use of a GCM will enable global coverage, and the use of a CRM will allow for better and ore sophisticated physical parameterization. NASA satellite and field campaign cloud related datasets can provide initial conditions as well as validation for both the MMF and CRMs. The Goddard MMF is based on the 2D Goddard Cumulus Ensemble (GCE) model and the Goddard finite volume general circulation model (fvGCM), and it has started production runs with two years results (1998 and 1999). Also, at Goddard, we have implemented several Goddard microphysical schemes (21CE, several 31CE), Goddard radiation (including explicity calculated cloud optical properties), and Goddard Land Information (LIS, that includes the CLM and NOAH land surface models) into a next generation regional scale model, WRF. In this talk, I will present: (1) A Brief review on GCE model and its applications on precipitation processes (microphysical and land processes), (2) The Goddard MMF and the major difference between two existing MMFs (CSU MMF and Goddard MMF), and preliminary results (the comparison with traditional GCMs), (3) A discussion on the Goddard WRF version (its developments and applications), and (4) The characteristics of the four-dimensional cloud data

  17. Coupling GB-SAR and visual photography for 3D modelling of an Alpine glacier surface kinematics

    NASA Astrophysics Data System (ADS)

    Dematteis, Niccolò; Luzi, Guido; Giordan, Daniele; Zucca, Francesco; Allasia, Paolo

    2017-04-01

    We present the 3-dimensional modelling of a glacier kinematics, obtained by coupling the results of two monitoring campaigns, simultaneously collecting data from two different and independent remote sensing devices, focused on the surface deformation of the Planpincieux glacier, on the Italian side of the Mont Blanc massif. The analysed period lasted 25 days and occurred in correspondence of the beginning of the Alpine cold season. The unstable weather conditions, affecting both the monitored surfaces and the signal propagation, demanded an accurate understanding of the atmospheric effect and the development of a specific correction procedure for radar data. The considered devices are a low-cost optical photography station (OPS) and a ground-based synthetic aperture radar (GB-SAR). The OPS is placed frontally to the glacier surface and measures the daily motion components orthogonal to the line of sight (LOS). The processing is performed through spatial cross-correlation between consecutive images, acquired at the same hours to limit shadow effects. The images are orthorectified on a 1 m-resolution digital surface model (DSM) of the glacier and a pixel-to-metric conversion is performed. The GB-SAR acquires data every 16 minutes. The GB-SAR location is decided aiming at maximising the parallel condition to the LOS and the estimated direction of the main flow. The main processing steps include i) a coherence-driven pixel-selection criterion to identify glacier areas, ii) 2D unwrapping algorithm, iii) atmosphere phase screen (APS) filtering with a newly 2D polynomial model, function of the elevation. The radar maps are also georeferenced on the DSM. Finally, from the 3 different components of the glacier surface motion it is possible to reconstruct the actual deformation vector. The results are mapped on the DSM. The proposed method allows to determine the evolution of the 3-dimensional kinematics of the observed surface; it can be applied in general to the

  18. An efficient formulation of the coupled finite element-integral equation technique for solving large 3D scattering problems

    NASA Technical Reports Server (NTRS)

    Cwik, T.; Jamnejad, V.; Zuffada, C.

    1993-01-01

    It is often desirable to calculate the electromagnetic fields inside and about a complicated system of scattering bodies, as well as in their far-field region. The finite element method (FE) is well suited to solving the interior problem, but the domain has to be limited to a manageable size. At the truncation of the FE mesh one can either impose approximate (absorbing) boundary conditions or set up an integral equation (IE) for the fields scattered from the bodies. The latter approach is preferable since it results in higher accuracy. Hence, the two techniques can be successfully combined by introducing a surface that encloses the scatterers, applying a FE model to the inner volume and setting up an IE for the tangential fields components on the surface. Here the continuity of the tangential fields is used bo obtain a consistent solution. A few coupled FE-IE methods have recently appeared in the literature. The approach presented here has the advantage of using edge-based finite elements, a type of finite elements with degrees of freedom associated with edges of the mesh. Because of their properties, they are better suited than the conventional node based elements to represent electromagnetic fields, particularly when inhomogeneous regions are modeled, since the node based elements impose an unnatural continuity of all field components across boundaries of mesh elements. Additionally, our approach is well suited to handle large size problems and lends itself to code parallelization. We will discuss the salient features that make our approach very efficient from the standpoint of numerical computation, and the fields and RCS of a few objects are illustrated as examples.

  19. Medium term modelling of coupled hydrodynamics, turbulence and sediment pathways in a region of freshwater influence.

    NASA Astrophysics Data System (ADS)

    Amoudry, Laurent; Brown, Jenny; Souza, Alex; Norman, Danielle; Olsen, Karine

    2014-05-01

    Liverpool Bay, in the northwest of the UK, is a shallow, hypertidal region of freshwater influence. In this region, baroclinic processes significantly affect the residual circulation, which in turn influences the long term transport of sediment. A nested modelling system is implemented to simulate the coupled hydro and sediment dynamics in the bay. We use the Proudman Oceanographic Laboratory Coastal Ocean Modelling System (POLCOMS), which is based on a three-dimensional baroclinic numerical model formulated in spherical polar terrain-following coordinates. The hydrodynamic model solves the three-dimensional, hydrostatic, Boussinesq equations of motion separated into depth-varying and depth-independent parts to allow time splitting between barotropic and baroclinic components. This model is coupled to the General Ocean Turbulence Model (GOTM), to the WAve Model (WAM), and includes state-of-the-art Eulerian and Lagrangian sediment transport models. We implement POLCOMS to Liverpool Bay at a horizontal resolution of approximately 180 m. The bathymetry consists of digitized hydrographic charts combined with LIDAR and multibeam data. Three-dimensional baroclinic effects, river inputs, surface heating and offshore density structure are all considered. Liverpool Bay is subjected to a spring tidal range in excess of 10 m and thus intertidal areas are significant. Wetting and drying algorithms are therefore also implemented. A nesting approach is employed to prescribe offshore boundary conditions for elevations, currents, temperature and salinity. Boundary values are obtained from numerical simulations for the entire Irish and are then used to force the three-dimensional hydrodynamics in the Liverpool Bay domain. Atmospheric forcing consists of hourly wind velocity and atmospheric pressure, and three-hourly cloud cover, humidity and air temperature. We focus here on numerical simulations for a full year, 2008, which is considered to be a typical year for atmospheric

  20. Use of RELAP5-3D for Dynamic Analysis of a Closed-Loop Brayton Cycle Coupled To a Nuclear Reactor

    NASA Astrophysics Data System (ADS)

    McCann, Larry D.

    2007-01-01

    This paper describes results of a dynamic system model for a pair of closed Brayton-cycle (CBC) loops running in parallel that are connected to a nuclear gas reactor. The model assumes direct coupling between the reactor and the Brayton-cycle loops. The RELAP5-3D (version 2.4.1) computer program was used to perform the analysis. Few reactors have ever been coupled to closed Brayton-cycle systems. As such their behavior under dynamically varying loads, startup and shut down conditions, and requirements for safe and autonomous operation are largely unknown. The model described in this paper represents the reactor, turbine, compressor, recuperator, heat rejection system and alternator. The initial results of the model indicate stable operation of the reactor-driven Brayton-cycle system. However, for analysts with mostly pressurized water reactor experience, the Brayton cycle loops coupled to a gas-cooled reactor also indicate some counter-intuitive behavior for the complete coupled system. This model has provided crucial information in evaluating the reactor design and would have been further developed for use in developing procedures for safe start up, shut down, safe-standby, and other autonomous operating modes had the plant development cycle been completed.

  1. Use of RELAP5-3D for Dynamic Analysis of a Closed-Loop Brayton Cycle Coupled To a Nuclear Reactor

    SciTech Connect

    McCann, Larry D.

    2007-01-30

    This paper describes results of a dynamic system model for a pair of closed Brayton-cycle (CBC) loops running in parallel that are connected to a nuclear gas reactor. The model assumes direct coupling between the reactor and the Brayton-cycle loops. The RELAP5-3D (version 2.4.1) computer program was used to perform the analysis. Few reactors have ever been coupled to closed Brayton-cycle systems. As such their behavior under dynamically varying loads, startup and shut down conditions, and requirements for safe and autonomous operation are largely unknown. The model described in this paper represents the reactor, turbine, compressor, recuperator, heat rejection system and alternator. The initial results of the model indicate stable operation of the reactor-driven Brayton-cycle system. However, for analysts with mostly pressurized water reactor experience, the Brayton cycle loops coupled to a gas-cooled reactor also indicate some counter-intuitive behavior for the complete coupled system. This model has provided crucial information in evaluating the reactor design and would have been further developed for use in developing procedures for safe start up, shut down, safe-standby, and other autonomous operating modes had the plant development cycle been completed.

  2. Space Weather at Mars: 3-D studies using one-way coupling between the Multi-fluid MHD, M-GITM and M-AMPS models

    NASA Astrophysics Data System (ADS)

    Dong, Chuanfei

    This dissertation presents numerical simulation results of the solar wind interaction with the Martian upper atmosphere by using three comprehensive 3-D models: the Mars Global Ionosphere Thermosphere Model (M-GITM), the Mars exosphere Monte Carlo model Adaptive Mesh Particle Simulator (M-AMPS), and the BATS-R-US Mars multi-fluid MHD (MF-MHD) model. The coupled framework has the potential to provide improved predictions for ion escape rates for comparison with future data to be returned by the MAVEN mission (2014-2016) and thereby improve our understanding of present day escape processes. Estimates of ion escape rates over Mars history must start from properly validated models that can be extrapolated into the past. This thesis aims to build a model library for the NASA Mars Atmosphere and Volatile EvolutioN (MAVEN) mission, which will thus enhance the science return from the MAVEN mission. In this thesis, we aim to address the following four main scientific questions by adopting the one-way coupled framework developed here: (1) What are the Martian ion escape rates at the current epoch and ancient times? (2) What controls the ion escape processes at the current epoch? How are the ion escape variations connected to the solar cycle, crustal field orientation and seasonal variations? (3) How do the variable 3-D cold neutral thermosphere and hot oxygen corona affect the solar wind-Mars interaction? (4) How does the Martian atmosphere respond to extreme variations (e.g., ICMEs) in the solar wind and its interplanetary environment? These questions are closely related to the primary scientific goals of NASA's MAVEN mission and European Space Agency's Mars Express (MEX) mission. We reasonably answer all these four questions at the end of this thesis by employing the one-way coupled framework and comparing the simulation results with both MEX and MAVEN observational data.

  3. Effective dynamical coupling of hydrodynamics and transport for heavy-ion collisions

    NASA Astrophysics Data System (ADS)

    Oliinychenko, Dmytro; Petersen, Hannah

    2017-04-01

    Present hydrodynamics-based simulations of heavy-ion collisions neglect the feedback from the frozen-out particles flying back into the hydrodynamical region. This causes an artefact called “negative Cooper-Frye contributions”, which is negligible for high collision energies, but becomes significant for lower RHIC BES energies and for event-by-event simulations. To avoid negative Cooper-Frye contributions, while still preserving hydrodynamical behavior, we propose a pure hadronic transport approach with forced thermalization in the regions of high energy density. It is demonstrated that this approach exhibits enhancement of strangeness and mean transverse momenta compared to conventional transport - an effect typical for hydrodynamical approaches.

  4. Improved Large-Scale Inundation Modelling by 1D-2D Coupling and Consideration of Hydrologic and Hydrodynamic Processes - a Case Study in the Amazon

    NASA Astrophysics Data System (ADS)

    Hoch, J. M.; Bierkens, M. F.; Van Beek, R.; Winsemius, H.; Haag, A.

    2015-12-01

    Understanding the dynamics of fluvial floods is paramount to accurate flood hazard and risk modeling. Currently, economic losses due to flooding constitute about one third of all damage resulting from natural hazards. Given future projections of climate change, the anticipated increase in the World's population and the associated implications, sound knowledge of flood hazard and related risk is crucial. Fluvial floods are cross-border phenomena that need to be addressed accordingly. Yet, only few studies model floods at the large-scale which is preferable to tiling the output of small-scale models. Most models cannot realistically model flood wave propagation due to a lack of either detailed channel and floodplain geometry or the absence of hydrologic processes. This study aims to develop a large-scale modeling tool that accounts for both hydrologic and hydrodynamic processes, to find and understand possible sources of errors and improvements and to assess how the added hydrodynamics affect flood wave propagation. Flood wave propagation is simulated by DELFT3D-FM (FM), a hydrodynamic model using a flexible mesh to schematize the study area. It is coupled to PCR-GLOBWB (PCR), a macro-scale hydrological model, that has its own simpler 1D routing scheme (DynRout) which has already been used for global inundation modeling and flood risk assessments (GLOFRIS; Winsemius et al., 2013). A number of model set-ups are compared and benchmarked for the simulation period 1986-1996: (0) PCR with DynRout; (1) using a FM 2D flexible mesh forced with PCR output and (2) as in (1) but discriminating between 1D channels and 2D floodplains, and, for comparison, (3) and (4) the same set-ups as (1) and (2) but forced with observed GRDC discharge values. Outputs are subsequently validated against observed GRDC data at Óbidos and flood extent maps from the Dartmouth Flood Observatory. The present research constitutes a first step into a globally applicable approach to fully couple

  5. Planetesimal Growth through the Accretion of Small Solids: Hydrodynamics Simulations with Gas-Particle Coupling

    NASA Astrophysics Data System (ADS)

    Hughes, Anna; Boley, Aaron C.

    2016-10-01

    The growth and migration of planetesimals in young protoplanetary disks are fundamental to the planet formation process. A number of mechanisms seemingly inhibit small grains from growing to sizes much larger than a centimeter, limiting planetesimal growth. In spite of this, the meteoritic record, abundance of exoplanets, and the lifetimes of disks considered altogether indicate that growth must be rapid and common. If a small number of 100-km sized planetesimals do form by some method such as the streaming instability, then gas drag effects could enable those objects to accrete small solids efficiently. In particular, accretion rates for such planetesimals could be higher or lower than rates based on the geometric cross-section and gravitational focusing alone. The local gas conditions and properties of accreting bodies select a locally optimal accretion size for the pebbles. As planetesimals accrete pebbles, they feel an additional angular momentum exchange - causing the planetesimal to slowly drift inward, which becomes significant at short orbital periods. We present self-consistent hydrodynamic simulations with direct particle integration and gas-drag coupling to evaluate the rate of planetesimal growth due to pebble accretion. We explore a range of particle sizes, planetesimal properties, and disk conditions using wind tunnel simulations. These results are followed by numerical analysis of planetesimal drift rates at a variety of stellar distances.

  6. Coupled hydrodynamic instability growth on oblique interfaces in a heavy to light configuration

    NASA Astrophysics Data System (ADS)

    Rasmus, A. M.; Flippo, K. A.; di Stefano, C. A.; Doss, F. W.; Merritt, E. C.; Cardenas, T.; Schmidt, D. W.; Kline, J. L.; Kuranz, C. C.

    2016-10-01

    Hydrodynamic instabilities play an important role in the evolution of inertial confinement fusion and astrophysical phenomena. Three of the Omega-EP long pulse beams (10 ns square pulse, 14 kJ total energy, 1.1 mm spot size) drive a supported shock across a heavy-to-light, oblique, interface. Simple, single-mode, and more complex, double and multi-mode, initial conditions seed coupled Richtmeyer-Meshkov (RM), Rayleigh-Taylor (RT), and Kelvin-Helmholtz (KH) growth. The obliqueness of the interface is varied to alter the relative importance of KH to RM and RT. The Spherical Crystal Imager is used to take high resolution x-ray radiographs of the interface as it evolves. The results of single and double-mode experiments along with simulations using the multi-physics hydro-code RAGE will be presented. This work is funded by the NNSA-DS and SC-OFES Joint Program in High-Energy-Density Laboratory Plasmas, Grant Number DE-NA0002956. This work performed under the auspices of the U.S. Department of Energy by LANL under contract DE-AC52-06NA25396. This material is partially supported by DOE Office of Science Graduate Student Research (SCGSR) program.

  7. Biaxial loading of arterial tissues with 3D in situ observations of adventitia fibrous microstructure: A method coupling multi-photon confocal microscopy and bulge inflation test.

    PubMed

    Cavinato, Cristina; Helfenstein-Didier, Clementine; Olivier, Thomas; du Roscoat, Sabine Rolland; Laroche, Norbert; Badel, Pierre

    2017-10-01

    Disorders in the wall microstructure underlie all forms of vascular disease, such as the aortic aneurysm, the rupture of which is necessarily triggered at the microscopic level. In this context, we developed an original experimental approach, coupling a bulge inflation test to multiphoton confocal microscopy, for visualizing the 3D micro-structure of porcine, human non-aneurysmal and aneurysmal aortic adventitial collagen under increasing pressurization. The experiment complexity on such tissues led to deeply address the acquisition major hurdles. The important innovative features of the methodology are presented, especially regarding region-of-interest tracking, definition of a stabilization period prior to imaging and correction of z-motion, z being the objective's axis. Such corrections ensured consistent 3D qualitative and quantitative analyses without z-motion. Qualitative analyses of the stable 3D images showed dense undulated collagen fiber bundles in the unloaded state which tended to progressive straightening and separation into a network of thinner bundles at high pressures. Quantitative analyses were made using a combination of weighted 2D structure tensors and fitting of 4 independent Gaussian functions to measure parameters related to straightening and orientation of the fibers. They denoted 3 principal fibers directions, approximately 45°, 135° and 90° with respect to the circumferential axis in the circumferential-axial plane without any evident reorientation of the fibers under pressurization. Results also showed that fibers at zero-pressure state were straighter and less dispersed in orientation for human samples - especially aneurysms - than for pigs. Progressive straightening and decrease in dispersion were quantified during the inflation. These findings provide further insight into the micro-architectural changes within the arterial wall. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. 3-D Modeling of Directional Solidification of a Non-Dilute Alloy with Temperature and Concentration Fields Coupling via Materials Properties Dependence and via Double Diffusive Convection

    NASA Technical Reports Server (NTRS)

    Bune, Andris V.; Gillies, Donald C.; Lehoczky, Sandor L.

    1998-01-01

    Numerical simulation of the HgCdTe growth by the vertical Bridgman method was performed using FIDAP finite element code. Double-diffusive melt convection is analyzed, as the primary factor at controls inhomogeneity of the solidified material. Temperature and concentration fields in the model are also coupled via material properties, such as thermal and solutal expansion coefficients with the dependence on both temperature and concentration, and melting temperature evaluation from pseudobinary CdTe-HgTe phase diagram. Experimental measurements were used to obtain temperature boundary conditions. Parametric study of the melt convection dependence on the gravity conditions was undertaken. It was found, that the maximum convection velocity in the melt can be reduced under certain conditions. Optimal conditions to obtain a near flat solidified interface are discussed. The predicted interface shape is in agreement with one obtained experimentally by quenching. The results of 3-D calculations are compared with previous 2- D findings. A video film featuring 3-D melt convection will be presented.

  9. 3-D Modeling of Directional Solidification of a Non-Dilute Alloy with Temperature and Concentration Fields Coupling via Materials Properties Dependence and via Double Diffusive Convection

    NASA Technical Reports Server (NTRS)

    Bune, Andris V.; Gillies, Donald C.; Lehoczky, Sandor L.

    1998-01-01

    Numerical simulation of the HgCdTe growth by the vertical Bridgman method was performed using FIDAP finite element code. Double-diffusive melt convection is analyzed, as the primary factor at controls inhomogeneity of the solidified material. Temperature and concentration fields in the model are also coupled via material properties, such as thermal and solutal expansion coefficients with the dependence on both temperature and concentration, and melting temperature evaluation from pseudobinary CdTe-HgTe phase diagram. Experimental measurements were used to obtain temperature boundary conditions. Parametric study of the melt convection dependence on the gravity conditions was undertaken. It was found, that the maximum convection velocity in the melt can be reduced under certain conditions. Optimal conditions to obtain a near flat solidified interface are discussed. The predicted interface shape is in agreement with one obtained experimentally by quenching. The results of 3-D calculations are compared with previous 2- D findings. A video film featuring 3-D melt convection will be presented.

  10. 6-Substituted Pyrrolo[2,3-d]pyrimidine Thienoyl Regioisomers as Targeted Antifolates for Folate Receptor α and the Proton-Coupled Folate Transporter in Human Tumors

    PubMed Central

    Wang, Lei; Wallace, Adrianne; Raghavan, Sudhir; Deis, Siobhan M.; Wilson, Mike R.; Yang, Si; Polin, Lisa; White, Kathryn; Kushner, Juiwanna; Orr, Steven; George, Christina; O’Connor, Carrie; Hou, Zhanjun; Mitchell-Ryan, Shermaine; Dann, Charles E.; Matherly, Larry H.; Gangjee, Aleem

    2016-01-01

    2-Amino-4-oxo-6-substituted-pyrrolo[2,3-d]-pyrimidine antifolate thiophene regioisomers of AGF94 (4) with a thienoyl side chain and three-carbon bridge lengths [AGF150 (5) and AGF154 (7)] were synthesized as potential antitumor agents. These analogues inhibited proliferation of Chinese hamster ovary (CHO) sublines expressing folate receptors (FRs) α or β (IC50s < 1 nM) or the proton-coupled folate transporter (PCFT) (IC50 < 7 nM). Compounds 5 and 7 inhibited KB, IGROV1, and SKOV3 human tumor cells at subnanomolar concentrations, reflecting both FRα and PCFT uptake. AGF152 (6) and AGF163 (8), 2,4-diamino-5-substituted-furo[2,3-d]pyrimidine thiophene regioisomers, also inhibited growth of FR-expressing CHO and KB cells. All four analogues inhibited glycinamide ribonucleotide formyltransferase (GARFTase). Crystal structures of human GARFTase complexed with 5 and 7 were reported. In severe combined immunodeficient mice bearing SKOV3 tumors, 7 was efficacious. The selectivity of these compounds for PCFT and for FRα and β over the ubiquitously expressed reduced folate carrier is a paradigm for selective tumor targeting. PMID:26317331

  11. Coupled 3D time-dependent wave-packet approach in hyperspherical coordinates: application to the adiabatic singlet-state(1(1)A') D(+) + H2 reaction.

    PubMed

    Sahoo, Tapas; Ghosh, Sandip; Adhikari, Satrajit; Sharma, Rahul; Varandas, António J C

    2014-07-03

    We explore a coupled three-dimensional (3D) time-dependent wave packet formalism in hyperspherical coordinates for a 4D reactive scattering problem on the lowest adiabatic singlet surface (1(1)A') of the D(+) + H2 reaction. The coupling among the wavepackets arises through quantization of the rotation matrix, which represents the orientation of the three particles in space. The required transformation from Jacobi to hyperspherical coordinates and vice versa during initialization and projection of the wave packet on the asymptotic state(s), and the coupled equations of motion, are briefly discussed. With the long-range potential known to contribute significantly on the D(+) + H2 system, we demonstrate the workability of our approach, where the convergence profiles of the reaction probability for the reactive noncharge transfer (RNCT) process [D(+) + H2(v=0, j=0,1) → HD(v',j') + H(+)] are shown for three different collisional energies (1.7, 2.1, and 2.5 eV) with respect to the helicity (K) and total angular momentum (J) quantum numbers. The calculated reactive cross-section is presented as a function of the collision energy for two different initial states of the diatom (v = 0, j = 0, 1).

  12. Characterization of flow pattern transitions for horizontal liquid-liquid pipe flows by using multi-scale distribution entropy in coupled 3D phase space

    NASA Astrophysics Data System (ADS)

    Zhai, Lu-Sheng; Zong, Yan-Bo; Wang, Hong-Mei; Yan, Cong; Gao, Zhong-Ke; Jin, Ning-De

    2017-03-01

    Horizontal oil-water two-phase flows often exist in many industrial processes. Uncovering the dynamic mechanism of the flow pattern transition is of great significance for modeling the flow parameters. In this study we propose a method called multi-scale distribution entropy (MSDE) in a coupled 3D phase space, and use it to characterize the flow pattern transitions in horizontal oil-water two-phase flows. Firstly, the proposed MSDE is validated with Lorenz system and ARFIMA processes. Interestingly, it is found that the MSDE is dramatically associated with the cross-correlations of the coupled time series. Then, through conducting the experiment of horizontal oil-water two-phase flows, the upstream and downstream flow information is collected using a conductance cross-correlation velocity probe. The coupled cross-correlated signals are investigated using the MSDE method, and the results indicate that the MSDE is an effective tool uncovering the complex dynamic behaviors of flow pattern transitions.

  13. Simulation of short-term pressure regulation during the tilt test in a coupled 3D-0D closed-loop model of the circulation.

    PubMed

    Lau, Kevin D; Figueroa, C Alberto

    2015-08-01

    Short-term fluctuations in arterial pressures arising from normal physiological function are buffered by a negative feedback system known as the arterial baroreflex. Initiated by altered biomechanical stretch in the vessel wall, the baroreflex coordinates a systemic response that alters heart rate, cardiac contractility and peripheral vessel vasoconstriction. In this work, a coupled 3D-0D formulation for the short-term pressure regulation of the systemic circulation is presented. Including the baroreflex feedback mechanisms, a patient-specific model of the large arteries is subjected to a simulated head up tilt test. Comparative simulations with and without baroreflex control highlight the critical role that the baroreflex has in regulating variations in pressures within the systemic circulation.

  14. Lagrangian advection scheme with shape matrix (LASM) v0.2: interparcel mixing, physics-dynamics coupling and 3-D extension

    NASA Astrophysics Data System (ADS)

    Dong, L.; Wang, B.; Liu, L.; Huang, Y.

    2015-08-01

    The interparcel mixing algorithm in the Lagrangian advection scheme with shape matrix (LASM) is updated to make the scheme more robust. The linear degeneration criterion is replaced by the maximum deviation of the skeleton points so that the new algorithm is more effective in controlling the shape of parcels, which is vital for long time simulation. LASM is inherently shape-preserving without any complicated filter or limiter, and it is linear. This fact contributes to the ability to preserve the sum of multiple tracers exactly on the parcels in LASM. A newly proposed terminator "toy"-chemistry test is used to test LASM, which shows that LASM can preserve the weighted sum of two reactive species precisely. The physics-dynamics coupling (i.e., tendency evaluation type) is also discussed. A flow generated by a WRF large-eddy simulation is also used to test the 3-D extension of LASM.

  15. Impact of air-sea coupling on the simulation of tropical cyclones in the North Indian Ocean using a simple 3-D ocean model coupled to ARW

    NASA Astrophysics Data System (ADS)

    Srinivas, C. V.; Mohan, Greeshma M.; Naidu, C. V.; Baskaran, R.; Venkatraman, B.

    2016-08-01

    In this work, the impact of air-sea coupling on tropical cyclone (TC) predictions is studied using a three-dimensional Price-Weller-Pinkel (3DPWP) ocean model coupled to the Advanced Research Weather Research and Forecasting in six tropical storms in the North Indian Ocean, representing different intensities, seasonality, and varied oceanic conditions. A set of numerical experiments are conducted for each cyclone using sea surface temperature (SST) boundary conditions derived from Global Forecast System (GFS) SST, NOAA/National Centers for Environmental Prediction SST, and ocean coupling (3DPWP). Significant differences and improvements are found in the predicted intensity and track in the simulations, in which the cyclones' impact on SST is included. It has been found that while the uncoupled model using GFS SST considerably overestimated the intensity as well as produced large track errors, the ocean coupling substantially improved the track and intensity predictions. The improvements with 3DPWP are because of simulating the ocean-atmosphere feedback in terms of deepening of ocean mixed layer, reduction in enthalpy fluxes, and storm-induced SST cooling as seen in observations. The coupled model could simulate the cold wake in SST, asymmetries in the surface winds, enthalpy fluxes, size, and structure of the storm in better agreement with observations than the uncoupled model. The coupled model reduced the track errors by roughly 0.3-39% and intensity errors by 29-47% at 24-96 h predictions by controlling the northward deviation of storms tracks by SST cooling and associated changes in the dynamics. The vorticity changes associated with horizontal advection and stretching terms affect the tracks of the storms in the three simulations.

  16. Simulating Wave-Driven Circulation in Tidal Inlets With Tide and River Forcing Using a Coupled Hydrodynamic-Wave Model

    NASA Astrophysics Data System (ADS)

    Cobb, M.; Blain, C. A.

    2001-12-01

    Tidal inlets are important areas with respect to bio-diversity, sediment transport, and fresh water river outflow. This study examines the 2-D depth-averaged circulation of inlets that are driven by waves, tides, and fresh water river inflow using a coupled hydrodynamic-wave model. The circulation patterns of an ideal embayment and Bay St. Louis, located in the northeastern Gulf of Mexico, are compared under the range of forcing conditions. Wave-current interaction is simulated by iteratively coupling the depth-integrated ADCIRC-2DDI hydrodynamic model to the phase-averaged spectral wave model SWAN. Radiation stress gradients are determined from the wave predictions of SWAN and used to force the circulation model. ADCIRC-2DDI is a fully developed, 2-dimensional, finite element, barotropic hydrodynamic model capable of including wind, wave, and tidal forcing as well as river flux into the domain. The circulation within each inlet is examined during the flood, slack, and ebb phases of the tidal cycles with and without river inflow under different wave conditions. The effects of including/excluding advection and varying the strength of the lateral mixing are examined as well. The influence of the various forcings on bay/inlet circulation is further investigated by the introduction of Lagrangian tracers. Lagrangian tracers are a reasonable indicator of how circulation patterns affect the motion of sediment particles or passive biological organisms such as fish larvae. Lastly, influence of the wave model itself in the hydrodynamic coupling, and in particular the effect of wave diffraction on the wave-induced circulation, is comparatively examined within the ideal inlet by separately coupling the REF/DIF1 and REF/DIFS wave models to ADCIRC-2DDI; REF/DIF1 is a monochromatic phase-resolving wave model capable of simulating wave diffraction and refraction and REF/DIF-S is a multi-spectral version of REF/DIF1.

  17. Electromagnetic coupling and array packing induce exchange of dominance on complex modes in 3D periodic arrays of spheres with large permittivity

    DOE PAGES

    Campione, Salvatore; Capolino, Filippo

    2016-01-25

    In this study, we investigate the effect on wave propagation of array packing and electromagnetic coupling between spheres in a three-dimensional (3D) lattice of microspheres with large permittivity that exhibit strong magnetic polarizability. We report on the complex wavenumber of Bloch waves in the lattice when each sphere is assumed to possess both electric and magnetic dipoles and full electromagnetic coupling is accounted for. While for small material-filling fractions we always determine one dominant mode with low attenuation constant, the same does not happen for large filling fractions, when electromagnetic coupling is included. In the latter case we peculiarly observemore » two dominant modes with low attenuation constant, dominant in different frequency ranges. The filling fraction threshold for which two dominant modes appear varies for different metamaterial constituents, as proven by considering spheres made by either titanium dioxide or lead telluride. As further confirmation of our findings, we retrieve the complex propagation constant of the dominant mode(s) via a field fitting procedure employing two sets of waves (direct and reflected) pertaining to two distinct modes, strengthening the presence of the two distinct dominant modes for increasing filling fractions. However, given that one mode only, with transverse polarization, at any given frequency, is dominant and able to propagate inside the lattice, we are able to accurately treat the metamaterial that is known to exhibit artificial magnetism as a homogeneous material with effective parameters, such as the refractive index. Results clearly show that the account of both electric and magnetic scattering processes in evaluating all electromagnetic intersphere couplings is essential for a proper description of the electromagnetic propagation in lattices.« less

  18. Electromagnetic coupling and array packing induce exchange of dominance on complex modes in 3D periodic arrays of spheres with large permittivity

    SciTech Connect

    Campione, Salvatore; Capolino, Filippo

    2016-01-25

    In this study, we investigate the effect on wave propagation of array packing and electromagnetic coupling between spheres in a three-dimensional (3D) lattice of microspheres with large permittivity that exhibit strong magnetic polarizability. We report on the complex wavenumber of Bloch waves in the lattice when each sphere is assumed to possess both electric and magnetic dipoles and full electromagnetic coupling is accounted for. While for small material-filling fractions we always determine one dominant mode with low attenuation constant, the same does not happen for large filling fractions, when electromagnetic coupling is included. In the latter case we peculiarly observe two dominant modes with low attenuation constant, dominant in different frequency ranges. The filling fraction threshold for which two dominant modes appear varies for different metamaterial constituents, as proven by considering spheres made by either titanium dioxide or lead telluride. As further confirmation of our findings, we retrieve the complex propagation constant of the dominant mode(s) via a field fitting procedure employing two sets of waves (direct and reflected) pertaining to two distinct modes, strengthening the presence of the two distinct dominant modes for increasing filling fractions. However, given that one mode only, with transverse polarization, at any given frequency, is dominant and able to propagate inside the lattice, we are able to accurately treat the metamaterial that is known to exhibit artificial magnetism as a homogeneous material with effective parameters, such as the refractive index. Results clearly show that the account of both electric and magnetic scattering processes in evaluating all electromagnetic intersphere couplings is essential for a proper description of the electromagnetic propagation in lattices.

  19. Dam-Break Flooding and Structural Damage in a Residential Neighborhood: Performance of a coupled hydrodynamic-damage model

    NASA Astrophysics Data System (ADS)

    Sanders, B. F.; Gallegos, H. A.; Schubert, J. E.

    2011-12-01

    The Baldwin Hills dam-break flood and associated structural damage is investigated in this study. The flood caused high velocity flows exceeding 5 m/s which destroyed 41 wood-framed residential structures, 16 of which were completed washed out. Damage is predicted by coupling a calibrated hydrodynamic flood model based on the shallow-water equations to structural damage models. The hydrodynamic and damage models are two-way coupled so building failure is predicted upon exceedance of a hydraulic intensity parameter, which in turn triggers a localized reduction in flow resistance which affects flood intensity predictions. Several established damage models and damage correlations reported in the literature are tested to evaluate the predictive skill for two damage states defined by destruction (Level 2) and washout (Level 3). Results show that high-velocity structural damage can be predicted with a remarkable level of skill using established damage models, but only with two-way coupling of the hydrodynamic and damage models. In contrast, when structural failure predictions have no influence on flow predictions, there is a significant reduction in predictive skill. Force-based damage models compare well with a subset of the damage models which were devised for similar types of structures. Implications for emergency planning and preparedness as well as monetary damage estimation are discussed.

  20. A coupled three-dimensional hydrodynamic model for predicting hypolimnetic oxygenation and epilimnetic mixing in a shallow eutrophic reservoir

    NASA Astrophysics Data System (ADS)

    Chen, Shengyang; Lei, Chengwang; Carey, Cayelan C.; Gantzer, Paul A.; Little, John C.

    2017-01-01

    Artificial mixing and hypolimnetic oxygenation are two common methods for improving water quality in reservoirs. To examine the effects of their operation on the thermal structure of the water column, we used a three-dimensional hydrodynamic model coupled with a newly developed water-jet model and an existing linear bubble-plume model in conjunction with whole-reservoir in situ mixing experiments in a drinking-water reservoir. This reservoir has a side-stream supersaturation (SSS) hypolimnetic oxygenation system and a bubble-plume epilimnetic mixing (EM) system installed to reduce hypolimnetic hypoxia and algal blooms. The results show that the SSS successfully adds dissolved oxygen to the hypolimnion without destratifying the reservoir, whereas the EM, located at the lower metalimnetic boundary, deepens this boundary and partially mixes the metalimnion and epilimnion. The newly developed water-jet model coupled with the hydrodynamic model can successfully predict the variation of the thermal structure in the reservoir. The extent to which the SSS and EM systems affect the thermal structure of the reservoir is also quantified by further application of the coupled hydrodynamic model.

  1. A fully coupled method for massively parallel simulation of hydraulically driven fractures in 3-dimensions: FULLY COUPLED PARALLEL SIMULATION OF HYDRAULIC FRACTURES IN 3-D

    DOE PAGES

    Settgast, Randolph R.; Fu, Pengcheng; Walsh, Stuart D. C.; ...

    2016-09-18

    This study describes a fully coupled finite element/finite volume approach for simulating field-scale hydraulically driven fractures in three dimensions, using massively parallel computing platforms. The proposed method is capable of capturing realistic representations of local heterogeneities, layering and natural fracture networks in a reservoir. A detailed description of the numerical implementation is provided, along with numerical studies comparing the model with both analytical solutions and experimental results. The results demonstrate the effectiveness of the proposed method for modeling large-scale problems involving hydraulically driven fractures in three dimensions.

  2. Strongly coupled single-phase flow problems: Effects of density variation, hydrodynamic dispersion, and first order decay

    SciTech Connect

    Oldenburg, C.M.; Pruess, K.

    1995-03-01

    We have developed TOUGH2 modules for strongly coupled flow and transport that include full hydrodynamic dispersion. T2DM models tow-dimensional flow and transport in systems with variable salinity, while T32DMR includes radionuclide transport with first-order decay of a parent-daughter chain of radionuclide components in variable salinity systems. T2DM has been applied to a variety of coupled flow problems including the pure solutal convection problem of Elder and the mixed free and forced convection salt-dome flow problem. In the Elder and salt-dome flow problems, density changes of up to 20% caused by brine concentration variations lead to strong coupling between the velocity and brine concentration fields. T2DM efficiently calculates flow and transport for these problems. We have applied T2DMR to the dispersive transport and decay of radionuclide tracers in flow fields with permeability heterogeneities and recirculating flows. Coupling in these problems occurs by velocity-dependent hydrodynamic dispersion. Our results show that the maximum daughter species concentration may occur fully within a recirculating or low-velocity region. In all of the problems, we observe very efficient handling of the strongly coupled flow and transport processes.

  3. Strongly coupled single-phase flow problems: Effects of density variation, hydrodynamic dispersion, and first order decay

    SciTech Connect

    Oldenburg, C.M.; Pruess, K.

    1995-03-01

    We have developed TOUGH2 modules for strongly coupled flow and transport that include full hydrodynamic dispersion. T2DM models two-dimensional flow and transport in systems with variable salinity, while T2DMR includes radionuclide transport with firstorder decay of a parent-daughter chain of radionuclide components in variable salinity systems. T2DM has been applied to a variety of coupled flow problems including the pure solutal convection problem of Elder and the mixed free and forced convection salt-dome flow problem. In the Elder and salt-dome flow problems, density changes of up to 20% caused by brine concentration variations lead to strong coupling between the velocity and brine concentration fields. T2DM efficiently calculates flow and transport for these problems. We have applied T2DMR to the dispersive transport and decay of radionuclide tracers in flow fields with permeability heterogeneities and recirculating flows. Coupling in th ese problems occurs by velocity-dependent hydrodynamic dispersion. Our results show that the maximum daughter species concentration may occur fully within a recirculating or low-velocity region. In all of the problems, we observe very efficient handling of the strongly coupled flow and transport processes.

  4. The coupling between idealized 2D eddies and 3D small-scale turbulence in the upper ocean and its implications for oil transport simulations using ENDLESS

    NASA Astrophysics Data System (ADS)

    Chen, B.; Yang, D.; Meneveau, C. V.; Chamecki, M.

    2016-12-01

    As oil plumes from deep-water blowouts reach the ocean mixed layer (OML), they experience considerable horizontal and vertical dilution due to the action of Langmuir turbulence, submesoscale eddies and Ekman transport. Previous studies using large-eddy simulation (LES) have shown that Langmuir turbulence can impact the transport direction, lateral diffusion and geometry of surface oil plume, depending on the size of oil droplets. However, the large range of relevant length scales, from submesoscale eddies down to small-scale 3D Langmuir turbulence, makes it challenging to accurately reproduce the long-term evolution of oil plumes in the upper ocean using conventional large-eddy simulation strategies. The extended nonperiodic domain large-eddy simulation for scalars (ENDLESS) is a new technique developed as a multi-scale approach to simulate long-term oil plume dispersion at a reasonable computational cost. The basic idea is to simulate Langmuir turbulence on a LES domain with a small but sufficient horizontal domain size to capture the essential physics of the flow field, while simulating the oil plume evolution over an effectively horizontally extended large domain. Moreover, this ENDLESS method permits the superposition of large-scale quasi-2D ocean eddies on the oil advection, allowing for coupling with regional ocean circulation models. Using this new numerical tool, the effects of the interactions between 3D turbulence and 2D eddies on the flow field and on oil dispersion are elucidated by comparing the results from ENDLESS with those from conventional LES. This research was made possible by a grant from The Gulf of Mexico Research Initiative.

  5. Bond Dissociation Energies for Diatomic Molecules Containing 3d Transition Metals: Benchmark Scalar-Relativistic Coupled-Cluster Calculations for 20 Molecules

    DOE PAGES

    Cheng, Lan; Gauss, Jürgen; Ruscic, Branko; ...

    2017-01-12

    Benchmark scalar-relativistic coupled-cluster calculations for dissociation energies of the 20 diatomic molecules containing 3d transition metals in the 3dMLBE20 database ( J. Chem. Theory Comput. 2015, 11, 2036) are reported in this paper. Electron correlation and basis set effects are systematically studied. The agreement between theory and experiment is in general satisfactory. For a subset of 16 molecules, the standard deviation between computational and experimental values is 9 kJ/mol with the maximum deviation being 15 kJ/mol. The discrepancies between theory and experiment remain substantial (more than 20 kJ/mol) for VH, CrH, CoH, and FeH. To explore the source of themore » latter discrepancies, the analysis used to determine the experimental dissociation energies for VH and CrH is revisited. It is shown that, if improved values are used for the heterolytic C–H dissociation energies of di- and trimethylamine involved in the experimental determination, the experimental values for the dissociation energies of VH and CrH are increased by 18 kJ/mol, such that D0(VH) = 223 ± 7 kJ/mol and D0(CrH) = 204 ± 7 kJ/mol (or De(VH) = 233 ± 7 kJ/mol and De(CrH) = 214 ± 7 kJ/mol). Finally, the new experimental values agree quite well with the calculated values, showing the consistency of the computation and the measured reaction thresholds.« less

  6. Targeting Nonsquamous Nonsmall Cell Lung Cancer via the Proton-Coupled Folate Transporter with 6-Substituted Pyrrolo[2,3-d]Pyrimidine Thienoyl Antifolates

    PubMed Central

    Wilson, Mike R.; Hou, Zhanjun; Yang, Si; Polin, Lisa; Kushner, Juiwanna; White, Kathryn; Huang, Jenny; Ratnam, Manohar; Gangjee, Aleem

    2016-01-01

    Pemetrexed (PMX) is a 5-substituted pyrrolo[2,3-d]pyrimidine antifolate used for therapy of nonsquamous nonsmall cell lung cancer (NS-NSCLC). PMX is transported by the reduced folate carrier (RFC) and proton-coupled folate transporter (PCFT). Unlike RFC, PCFT is active at acidic pH levels characterizing the tumor microenvironment. By real-time reverse-transcription polymerase chain reaction (RT-PCR) and immunohistochemistry, PCFT transcripts and proteins were detected in primary NS-NSCLC specimens. In six NS-NSCLC cell lines (A549, H1437, H460, H1299, H1650, and H2030), PCFT transcripts and proteins were detected by real-time RT-PCR and western blots, respectively. 6-Substituted pyrrolo[2,3-d]pyrimidine thienoyl antifolates related to PMX [compound 1 (C1) and compound 2 (C2), respectively] are selective substrates for PCFT over RFC. In the NS-NSCLC cell lines, both [3H]PMX and [3H]C2 were transported by PCFT. C1 and C2 inhibited proliferation of the NS-NSCLC cell lines; A549, H460, and H2030 cells were more sensitive to C1 than to PMX. C1 and C2 inhibited glycinamide ribonucleotide formyltransferase in de novo purine nucleotide biosynthesis. When treated at pH 6.8, which favors PCFT uptake, C1 and C2 inhibited clonogenicity of H460 cells greater than PMX; PMX inhibited clonogenicity more than C1 or C2 at pH 7.2, which favors RFC transport over PCFT. Knockdown of PCFT in H460 cells resulted in decreased [3H]PMX and [3H]C2 transport and decreased growth inhibition by C1 and C2, and to a lesser extent by PMX. In vivo efficacy of C1 was seen toward H460 tumor xenografts in severe-combined immunodeficient mice. Our results suggest that 6-substituted pyrrolo[2,3-d]pyrimidine thienoyl antifolates offer significant promise for treating NS-NSCLC by selective uptake by PCFT. PMID:26837243

  7. Geodetic imaging of potential seismogenic asperities on the Xianshuihe-Anninghe-Zemuhe fault system, southwest China, with a new 3-D viscoelastic interseismic coupling model

    NASA Astrophysics Data System (ADS)

    Jiang, Guoyan; Xu, Xiwei; Chen, Guihua; Liu, Yajing; Fukahata, Yukitoshi; Wang, Hua; Yu, Guihua; Tan, Xibin; Xu, Caijun

    2015-03-01

    We use GPS and interferometric synthetic aperture radar (InSAR) measurements to image the spatial variation of interseismic coupling on the Xianshuihe-Anninghe-Zemuhe (XAZ) fault system. A new 3-D viscoelastic interseismic deformation model is developed to infer the rotation and strain rates of blocks, postseismic viscoelastic relaxation, and interseismic slip deficit on the fault surface discretized with triangular dislocation patches. The inversions of synthetic data show that the optimal weight ratio and smoothing factor are both 1. The successive joint inversions of geodetic data with different viscosities reveal six potential fully coupled asperities on the XAZ fault system. Among them, the potential asperity between Shimian and Mianning, which does not exist in the case of 1019 Pa s, is confirmed by the published microearthquake depth profile. Besides, there is another potential partially coupled asperity between Daofu and Kangding with a length scale up to 140 km. All these asperity sizes are larger than the minimum resolvable wavelength. The minimum and maximum slip deficit rates near the Moxi town are 7.0 and 12.7 mm/yr, respectively. Different viscosities have little influence on the roughness of the slip deficit rate distribution and the fitting residuals, which probably suggests that our observations cannot provide a good constraint on the viscosity of the middle lower crust. The calculation of seismic moment accumulation on each segment indicates that the Songlinkou-Selaha (S4), Shimian-Mianning (S7), and Mianning-Xichang (S8) segments are very close to the rupture of characteristic earthquakes. However, the confidence level is confined by sparse near-fault observations.

  8. The influence of computational strategy on prediction of mechanical stress in carotid atherosclerotic plaques: comparison of 2D structure-only, 3D structure-only, one-way and fully coupled fluid-structure interaction analyses.

    PubMed

    Huang, Yuan; Teng, Zhongzhao; Sadat, Umar; Graves, Martin J; Bennett, Martin R; Gillard, Jonathan H

    2014-04-11

    Compositional and morphological features of carotid atherosclerotic plaques provide complementary information to luminal stenosis in predicting clinical presentations. However, they alone cannot predict cerebrovascular risk. Mechanical stress within the plaque induced by cyclical changes in blood pressure has potential to assess plaque vulnerability. Various modeling strategies have been employed to predict stress, including 2D and 3D structure-only, 3D one-way and fully coupled fluid-structure interaction (FSI) simulations. However, differences in stress predictions using different strategies have not been assessed. Maximum principal stress (Stress-P1) within 8 human carotid atherosclerotic plaques was calculated based on geometry reconstructed from in vivo computerized tomography and high resolution, multi-sequence magnetic resonance images. Stress-P1 within the diseased region predicted by 2D and 3D structure-only, and 3D one-way FSI simulations were compared to 3D fully coupled FSI analysis. Compared to 3D fully coupled FSI, 2D structure-only simulation significantly overestimated stress level (94.1 kPa [65.2, 117.3] vs. 85.5 kPa [64.4, 113.6]; median [inter-quartile range], p=0.0004). However, when slices around the bifurcation region were excluded, stresses predicted by 2D structure-only simulations showed a good correlation (R(2)=0.69) with values obtained from 3D fully coupled FSI analysis. 3D structure-only model produced a small yet statistically significant stress overestimation compared to 3D fully coupled FSI (86.8 kPa [66.3, 115.8] vs. 85.5 kPa [64.4, 113.6]; p<0.0001). In contrast, one-way FSI underestimated stress compared to 3D fully coupled FSI (78.8 kPa [61.1, 100.4] vs. 85.5 kPa [64.4, 113.7]; p<0.0001). A 3D structure-only model seems to be a computationally inexpensive yet reasonably accurate approximation for stress within carotid atherosclerotic plaques with mild to moderate luminal stenosis as compared to fully coupled FSI analysis

  9. Parallel shear flow instabilities in strongly coupled Yukawa liquids: A comparison of generalized hydrodynamic model and molecular dynamics results

    SciTech Connect

    Ashwin, J.; Ganesh, R.

    2010-10-15

    Using a generalized hydrodynamic (GH) model, the growth rate spectra of Kelvin-Helmholtz (KH) instability has been obtained analytically for a step shear profile in strongly coupled Yukawa liquids. The class of shear flows studied is assumed to be incompressible in nature. The growth rate spectra calculated exhibit viscous damping at high mode numbers, destabilization at stronger coupling, and in the limit {tau}{sub m} (viscoelastic relaxation time){yields}0, reduce to the regular Navier-Stokes growth rate spectra. A direct comparison is made with previous molecular dynamics (MD) simulations [Ashwin J. and R. Ganesh, Phys. Rev. Lett. 104, 215003 (2010)] of KH instability. We find that for a given value of Reynolds number R and coupling parameter 1<{Gamma}<100, the GH and MD growth rates are in a qualitative agreement. The inclusion of the effect of shear heating as an effective coupling parameter {Gamma}{sub e} appears to improve the quantitative comparison as well.

  10. The impact of fault zones on the 3D coupled fluid and heat transport for the area of Brandenburg (NE German Basin)

    NASA Astrophysics Data System (ADS)

    Yvonne, Cherubini; Mauro, Cacace; Scheck-Wenderoth, Magdalena

    2013-04-01

    Faults can provide permeable pathways for fluids at a variety of scales, from great depth in the crust to flow through fractured aquifers, geothermal fields, and hydrocarbon reservoirs (Barton et al. 1995). In terms of geothermal energy exploration, it is essential to understand the role of faults and their impact on the thermal field and fluid system. 3D numerical simulations provide a useful tool for investigating the active physical processes in the subsurface. To assess the influence of major fault zones on the thermal field and fluid system, 3D coupled fluid and heat transport simulations are carried out. The study is based on a recently published structural model of the Brandenburg area, which is located in the south-eastern part of the Northeast German Basin (NEGB) (Noack et al. 2010). Two major fault zones of the Elbe Fault System (Gardelegen and Lausitz Escarpments) vertically offset the pre-Permian basement against the Permian to Cenozoic basin fill at the southern margin by several km (Scheck et al. 2002). Within the numerical models, these two major fault zones are represented as equivalent porous media and vertical discrete elements. The coupled system of equations describing fluid flow and heat transport in saturated porous media are numerically solved by the Finite Element software FEFLOW® (Diersch, 2002). Different possible geological scenarios are modelled and compared to a simulation in which no faults are considered. In one scenario the fault zones are set as impermeable. In this case, the thermal field is similar to the no fault model. Fluid flow is redirected because the fault zones act as hydraulic barriers that prevent a lateral fluid advection into the fault zones. By contrast, modelled permeable fault zones induce a pronounced thermal signature with distinctly cooler temperatures than in the no fault model. Fluid motion within the fault is initially triggered by advection due to hydraulic head gradients, but may be even enhanced by

  11. 3D thermohydraulic modeling of the coupling of surface water bodies to the subsurface below the major urban center of Berlin

    NASA Astrophysics Data System (ADS)

    Frick, Maximilian; Scheck-Wenderoth, Magdalena; Cacace, Mauro; Schneider, Michael

    2017-04-01

    This study aims at a better understanding of the present-day thermal and hydraulic configuration below the major urban center of Berlin, capital city of Germany. The study area is located in the Northeast German Basin, showing an infill of several kilometers of sediments. Herein, the shallow sedimentary succession is made up of a sequence of alternating aquifers and aquitards, most importantly the local aquitard of the Rupelian clay. This geological unit represents a natural barrier between the deeper saline aquifers and the shallow fresh water aquifers from whom Berlin produces 100% of its drinking water. Additionally, the shallow thermal and hydraulic configuration has been anthropogenically overprinted which may also influence deeper domains to some extent. In this study we make use of 3D thermohydraulic models of the subsurface, focusing on the coupling of surface water bodies to the underground, based on newly available hydraulic data integrated into a 3D hydrogeological model. The results of the study show, that the coupling of surface water bodies and groundwater might lead to significant modifications of predicted subsurface temperatures and fluid flow field. These modifications are most prominent, where differences in hydraulic head between surface water bodies and the adjacent aquifers are highest. Consequently, the predicted surface to groundwater flow field differs most in these areas and it also results in differences in predicted temperatures as a consequence of advective heat transport. Quantitatively, the presence of major lakes may account for temperature differences up to 5°C, while considering rivers only accounts for modifications up to 1°C. Additionally, the models created in this study set up a basis for future thermohaline simulations as saline groundwater may represent a threat to drinking water supply. First results from the models run in this study already indicate, that uprising heated water from deeper domains may rise to shallow

  12. San Francisco Bay test case for 3-D model verification

    USGS Publications Warehouse

    Smith, Peter E.

    1994-01-01

    This paper describes a field test case for 3-D hydrodynamic model verification using data from Carquinez Strait in San Francisco Bay, California. It will be disseminated by the ASCE Computational Hydraulics task committee on 3-D Free-Surface Hydrodynamic Model Verifications during late 1994.

  13. Performance analysis of coupled and uncoupled hydrodynamic and wave models in the northern Adriatic Sea

    NASA Astrophysics Data System (ADS)

    Busca, Claudia; Coluccelli, Alessandro; Valentini, Andrea; Benetazzo, Alvise; Bonaldo, Davide; Bortoluzzi, Giovanni; Carniel, Sandro; Falcieri, Francesco; Paccagnella, Tiziana; Ravaioli, Mariangela; Riminucci, Francesco; Sclavo, Mauro; Russo, Aniello

    2014-05-01

    The complex dynamics of the Adriatic Sea are the result of geographical position, orography and bathymetry, as well as rivers discharge and meteorological conditions that influence, more strongly, the shallow northern part. Such complexity requires a constant monitoring of marine conditions in order to support several activities (marine resources management, naval operations, emergency management, shipping, tourism, as well as scientific ones). Platforms, buoys and mooring located in Adriatic Sea supply almost continuously real time punctual information, which can be spatially extended, with some limitations, by drifters and remote sensing. Operational forecasting systems represent valid tools to provide a complete tridimensional coverage of the area, with a high spatial and temporal resolution. The Hydro-Meteo-Clima Service of the Emilia-Romagna Environmental Agency (ARPA-SIMC, Bologna, Italy) and the Dept. of Life and Environmental Sciences of Università Politecnica delle Marche (DISVA-UNIVPM, Ancona, Italy), in collaboration with the Institute of Marine Science of the National Research Council (ISMAR-CNR, Italy) operationally run several wave and hydrodynamic models on the Adriatic Sea. The main implementations are based on the Regional Ocean Modeling System (ROMS), the wave model Simulating WAves Nearshore (SWAN), and the coupling of the former two models in the Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST) system. Horizontal resolutions of the different systems range from the 2 km of AdriaROMS to the 0.5 km of the recently implemented northern Adriatic COAWST. Forecasts are produced every day for the subsequent 72 hour with hourly resolution. All the systems compute the fluxes exchanged through the interface with the atmosphere from the numerical weather prediction system named COSMO-I7, an implementation for Italy of the Consortium for Small-scale Modeling (COSMO) model, at 7 km horizontal resolution. Considering the several operational

  14. Computational hydrodynamics and optical performance of inductively-coupled plasma adaptive lenses

    NASA Astrophysics Data System (ADS)

    Mortazavi, M.; Urzay, J.; Mani, A.

    2015-06-01

    This study addresses the optical performance of a plasma adaptive lens for aero-optical applications by using both axisymmetric and three-dimensional numerical simulations. Plasma adaptive lenses are based on the effects of free electrons on the phase velocity of incident light, which, in theory, can be used as a phase-conjugation mechanism. A closed cylindrical chamber filled with Argon plasma is used as a model lens into which a beam of light is launched. The plasma is sustained by applying a radio-frequency electric current through a coil that envelops the chamber. Four different operating conditions, ranging from low to high powers and induction frequencies, are employed in the simulations. The numerical simulations reveal complex hydrodynamic phenomena related to buoyant and electromagnetic laminar transport, which generate, respectively, large recirculating cells and wall-normal compression stresses in the form of local stagnation-point flows. In the axisymmetric simulations, the plasma motion is coupled with near-wall axial striations in the electron-density field, some of which propagate in the form of low-frequency traveling disturbances adjacent to vortical quadrupoles that are reminiscent of Taylor-Görtler flow structures in centrifugally unstable flows. Although the refractive-index fields obtained from axisymmetric simulations lead to smooth beam wavefronts, they are found to be unstable to azimuthal disturbances in three of the four three-dimensional cases considered. The azimuthal striations are optically detrimental, since they produce high-order angular aberrations that account for most of the beam wavefront error. A fourth case is computed at high input power and high induction frequency, which displays the best optical properties among all the three-dimensional simulations considered. In particular, the increase in induction frequency prevents local thermalization and leads to an axisymmetric distribution of electrons even after introduction of

  15. Coupling between hydrodynamics, acoustics, and heat release in a self-excited unstable combustor

    NASA Astrophysics Data System (ADS)

    Harvazinski, Matthew E.; Huang, Cheng; Sankaran, Venkateswaran; Feldman, Thomas W.; Anderson, William E.; Merkle, Charles L.; Talley, Douglas G.

    2015-04-01

    The unsteady gas dynamic field in a closed combustor is determined by the nonlinear interactions between chamber acoustics, hydrodynamics, and turbulent combustion that can energize these modes. These interactions are studied in detail using hybrid RANS/large eddy simulations (RANS = Reynolds Averaged Navier-Stokes) of a non-premixed, high-pressure laboratory combustor that produces self-excited longitudinal instabilities. The main variable in the study is the relative acoustic length between the combustion chamber and the tube that injects oxidizer into the combustor. Assuming a half-wave (closed-closed) combustion chamber, the tube lengths approximately correspond to quarter-, 3/8-, and half-wave resonators that serve to vary the phasing between the acoustic modes in the tube and the combustion chamber. The simulation correctly predicts the relatively stable behavior measured with the shortest tube and the very unstable behavior measured with the intermediate tube. Unstable behavior is also predicted for the longest tube, a case for which bifurcated stability behavior was measured in the experiment. In the first (stable) configuration, fuel flows into the combustor uninterrupted, and heat release is spatially continuous with a flame that remains attached to the back step. In the second (unstable) configuration, a cyclic process is apparent comprising a disruption in the fuel flow, subsequent detachment of the flame from the back step, and accumulation of fuel in the recirculation zone that ignites upon arrival of a compression wave reflected from the downstream boundary of the combustion chamber. The third case (mixed stable/unstable) shares features with both of the other cases. The major difference between the two cases predicted to be unstable is that, in the intermediate length tube, a pressure wave reflection inside the tube pushes unburnt fuel behind the back step radially outward, leading to a post-coupled reignition mechanism, while in the case of the

  16. Computational hydrodynamics and optical performance of inductively-coupled plasma adaptive lenses

    SciTech Connect

    Mortazavi, M.; Urzay, J. Mani, A.

    2015-06-15

    This study addresses the optical performance of a plasma adaptive lens for aero-optical applications by using both axisymmetric and three-dimensional numerical simulations. Plasma adaptive lenses are based on the effects of free electrons on the phase velocity of incident light, which, in theory, can be used as a phase-conjugation mechanism. A closed cylindrical chamber filled with Argon plasma is used as a model lens into which a beam of light is launched. The plasma is sustained by applying a radio-frequency electric current through a coil that envelops the chamber. Four different operating conditions, ranging from low to high powers and induction frequencies, are employed in the simulations. The numerical simulations reveal complex hydrodynamic phenomena related to buoyant and electromagnetic laminar transport, which generate, respectively, large recirculating cells and wall-normal compression stresses in the form of local stagnation-point flows. In the axisymmetric simulations, the plasma motion is coupled with near-wall axial striations in the electron-density field, some of which propagate in the form of low-frequency traveling disturbances adjacent to vortical quadrupoles that are reminiscent of Taylor-Görtler flow structures in centrifugally unstable flows. Although the refractive-index fields obtained from axisymmetric simulations lead to smooth beam wavefronts, they are found to be unstable to azimuthal disturbances in three of the four three-dimensional cases considered. The azimuthal striations are optically detrimental, since they produce high-order angular aberrations that account for most of the beam wavefront error. A fourth case is computed at high input power and high induction frequency, which displays the best optical properties among all the three-dimensional simulations considered. In particular, the increase in induction frequency prevents local thermalization and leads to an axisymmetric distribution of electrons even after introduction of

  17. Coupling surface water (Delft3D) to groundwater (MODFLOW) in the Bay-Delta community model: the effect of major abstractions in the Delta

    NASA Astrophysics Data System (ADS)

    Hendriks, D.; Ball, S. M.; Van der Wegen, M.; Verkaik, J.; van Dam, A.

    2016-12-01

    We present a coupled groundwater-surface water model for the San Francisco Bay and Sacramento Valley that consists of a combination of a spatially-distributed groundwater model (Modflow) based on the USGS Central Valley model(1) and the Flexible Mesh (FM) surface water model of the Bay Area(2). With this coupled groundwater-surface water model, we assessed effects of climate, surface water abstractions and groundwater pumping on surface water and groundwater levels, groundwater-surface water interaction and infiltration/seepage fluxes. Results show that the effect of climate (high flow and low flow) on surface water and groundwater is significant and most prominent in upstream areas. The surface water abstractions cause significant local surface water levels decrease (over 2 m), which may cause inflow of bay water during low flow periods, resulting in salinization of surface water in more upstream areas. Groundwater level drawdown due to surface water withdrawal is moderate and limited to the area of the withdrawals. The groundwater pumping causes large groundwater level drawdowns (up to 0.8 m) and significant changes in seepage/infiltration fluxes in the model. However, the effect on groundwater-surface water exchange is relatively small. The presented model instrument gives a sound first impression of the effects of climate and water abstraction on both surface water and groundwater. The combination of Modflow and Flexible Mesh has potential for modelling of groundwater-surface water exchange in deltaic areas, also in other parts of the world. However, various improvements need to be made in order to make the simulation results useful in practice. In addition, a water quality aspect could be added to assess salinization processes as well as groundwater-surface water aspects of water and soil pollution. (1) http://ca.water.usgs.gov/projects/central-valley/central-valley-hydrologic-model.html (2) www.d3d-baydelta.org

  18. Unbiased Interrogation of 3D Genome Topology Using Chromosome Conformation Capture Coupled to High-Throughput Sequencing (4C-Seq).

    PubMed

    Brouwer, Rutger W W; van den Hout, Mirjam C G N; van IJcken, Wilfred F J; Soler, Eric; Stadhouders, Ralph

    2017-01-01

    The development and widespread implementation of chromosome conformation capture (3C) technology has allowed unprecedented new insight into how chromosomes are folded in three-dimensional (3D) space. 3C and its derivatives have contributed tremendously to the now widely accepted view that genome topology plays an important role in many major cellular processes, at a chromosome-wide scale, but certainly also at the level of individual genetic loci. A particularly popular application of 3C technology is to study transcriptional regulation, allowing researchers to draw maps of gene regulatory connections beyond the linear genome through addition of the third dimension. In this chapter, we provide a highly detailed protocol describing 3C coupled to high-throughput sequencing (referred to as 3C-Seq or more commonly 4C-Seq), allowing the unbiased interrogation of genome-wide chromatin interactions with specific genomic regions of interest. Interactions between spatially clustered DNA fragments are revealed by crosslinking the cells with formaldehyde, digesting the genome with a restriction endonuclease and performing a proximity ligation step to link interacting genomic fragments. Next, interactions with a selected DNA fragment are extracted from the 3C library through a second round of digestion and ligation followed by an inverse PCR. The generated products are immediately compatible with high-throughput sequencing, and amplicons from different PCR reactions can easily be multiplexed to dramatically increase throughput. Finally, we provide suggestions for data analysis and visualization.

  19. Low velocity crustal flow and crust-mantle coupling mechanism in Yunnan, SE Tibet, revealed by 3D S-wave velocity and azimuthal anisotropy

    NASA Astrophysics Data System (ADS)

    Chen, Haopeng; Zhu, Liangbao; Su, Youjin

    2016-08-01

    We used teleseismic data recorded by a permanent seismic network in Yunnan, SE Tibet, and measured the interstation Rayleigh wave phase velocity between 10 and 60 s. A two-step inversion scheme was used to invert for the 3D S-wave velocity and azimuthal anisotropy structure of 10-110 km. The results show that there are two low velocity channels between depths of 20-30 km in Yunnan and that the fast axes are sub-parallel to the strikes of the low velocity channels, which supports the crustal flow model. The azimuthal anisotropy pattern is quite complicated and reveals a complex crust-mantle coupling mechanism in Yunnan. The N-S trending Lüzhijiang Fault separates the Dianzhong Block into two parts. In the western Dianzhong Block, the fast axis of the S-wave changes with depth, which indicates that the crust and the lithospheric mantle are decoupled. In the eastern Dianzhong Block and the western Yangtze Craton, the crust and the lithospheric mantle may be decoupled because of crustal flow, despite a coherent S-wave fast axis at depths of 10-110 km. In addition, the difference between the S-wave fast axis in the lithosphere and the SKS splitting measurement suggests that the lithosphere and the upper mantle are decoupled there. In the Baoshan Block, the stratified anisotropic pattern suggests that the crust and the upper mantle are decoupled.

  20. Numerical Solution of 3D Poisson-Nernst-Planck Equations Coupled with Classical Density Functional Theory for Modeling Ion and Electron Transport in a Confined Environment

    NASA Astrophysics Data System (ADS)

    Meng, Da; Zheng, Bin; Lin, Guang; Sushko, Maria L.

    2014-11-01

    We have developed efficient numerical algorithms for solving 3D steady-state Poisson-Nernst-Planck (PNP) equations with excess chemical potentials described by the classical density functional theory (cDFT). The coupled PNP equations are discretized by a finite difference scheme and solved iteratively using the Gummel method with relaxation. The Nernst-Planck equations are transformed into Laplace equations through the Slotboom transformation. Then, the algebraic multigrid method is applied to efficiently solve the Poisson equation and the transformed Nernst-Planck equations. A novel strategy for calculating excess chemical potentials through fast Fourier transforms is proposed, which reduces computational complexity from $O(N^2)$ to $O(N\\log N)$, where $N$ is the number of grid points. Integrals involving the Dirac delta function are evaluated directly by coordinate transformation, which yields more accurate results compared to applying numerical quadrature to an approximated delta function. Numerical results for ion and electron transport in solid electrolyte for lithium-ion (Li-ion) batteries are shown to be in good agreement with the experimental data and the results from previous studies.

  1. A compact 3D-printed interface for coupling open digital microchips with Venturi easy ambient sonic-spray ionization mass spectrometry.

    PubMed

    Hu, Jie-Bi; Chen, Ting-Ru; Chang, Chia-Hsien; Cheng, Ji-Yen; Chen, Yu-Chie; Urban, Pawel L

    2015-03-07

    Digital microfluidics (DMF) based on the electrowetting-on-dielectric phenomenon is a convenient way of handling microlitre-volume aliquots of solutions prior to analysis. Although it was shown to be compatible with on-line mass spectrometric detection, due to numerous technical obstacles, the implementation of DMF in conjunction with MS is still beyond the reach of many analytical laboratories. Here we present a facile method for coupling open DMF microchips to mass spectrometers using Venturi easy ambient sonic-spray ionization operated at atmospheric pressure. The proposed interface comprises a 3D-printed body that can easily be "clipped" at the inlet of a standard mass spectrometer. The accessory features all the necessary connections for an open-architecture DMF microchip with T-shaped electrode arrangement, thermostatting of the microchip, purification of air (to prevent accidental contamination of the microchip), a Venturi pump, and two microfluidic pumps to facilitate transfer of samples and reagents onto the microchip. The system also incorporates a touch-screen panel and remote control for user-friendly operation. It is based on the use of popular open-source electronic modules, and can readily be assembled at low expense.

  2. Fourier Transform Microwave Spectrum of Propene-3-d1 (CH2=CHCH2D), Quadrupole Coupling Constants of Deuterium and a Semiexperimental Equilibrium Structure of Propene.

    PubMed

    Demaison, Jean; Craig, Norman C; Gurusinghe, Ranil Malaka; Tubergen, Michael John; Rudolph, Heinz Dieter; Coudert, Laurent H; Szalay, Peter G; Császár, Attila G

    2017-04-03

    The ground state rotational spectrum of propene-3-d1, CH2=CHCH2D, was measured by Fourier transform microwave spectroscopy. Transitions were assigned for the two conformers, one with the D atom in the symmetry plane (S) and the other with the D atom out of plane (A). The energy difference between the two conformers was calculated to be 6.5 cm-1, the S conformer having lower energy. The quadrupole hyperfine structure due to deuterium was resolved and analyzed for the two conformers. The experimental quadrupole coupling and the centrifugal distortion constants compared favorably to their ab initio counterparts. Ground state rotational constants for the S conformer are 40582.157(9), 9067.024(1), and 7766.0165(12) MHz. Ground state rotational constants for the A conformer are 43403.75(3), 8658.961(2), and 7718.247(2) MHz. For the A conformer, a small tunneling splitting (19 MHz) due to internal rotation was observed and analyzed. Using the new rotational constants of this work as well as those previously determined for the 13C species and for some deuterium-substituted species from the literature, a new semiexperimental equilibrium structure was determined and its high accuracy was confirmed. The difficulty in obtaining accurate coordinates for the out-of-plane hydrogen atom is discussed.

  3. Numerical Solution of 3D Poisson-Nernst-Planck Equations Coupled with Classical Density Functional Theory for Modeling Ion and Electron Transport in a Confined Environment

    SciTech Connect

    Meng, Da; Zheng, Bin; Lin, Guang; Sushko, Maria L.

    2014-08-29

    We have developed efficient numerical algorithms for the solution of 3D steady-state Poisson-Nernst-Planck equations (PNP) with excess chemical potentials described by the classical density functional theory (cDFT). The coupled PNP equations are discretized by finite difference scheme and solved iteratively by Gummel method with relaxation. The Nernst-Planck equations are transformed into Laplace equations through the Slotboom transformation. Algebraic multigrid method is then applied to efficiently solve the Poisson equation and the transformed Nernst-Planck equations. A novel strategy for calculating excess chemical potentials through fast Fourier transforms is proposed which reduces computational complexity from O(N2) to O(NlogN) where N is the number of grid points. Integrals involving Dirac delta function are evaluated directly by coordinate transformation which yields more accurate result compared to applying numerical quadrature to an approximated delta function. Numerical results for ion and electron transport in solid electrolyte for Li ion batteries are shown to be in good agreement with the experimental data and the results from previous studies.

  4. Coupled 3D Time-Dependent Wave-Packet Approach in Hyperspherical Coordinates: The D(+)+H2 Reaction on the Triple-Sheeted DMBE Potential Energy Surface.

    PubMed

    Ghosh, Sandip; Sahoo, Tapas; Adhikari, Satrajit; Sharma, Rahul; Varandas, António J C

    2015-12-17

    We implement a coupled three-dimensional (3D) time-dependent wave packet formalism for the 4D reactive scattering problem in hyperspherical coordinates on the accurate double many body expansion (DMBE) potential energy surface (PES) for the ground and first two singlet states (1(1)A', 2(1)A', and 3(1)A') to account for nonadiabatic processes in the D(+) + H2 reaction for both zero and nonzero values of the total angular momentum (J). As the long-range interactions in D(+) + H2 contribute significantly due to nonadiabatic effects, the convergence profiles of reaction probabilities for the reactive noncharge transfer (RNCT), nonreactive charge transfer (NRCT), and reactive charge transfer (RCT) processes are shown for different collisional energies with respect to the helicity (K) and total angular momentum (J) quantum numbers. The total and state-to-state cross sections are presented as a function of the collision energy for the initial rovibrational state v = 0, j = 0 of the diatom, and the calculated cross sections compared with other theoretical and experimental results.

  5. Lifetime of inner-shell hole states of Ar (2p) and Kr (3d) using equation-of-motion coupled cluster method

    SciTech Connect

    Ghosh, Aryya; Vaval, Nayana; Pal, Sourav

    2015-07-14

    Auger decay is an efficient ultrafast relaxation process of core-shell or inner-shell excited atom or molecule. Generally, it occurs in femto-second or even atto-second time domain. Direct measurement of lifetimes of Auger process of single ionized and double ionized inner-shell state of an atom or molecule is an extremely difficult task. In this paper, we have applied the highly correlated complex absorbing potential-equation-of-motion coupled cluster (CAP-EOMCC) approach which is a combination of CAP and EOMCC approach to calculate the lifetime of the states arising from 2p inner-shell ionization of an Ar atom and 3d inner-shell ionization of Kr atom. We have also calculated the lifetime of Ar{sup 2+}(2p{sup −1}3p{sup −1}) {sup 1}D, Ar{sup 2+}(2p{sup −1}3p{sup −1}) {sup 1}S, and Ar{sup 2+}(2p{sup −1}3s{sup −1}) {sup 1}P double ionized states. The predicted results are compared with the other theoretical results as well as experimental results available in the literature.

  6. Inverse Problem for 3D coupled Flow-Geomechanics Models and Induced Seismicity: Application to Subsurface Characterization and Seismicity Forecasting in Geologic CO2 Storage

    NASA Astrophysics Data System (ADS)

    Castineira, D.; Jha, B.; Juanes, R.

    2016-12-01

    Carbon Capture and Sequestration (CCS) is regarded as a promising technology to mitigate rising CO2 concentrations in the atmosphere from industrial emissions. However, as a result of the inherent uncertainty that is present in geological structures, assessing the stability of geological faults and quantifying the potential for induced seismicity is a fundamental challenge for practical implementation of CCS. Here we present a formal framework for the solution of the inverse problem associated with coupled flow and geomechanics models of CO2 injection and subsurface storage. Our approach builds from the application of Gaussian Processes, MCMC and posterior predictive analysis to evaluate relevant earthquake attributes (earthquake time, location and magnitude) in 3D synthetic models of CO2 storage under geologic, observational and operational uncertainty. In our approach, we first conduct hundreds of simulations of a high-fidelity 3D computational model for CO2 injection into a deep saline aquifer, dominated by an anticline structure and a fault. This ensemble of realizations accounts for uncertainty in the model parameters (including fault geomechanical and rock properties) and observations (earthquake time, location and magnitude). We apply Gaussian processes (GP) to generate a valid surrogate that closely approximates the behavior of the high fidelity (and computationally intensive) model, and apply hyperparameter optimization and cross-validation techniques in the solution of this multidimensional data-fit problem. The net result of this process is the generation of a fast model that can be effectively used for Bayesian analysis. We then implement Markov chain Monte Carlo (MCMC) to determine the posterior distribution of the model uncertain parameters (given some prior distributions for those parameters and given the likelihood defined in this case by the GP model). Our results show that the resulting posterior distributions correctly converge towards the "true

  7. Resolving the coupled effects of hydrodynamics and DLVO forces on colloid attachment in porous media

    USDA-ARS?s Scientific Manuscript database

    Transport of colloidal particles in porous media is governed by the rate at which the colloids strike and stick to collector surfaces. Classic filtration theory has considered the influence of system hydrodynamics on determining the rate that colloids strike collector surfaces, but has neglected the...

  8. Coupling hydrodynamics with comoving frame radiative transfer. I. A unified approach for OB and WR stars

    NASA Astrophysics Data System (ADS)

    Sander, A. A. C.; Hamann, W.-R.; Todt, H.; Hainich, R.; Shenar, T.

    2017-07-01

    Context. For more than two decades, stellar atmosphere codes have been used to derive the stellar and wind parameters of massive stars. Although they have become a powerful tool and sufficiently reproduce the observed spectral appearance, they can hardly be used for more than measuring parameters. One major obstacle is their inconsistency between the calculated radiation field and the wind stratification due to the usage of prescribed mass-loss rates and wind-velocity fields. Aims: We present the concepts for a new generation of hydrodynamically consistent non-local thermodynamical equilibrium (non-LTE) stellar atmosphere models that allow for detailed studies of radiation-driven stellar winds. As a first demonstration, this new kind of model is applied to a massive O star. Methods: Based on earlier works, the PoWR code has been extended with the option to consistently solve the hydrodynamic equation together with the statistical equations and the radiative transfer in order to obtain a hydrodynamically consistent atmosphere stratification. In these models, the whole velocity field is iteratively updated together with an adjustment of the mass-loss rate. Results: The concepts for obtaining hydrodynamically consistent models using a comoving-frame radiative transfer are outlined. To provide a useful benchmark, we present a demonstration model, which was motivated to describe the well-studied O4 supergiant ζPup. The obtained stellar and wind parameters are within the current range of literature values. Conclusions: For the first time, the PoWR code has been used to obtain a hydrodynamically consistent model for a massive O star. This has been achieved by a profound revision of earlier concepts used for Wolf-Rayet stars. The velocity field is shaped by various elements contributing to the radiative acceleration, especially in the outer wind. The results further indicate that for more dense winds deviations from a standard β-law occur.

  9. Surface water, groundwater and unified 3D-crack network as a triple coupling dynamic system for a river watershed functioning - manifestation in catastrophic floods

    NASA Astrophysics Data System (ADS)

    Trifonova, Tatiana; Tulenev, Nikita; Trifonov, Dmitriy; Arakelian, Sergei

    2014-05-01

    1. Surface water and groundwater interaction model under conditions of huge level of precipitation in catastrophic floods and mudflows for mountain river watershed is introduced. Seismic processes and volcanic activity impact on the formation of disastrous floods due to dramatic change of the pressure field in groundwater horizons, is under discussion for such a triple coupling system, i.e. surface water - groundwater - crack network. Under the conception we analyze recent (2013) catastrophic water events: the catastrophic floods in Western Europe (May-June, 2013), in the Amur river basin, Russia/China (Aug.-Sept, 2013) and in Colorado, USA (Sept. 12-15,2013). In addition, a separate analysis is carried out for debris event in the Krimsk-city, Caucasus (Krasnodar) region, Russia (July 06-07, 2012). 2. There is a group of problems determined by dramatic discrepancies in water mass balance and other vital parameters, on the one hand, by estimation for different types of atmospheric precipitation (both torrential rain and continuous precipitations) and, on the other hand, for observable natural water events (i.e. catastrophic floods and/or mudflows/debris) on concrete territory. Analysis of many facts result in conclusion that we have the hard comparable/coincidence parameters under traditional conception for discussed events as an isolated/closed (river + rain) runoff-system. In contrast, the reasonable point of view does exist if we take into account the contribution of extra water source, which should be localized in river channel, i.e. functioning of open [(river + rain) + groundwater] flow-system has a principal meaning to understand the events occurrence. 3. The analysis and modeling for the events are carried out by us taking into account the following databases: (i) groundwater map dislocation, it resources and flow balance in studied areas, especially near the land surface being unstable in hydrological sense by many reasons, as well due to heavy rain

  10. Europeana and 3D

    NASA Astrophysics Data System (ADS)

    Pletinckx, D.

    2011-09-01

    The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  11. Assessing the Chemistry of Tidally Locked Earth-like Planets around M-type Stars Using a 3D Coupled Chemistry-Climate Model (CESM/WACCM)

    NASA Astrophysics Data System (ADS)

    Lanzano, Alexander

    2016-10-01

    Given recent discoveries there is a very real potential for tidally-locked Earth-like planets to exist orbiting M stars. To determine whether these planets may be habitable it is necessary to understand the nature of their atmospheres. In our investigation we simulate the evolution of present-day Earth while placed in tidally-locked orbit (meaning the same side of the planet always faces the star) around an M dwarf star. We are particularly interested in the evolution of the planet's ozone layer and whether it will shield the planet, and therefore life, from harmful radiation.To accomplish the above objectives we use a state-of-the-art 3-D terrestrial model, the Whole Atmosphere Community Climate Model (WACCM), which fully couples chemistry and climate, and therefore allows self-consistent simulations of atmospheric constituents and their effects on a planet's climate, surface radiation and thus habitability. Preliminary results show that this model is stable and that a tidally-locked Earth is protected from harmful UV radiation produced by G stars. The next step shall be to adapt this model for an M star by including its UV and visible spectrum.This investigation will both provide an insight into the potential for habitable exoplanets and further define the nature of the habitable zones for M class stars. We will also be able to narrow the definition of the habitable zones around distant stars, which will help us identify these planets in the future. Furthermore, this project will allow for a more thorough analysis of data from past and future exoplanet observing missions by defining the atmospheric composition of Earth-like planets around a variety of types of stars.

  12. Advanced Tsunami Numerical Simulations and Energy Considerations by use of 3D-2D Coupled Models: The October 11, 1918, Mona Passage Tsunami

    NASA Astrophysics Data System (ADS)

    López-Venegas, Alberto M.; Horrillo, Juan; Pampell-Manis, Alyssa; Huérfano, Victor; Mercado, Aurelio

    2015-06-01

    The most recent tsunami observed along the coast of the island of Puerto Rico occurred on October 11, 1918, after a magnitude 7.2 earthquake in the Mona Passage. The earthquake was responsible for initiating a tsunami that mostly affected the northwestern coast of the island. Runup values from a post-tsunami survey indicated the waves reached up to 6 m. A controversy regarding the source of the tsunami has resulted in several numerical simulations involving either fault rupture or a submarine landslide as the most probable cause of the tsunami. Here we follow up on previous simulations of the tsunami from a submarine landslide source off the western coast of Puerto Rico as initiated by the earthquake. Improvements on our previous study include: (1) higher-resolution bathymetry; (2) a 3D-2D coupled numerical model specifically developed for the tsunami; (3) use of the non-hydrostatic numerical model NEOWAVE (non-hydrostatic evolution of ocean WAVE) featuring two-way nesting capabilities; and (4) comprehensive energy analysis to determine the time of full tsunami wave development. The three-dimensional Navier-Stokes model tsunami solution using the Navier-Stokes algorithm with multiple interfaces for two fluids (water and landslide) was used to determine the initial wave characteristic generated by the submarine landslide. Use of NEOWAVE enabled us to solve for coastal inundation, wave propagation, and detailed runup. Our results were in agreement with previous work in which a submarine landslide is favored as the most probable source of the tsunami, and improvement in the resolution of the bathymetry yielded inundation of the coastal areas that compare well with values from a post-tsunami survey. Our unique energy analysis indicates that most of the wave energy is isolated in the wave generation region, particularly at depths near the landslide, and once the initial wave propagates from the generation region its energy begins to stabilize.

  13. The impact of calving front retreat on Jakobshavn Isbræ, West Greenland , using a 3D thermodynamically coupled numerical model

    NASA Astrophysics Data System (ADS)

    Bondzio, J. H.; Seroussi, H. L.; Morlighem, M.; Kleiner, T.; Rückamp, M.; Larour, E. Y.; Humbert, A.

    2016-12-01

    Jakobshavn Isbræ is a major marine terminating outlet glacier of the Greenland Ice Sheet. Since the breakup of its floating ice tongue in the late 1990's, the glacier has been thinning, accelerating and its calving front has been retreating by about 20 km. It is currently a major contributor to global sea level rise. Understanding the processes involved in and driving these changes is important to improve the predictive skills of numerical models and improve estimates of future dynamic ice discharge of the Greenland Ice Sheet. However, the limited amount of observations when the glacier underwent these strong changes does not allow us to fully understand the interplay and significance of the processes involved. Numerical modelling can be used to improve our understanding, but ice flow model studies so far suffered from lacking technical capabilities, poorly constrained input data sets and insufficient computational resources. Here, we use the Ice Sheet System Model (ISSM) to perform, for the first time, a high-resolution, 3D thermodynamically coupled model study of Jakobshavn Isbræ with a dynamically evolving ice front. We perform several sensitivity studies by analyzing the influence of submarine melt, calving and thermal regime on the glacier's thermodynamics to determine the processes that control the response of the glacier to climate change. We find that increased submarine melt significantly contributed to the initial speed-up of the glacier, but that today's flow regime is almost entirely controlled by it's calving front position, which agrees well with observations. The glacier's acceleration causes a substantial increase in internal and basal friction, which increases subglacial melt rates. Sustained higher submarine discharge might increase undercutting of the calving front through melt, leading to higher calving rates even in case of a glacier slow down, creating a potential positive feedback.

  14. Development and evaluation of a coupled hydrodynamic (FVCOM) and water quality model (CE-QUAL-ICM)

    SciTech Connect

    Kim, Taeyun; Labiosa, Rochelle G.; Khangaonkar, Tarang; Yang, Zhaoqing; Chen, Changsheng; Qi, Jianhua; Cerco, Carl

    2010-01-08

    Recent and frequent fish-kills in waters otherwise known for their pristine high quality, created increased awareness and urgent concern regarding potential for degradation of water quality in Puget Sound through coastal eutrophication caused by increased nutrient loading. Following a detailed review of leading models and tools available in public domain, FVCOM and CE-QUAL-ICM models were selected to conduct hydrodynamic and water quality simulations for the fjordal waters of Puget Sound.

  15. Coupling between Hydrodynamics, Acoustics, and Heat Release in a Self-Excited Unstable Combustor

    DTIC Science & Technology

    2015-04-07

    Averaged Navier-Stokes) of a non- premixed, high -pressure laboratory combustor that produces self-excited longitudinal instabilities . The main...acoustic excitation.13 Such hydrodynamic instabilities arising when pressure pulses reflecting from the downstream end of the flow domain lock on to an...spatio- temporal observation of the combustion field. High - speed imagery of the CH* radical showed clear changes in the unsteady combustion field as

  16. TPCI: the PLUTO-CLOUDY Interface . A versatile coupled photoionization hydrodynamics code

    NASA Astrophysics Data System (ADS)

    Salz, M.; Banerjee, R.; Mignone, A.; Schneider, P. C.; Czesla, S.; Schmitt, J. H. M. M.

    2015-04-01

    We present an interface between the (magneto-) hydrodynamics code PLUTO and the plasma simulation and spectral synthesis code CLOUDY. By combining these codes, we constructed a new photoionization hydrodynamics solver: the PLUTO-CLOUDY Interface (TPCI), which is well suited to simulate photoevaporative flows under strong irradiation. The code includes the electromagnetic spectrum from X-rays to the radio range and solves the photoionization and chemical network of the 30 lightest elements. TPCI follows an iterative numerical scheme: first, the equilibrium state of the medium is solved for a given radiation field by CLOUDY, resulting in a net radiative heating or cooling. In the second step, the latter influences the (magneto-) hydrodynamic evolution calculated by PLUTO. Here, we validated the one-dimensional version of the code on the basis of four test problems: photoevaporation of a cool hydrogen cloud, cooling of coronal plasma, formation of a Strömgren sphere, and the evaporating atmosphere of a hot Jupiter. This combination of an equilibrium photoionization solver with a general MHD code provides an advanced simulation tool applicable to a variety of astrophysical problems. A copy of the code is available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (ftp://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/576/A21

  17. Viscous Analysis of Pulsating Hydrodynamic Instability and Thermal Coupling Liquid-Propellant Combustion

    NASA Technical Reports Server (NTRS)

    Margolis, Stephen B.; Sacksteder, Kurt (Technical Monitor)

    2000-01-01

    A pulsating form of hydrodynamic instability has recently been shown to arise during liquid-propellant deflagration in those parameter regimes where the pressure-dependent burning rate is characterized by a negative pressure sensitivity. This type of instability can coexist with the classical cellular, or Landau form of hydrodynamic instability, with the occurrence of either dependent on whether the pressure sensitivity is sufficiently large or small in magnitude. For the inviscid problem, it has been shown that, when the burning rate is realistically allowed to depend on temperature as well as pressure, sufficiently large values of the temperature sensitivity relative to the pressure sensitivity causes like pulsating form of hydrodynamic instability to become dominant. In that regime, steady, planar burning becomes intrinsically unstable to pulsating disturbances whose wave numbers are sufficiently small. This analysis is extended to the fully viscous case, where it is shown that although viscosity is stabilizing for intermediate and larger wave number perturbations, the intrinsic pulsating instability for small wave numbers remains. Under these conditions, liquid-propellant combustion is predicted to be characterized by large unsteady cells along the liquid/gas interface.

  18. Exact scaling solution of the mode coupling equations for non-linear fluctuating hydrodynamics in one dimension

    NASA Astrophysics Data System (ADS)

    Popkov, V.; Schadschneider, A.; Schmidt, J.; Schütz, G. M.

    2016-09-01

    We obtain the exact solution of the one-loop mode-coupling equations for the dynamical structure function in the framework of non-linear fluctuating hydrodynamics in one space dimension for the strictly hyperbolic case where all characteristic velocities are different. All solutions are characterized by dynamical exponents which are Kepler ratios of consecutive Fibonacci numbers, which includes the golden mean as a limiting case. The scaling form of all higher Fibonacci modes are asymmetric Lévy-distributions. Thus a hierarchy of new dynamical universality classes is established. We also compute the precise numerical value of the Prähofer-Spohn scaling constant to which scaling functions obtained from mode coupling theory are sensitive.

  19. 3D radiative transfer in colliding wind binaries: Application of the SimpleX algorithm to 3D SPH simulations

    NASA Astrophysics Data System (ADS)

    Madura, Thomas; Clementel, Nicola; Kruip, Chael; Icke, Vincent; Gull, Theodore

    2014-09-01

    We present the first results of full 3D radiative transfer simulations of the colliding stellar winds in a massive binary system. We accomplish this by applying the SIMPLEX algorithm for 3D radiative transfer on an unstructured Delaunay grid to recent 3D smoothed particle hydrodynamics (SPH) simulations of the colliding winds in the binary system η Carinae. We use SIMPLEX to obtain detailed ionization fractions of hydrogen and helium, in 3D, at the resolution of the original SPH simulations. We show how the SIMPLEX simulations can be used to generate synthetic spectral data cubes for comparison to data obtained with the Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph as part of a multi-cycle program to map changes in η Car's extended interacting wind structures across one binary cycle. Comparison of the HST observations to the SIMPLEX models can help lead to more accurate constraints on the orbital, stellar, and wind parameters of the η Car system, such as the primary's mass-loss rate and the companion's temperature and luminosity. While we initially focus specifically on the η Car binary, the numerical methods employed can be applied to numerous other colliding wind (WR140, WR137, WR19) and dusty 'pinwheel' (WR104, WR98a) binary systems. One of the biggest remaining mysteries is how dust can form and survive in such systems that contain a hot, luminous O star. Coupled with 3D hydrodynamical simulations, SIMPLEX simulations have the potential to help determine the regions where dust can form and survive in these unique objects.

  20. A 3d-3d appetizer

    NASA Astrophysics Data System (ADS)

    Pei, Du; Ye, Ke

    2016-11-01

    We test the 3d-3d correspondence for theories that are labeled by Lens spaces. We find a full agreement between the index of the 3d N=2 "Lens space theory" T [ L( p, 1)] and the partition function of complex Chern-Simons theory on L( p, 1). In particular, for p = 1, we show how the familiar S 3 partition function of Chern-Simons theory arises from the index of a free theory. For large p, we find that the index of T[ L( p, 1)] becomes a constant independent of p. In addition, we study T[ L( p, 1)] on the squashed three-sphere S b 3 . This enables us to see clearly, at the level of partition function, to what extent G ℂ complex Chern-Simons theory can be thought of as two copies of Chern-Simons theory with compact gauge group G.

  1. 3d-3d correspondence revisited

    DOE PAGES

    Chung, Hee -Joong; Dimofte, Tudor; Gukov, Sergei; ...

    2016-04-21

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d N = 2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. As a result, we also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  2. 3d-3d correspondence revisited

    SciTech Connect

    Chung, Hee -Joong; Dimofte, Tudor; Gukov, Sergei; Sułkowski, Piotr

    2016-04-21

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d N = 2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. As a result, we also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  3. Coupling Kinetic and Hydrodynamic Models for Simulations of Gas Flows and Weakly Ionized Plasmas

    NASA Astrophysics Data System (ADS)

    Kolobov, V. I.; Arslanbekov, R. R.

    2011-10-01

    This paper presents adaptive kinetic/fluid models for simulations of gases and weakly ionized plasmas. We first describe a Unified Flow Solver (UFS), which combines Adaptive Mesh Refinement with automatic selection of kinetic or hydrodynamic models for different parts of flows. This Adaptive Mesh and Algorithm Refinement (AMAR) technique limits expensive atomistic-scale solutions only to the regions where they are needed. We present examples of plasma simulations with fluid models and describe kinetic solvers for electrons which are currently being incorporated into AMAR techniques for plasma simulations.

  4. Experiments performed with bubbly flow in vertical pipes at different flow conditions covering the transition region: simulation by coupling Eulerian, Lagrangian and 3D random walks models

    NASA Astrophysics Data System (ADS)

    Muñoz-Cobo, José; Chiva, Sergio; El Aziz Essa, Mohamed; Mendes, Santos

    2012-08-01

    Two phase flow experiments with different superficial velocities of gas and water were performed in a vertical upward isothermal cocurrent air-water flow column with conditions ranging from bubbly flow, with very low void fraction, to transition flow with some cap and slug bubbles and void fractions around 25%. The superficial velocities of the liquid and the gas phases were varied from 0.5 to 3 m/s and from 0 to 0.6 m/s, respectively. Also to check the effect of changing the surface tension on the previous experiments small amounts of 1-butanol were added to the water. These amounts range from 9 to 75 ppm and change the surface tension. This study is interesting because in real cases the surface tension of the water diminishes with temperature, and with this kind of experiments we can study indirectly the effect of changing the temperature on the void fraction distribution. The following axial and radial distributions were measured in all these experiments: void fraction, interfacial area concentration, interfacial velocity, Sauter mean diameter and turbulence intensity. The range of values of the gas superficial velocities in these experiments covered the range from bubbly flow to the transition to cap/slug flow. Also with transition flow conditions we distinguish two groups of bubbles in the experiments, the small spherical bubbles and the cap/slug bubbles. Special interest was devoted to the transition region from bubbly to cap/slug flow; the goal was to understand the physical phenomena that take place during this transition A set of numerical simulations of some of these experiments for bubbly flow conditions has been performed by coupling a Lagrangian code, that tracks the three dimensional motion of the individual bubbles in cylindrical coordinates inside the field of the carrier liquid, to an Eulerian model that computes the magnitudes of continuous phase and to a 3D random walk model that takes on account the fluctuation in the velocity field of the

  5. Hybrid Approaches for Simulation of Coastal Hydrodynamics --- Coupling of FVCOM/CFD and FVCOM/Shallow Water Model

    NASA Astrophysics Data System (ADS)

    Tang, H.; Wu, X.; Cheng, W.; Skraatz, S.

    2010-12-01

    As a consequence of many emerging issues such as the catastrophic Gulf of Mexico oil spill and potential coastline flooding due to sea level rise, there is an urgent need to develop our capabilities to predict small-scale and really 3D phenomena. In order to meet the need, we propose hybrid approaches and domain decomposition to couple different models designed for different physics and scales. In this presentation, a computational fluid dynamics (CFD) and FVCOM are coupled to simulate small-scale flow problems in coastal settings. The former is used to capture local flows, and the latter is employed to compute the large-scale background currents. In addition, a 2D shallow water model is coupled with FVCOM. In this situation, the 2D model is utilized to predict coastline flows and FVCOM is applied to simulate the deep water currents. The hybrid approaches are realized using two-way coupling and Chimera overset grids. Two numerical examples, which correspond to the two types of coupling, will be discussed. The first example is a thermal discharge from a multiport diffuser at the seabed, each of the ports is 10 cm in diameters, into estuary with sizes in hundreds of kilometers (Fig. 1a and b). The second example is flooding into lands and urban areas. The results clearly illustrate the feasibility and potential of the proposed approaches in prediction of multi-physics/multi-scale coastal ocean flows. Difficulty and unresolved issues will be discussed also. Fig. 1a FVCOM mesh. The discharge is located at mouth of Hudson next to NYC Fig. 1b Simulated 3D thermal plume of the discharge

  6. Using a coupled eco-hydrodynamic model to predict habitat for target species following dam removal

    USGS Publications Warehouse

    Tomsic, C.A.; Granata, T.C.; Murphy, R.P.; Livchak, C.J.

    2007-01-01

    A habitat suitability index (HSI) model was developed for a water quality sensitive fish (Greater Redhorse) and macroinvertebrate (Plecoptera) species to determine the restoration success of the St. John Dam removal for the Sandusky River (Ohio). An ArcGIS?? model was created for pre- and post-dam removal scenarios. Inputs to the HSI model consist of substrate distributions from river surveys, and water level and velocity time series, outputs from a hydrodynamic model. The ArcGIS?? model predicted habitat suitability indices at 45 river cross-sections in the hydrodynamic model. The model was programmed to produce polygon layers, using graphical user interfaces that were displayed in the ArcGIS?? environment. The results of the model clearly show an increase of habitat suitability from pre- to post-dam removal periods and in the former reservoir. The change in suitability of the model is attributed mostly to the change in depth in the river following the dam removal for both the fish and invertebrate species. The results of the invertebrate model followed the same positive trend as species enumerations from the river basin. ?? 2007 Elsevier B.V. All rights reserved.

  7. Quantification of Coupled Stiffness and Fiber Orientation Remodeling in Hypertensive Rat Right-Ventricular Myocardium Using 3D Ultrasound Speckle Tracking with Biaxial Testing

    PubMed Central

    Park, Dae Woo; Sebastiani, Andrea; Yap, Choon Hwai; Simon, Marc A.; Kim, Kang

    2016-01-01

    Mechanical and structural changes of right ventricular (RV) in response to pulmonary hypertension (PH) are inadequately understood. While current standard biaxial testing provides information on the mechanical behavior of RV tissues using surface markers, it is unable to fully assess structural and mechanical properties across the full tissue thickness. In this study, the mechanical and structural properties of normotensive and pulmonary hypertension right ventricular (PHRV) myocardium through its full thickness were examined using mechanical testing combined with 3D ultrasound speckle tracking (3D-UST). RV pressure overload was induced in Sprague–Dawley rats by pulmonary artery (PA) banding. The second Piola–Kirchhoff stress tensors and Green-Lagrangian strain tensors were computed in the RV myocardium using the biaxial testing combined with 3D-UST. A previously established non-linear curve-fitting algorithm was applied to fit experimental data to a Strain Energy Function (SEF) for computation of myofiber orientation. The fiber orientations obtained by the biaxial testing with 3D-UST compared well with the fiber orientations computed from the histology. In addition, the re-orientation of myofiber in the right ventricular free wall (RVFW) along longitudinal direction (apex-to-outflow-tract direction) was noticeable in response to PH. For normotensive RVFW samples, the average fiber orientation angles obtained by 3D-UST with biaxial test spiraled from 20° at the endo-cardium to -42° at the epi-cardium (Δ = 62°). For PHRV samples, the average fiber orientation angles obtained by 3D-UST with biaxial test had much less spiral across tissue thickness: 3° at endo-cardium to -7° at epi-cardium (Δ = 10°, P<0.005 compared to normotensive). PMID:27780271

  8. 3D and Education

    NASA Astrophysics Data System (ADS)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  9. A coupled wave-hydrodynamic model of a highly frictional atoll reef system: mechanisms for flow, connectivity, and ecological implications

    NASA Astrophysics Data System (ADS)

    Rogers, J.; Monismith, S. G.; Fringer, O. B.; Koweek, D.; Dunbar, R. B.

    2016-12-01

    We present a hydrodynamic analysis of an atoll system from modeling simulations using a coupled wave and three-dimensional hydrodynamic model (COAWST) applied to Palmyra Atoll in the Central Pacific. This is the first time the vortex force formalism has been applied in a highly frictional reef environment. The model results agree well with field observations considering the model complexity in terms of bathymetry, bottom roughness, and forcing (waves, wind, metrological, tides, regional boundary conditions), and open boundary conditions. At the atoll scale, strong regional flows create flow separation and a well-defined wake, similar to 2D flow past a cylinder. Circulation within the atoll is typically forced by waves and tides, with strong waves from the north driving flow from north to south across the atoll, and from east to west through the lagoon system. Bottom stress is significant for depths less than about 60 m, and in addition to the model bathymetry, is important for correct representation of flow in the model. Connectivity within the atoll system shows that the general trends follow the mean flow paths. However, some connectivity exists between all regions of the atoll system due to nonlinear processes such as eddies and tidal phasing. While high mean flow and travel time less than 20 hours appears to differentiate very productive coral regions, low temperature and moderate wave stress appear to be the most ideal conditions for high coral cover on Palmyra.

  10. A coupled wave-hydrodynamic model of an atoll with high friction: Mechanisms for flow, connectivity, and ecological implications

    NASA Astrophysics Data System (ADS)

    Rogers, Justin S.; Monismith, Stephen G.; Fringer, Oliver B.; Koweek, David A.; Dunbar, Robert B.

    2017-02-01

    We present a hydrodynamic analysis of an atoll system from modeling simulations using a coupled wave and three-dimensional hydrodynamic model (COAWST) applied to Palmyra Atoll in the Central Pacific. This is the first time the vortex force formalism has been applied in a highly frictional reef environment. The model results agree well with field observations considering the model complexity in terms of bathymetry, bottom roughness, and forcing (waves, wind, metrological, tides, regional boundary conditions), and open boundary conditions. At the atoll scale, strong regional flows create flow separation and a well-defined wake, similar to 2D flow past a cylinder. Circulation within the atoll is typically forced by waves and tides, with strong waves from the north driving flow from north to south across the atoll, and from east to west through the lagoon system. Bottom stress is significant for depths less than about 60 m, and in addition to the model bathymetry, is important for correct representation of flow in the model. Connectivity within the atoll system shows that the general trends follow the mean flow paths. However, some connectivity exists between all regions of the atoll system due to nonlinear processes such as eddies and tidal phasing. Moderate wave stress, short travel time (days since entering the reef system), and low temperature appear to be the most ideal conditions for high coral cover at this site.

  11. Refined 3d-3d correspondence

    NASA Astrophysics Data System (ADS)

    Alday, Luis F.; Genolini, Pietro Benetti; Bullimore, Mathew; van Loon, Mark

    2017-04-01

    We explore aspects of the correspondence between Seifert 3-manifolds and 3d N = 2 supersymmetric theories with a distinguished abelian flavour symmetry. We give a prescription for computing the squashed three-sphere partition functions of such 3d N = 2 theories constructed from boundary conditions and interfaces in a 4d N = 2∗ theory, mirroring the construction of Seifert manifold invariants via Dehn surgery. This is extended to include links in the Seifert manifold by the insertion of supersymmetric Wilson-'t Hooft loops in the 4d N = 2∗ theory. In the presence of a mass parameter cfor the distinguished flavour symmetry, we recover aspects of refined Chern-Simons theory with complex gauge group, and in particular construct an analytic continuation of the S-matrix of refined Chern-Simons theory.

  12. Protein Simulations in Fluids: Coupling the OPEP Coarse-Grained Force Field with Hydrodynamics.

    PubMed

    Sterpone, Fabio; Derreumaux, Philippe; Melchionna, Simone

    2015-04-14

    A novel simulation framework that integrates the OPEP coarse-grained (CG) model for proteins with the Lattice Boltzmann (LB) methodology to account for the fluid solvent at mesoscale level is presented. OPEP is a very efficient, water-free and electrostatic-free force field that reproduces at quasi-atomistic detail processes like peptide folding, structural rearrangements, and aggregation dynamics. The LB method is based on the kinetic description of the solvent in order to solve the fluid mechanics under a wide range of conditions, with the further advantage of being highly scalable on parallel architectures. The capabilities of the approach are presented, and it is shown that the strategy is effective in exploring the role of hydrodynamics on protein relaxation and peptide aggregation. The end result is a strategy for modeling systems of thousands of proteins, such as in the case of dense protein suspensions. The future perspectives of the multiscale approach are also discussed.

  13. Synchronization and Collective Dynamics of Flagella and Cilia as Hydrodynamically Coupled Oscillators

    NASA Astrophysics Data System (ADS)

    Uchida, Nariya; Golestanian, Ramin; Bennett, Rachel R.

    2017-10-01

    Cooperative motion of flagella and cilia faciliates swimming of microorganisms and material transport in the body of multicellular organisms. Using minimal models, we address the roles of hydrodynamic interaction in synchronization and collective dynamics of flagella and cilia. Collective synchronization of bacterial flagella is studied with a model of bacterial carpets. Cilia and eukaryotic flagella are characterized by periodic modulation of their driving forces, which produces various patterns of two-body synchronization and metachronal waves. Long-range nature of the interaction introduces novel features in the dynamics of these model systems. The flagella of a swimmer synchronize also by a viscous drag force mediated through the swimmer's body. Recent advance in experimental studies of the collective dynamics of flagella, cilia and related artificial systems are summarized.

  14. Linear response of hydrodynamically-coupled particles under a nonequilibrium reservoir

    NASA Astrophysics Data System (ADS)

    Yolcu, Cem; Baiesi, Marco

    2016-03-01

    A recent experiment driving colloids electromagnetically, by Bérut et al 2014 Europhys. Lett. 107 60004, is an ideal paradigm for illustrating a linear response theory for nonequilibrium overdamped systems including hydrodynamic interactions and, unusually, a reservoir itself out of equilibrium. Indeed, in this setup one finds a nonequilibrium environment in which the mobility and diffusivity of free particles are not simply proportional to each other. We derive both the response to a mechanical forcing and to temperature variations in terms of correlations between an observable and a path-weight action. The time-antisymmetric component of the latter turns out not to be simply proportional to the heat flowing into the environment. These results are visualized with simulations resembling conditions and protocols easily realizable in the experiment, thereby tracing a path for experimental verifications of the theory.

  15. A 3d-3d appetizer

    DOE PAGES

    Pei, Du; Ye, Ke

    2016-11-02

    Here, we test the 3d-3d correspondence for theories that are labeled by Lens spaces. We find a full agreement between the index of the 3d N=2 “Lens space theory” T [L(p, 1)] and the partition function of complex Chern-Simons theory on L(p, 1). In particular, for p = 1, we show how the familiar S3 partition function of Chern-Simons theory arises from the index of a free theory. For large p, we find that the index of T[L(p, 1)] becomes a constant independent of p. In addition, we study T[L(p, 1)] on the squashed three-sphere Sb3. This enables us tomore » see clearly, at the level of partition function, to what extent GC complex Chern-Simons theory can be thought of as two copies of Chern-Simons theory with compact gauge group G.« less

  16. A 3d-3d appetizer

    SciTech Connect

    Pei, Du; Ye, Ke

    2016-11-02

    Here, we test the 3d-3d correspondence for theories that are labeled by Lens spaces. We find a full agreement between the index of the 3d N=2 “Lens space theory” T [L(p, 1)] and the partition function of complex Chern-Simons theory on L(p, 1). In particular, for p = 1, we show how the familiar S3 partition function of Chern-Simons theory arises from the index of a free theory. For large p, we find that the index of T[L(p, 1)] becomes a constant independent of p. In addition, we study T[L(p, 1)] on the squashed three-sphere Sb3. This enables us to see clearly, at the level of partition function, to what extent GC complex Chern-Simons theory can be thought of as two copies of Chern-Simons theory with compact gauge group G.

  17. Coupled Modeling of Flow, Transport, and Deformation during Hydrodynamically Unstable Displacement in Fractured Rocks

    NASA Astrophysics Data System (ADS)

    Jha, B.; Juanes, R.

    2015-12-01

    Coupled processes of flow, transport, and deformation are important during production of hydrocarbons from oil and gas reservoirs. Effective design and implementation of enhanced recovery techniques such as miscible gas flooding and hydraulic fracturing requires modeling and simulation of these coupled proceses in geologic porous media. We develop a computational framework to model the coupled processes of flow, transport, and deformation in heterogeneous fractured rock. We show that the hydrocarbon recovery efficiency during unstable displacement of a more viscous oil with a less viscous fluid in a fractured medium depends on the mechanical state of the medium, which evolves due to permeability alteration within and around fractures. We show that fully accounting for the coupling between the physical processes results in estimates of the recovery efficiency in agreement with observations in field and lab experiments.

  18. Consistency between 2D-3D Sediment Transport models

    NASA Astrophysics Data System (ADS)

    Villaret, Catherine; Jodeau, Magali

    2017-04-01

    Sediment transport models have been developed and applied by the engineering community to estimate transport rates and morphodynamic bed evolutions in river flows, coastal and estuarine conditions. Environmental modelling systems like the open-source Telemac modelling system include a hierarchy of models from 1D (Mascaret), 2D (Telemac-2D/Sisyphe) and 3D (Telemac-3D/Sedi-3D) and include a wide range of processes to represent sediment flow interactions under more and more complex situations (cohesive, non-cohesive and mixed sediment). Despite some tremendous progresses in the numerical techniques and computing resources, the quality/accuracy of model results mainly depend on the numerous choices and skills of the modeler. In complex situations involving stratification effects, complex geometry, recirculating flows… 2D model assumptions are no longer valid. A full 3D turbulent flow model is then required in order to capture the vertical mixing processes and to represent accurately the coupled flow/sediment distribution. However a number of theoretical and numerical difficulties arise when dealing with sediment transport modelling in 3D which will be high-lighted : (1) Dependency of model results to the vertical grid refinement and choice of boundary conditions and numerical scheme (2) The choice of turbulence model determines also the sediment vertical distribution which is governed by a balance between the downward settling term and upward turbulent diffusion. (3) The use of different numerical schemes for both hydrodynamics (mean and turbulent flow) and sediment transport modelling can lead to some inconsistency including a mismatch in the definition of numerical cells and definition of boundary conditions. We discuss here those present issues and present some detailed comparison between 2D and 3D simulations on a set of validation test cases which are available in the Telemac 7.2 release using both cohesive and non-cohesive sediments.

  19. Assessing the impact of spatial resolution of flexible meshes on discharge and inundation estimates from spatially coupled hydrologic-hydrodynamic models

    NASA Astrophysics Data System (ADS)

    Hoch, Jannis; van Beek, Rens; Winsemius, Hessel; Bierkens, Marc

    2017-04-01

    In recent years, losses due to riverine inundations have been increasing due to growth of both population and asset values in floodplain areas as well as changes in river regimes. As global flood risk will even increase in the future, it is paramount for the scientific community to provide sound flood hazard, exposure, and vulnerability estimates for improved flood risk management. Since inundations are a large-scale hazard, two main requirements for modelling efforts can be formulated. First, large-scale models need to be applied to capture the spatial correlation of flood events in neighbouring river basins, and second, modelling approaches need to be able to simulate future climate conditions and the resulting hydrologic response. Both requirements can be met by employing global hydrologic models (GHM). Obtaining the required information from GHM at a locally relevant resolution, however, remains a major research challenge. For instance, the coarse spatial resolution of such models hampers a detailed representation of channel and floodplain geometry, and simplistic routing schemes implemented often fail to capture discharge dynamics. In addition to other current approaches trying to overcome these issues, Hoch et al. (2016, in review) applied a spatially explicit coupling scheme between the global hydrologic model PCR-GLOBWB and the hydrodynamic model Delft3D Flexible Mesh. Two main features are central to this study. First, the water balance computations were performed by PCR-GLOBWB, while the routing was explicitly performed by FM solving the full shallow water equations. Results indeed showed that such a spatial coupling approach can simulate discharge more accurately than both models stand-alone. Second, the model domain was schematized by a flexible mesh which allows for smaller grids for areas such as channel and floodplain areas while preserving coarser spatial resolution in more remote areas. As a result, computational costs can be strongly reduced

  20. Measurements of the Conduction-Zone Length and Mass Ablation Rate to Study the Hydrodynamic Coupling in Cryogenic Direct-Drive Implosions on OMEGA

    NASA Astrophysics Data System (ADS)

    Michel, D. T.; Davis, A. K.; Goncharov, V. N.; Regan, S. P.; Sangster, T. C.; Epstein, R.; Hu, S. X.; Igumenshchev, I. V.; Meyerhofer, D. D.; Seka, W.; Froula, D. H.

    2015-11-01

    The ablation-front trajectory and the averaged mass ablation rate is measured in direct-drive cryogenic target implosions on the OMEGA Laser System by imaging the soft x rays emitted by the coronal plasma. The length of the conduction zone is determined by coupling x-ray and scattered-light measurements. These measurements are compared to hydrodynamic simulations to study the modeling of the hydrodynamic coupling for various beam and target radii. Reducing the beam focal-spot radius relative to the target radius is a method that is being studied to reduce cross-beam energy transfer and increase the hydrodynamic efficiency. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944.

  1. 3D Imaging.

    ERIC Educational Resources Information Center

    Hastings, S. K.

    2002-01-01

    Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)

  2. 3D Imaging.

    ERIC Educational Resources Information Center

    Hastings, S. K.

    2002-01-01

    Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)

  3. Diamond in 3-D

    NASA Image and Video Library

    2004-08-20

    This 3-D, microscopic imager mosaic of a target area on a rock called Diamond Jenness was taken after NASA Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time. 3D glasses are necessary.

  4. Coupled effects of hydrodynamics and biogeochemistry on Zn mobility and speciation in highly contaminated sediments.

    PubMed

    Xie, Minwei; Jarrett, Brooke A; Da Silva-Cadoux, Cécile; Fetters, Kyle J; Burton, G Allen; Gaillard, Jean-François; Packman, Aaron I

    2015-05-05

    Porewater transport and diagenetic reactions strongly regulate the mobility of metals in sediments. We executed a series of laboratory experiments in Gust chamber mesocosms to study the effects of hydrodynamics and biogeochemical transformations on the mobility and speciation of Zn in contaminated sediments from Lake DePue, IL. X-ray absorption spectroscopy (XAS) indicated that the oxidation of surficial sediments promoted the formation of more mobile Zn species. Bulk chemical measurements of porewater, overlying water, and sediment also suggested that this process liberated aqueous metals to porewater and facilitated Zn efflux to the overlying water. In addition, sediment resuspension events increased the release of aqueous metals to both surficial porewater and the overlying water column. XAS analysis indicated that resuspension increased dissolution of Zn-sequestering mineral phases. These results show that both steady slow porewater transport and rapid episodic resuspension are important to the release of metal from fine-grained, low-permeability contaminated sediments. Thus, information on metals speciation and mobility under time-varying overlying flow conditions is essential to understanding the long-term behavior of metals in contaminated sediments.

  5. Cilia Internal Mechanism and Metachronal Coordination as the Result of Hydrodynamical Coupling

    NASA Astrophysics Data System (ADS)

    Gueron, Shay; Levit-Gurevich, Konstantin; Liron, Nadav; Blum, Jacob J.

    1997-06-01

    We present a simple but realistic model for the internal bend-generating mechanism of cilia, using parameters obtained from the analysis of data of the beat of a single cilium, and incorporate it into a recently developed dynamical model. Comparing the results to experimental data for two-dimensional beats, we demonstrate that the model captures the essential features of the motion, including many properties that are not built in explicitly. The beat pattern and frequency change in response to increased viscosity and the presence of neighboring cilia in a realistic fashion. Using the model, we are able to investigate multicilia configurations such as rows of cilia and two-dimensional arrays of cilia. When two adjacent model cilia start beating at different phase, they synchronize within two cycles, as observed in experiments in which two flagella beating out of phase are brought close together. Examination of various multicilia configurations shows that metachronal patterns (i.e., beats with a constant phase difference between neighboring cilia) evolve autonomously. This provides modeling evidence in support of the conjecture that metachronism may occur as a self-organized phenomenon due to hydrodynamical interactions between the cilia.

  6. Thermomechanically coupled conduction mode laser welding simulations using smoothed particle hydrodynamics

    NASA Astrophysics Data System (ADS)

    Hu, Haoyue; Eberhard, Peter

    2016-10-01

    Process simulations of conduction mode laser welding are performed using the meshless Lagrangian smoothed particle hydrodynamics (SPH) method. The solid phase is modeled based on the governing equations in thermoelasticity. For the liquid phase, surface tension effects are taken into account to simulate the melt flow in the weld pool, including the Marangoni force caused by a temperature-dependent surface tension gradient. A non-isothermal solid-liquid phase transition with the release or absorption of additional energy known as the latent heat of fusion is considered. The major heat transfer through conduction is modeled, whereas heat convection and radiation are neglected. The energy input from the laser beam is modeled as a Gaussian heat source acting on the initial material surface. The developed model is implemented in Pasimodo. Numerical results obtained with the model are presented for laser spot welding and seam welding of aluminum and iron. The change of process parameters like welding speed and laser power, and their effects on weld dimensions are investigated. Furthermore, simulations may be useful to obtain the threshold for deep penetration welding and to assess the overall welding quality. A scalability and performance analysis of the implemented SPH algorithm in Pasimodo is run in a shared memory environment. The analysis reveals the potential of large welding simulations on multi-core machines.

  7. Protein simulations in fluids: coupling the OPEP coarse-grained force field with hydrodynamics

    PubMed Central

    Sterpone, Fabio; Derreumaux, Philippe; Melchionna, Simone

    2017-01-01

    A novel simulation framework that integrates the OPEP coarse-grained (CG) model for proteins with the Lattice Boltzmann (LB) methodology to account for the fluid solvent at mesoscale level, is presented. OPEP is a very efficient, water-free and electrostatic-free force field that reproduces at quasi-atomistic detail processes like peptide folding, structural rearrangements and aggregation dynamics. The LB method is based on the kinetic description of the solvent in order to solve the fluid mechanics under a wide range of conditions, with the further advantage of being highly scalable on parallel architectures. The capabilities of the approach are presented and it is shown that the strategy is effective in exploring the role of hydrodynamics on protein relaxation and peptide aggregation. The end result is a strategy for modelling systems made up to thousands of proteins, such as in the case of dense protein suspensions. The future perspectives of the multi-scale approach are also discussed. PMID:26574390

  8. Estimating cyanobacterial bloom transport by coupling remotely sensed imagery and a hydrodynamic model.

    PubMed

    Wynne, Timothy T; Stumpf, Richard P; Tomlinson, Michelle C; Schwab, David J; Watabayashi, Glen Y; Christensen, John D

    2011-10-01

    The ability to forecast the transport of harmful cyanobacterial blooms in the Laurentian Great Lakes is beneficial to natural resource managers concerned with public health. This manuscript describes a method that improves the prediction of cyanobacterial bloom transport with the use of a preoperational hydrodynamic model and high temporal resolution satellite imagery. Two scenarios were examined from separate cyanobacterial blooms in western Lake Erie, USA. The first scenario modeled bloom position and extent over the span of 13 days. A geographic center, or centroid, was calculated and assigned to the bloom from observed satellite imagery. The bloom centroid was projected forward in time, and the projected position was compared to the final observed bloom centroid. Image pixels flagged as cyanobacterial bloom were compared between the initial image and the final image, and this was assumed as persistence. The second bloom scenario was modeled for a period of 12 days, and the results were framed in an ecological context in an effort to gain further understanding of cyanobacterial bloom dynamics. These modeling techniques can be incorporated into an operational forecasting system.

  9. The role of 3D-hydraulics in habitat modelling of hydropeaking events.

    PubMed

    Pisaturo, Giuseppe Roberto; Righetti, Maurizio; Dumbser, Michael; Noack, Markus; Schneider, Matthias; Cavedon, Valentina

    2017-01-01

    One way to study ecological implications induced by hydropeaking represents the coupling of hydrodynamic models with habitat suitability models, in which hydrodynamic parameters are typically used to describe the physical habitat of indicator species. This article discusses the differences in habitat suitability assessment between 2D and 3D CFD modelling as input for the habitat simulation tool CASiMiR. In the first part of the article, the accuracy of the hydraulic model is evaluated by comparing the model results with laboratory (model of a laboratory channel with erodible bed) and field measurements (Valsura River, Bolzano, Italy). In the second part, the habitat suitability for the Valsura River case study (affected by hydropeaking), is analyzed comparing different approaches for the reconstruction of the velocity field (depth-averaged velocities from 2D modelling, bottom velocity field reconstruction with log-law approach from 2D modelling and bottom velocity field from 3D modelling). The results show that the habitat suitability index (HSI) using 2D or 3D hydrodynamic models can be significantly different. These differences can be ascribed to a higher capability to depict the features of the flow field with highly variable and heterogeneous boundary conditions and to the possibility to simulate the near bed hydrodynamic parameters, which are relevant for certain target species. In particular, the HSI-values using 3D hydraulics lead to larger areas of highly suitable habitats compared to 2D simulations. Moreover, considering the entire flow range of hydropeaking events, the habitat simulations with bottom flow velocities from 3D modelling provide suitable habitats over the entire flow range representing the availability of stable suitable habitats, while the habitat availability of 2D modelled flow velocity is continuously decreasing with increasing flow rates.

  10. Radiation Hydrodynamics

    SciTech Connect

    Castor, J I

    2003-10-16

    The discipline of radiation hydrodynamics is the branch of hydrodynamics in which the moving fluid absorbs and emits electromagnetic radiation, and in so doing modifies its dynamical behavior. That is, the net gain or loss of energy by parcels of the fluid material through absorption or emission of radiation are sufficient to change the pressure of the material, and therefore change its motion; alternatively, the net momentum exchange between radiation and matter may alter the motion of the matter directly. Ignoring the radiation contributions to energy and momentum will give a wrong prediction of the hydrodynamic motion when the correct description is radiation hydrodynamics. Of course, there are circumstances when a large quantity of radiation is present, yet can be ignored without causing the model to be in error. This happens when radiation from an exterior source streams through the problem, but the latter is so transparent that the energy and momentum coupling is negligible. Everything we say about radiation hydrodynamics applies equally well to neutrinos and photons (apart from the Einstein relations, specific to bosons), but in almost every area of astrophysics neutrino hydrodynamics is ignored, simply because the systems are exceedingly transparent to neutrinos, even though the energy flux in neutrinos may be substantial. Another place where we can do ''radiation hydrodynamics'' without using any sophisticated theory is deep within stars or other bodies, where the material is so opaque to the radiation that the mean free path of photons is entirely negligible compared with the size of the system, the distance over which any fluid quantity varies, and so on. In this case we can suppose that the radiation is in equilibrium with the matter locally, and its energy, pressure and momentum can be lumped in with those of the rest of the fluid. That is, it is no more necessary to distinguish photons from atoms, nuclei and electrons, than it is to distinguish

  11. Hydrodynamic Coupling in Microbially Mediated Fracture Mineralization: Formation of Self-Organized Groundwater Flow Channels

    NASA Astrophysics Data System (ADS)

    Lunn, R. J.; El Mountassir, G.; MacLachlan, E.; Moir, H.

    2013-12-01

    Evidence of fossilized microorganisms embedded within mineral veins and mineral-filled fractures has been observed in a wide range of geological environments. Microorganisms can act as sites for mineral nucleation and also contribute to mineral precipitation by inducing local geochemical changes. In this study, we explore fundamental controls on microbially induced mineralization in rock fractures. Specifically, we systematically investigate the influence of hydrodynamics (velocity, flow rate, aperture) on microbially mediated calcite precipitation. We use a case study of microbially induced calcite precipitation as a model biomineralization system to investigate potential feedback mechanisms between the temporally varying patterns of mineral precipitation within a fracture and the resulting variations in the local velocity field. Fractures are represented as a series of precision-etched parallel channels between a pair of sealed Perspex plates. Multiple channels are designed to maintain a constant flow rate, whilst independently adjusting channel aperture and width to explore the effects of aperture and fluid velocity on biomineral precipitation. Our experimental results demonstrate that a feedback mechanism exists between the gradual reduction in fracture aperture due to precipitation, and its effect on the local fluid velocity. This feedback results in mineral fill distributions that focus flow into a small number of self-organizing channels that remain open, ultimately controlling the final aperture profile that governs flow within the fracture. This feedback mechanism exists because precipitation on the fracture walls (as opposed to in solution) requires the bacteria to be transported to the fracture surface. Bacteria settle out of a quiescent solution at a velocity that is dependent on individual floc size and density. This settling velocity competes with the bed shear velocity, inhibiting deposition via entrainment. As precipitation progresses, the flow

  12. Effect of roughness formulation on the performance of a coupled wave, hydrodynamic, and sediment transport model

    USGS Publications Warehouse

    Ganju, Neil K.; Sherwood, Christopher R.

    2010-01-01

    A variety of algorithms are available for parameterizing the hydrodynamic bottom roughness associated with grain size, saltation, bedforms, and wave–current interaction in coastal ocean models. These parameterizations give rise to spatially and temporally variable bottom-drag coefficients that ostensibly provide better representations of physical processes than uniform and constant coefficients. However, few studies have been performed to determine whether improved representation of these variable bottom roughness components translates into measurable improvements in model skill. We test the hypothesis that improved representation of variable bottom roughness improves performance with respect to near-bed circulation, bottom stresses, or turbulence dissipation. The inner shelf south of Martha’s Vineyard, Massachusetts, is the site of sorted grain-size features which exhibit sharp alongshore variations in grain size and ripple geometry over gentle bathymetric relief; this area provides a suitable testing ground for roughness parameterizations. We first establish the skill of a nested regional model for currents, waves, stresses, and turbulent quantities using a uniform and constant roughness; we then gauge model skill with various parameterization of roughness, which account for the influence of the wave-boundary layer, grain size, saltation, and rippled bedforms. We find that commonly used representations of ripple-induced roughness, when combined with a wave–current interaction routine, do not significantly improve skill for circulation, and significantly decrease skill with respect to stresses and turbulence dissipation. Ripple orientation with respect to dominant currents and ripple shape may be responsible for complicating a straightforward estimate of the roughness contribution from ripples. In addition, sediment-induced stratification may be responsible for lower stresses than predicted by the wave–current interaction model.

  13. True 3d Images and Their Applications

    NASA Astrophysics Data System (ADS)

    Wang, Z.; wang@hzgeospace., zheng.

    2012-07-01

    A true 3D image is a geo-referenced image. Besides having its radiometric information, it also has true 3Dground coordinates XYZ for every pixels of it. For a true 3D image, especially a true 3D oblique image, it has true 3D coordinates not only for building roofs and/or open grounds, but also for all other visible objects on the ground, such as visible building walls/windows and even trees. The true 3D image breaks the 2D barrier of the traditional orthophotos by introducing the third dimension (elevation) into the image. From a true 3D image, for example, people will not only be able to read a building's location (XY), but also its height (Z). true 3D images will fundamentally change, if not revolutionize, the way people display, look, extract, use, and represent the geospatial information from imagery. In many areas, true 3D images can make profound impacts on the ways of how geospatial information is represented, how true 3D ground modeling is performed, and how the real world scenes are presented. This paper first gives a definition and description of a true 3D image and followed by a brief review of what key advancements of geospatial technologies have made the creation of true 3D images possible. Next, the paper introduces what a true 3D image is made of. Then, the paper discusses some possible contributions and impacts the true 3D images can make to geospatial information fields. At the end, the paper presents a list of the benefits of having and using true 3D images and the applications of true 3D images in a couple of 3D city modeling projects.

  14. Negative-Mass Hydrodynamics in a Spin-Orbit-coupled Bose-Einstein Condensate

    NASA Astrophysics Data System (ADS)

    Khamehchi, M. A.; Hossain, Khalid; Mossman, M. E.; Zhang, Yongping; Busch, Th.; Forbes, Michael McNeil; Engels, P.

    2017-04-01

    A negative effective mass can be realized in quantum systems by engineering the dispersion relation. A powerful method is provided by spin-orbit coupling, which is currently at the center of intense research efforts. Here we measure an expanding spin-orbit coupled Bose-Einstein condensate whose dispersion features a region of negative effective mass. We observe a range of dynamical phenomena, including the breaking of parity and of Galilean covariance, dynamical instabilities, and self-trapping. The experimental findings are reproduced by a single-band Gross-Pitaevskii simulation, demonstrating that the emerging features—shock waves, soliton trains, self-trapping, etc.—originate from a modified dispersion. Our work also sheds new light on related phenomena in optical lattices, where the underlying periodic structure often complicates their interpretation.

  15. 3D Plasmon Ruler

    SciTech Connect

    2011-01-01

    In this animation of a 3D plasmon ruler, the plasmonic assembly acts as a transducer to deliver optical information about the structural dynamics of an attached protein. (courtesy of Paul Alivisatos group)

  16. Prominent Rocks - 3-D

    NASA Image and Video Library

    1997-07-13

    Many prominent rocks near the Sagan Memorial Station are featured in this image from NASA Mars Pathfinder. Shark, Half-Dome, and Pumpkin are at center 3D glasses are necessary to identify surface detail.

  17. 3D Laser System

    NASA Image and Video Library

    2015-09-16

    NASA Glenn's Icing Research Tunnel 3D Laser System used for digitizing ice shapes created in the wind tunnel. The ice shapes are later utilized for characterization, analysis, and software development.

  18. Development of a coupled hydrological - hydrodynamic model for probabilistic catchment flood inundation modelling

    NASA Astrophysics Data System (ADS)

    Quinn, Niall; Freer, Jim; Coxon, Gemma; Dunne, Toby; Neal, Jeff; Bates, Paul; Sampson, Chris; Smith, Andy; Parkin, Geoff

    2017-04-01

    Computationally efficient flood inundation modelling systems capable of representing important hydrological and hydrodynamic flood generating processes over relatively large regions are vital for those interested in flood preparation, response, and real time forecasting. However, such systems are currently not readily available. This can be particularly important where flood predictions from intense rainfall are considered as the processes leading to flooding often involve localised, non-linear spatially connected hillslope-catchment responses. Therefore, this research introduces a novel hydrological-hydraulic modelling framework for the provision of probabilistic flood inundation predictions across catchment to regional scales that explicitly account for spatial variability in rainfall-runoff and routing processes. Approaches have been developed to automate the provision of required input datasets and estimate essential catchment characteristics from freely available, national datasets. This is an essential component of the framework as when making predictions over multiple catchments or at relatively large scales, and where data is often scarce, obtaining local information and manually incorporating it into the model quickly becomes infeasible. An extreme flooding event in the town of Morpeth, NE England, in 2008 was used as a first case study evaluation of the modelling framework introduced. The results demonstrated a high degree of prediction accuracy when comparing modelled and reconstructed event characteristics for the event, while the efficiency of the modelling approach used enabled the generation of relatively large ensembles of realisations from which uncertainty within the prediction may be represented. This research supports previous literature highlighting the importance of probabilistic forecasting, particularly during extreme events, which can be often be poorly characterised or even missed by deterministic predictions due to the inherent

  19. Independent components analysis coupled with 3D-front-face fluorescence spectroscopy to study the interaction between plastic food packaging and olive oil.

    PubMed

    Kassouf, Amine; El Rakwe, Maria; Chebib, Hanna; Ducruet, Violette; Rutledge, Douglas N; Maalouly, Jacqueline

    2014-08-11

    Olive oil is one of the most valued sources of fats in the Mediterranean diet. Its storage was generally done using glass or metallic packaging materials. Nowadays, plastic packaging has gained worldwide spread for the storage of olive oil. However, plastics are not inert and interaction phenomena may occur between packaging materials and olive oil. In this study, extra virgin olive oil samples were submitted to accelerated interaction conditions, in contact with polypropylene (PP) and polylactide (PLA) plastic packaging materials. 3D-front-face fluorescence spectroscopy, being a simple, fast and non destructive analytical technique, was used to study this interaction. Independent components analysis (ICA) was used to analyze raw 3D-front-face fluorescence spectra of olive oil. ICA was able to highlight a probable effect of a migration of substances with antioxidant activity. The signals extracted by ICA corresponded to natural olive oil fluorophores (tocopherols and polyphenols) as well as newly formed ones which were tentatively identified as fluorescent oxidation products. Based on the extracted fluorescent signals, olive oil in contact with plastics had slower aging rates in comparison with reference oils. Peroxide and free acidity values validated the results obtained by ICA, related to olive oil oxidation rates. Sorbed olive oil in plastic was also quantified given that this sorption could induce a swelling of the polymer thus promoting migration.

  20. Delft3D turbine turbulence module

    SciTech Connect

    Chartrand, Chris; Jagers, Bert

    2016-04-18

    The DOE has funded Sandia National Labs (SNL) to develop an open-source modeling tool to guide the design and layout of marine hydrokinetic (MHK) arrays to maximize power production while minimizing environmental effects. This modeling framework simulates flows through and around a MHK arrays while quantifying environmental responses. As an augmented version of the Dutch company, Deltares’s, environmental hydrodynamics code, Delft3D, SNL-Delft3D includes a new module that simulates energy conversion (momentum withdrawal) by MHK devices with commensurate changes in the turbulent kinetic energy and its dissipation rate.

  1. Animal study assessing safety of an acoustic coupling fluid that holds the potential to avoid surgically induced artifacts in 3D ultrasound guided operations.

    PubMed

    Jakola, Asgeir S; Jørgensen, Arve; Selbekk, Tormod; Michler, Ralf-Peter; Solheim, Ole; Torp, Sverre H; Sagberg, Lisa M; Aadahl, Petter; Unsgård, Geirmund

    2014-03-25

    Use of ultrasound in brain tumor surgery is common. The difference in attenuation between brain and isotonic saline may cause artifacts that degrade the ultrasound images, potentially affecting resection grades and safety. Our research group has developed an acoustic coupling fluid that attenuates ultrasound energy like the normal brain. We aimed to test in animals if the newly developed acoustic coupling fluid may have harmful effects. Eight rats were included for intraparenchymal injection into the brain, and if no adverse reactions were detected, 6 pigs were to be included with injection of the coupling fluid into the subarachnoid space. Animal behavior, EEG registrations, histopathology and immunohistochemistry were used in assessment. In total, 14 animals were included, 8 rats and 6 pigs. We did not detect any clinical adverse effects, seizure activity on EEG or histopathological signs of tissue damage. The novel acoustic coupling fluid intended for brain tumor surgery appears safe in rats and pigs under the tested circumstances.

  2. Evaluation of Hydrodynamic Chromatography Coupled with UV-Visible, Fluorescence and Inductively Coupled Plasma Mass Spectrometry Detectors for Sizing and Quantifying Colloids in Environmental Media

    PubMed Central

    Philippe, Allan; Schaumann, Gabriele E.

    2014-01-01

    In this study, we evaluated hydrodynamic chromatography (HDC) coupled with inductively coupled plasma mass spectrometry (ICP-MS) for the analysis of nanoparticles in environmental samples. Using two commercially available columns (Polymer Labs-PDSA type 1 and 2), a set of well characterised calibrants and a new external time marking method, we showed that flow rate and eluent composition have few influence on the size resolution and, therefore, can be adapted to the sample particularity. Monitoring the agglomeration of polystyrene nanoparticles over time succeeded without observable disagglomeration suggesting that even weak agglomerates can be measured using HDC. Simultaneous determination of gold colloid concentration and size using ICP-MS detection was validated for elemental concentrations in the ppb range. HDC-ICP-MS was successfully applied to samples containing a high organic and ionic background. Indeed, online combination of UV-visible, fluorescence and ICP-MS detectors allowed distinguishing between organic molecules and inorganic colloids during the analysis of Ag nanoparticles in synthetic surface waters and TiO2 and ZnO nanoparticles in commercial sunscreens. Taken together, our results demonstrate that HDC-ICP-MS is a flexible, sensitive and reliable method to measure the size and the concentration of inorganic colloids in complex media and suggest that there may be a promising future for the application of HDC in environmental science. Nonetheless the rigorous measurements of agglomerates and of matrices containing natural colloids still need to be studied in detail. PMID:24587393

  3. Evaluation of hydrodynamic chromatography coupled with UV-visible, fluorescence and inductively coupled plasma mass spectrometry detectors for sizing and quantifying colloids in environmental media.

    PubMed

    Philippe, Allan; Schaumann, Gabriele E

    2014-01-01

    In this study, we evaluated hydrodynamic chromatography (HDC) coupled with inductively coupled plasma mass spectrometry (ICP-MS) for the analysis of nanoparticles in environmental samples. Using two commercially available columns (Polymer Labs-PDSA type 1 and 2), a set of well characterised calibrants and a new external time marking method, we showed that flow rate and eluent composition have few influence on the size resolution and, therefore, can be adapted to the sample particularity. Monitoring the agglomeration of polystyrene nanoparticles over time succeeded without observable disagglomeration suggesting that even weak agglomerates can be measured using HDC. Simultaneous determination of gold colloid concentration and size using ICP-MS detection was validated for elemental concentrations in the ppb range. HDC-ICP-MS was successfully applied to samples containing a high organic and ionic background. Indeed, online combination of UV-visible, fluorescence and ICP-MS detectors allowed distinguishing between organic molecules and inorganic colloids during the analysis of Ag nanoparticles in synthetic surface waters and TiO₂ and ZnO nanoparticles in commercial sunscreens. Taken together, our results demonstrate that HDC-ICP-MS is a flexible, sensitive and reliable method to measure the size and the concentration of inorganic colloids in complex media and suggest that there may be a promising future for the application of HDC in environmental science. Nonetheless the rigorous measurements of agglomerates and of matrices containing natural colloids still need to be studied in detail.

  4. Sustaining Moore's law with 3D chips

    DOE PAGES

    DeBenedictis, Erik P.; Badaroglu, Mustafa; Chen, An; ...

    2017-08-01

    Here, rather than continue the expensive and time-consuming quest for transistor replacement, the authors argue that 3D chips coupled with new computer architectures can keep Moore's law on its traditional scaling path.

  5. Fluid Transport in Porous Rocks. II. Hydrodynamic Model of Flow and Intervoxel Coupling

    NASA Astrophysics Data System (ADS)

    Mansfield, P.; Issa, B.

    In a preceding paper [P. Mansfield and B. Issa, J. Magn. Reson. A122, 137-148 (1996)], a stochastic model of fluid flow in porous rocks based upon the experimental observation of water flow through a Bentheimer sandstone core was proposed. The flow maps were measured by NMR-imaging techniques. The stochastic theory led to a Gaussian velocity distribution with a mean value in accord with Darcy's law. Also predicted was a linear relationship between flow variance and mean fluid flow through rock, the Mansfield-Issa equation, originally proposed as an empirical relationship. In the present work a flow coupling mechanism between voxels is proposed. Examination of the flow coupling between isolated voxel pairs leads to a complementary explanation of the Gaussian velocity distribution, and also gives further details of the Mansfield-Issa equation. These details lead to a new expression for the connectivity, < C>, between voxels with an experimental value of < C> = 5.64 × 10 -9for Bentheimer sandstone.

  6. Coupled 3D time-dependent quantum wave-packet study of the O + OH reaction in hyperspherical coordinates on the CHIPR potential energy surface

    NASA Astrophysics Data System (ADS)

    Ghosh, Sandip; Sharma, Rahul; Adhikari, Satrajit; Varandas, António J. C.

    2017-05-01

    We report quantum dynamics calculations of the O + OH → H + O2 reaction on the CHIPR (Varandas, 2013) and DMBE IV (Pastrana et al., 1990) potential energy surfaces (PESs) for ground-state HO2 using the 3D time-dependent wavepacket formalism based on hyperspherical coordinates. Reaction probabilities for J = 0 are calculated for several initial rovibrational states of the OH radical (v = 0; j = 0-5). The J-shifting approximation is used to obtain initial state selected rate-coefficients in the range 0-400 K. Total and state-to-state rate-coefficients are predicted in good agreement with recent experimental studies and theoretical calculations.

  7. Modification of magnetic anisotropy through 3d-4f coupling in La0.75Pr0.25Co2P2

    NASA Astrophysics Data System (ADS)

    Kovnir, Kirill; Thompson, Corey M.; Garlea, V. Ovidiu; Haskel, Daniel; Polyanskii, Anatolii A.; Zhou, Haidong; Shatruk, Michael

    2013-09-01

    Magnetic behavior of La0.75Pr0.25Co2P2 was investigated by a combination of magnetic measurements, magneto-optical imaging, neutron diffraction, and x-ray absorption spectroscopy, including x-ray magnetic circular dichroism. The material crystallizes in the ThCr2Si2 structure type and exhibits three consecutive magnetic phase transitions. At 167 K, the Co magnetic moments order ferromagnetically in the ab plane of the tetragonal crystal structure. At 66 K, a ferromagnetic ordering of Pr(4f) moments parallel to the c axis causes a rotation of the Co(3d) moments towards the c axis in the direction opposite to the Pr moments, thus forming a noncollinear ferrimagnetically ordered structure and switching the direction of the total magnetization from the ab plane to the c axis. The third magnetic transition observed at 35 K is likely associated with the establishment of the collinear ferrimagnetic order along the c axis.

  8. Virus-bacterium coupling driven by both turbidity and hydrodynamics in an Amazonian floodplain lake.

    PubMed

    Barros, Nathan; Farjalla, Vinicius F; Soares, Maria C; Melo, Rossana C N; Roland, Fábio

    2010-11-01

    The importance of viruses in aquatic ecosystem functioning has been widely described. However, few studies have examined tropical aquatic ecosystems. Here, we evaluated for the first time viruses and their relationship with other planktonic communities in an Amazonian freshwater ecosystem. Coupling between viruses and bacteria was studied, focusing both on hydrologic dynamics and anthropogenic forced turbidity in the system (Lake Batata). Samples were taken during four hydrologic seasons at both natural and impacted sites to count virus-like particles (VLP) and bacteria. In parallel, virus-infected bacteria were identified and quantified by transmission electron microscopy (TEM). Viral abundance ranged from 0.5 × 10⁷ ± 0.2 × 10⁷ VLP ml⁻¹ (high-water season, impacted site) to 1.7 × 10⁷ ± 0.4 × 10⁷ VLP ml⁻¹ (low-water season, natural site). These data were strongly correlated with the bacterial abundance (r² = 0.84; P < 0.05), which ranged from 1.0 × 10⁶ ± 0.5 × 10⁶ cells ml⁻¹ (high water, impacted site) to 3.4 × 10⁶ ± 0.7 × 10⁶ cells ml⁻¹ (low water, natural site). Moreover, the viral abundance was weakly correlated with chlorophyll a, suggesting that most viruses were bacteriophages. TEM quantitative analyses revealed that the frequency of visibly infected cells was 20%, with 10 ± 3 phages per cell section. In general, we found a low virus-bacterium ratio (<7). Both the close coupling between the viral and bacterial abundances and the low virus-bacterium ratio suggest that viral abundance tends to be driven by the reduction of hosts for viral infection. Our results demonstrate that viruses are controlled by biological substrates, whereas in addition to grazing, bacteria are regulated by physical processes caused by turbidity, which affect underwater light distribution and dissolved organic carbon availability.

  9. Computational study of 3-D hot-spot initiation in shocked insensitive high-explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.; Manaa, M. R.; Nichols, A., III; Levesque, G.

    2012-03-01

    High-explosive (HE) material consists of large-sized grains with micron-sized embedded impurities and pores. Under various mechanical/thermal insults, these pores collapse generating hightemperature regions leading to ignition. A hydrodynamic study has been performed to investigate the mechanisms of pore collapse and hot spot initiation in TATB crystals, employing a multiphysics code, ALE3D, coupled to the chemistry module, Cheetah. This computational study includes reactive dynamics. Two-dimensional high-resolution large-scale meso-scale simulations have been performed. The parameter space is systematically studied by considering various shock strengths, pore diameters and multiple pore configurations. Preliminary 3-D simulations are undertaken to quantify the 3-D dynamics.

  10. Evaluation of 3D radio-frequency electromagnetic fields for any matching and coupling conditions by the use of basis functions.

    PubMed

    Tiberi, Gianluigi; Fontana, Nunzia; Monorchio, Agostino; Stara, Riccardo; Retico, Alessandra; Tosetti, Michela

    2015-12-01

    A procedure for evaluating radio-frequency electromagnetic fields in anatomical human models for any matching and coupling conditions is introduced. The procedure resorts to the extraction of basis functions: such basis functions, which represent the fields produced by each individual port without any residual coupling, are derived through an algebraic procedure which uses the S parameter matrix and the fields calculated in one (only) full-wave simulation. The basis functions are then used as building-blocks for calculating the fields for any other S parameter matrix. The proposed approach can be used both for volume coil driven in quadrature and for parallel transmission configuration.

  11. Evaluation of 3D radio-frequency electromagnetic fields for any matching and coupling conditions by the use of basis functions

    NASA Astrophysics Data System (ADS)

    Tiberi, Gianluigi; Fontana, Nunzia; Monorchio, Agostino; Stara, Riccardo; Retico, Alessandra; Tosetti, Michela

    2015-12-01

    A procedure for evaluating radio-frequency electromagnetic fields in anatomical human models for any matching and coupling conditions is introduced. The procedure resorts to the extraction of basis functions: such basis functions, which represent the fields produced by each individual port without any residual coupling, are derived through an algebraic procedure which uses the S parameter matrix and the fields calculated in one (only) full-wave simulation. The basis functions are then used as building-blocks for calculating the fields for any other S parameter matrix. The proposed approach can be used both for volume coil driven in quadrature and for parallel transmission configuration.

  12. Radiochromic 3D Detectors

    NASA Astrophysics Data System (ADS)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  13. 3-D Seismic Interpretation

    NASA Astrophysics Data System (ADS)

    Moore, Gregory F.

    2009-05-01

    This volume is a brief introduction aimed at those who wish to gain a basic and relatively quick understanding of the interpretation of three-dimensional (3-D) seismic reflection data. The book is well written, clearly illustrated, and easy to follow. Enough elementary mathematics are presented for a basic understanding of seismic methods, but more complex mathematical derivations are avoided. References are listed for readers interested in more advanced explanations. After a brief introduction, the book logically begins with a succinct chapter on modern 3-D seismic data acquisition and processing. Standard 3-D acquisition methods are presented, and an appendix expands on more recent acquisition techniques, such as multiple-azimuth and wide-azimuth acquisition. Although this chapter covers the basics of standard time processing quite well, there is only a single sentence about prestack depth imaging, and anisotropic processing is not mentioned at all, even though both techniques are now becoming standard.

  14. Coupled Effects of Vadose Zone Hydrodynamics and Anionic Surfactant Aerosol-22 on the Transport of Cryptosporidium parvum in Soil

    NASA Astrophysics Data System (ADS)

    Darnault, C. J.; Jacobson, A. R.; Powelson, D.; Baveye, P.; Peng, Z.; Yu, C.

    2013-12-01

    Cryptosporidium parvum is a microbial pathogen that may be found in soil, surface and groundwater resources. We studied their transport behavior under conditions where both C. parvum oocysts and chemicals that may affect their mobility are present in soils. Surfactants occur widely in soils due to agricultural practices such as wastewater irrigation and application of agrichemicals. Surfactants decrease the surface tension of the soil solution, which may reduce the ability of C. parvum oocysts to be retained at gas-water interfaces. Understanding the fate and transport of C. parvum oocysts following land application of manure and use of surfactants in rural and agricultural watersheds is critical to assess the threat to water resources. We investigated the coupled effects of vadose zone hydrodynamics and an anionic surfactant Aerosol-22 on the transport of C. parvum oocysts in natural structured and non-structured agricultural or range soils from Illinois and Utah. Column transport experiments consisted of unsaturated flow subject to macropore and fingered flows resulting from simulated rainfall with and without surfactant. To assess the behavior of C. parvum oocysts in soils, the breakthrough and distribution of C. parvum oocysts in soil profiles were obtained using qPCR. We observed that surfactant enhanced the transport of C. parvum oocysts when preferential flow paths are present. However, when the interconnection between macropores is not established in the soils, surfactant limited the transport of C. parvum oocysts through the soil matrix by forming oocyst-surfactant-Ca flocs.

  15. Quantifying Lake Water Quality Evolution: Coupled Geochemistry, Hydrodynamics, and Aquatic Ecology in an Acidic Pit Lake.

    PubMed

    Salmon, S Ursula; Hipsey, Matthew R; Wake, Geoffrey W; Ivey, Gregory N; Oldham, Carolyn E

    2017-09-05

    Assessment of water quality evolution in the thousands of existing and future mine pit lakes worldwide requires new numerical tools that integrate geochemical, hydrological, and biological processes. A coupled model was used to test alternative hypothesized controls on water quality in a pit lake over ∼8 years. The evolution of pH, Al, and Fe were closely linked; field observations were reproduced with generic solubility equilibrium controls on Fe(III) and Al and a commonly reported acceleration of the abiotic Fe(II) oxidation rate by 2-3 orders of magnitude. Simulations indicated an ongoing acidity loading at the site, and the depletion of Al mineral buffering capacity after ∼5 years. Simulations also supported the existence of pH limitation on nitrification, and a limitation on phytoplankton growth other than the commonly postulated P and DIC limitations. Furthermore, the model reproduced the general patterns of salinity, pH, Al, and Fe during an uncontrolled river breach in 2011, however, incorporating sediment biogeochemical feedbacks is required to reproduce the observed postbreach internal alkalinity generation in the lake. The modeling approach is applicable to the study of hydrological, geochemical, and biological interactions for a range of lake and reservoir management challenges.

  16. Bootstrapping 3D fermions

    DOE PAGES

    Iliesiu, Luca; Kos, Filip; Poland, David; ...

    2016-03-17

    We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge CT. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  17. Bootstrapping 3D fermions

    SciTech Connect

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-17

    We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge CT. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  18. Medical 3-D Printing.

    PubMed

    Furlow, Bryant

    2017-05-01

    Three-dimensional printing is used in the manufacturing industry, medical and pharmaceutical research, drug production, clinical medicine, and dentistry, with implications for precision and personalized medicine. This technology is advancing the development of patient-specific prosthetics, stents, splints, and fixation devices and is changing medical education, treatment decision making, and surgical planning. Diagnostic imaging modalities play a fundamental role in the creation of 3-D printed models. Although most 3-D printed objects are rigid, flexible soft-tissue-like prosthetics also can be produced. ©2017 American Society of Radiologic Technologists.

  19. Animal study assessing safety of an acoustic coupling fluid that holds the potential to avoid surgically induced artifacts in 3D ultrasound guided operations

    PubMed Central

    2014-01-01

    Background Use of ultrasound in brain tumor surgery is common. The difference in attenuation between brain and isotonic saline may cause artifacts that degrade the ultrasound images, potentially affecting resection grades and safety. Our research group has developed an acoustic coupling fluid that attenuates ultrasound energy like the normal brain. We aimed to test in animals if the newly developed acoustic coupling fluid may have harmful effects. Methods Eight rats were included for intraparenchymal injection into the brain, and if no adverse reactions were detected, 6 pigs were to be included with injection of the coupling fluid into the subarachnoid space. Animal behavior, EEG registrations, histopathology and immunohistochemistry were used in assessment. Results In total, 14 animals were included, 8 rats and 6 pigs. We did not detect any clinical adverse effects, seizure activity on EEG or histopathological signs of tissue damage. Conclusion The novel acoustic coupling fluid intended for brain tumor surgery appears safe in rats and pigs under the tested circumstances. PMID:24666721

  20. Simulation of Wave-Current Interaction Using a Three-Dimensional Hydrodynamic Model Coupled With a Phase Averaged Wave Model

    NASA Astrophysics Data System (ADS)

    Marsooli, R.; Orton, P. M.; Georgas, N.; Blumberg, A. F.

    2016-02-01

    The Stevens Institute of Technology Estuarine and Coastal Ocean Model (sECOM) has been coupled with a more advanced surface wave model to simulate wave‒current interaction, and results have been validated in estuarine and nearshore waters. sECOM is a three‒dimensional, hydrostatic, free surface, primitive equation model. It solves the Navier‒Stokes equations and the conservation equations for temperature and salinity using a finite‒difference method on an Arakawa C‒grid with a terrain‒following (sigma) vertical coordinate and orthogonal curvilinear horizontal coordinate system. The model is coupled with the surface wave model developed by Mellor et al. (2008), which solves the spectral equation and takes into account depth and current refraction, and deep and shallow water. The wave model parameterizes the energy distribution in frequency space and the wave‒wave interaction process by using a specified spectrum shape. The coupled wave‒hydrodynamic model considers the wave‒current interaction through wave‒induced bottom stress, depth‒dependent radiation stress, and wave effects on wind‒induced surface stress. The model is validated using the data collected at a natural sandy beach at Duck, North Carolina, during the DUCK94 experiment. This test case reveals the capability of the model to simulate the wave‒current interaction in nearshore coastal systems. The model is further validated using the data collected in Jamaica Bay, a semi‒enclosed body of water located in New York City region. This test reveals the applicability of the model to estuarine systems. These validations of the model and comparisons to its prior wave model, the Great Lakes Environmental Research Laboratory (GLERL) wave model (Donelan 1977), are presented and discussed. ReferencesG.L. Mellor, M.A. Donelan, and L‒Y. Oey, 2008, A Surface Wave Model for Coupling with Numerical Ocean Circulation Models. J. Atmos. Oceanic Technol., 25, 1785‒1807.Donelan, M. A 1977. A