Science.gov

Sample records for 3d fast reconnection

  1. Dissipation mechanism in 3D magnetic reconnection

    SciTech Connect

    Fujimoto, Keizo

    2011-11-15

    Dissipation processes responsible for fast magnetic reconnection in collisionless plasmas are investigated using 3D electromagnetic particle-in-cell simulations. The present study revisits the two simulation runs performed in the previous study (Fujimoto, Phys. Plasmas 16, 042103 (2009)); one with small system size in the current density direction, and the other with larger system size. In the case with small system size, the reconnection processes are almost the same as those in 2D reconnection, while in the other case a kink mode evolves along the current density and deforms the current sheet structure drastically. Although fast reconnection is achieved in both the cases, the dissipation mechanism is very different between them. In the case without kink mode, the electrons transit the electron diffusion region without thermalization, so that the magnetic dissipation is supported by the inertia resistivity alone. On the other hand, in the kinked current sheet, the electrons are not only accelerated in bulk, but they are also partly scattered and thermalized by the kink mode, which results in the anomalous resistivity in addition to the inertia resistivity. It is demonstrated that in 3D reconnection the thickness of the electron current sheet becomes larger than the local electron inertia length, consistent with the theoretical prediction in Fujimoto and Sydora (Phys. Plasmas 16, 112309 (2009)).

  2. 3D Hall-mediated fast magnetic reconnection spontaneously initiated by a multi-scale instability cascade

    NASA Astrophysics Data System (ADS)

    Chai, Kil-Byoung; Zhai, Xiang; Bellan, Paul

    2015-11-01

    The Caltech astrophysical jet experiment provides a highly resolved demonstration of the interaction between single fluid and 2-fluid scales and possibly kinetic scales as well. The jet evolves through the following sequence: (i) a current-carrying MHD-driven plasma jet self-forms, (ii) the jet undergoes a kink instability, (iii) the kink provides the environment for a secondary, Rayleigh-Taylor (RT) instability, (iv) the RT instability erodes the current channel radius to a scale smaller than ion skin depth to cause fast magnetic reconnection, (v) the reconnection emits broadband obliquely-propagating, right-hand circularly polarized whistler waves, and (vi) the reconnection energizes electrons and ions. The observation of the whistler waves confirms that the reconnection is in the Hall MHD regime (i.e., 2-fluid). An energetic extreme ultraviolet burst is observed at the location of reconnection indicating strong, localized electron heating. Spectroscopic measurement shows simultaneous fast ion heating. The analysis shows that electrons are plausibly heated by Ohmic dissipation, and that ions are plausibly heated stochastically, i.e., the guiding center approximation fails, a kinetic effect.

  3. Local Diagnosis of Reconnection in 3D

    NASA Astrophysics Data System (ADS)

    Scudder, J. D.; Karimabadi, H.; Daughton, W. S.; Roytershteyn, V.

    2014-12-01

    We demonstrate (I,II) an approach to find reconnection sites in 3D where there is no flux function for guidance, and where local observational signatures for the ``violation of frozen flux'' are under developed, if not non-existent. We use 2D and 3D PIC simulations of asymmetric guide field reconnection to test our observational hierarchy of single spacecraft kinetic diagnostics - all possible with present state of the art instrumentation. The proliferation of turbulent, electron inertial scale layers in the realistic 3D case demonstrates that electron demagnetization, while necessary, is not sufficient to identify reconnection sites. An excellent local, observable, single spacecraft proxy is demonstrated for the size of the theoretical frozen flux violation. Since even frozen flux violations need not imply reconnection is at hand, a new calibrated dimensionless method is used to determine the importance of such violations. This measure is available in 2D and 3D to help differentiate reconnection layers from weaker frozen flux violating layers. We discuss the possibility that this technique can be implemented on MMS. A technique to highlight flow geometries conducive to reconnection in 3D simulations is also suggested, that may also be implementable with the MMS flotilla. We use local analysis with multiple necessary, but theoretically independent electron kinetic conditions to help reduce the probability of misidentification of any given layer as a reconnection site. Since these local conditions are all necessary for the site, but none is known to be sufficient, the multiple tests help to greatly reduce false positive identifications. The selectivity of the results of this approach using PIC simulations of 3D asymmetric guide field reconnection will be shown using varying numbers of simultaneous conditions. Scudder, J.D., H. Karimabadi, W. Daughton and V. Roytershteyn I, II, submitted Phys. Plasma., 2014

  4. Particle Acceleration in 3D Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Dahlin, J.; Drake, J. F.; Swisdak, M.

    2015-12-01

    Magnetic reconnection is an important driver of energetic particles in phenomena such as magnetospheric storms and solar flares. Using kinetic particle-in-cell (PIC) simulations, we show that the stochastic magnetic field structure which develops during 3D reconnection plays a vital role in particle acceleration and transport. In a 2D system, electrons are trapped in magnetic islands which limits their energy gain. In a 3D system, however, the stochastic magnetic field enables the energetic electrons to access volume-filling acceleration regions and therefore gain energy much more efficiently than in the 2D system. We also examine the relative roles of two important acceleration drivers: parallel electric fields and a Fermi mechanism associated with reflection of charged particles from contracting field lines. We find that parallel electric fields are most important for accelerating low energy particles, whereas Fermi reflection dominates energetic particle production. We also find that proton energization is reduced in the 3D system.

  5. Impulsive reconnection: 3D onset and stagnation in turbulent paradigms

    SciTech Connect

    Sears, Jason A; Intrator, Thomas P; Weber, Tom; Lapenta, Giovanni; Lazarian, Alexander

    2010-12-14

    Reconnection processes are ubiquitous in solar coronal loops, the earth's magnetotail, galactic jets, and laboratory configurations such as spheromaks and Z pinches. It is believed that reconnection dynamics are often closely linked to turbulence. In these phenomena, the bursty onset of reconnection is partly determined by a balance of macroscopic MHD forces. In a turbulent paradigm, it is reasonable to suppose that there exist many individual reconnection sites, each X-line being finite in axial extent and thus intrinsically three-dimensional (3D) in structure. The balance between MHD forces and flux pile-up continuously shifts as mutually tangled flux ropes merge or bounce. The spatial scale and thus the rate of reconnection are therefore intimately related to the turbulence statistics both in space and in time. We study intermittent 3D reconnection along spatially localized X-lines between two or more flux ropes. The threshold of MHD instability which in this case is the kink threshold is varied by modifying the line-tying boundary conditions. For fast inflow speed of approaching ropes, there is merging and magnetic reconnection which is a well known and expected consequence of the 2D coalescence instability. On the other hand, for slower inflow speed the flux ropes bounce. The threshold appears to be the Sweet Parker speed v{sub A}/S{sup 1/2}, where v{sub A} is the Alfven speed and S is the Lundquist number. Computations by collaborators at University of Wisconsin, Madison, Katholieke Universiteit Leuven, and LANL complement the experiment.

  6. Does fast magnetic reconnection exist?

    NASA Technical Reports Server (NTRS)

    Priest, E. R.; Forbes, T. G.

    1992-01-01

    The main features of the Priest-Forbes (1986) and Priest-Lee (1990) models of magnetic reconnection in astrophysical plasmas are discussed, and the Priest-Lee model is generalized to include inflow pressure gradients and thus different regimes of reconnection. It is shown that different scaling results can be obtained depending on the boundary conditions. These results are compared to the ones observed in the numerical experiments of Biskamp (1986) and Lee and Fu (1986). It is concluded that numerical experiments with suitably designed boundary conditions are likely to exhibit fast reconnection, and that such reconnection is a common process in astrophysical and space plasmas.

  7. Laboratory Study of Magnetic Reconnection in 3D Geometry Relevant to Magnetopause and Magnetotail

    NASA Astrophysics Data System (ADS)

    Ren, Y.; Lu, Q.; Ji, H.; Mao, A.; Wang, X.; E, P.; Wang, Z.; Xiao, Q.; Ding, W.; Zheng, J.

    2015-12-01

    Laboratory Study of Magnetic Reconnection in 3D Geometry Relevant to Magnetopause and Magnetotail Y. Ren1,2, Quaming Lu3, Hantao Ji1,2, Aohua Mao1, Xiaogang Wang1, Peng E1, Zhibin Wang1, Qingmei Xiao1, Weixing Ding4, Jinxing Zheng51 Harbin Institute of Technology, Harbin, China2 Princeton Plasma Physics Laboratory, Princeton University, Princeton, NJ 08543 3University of Science and Technology of China, Hefei, China 4University of California at Los Angeles, Los Angeles, CA, 90095 5ASIPP, Hefei, China A new magnetic reconnection experiment, Harbin reconnection eXperiment (HRX), is currently being designed as a key part of Space Plasma Environment Research Facility (SPERF) at Harbin Institute of Technology in Harbin, China. HRX aims to provide a unique experimental platform for studying reconnections in 3D geometry relevant to magnetopause and magnetotail to address: the role of electron and ion-scale dynamics in the current sheet; particle and energy transfer from magnetosheath to magnetosphere; particle energization/heating mechanisms during magnetic reconnection; 3D effects in fast reconnection, e.g. the role of 3D magnetic null point. HRX employs a unique set of coils to generate the required 3D magnetic geometry and provides a wide range of plasma parameters. Here, important motivating scientific problems are reviewed and the physics design of HRX is presented, including plasma parameters determined from Vlasov scaling law, reconnection scenarios explored using vacuum magnetic field calculations and numerical simulations of HRX using hybrid and MHD codes. Plasma diagnostics plan and engineering design of important coils will also be briefly presented.

  8. Mechanisms for fast flare reconnection

    NASA Technical Reports Server (NTRS)

    Vanhoven, G.; Deeds, D.; Tachi, T.

    1988-01-01

    Normal collisional-resistivity mechanisms of magnetic reconnection have the drawback that they are too slow to explain the fast rise of solar flares. Two methods are examined which are proposed for the speed-up of the magnetic tearing instability: the anomalous enhancement of resistivity by the injection of MHD turbulence and the increase of Coulomb resistivity by radiative cooling. The results are described for nonlinear numerical simulations of these processes which show that the first does not provide the claimed effects, while the second yields impressive rates of reconnection, but low saturated energy outputs.

  9. Wave modes facilitating fast magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Singh, N.

    2011-12-01

    Whistler and kinetic Alfven waves are often invoked to explain fast magnetic reconnection in collsionless plasmas. But how these wave modes facilitate the reconnection has remained unclear. An important unanswered question deals with the meaning of the wave frequency in the context of magnetic reconnection. New measurement on a fast explosive reconnection event in the Versatile Toroidal Facility (VTF) at MIT provides an interesting example of the meaning of the wave mode and the associated frequency directly related to the time scale of the impulsive reconnection. We examine the measurements in VTF in view of the whistler wave mode, showing that the explosive growth in the reconnection is related to the thinning of the current sheet to a few electron skin depths. We further demonstrate that the fastest measured time scale (~ 3 microseconds) and the largest normalized reconnection rate (~0.35) agree with those predicted from the whistler mode dispersion relation.

  10. 3D outflow jets originating from turbulence in the reconnection current layer

    NASA Astrophysics Data System (ADS)

    Fujimoto, Keizo

    2016-07-01

    Satellite observations in the Earth's magnetosphere and in solar flares have suggested that the reconnection outflow jets are fully three dimensional, consisting of a series of narrow channels. The jet structure is important in evaluating the energy and flux transport in the reconnection process. Previous theoretical models based on fluid simulations have relied on patchy reconnection where reconnection takes place predominantly in patchy portions of the current layer. The problem of the previous models is that the gross reconnection rate is much smaller than that in the 2D reconnection case. The present study shows a large-scale 3D PIC simulation revealing that the 3D outflow jets are generated through the 3D flux ropes formed in the turbulent electron current layer around the x-line. Reconnection proceeds almost uniformly along the x-line, so that the gross reconnection rate is comparable to that in the 2D reconnection case. The flux ropes and resultant outflow channels have a typical current-aligned scale provided by the wavelength of an electron shear mode that is much larger than the typical kinetic scales. It is found that the structure of the 3D outflow jets obtained in the simulation is consistent with the bursty bulk flow observed in the Earth's magnetotail.

  11. Fast Reconnection of Weak Magnetic Fields

    NASA Technical Reports Server (NTRS)

    Zweibel, Ellen G.

    1998-01-01

    Fast magnetic reconnection refers to annihilation or topological rearrangement of magnetic fields on a timescale that is independent (or nearly independent) of the plasma resistivity. The resistivity of astrophysical plasmas is so low that reconnection is of little practical interest unless it is fast. Yet, the theory of fast magnetic reconnection is on uncertain ground, as models must avoid the tendency of magnetic fields to pile up at the reconnection layer, slowing down the flow. In this paper it is shown that these problems can be avoided to some extent if the flow is three dimensional. On the other hand, it is shown that in the limited but important case of incompressible stagnation point flows, every flow will amplify most magnetic fields. Although examples of fast magnetic reconnection abound, a weak, disordered magnetic field embedded in stagnation point flow will in general be amplified, and should eventually modify the flow. These results support recent arguments against the operation of turbulent resistivity in highly conducting fluids.

  12. MHD study of three-dimensional spontaneous fast magnetic reconnection for cross-tail plasma inflows in magnetotail

    NASA Astrophysics Data System (ADS)

    Shimizu, Tohru; Torii, Hiroyuki; Kondoh, Koji

    2016-05-01

    The 3D instability of spontaneous fast magnetic reconnection process is studied with magnetohydrodynamic simulations, where 2D model of the spontaneous fast magnetic reconnection process is destabilized in three dimensions. In this 3D instability, the spontaneous fast magnetic reconnection process is intermittently and randomly caused in 3D. In this paper, as a typical event study, a single 3D fast magnetic reconnection process often observed in the 3D instability is studied in detail. As a remarkable feature, it is reported that, when the 3D fast magnetic reconnection process starts, plasma inflows along the magnetic neutral line are observed, which are driven by plasma static pressure gradient along the neutral line. The plasma inflow speed reaches about 15 in the upstream field region. The unmagnetized inflow tends to prevent the 3D reconnection process; nevertheless, the 3D reconnection process is intermittently maintained. Such high-speed plasma inflows along the neutral line may be observed as dawn-dusk flows in space satellite observations of magnetotail's bursty bulk flows.

  13. Fast magnetic reconnection with large guide fields

    SciTech Connect

    Stanier, A.; Simakov, Andrei N.; Chacón, L.; Daughton, W.

    2015-01-09

    Here, we demonstrate using two-fluid simulations that low-βmagnetic reconnection remains fast, regardless of the presence of fast dispersive waves, which have been previously suggested to play a critical role. In order to understand these results, a discrete model is constructed that offers scaling relationships for the reconnection rate and dissipation region (DR) thickness in terms of the upstream magnetic field and DR length. We verify these scalings numerically and show how the DR self-adjusts to process magnetic flux at the same rate that it is supplied to a larger region where two-fluid effects become important. Ultimately, the rate is independent of the DR physics and is in good agreement with kinetic results.

  14. Fast magnetic reconnection with large guide fields

    DOE PAGESBeta

    Stanier, A.; Simakov, Andrei N.; Chacón, L.; Daughton, W.

    2015-01-09

    Here, we demonstrate using two-fluid simulations that low-βmagnetic reconnection remains fast, regardless of the presence of fast dispersive waves, which have been previously suggested to play a critical role. In order to understand these results, a discrete model is constructed that offers scaling relationships for the reconnection rate and dissipation region (DR) thickness in terms of the upstream magnetic field and DR length. We verify these scalings numerically and show how the DR self-adjusts to process magnetic flux at the same rate that it is supplied to a larger region where two-fluid effects become important. Ultimately, the rate is independentmore » of the DR physics and is in good agreement with kinetic results.« less

  15. Multiscale Processes Energizing Plasmas during Reconnection: 3D Simulations in preparation for the MMS mission

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Goldman, Martin; Newman, David

    2015-11-01

    Magnetic reconnection is a mechanism to convert magnetic energy to particle energy in the form of heat and directed flows. We study here where reconnection and particle energization are found in full 3D models of a reconnecting plasma sheet. Three regions emerge as the primary loci of energy conversion: the separatrices, the dipolarization fronts and the electron diffusion region near x-points. We consider two scenarios: one where the exhaust from multiple x-lines forms a plasmoid (a flux rope in 3D) and one where the exhaust encounters pristine unreconnected plasma and forms a pile-up front. A key process intrinsically 3D, not present in 2D, is the development of an instability in the outflow leading to the formation of secondary reconnection sites that further enhance energy conversion. The MMS mission of NASA was launched on March 12 of this year with the stated goal of finding these regions. We will soon know if we are right in predicting these additional regions of dissipation in the reconnection outflow. Work supported by the NASA MMS Program and by the BOF funds of the KU Leuven. Simulations conducted on NASA Computing facilities, PRACE Tier-0 computing and at NERSC (DOE Office of Science User Contract No. DE-AC02-05CH11231).

  16. 3D instabilities connected with reconnection in full 3D PIC simulations

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni

    2013-10-01

    Kinetic reconnection is characterized by a distinct behavior of electrons and ions with regions of strong relative speeds between the species. Electrons can flow at great speed relative to ions and can be characterized by a strong non-gyrotropy and anisotropy. When studied in full three dilensions, these electron peculiar properties can drive numerous instabilities that have been investigated by the suggested speaker and his collaborators in a number of recent published papers. Two regions have received most attention: 1) the separatrices where instabilities are caused by the electron flow and the electron phase space features, 2) the downstream fronts where an interchange instability leads to strong energy exchanges and secondary reconnection. In both situations the ions are demagnitezed but the electrons are not and their behaviour is rich in full kinetic processes. At the separatrices, two types of instabilities have been observed. The electron phase space is characterized by multiple populations at relative drifts (electron beams) and the whole electron species is drifting with respect to the ions. This condition is subject to different streaming instabilities. Additionally, the separatrices are regions of intense density and flow shear, with free energy available to drive Kelvin-Helmholtz-type instabilities. In the downstream fronts of reconnection, a density gradient develops in conditions where the acceleration is directed unfavourably for stability, leading to ballooning and interchange-type instabilities. Both cases are of great importance for the upcoming Magnetospheric Multiscale Mission that is bent on finding and analyzing the regions where the electron scale physics is dominant. The processes discussed above can provide key information for the operation of the mission and the interpretation of its results. Collaboration between the University of Colorado NASA-MMSIDS team (M. Goldman, D. Newman, L. Anderson, S. Erikson) and the KULeuven Swiff team

  17. Experimental onset threshold and magnetic pressure pileup for 3D Sweet-Parker reconnection

    SciTech Connect

    Intrator, Thomas P; Sun, Xuan; Lapenta, Giovanni; Furno, Ivo

    2008-01-01

    In space, astrophysical and laboratory plasmas, magnetic reconnect ion converts magnetic into particle energy during unsteady, explosive events. The abrupt onset and cessation has been a long standing puzzle. We show the first three-dimensional (3D) laboratory example of onset and stagnation of Sweet-Parker type magnetic reconnection between magnetized and parallel current (flux) ropes driven by magnetohydrodynamic (MHD) attraction and 3D instability. Mutually attracting flux ropes advect and merge oppositely directed magnetic fields. Magnetic flux is annihilated, but reaches soon a threshold where magnetic flux and pressure pile up, and reconnection magnetic topology appears. This occurs when inflow speeds exceed the SweetParker speed v{sub SP} = v{sub A} / S{sup 1/2}, where v{sub A} is the Alfven speed and S is the Lundquist number for the reconnection layer, as magnetic flux arrives faster than flux annihilation can process it. Finally piled up fields generate MHD reaction forces that stall the inflow and the reconnection process.

  18. FastScript3D - A Companion to Java 3D

    NASA Technical Reports Server (NTRS)

    Koenig, Patti

    2005-01-01

    FastScript3D is a computer program, written in the Java 3D(TM) programming language, that establishes an alternative language that helps users who lack expertise in Java 3D to use Java 3D for constructing three-dimensional (3D)-appearing graphics. The FastScript3D language provides a set of simple, intuitive, one-line text-string commands for creating, controlling, and animating 3D models. The first word in a string is the name of a command; the rest of the string contains the data arguments for the command. The commands can also be used as an aid to learning Java 3D. Developers can extend the language by adding custom text-string commands. The commands can define new 3D objects or load representations of 3D objects from files in formats compatible with such other software systems as X3D. The text strings can be easily integrated into other languages. FastScript3D facilitates communication between scripting languages [which enable programming of hyper-text markup language (HTML) documents to interact with users] and Java 3D. The FastScript3D language can be extended and customized on both the scripting side and the Java 3D side.

  19. Magnetic reconnection in 3D magnetosphere models: magnetic separators and open flux production

    NASA Astrophysics Data System (ADS)

    Glocer, A.; Dorelli, J.; Toth, G.; Komar, C. M.; Cassak, P.

    2014-12-01

    There are multiple competing definitions of magnetic reconnection in 3D (e.g., Hesse and Schindler [1988], Lau and Finn [1990], and Boozer [2002]). In this work we focus on separator reconnection. A magnetic separator can be understood as the 3D analogue of a 2D x line with a guide field, and is defined by the line corresponding to the intersection of the separatrix surfaces associated with the magnetic nulls. A separator in the magnetosphere represents the intersection of four distinct magnetic topologies: solar wind, closed, open connected to the northern hemisphere, and open connected to the southern hemisphere. The integral of the parallel electric field along the separator defines the rate of open flux production, and is one measure of the reconnection rate. We present three methods for locating magnetic separators and apply them to 3D resistive MHD simulations of the Earth's magnetosphere using the BATS-R-US code. The techniques for finding separators and determining the reconnection rate are insensitive to IMF clock angle and can in principle be applied to any magnetospheric model. The present work examines cases of high and low resistivity, for two clock angles. We also examine the separator during Flux Transfer Events (FTEs) and Kelvin-Helmholtz instability.

  20. Secondary reconnection, energisation and turbulence in dipolarisation fronts: results of a 3D kinetic simulation campaign

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Goldman, Martin; Newman, David; olshevskyi, Vyacheslav; Markidis, Stefano

    2016-04-01

    Dipolarization fronts (DF) are formed by reconnection outflows interacting with the pre-existing environment. These regions are host of important energy exchanges [1], particle acceleration [2] and a complex structure and evolution [3]. Our recent work has investigated these regions via fully kinetic 3D simulations [4]. As reported recently on Nature Physics [3], based on 3D fully kinetic simulations started with a well defined x-line, we observe that in the DF reconnection transitions towards a more chaotic regime. In the fronts an instability devel- ops caused by the local gradients of the density and by the unfavourable acceleration and field line curvature. The consequence is the break up of the fronts in a fashion similar to the classical fluid Rayleigh-Taylor instability with the formation of "fingers" of plasma and embedded magnetic fields. These fingers interact and produce secondary reconnection sites. We present several different diagnostics that prove the existence of these secondary reconnection sites. Each site is surrounded by its own electron diffusion region. At the fronts the ions are generally not magnetized and considerable ion slippage is present. The discovery we present is that electrons are also slipping, forming localized diffusion regions near secondary reconnection sites [1]. The consequence of this discovery is twofold. First, the instability in the fronts has strong energetic implications. We observe that the energy transfer locally is very strong, an order of magnitude stronger than in the "X" line. However, this energy transfer is of both signs as it is natural for a wavy rippling with regions of magnetic to kinetic and regions of kinetic to magnetic energy conversion. Second, and most important for this session, is that MMS should not limit the search for electron diffusion regions to the location marked with X in all reconnection cartoons. Our simulations predict more numerous and perhaps more easily measurable electron diffusion

  1. Catastrophic onset of fast magnetic reconnection with a guide field

    NASA Astrophysics Data System (ADS)

    Cassak, P. A.; Drake, J. F.; Shay, M. A.

    2007-05-01

    It was recently shown that the slow (collisional) Sweet-Parker and the fast (collisionless) Hall magnetic reconnection solutions simultaneously exist for a wide range of resistivities; reconnection is bistable [Cassak, Shay, and Drake, Phys. Rev. Lett., 95, 235002 (2005)]. When the thickness of the dissipation region becomes smaller than a critical value, the Sweet-Parker solution disappears and fast reconnection ensues, potentially explaining how large amounts of magnetic free energy can accrue without significant release before the onset of fast reconnection. Two-fluid numerical simulations extending the previous results for anti-parallel reconnection (where the critical thickness is the ion skin depth) to component reconnection with a large guide field (where the critical thickness is the thermal ion Larmor radius) are presented. Applications to laboratory experiments of magnetic reconnection and the sawtooth crash are discussed.

  2. 3D palmprint data fast acquisition and recognition

    NASA Astrophysics Data System (ADS)

    Wang, Xiaoxu; Huang, Shujun; Gao, Nan; Zhang, Zonghua

    2014-11-01

    This paper presents a fast 3D (Three-Dimension) palmprint capturing system and develops an efficient 3D palmprint feature extraction and recognition method. In order to fast acquire accurate 3D shape and texture of palmprint, a DLP projector triggers a CCD camera to realize synchronization. By generating and projecting green fringe pattern images onto the measured palm surface, 3D palmprint data are calculated from the fringe pattern images. The periodic feature vector can be derived from the calculated 3D palmprint data, so undistorted 3D biometrics is obtained. Using the obtained 3D palmprint data, feature matching test have been carried out by Gabor filter, competition rules and the mean curvature. Experimental results on capturing 3D palmprint show that the proposed acquisition method can fast get 3D shape information of palmprint. Some initial experiments on recognition show the proposed method is efficient by using 3D palmprint data.

  3. Observations of 3-D Electric Fields and Waves Associated With Reconnection at the Dayside Magnetopause

    NASA Astrophysics Data System (ADS)

    Wilder, F. D.; Ergun, R.; Goodrich, K.; Malaspina, D.; Eriksson, S.; Stawarz, J. E.; Sturner, A. P.; Holmes, J.; Burch, J. L.; Torbert, R. B.; Phan, T.; Le Contel, O.; Goldman, M. V.; Newman, D. L.; Lindqvist, P. A.; Khotyaintsev, Y. V.; Strangeway, R. J.; Russell, C. T.; Giles, B. L.; Pollock, C. J.

    2015-12-01

    The phenomenon of magnetic reconnection, especially at electron scales, is still poorly understood. One process that warrants further investigation is the role of wave phenomenon in mediating magnetic reconnection. Previous observations have shown the presence of electrostatic solitary waves (ESWs) as well as whistler mode waves near the dayside reconnection site. Additionally, recent simulations have suggested that whistler waves might be generated by electron phase space holes associated with ESWs as they propagate along the magnetic separatrix towards the diffusion region. Other observations have shown ESWs with distinct speeds and time scales, suggesting that different instabilities generate the ESWs. NASA's recently launched Magnetospheric Multiscale (MMS) mission presents a unique opportunity to investigate the roles of wave phenomena, such as ESWs and whistlers, in asymmetric reconnection at the dayside magnetopause. We will present 3-D electric and magnetic field data from magnetopause crossings by MMS during its first dayside science phase. Burst mode wave data and electron distributions from all four spacecraft will be analyzed to investigate the origin of these wave phenomena, as well as their impact on the reconnection electric field.

  4. Existence of two MHD reconnection modes in a solar 3D magnetic null point topology

    NASA Astrophysics Data System (ADS)

    Pariat, Etienne; Antiochos, Spiro; DeVore, C. Richard; Dalmasse, Kévin

    2012-07-01

    Magnetic topologies with a 3D magnetic null point are common in the solar atmosphere and occur at different spatial scales: such structures can be associated with some solar eruptions, with the so-called pseudo-streamers, and with numerous coronal jets. We have recently developed a series of numerical experiments that model magnetic reconnection in such configurations in order to study and explain the properties of jet-like features. Our model uses our state-of-the-art adaptive-mesh MHD solver ARMS. Energy is injected in the system by line-tied motion of the magnetic field lines in a corona-like configuration. We observe that, in the MHD framework, two reconnection modes eventually appear in the course of the evolution of the system. A very impulsive one, associated with a highly dynamic and fully 3D current sheet, is associated with the energetic generation of a jet. Before and after the generation of the jet, a quasi-steady reconnection mode, more similar to the standard 2D Sweet-Parker model, presents a lower global reconnection rate. We show that the geometry of the magnetic configuration influences the trigger of one or the other mode. We argue that this result carries important implications for the observed link between observational features such as solar jets, solar plumes, and the emission of coronal bright points.

  5. Kinetic turbulence in 3D collisionless magnetic reconnection with a guide magnetic field

    NASA Astrophysics Data System (ADS)

    Alejandro Munoz Sepulveda, Patricio; Kilian, Patrick; Jain, Neeraj; Büchner, Jörg

    2016-04-01

    The features of kinetic plasma turbulence developed during non-relativistic 3D collisionless magnetic reconnection are still not fully understood. This is specially true under the influence of a strong magnetic guide field, a scenario common in space plasmas such as in the solar corona and also in laboratory experiments such as MRX or VINETA II. Therefore, we study the mechanisms and micro-instabilities leading to the development of turbulence during 3D magnetic reconnection with a fully kinetic PIC code, emphasizing the role of the guide field with an initial setup suitable for the aforementioned environments. We also clarify the relations between these processes and the generation of non-thermal populations and particle acceleration.

  6. 3D meshes of carbon nanotubes guide functional reconnection of segregated spinal explants.

    PubMed

    Usmani, Sadaf; Aurand, Emily Rose; Medelin, Manuela; Fabbro, Alessandra; Scaini, Denis; Laishram, Jummi; Rosselli, Federica B; Ansuini, Alessio; Zoccolan, Davide; Scarselli, Manuela; De Crescenzi, Maurizio; Bosi, Susanna; Prato, Maurizio; Ballerini, Laura

    2016-07-01

    In modern neuroscience, significant progress in developing structural scaffolds integrated with the brain is provided by the increasing use of nanomaterials. We show that a multiwalled carbon nanotube self-standing framework, consisting of a three-dimensional (3D) mesh of interconnected, conductive, pure carbon nanotubes, can guide the formation of neural webs in vitro where the spontaneous regrowth of neurite bundles is molded into a dense random net. This morphology of the fiber regrowth shaped by the 3D structure supports the successful reconnection of segregated spinal cord segments. We further observed in vivo the adaptability of these 3D devices in a healthy physiological environment. Our study shows that 3D artificial scaffolds may drive local rewiring in vitro and hold great potential for the development of future in vivo interfaces. PMID:27453939

  7. 3D meshes of carbon nanotubes guide functional reconnection of segregated spinal explants

    PubMed Central

    Usmani, Sadaf; Aurand, Emily Rose; Medelin, Manuela; Fabbro, Alessandra; Scaini, Denis; Laishram, Jummi; Rosselli, Federica B.; Ansuini, Alessio; Zoccolan, Davide; Scarselli, Manuela; De Crescenzi, Maurizio; Bosi, Susanna; Prato, Maurizio; Ballerini, Laura

    2016-01-01

    In modern neuroscience, significant progress in developing structural scaffolds integrated with the brain is provided by the increasing use of nanomaterials. We show that a multiwalled carbon nanotube self-standing framework, consisting of a three-dimensional (3D) mesh of interconnected, conductive, pure carbon nanotubes, can guide the formation of neural webs in vitro where the spontaneous regrowth of neurite bundles is molded into a dense random net. This morphology of the fiber regrowth shaped by the 3D structure supports the successful reconnection of segregated spinal cord segments. We further observed in vivo the adaptability of these 3D devices in a healthy physiological environment. Our study shows that 3D artificial scaffolds may drive local rewiring in vitro and hold great potential for the development of future in vivo interfaces. PMID:27453939

  8. FAST MAGNETIC RECONNECTION AND SPONTANEOUS STOCHASTICITY

    SciTech Connect

    Eyink, Gregory L.; Lazarian, A.; Vishniac, E. T.

    2011-12-10

    Magnetic field lines in astrophysical plasmas are expected to be frozen-in at scales larger than the ion gyroradius. The rapid reconnection of magnetic-flux structures with dimensions vastly larger than the gyroradius requires a breakdown in the standard Alfven flux-freezing law. We attribute this breakdown to ubiquitous MHD plasma turbulence with power-law scaling ranges of velocity and magnetic energy spectra. Lagrangian particle trajectories in such environments become 'spontaneously stochastic', so that infinitely many magnetic field lines are advected to each point and must be averaged to obtain the resultant magnetic field. The relative distance between initial magnetic field lines which arrive at the same final point depends upon the properties of two-particle turbulent dispersion. We develop predictions based on the phenomenological Goldreich and Sridhar theory of strong MHD turbulence and on weak MHD turbulence theory. We recover the predictions of the Lazarian and Vishniac theory for the reconnection rate of large-scale magnetic structures. Lazarian and Vishniac also invoked 'spontaneous stochasticity', but of the field lines rather than of the Lagrangian trajectories. More recent theories of fast magnetic reconnection appeal to microscopic plasma processes that lead to additional terms in the generalized Ohm's law, such as the collisionless Hall term. We estimate quantitatively the effect of such processes on the inertial-range turbulence dynamics and find them to be negligible in most astrophysical environments. For example, the predictions of the Lazarian and Vishniac theory are unchanged in Hall MHD turbulence with an extended inertial range, whenever the ion skin depth {delta}{sub i} is much smaller than the turbulent integral length or injection-scale L{sub i} .

  9. Physical conditions for fast reconnection evolution in space plasmas

    SciTech Connect

    Ugai, M.

    2012-07-15

    The present paper studies physical conditions for fast reconnection mechanism involving slow shocks to evolve spontaneously in space (high-temperature) plasmas. This is fundamental for onset mechanisms of geomagnetic substorms and solar flares. It is demonstrated that reconnection evolution strongly depends on effective resistivity available in space plasmas as well as on dimensions of initial current sheet. If a current sheet is sufficiently thin, fast reconnection spontaneously evolves only when resistivity is locally enhanced around X reconnection point. This is because in space plasmas reconnection flows cause vital current concentration locally around X point. For current-driven anomalous resistivity, the resulting resistivity is automatically localized around X point, so fast reconnection mechanism can be realized. On the other hand, for uniform or Spitzer resistivity, any fast reconnection cannot grow; in particular, Spitzer resistivity is reduced around X point because of Joule heating. Regarding reconnection simulations (either fluid or particle), unless numerical resistivities are made negligibly small, they seriously mask the effects of physical resistivity, leading to a misleading conclusion that reconnection evolution is little influenced by plasma resistivity.

  10. Measurements of Fast Magnetic Reconnection Driven by Relativistic Electrons

    NASA Astrophysics Data System (ADS)

    Raymond, Anthony; McKelvey, Andrew; Zulick, Calvin; Chuanfei, Dong; Maksimchuk, Anatoly; Thomas, Alexander; Yanovsky, Victor; Krushelnick, Karl; Willingale, Louise; Chykov, Vladimir; Nilson, Phil; Chen, Hui; Williams, Gerald; Bhattacharjee, Amitava; Fox, Will

    2015-11-01

    Magnetic reconnection is a process whereby opposing magnetic field lines are forced together and topologically rearrange, resulting in lower magnetic potential energy and in corresponding plasma heating. Such occurrences are ubiquitous in astrophysics as well as appearing in laboratory plasmas such as in ICF in the form of instabilities. We report measurements in the domain of ultra-fast, ultra-intense lasers, in which the mechanism responsible follows from radially expanding surface electrons with v ~ c . Results are compared from two laser facilities (HERCULES and Omega EP), both of which produced two relativistic intensity pulses focused within close proximity onto copper foils. A spherical X-ray crystal was used to image the Kα radiation induced by electron currents, revealing the midplane diffusion region wherein electrons are accelerated into the target by the electric field generated during reconnection. The characteristics of this signal are studied as a function of the focal spot separation, laser energy, and pulse duration. The results are then compared to 3D PIC simulations.

  11. Slip versus Field-Line Mapping in Describing 3D Reconnection of Coronal Magnetic Fields

    NASA Astrophysics Data System (ADS)

    Titov, V. S.; Mikic, Z.; Torok, T.; Downs, C.; Lionello, R.; Linker, J.

    2015-12-01

    We demonstrate two techniques for describing the structure of the coronal magnetic field and its evolution due to reconnection in numerical 3D simulations of the solar corona and CMEs. These techniques employ two types of mapping of the boundary of the computational domain on itself. One of them is defined at a given time moment via connections of the magnetic field lines to their opposite endpoints. The other mapping, called slip mapping, relates field line endpoints at two different time moments and allows one to identify the slippage of plasma elements due to resistivity across field lines for a given time interval (Titov et al. 2009). The distortion of each of these mappings can be measured by using the so-called squashing factor Q (Titov 2007). The high-Q layers computed for the first and second mappings define, respectively, (quasi-)separatrix surfaces and reconnection fronts in evolving magnetic configurations. Analyzing these structural features, we are able to reveal topologically different domains and reconnected flux systems in the configurations, in particular, open, closed and disconnected magnetic flux tubes, as well as quantify the related magnetic flux transfer. Comparison with observations makes it possible also to relate these features to observed morphological elements such as flare loops and ribbons, and EUV dimmings. We illustrate these general techniques by applying them to particular data-driven MHD simulations. *Research supported by NASA's HSR and LWS Programs, and NSF/SHINE and NSF/FESD.

  12. ONSET OF FAST MAGNETIC RECONNECTION IN PARTIALLY IONIZED GASES

    SciTech Connect

    Malyshkin, Leonid M.; Zweibel, Ellen G. E-mail: zweibel@astro.wisc.edu

    2011-10-01

    We consider quasi-stationary two-dimensional magnetic reconnection in a partially ionized incompressible plasma. We find that when the plasma is weakly ionized and the collisions between the ions and the neutral particles are significant, the transition to fast collisionless reconnection due to the Hall effect in the generalized Ohm's law is expected to occur at much lower values of the Lundquist number, as compared to a fully ionized plasma case. We estimate that these conditions for fast reconnection are satisfied in molecular clouds and in protostellar disks.

  13. Fast Magnetic Reconnection: Bridging Laboratory and Space Plasma Physics

    SciTech Connect

    Bhattacharjee, Amitava

    2012-02-16

    Recent developments in experimental and theoretical studies of magnetic reconnection hold promise for providing solutions to outstanding problems in laboratory and space plasma physics. Examples include sawtooth crashes in tokamaks, substorms in the Earth’s Magnetosphere, eruptive solar flares, and more recently, fast reconnection in laser-produced high energy density plasmas. In each of these examples, a common and long-standing challenge has been to explain why fast reconnection proceeds rapidly from a relatively quiescent state. In this talk, we demonstrate the advantages of viewing these problems and their solutions from a common perspective. We focus on some recent, surprising discoveries regarding the role of secondary plasmoid instabilities of thin current sheets. Nonlinearly, these instabilities lead to fast reconnection rates that are very weakly dependent on the Lundquist number of the plasma.

  14. Calibrating MMS Electron Drift Instrument (EDI) Ambient Electron Flux Measurements and Characterizing 3D Electric Field Signatures of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Shuster, J. R.; Torbert, R. B.; Vaith, H.; Argall, M. R.; Li, G.; Chen, L. J.; Ergun, R. E.; Lindqvist, P. A.; Marklund, G. T.; Khotyaintsev, Y. V.; Russell, C. T.; Magnes, W.; Le Contel, O.; Pollock, C. J.; Giles, B. L.

    2015-12-01

    The electron drift instruments (EDIs) onboard each MMS spacecraft are designed with large geometric factors (~0.01cm2 str) to facilitate detection of weak (~100 nA) electron beams fired and received by the two gun-detector units (GDUs) when EDI is in its "electric field mode" to determine the local electric and magnetic fields. A consequence of the large geometric factor is that "ambient mode" electron flux measurements (500 eV electrons having 0°, 90°, or 180° pitch angle) can vary depending on the orientation of the EDI instrument with respect to the magnetic field, a nonphysical effect that requires a correction. Here, we present determinations of the θ- and ø-dependent correction factors for the eight EDI GDUs, where θ (ø) is the polar (azimuthal) angle between the GDU symmetry axis and the local magnetic field direction, and compare the corrected fluxes with those measured by the fast plasma instrument (FPI). Using these corrected, high time resolution (~1,000 samples per second) ambient electron fluxes, combined with the unprecedentedly high resolution 3D electric field measurements taken by the spin-plane and axial double probes (SDP and ADP), we are equipped to accurately detect electron-scale current layers and electric field waves associated with the non-Maxwellian (anisotropic and agyrotropic) particle distribution functions predicted to exist in the reconnection diffusion region. We compare initial observations of the diffusion region with distributions and wave analysis from PIC simulations of asymmetric reconnection applicable for modeling reconnection at the Earth's magnetopause, where MMS will begin Science Phase 1 as of September 1, 2015.

  15. Fast magnetic reconnection in three-dimensional magnetohydrodynamics simulations

    SciTech Connect

    Pang Bijia; Pen, U.-L.; Vishniac, Ethan T.

    2010-10-15

    A constructive numerical example of fast magnetic reconnection in a three-dimensional periodic box is presented. Reconnection is initiated by a strong, localized perturbation to the field lines. The solution is intrinsically three-dimensional and its gross properties do not depend on the details of the simulations. {approx}30% of the magnetic energy is released in an event which lasts about one Alfven time, but only after a delay during which the field lines evolve into a critical configuration. The physical picture of the process is presented. The reconnection regions are dynamical and mutually interacting. In the comoving frame of these regions, reconnection occurs through a x-like point, analogous to Petschek reconnection. The dynamics appear to be driven by global flows, not local processes.

  16. 3D fast wavelet network model-assisted 3D face recognition

    NASA Astrophysics Data System (ADS)

    Said, Salwa; Jemai, Olfa; Zaied, Mourad; Ben Amar, Chokri

    2015-12-01

    In last years, the emergence of 3D shape in face recognition is due to its robustness to pose and illumination changes. These attractive benefits are not all the challenges to achieve satisfactory recognition rate. Other challenges such as facial expressions and computing time of matching algorithms remain to be explored. In this context, we propose our 3D face recognition approach using 3D wavelet networks. Our approach contains two stages: learning stage and recognition stage. For the training we propose a novel algorithm based on 3D fast wavelet transform. From 3D coordinates of the face (x,y,z), we proceed to voxelization to get a 3D volume which will be decomposed by 3D fast wavelet transform and modeled after that with a wavelet network, then their associated weights are considered as vector features to represent each training face . For the recognition stage, an unknown identity face is projected on all the training WN to obtain a new vector features after every projection. A similarity score is computed between the old and the obtained vector features. To show the efficiency of our approach, experimental results were performed on all the FRGC v.2 benchmark.

  17. Investigations on Sawtooth Reconnection in ASDEX Upgrade Tokamak Discharges Using the 3D Non-linear Two-fluid MHD Code M3D-C1

    NASA Astrophysics Data System (ADS)

    Krebs, Isabel; Jardin, Stephen C.; Igochine, Valentin; Guenter, Sibylle; Hoelzl, Matthias; ASDEX Upgrade Team

    2014-10-01

    We study sawtooth reconnection in ASDEX Upgrade tokamak plasmas by means of 3D non-linear two-fluid MHD simulations in toroidal geometry using the high-order finite element code M3D-C1. Parameters and equilibrium of the simulations are based on typical sawtoothing ASDEX Upgrade discharges. The simulation results are compared to features of the experimental observations such as the sawtooth crash time and frequency, the evolution of the safety factor profile and the 3D evolution of the temperature. 2D ECE imaging measurements during sawtooth crashes in ASDEX Upgrade indicate that the heat is transported out of the core through a narrow poloidally localized region. We investigate if incomplete sawtooth reconnection can be seen in the simulations which is suggested by soft X-ray tomography measurements in ASDEX Upgrade showing that an (m = 1, n = 1) perturbation is typically observed to survive the sawtooth crash and approximately maintain its radial position.

  18. Fast 3D shape measurements using laser speckle projection

    NASA Astrophysics Data System (ADS)

    Schaffer, Martin; Grosse, Marcus; Harendt, Bastian; Kowarschik, Richard

    2011-05-01

    3D measurement setups based on structured light projection are widely used for many industrial applications. Due to intense research in the past the accuracy is comparably high in connection with relatively low cost of the equipment. But facing higher acquisition rates in industries especially for chain assembling lines there are still hurdles to take when accelerating 3D measurements and at the same time retaining accuracies. We developed a projection technique that uses laser speckles to enable fast 3D measurements with statistically structured light patterns. In combination with a temporal correlation technique dense and accurate 3D reconstructions at nearly video rate can be achieved.

  19. Increased Speed: 3D Silicon Sensors. Fast Current Amplifiers

    SciTech Connect

    Parker, Sherwood; Kok, Angela; Kenney, Christopher; Jarron, Pierre; Hasi, Jasmine; Despeisse, Matthieu; Da Via, Cinzia; Anelli, Giovanni; /CERN

    2012-05-07

    The authors describe techniques to make fast, sub-nanosecond time resolution solid-state detector systems using sensors with 3D electrodes, current amplifiers, constant-fraction comparators or fast wave-form recorders, and some of the next steps to reach still faster results.

  20. Fast sawtooth reconnection at realistic Lundquist numbers

    NASA Astrophysics Data System (ADS)

    Günter, S.; Yu, Q.; Lackner, K.; Bhattacharjee, A.; Huang, Y.-M.

    2015-01-01

    Magnetic reconnection, a ubiquitous phenomenon in astrophysics, space science and magnetic confinement research, frequently proceeds much faster than predicted by simple resistive MHD theory. Acceleration can result from the break-up of the thin Sweet-Parker current sheet into plasmoids, or from two-fluid effects decoupling mass and magnetic flux transport over the ion inertial length {{v}A}/{ωci} or the drift scale \\sqrt{{{T}e}/{{m}i}}/{ωci}, depending on the absence or presence of a strong magnetic guide field. We describe new results on the modelling of sawtooth reconnection in a simple tokamak geometry (circular cylindrical equilibrium) pushed to realistic Lundquist numbers for present day tokamaks. For the resistive MHD case, the onset criteria and the influence of plasmoids on the reconnection process agree well with earlier results found in the case of vanishing magnetic guide fields. While plasmoids are also observed in two-fluid calculations, they do not dominate the reconnection process for the range of plasma parameters considered in this study. In the two-fluid case they form as a transient phenomenon only. The reconnection times become weakly dependent on the S-value and for the most complete model—including two-fluid effects and equilibrium temperature and density gradients—agree well with those experimentally found on ASDEX Upgrade ≤ft(≤slant 100 μ s\\right).

  1. Trigger of Fast Reconnection via Collapsing Current Sheets

    NASA Astrophysics Data System (ADS)

    Tenerani, A.; Velli, M.; Rappazzo, A. F.; Pucci, F.

    2015-12-01

    It has been widely believed that reconnection is the underlying mechanism of many explosive processes observed both in astrophysical and laboratory plasmas. However, both the questions of how magnetic reconnection is triggered in high Lundquist (S) and Reynolds (R) number plasmas, and how it can then occur on fast, ideal, time-scales remain open. Indeed, it has been argued that fast reconnection rates could be achieved once kinetic scales are reached, or, alternatively, by the onset of the so-called plasmoid instability within Sweet-Parker current sheets. However, it has been shown recently that a tearing mode instability (the "ideal tearing") can grow on an ideal, i.e., S-independent, timescale once the width a of a current sheet becomes thin enough with respect to its macroscopic length L, a/L ~ S-1/3. This suggests that current sheet thinning down to such a threshold aspect ratio —much larger, for S>>1, than the Sweet-Parker one that scales as a/L ~ S-1/2— might provide the trigger for fast reconnection even within the fluid plasma framework. Here we discuss the transition to fast reconnection by studying with visco-resistive MHD simulations the onset and evolution of the tearing instability within a single collapsing current sheet. We indeed show that the transition to a fast tearing mode instability takes place when an inverse aspect ratio of the order of the threshold a/L ~ S-1/3 is reached, and that the secondary current sheets forming nonlinearly become the source of a succession of recursive tearing instabilities. The latter is reminiscent of the fractal reconnection model of flares, which we modify in the light of the "ideal tearing" scenario.

  2. Simulation of the 3-D Evolution of Electron Scale Magnetic Reconnection - Motivated by Laboratory Experiments Predictions for MMS

    NASA Astrophysics Data System (ADS)

    Buechner, J.; Jain, N.; Sharma, A.

    2013-12-01

    The four s/c of the Magnetospheric Multiscale (MMS) mission, to be launched in 2014, will use the Earth's magnetosphere as a laboratory to study the microphysics of three fundamental plasma processes. One of them is magnetic reconnection, an essentially multi-scale process. While laboratory experiments and past theoretical investigations have shown that important processes necessary to understand magnetic reconnection take place at electron scales the MMS mission for the first time will be able to resolve these scales by in space observations. For the measurement strategy of MMS it is important to make specific predictions of the behavior of current sheets with a thickness of the order of the electron skin depth which play an important role in the evolution of collisionless magnetic reconnection. Since these processes are highly nonlinear and non-local numerical simulation is needed to specify the current sheet evolution. Here we present new results about the nonlinear evolution of electron-scale current sheets starting from the linear stage and using 3-D electron-magnetohydrodynamic (EMHD) simulations. The growth rates of the simulated instabilities compared well with the growth rates obtained from linear theory. Mechanisms and conditions of the formation of flux ropes and of current filamentation will be discussed in comparison with the results of fully kinetic simulations. In 3D the X- and O-point configurations of the magnetic field formed in reconnection planes alternate along the out-of-reconnection-plane direction with the wavelength of the unstable mode. In the presence of multiple reconnection sites, the out-of-plane magnetic field can develop nested structure of quadrupoles in reconnection planes, similar to the 2-D case, but now with variations in the out-of-plane direction. The structures of the electron flow and magnetic field in 3-D simulations will be compared with those in 2-D simulations to discriminate the essentially 3D features. We also discuss

  3. Fast and precise 3D fluorophore localization by gradient fitting

    NASA Astrophysics Data System (ADS)

    Ma, Hongqiang; Xu, Jianquan; Jin, Jingyi; Gao, Ying; Lan, Li; Liu, Yang

    2016-02-01

    Astigmatism imaging is widely used to encode the 3D position of fluorophore in single-particle tracking and super-resolution localization microscopy. Here, we present a fast and precise localization algorithm based on gradient fitting to decode the 3D subpixel position of the fluorophore. This algorithm determines the center of the emitter by finding the position with the best-fit gradient direction distribution to the measured point spread function (PSF), and can retrieve the 3D subpixel position of the emitter in a single iteration. Through numerical simulation and experiments with mammalian cells, we demonstrate that our algorithm yields comparable localization precision to the traditional iterative Gaussian function fitting (GF) based method, while exhibits over two orders-of-magnitude faster execution speed. Our algorithm is a promising online reconstruction method for 3D super-resolution microscopy.

  4. Instability, Turbulence, and 3D Magnetic Reconnection in a Line-Tied, Zero Net Current Screw Pinch

    NASA Astrophysics Data System (ADS)

    Brookhart, Matthew I.; Stemo, Aaron; Zuberbier, Amanda; Zweibel, Ellen; Forest, Cary B.

    2015-04-01

    This Letter reports the first experimental investigation into a line-tied plasma with a reversed current profile. Discrete current sources create a cylindrical plasma equilibrium with an axial field and zero net current. Detailed magnetic measurements show that an internal m =1 mode with no external character grows exponentially. The nonlinear evolution of the mode drives 3D reconnection events that reorganize the plasma equilibrium. The plasma is turbulent and exhibits reconnection events on a range of scales. These data are consistent with recent simulations of coronal loops and the nanoflare coronal heating mechanism.

  5. Connecting Global Measures of 3D Magnetic Reconnection to Local Kinetic Physics

    SciTech Connect

    Daughton, William Scott

    2015-07-16

    After giving the motivation for the work, slides present the topic under the following headings: Description of LAPD experiment; Actual simulation setup; Simple kinetic theory of ined-tied tearing; Diagnostics to characterizing 3D reconnection; Example #1 - short-tied system; and Example #2 - long line-tied system. Colorful simulations are shown for quasipotential vs field line exponentiation, field line integrated Ohms Law, and correlation with agyrotopy & energy conversion for example #1; and evolution of current density for largest case, field exponentiation vs quasi-potential, and time evolution of magnetic field lines for example #2. To satisfy line-tied boundary conditions, there is need for superposition of oblique modes--the simple two-mode approximation works surprisingly well. For force-free layers with bg >1, the fastest growing periodic modes are oblique with kxλ ~0.5. This implies a minimum length of Ly > 2πλbg. There are strong correlations between σ → Ξ → A0e (observable with spacecraft). Electron pressure tensor is the dominant non-ideal term.

  6. Fast Mode Decision for 3D-HEVC Depth Intracoding

    PubMed Central

    Li, Nana; Wu, Qinggang

    2014-01-01

    The emerging international standard of high efficiency video coding based 3D video coding (3D-HEVC) is a successor to multiview video coding (MVC). In 3D-HEVC depth intracoding, depth modeling mode (DMM) and high efficiency video coding (HEVC) intraprediction mode are both employed to select the best coding mode for each coding unit (CU). This technique achieves the highest possible coding efficiency, but it results in extremely large encoding time which obstructs the 3D-HEVC from practical application. In this paper, a fast mode decision algorithm based on the correlation between texture video and depth map is proposed to reduce 3D-HEVC depth intracoding computational complexity. Since the texture video and its associated depth map represent the same scene, there is a high correlation among the prediction mode from texture video and depth map. Therefore, we can skip some specific depth intraprediction modes rarely used in related texture CU. Experimental results show that the proposed algorithm can significantly reduce computational complexity of 3D-HEVC depth intracoding while maintaining coding efficiency. PMID:24963512

  7. Analysis of Fast Reconnection in MRX

    NASA Astrophysics Data System (ADS)

    Yamada, M.; Ji, H.; Kulsrud, R.; Kuritsyn, A.; Terry, S.

    2002-11-01

    In MRX (Magnetic Reconnection Experiment), the detailed magnetic field structure and the plasma profiles of the neutral sheet have been measured and evidence for non-MHD physics mechanisms has been obtained(M. Yamada et al., Phys. Plasmas, 7), 1781 (2000). As the electron-ion collision frequency is reduced, the reconnection rate has been observed to be significantly enhanced over the classical value. Both electrostatic and magnetic turbulence of lower hybrid frequency range has been observed in the low collisionality regime. The amplitude of magnetic fluctuation is the largest at the center of neutral sheet while electropotential fluctuations peak at the edge of the sheath. To describe the physics of this region, much thought has been given to the `` generalized" Ohm's law where electrons and ions are treated separately. In this `` E-MHD" region electrons but not ions are considered to be magnetized and the lower hybrid wave can be connected continuously to an obliquely propagating Whistler wave(R.L. Stenzel and J.M. Urrutia, Phys. Plasmas, 7), 4450 (2000). In this paper we examine the entire spectrum of waves from the electron cyclotron frequency down to the ion cyclotron frequency, focusing on comparisons with the recent experimental data from the MRX neutral sheet plasmas(H. Ji, et al., this meeting). The physical mechanisms of the observed enhanced resistivity due to these waves will be discussed. This work is supported by DoE, NASA and NSF.

  8. MHD-Epic: Embedded Particle-in-Cell Simulations of Reconnection in Global 3D Extended MHD Simulations

    NASA Astrophysics Data System (ADS)

    Daldorff, L. K. S.; Toth, G.; Borovikov, D.; Gombosi, T. I.; Lapenta, G.

    2014-12-01

    With the new modeling capability in the Space Weather Modeling Framework (SWMF) of embedding an implicit Particle-in-Cell (PIC) model iPIC3D into the BATS-R-US magnetohydrodynamics model (Daldorff et al. 2014, JCP, 268, 236) we are ready to locally handle the full physics of the reconnection and its implications on the full system where globally, away from the reconnection region, a magnetohydrodynamic description is satisfactory. As magnetic reconnection is one of the main drivers in magnetospheric and heliospheric plasma dynamics, the self-consistent description of the electron dynamics in the coupled MHD-EPIC model is well suited for investigating the nature of these systems. We will compare the new embedded MHD-EPIC model with pure MHD and Hall MHD simulations of the Earth's magnetosphere.

  9. Fast Wave Trains Associated with Solar Eruptions: Insights from 3D Thermodynamic MHD Simulations

    NASA Astrophysics Data System (ADS)

    Downs, C.; Liu, W.; Torok, T.; Linker, J.; Mikic, Z.; Ofman, L.

    2015-12-01

    EUV imaging observations during the SDO/AIA era have provided new insights into a variety of wave phenomena occurring in the low solar corona. One example is the observation of quasi-periodic, fast-propagating wave trains that are associated with solar eruptions, including flares and CMEs. While there has been considerable progress in understanding such waves from both an observational and theoretical perspective, it remains a challenge to pin down their physical origin. In this work, we detail our results from a case-study 3D thermodynamic MHD simulation of a coronal mass ejection where quasi-periodic wave trains are generated during the simulated eruption. We find a direct correlation between the onset of non-steady reconnection in the flare current sheet and the generation of quasi-periodic wave train signatures when patchy, collimated downflows interact with the flare arcade. Via forward modeling of SDO/AIA observables, we explore how the appearance of the wave trains is affected by line-of-sight integration and the multi-thermal nature of the coronal medium. We also examine how the wave trains themselves are channeled by natural waveguides formed in 3D by the non-uniform background magnetic field. While the physical association of the reconnection dynamics to the generation of quasi-periodic wave trains appears to be a compelling result, unanswered questions posed from recent observations as well as future prospects will be discussed.

  10. a Fast Method for Measuring the Similarity Between 3d Model and 3d Point Cloud

    NASA Astrophysics Data System (ADS)

    Zhang, Zongliang; Li, Jonathan; Li, Xin; Lin, Yangbin; Zhang, Shanxin; Wang, Cheng

    2016-06-01

    This paper proposes a fast method for measuring the partial Similarity between 3D Model and 3D point Cloud (SimMC). It is crucial to measure SimMC for many point cloud-related applications such as 3D object retrieval and inverse procedural modelling. In our proposed method, the surface area of model and the Distance from Model to point Cloud (DistMC) are exploited as measurements to calculate SimMC. Here, DistMC is defined as the weighted distance of the distances between points sampled from model and point cloud. Similarly, Distance from point Cloud to Model (DistCM) is defined as the average distance of the distances between points in point cloud and model. In order to reduce huge computational burdens brought by calculation of DistCM in some traditional methods, we define SimMC as the ratio of weighted surface area of model to DistMC. Compared to those traditional SimMC measuring methods that are only able to measure global similarity, our method is capable of measuring partial similarity by employing distance-weighted strategy. Moreover, our method is able to be faster than other partial similarity assessment methods. We demonstrate the superiority of our method both on synthetic data and laser scanning data.

  11. Simulations of 3D Magnetic Merging: Resistive Scalings for Null Point and QSL Reconnection

    NASA Astrophysics Data System (ADS)

    Effenberger, Frederic; Craig, I. J. D.

    2016-01-01

    Starting from an exact, steady-state, force-free solution of the magnetohydrodynamic (MHD) equations, we investigate how resistive current layers are induced by perturbing line-tied three-dimensional magnetic equilibria. This is achieved by the superposition of a weak perturbation field in the domain, in contrast to studies where the boundary is driven by slow motions, like those present in photospheric active regions. Our aim is to quantify how the current structures are altered by the contribution of so-called quasi-separatrix layers (QSLs) as the null point is shifted outside the computational domain. Previous studies based on magneto-frictional relaxation have indicated that despite the severe field line gradients of the QSL, the presence of a null is vital in maintaining fast reconnection. Here, we explore this notion using highly resolved simulations of the full MHD evolution. We show that for the null-point configuration, the resistive scaling of the peak current density is close to J˜η^{-1}, while the scaling is much weaker, i.e. J˜η^{-0.4}, when only the QSL connectivity gradients provide a site for the current accumulation.

  12. A new fast reconnection model in a collisionless regime

    SciTech Connect

    Tsiklauri, David

    2008-11-15

    Based on the first principles [i.e., (i) by balancing the magnetic field advection with the term containing electron pressure tensor nongyrotropic components in the generalized Ohm's law; (ii) using the conservation of mass; and (iii) assuming that the weak magnetic field region width, where electron meandering motion supports electron pressure tensor off-diagonal (nongyrotropic) components, is of the order of electron Larmor radius] a simple model of magnetic reconnection in a collisionless regime is formulated. The model is general, resembling its collisional Sweet-Parker analog in that it is not specific to any initial configuration, e.g., Harris-type tearing unstable current sheet, X-point collapse or otherwise. In addition to its importance from the fundamental point of view, the collisionless reconnection model offers a much faster reconnection rate [M{sub c{sup '}}{sub less}=(c/{omega}{sub pe}){sup 2}/(r{sub L,e}L)] than Sweet-Parker's classical one (M{sub sp}=S{sup -1/2}). The width of the diffusion region (current sheet) in the collisionless regime is found to be {delta}{sub c{sup '}}{sub less}=(c/{omega}{sub pe}){sup 2}/r{sub L,e}, which is independent of the global reconnection scale L and is only prescribed by microphysics (electron inertial length, c/{omega}{sub pe}, and electron Larmor radius, r{sub L,e}). Amongst other issues, the fastness of the reconnection rate alleviates, e.g., the problem of interpretation of solar flares by means of reconnection, as for the typical solar coronal parameters the obtained collisionless reconnection time can be a few minutes, as opposed to Sweet-Parker's equivalent value of less than a day. The new theoretical reconnection rate is compared to the Magnetic Reconnection Experiment device experimental data by Yamada et al. [Phys. Plasmas 13, 052119 (2006)] and Ji et al. [Geophys. Res. Lett. 35, 13106 (2008)], and a good agreement is obtained.

  13. Fast 3D stereo flood simulations in urban areas

    NASA Astrophysics Data System (ADS)

    Hoes, O.; de Haan, G.; Stelling, G.; van Leeuwen, E.; van Dam, A.; Pleumeekers, O.; Schuurmans, W.

    2012-04-01

    Flood propagation models are essential to study floods as it is problematic to collect data during actual floods. Moreover, models are needed to explore the consequences of additional scenarios above the actual flood itself. The results of these model studies are generally graphs with water levels over time for certain locations or maps with the flood extent in an area for different return periods. A main difficulty with these depictions of flood information is that they do not reflect the seriousness of flood impacts well in terms of life-like human experience. Typically, one needs a (near) flood before measures are implemented. Apparently, a graph or map is not the proper material to convince politicians and policy makers, even if they live in the threatened area. The recent introduction of commercially available 3D stereo projectors and high resolution elevation data make it possible to build life-like visualizations of simulations. In our research we explored using 3D stereo, the recently collected elevation data of the Netherlands (20 laser points per m2!) in combination with aerial photographs, and a new fast 2D flood propagation calculation scheme. This scheme (under construction) is able to simulate floods using such high amounts of data points. The model simulates flood propagation on an irregular grid; at locations with large elevation differences (e.g. in urban areas) and fast flowing water, smaller cells are used compared to flat surfaces where the water is not or hardly flowing. The result of our combination is a very detailed flood simulation model that can be used to simulate floods within a fraction of the current calculation time. The opportunities of models and their results increase enormously with fast calculations and visualizations combined. For example, the model allows on the spot exploration of measures during a flood, with the 3D visualization ensuring that flood impacts become clear for decision makers. We will show the preliminary

  14. Fast magnetic reconnection due to anisotropic electron pressure

    NASA Astrophysics Data System (ADS)

    Cassak, Paul; Baylor, Robert; Fermo, Raymond; Beidler, Matthew; Shay, Michael; Swisdak, Marc; Drake, James; Karimabadi, Homa

    2015-11-01

    A new regime of fast magnetic reconnection with an out-of-plane (guide) magnetic field is reported in which the key role is played by an electron pressure anisotropy described by the Chew-Goldberger-Low gyrotropic equations of state in the generalized Ohm's law, which even dominates the Hall term. A description of the physical cause of this behavior is provided and two-dimensional fluid simulations are used to confirm the results. The electron pressure anisotropy causes the out-of-plane magnetic field to develop a quadrupole structure of opposite polarity to the Hall magnetic field and gives rise to dispersive waves. In addition to being important for understanding what causes reconnection to be fast, this mechanism should dominate in plasmas with low plasma beta and a high in-plane plasma beta with electron temperature comparable to or larger than ion temperature, so it could be relevant in the solar wind and some tokamaks.

  15. Fast magnetic reconnection due to anisotropic electron pressure

    NASA Astrophysics Data System (ADS)

    Cassak, P. A.; Baylor, R. N.; Fermo, R. L.; Beidler, M. T.; Shay, M. A.; Swisdak, M.; Drake, J. F.; Karimabadi, H.

    2015-02-01

    A new regime of fast magnetic reconnection with an out-of-plane (guide) magnetic field is reported in which the key role is played by an electron pressure anisotropy described by the Chew-Goldberger-Low gyrotropic equations of state in the generalized Ohm's law, which even dominates the Hall term. A description of the physical cause of this behavior is provided and two-dimensional fluid simulations are used to confirm the results. The electron pressure anisotropy causes the out-of-plane magnetic field to develop a quadrupole structure of opposite polarity to the Hall magnetic field and gives rise to dispersive waves. In addition to being important for understanding what causes reconnection to be fast, this mechanism should dominate in plasmas with low plasma beta and a high in-plane plasma beta with electron temperature comparable to or larger than ion temperature, so it could be relevant in the solar wind and some tokamaks.

  16. Fast magnetic reconnection due to anisotropic electron pressure

    SciTech Connect

    Cassak, P. A.; Baylor, R. N.; Fermo, R. L.; Beidler, M. T.; Shay, M. A.; Swisdak, M.; Drake, J. F.; Karimabadi, H.

    2015-02-15

    A new regime of fast magnetic reconnection with an out-of-plane (guide) magnetic field is reported in which the key role is played by an electron pressure anisotropy described by the Chew-Goldberger-Low gyrotropic equations of state in the generalized Ohm's law, which even dominates the Hall term. A description of the physical cause of this behavior is provided and two-dimensional fluid simulations are used to confirm the results. The electron pressure anisotropy causes the out-of-plane magnetic field to develop a quadrupole structure of opposite polarity to the Hall magnetic field and gives rise to dispersive waves. In addition to being important for understanding what causes reconnection to be fast, this mechanism should dominate in plasmas with low plasma beta and a high in-plane plasma beta with electron temperature comparable to or larger than ion temperature, so it could be relevant in the solar wind and some tokamaks.

  17. 3D magnetic field configuration of small-scale reconnection events in the solar plasma atmosphere

    SciTech Connect

    Shimizu, T.

    2015-10-15

    The outer solar atmosphere, i.e., the corona and the chromosphere, is replete with small energy-release events, which are accompanied by transient brightening and jet-like ejections. These events are considered to be magnetic reconnection events in the solar plasma, and their dynamics have been studied using recent advanced observations from the Hinode spacecraft and other observatories in space and on the ground. These events occur at different locations in the solar atmosphere and vary in their morphology and amount of the released energy. The magnetic field configurations of these reconnection events are inferred based on observations of magnetic fields at the photospheric level. Observations suggest that these magnetic configurations can be classified into two groups. In the first group, two anti-parallel magnetic fields reconnect to each other, yielding a 2D emerging flux configuration. In the second group, helical or twisted magnetic flux tubes are parallel or at a relative angle to each other. Reconnection can occur only between anti-parallel components of the magnetic flux tubes and may be referred to as component reconnection. The latter configuration type may be more important for the larger class of small-scale reconnection events. The two types of magnetic configurations can be compared to counter-helicity and co-helicity configurations, respectively, in laboratory plasma collision experiments.

  18. 3D Dynamics of Magnetopause Reconnection Using Hall-MHD Global Simulations

    NASA Astrophysics Data System (ADS)

    Maynard, K.; Germaschewski, K.; Raeder, J.; Bhattacharjee, A.

    2011-12-01

    Magnetic reconnection at Earth's magnetopause and in the magnetotail is of crucial importance for the dynamics of the global magnetosphere and space weather. Even though the plasma conditions in the magnetosphere are largely in the collisionless regime, most of the existing research using global computational models employ single-fluid magnetohydrodynamics (MHD) with artificial resistivity. Studies of reconnection in simplified, two-dimensional geometries have established that two-fluid and kinetic effects can dramatically alter dynamics and reconnection rates when compared with single-fluid models. These enhanced models also introduce particular signatures, for example a quadrupolar out-of-plane magnetic field component that has already been observed in space by satellite measurements. However, results from simplified geometries cannot be translated directly to the dynamics of three-dimensional magnetospheric reconnection. For instance, magnetic flux originating from the solar wind and arriving at the magnetopause can either reconnect or be advected around the magnetosphere. In this study, we use a new version of the OpenGGCM code that incorporates the Hall term in a Generalized Ohm's Law to study magnetopause reconnection under synthetic solar wind conditions and investigate how reconnection rates and dynamics of flux transfer events depend on the strength of the Hall term. The OpenGGCM, a global model of Earth's magnetosphere, has recently been ported to exploit modern computing architectures like the Cell processor and SIMD capabilities of conventional processors using an automatic code generator. These enhancements provide us with the performance needed to include the computationally expensive Hall physics.

  19. Plasmoid dynamics in 3D resistive MHD simulations of magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Samtaney, R.; Loureiro, N. F.; Uzdensky, D. A.; Schekochihin, A. A.

    2012-04-01

    Magnetic reconnection is a well known plasma process believed to lie at the heart of a variety of phenomena such as sub-storms in the Earth's magnetosphere, solar/stellar and accretion-disk flares, sawteeth activity in fusion devices, etc. During reconnection, the global magnetic field topology changes rapidly, leading to the violent release of magnetic energy. Over the past few years, the basic understanding of this fundamental process has undergone profound changes. The validity of the most basic, and widely accepted, reconnection paradigm - the famous Sweet-Parker (SP) model, which predicts that, in MHD, reconnection is extremely slow, its rate scaling as S-1/2, where S is the Lundquist number of the system - has been called into question as it was analytically demonstrated that, for S ≫ 1, SP-like current sheets are violently unstable to the formation of a large number of secondary islands, or plasmoids. Subsequent numerical simulations in 2D have confirmed the validity of the linear theory, and shown that plasmoids quickly grow to become wider than the thickness of the original SP current sheet, thus effectively changing the underlying reconnection geometry. Ensuing numerical work has revealed that the process of plasmoid formation, coalescence and ejection from the sheet drastically modifies the steady state picture assumed by Sweet and Parker, and leads to the unexpected result that MHD reconnection is independent of S. In this talk, we review these recent developments and present results from three-dimensional simulations of high-Lundquist number reconnection in the presence of a guide field. A parametric study varying the strength of the guide field is presented. Plasmoid flux and width distribution functions are quantified and compared with corresponding two dimensional simulations.

  20. 3D Ion and Electron Distribution Function Measurements from the Fast Plasma Investigation on the Magnetospheric Multiscale Mission

    NASA Astrophysics Data System (ADS)

    Giles, B. L.; Pollock, C. J.; Avanov, L. A.; Barrie, A. C.; Burch, J. L.; Chandler, M. O.; Clark, G. B.; Coffey, V. N.; Dickson, C.; Dorelli, J.; Ergun, R. E.; Fuselier, S. A.; Gershman, D. J.; Gliese, U.; Holland, M. P.; Jacques, A. D.; Kreisler, S.; Lavraud, B.; MacDonald, E.; Mauk, B.; Moore, T. E.; Mukai, T.; Nakamura, R.; Paterson, W. R.; Rager, A. C.; Saito, Y.; Salo, C.; Sauvaud, J. A.; Torbert, R. B.; Vinas, A. F.; Yokota, S.

    2015-12-01

    The primary focus of the Magnetospheric Multiscale (MMS) mission, launched in March 2015, is magnetic reconnection and associated processes. Understanding hinges critically on the kinetic physics that allows reconnection to take place. The Fast Plasma Investigation (FPI) provides electron and ion distribution functions at 4.5s cadence and, for select periods of time, at cadences of 30ms for electrons and 150ms for ions. These select time periods are chosen after in situ acquisition based on inspection of the low resolution data. Thus the FPI provides, independent of spacecraft spin rate, the time resolution needed to resolve the small, fast-moving reconnection diffusion regions. The first mission phase focuses on the dayside magnetopause and this presentation is intended to demonstrate the capabilities of FPI to resolve the important spatial scales relevant to the reconnection process. Magnetopause and other boundary crossings will be examined and the phase-space trajectories identified at the tetrahedral satellite locations through analysis of the 3D distribution functions.

  1. Undersampling k-space using fast progressive 3D trajectories.

    PubMed

    Spiniak, Juan; Guesalaga, Andres; Mir, Roberto; Guarini, Marcelo; Irarrazaval, Pablo

    2005-10-01

    In 3D MRI, sampling k-space with traditional trajectories can be excessively time-consuming. Fast imaging trajectories are used in an attempt to efficiently cover the k-space and reduce the scan time without significantly affecting the image quality. In many applications, further reductions in scan time can be achieved via undersampling of the k-space; however, no clearly optimal method exists. In most 3D trajectories the k-space is divided into regions that are sampled with shots that share a common geometry (e.g., spirals). A different approach is to design trajectories that gradually but uniformly cover the k-space. In the current work, successive shots progressively add sampled regions to the 3D frequency space. By cutting the sequence short, a natural undersampled method is obtained. This can be particularly efficient because in these types of trajectories the contribution of new information by later shots is less significant. In this work the performance of progressive trajectories for different degrees of undersampling is assessed with trajectories based on missile guidance (MG) ideas. The results show that the approach can be efficient in terms of reducing the scan time, and performs better than the stack of spirals (SOS) technique, particularly under nonideal conditions. PMID:16142719

  2. Fast magnetic reconnection with plasmoid / current sheet ejection events in laboratory experiments

    NASA Astrophysics Data System (ADS)

    Inomoto, Michiaki; Ono, Yasushi; Hayashi, Yoshinori

    2012-07-01

    Non-steady and fast magnetic reconnections due to plasmoid or current sheet ejection events have been investigated in laboratory experiments using TS-3, TS-4 and UTST plasma merging devices in the University of Tokyo. In these devices, magnetic reconnection is induced by two different schemes, a) push reconnection driven by flux injection from the upstream region, b) pull reconnection driven by flux extraction to the downstream region. Current sheet or plasmoid ejection events are observed in these reconnection experiments particularly with strong guide magnetic field parallel to the reconnection electric field. In push reconnection experiments, anomalous resistivity is induced by the ion's kinetic effect (meandering motion) when the current sheet width is compressed shorter than the ion gyroradius by the strongly injected inflow flux. This fast reconnection regime does not involve plasmoid / current sheet ejection events. On the other hand, the guide field reduces the ion gyroradius and suppresses the onset of the anomalous resistivity, providing slow and steady magnetic reconnection. Impulsive fast reconnection with strong guide field develops, nevertheless, due to plasmoid / current sheet ejection events in pull and push reconnection experiments with extremely large external driving forces. In such a situation, the inflow flux is forcedly pushed into the reconnection region even faster than the maximal reconnection rate, resulting in flux pile up in front of the diffusion region. This piled flux induces large current density inside the current sheet in which plasmoid structure with closed flux surface is formed in pull reconnection case. The induced large current density or plasmoid is then ejected from the diffusion region with significant increase of reconnection electric field. As a result, magnetic reconnection condition with even larger reconnection rate than that obtained by anomalous resistivity was achieved under strong guide field and large external

  3. Generation of field-aligned currents and Alfven waves by 3D magnetic reconnection

    SciTech Connect

    Ma, Z.W.; Lee, L.C.; Otto, A.

    1995-07-01

    The authors have carried out a three-dimensional compressible MHD simulation to study the generation of field-aligned currents (FAC`s) and Alfven waves by magnetic reconnection for locally antiparallel magnetic fields across the current sheet. Reconnection is triggered by a localized resistivity. The results indicate that both FAC`s and Alfven waves are generated by the three-dimensional reconnection process. Two pairs of FAC`s are generated on each side of current sheet. The polarities of the resulting FAC pair in the leading bulge region are opposite to those of a FAC pair in the trailing quasi-steady region. It is further found that a large portion of the FAC`s ({approximately}40%) is located in the closed field line region. They examine the Walen relation between FAC and parallel vorticity and find that Alfven waves are generated and propagate away from the reconnection site. They discuss the relevance of the results to the observed Region 1 FAC`s at noon. 15 refs., 4 figs.

  4. Fast fully 3-D image reconstruction in PET using planograms.

    PubMed

    Brasse, D; Kinahan, P E; Clackdoyle, R; Defrise, M; Comtat, C; Townsend, D W

    2004-04-01

    We present a method of performing fast and accurate three-dimensional (3-D) backprojection using only Fourier transform operations for line-integral data acquired by planar detector arrays in positron emission tomography. This approach is a 3-D extension of the two-dimensional (2-D) linogram technique of Edholm. By using a special choice of parameters to index a line of response (LOR) for a pair of planar detectors, rather than the conventional parameters used to index a LOR for a circular tomograph, all the LORs passing through a point in the field of view (FOV) lie on a 2-D plane in the four-dimensional (4-D) data space. Thus, backprojection of all the LORs passing through a point in the FOV corresponds to integration of a 2-D plane through the 4-D "planogram." The key step is that the integration along a set of parallel 2-D planes through the planogram, that is, backprojection of a plane of points, can be replaced by a 2-D section through the origin of the 4-D Fourier transform of the data. Backprojection can be performed as a sequence of Fourier transform operations, for faster implementation. In addition, we derive the central-section theorem for planogram format data, and also derive a reconstruction filter for both backprojection-filtering and filtered-backprojection reconstruction algorithms. With software-based Fourier transform calculations we provide preliminary comparisons of planogram backprojection to standard 3-D backprojection and demonstrate a reduction in computation time by a factor of approximately 15. PMID:15084067

  5. 3-D lookup: Fast protein structure database searches

    SciTech Connect

    Holm. L.; Sander, C.

    1995-12-31

    There are far fewer classes of three-dimensional protein folds than sequence families but the problem of detecting three-dimensional similarities is NP-complete. We present a novel heuristic for identifying 3-D similarities between a query structure and the database of known protein structures. Many methods for structure alignment use a bottom-up approach, identifying first local matches and then solving a combinatorial problem in building up larger clusters of matching substructures. Here the top-down approach is to start with the global comparison and select a rough superimposition using a fast 3-D lookup of secondary structure motifs. The superimposition is then extended to an alignment of C{sup {alpha}} atoms by an iterative dynamic programming step. An all-against-all comparison of 385-representative proteins (150,000 pair comparisons) took 1 day of computer time on a single R8000 processor. In other words, one query structure is scanned against the database in a matter of minutes. The method is rated at 90% reliability at capturing statistically significant similarities. It is useful as a rapid preprocessor to a comprehensive protein structure database search system.

  6. Models of coronal heating, turbulence and fast reconnection.

    PubMed

    Velli, M; Pucci, F; Rappazzo, F; Tenerani, A

    2015-05-28

    Coronal heating is at the origin of the EUV and X-ray emission and mass loss from the sun and many other stars. While different scenarios have been proposed to explain the heating of magnetically confined and open regions of the corona, they must all rely on the transfer, storage and dissipation of the abundant energy present in photospheric motions, which, coupled to magnetic fields, give rise to the complex phenomenology seen at the chromosphere and transition region (i.e. spicules, jets, 'tornadoes'). Here we discuss models and numerical simulations which rely on magnetic fields and electric currents both for energy transfer and for storage in the corona. We will revisit the sources and frequency spectrum of kinetic and electromagnetic energies, the role of boundary conditions, and the routes to small scales required for effective dissipation. Because reconnection in current sheets has been, and still is, one of the most important processes for coronal heating, we will also discuss recent aspects concerning the triggering of reconnection instabilities and the transition to fast reconnection. PMID:25897086

  7. Models of coronal heating, turbulence and fast reconnection

    NASA Astrophysics Data System (ADS)

    Velli, M.; Pucci, F.; Rappazzo, F.; Tenerani, A.

    2015-04-01

    Coronal heating is at the origin of the EUV and X-ray emission and mass loss from the sun and many other stars. While different scenarios have been proposed to explain the heating of magnetically confined and open regions of the corona, they must all rely on the transfer, storage and dissipation of the abundant energy present in photospheric motions, which, coupled to magnetic fields, give rise to the complex phenomenology seen at the chromosphere and transition region (i.e. spicules, jets, 'tornadoes'). Here we discuss models and numerical simulations which rely on magnetic fields and electric currents both for energy transfer and for storage in the corona. We will revisit the sources and frequency spectrum of kinetic and electromagnetic energies, the role of boundary conditions, and the routes to small scales required for effective dissipation. Because reconnection in current sheets has been, and still is, one of the most important processes for coronal heating, we will also discuss recent aspects concerning the triggering of reconnection instabilities and the transition to fast reconnection.

  8. Fast reconnection in relativistic plasmas: the magnetohydrodynamics tearing instability revisited

    NASA Astrophysics Data System (ADS)

    Del Zanna, L.; Papini, E.; Landi, S.; Bugli, M.; Bucciantini, N.

    2016-08-01

    Fast reconnection operating in magnetically dominated plasmas is often invoked in models for magnetar giant flares, for magnetic dissipation in pulsar winds, or to explain the gamma-ray flares observed in the Crab nebula, hence its investigation is of paramount importance in high-energy astrophysics. Here we study, by means of two dimensional numerical simulations, the linear phase and the subsequent nonlinear evolution of the tearing instability within the framework of relativistic resistive magnetohydrodynamics, as appropriate in situations where the Alfven velocity approaches the speed of light. It is found that the linear phase of the instability closely matches the analysis in classical MHD, where the growth rate scales with the Lundquist number S as S^-1/2, with the only exception of an enhanced inertial term due to the thermal and magnetic energy contributions. In addition, when thin current sheets of inverse aspect ratio scaling as S^-1/3 are considered, the so-called "ideal" tearing regime is retrieved, with modes growing independently on S and extremely fast, on only a few light crossing times of the sheet length. The overall growth of fluctuations is seen to solely depend on the value of the background Alfven velocity. In the fully nonlinear stage we observe an inverse cascade towards the fundamental mode, with Petschek-type supersonic jets propagating at the external Alfven speed from the X-point, and a fast reconnection rate at the predicted value R~(ln S)^-1.

  9. Global Extended MHD Studies of Fast Magnetic Reconnection

    SciTech Connect

    Breslau J.A.; Jardin, S.C.

    2002-09-18

    Recent experimental and theoretical results have led to two lines of thought regarding the physical processes underlying fast magnetic reconnection. One is based on the traditional Sweet-Parker model but replaces the Spitzer resistivity with an enhanced resistivity caused by electron scattering by ion acoustic turbulence. The other includes the finite gyroradius effects that enter Ohm's law through the Hall and electron pressure gradient terms. A 2-D numerical study, conducted with a new implicit parallel two-fluid code, has helped to clarify the similarities and differences in predictions between these two models and provides some insight into their respective ranges of validity.

  10. Research of Fast 3D Imaging Based on Multiple Mode

    NASA Astrophysics Data System (ADS)

    Chen, Shibing; Yan, Huimin; Ni, Xuxiang; Zhang, Xiuda; Wang, Yu

    2016-02-01

    Three-dimensional (3D) imaging has received increasingly extensive attention and has been widely used currently. Lots of efforts have been put on three-dimensional imaging method and system study, in order to meet fast and high accurate requirement. In this article, we realize a fast and high quality stereo matching algorithm on field programmable gate array (FPGA) using the combination of time-of-flight (TOF) camera and binocular camera. Images captured from the two cameras own a same spatial resolution, letting us use the depth maps taken by the TOF camera to figure initial disparity. Under the constraint of the depth map as the stereo pairs when comes to stereo matching, expected disparity of each pixel is limited within a narrow search range. In the meanwhile, using field programmable gate array (FPGA, altera cyclone IV series) concurrent computing we can configure multi core image matching system, thus doing stereo matching on embedded system. The simulation results demonstrate that it can speed up the process of stereo matching and increase matching reliability and stability, realize embedded calculation, expand application range.

  11. Fast reconnection in relativistic plasmas: the magnetohydrodynamics tearing instability revisited

    NASA Astrophysics Data System (ADS)

    Del Zanna, L.; Papini, E.; Landi, S.; Bugli, M.; Bucciantini, N.

    2016-08-01

    Fast reconnection operating in magnetically dominated plasmas is often invoked in models for magnetar giant flares, for magnetic dissipation in pulsar winds, or to explain the gamma-ray flares observed in the Crab nebula; hence, its investigation is of paramount importance in high-energy astrophysics. Here we study, by means of two-dimensional numerical simulations, the linear phase and the subsequent non-linear evolution of the tearing instability within the framework of relativistic resistive magnetohydrodynamics (MHD), as appropriate in situations where the Alfvén velocity approaches the speed of light. It is found that the linear phase of the instability closely matches the analysis in classical MHD, where the growth rate scales with the Lundquist number S as S-1/2, with the only exception of an enhanced inertial term due to the thermal and magnetic energy contributions. In addition, when thin current sheets of inverse aspect ratio scaling as S-1/3 are considered, the so-called ideal tearing regime is retrieved, with modes growing independently of S and extremely fast, on only a few light crossing times of the sheet length. The overall growth of fluctuations is seen to solely depend on the value of the background Alfvén velocity. In the fully non-linear stage, we observe an inverse cascade towards the fundamental mode, with Petschek-type supersonic jets propagating at the external Alfvén speed from the X-point, and a fast reconnection rate at the predicted value {R}˜ (ln S)^{-1}.

  12. Three-dimensional fast magnetic reconnection driven by relativistic ultraintense femtosecond lasers.

    PubMed

    Ping, Y L; Zhong, J Y; Sheng, Z M; Wang, X G; Liu, B; Li, Y T; Yan, X Q; He, X T; Zhang, J; Zhao, G

    2014-03-01

    Three-dimensional fast magnetic reconnection driven by two ultraintense femtosecond laser pulses is investigated by relativistic particle-in-cell simulation, where the two paralleled incident laser beams are shot into a near-critical plasma layer to form a magnetic reconnection configuration in self-generated magnetic fields. A reconnection X point and out-of-plane quadrupole field structures associated with magnetic reconnection are formed. The reconnection rate is found to be faster than that found in previous two-dimensional Hall magnetohydrodynamic simulations and electrostatic turbulence contribution to the reconnection electric field plays an essential role. Both in-plane and out-of-plane electron and ion accelerations up to a few MeV due to the magnetic reconnection process are also obtained. PMID:24730781

  13. Fast magnetic reconnection supported by sporadic small-scale Petschek-type shocks

    SciTech Connect

    Shibayama, Takuya Nakabou, Takashi; Kusano, Kanya; Miyoshi, Takahiro; Vekstein, Grigory

    2015-10-15

    Standard magnetohydrodynamic (MHD) theory predicts reconnection rate that is far too slow to account for a wide variety of reconnection events observed in space and laboratory plasmas. Therefore, it was commonly accepted that some non-MHD (kinetic) effects play a crucial role in fast reconnection. A recently renewed interest in simple MHD models is associated with the so-called plasmoid instability of reconnecting current sheets. Although it is now evident that this effect can significantly enhance the rate of reconnection, many details of the underlying multiple-plasmoid process still remain controversial. Here, we report results of a high-resolution computer simulation which demonstrate that fast albeit intermittent magnetic reconnection is sustained by numerous small-scale Petschek-type shocks spontaneously formed in the current sheet due to its plasmoid instability.

  14. 3D RISM theory with fast reciprocal-space electrostatics

    SciTech Connect

    Heil, Jochen; Kast, Stefan M.

    2015-03-21

    The calculation of electrostatic solute-solvent interactions in 3D RISM (“three-dimensional reference interaction site model”) integral equation theory is recast in a form that allows for a computational treatment analogous to the “particle-mesh Ewald” formalism as used for molecular simulations. In addition, relations that connect 3D RISM correlation functions and interaction potentials with thermodynamic quantities such as the chemical potential and average solute-solvent interaction energy are reformulated in a way that calculations of expensive real-space electrostatic terms on the 3D grid are completely avoided. These methodical enhancements allow for both, a significant speedup particularly for large solute systems and a smoother convergence of predicted thermodynamic quantities with respect to box size, as illustrated for several benchmark systems.

  15. 3D RISM theory with fast reciprocal-space electrostatics.

    PubMed

    Heil, Jochen; Kast, Stefan M

    2015-03-21

    The calculation of electrostatic solute-solvent interactions in 3D RISM ("three-dimensional reference interaction site model") integral equation theory is recast in a form that allows for a computational treatment analogous to the "particle-mesh Ewald" formalism as used for molecular simulations. In addition, relations that connect 3D RISM correlation functions and interaction potentials with thermodynamic quantities such as the chemical potential and average solute-solvent interaction energy are reformulated in a way that calculations of expensive real-space electrostatic terms on the 3D grid are completely avoided. These methodical enhancements allow for both, a significant speedup particularly for large solute systems and a smoother convergence of predicted thermodynamic quantities with respect to box size, as illustrated for several benchmark systems. PMID:25796231

  16. Fast vision-based catheter 3D reconstruction.

    PubMed

    Moradi Dalvand, Mohsen; Nahavandi, Saeid; Howe, Robert D

    2016-07-21

    Continuum robots offer better maneuverability and inherent compliance and are well-suited for surgical applications as catheters, where gentle interaction with the environment is desired. However, sensing their shape and tip position is a challenge as traditional sensors can not be employed in the way they are in rigid robotic manipulators. In this paper, a high speed vision-based shape sensing algorithm for real-time 3D reconstruction of continuum robots based on the views of two arbitrary positioned cameras is presented. The algorithm is based on the closed-form analytical solution of the reconstruction of quadratic curves in 3D space from two arbitrary perspective projections. High-speed image processing algorithms are developed for the segmentation and feature extraction from the images. The proposed algorithms are experimentally validated for accuracy by measuring the tip position, length and bending and orientation angles for known circular and elliptical catheter shaped tubes. Sensitivity analysis is also carried out to evaluate the robustness of the algorithm. Experimental results demonstrate good accuracy (maximum errors of  ±0.6 mm and  ±0.5 deg), performance (200 Hz), and robustness (maximum absolute error of 1.74 mm, 3.64 deg for the added noises) of the proposed high speed algorithms. PMID:27352011

  17. Fast 3D fluid registration of brain magnetic resonance images

    NASA Astrophysics Data System (ADS)

    Leporé, Natasha; Chou, Yi-Yu; Lopez, Oscar L.; Aizenstein, Howard J.; Becker, James T.; Toga, Arthur W.; Thompson, Paul M.

    2008-03-01

    Fluid registration is widely used in medical imaging to track anatomical changes, to correct image distortions, and to integrate multi-modality data. Fluid mappings guarantee that the template image deforms smoothly into the target, without tearing or folding, even when large deformations are required for accurate matching. Here we implemented an intensity-based fluid registration algorithm, accelerated by using a filter designed by Bro-Nielsen and Gramkow. We validated the algorithm on 2D and 3D geometric phantoms using the mean square difference between the final registered image and target as a measure of the accuracy of the registration. In tests on phantom images with different levels of overlap, varying amounts of Gaussian noise, and different intensity gradients, the fluid method outperformed a more commonly used elastic registration method, both in terms of accuracy and in avoiding topological errors during deformation. We also studied the effect of varying the viscosity coefficients in the viscous fluid equation, to optimize registration accuracy. Finally, we applied the fluid registration algorithm to a dataset of 2D binary corpus callosum images and 3D volumetric brain MRIs from 14 healthy individuals to assess its accuracy and robustness.

  18. Fast vision-based catheter 3D reconstruction

    NASA Astrophysics Data System (ADS)

    Moradi Dalvand, Mohsen; Nahavandi, Saeid; Howe, Robert D.

    2016-07-01

    Continuum robots offer better maneuverability and inherent compliance and are well-suited for surgical applications as catheters, where gentle interaction with the environment is desired. However, sensing their shape and tip position is a challenge as traditional sensors can not be employed in the way they are in rigid robotic manipulators. In this paper, a high speed vision-based shape sensing algorithm for real-time 3D reconstruction of continuum robots based on the views of two arbitrary positioned cameras is presented. The algorithm is based on the closed-form analytical solution of the reconstruction of quadratic curves in 3D space from two arbitrary perspective projections. High-speed image processing algorithms are developed for the segmentation and feature extraction from the images. The proposed algorithms are experimentally validated for accuracy by measuring the tip position, length and bending and orientation angles for known circular and elliptical catheter shaped tubes. Sensitivity analysis is also carried out to evaluate the robustness of the algorithm. Experimental results demonstrate good accuracy (maximum errors of  ±0.6 mm and  ±0.5 deg), performance (200 Hz), and robustness (maximum absolute error of 1.74 mm, 3.64 deg for the added noises) of the proposed high speed algorithms.

  19. Fast 3D Surface Extraction 2 pages (including abstract)

    SciTech Connect

    Sewell, Christopher Meyer; Patchett, John M.; Ahrens, James P.

    2012-06-05

    Ocean scientists searching for isosurfaces and/or thresholds of interest in high resolution 3D datasets required a tedious and time-consuming interactive exploration experience. PISTON research and development activities are enabling ocean scientists to rapidly and interactively explore isosurfaces and thresholds in their large data sets using a simple slider with real time calculation and visualization of these features. Ocean Scientists can now visualize more features in less time, helping them gain a better understanding of the high resolution data sets they work with on a daily basis. Isosurface timings (512{sup 3} grid): VTK 7.7 s, Parallel VTK (48-core) 1.3 s, PISTON OpenMP (48-core) 0.2 s, PISTON CUDA (Quadro 6000) 0.1 s.

  20. Fast collisionless reconnection and electron heating in strongly magnetized plasmas.

    PubMed

    Loureiro, N F; Schekochihin, A A; Zocco, A

    2013-07-12

    Magnetic reconnection in strongly magnetized (low-beta), weakly collisional plasmas is investigated by using a novel fluid-kinetic model [Zocco and Schekochihin, Phys. Plasmas 18, 102309 (2011)] which retains nonisothermal electron kinetics. It is shown that electron heating via Landau damping (linear phase mixing) is the dominant dissipation mechanism. In time, electron heating occurs after the peak of the reconnection rate; in space, it is concentrated along the separatrices of the magnetic island. For sufficiently large systems, the peak reconnection rate is cE(∥)(max) ≈ 0.2v(A)B(y,0), where v(A) is the Alfvén speed based on the reconnecting field B(y,0). The island saturation width is the same as in magnetohydrodynamics models except for small systems, when it becomes comparable to the kinetic scales. PMID:23889411

  1. Scanning fringe projection for fast 3D inspection

    NASA Astrophysics Data System (ADS)

    Honegger, Marc; Kahl, Michael; Trunz, Sandra; Rinner, Stefan; Ettemeyer, Andreas; Lambelet, Patrick

    2013-04-01

    In an earlier paper we have described a concept for high speed 3D inspection using fringe projection techniques. We use a special CMOS camera with 300 x 300 px which can calculate the phase on board. The focus of the first step of development had been a fringe projector, which was able to modulate the projected fringes with up to 250 kHz. In the second step the image acquisition part of the system was developed. In case of 3D measurement with a matrix camera, the camera resp. the measuring object has to be moved stepwise in the lateral direction to cover multiple acquisition areas of the measurement object. Between each image the lateral movement has to correspond to the field of view of the camera. At the intended very high image acquisition rates the high acceleration of the system between each image will lead to inacceptable mechanical forces. In order to obtain a continuous scanning procedure and at the same time to use the performance of a matrix camera, a special lens system was developed. A measurement field 120 mm long and 3 mm wide is imaged onto the camera. The width of the measuring field is imaged onto the 300 rows of the camera, giving a lateral resolution of 10 μm. In the longitudinal direction the 120 mm object length is divided into 12'000 lines to reach the same resolution of 10 μm. Due to technical reasons that will be described later only 240 of the 300 pixel rows on the chip were used. Consequently, with each camera shot 240 separated lines are imaged onto the chip. Between each of these 240 lines there is a large empty space, which is not imaged by the camera. In principle, the camera is operating as 240 single line cameras. Therefore, if the camera is shifted in an inclined direction to the camera orientation over the object, the empty spaces can be recorded as well. In an optimum alignment, the complete measuring object can be scanned in a continuous movement, covering the total length of 120 mm. In this paper we will describe this image

  2. Temporal-spatial modeling of fast-moving and deforming 3D objects

    NASA Astrophysics Data System (ADS)

    Wu, Xiaoliang; Wei, Youzhi

    1998-09-01

    This paper gives a brief description of the method and techniques developed for the modeling and reconstruction of fast moving and deforming 3D objects. A new approach using close-range digital terrestrial photogrammetry in conjunction with high speed photography and videography is proposed. A sequential image matching method (SIM) has been developed to automatically process pairs of images taken continuously of any fast moving and deforming 3D objects. Using the SIM technique a temporal-spatial model (TSM) of any fast moving and deforming 3D objects can be developed. The TSM would include a series of reconstructed surface models of the fast moving and deforming 3D object in the form of 3D images. The TSM allows the 3D objects to be visualized and analyzed in sequence. The SIM method, specifically the left-right matching and forward-back matching techniques are presented in the paper. An example is given which deals with the monitoring of a typical blast rock bench in a major open pit mine in Australia. With the SIM approach and the TSM model it is possible to automatically and efficiently reconstruct the 3D images of the blasting process. This reconstruction would otherwise be impossible to achieve using a labor intensive manual processing approach based on 2D images taken from conventional high speed cameras. The case study demonstrates the potential of the SIM approach and the TSM for the automatic identification, tracking and reconstruction of any fast moving and deforming 3D targets.

  3. Fast 3D subsurface imaging with stepped-frequency GPR

    NASA Astrophysics Data System (ADS)

    Masarik, Matthew P.; Burns, Joseph; Thelen, Brian T.; Sutter, Lena

    2015-05-01

    This paper investigates an algorithm for forming 3D images of the subsurface using stepped-frequency GPR data. The algorithm is specifically designed for a handheld GPR and therefore accounts for the irregular sampling pattern in the data and the spatially-variant air-ground interface by estimating an effective "ground-plane" and then registering the data to the plane. The algorithm efficiently solves the 4th-order polynomial for the Snell reflection points using a fully vectorized iterative scheme. The forward operator is implemented efficiently using an accelerated nonuniform FFT (Greengard and Lee, 2004); the adjoint operator is implemented efficiently using an interpolation step coupled with an upsampled FFT. The imaging is done as a linearized version of the full inverse problem, which is regularized using a sparsity constraint to reduce sidelobes and therefore improve image localization. Applying an appropriate sparsity constraint, the algorithm is able to eliminate most the surrounding clutter and sidelobes, while still rendering valuable image properties such as shape and size. The algorithm is applied to simulated data, controlled experimental data (made available by Dr. Waymond Scott, Georgia Institute of Technology), and government-provided data with irregular sampling and air-ground interface.

  4. Fast algorithm of 3D median filter for medical image despeckling

    NASA Astrophysics Data System (ADS)

    Xiong, Chengyi; Hou, Jianhua; Gao, Zhirong; He, Xiang; Chen, Shaoping

    2007-12-01

    Three-dimensional (3-D) median filtering is very useful to eliminate speckle noise from a medical imaging source, such as functional magnetic resonance imaging (fMRI) and ultrasonic imaging. 3-D median filtering is characterized by its higher computation complexity. N 3(N 3-1)/2 comparison operations would be required for 3-D median filtering with N×N×N window if the conventional bubble-sorting algorithm is adopted. In this paper, an efficient fast algorithm for 3-D median filtering was presented, which considerably reduced the computation complexity for extracting the median of a 3-D data array. Compared to the state-of-the-art, the proposed method could reduce the computation complexity of 3-D median filtering by 33%. It results in efficiently reducing the system delay of the 3-D median filter by software implementation, and the system cost and power consumption by hardware implementation.

  5. Spontaneous three-dimensional magnetic reconnection in merging toroidal plasma experiment

    SciTech Connect

    Ii, Toru; Ono, Yasushi

    2013-01-15

    We investigated a new phenomenon of three-dimensional (3D) magnetic reconnection in TS-4 torus plasma merging experiments by directly measuring the 3D structures of the current sheet. Removal of all toroidal asymmetry of the device reveals that a strong external drive of reconnection inflow increases the toroidal asymmetry of the current sheet only during the reconnection. This spontaneous 3D deformation of the current sheet increases the reconnection outflow as well as the reconnection electric field, probably because local compression of the current sheet to a thickness less than the ion gyroradius triggers its strong dissipation of the current sheet, responsible for the onset of 3D reconnection. These mechanisms indicate that the 3D reconnection is a newly observed spontaneous process of fast reconnection.

  6. Spontaneous three-dimensional magnetic reconnection in merging toroidal plasma experiment

    NASA Astrophysics Data System (ADS)

    Ii, Toru; Ono, Yasushi

    2013-01-01

    We investigated a new phenomenon of three-dimensional (3D) magnetic reconnection in TS-4 torus plasma merging experiments by directly measuring the 3D structures of the current sheet. Removal of all toroidal asymmetry of the device reveals that a strong external drive of reconnection inflow increases the toroidal asymmetry of the current sheet only during the reconnection. This spontaneous 3D deformation of the current sheet increases the reconnection outflow as well as the reconnection electric field, probably because local compression of the current sheet to a thickness less than the ion gyroradius triggers its strong dissipation of the current sheet, responsible for the onset of 3D reconnection. These mechanisms indicate that the 3D reconnection is a newly observed spontaneous process of fast reconnection.

  7. Fast Magnetic Reconnection in the Plasmoid-Dominated Regime

    SciTech Connect

    Uzdensky, D. A.; Loureiro, N. F.; Schekochihin, A. A.

    2010-12-03

    A conceptual model of resistive magnetic reconnection via a stochastic plasmoid chain is proposed. The global reconnection rate is shown to be independent of the Lundquist number. The distribution of fluxes in the plasmoids is shown to be an inverse-square law. It is argued that there is a finite probability of emergence of abnormally large plasmoids, which can disrupt the chain (and may be responsible for observable large abrupt events in solar flares and sawtooth crashes). A criterion for the transition from the resistive magnetohydrodynamic to the collisionless regime is provided.

  8. Fast magnetic reconnection in the plasmoid-dominated regime.

    PubMed

    Uzdensky, D A; Loureiro, N F; Schekochihin, A A

    2010-12-01

    A conceptual model of resistive magnetic reconnection via a stochastic plasmoid chain is proposed. The global reconnection rate is shown to be independent of the Lundquist number. The distribution of fluxes in the plasmoids is shown to be an inverse-square law. It is argued that there is a finite probability of emergence of abnormally large plasmoids, which can disrupt the chain (and may be responsible for observable large abrupt events in solar flares and sawtooth crashes). A criterion for the transition from the resistive magnetohydrodynamic to the collisionless regime is provided. PMID:21231473

  9. A fast 3D reconstruction system with a low-cost camera accessory

    PubMed Central

    Zhang, Yiwei; Gibson, Graham M.; Hay, Rebecca; Bowman, Richard W.; Padgett, Miles J.; Edgar, Matthew P.

    2015-01-01

    Photometric stereo is a three dimensional (3D) imaging technique that uses multiple 2D images, obtained from a fixed camera perspective, with different illumination directions. Compared to other 3D imaging methods such as geometry modeling and 3D-scanning, it comes with a number of advantages, such as having a simple and efficient reconstruction routine. In this work, we describe a low-cost accessory to a commercial digital single-lens reflex (DSLR) camera system allowing fast reconstruction of 3D objects using photometric stereo. The accessory consists of four white LED lights fixed to the lens of a commercial DSLR camera and a USB programmable controller board to sequentially control the illumination. 3D images are derived for different objects with varying geometric complexity and results are presented, showing a typical height error of <3 mm for a 50 mm sized object. PMID:26057407

  10. A fast 3D reconstruction system with a low-cost camera accessory

    NASA Astrophysics Data System (ADS)

    Zhang, Yiwei; Gibson, Graham M.; Hay, Rebecca; Bowman, Richard W.; Padgett, Miles J.; Edgar, Matthew P.

    2015-06-01

    Photometric stereo is a three dimensional (3D) imaging technique that uses multiple 2D images, obtained from a fixed camera perspective, with different illumination directions. Compared to other 3D imaging methods such as geometry modeling and 3D-scanning, it comes with a number of advantages, such as having a simple and efficient reconstruction routine. In this work, we describe a low-cost accessory to a commercial digital single-lens reflex (DSLR) camera system allowing fast reconstruction of 3D objects using photometric stereo. The accessory consists of four white LED lights fixed to the lens of a commercial DSLR camera and a USB programmable controller board to sequentially control the illumination. 3D images are derived for different objects with varying geometric complexity and results are presented, showing a typical height error of <3 mm for a 50 mm sized object.

  11. ON THE ROLE OF FAST MAGNETIC RECONNECTION IN ACCRETING BLACK HOLE SOURCES

    SciTech Connect

    Singh, C. B.; De Gouveia Dal Pino, E. M.; Kadowaki, L. H. S. E-mail: dalpino@iag.usp.br

    2015-01-30

    We attempt to explain the observed radio and gamma-ray emission produced in the surroundings of black holes by employing a magnetically dominated accretion flow model and fast magnetic reconnection triggered by turbulence. In earlier work, a standard disk model was used and we refine the model by focusing on the sub-Eddington regime to address the fundamental plane of black hole activity. The results do not change substantially with regard to previous work, ensuring that the details of accretion physics are not relevant in the magnetic reconnection process occurring in the corona. Rather, our work puts fast magnetic reconnection events as a powerful mechanism operating in the core region near the jet base of black hole sources on more solid ground. For microquasars and low-luminosity active galactic nuclei, the observed correlation between radio emission and the mass of the sources can be explained by this process. The corresponding gamma-ray emission also seems to be produced in the same core region. On the other hand, emission from blazars and gamma-ray bursts cannot be correlated to core emission based on fast reconnection.

  12. "Ideal" tearing and the transition to fast reconnection in the weakly collisional MHD and EMHD regimes

    NASA Astrophysics Data System (ADS)

    Del Sarto, Daniele; Pucci, Fulvia; Tenerani, Anna; Velli, Marco

    2016-03-01

    This paper discusses the transition to fast growth of the tearing instability in thin current sheets in the collisionless limit where electron inertia drives the reconnection process. It has been previously suggested that in resistive MHD there is a natural maximum aspect ratio (ratio of sheet length and breadth to thickness) which may be reached for current sheets with a macroscopic length L, the limit being provided by the fact that the tearing mode growth time becomes of the same order as the Alfvén time calculated on the macroscopic scale. For current sheets with a smaller aspect ratio than critical the normalized growth rate tends to zero with increasing Lundquist number S, while for current sheets with an aspect ratio greater than critical the growth rate diverges with S. Here we carry out a similar analysis but with electron inertia as the term violating magnetic flux conservation: previously found scalings of critical current sheet aspect ratios with the Lundquist number are generalized to include the dependence on the ratio de2/L2, where de is the electron skin depth, and it is shown that there are limiting scalings which, as in the resistive case, result in reconnecting modes growing on ideal time scales. Finite Larmor radius effects are then included, and the rescaling argument at the basis of "ideal" reconnection is proposed to explain secondary fast reconnection regimes naturally appearing in numerical simulations of current sheet evolution.

  13. Fast 3D shape measurement using Fourier transform profilometry without phase unwrapping

    NASA Astrophysics Data System (ADS)

    Song, Kechen; Hu, Shaopeng; Wen, Xin; Yan, Yunhui

    2016-09-01

    This paper presents a novel, simple, yet fast 3D shape measurement method using Fourier transform profilometry. Different from the conventional Fourier transform profilometry, this proposed method introduces the binocular stereo vision and employs two image pairs (i.e., original image pairs and fringe image pairs) to restructure 3D shape. In this proposed method, instead of phase unwrapping algorithm, a coarse disparity map is adopted as a constraint condition to realize phase matching using wrapped phase. Since the local phase matching and sub-pixel disparity refinement are proposed to obtain high measuring accuracy, high-quality phase is not required. The validity of the proposed method is verified by experiments.

  14. Fast Reconnection Rates Based on Group Velocity Cones: Whistler Regime and Pair Plasmas

    NASA Astrophysics Data System (ADS)

    Singh, N.

    2009-05-01

    Based on the group velocity vector of the whistler mode, we predict the range of whistler-regime reconnection rate depending on the half width (w) of the current sheet (CS. During the reconnection process electromagnetic perturbations (EMPs) are generated in the localized diffusion region (DR, which acts like an antenna and radiates whistler waves for certain range of CS widths. The reconnection structure (exhaust) is approximately the radiation pattern of the DR antenna and it is determined by the group velocity directions. Since the whistler waves originate from the electromagnetic perturbations (EMPs) localized in the DR, we calculate R over a range of the discrete values of the perpendicular wave number (k'') contained in the Fourier spectrum of the EMPs. We have used such calculations to determine the reconnection rates averaged over the wave number spectrum of a Gaussian shaped EMP as a function of the CS width. We find that has a fairly constant value at ˜ 0.23 for CS widths in the range 0.4 < w/di ˜ 1 and for w < 0.3di it decreases with decreasing w and it attains a value ˜ 0.06 in an extremely thin CS with w ˜ 0.05di, where di is the ion skin depth. We compare the values of and R with those found from simulations and experiments, and find them in good agreement. We also report the properties of the whistler waves radiated from the DR into the exhaust region. We also demonstrate that our theoretical method developed for whistler regime reconnection could be easily adopted to predict fast reconnection rates in pair plasmas, which support inertial Alfven waves.

  15. High Efficiency, Low Distortion 3D Diffusion Tensor Imaging with Variable Density Spiral Fast Spin Echoes (3D DW VDS RARE)

    PubMed Central

    Frank, Lawrence R.; Jung, Youngkyoo; Inati, Souheil; Tyszka, J. Michael; Wong, Eric C.

    2009-01-01

    We present an acquisition and reconstruction method designed to acquire high resolution 3D fast spin echo diffusion tensor images while mitigating the major sources of artifacts in DTI - field distortions, eddy currents and motion. The resulting images, being 3D, are of high SNR, and being fast spin echoes, exhibit greatly reduced field distortions. This sequence utilizes variable density spiral acquisition gradients, which allow for the implementation of a self-navigation scheme by which both eddy current and motion artifacts are removed. The result is that high resolution 3D DTI images are produced without the need for eddy current compensating gradients or B0 field correction. In addition, a novel method for fast and accurate reconstruction of the non-Cartesian data is employed. Results are demonstrated in the brains of normal human volunteers. PMID:19778618

  16. A fast method to measure the 3D surface of the human heart

    NASA Astrophysics Data System (ADS)

    Cao, Yiping; Su, Xianyu; Xiang, Liqun; Chen, Wenjing; Zhang, Qican

    2003-12-01

    Three-dimensional (3-D) automatic measurement of an object is widely used in many fields. In Biology and Medicine society, it can be applicable for surgery, orthopedics, viscera disease analysis and diagnosis etc. Here a new fast method to measure the 3D surface of human heart is proposed which can provide doctors a lot of information, such as the size of heart profile, the sizes of the left or right heart ventricle, and the curvature center and radius of heart ventricle, to fully analyze and diagnose pathobiology of human heart. The new fast method is optically and noncontacted and based upon the Phase Measurement Profilometry (PMP), which has higher measuring precision. A human heart specimen experiment has verified our method.

  17. Fast Probabilistic Fusion of 3d Point Clouds via Occupancy Grids for Scene Classification

    NASA Astrophysics Data System (ADS)

    Kuhn, Andreas; Huang, Hai; Drauschke, Martin; Mayer, Helmut

    2016-06-01

    High resolution consumer cameras on Unmanned Aerial Vehicles (UAVs) allow for cheap acquisition of highly detailed images, e.g., of urban regions. Via image registration by means of Structure from Motion (SfM) and Multi View Stereo (MVS) the automatic generation of huge amounts of 3D points with a relative accuracy in the centimeter range is possible. Applications such as semantic classification have a need for accurate 3D point clouds, but do not benefit from an extremely high resolution/density. In this paper, we, therefore, propose a fast fusion of high resolution 3D point clouds based on occupancy grids. The result is used for semantic classification. In contrast to state-of-the-art classification methods, we accept a certain percentage of outliers, arguing that they can be considered in the classification process when a per point belief is determined in the fusion process. To this end, we employ an octree-based fusion which allows for the derivation of outlier probabilities. The probabilities give a belief for every 3D point, which is essential for the semantic classification to consider measurement noise. For an example point cloud with half a billion 3D points (cf. Figure 1), we show that our method can reduce runtime as well as improve classification accuracy and offers high scalability for large datasets.

  18. Impulsive magnetic pulsations and electrojets in the loop footpoint driven by the fast reconnection jet

    SciTech Connect

    Ugai, M.

    2009-11-15

    It is well known that magnetic pulsations of long periods impulsively occur in accordance with the sudden onset of geomagnetic substorms and drastic enhancement of electrojets in the ionosphere. On the basis of the spontaneous fast reconnection model, the present paper examines the physical mechanism by which both magnetic pulsations and strong electrojets are impulsively driven by the fast (Alfvenic) reconnection jet. When a large-scale plasmoid [or traveling compression region (TCR)], directly caused by the fast reconnection jet, collides with the magnetic loop footpoint, strong electrojets are impulsively driven in a finite extent in the loop footpoint in accordance with the evolution of the current wedge and the generator current circuit. Simultaneously, magnetohydrodynamic (Alfven) waves, accompanied by the TCR, are reflected from the electrojet layer, leading to impulsive magnetic pulsations ahead of the loop footpoint because of the interaction (or resonance) between the reflected waves and the waves traveling toward the footpoint. The pulsations propagate outward in all directions from the source region of the wave reflection, and the pulsation periods are typically estimated to be of several tens of seconds.

  19. 3D WKB solution for fast magnetoacoustic wave behaviour around an X-line

    NASA Astrophysics Data System (ADS)

    McLaughlin, J. A.; Botha, G. J. J.; Régnier, S.; Spoors, D. L.

    2016-06-01

    Context. We study the propagation of a fast magnetoacoustic wave in a 3D magnetic field created from two magnetic dipoles. The magnetic topology contains an X-line. Aims: We aim to contribute to the overall understanding of MHD wave propagation within inhomogeneous media, specifically around X-lines. Methods: We investigate the linearised, 3D MHD equations under the assumptions of ideal and cold plasma. We utilise the WKB approximation and Charpit's method during our investigation. Results: It is found that the behaviour of the fast magnetoacoustic wave is entirely dictated by the local, inhomogeneous, equilibrium Alfvén speed profile. All parts of the wave experience refraction during propagation, where the magnitude of the refraction effect depends on the location of an individual wave element within the inhomogeneous magnetic field. The X-line, along which the Alfvén speed is identically zero, acts as a focus for the refraction effect. There are two main types of wave behaviour: part of the wave is either trapped by the X-line or escapes the system, and there exists a critical starting region around the X-line that divides these two types of behaviour. For the set-up investigated, it is found that 15.5% of the fast wave energy is trapped by the X-line. Conclusions: We conclude that linear, β = 0 fast magnetoacoustic waves can accumulate along X-lines and thus these will be specific locations of fast wave energy deposition and thus preferential heating. The work here highlights the importance of understanding the magnetic topology of a system. We also demonstrate how the 3D WKB technique described in this paper can be applied to other magnetic configurations.

  20. Fast-shock formation in line-tied magnetic reconnection models of solar flares

    NASA Technical Reports Server (NTRS)

    Forbes, T. G.

    1986-01-01

    In a previous study by the author, an approximately stationary fast shock was tentatively identified in a numerical experiment designed to study line-tied magnetic reconnection. Here the evidence for the occurrence of a stationary fast shock is reexamined, and the previous identification is confirmed. In the numerical experiment, line-tied reconnection is modeled by a configuration which produces two supermagnetosonic outflow jets - one directed upward, away from the photosphere, and one directed downward, toward an arcade of closed magnetic loops tied to the photosphere. The fast shock occurs when the downward-directed jet encounters the obstacle formed by the closed loops. Although the existence of a stationary, or nearly stationary, fast shock is confirmed, the transition from the supermagnetosonic flow region upstream of the shock to the nearly static region downstream of the shock is more complicated than was previously thought. Immediately downstream of the shock, there exists a deflection sheath in which the submagnetosonic flow coming out of the shock is diverted around the region of static closed loops. The MHD jump conditions are used to investigate the characteristics of the fast shock and to show that a stationary shock cannot exist unless accompanied by a deflection sheath. Analysis of the shock's location and dimensions suggests that such fast shocks may contribute to particle acceleration and to thermal condensation in flares.

  1. Fast extraction of minimal paths in 3D images and applications to virtual endoscopy.

    PubMed

    Deschamps, T; Cohen, L D

    2001-12-01

    The aim of this article is to build trajectories for virtual endoscopy inside 3D medical images, using the most automatic way. Usually the construction of this trajectory is left to the clinician who must define some points on the path manually using three orthogonal views. But for a complex structure such as the colon, those views give little information on the shape of the object of interest. The path construction in 3D images becomes a very tedious task and precise a priori knowledge of the structure is needed to determine a suitable trajectory. We propose a more automatic path tracking method to overcome those drawbacks: we are able to build a path, given only one or two end points and the 3D image as inputs. This work is based on previous work by Cohen and Kimmel [Int. J. Comp. Vis. 24 (1) (1997) 57] for extracting paths in 2D images using Fast Marching algorithm. Our original contribution is twofold. On the first hand, we present a general technical contribution which extends minimal paths to 3D images and gives new improvements of the approach that are relevant in 2D as well as in 3D to extract linear structures in images. It includes techniques to make the path extraction scheme faster and easier, by reducing the user interaction. We also develop a new method to extract a centered path in tubular structures. Synthetic and real medical images are used to illustrate each contribution. On the other hand, we show that our method can be efficiently applied to the problem of finding a centered path in tubular anatomical structures with minimum interactivity, and that this path can be used for virtual endoscopy. Results are shown in various anatomical regions (colon, brain vessels, arteries) with different 3D imaging protocols (CT, MR). PMID:11731307

  2. Fast 3D Spatial EPR Imaging Using Spiral Magnetic Field Gradient

    PubMed Central

    Deng, Yuanmu; Petryakov, Sergy; He, Guanglong; Kesselring, Eric; Kuppusamy, Periannan; Zweier, Jay L.

    2007-01-01

    Electron paramagnetic resonance imaging (EPRI) provides direct detection and mapping of free radicals. The continuous wave (CW) EPRI technique, in particular, has been widely used in a variety of applications in the fields of biology and medicine due to its high sensitivity and applicability to a wide range of free radicals and paramagnetic species. However, the technique requires long image acquisition periods, and this limits its use for many in vivo applications where relatively rapid changes occur in the magnitude and distribution of spins. Therefore, there has been a great need to develop fast EPRI techniques. We report the development of a fast 3D CW EPRI technique using spiral magnetic field gradient. By spiraling the magnetic field gradient and stepping the main magnetic field, this approach acquires a 3D image in one sweep of the main magnetic field, enabling significant reduction of the imaging time. A direct one-stage 3D image reconstruction algorithm, modified for reconstruction of the EPR images from the projections acquired with the spiral magnetic field gradient, was used. We demonstrated using a home-built L-band EPR system that the spiral magnetic field gradient technique enabled a 4 to 7-fold accelerated acquisition of projections. This technique has great potential for in vivo studies of free radicals and their metabolism. PMID:17267252

  3. Linear theory for fast collisionless magnetic reconnection in the lower-hybrid frequency range

    NASA Astrophysics Data System (ADS)

    Jovanović, D.; Shukla, P. K.

    2005-05-01

    A linear theory is presented for the interplay between the fast collisionless magnetic reconnection and the lower-hybrid waves that has been observed in recent computer simulations [J. F. Drake, M. Swisdak, C. Cattell et al., Science 299, 873 (2003)]. In plasma configurations with a strong guide field and anisotropic electron temperature, the electron dynamics is described within the framework of standard electron magnetohydrodynamic equations, accounting also for the effects of the electron polarization and ion motions in the presence of perpendicular electric fields. In the linear phase, we find two types of instabilities of a thin current sheet with steep edges, corresponding to its filamentation (or tearing) and bending. Using a surface-wave formalism for the perturbations whose wavelength is larger than the thickness of the current sheet, the corresponding growth rates are calculated as the contributions of singularities in the plasma dispersion function. These are governed by the electron inertia and the linear coupling of the reconnecting magnetic field with local plasma modes propagating in the perpendicular direction that are subject to the Buneman instability. The linear surface wave instability may be particularly important as a secondary instability, dissipating the thin current sheets that develop in the course of the fast reconnection in the shear-Alfvén and kinetic-Alfvén regimes, and providing the anomalous resistivity for the growth of magnetic islands beyond the shear-Alfvén and kinetic-Alfvén scales.

  4. Comparison of Parallel MRI Reconstruction Methods for Accelerated 3D Fast Spin-Echo Imaging

    PubMed Central

    Xiao, Zhikui; Hoge, W. Scott; Mulkern, R.V.; Zhao, Lei; Hu, Guangshu; Kyriakos, Walid E.

    2014-01-01

    Parallel MRI (pMRI) achieves imaging acceleration by partially substituting gradient-encoding steps with spatial information contained in the component coils of the acquisition array. Variable-density subsampling in pMRI was previously shown to yield improved two-dimensional (2D) imaging in comparison to uniform subsampling, but has yet to be used routinely in clinical practice. In an effort to reduce acquisition time for 3D fast spin-echo (3D-FSE) sequences, this work explores a specific nonuniform sampling scheme for 3D imaging, subsampling along two phase-encoding (PE) directions on a rectilinear grid. We use two reconstruction methods—2D-GRAPPA-Operator and 2D-SPACE RIP—and present a comparison between them. We show that high-quality images can be reconstructed using both techniques. To evaluate the proposed sampling method and reconstruction schemes, results via simulation, phantom study, and in vivo 3D human data are shown. We find that fewer artifacts can be seen in the 2D-SPACE RIP reconstructions than in 2D-GRAPPA-Operator reconstructions, with comparable reconstruction times. PMID:18727083

  5. Algorithms for Accurate and Fast Plotting of Contour Surfaces in 3D Using Hexahedral Elements

    NASA Astrophysics Data System (ADS)

    Singh, Chandan; Saini, Jaswinder Singh

    2016-07-01

    In the present study, Fast and accurate algorithms for the generation of contour surfaces in 3D are described using hexahedral elements which are popular in finite element analysis. The contour surfaces are described in the form of groups of boundaries of contour segments and their interior points are derived using the contour equation. The locations of contour boundaries and the interior points on contour surfaces are as accurate as the interpolation results obtained by hexahedral elements and thus there are no discrepancies between the analysis and visualization results.

  6. Algorithms for Accurate and Fast Plotting of Contour Surfaces in 3D Using Hexahedral Elements

    NASA Astrophysics Data System (ADS)

    Singh, Chandan; Saini, Jaswinder Singh

    2016-05-01

    In the present study, Fast and accurate algorithms for the generation of contour surfaces in 3D are described using hexahedral elements which are popular in finite element analysis. The contour surfaces are described in the form of groups of boundaries of contour segments and their interior points are derived using the contour equation. The locations of contour boundaries and the interior points on contour surfaces are as accurate as the interpolation results obtained by hexahedral elements and thus there are no discrepancies between the analysis and visualization results.

  7. Thermal analysis of 3D composites by a new fast multipole hybrid boundary node method

    NASA Astrophysics Data System (ADS)

    Miao, Yu; Wang, Qiao; Zhu, Hongping; Li, Yinping

    2014-01-01

    This paper applies the hybrid boundary node method (Hybrid BNM) for the thermal analysis of 3D composites. A new formulation is derived for the inclusion-based composites. In the new formulation, the unknowns of the interfaces are assembled only once in the final system equation, which can reduce nearly one half of degrees of freedom (DOFs) compared with the conventional multi-domain solver when there are lots of inclusions. A new version of the fast multipole method (FMM) is also coupled with the new formulation and the technique is applied to thermal analysis of composites with many inclusions. In the new fast multipole hybrid boundary node method (FM-HBNM), a diagonal form for translation operators is used and the method presented can be applied to the computation of more than 1,000,000 DOFs on a personal computer. Numerical examples are presented to analyze the thermal behavior of composites with many inclusions.

  8. 3D Fast Automatic Segmentation of Kidney Based on Modified AAM and Random Forest.

    PubMed

    Jin, Chao; Shi, Fei; Xiang, Dehui; Jiang, Xueqing; Zhang, Bin; Wang, Ximing; Zhu, Weifang; Gao, Enting; Chen, Xinjian

    2016-06-01

    In this paper, a fully automatic method is proposed to segment the kidney into multiple components: renal cortex, renal column, renal medulla and renal pelvis, in clinical 3D CT abdominal images. The proposed fast automatic segmentation method of kidney consists of two main parts: localization of renal cortex and segmentation of kidney components. In the localization of renal cortex phase, a method which fully combines 3D Generalized Hough Transform (GHT) and 3D Active Appearance Models (AAM) is applied to localize the renal cortex. In the segmentation of kidney components phase, a modified Random Forests (RF) method is proposed to segment the kidney into four components based on the result from localization phase. During the implementation, a multithreading technology is applied to speed up the segmentation process. The proposed method was evaluated on a clinical abdomen CT data set, including 37 contrast-enhanced volume data using leave-one-out strategy. The overall true-positive volume fraction and false-positive volume fraction were 93.15%, 0.37% for renal cortex segmentation; 83.09%, 0.97% for renal column segmentation; 81.92%, 0.55% for renal medulla segmentation; and 80.28%, 0.30% for renal pelvis segmentation, respectively. The average computational time of segmenting kidney into four components took 20 seconds. PMID:26742124

  9. Fast 3D modeling in complex environments using a single Kinect sensor

    NASA Astrophysics Data System (ADS)

    Yue, Haosong; Chen, Weihai; Wu, Xingming; Liu, Jingmeng

    2014-02-01

    Three-dimensional (3D) modeling technology has been widely used in inverse engineering, urban planning, robot navigation, and many other applications. How to build a dense model of the environment with limited processing resources is still a challenging topic. A fast 3D modeling algorithm that only uses a single Kinect sensor is proposed in this paper. For every color image captured by Kinect, corner feature extraction is carried out first. Then a spiral search strategy is utilized to select the region of interest (ROI) that contains enough feature corners. Next, the iterative closest point (ICP) method is applied to the points in the ROI to align consecutive data frames. Finally, the analysis of which areas can be walked through by human beings is presented. Comparative experiments with the well-known KinectFusion algorithm have been done and the results demonstrate that the accuracy of the proposed algorithm is the same as KinectFusion but the computing speed is nearly twice of KinectFusion. 3D modeling of two scenes of a public garden and traversable areas analysis in these regions further verified the feasibility of our algorithm.

  10. Fast and robust 3D ultrasound registration--block and game theoretic matching.

    PubMed

    Banerjee, Jyotirmoy; Klink, Camiel; Peters, Edward D; Niessen, Wiro J; Moelker, Adriaan; van Walsum, Theo

    2015-02-01

    Real-time 3D US has potential for image guidance in minimally invasive liver interventions. However, motion caused by patient breathing makes it hard to visualize a localized area, and to maintain alignment with pre-operative information. In this work we develop a fast affine registration framework to compensate in real-time for liver motion/displacement due to breathing. The affine registration of two consecutive ultrasound volumes in time is performed using block-matching. For a set of evenly distributed points in one volume and their correspondences in the other volume, we propose a robust outlier rejection method to reject false matches. The inliers are then used to determine the affine transformation. The approach is evaluated on 13 4D ultrasound sequences acquired from 8 subjects. For 91 pairs of 3D ultrasound volumes selected from these sequences, a mean registration error of 1.8mm is achieved. A graphics processing unit (GPU) implementation runs the 3D US registration at 8 Hz. PMID:25484018

  11. Plasmoid Instabilities Mediated Three-Dimensional Magnetohydrodynamic Turbulent Reconnection

    SciTech Connect

    Huang, Yi-min; Guo, Fan

    2015-07-21

    After some introductory remarks on fast reconnection in resistive MHD due to plasmoid instability, oblique tearing modes in 3D, and previous studies on 3D turbulent reconnection, the subject is presented under the following topics: 3D simulation setup, time evolution of the 3D simulation, comparison with Sweet-Parker and 2D plasmoid reconnection, and diagnostics of the turbulent state (decomposition of mean fields and fluctuations, power spectra of energy fluctuations, structure function and eddy anisotropy with respect to local magnetic field). Three primary conclusions were reached: (1) The results suggest that 3D plasmoid instabilities can lead to self-generated turbulent reconnection (evidence of energy cascade and development of inertial range, energy fluctuations preferentially align with the local magnetic field, which is one of the characteristics of MHD turbulence); (2) The turbulence is highly inhomogeneous, due to the presence of magnetic shear and outflow jets (conventional MHD turbulence theories or phenomenologies may not be applicable – e.g. scale-dependent anisotropy as predicted by Goldreich & Sridhar is not found); (3) 3D turbulent reconnection is different from 2D plasmoid-dominated reconnection in many aspects. However, in fully developed state, reconnection rates in 2D and 3D are comparable — this result needs to be further checked in higher S.

  12. Capabilities of a Global 3D MHD Model for Monitoring Extremely Fast CMEs

    NASA Astrophysics Data System (ADS)

    Wu, C. C.; Plunkett, S. P.; Liou, K.; Socker, D. G.; Wu, S. T.; Wang, Y. M.

    2015-12-01

    Since the start of the space era, spacecraft have recorded many extremely fast coronal mass ejections (CMEs) which have resulted in severe geomagnetic storms. Accurate and timely forecasting of the space weather effects of these events is important for protecting expensive space assets and astronauts and avoiding communications interruptions. Here, we will introduce a newly developed global, three-dimensional (3D) magnetohydrodynamic (MHD) model (G3DMHD). The model takes the solar magnetic field maps at 2.5 solar radii (Rs) and intepolates the solar wind plasma and field out to 18 Rs using the algorithm of Wang and Sheeley (1990, JGR). The output is used as the inner boundary condition for a 3D MHD model. The G3DMHD model is capable of simulating (i) extremely fast CME events with propagation speeds faster than 2500 km/s; and (ii) multiple CME events in sequence or simultaneously. We will demonstrate the simulation results (and comparison with in-situ observation) for the fastest CME in record on 23 July 2012, the shortest transit time in March 1976, and the well-known historic Carrington 1859 event.

  13. FAST MAGNETIC RECONNECTION IN THE SOLAR CHROMOSPHERE MEDIATED BY THE PLASMOID INSTABILITY

    SciTech Connect

    Ni, Lei; Kliem, Bernhard; Lin, Jun; Wu, Ning

    2015-01-20

    Magnetic reconnection in the partially ionized solar chromosphere is studied in 2.5 dimensional magnetohydrodynamic simulations including radiative cooling and ambipolar diffusion. A Harris current sheet with and without a guide field is considered. Characteristic values of the parameters in the middle chromosphere imply a high magnetic Reynolds number of ∼10{sup 6}-10{sup 7} in the present simulations. Fast magnetic reconnection then develops as a consequence of the plasmoid instability without the need to invoke anomalous resistivity enhancements. Multiple levels of the instability are followed as it cascades to smaller scales, which approach the ion inertial length. The reconnection rate, normalized to the asymptotic values of magnetic field and Alfvén velocity in the inflow region, reaches values in the range ∼0.01-0.03 throughout the cascading plasmoid formation and for zero as well as for strong guide field. The outflow velocity reaches ≈40 km s{sup –1}. Slow-mode shocks extend from the X-points, heating the plasmoids up to ∼8 × 10{sup 4} K. In the case of zero guide field, the inclusion of both ambipolar diffusion and radiative cooling causes a rapid thinning of the current sheet (down to ∼30 m) and early formation of secondary islands. Both of these processes have very little effect on the plasmoid instability for a strong guide field. The reconnection rates, temperature enhancements, and upward outflow velocities from the vertical current sheet correspond well to their characteristic values in chromospheric jets.

  14. XuvTools: free, fast and reliable stitching of large 3D datasets.

    PubMed

    Emmenlauer, M; Ronneberger, O; Ponti, A; Schwarb, P; Griffa, A; Filippi, A; Nitschke, R; Driever, W; Burkhardt, H

    2009-01-01

    Current biomedical research increasingly requires imaging large and thick 3D structures at high resolution. Prominent examples are the tracking of fine filaments over long distances in brain slices, or the localization of gene expression or cell migration in whole animals like Caenorhabditis elegans or zebrafish. To obtain both high resolution and a large field of view (FOV), a combination of multiple recordings ('tiles') is one of the options. Although hardware solutions exist for fast and reproducible acquisition of multiple 3D tiles, generic software solutions are missing to assemble ('stitch') these tiles quickly and accurately. In this paper, we present a framework that achieves fully automated recombination of tiles recorded at arbitrary positions in 3D space, as long as some small overlap between tiles is provided. A fully automated 3D correlation between all tiles is achieved such that no manual interaction or prior knowledge about tile positions is needed. We use (1) phase-only correlation in a multi-scale approach to estimate the coarse positions, (2) normalized cross-correlation of small patches extracted at salient points to obtain the precise matches, (3) find the globally optimal placement for all tiles by a singular value decomposition and (4) accomplish a nearly seamless stitching by a bleaching correction at the tile borders. If the dataset contains multiple channels, all channels are used to obtain the best matches between tiles. For speedup we employ a heuristic method to prune unneeded correlations, and compute all correlations via the fast Fourier transform (FFT), thereby achieving very good runtime performance. We demonstrate the successful application of the proposed framework to a wide range of different datasets from whole zebrafish embryos and C. elegans, mouse and rat brain slices and fine plant hairs (trichome). Further, we compare our stitching results to those of other commercially and freely available software solutions. The

  15. Fast similarity search for protein 3D structures using topological pattern matching based on spatial relations.

    PubMed

    Park, Sung-Hee; Ryu, Keun Ho; Gilbert, David

    2005-08-01

    Similarity search for protein 3D structures become complex and computationally expensive due to the fact that the size of protein structure databases continues to grow tremendously. Recently, fast structural similarity search systems have been required to put them into practical use in protein structure classification whilst existing comparison systems do not provide comparison results on time. Our approach uses multi-step processing that composes of a preprocessing step to represent geometry of protein structures with spatial objects, a filter step to generate a small candidate set using approximate topological string matching, and a refinement step to compute a structural alignment. This paper describes the preprocessing and filtering for fast similarity search using the discovery of topological patterns of secondary structure elements based on spatial relations. Our system is fully implemented by using Oracle 8i spatial. We have previously shown that our approach has the advantage of speed of performance compared with other approach such as DALI. This work shows that the discovery of topological relations of secondary structure elements in protein structures by using spatial relations of spatial databases is practical for fast structural similarity search for proteins. PMID:16187404

  16. Fast 3D visualization of endogenous brain signals with high-sensitivity laser scanning photothermal microscopy.

    PubMed

    Miyazaki, Jun; Iida, Tadatsune; Tanaka, Shinji; Hayashi-Takagi, Akiko; Kasai, Haruo; Okabe, Shigeo; Kobayashi, Takayoshi

    2016-05-01

    A fast, high-sensitivity photothermal microscope was developed by implementing a spatially segmented balanced detection scheme into a laser scanning microscope. We confirmed a 4.9 times improvement in signal-to-noise ratio in the spatially segmented balanced detection compared with that of conventional detection. The system demonstrated simultaneous bi-modal photothermal and confocal fluorescence imaging of transgenic mouse brain tissue with a pixel dwell time of 20 μs. The fluorescence image visualized neurons expressing yellow fluorescence proteins, while the photothermal signal detected endogenous chromophores in the mouse brain, allowing 3D visualization of the distribution of various features such as blood cells and fine structures probably due to lipids. This imaging modality was constructed using compact and cost-effective laser diodes, and will thus be widely useful in the life and medical sciences. PMID:27231615

  17. Fast-response switchable lens for 3D and wearable displays.

    PubMed

    Lee, Yun-Han; Peng, Fenglin; Wu, Shin-Tson

    2016-01-25

    We report a switchable lens in which a twisted nematic (TN) liquid crystal cell is utilized to control the input polarization. Different polarization state leads to different path length in the proposed optical system, which in turn results in different focal length. This type of switchable lens has advantages in fast response time, low operation voltage, and inherently lower chromatic aberration. Using a pixelated TN panel, we can create depth information to the selected pixels and thus add depth information to a 2D image. By cascading three such device structures together, we can generate 8 different focuses for 3D displays, wearable virtual/augmented reality, and other head mounted display devices. PMID:26832545

  18. Fast phase-added stereogram algorithm for generation of photorealistic 3D content.

    PubMed

    Kang, Hoonjong; Stoykova, Elena; Yoshikawa, Hiroshi

    2016-01-20

    A new phase-added stereogram algorithm for accelerated computation of holograms from a point cloud model is proposed. The algorithm relies on the hologram segmentation, sampling of directional information, and usage of the fast Fourier transform with a finer grid in the spatial frequency domain than is provided by the segment size. The algorithm gives improved quality of reconstruction due to new phase compensation introduced in the segment fringe patterns. The result is finer beam steering leading to high peak intensity and a large peak signal-to-noise ratio in reconstruction. The feasibility of the algorithm is checked by the generation of 3D contents for a color wavefront printer. PMID:26835945

  19. Fast 3D visualization of endogenous brain signals with high-sensitivity laser scanning photothermal microscopy

    PubMed Central

    Miyazaki, Jun; Iida, Tadatsune; Tanaka, Shinji; Hayashi-Takagi, Akiko; Kasai, Haruo; Okabe, Shigeo; Kobayashi, Takayoshi

    2016-01-01

    A fast, high-sensitivity photothermal microscope was developed by implementing a spatially segmented balanced detection scheme into a laser scanning microscope. We confirmed a 4.9 times improvement in signal-to-noise ratio in the spatially segmented balanced detection compared with that of conventional detection. The system demonstrated simultaneous bi-modal photothermal and confocal fluorescence imaging of transgenic mouse brain tissue with a pixel dwell time of 20 μs. The fluorescence image visualized neurons expressing yellow fluorescence proteins, while the photothermal signal detected endogenous chromophores in the mouse brain, allowing 3D visualization of the distribution of various features such as blood cells and fine structures probably due to lipids. This imaging modality was constructed using compact and cost-effective laser diodes, and will thus be widely useful in the life and medical sciences. PMID:27231615

  20. Multilevel fast multipole method based on a potential formulation for 3D electromagnetic scattering problems.

    PubMed

    Fall, Mandiaye; Boutami, Salim; Glière, Alain; Stout, Brian; Hazart, Jerome

    2013-06-01

    A combination of the multilevel fast multipole method (MLFMM) and boundary element method (BEM) can solve large scale photonics problems of arbitrary geometry. Here, MLFMM-BEM algorithm based on a scalar and vector potential formulation, instead of the more conventional electric and magnetic field formulations, is described. The method can deal with multiple lossy or lossless dielectric objects of arbitrary geometry, be they nested, in contact, or dispersed. Several examples are used to demonstrate that this method is able to efficiently handle 3D photonic scatterers involving large numbers of unknowns. Absorption, scattering, and extinction efficiencies of gold nanoparticle spheres, calculated by the MLFMM, are compared with Mie's theory. MLFMM calculations of the bistatic radar cross section (RCS) of a gold sphere near the plasmon resonance and of a silica coated gold sphere are also compared with Mie theory predictions. Finally, the bistatic RCS of a nanoparticle gold-silver heterodimer calculated with MLFMM is compared with unmodified BEM calculations. PMID:24323115

  1. ALE3D Simulation of Heating and Violence in a Fast Cookoff Experiment with LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; Nichols, A L; deHaven, M R; Strand, O T

    2006-06-26

    We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.

  2. ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment with LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R

    2006-11-22

    We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.

  3. Fast 3D reconstruction of tool wear based on monocular vision and multi-color structured light illuminator

    NASA Astrophysics Data System (ADS)

    Wang, Zhongren; Li, Bo; Zhou, Yuebin

    2014-11-01

    Fast 3D reconstruction of tool wear from 2D images has great importance to 3D measuring and objective evaluating tool wear condition, determining accurate tool change and insuring machined part's quality. Extracting 3D information of tool wear zone based on monocular multi-color structured light can realize fast recovery of surface topography of tool wear, which overcomes the problems of traditional methods such as solution diversity and slow convergence when using SFS method and stereo match when using 3D reconstruction from multiple images. In this paper, a kind of new multi-color structured light illuminator was put forward. An information mapping model was established among illuminator's structure parameters, surface morphology and color images. The mathematical model to reconstruct 3D morphology based on monocular multi-color structured light was presented. Experimental results show that this method is effective and efficient to reconstruct the surface morphology of tool wear zone.

  4. ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment for LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R

    2006-05-23

    Fast cookoff is of interest in the areas of fire hazard reduction and the development of directed energy systems for defense. During a fast cookoff (thermal explosion), high heat fluxes cause rapid temperature increases and ignition in thin boundary layers. We are developing ALE3D models to describe the thermal, chemical, and mechanical behavior during the heating, ignition, and explosive phases. The candidate models and numerical strategies are being evaluated using benchmark cookoff experiments. Fast cookoff measurements were made in a Scaled-Thermal-Explosion-eXperiment (STEX) for LX-10 (94.7% HMX, 5.3% Viton A) confined in a 4130 steel tube with reinforced end caps. Gaps were present at the side and top of the explosive charge to allow for thermal expansion. The explosive was heated until explosion using radiant heaters. Temperatures were measured using thermocouples positioned on the tube wall and in the explosive. During the explosion, the tube expansion and fragment velocities were measured with strain gauges, Photonic-Doppler-Velocimeters (PDVs), and micropower radar units. A fragment size distribution was constructed from fragments captured in Lexan panels. ALE3D models for chemical, thermal, and mechanical behavior were developed for the heating and explosive processes. A multi-step chemical kinetics model is employed for the HMX while a one-step model is used for the Viton. A pressure-dependent deflagration model is employed during the expansion. A Steinberg-Guinan model represents the mechanical behavior of the solid constituents while polynomial and gamma-law expressions are used for the equation of state of the solid and gas species, respectively. Parameters for the kinetics model were specified using measurements of the One-Dimensional-Time-to-Explosion (ODTX), while measurements for burn rate were employed to determine parameters in the burn front model. The simulations include radiative and conductive transport across the dynamic gaps between the

  5. Fast 3D Net Expeditions: Tools for Effective Scientific Collaboration on the World Wide Web

    NASA Technical Reports Server (NTRS)

    Watson, Val; Chancellor, Marisa K. (Technical Monitor)

    1996-01-01

    Two new technologies, the FASTexpedition and Remote FAST, have been developed that provide remote, 3D (three dimensional), high resolution, dynamic, interactive viewing of scientific data. The FASTexpedition permits one to access scientific data from the World Wide Web, take guided expeditions through the data, and continue with self controlled expeditions through the data. Remote FAST permits collaborators at remote sites to simultaneously view an analysis of scientific data being controlled by one of the collaborators. Control can be transferred between sites. These technologies are now being used for remote collaboration in joint university, industry, and NASA projects. Also, NASA Ames Research Center has initiated a project to make scientific data and guided expeditions through the data available as FASTexpeditions on the World Wide Web for educational purposes. Previously, remote visualization of dynamic data was done using video format (transmitting pixel information) such as video conferencing or MPEG (Motion Picture Expert Group) movies on the Internet. The concept for this new technology is to send the raw data (e.g., grids, vectors, and scalars) along with viewing scripts over the Internet and have the pixels generated by a visualization tool running on the viewers local workstation. The visualization tool that is currently used is FAST (Flow Analysis Software Toolkit). The advantages of this new technology over using video format are: (1) The visual is much higher in resolution (1280x1024 pixels with 24 bits of color) than typical video format transmitted over the network. (2) The form of the visualization can be controlled interactively (because the viewer is interactively controlling the visualization tool running on his workstation). (3) A rich variety of guided expeditions through the data can be included easily. (4) A capability is provided for other sites to see a visual analysis of one site as the analysis is interactively performed. Control of

  6. 3-D Ground Displacement Monitoring of very fast-moving Landslides in Emergency Scenario

    NASA Astrophysics Data System (ADS)

    Casu, Francesco; Manconi, Andrea; Bonano, Manuela; De Luca, Claudio; Elefante, Stefano

    2014-05-01

    On December 3rd, 2013, a large and fast-moving landslide phenomena, which occurred in South-West of Montescaglioso town (southern Italy) after some days of intense raining, caused ground displacements on the order of several meters. The mass wasting involved an important freeway connection disrupting more than 500 meters of the route and some isolated buildings. In this work we present a case study of application of SAR remote sensing techniques for retrieving ground displacement field in a landslide emergency scenario. To this aim, thanks to the availability of ascending and descending COSMO-SkyMed (CSK) satellite acquisitions, we first applied the DInSAR technique (Massonnet et al., 1993) to both datasets, for generating differential interferograms across the investigated event. In particular, two data pairs (one ascending and one descending) involving pre- and post-event epochs and approximately spanning the same time interval were identified. Unfortunately, the DInSAR analysis produced unsatisfactory results, because of the excessive phase noise within the area of interest, mainly related to the fast-moving deformation pattern (several meters) and also to the presence of vegetation. To overcome the above mentioned limitations, the amplitude-based Pixel Offset (PO) technique (Fialko and Simons, 2001) was applied to the previous identified CSK data pairs. In this case, the PO technique allowed us to retrieve the projection of the surface displacements across and along the satellite's track (range and azimuth, respectively) for both the ascending and descending orbits. Then, by properly combining these 2-D maps of the measured surface movements, we also retrieved the 3-D ground deformation pattern, i.e. the North, East and Vertical displacement components. The ground displacements have a main SSE component, with values exceeding 10 meters. Moreover, large subsidence values were identified in those areas experiencing the largest damages, as well as a clear uplift

  7. Extreme ultra-violet burst, particle heating, and whistler wave emission in fast magnetic reconnection induced by kink-driven Rayleigh-Taylor instability

    NASA Astrophysics Data System (ADS)

    Chai, Kil-Byoung; Zhai, Xiang; Bellan, Paul M.

    2016-03-01

    A spatially localized energetic extreme ultra-violet (EUV) burst is imaged at the presumed position of fast magnetic reconnection in a plasma jet produced by a coaxial helicity injection source; this EUV burst indicates strong localized electron heating. A circularly polarized high frequency magnetic field perturbation is simultaneously observed at some distance from the reconnection region indicating that the reconnection emits whistler waves and that Hall dynamics likely governs the reconnection. Spectroscopic measurement shows simultaneous fast ion heating. The electron heating is consistent with Ohmic dissipation, while the ion heating is consistent with ion trajectories becoming stochastic.

  8. Does the resistive tearing instability nonlinearly evolve to a fast reconnection mode

    NASA Technical Reports Server (NTRS)

    Steinolfson, R. S.

    1988-01-01

    A fundamental problem in applying linear tearing instability theory to the rapid processes (particle acceleration, heating) in flares was the characteristically slow rate of reconnection. This problem can be at least partially overcome if the tearin mode nonlinearly evolves to a regime in which the reconnection rate is substantially enhanced, such as that for the Petschek configuration. This possibility was often suggested, and some numerical simulations appear to provide support for such a view. Numerical simulation are used to study the nonlinear evolution of the tearing stability and show that a fast Petschek-like regime may not be achieved. This conclusion follows when there are sufficient grid points within the diffusion region to completely resolve the nonlinear dynamic interactions in the diffusion layer. When the numerical resolution is not adequate, the solution does appear to approach a Petschek configuration. The resolved solution contains reverse flow vortices and current sheets, terminated with a current reversal, similar to those obtained by Syrovatsky (JEPT, 33, 933, 1971).

  9. Fast 3D inversion of airborne gravity-gradiometry data using Lanczos bidiagonalization method

    NASA Astrophysics Data System (ADS)

    Meng, Zhaohai; Li, Fengting; Zhang, Dailei; Xu, Xuechun; Huang, Danian

    2016-09-01

    We developed a new fast inversion method for to process and interpret airborne gravity gradiometry data, which was based on Lanczos bidiagonalization algorithm. Here, we describe the application of this new 3D gravity gradiometry inversion method to recover a subsurface density distribution model from the airborne measured gravity gradiometry anomalies. For this purpose, the survey area is divided into a large number of rectangular cells with each cell possessing a constant unknown density. It is well known that the solution of large linear gravity gradiometry is an ill-posed problem since using the smoothest inversion method is considerably time consuming. We demonstrate that the Lanczos bidiagonalization method can be an appropriate algorithm to solve a Tikhonov solver time cost function for resolving the large equations within a short time. Lanczos bidiagonalization is designed to make the very large gravity gradiometry forward modeling matrices to become low-rank, which will considerably reduce the running time of the inversion method. We also use a weighted generalized cross validation method to choose the appropriate Tikhonov parameter to improve inversion results. The inversion incorporates a model norm that allows us to attain the smoothing and depth of the solution; in addition, the model norm counteracts the natural decay of the kernels, which concentrate at shallow depths. The method is applied on noise-contaminated synthetic gravity gradiometry data to demonstrate its suitability for large 3D gravity gradiometry data inversion. The airborne gravity gradiometry data from the Vinton Salt Dome, USE, were considered as a case study. The validity of the new method on real data is discussed with reference to the Vinton Dome inversion result. The intermediate density values in the constructed model coincide well with previous results and geological information. This demonstrates the validity of the gravity gradiometry inversion method.

  10. Explosive turbulent magnetic reconnection.

    PubMed

    Higashimori, K; Yokoi, N; Hoshino, M

    2013-06-21

    We report simulation results for turbulent magnetic reconnection obtained using a newly developed Reynolds-averaged magnetohydrodynamics model. We find that the initial Harris current sheet develops in three ways, depending on the strength of turbulence: laminar reconnection, turbulent reconnection, and turbulent diffusion. The turbulent reconnection explosively converts the magnetic field energy into both kinetic and thermal energy of plasmas, and generates open fast reconnection jets. This fast turbulent reconnection is achieved by the localization of turbulent diffusion. Additionally, localized structure forms through the interaction of the mean field and turbulence. PMID:23829741

  11. Numerical 3D models support two distinct hydrothermal circulation systems at fast spreading ridges

    NASA Astrophysics Data System (ADS)

    Hasenclever, Jörg; Theissen-Krah, Sonja; Rüpke, Lars

    2013-04-01

    We present 3D numerical calculations of hydrothermal fluid flow at fast spreading ridges. The setup of the 3D models is based our previous 2D studies, in which we have coupled numerical models for crustal accretion and hydrothermal fluid flow. One result of these calculations is a crustal permeability field that leads to a thermal structure in the crust that matches seismic tomography data of the East Pacific Rise (EPR). The 1000°C isotherm obtained from the 2D results is now used as the lower boundary of the 3D model domain, while the upper boundary is a smoothed bathymetry of the EPR. The same permeability field as in the 2D models is used, with the highest permeability at the ridge axis and a decrease with both depth and distance to the ridge. Permeability is also reduced linearly between 600 and 1000°C. Using a newly developed parallel finite element code written in Matlab that solves for thermal evolution, fluid pressure and Darcy flow, we simulate the flow patterns of hydrothermal circulation in a segment of 5000m along-axis, 10000m across-axis and up to 5000m depth. We observe two distinct hydrothermal circulation systems: An on-axis system forming a series of vents with a spacing ranging from 100 to 500m that is recharged by nearby (100-200m) downflows on both sides of the ridge axis. Simultaneously a second system with much broader extensions both laterally and vertically exists off-axis. It is recharged by fluids intruding between 1500m to 5000m off-axis and sampling both upper and lower crust. These fluids are channeled in the deepest and hottest regions with high permeability and migrate up-slope following the 600°C isotherm until reaching the edge of the melt lens. Depending on the width of the melt lens these off-axis fluids either merge with the on-axis hydrothermal system or form separate vents. We observe separate off-axis vent fields if the magma lens half-width exceeds 1000m and confluence of both systems for half-widths smaller than 500m. For

  12. Fast Semantic Segmentation of 3d Point Clouds with Strongly Varying Density

    NASA Astrophysics Data System (ADS)

    Hackel, Timo; Wegner, Jan D.; Schindler, Konrad

    2016-06-01

    We describe an effective and efficient method for point-wise semantic classification of 3D point clouds. The method can handle unstructured and inhomogeneous point clouds such as those derived from static terrestrial LiDAR or photogammetric reconstruction; and it is computationally efficient, making it possible to process point clouds with many millions of points in a matter of minutes. The key issue, both to cope with strong variations in point density and to bring down computation time, turns out to be careful handling of neighborhood relations. By choosing appropriate definitions of a point's (multi-scale) neighborhood, we obtain a feature set that is both expressive and fast to compute. We evaluate our classification method both on benchmark data from a mobile mapping platform and on a variety of large, terrestrial laser scans with greatly varying point density. The proposed feature set outperforms the state of the art with respect to per-point classification accuracy, while at the same time being much faster to compute.

  13. Impulsively Fast Magnetic Reconnection in Solar Flares and Coronal Mass Ejections and in Laboratory Plasma Merging Experiments

    NASA Astrophysics Data System (ADS)

    Cheng, Chio Z.; Ono, Yasushi; Yang, Ya-Hui; Choe, Gwangson

    2012-10-01

    Impulsively fast magnetic reconnection has been shown to be the major mechanism responsible for explosive flare non-thermal energy release and acceleration of coronal mass ejection (CME) motion. It has been observed that for most large solar flares non-thermal emissions in hard X-rays (HXR) and millimeter/submillimeter waves impulsively rise and decade during the soft X-ray (SXR) emission rise phase. Moreover, the filament/CME upward motion is accelerated temporally in correlation with the impulsive enhancement of flare non-thermal emission and reconnection electric field in the current sheet in both simulations and observations. The peak reconnection electric field during flare impulsive phase is on the order of a few kV/m for X-class flares. Here, we demonstrated for the first time in laboratory plasma merging experiments the correlation of the magnetic reconnection rate with the acceleration of plasmoid ejected from the current sheet using the TS-4 device of the Tokyo University. Moreover, we have also found that the electron heating occurs in the current sheet and the ion heating occurs in the down-stream outflow region. Thus, we conclude that the plasmoid/CME acceleration is a key mechanism for the impulsive enhancement of magnetic reconnection rate (electric field).

  14. Ultra-fast hybrid CPU-GPU multiple scatter simulation for 3-D PET.

    PubMed

    Kim, Kyung Sang; Son, Young Don; Cho, Zang Hee; Ra, Jong Beom; Ye, Jong Chul

    2014-01-01

    Scatter correction is very important in 3-D PET reconstruction due to a large scatter contribution in measurements. Currently, one of the most popular methods is the so-called single scatter simulation (SSS), which considers single Compton scattering contributions from many randomly distributed scatter points. The SSS enables a fast calculation of scattering with a relatively high accuracy; however, the accuracy of SSS is dependent on the accuracy of tail fitting to find a correct scaling factor, which is often difficult in low photon count measurements. To overcome this drawback as well as to improve accuracy of scatter estimation by incorporating multiple scattering contribution, we propose a multiple scatter simulation (MSS) based on a simplified Monte Carlo (MC) simulation that considers photon migration and interactions due to photoelectric absorption and Compton scattering. Unlike the SSS, the MSS calculates a scaling factor by comparing simulated prompt data with the measured data in the whole volume, which enables a more robust estimation of a scaling factor. Even though the proposed MSS is based on MC, a significant acceleration of the computational time is possible by using a virtual detector array with a larger pitch by exploiting that the scatter distribution varies slowly in spatial domain. Furthermore, our MSS implementation is nicely fit to a parallel implementation using graphic processor unit (GPU). In particular, we exploit a hybrid CPU-GPU technique using the open multiprocessing and the compute unified device architecture, which results in 128.3 times faster than using a single CPU. Overall, the computational time of MSS is 9.4 s for a high-resolution research tomograph (HRRT) system. The performance of the proposed MSS is validated through actual experiments using an HRRT. PMID:24403412

  15. Fast magnetic reconnection in thin current sheets: effects of different current profiles and electron inertia in Ohm's law.

    NASA Astrophysics Data System (ADS)

    Pucci, Fulvia; Del Sarto, Daniele; Tenerani, Anna; Velli, Marco

    2015-04-01

    By examining sheets with thicknesses scaling as different powers of the Lundquist number S, we previously showed (Pucci and Velli, 2014) that the growth rate of the tearing mode increases as current sheets thin and, once the inverse aspect ratio reaches a scaling a/L = S-1/3, the time-scale for the instability to develop becomes of the order of the Alfvén time. That means that a fast instability sets in well before Sweet-Parker type current sheets can form. In addition, such an instability produces many islands in the sheet, leading to fast nonlinear evolution and most probably a turbulent disruption of the sheet itself. This has fundamental implications for magnetically driven reconnection throughout the corona, and in particular for coronal heating and the triggering of coronal mass ejections. Here we extend the study of reconnection instabilities to magnetic fields of grater complexity, displaying different current structures such as, for example, multiple or asymmetric current layers. We also consider the possibility of a Δ' dependence on wave-number k-p for different values of p, studying analogies and variations of the trigger scaling relation a/L ~ S-1/3 with respect to the Harris current sheet equilibrium. At large Lundquist numbers in typical Heliospheric plasmas kinetic effects become more important in Ohm's law: we consider the effects of electron skin depth reconnection, showing that we can define a trigger relation similar to the resistive case. The results are important to the transition to fast reconnection in the solar corona, solar wind, magnetosphere as well as laboratory plasmas. F. Pucci and M. Velli, "Reconnection of quasi-singular current sheets: the 'ideal" tearing mode" ApJ 780:L19, 2014.

  16. Fast Susceptibility-Weighted Imaging (SWI) with 3D Short-Axis Propeller (SAP)-EPI

    PubMed Central

    Holdsworth, Samantha J.; Yeom, Kristen W.; Moseley, Michael E.; Skare, S.

    2014-01-01

    Purpose Susceptibility-Weighted Imaging (SWI) in neuroimaging can be challenging due to long scan times of 3D Gradient Recalled Echo (GRE), while faster techniques such as 3D interleaved EPI (iEPI) are prone to motion artifacts. Here we outline and implement a 3D Short-Axis Propeller Echo-Planar Imaging (SAP-EPI) trajectory as a faster, motion-correctable approach for SWI. Methods Experiments were conducted on a 3T MRI system. 3D SAP-EPI, 3D iEPI, and 3D GRE SWI scans were acquired on two volunteers. Controlled motion experiments were conducted to test the motion-correction capability of 3D SAP-EPI. 3D SAP-EPI SWI data were acquired on two pediatric patients as a potential alternative to 2D GRE used clinically. Results 3D GRE images had a better target resolution (0.47 × 0.94 × 2mm, scan time = 5min), iEPI and SAP-EPI images (resolution = 0.94 × 0.94 × 2mm) were acquired in a faster scan time (1:52min) with twice the brain coverage. SAP-EPI showed motion-correction capability and some immunity to undersampling from rejected data. Conclusion While 3D SAP-EPI suffers from some geometric distortion, its short scan time and motion-correction capability suggest that SAP-EPI may be a useful alternative to GRE and iEPI for use in SWI, particularly in uncooperative patients. PMID:24956237

  17. Dynamic Response of Magnetic Reconnection Due to Current Sheet Variability

    NASA Astrophysics Data System (ADS)

    George, D. E.; Jahn, J. M.; Burch, J. L.; Hesse, M.; Pollock, C. J.

    2014-12-01

    Magnetic reconnection is a process which regulates the interaction between regions of magnetized plasma. While many factors have an impact on the evolution of this process, there still remains a lack of understanding of the key behaviors involved in the triggering of fast reconnection. Despite an abundance of in-situ measurements, indicating the high degree of variability in the thickness, density and composition along the current sheet, no simulation studies exist which account for such current sheet variations. 2D and 3D simulations have a periodic boundary in the dimension along the current sheet and so tend to neglect these variations in the current sheet originating external to the modeled reconnection region. Here we focus on the effects on reconnection due to the variability in the thickness and density of the current sheet. Using 2.5D kinetic simulations of 2-species plasma, we isolate and explore the dynamic effects on reconnection associated with variations in the current sheet originating externally to the reconnection region. While periodic boundary conditions are still used, in the direction along the current sheet, a step-change perturbation in thickness or density of the current sheet is introduced once a stable reconnection rate is reached. The dynamic response of the overall system, after introducing the perturbation, is then evaluated, with a focus on the reconnection rate. When the reconnection rate is slowed significantly over time, loading of the inflow region occurs (a build-up of plasma and magnetic energy/pressure. This state is indicated by an asymptotic behavior in the reconnection rate over time. If a sudden variation in the current sheet is introduced under these conditions, a resultant triggering of fast reconnection may occur, which could lead to an episode of fast reconnection, saw-tooth-crash condition or even act as a trigger for sub-storms.

  18. Fast and Precise 3D Fluorophore Localization based on Gradient Fitting

    NASA Astrophysics Data System (ADS)

    Ma, Hongqiang; Xu, Jianquan; Jin, Jingyi; Gao, Ying; Lan, Li; Liu, Yang

    2015-09-01

    Astigmatism imaging approach has been widely used to encode the fluorophore’s 3D position in single-particle tracking and super-resolution localization microscopy. Here, we present a new high-speed localization algorithm based on gradient fitting to precisely decode the 3D subpixel position of the fluorophore. This algebraic algorithm determines the center of the fluorescent emitter by finding the position with the best-fit gradient direction distribution to the measured point spread function (PSF), and can retrieve the 3D subpixel position of the fluorophore in a single iteration. Through numerical simulation and experiments with mammalian cells, we demonstrate that our algorithm yields comparable localization precision to the traditional iterative Gaussian function fitting (GF) based method, while exhibits over two orders-of-magnitude faster execution speed. Our algorithm is a promising high-speed analyzing method for 3D particle tracking and super-resolution localization microscopy.

  19. Fast and Precise 3D Fluorophore Localization based on Gradient Fitting

    PubMed Central

    Ma, Hongqiang; Xu, Jianquan; Jin, Jingyi; Gao, Ying; Lan, Li; Liu, Yang

    2015-01-01

    Astigmatism imaging approach has been widely used to encode the fluorophore’s 3D position in single-particle tracking and super-resolution localization microscopy. Here, we present a new high-speed localization algorithm based on gradient fitting to precisely decode the 3D subpixel position of the fluorophore. This algebraic algorithm determines the center of the fluorescent emitter by finding the position with the best-fit gradient direction distribution to the measured point spread function (PSF), and can retrieve the 3D subpixel position of the fluorophore in a single iteration. Through numerical simulation and experiments with mammalian cells, we demonstrate that our algorithm yields comparable localization precision to the traditional iterative Gaussian function fitting (GF) based method, while exhibits over two orders-of-magnitude faster execution speed. Our algorithm is a promising high-speed analyzing method for 3D particle tracking and super-resolution localization microscopy. PMID:26390959

  20. Self-generated Turbulence in Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Oishi, Jeffrey S.; Mac Low, Mordecai-Mark; Collins, David C.; Tamura, Moeko

    2015-06-01

    Classical Sweet-Parker models of reconnection predict that reconnection rates depend inversely on the resistivity, usually parameterized using the dimensionless Lundquist number (S). We describe magnetohydrodynamic (MHD) simulations using a static, nested grid that show the development of a three-dimensional (3D) instability in the plane of a current sheet between reversing field lines without a guide field. The instability leads to rapid reconnection of magnetic field lines at a rate independent of S over at least the range 3.2× {{10}3}≲ S≲ 3.2× {{10}5} resolved by the simulations. We find that this instability occurs even for cases with S≲ {{10}4} that in our models appear stable to the recently described, two-dimensional, plasmoid instability. Our results suggest that 3D, MHD processes alone produce fast (resistivity independent) reconnection without recourse to kinetic effects or external turbulence. The unstable reconnection layers provide a self-consistent environment in which the extensively studied turbulent reconnection process can occur.

  1. Three-Dimensional Localized Magnetic Reconnection in Torus Plasma Merging Device TS-4

    NASA Astrophysics Data System (ADS)

    Ii, Toru; Hayashi, Yoshinori; Inomoto, Michiaki; Ono, Yasushi

    Three-dimensional (3-D) localized magnetic reconnection was studied experimentally using torus plasma merging device TS-4. The direct measurements of 3-D structures of current sheet revealed two unsteady and fast reconnection mechanisms: 3-D deformation of current sheet and mass ejection. When strong compression force IAcc∼60kA was applied to two plasma toroids with low guide field Bt/B¦¦∼1, toroidal modes n=1-3 of current sheet were observed to grow only during their reconnection and to disappear after the reconnection. This 3-D deformation promoted mass ejection from the current sheet, increasing the reconnection rate as well as reconnection (toroidal) electric field and outflow. On the other hand, the reconnection rate was maintained low under the high guide field Bt/B¦¦∼7 and weak compression IAcc∼0kA. These phenomena suggest that local compression of current sheet triggers its strong dissipation as well as plasma mass ejection, which are responsible for the onset of 3-D localized reconnection.

  2. Fast 3D dark-field reflection-mode photoacoustic microscopy in vivo with a 30-MHz ultrasound linear array

    PubMed Central

    Song, Liang; Maslov, Konstantin; Bitton, Rachel; Shung, K. Kirk; Wang, Lihong V.

    2009-01-01

    We present an in vivo dark-field reflection-mode photoacoustic microscopy system that performs cross-sectional (B-scan) imaging at 50 Hz with realtime beamforming and 3D imaging consisting of 166 B-scan frames at 1 Hz with post-beamforming. To our knowledge, this speed is currently the fastest in photoacoustic imaging. A custom-designed light delivery system is integrated with a 30-MHz ultrasound linear array to realize dark-field reflection-mode imaging. Linear mechanical scanning of the array produces 3D images. The system has axial, lateral, and elevational resolutions of 25, 70, and 200 μm, respectively, and can image 3 mm deep in scattering biological tissues. Volumetric images of subcutaneous vasculature in rats are demonstrated in vivo. Fast 3D photoacoustic microscopy is anticipated to facilitate applications of photoacoustic imaging in biomedical studies that involve dynamics and clinical procedures that demand immediate diagnosis. PMID:19021408

  3. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging

    PubMed Central

    Boulanger, Jérôme; Gueudry, Charles; Münch, Daniel; Cinquin, Bertrand; Paul-Gilloteaux, Perrine; Bardin, Sabine; Guérin, Christophe; Senger, Fabrice; Blanchoin, Laurent; Salamero, Jean

    2014-01-01

    Total internal reflection fluorescence microscopy (TIRFM) is the method of choice to visualize a variety of cellular processes in particular events localized near the plasma membrane of live adherent cells. This imaging technique not relying on particular fluorescent probes provides a high sectioning capability. It is, however, restricted to a single plane. We present here a method based on a versatile design enabling fast multiwavelength azimuthal averaging and incidence angles scanning to computationally reconstruct 3D images sequences. We achieve unprecedented 50-nm axial resolution over a range of 800 nm above the coverslip. We apply this imaging modality to obtain structural and dynamical information about 3D actin architectures. We also temporally decipher distinct Rab11a-dependent exocytosis events in 3D at a rate of seven stacks per second. PMID:25404337

  4. Magnetic Reconnection

    SciTech Connect

    Masaaki Yamada, Russell Kulsrud and Hantao Ji

    2009-09-17

    We review the fundamental physics of magnetic reconnection in laboratory and space plasmas, by discussing results from theory, numerical simulations, observations from space satellites, and the recent results from laboratory plasma experiments. After a brief review of the well-known early work, we discuss representative recent experimental and theoretical work and attempt to interpret the essence of significant modern findings. In the area of local reconnection physics, many significant findings have been made with regard to two- uid physics and are related to the cause of fast reconnection. Profiles of the neutral sheet, Hall currents, and the effects of guide field, collisions, and micro-turbulence are discussed to understand the fundamental processes in a local reconnection layer both in space and laboratory plasmas. While the understanding of the global reconnection dynamics is less developed, notable findings have been made on this issue through detailed documentation of magnetic self-organization phenomena in fusion plasmas. Application of magnetic reconnection physics to astrophysical plasmas is also brie y discussed.

  5. DOMINO: A fast 3D cartesian discrete ordinates solver for reference PWR simulations and SPN validation

    SciTech Connect

    Courau, T.; Moustafa, S.; Plagne, L.; Poncot, A.

    2013-07-01

    As part of its activity, EDF R and D is developing a new nuclear core simulation code named COCAGNE. This code relies on DIABOLO, a Simplified PN (SPN) method to compute the neutron flux inside the core for eigenvalue calculations. In order to assess the accuracy of SPN calculations, we have developed DOMINO, a new 3D Cartesian SN solver. The parallel implementation of DOMINO is very efficient and allows to complete an eigenvalue calculation involving around 300 x 10{sup 9} degrees of freedom within a few hours on a single shared-memory supercomputing node. This computation corresponds to a 26-group S{sub 8} 3D PWR core model used to assess the SPN accuracy. At the pin level, the maximal error for the SP{sub 5} DIABOLO fission production rate is lower than 0.2% compared to the S{sub 8} DOMINO reference for this 3D PWR core model. (authors)

  6. PF2fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps.

    PubMed

    Bettadapura, Radhakrishna; Rasheed, Muhibur; Vollrath, Antje; Bajaj, Chandrajit

    2015-10-01

    There continue to be increasing occurrences of both atomistic structure models in the PDB (possibly reconstructed from X-ray diffraction or NMR data), and 3D reconstructed cryo-electron microscopy (3D EM) maps (albeit at coarser resolution) of the same or homologous molecule or molecular assembly, deposited in the EMDB. To obtain the best possible structural model of the molecule at the best achievable resolution, and without any missing gaps, one typically aligns (match and fits) the atomistic structure model with the 3D EM map. We discuss a new algorithm and generalized framework, named PF(2) fit (Polar Fast Fourier Fitting) for the best possible structural alignment of atomistic structures with 3D EM. While PF(2) fit enables only a rigid, six dimensional (6D) alignment method, it augments prior work on 6D X-ray structure and 3D EM alignment in multiple ways: Scoring. PF(2) fit includes a new scoring scheme that, in addition to rewarding overlaps between the volumes occupied by the atomistic structure and 3D EM map, rewards overlaps between the volumes complementary to them. We quantitatively demonstrate how this new complementary scoring scheme improves upon existing approaches. PF(2) fit also includes two scoring functions, the non-uniform exterior penalty and the skeleton-secondary structure score, and implements the scattering potential score as an alternative to traditional Gaussian blurring. Search. PF(2) fit utilizes a fast polar Fourier search scheme, whose main advantage is the ability to search over uniformly and adaptively sampled subsets of the space of rigid-body motions. PF(2) fit also implements a new reranking search and scoring methodology that considerably improves alignment metrics in results obtained from the initial search. PMID:26469938

  7. PF2 fit: Polar Fast Fourier Matched Alignment of Atomistic Structures with 3D Electron Microscopy Maps

    PubMed Central

    Bettadapura, Radhakrishna; Rasheed, Muhibur; Vollrath, Antje; Bajaj, Chandrajit

    2015-01-01

    There continue to be increasing occurrences of both atomistic structure models in the PDB (possibly reconstructed from X-ray diffraction or NMR data), and 3D reconstructed cryo-electron microscopy (3D EM) maps (albeit at coarser resolution) of the same or homologous molecule or molecular assembly, deposited in the EMDB. To obtain the best possible structural model of the molecule at the best achievable resolution, and without any missing gaps, one typically aligns (match and fits) the atomistic structure model with the 3D EM map. We discuss a new algorithm and generalized framework, named PF2 fit (Polar Fast Fourier Fitting) for the best possible structural alignment of atomistic structures with 3D EM. While PF2 fit enables only a rigid, six dimensional (6D) alignment method, it augments prior work on 6D X-ray structure and 3D EM alignment in multiple ways: Scoring. PF2 fit includes a new scoring scheme that, in addition to rewarding overlaps between the volumes occupied by the atomistic structure and 3D EM map, rewards overlaps between the volumes complementary to them. We quantitatively demonstrate how this new complementary scoring scheme improves upon existing approaches. PF2 fit also includes two scoring functions, the non-uniform exterior penalty and the skeleton-secondary structure score, and implements the scattering potential score as an alternative to traditional Gaussian blurring. Search. PF2 fit utilizes a fast polar Fourier search scheme, whose main advantage is the ability to search over uniformly and adaptively sampled subsets of the space of rigid-body motions. PF2 fit also implements a new reranking search and scoring methodology that considerably improves alignment metrics in results obtained from the initial search. PMID:26469938

  8. A fast rebinning algorithm for 3D positron emission tomography using John's equation

    NASA Astrophysics Data System (ADS)

    Defrise, Michel; Liu, Xuan

    1999-08-01

    Volume imaging in positron emission tomography (PET) requires the inversion of the three-dimensional (3D) x-ray transform. The usual solution to this problem is based on 3D filtered-backprojection (FBP), but is slow. Alternative methods have been proposed which factor the 3D data into independent 2D data sets corresponding to the 2D Radon transforms of a stack of parallel slices. Each slice is then reconstructed using 2D FBP. These so-called rebinning methods are numerically efficient but are approximate. In this paper a new exact rebinning method is derived by exploiting the fact that the 3D x-ray transform of a function is the solution to the second-order partial differential equation first studied by John. The method is proposed for two sampling schemes, one corresponding to a pair of infinite plane detectors and another one corresponding to a cylindrical multi-ring PET scanner. The new FORE-J algorithm has been implemented for this latter geometry and was compared with the approximate Fourier rebinning algorithm FORE and with another exact rebinning algorithm, FOREX. Results with simulated data demonstrate a significant improvement in accuracy compared to FORE, while the reconstruction time is doubled. Compared to FOREX, the FORE-J algorithm is slightly less accurate but more than three times faster.

  9. A fast and accurate method to predict 2D and 3D aerodynamic boundary layer flows

    NASA Astrophysics Data System (ADS)

    Bijleveld, H. A.; Veldman, A. E. P.

    2014-12-01

    A quasi-simultaneous interaction method is applied to predict 2D and 3D aerodynamic flows. This method is suitable for offshore wind turbine design software as it is a very accurate and computationally reasonably cheap method. This study shows the results for a NACA 0012 airfoil. The two applied solvers converge to the experimental values when the grid is refined. We also show that in separation the eigenvalues remain positive thus avoiding the Goldstein singularity at separation. In 3D we show a flow over a dent in which separation occurs. A rotating flat plat is used to show the applicability of the method for rotating flows. The shown capabilities of the method indicate that the quasi-simultaneous interaction method is suitable for design methods for offshore wind turbine blades.

  10. Numerical evidence of undriven, fast reconnection in the solar-wind interaction with earth's magnetosphere: formation of electromagnetic coherent structures.

    PubMed

    Faganello, M; Califano, F; Pegoraro, F

    2008-09-01

    We give evidence for the first time of the onset of undriven fast, collisionless magnetic reconnection during the evolution of an initially homogeneous magnetic field advected in a sheared velocity field. We consider the interaction of the solar wind with the magnetospheric plasma at low latitude and show that reconnection takes place in the layer between adjacent vortices generated by the Kelvin-Helmholtz instability. This process generates coherent magnetic structures with a size comparable to the ion inertial scale, much smaller than the system dimensions but much larger than the electron inertial scale. These magnetic structures are further advected in the plasma in a complex pattern but remain stable over a time interval much longer than their formation time. These results can be crucial for the interpretation of satellite data showing coherent magnetic structures in the Earth's magnetosheath or the magnetotail. PMID:18851219

  11. The fast and accurate 3D-face scanning technology based on laser triangle sensors

    NASA Astrophysics Data System (ADS)

    Wang, Jinjiang; Chang, Tianyu; Ge, Baozhen; Tian, Qingguo; Chen, Yang; Kong, Bin

    2013-08-01

    A laser triangle scanning method and the structure of 3D-face measurement system were introduced. In presented system, a liner laser source was selected as an optical indicated signal in order to scanning a line one times. The CCD image sensor was used to capture image of the laser line modulated by human face. The system parameters were obtained by system calibrated calculated. The lens parameters of image part of were calibrated with machine visual image method and the triangle structure parameters were calibrated with fine wire paralleled arranged. The CCD image part and line laser indicator were set with a linear motor carry which can achieve the line laser scanning form top of the head to neck. For the nose is ledge part and the eyes are sunk part, one CCD image sensor can not obtain the completed image of laser line. In this system, two CCD image sensors were set symmetric at two sides of the laser indicator. In fact, this structure includes two laser triangle measure units. Another novel design is there laser indicators were arranged in order to reduce the scanning time for it is difficult for human to keep static for longer time. The 3D data were calculated after scanning. And further data processing include 3D coordinate refine, mesh calculate and surface show. Experiments show that this system has simply structure, high scanning speed and accurate. The scanning range covers the whole head of adult, the typical resolution is 0.5mm.

  12. Fast error simulation of optical 3D measurements at translucent objects

    NASA Astrophysics Data System (ADS)

    Lutzke, P.; Kühmstedt, P.; Notni, G.

    2012-09-01

    The scan results of optical 3D measurements at translucent objects deviate from the real objects surface. This error is caused by the fact that light is scattered in the objects volume and is not exclusively reflected at its surface. A few approaches were made to separate the surface reflected light from the volume scattered. For smooth objects the surface reflected light is dominantly concentrated in specular direction and could only be observed from a point in this direction. Thus the separation either leads to measurement results only creating data for near specular directions or provides data from not well separated areas. To ensure the flexibility and precision of optical 3D measurement systems for translucent materials it is necessary to enhance the understanding of the error forming process. For this purpose a technique for simulating the 3D measurement at translucent objects is presented. A simple error model is shortly outlined and extended to an efficient simulation environment based upon ordinary raytracing methods. In comparison the results of a Monte-Carlo simulation are presented. Only a few material and object parameters are needed for the raytracing simulation approach. The attempt of in-system collection of these material and object specific parameters is illustrated. The main concept of developing an error-compensation method based on the simulation environment and the collected parameters is described. The complete procedure is using both, the surface reflected and the volume scattered light for further processing.

  13. WaveQ3D: Fast and accurate acoustic transmission loss (TL) eigenrays, in littoral environments

    NASA Astrophysics Data System (ADS)

    Reilly, Sean M.

    This study defines a new 3D Gaussian ray bundling acoustic transmission loss model in geodetic coordinates: latitude, longitude, and altitude. This approach is designed to lower the computation burden of computing accurate environmental effects in sonar training application by eliminating the need to transform the ocean environment into a collection of Nx2D Cartesian radials. This approach also improves model accuracy by incorporating real world 3D effects, like horizontal refraction, into the model. This study starts with derivations for a 3D variant of Gaussian ray bundles in this coordinate system. To verify the accuracy of this approach, acoustic propagation predictions of transmission loss, time of arrival, and propagation direction are compared to analytic solutions and other models. To validate the model's ability to predict real world phenomena, predictions of transmission loss and propagation direction are compared to at-sea measurements, in an environment where strong horizontal refraction effect have been observed. This model has been integrated into U.S. Navy active sonar training system applications, where testing has demonstrated its ability to improve transmission loss calculation speed without sacrificing accuracy.

  14. Progressive attenuation fields: Fast 2D-3D image registration without precomputation

    SciTech Connect

    Rohlfing, Torsten; Russakoff, Daniel B.; Denzler, Joachim; Mori, Kensaku; Maurer, Calvin R. Jr.

    2005-09-15

    Computation of digitally reconstructed radiograph (DRR) images is the rate-limiting step in most current intensity-based algorithms for the registration of three-dimensional (3D) images to two-dimensional (2D) projection images. This paper introduces and evaluates the progressive attenuation field (PAF), which is a new method to speed up DRR computation. A PAF is closely related to an attenuation field (AF). A major difference is that a PAF is constructed on the fly as the registration proceeds; it does not require any precomputation time, nor does it make any prior assumptions of the patient pose or limit the permissible range of patient motion. A PAF effectively acts as a cache memory for projection values once they are computed, rather than as a lookup table for precomputed projections like standard AFs. We use a cylindrical attenuation field parametrization, which is better suited for many medical applications of 2D-3D registration than the usual two-plane parametrization. The computed attenuation values are stored in a hash table for time-efficient storage and access. Using clinical gold-standard spine image data sets from five patients, we demonstrate consistent speedups of intensity-based 2D-3D image registration using PAF DRRs by a factor of 10 over conventional ray casting DRRs with no decrease of registration accuracy or robustness.

  15. Fast imaging of laboratory core floods using 3D compressed sensing RARE MRI.

    PubMed

    Ramskill, N P; Bush, I; Sederman, A J; Mantle, M D; Benning, M; Anger, B C; Appel, M; Gladden, L F

    2016-09-01

    Three-dimensional (3D) imaging of the fluid distributions within the rock is essential to enable the unambiguous interpretation of core flooding data. Magnetic resonance imaging (MRI) has been widely used to image fluid saturation in rock cores; however, conventional acquisition strategies are typically too slow to capture the dynamic nature of the displacement processes that are of interest. Using Compressed Sensing (CS), it is possible to reconstruct a near-perfect image from significantly fewer measurements than was previously thought necessary, and this can result in a significant reduction in the image acquisition times. In the present study, a method using the Rapid Acquisition with Relaxation Enhancement (RARE) pulse sequence with CS to provide 3D images of the fluid saturation in rock core samples during laboratory core floods is demonstrated. An objective method using image quality metrics for the determination of the most suitable regularisation functional to be used in the CS reconstructions is reported. It is shown that for the present application, Total Variation outperforms the Haar and Daubechies3 wavelet families in terms of the agreement of their respective CS reconstructions with a fully-sampled reference image. Using the CS-RARE approach, 3D images of the fluid saturation in the rock core have been acquired in 16min. The CS-RARE technique has been applied to image the residual water saturation in the rock during a water-water displacement core flood. With a flow rate corresponding to an interstitial velocity of vi=1.89±0.03ftday(-1), 0.1 pore volumes were injected over the course of each image acquisition, a four-fold reduction when compared to a fully-sampled RARE acquisition. Finally, the 3D CS-RARE technique has been used to image the drainage of dodecane into the water-saturated rock in which the dynamics of the coalescence of discrete clusters of the non-wetting phase are clearly observed. The enhancement in the temporal resolution that has

  16. Fast imaging of laboratory core floods using 3D compressed sensing RARE MRI

    NASA Astrophysics Data System (ADS)

    Ramskill, N. P.; Bush, I.; Sederman, A. J.; Mantle, M. D.; Benning, M.; Anger, B. C.; Appel, M.; Gladden, L. F.

    2016-09-01

    Three-dimensional (3D) imaging of the fluid distributions within the rock is essential to enable the unambiguous interpretation of core flooding data. Magnetic resonance imaging (MRI) has been widely used to image fluid saturation in rock cores; however, conventional acquisition strategies are typically too slow to capture the dynamic nature of the displacement processes that are of interest. Using Compressed Sensing (CS), it is possible to reconstruct a near-perfect image from significantly fewer measurements than was previously thought necessary, and this can result in a significant reduction in the image acquisition times. In the present study, a method using the Rapid Acquisition with Relaxation Enhancement (RARE) pulse sequence with CS to provide 3D images of the fluid saturation in rock core samples during laboratory core floods is demonstrated. An objective method using image quality metrics for the determination of the most suitable regularisation functional to be used in the CS reconstructions is reported. It is shown that for the present application, Total Variation outperforms the Haar and Daubechies3 wavelet families in terms of the agreement of their respective CS reconstructions with a fully-sampled reference image. Using the CS-RARE approach, 3D images of the fluid saturation in the rock core have been acquired in 16 min. The CS-RARE technique has been applied to image the residual water saturation in the rock during a water-water displacement core flood. With a flow rate corresponding to an interstitial velocity of vi = 1.89 ± 0.03 ft day-1, 0.1 pore volumes were injected over the course of each image acquisition, a four-fold reduction when compared to a fully-sampled RARE acquisition. Finally, the 3D CS-RARE technique has been used to image the drainage of dodecane into the water-saturated rock in which the dynamics of the coalescence of discrete clusters of the non-wetting phase are clearly observed. The enhancement in the temporal resolution

  17. Fast magnetic reconnection in low-density electron-positron plasmas

    SciTech Connect

    Bessho, Naoki; Bhattacharjee, A.

    2010-10-15

    Two-dimensional particle-in-cell simulations have been performed to study magnetic reconnection in low-density electron-positron plasmas without a guide magnetic field. Impulsive reconnection rates become of the order of unity when the background density is much smaller than 10% of the density in the initial current layer. It is demonstrated that the outflow speed is less than the upstream Alfven speed, and that the time derivative of the density must be taken into account in the definition of the reconnection rate. The reconnection electric fields in the low-density regime become much larger than the ones in the high-density regime, and it is possible to accelerate the particles to high energies more efficiently. The inertial term in the generalized Ohm's law is the most dominant term that supports a large reconnection electric field. An effective collisionless resistivity is produced and tracks the extension of the diffusion region in the late stage of the reconnection dynamics, and significant broadening of the diffusion region is observed. Because of the broadening of the diffusion region, no secondary islands, which have been considered to play a role to limit the diffusion region, are generated during the extension of the diffusion region in the outflow direction.

  18. Fast quantitative susceptibility mapping using 3D EPI and total generalized variation.

    PubMed

    Langkammer, Christian; Bredies, Kristian; Poser, Benedikt A; Barth, Markus; Reishofer, Gernot; Fan, Audrey Peiwen; Bilgic, Berkin; Fazekas, Franz; Mainero, Caterina; Ropele, Stefan

    2015-05-01

    Quantitative susceptibility mapping (QSM) allows new insights into tissue composition and organization by assessing its magnetic property. Previous QSM studies have already demonstrated that magnetic susceptibility is highly sensitive to myelin density and fiber orientation as well as to para- and diamagnetic trace elements. Image resolution in QSM with current approaches is limited by the long acquisition time of 3D scans and the need for high signal to noise ratio (SNR) to solve the dipole inversion problem. We here propose a new total-generalized-variation (TGV) based method for QSM reconstruction, which incorporates individual steps of phase unwrapping, background field removal and dipole inversion in a single iteration, thus yielding a robust solution to the reconstruction problem. This approach has beneficial characteristics for low SNR data, allowing for phase data to be rapidly acquired with a 3D echo planar imaging (EPI) sequence. The proposed method was evaluated with a numerical phantom and in vivo at 3 and 7 T. Compared to total variation (TV), TGV-QSM enforced higher order smoothness which yielded solutions closer to the ground truth and prevented stair-casing artifacts. The acquisition time for images with 1mm isotropic resolution and whole brain coverage was 10s on a clinical 3 Tesla scanner. In conclusion, 3D EPI acquisition combined with single-step TGV reconstruction yields reliable QSM images of the entire brain with 1mm isotropic resolution in seconds. The short acquisition time combined with the robust reconstruction may enable new QSM applications in less compliant populations, clinical susceptibility tensor imaging, and functional resting state examinations. PMID:25731991

  19. Fast myocardial strain estimation from 3D ultrasound through elastic image registration with analytic regularization

    NASA Astrophysics Data System (ADS)

    Chakraborty, Bidisha; Heyde, Brecht; Alessandrini, Martino; D'hooge, Jan

    2016-04-01

    Image registration techniques using free-form deformation models have shown promising results for 3D myocardial strain estimation from ultrasound. However, the use of this technique has mostly been limited to research institutes due to the high computational demand, which is primarily due to the computational load of the regularization term ensuring spatially smooth cardiac strain estimates. Indeed, this term typically requires evaluating derivatives of the transformation field numerically in each voxel of the image during every iteration of the optimization process. In this paper, we replace this time-consuming step with a closed-form solution directly associated with the transformation field resulting in a speed up factor of ~10-60,000, for a typical 3D B-mode image of 2503 and 5003 voxels, depending upon the size and the parametrization of the transformation field. The performance of the numeric and the analytic solutions was contrasted by computing tracking and strain accuracy on two realistic synthetic 3D cardiac ultrasound sequences, mimicking two ischemic motion patterns. Mean and standard deviation of the displacement errors over the cardiac cycle for the numeric and analytic solutions were 0.68+/-0.40 mm and 0.75+/-0.43 mm respectively. Correlations for the radial, longitudinal and circumferential strain components at end-systole were 0.89, 0.83 and 0.95 versus 0.90, 0.88 and 0.92 for the numeric and analytic regularization respectively. The analytic solution matched the performance of the numeric solution as no statistically significant differences (p>0.05) were found when expressed in terms of bias or limits-of-agreement.

  20. Robust 2D/3D registration for fast-flexion motion of the knee joint using hybrid optimization.

    PubMed

    Ohnishi, Takashi; Suzuki, Masahiko; Kobayashi, Tatsuya; Naomoto, Shinji; Sukegawa, Tomoyuki; Nawata, Atsushi; Haneishi, Hideaki

    2013-01-01

    Previously, we proposed a 2D/3D registration method that uses Powell's algorithm to obtain 3D motion of a knee joint by 3D computed-tomography and bi-plane fluoroscopic images. The 2D/3D registration is performed consecutively and automatically for each frame of the fluoroscopic images. This method starts from the optimum parameters of the previous frame for each frame except for the first one, and it searches for the next set of optimum parameters using Powell's algorithm. However, if the flexion motion of the knee joint is fast, it is likely that Powell's algorithm will provide a mismatch because the initial parameters are far from the correct ones. In this study, we applied a hybrid optimization algorithm (HPS) combining Powell's algorithm with the Nelder-Mead simplex (NM-simplex) algorithm to overcome this problem. The performance of the HPS was compared with the separate performances of Powell's algorithm and the NM-simplex algorithm, the Quasi-Newton algorithm and hybrid optimization algorithm with the Quasi-Newton and NM-simplex algorithms with five patient data sets in terms of the root-mean-square error (RMSE), target registration error (TRE), success rate, and processing time. The RMSE, TRE, and the success rate of the HPS were better than those of the other optimization algorithms, and the processing time was similar to that of Powell's algorithm alone. PMID:23138929

  1. 3D pre-stack depth migration of receiver functions with the fast marching method: a Kirchhoff approach

    NASA Astrophysics Data System (ADS)

    Cheng, Cheng; Bodin, Thomas; Allen, Richard M.

    2016-02-01

    We present a novel 3D pre-stack Kirchhoff depth migration (PKDM) method for teleseismic receiver functions. The proposed algorithm considers the effects of diffraction, scattering, and travel time alteration caused by 3D volumetric heterogeneities. It is therefore particularly useful for imaging complex 3D structures such as dipping discontinuities, which is hard to accomplish with traditional methods. The scheme is based on the acoustic wave migration principle, where at each time step of the receiver function, the energy is migrated back to the ensemble of potential conversion points in the image, given a smooth 3D reference model. Travel times for P and S waves are computed with an efficient Eikonal solver, the Fast Marching Method. We also consider elastic scattering patterns, where the amplitude of converted S waves depends on the angle between the incident P wave, and the scattered S wave. Synthetic experiments demonstrate the validity of the method for a variety of dipping angle discontinuities. Comparison with the widely used Common Conversion Point (CCP) stacking method reveals that our migration shows considerable improvement. For example, the effect of multiple reflections that usually produce apparent discontinuities is avoided. The proposed approach is practical, computationally efficient, and is therefore a potentially powerful alternative to standard CCP methods for imaging large-scale continental structure under dense networks.

  2. Fast and efficient particle reconstruction on a 3D grid using sparsity

    NASA Astrophysics Data System (ADS)

    Cornic, P.; Champagnat, F.; Cheminet, A.; Leclaire, B.; Le Besnerais, G.

    2015-03-01

    We propose an approach for efficient localization and intensity reconstruction of particles on a 3D grid based on sparsity principles. The computational complexity of the method is limited by using the particle volume reconstruction paradigm (Champagnat et al. in Meas Sci Technol 25, 2014) and a reduction in the problem dimension. Tests on synthetic and experimental data show that the proposed method leads to more efficient detections and to reconstructions of higher quality than classical tomoPIV approaches on a large range of seeding densities, up to ppp ≈ 0.12.

  3. Atlas Toolkit: Fast registration of 3D morphological datasets in the absence of landmarks

    PubMed Central

    Grocott, Timothy; Thomas, Paul; Münsterberg, Andrea E.

    2016-01-01

    Image registration is a gateway technology for Developmental Systems Biology, enabling computational analysis of related datasets within a shared coordinate system. Many registration tools rely on landmarks to ensure that datasets are correctly aligned; yet suitable landmarks are not present in many datasets. Atlas Toolkit is a Fiji/ImageJ plugin collection offering elastic group-wise registration of 3D morphological datasets, guided by segmentation of the interesting morphology. We demonstrate the method by combinatorial mapping of cell signalling events in the developing eyes of chick embryos, and use the integrated datasets to predictively enumerate Gene Regulatory Network states. PMID:26864723

  4. 3D Multislab, Multishot Acquisition for Fast, Whole-Brain MR Elastography with High SNR Efficiency

    PubMed Central

    Johnson, Curtis L; Holtrop, Joseph L; McGarry, Matthew DJ; Weaver, John B; Paulsen, Keith D; Georgiadis, John G; Sutton, Bradley P

    2014-01-01

    Purpose To develop an acquisition scheme for generating magnetic resonance elastography (MRE) displacement data with whole-brain coverage, high spatial resolution, and adequate signal-to-noise ratio (SNR) in a short scan time. Theory and Methods A 3D multislab, multishot acquisition for whole-brain MRE with 2.0 mm isotropic spatial resolution is proposed. The multislab approach allowed for the use of short repetition time to achieve very high SNR efficiency. High SNR efficiency allowed for a reduced acquisition time of only six minutes while the minimum SNR needed for inversion was maintained. Results The mechanical property maps estimated from whole-brain displacement data with nonlinear inversion (NLI) demonstrated excellent agreement with neuroanatomical features, including the cerebellum and brainstem. A comparison with an equivalent 2D acquisition illustrated the improvement in SNR efficiency of the 3D multislab acquisition. The flexibility afforded by the high SNR efficiency allowed for higher resolution with a 1.6 mm isotropic voxel size, which generated higher estimates of brainstem stiffness compared with the 2.0 mm isotropic acquisition. Conclusions The acquisition presented allows for the capture of whole-brain MRE displacement data in a short scan time, and may be used to generate local mechanical property estimates of neuroanatomical features throughout the brain. PMID:24347237

  5. Fast and Memory-Efficient Topological Denoising of 2D and 3D Scalar Fields.

    PubMed

    Günther, David; Jacobson, Alec; Reininghaus, Jan; Seidel, Hans-Peter; Sorkine-Hornung, Olga; Weinkauf, Tino

    2014-12-01

    Data acquisition, numerical inaccuracies, and sampling often introduce noise in measurements and simulations. Removing this noise is often necessary for efficient analysis and visualization of this data, yet many denoising techniques change the minima and maxima of a scalar field. For example, the extrema can appear or disappear, spatially move, and change their value. This can lead to wrong interpretations of the data, e.g., when the maximum temperature over an area is falsely reported being a few degrees cooler because the denoising method is unaware of these features. Recently, a topological denoising technique based on a global energy optimization was proposed, which allows the topology-controlled denoising of 2D scalar fields. While this method preserves the minima and maxima, it is constrained by the size of the data. We extend this work to large 2D data and medium-sized 3D data by introducing a novel domain decomposition approach. It allows processing small patches of the domain independently while still avoiding the introduction of new critical points. Furthermore, we propose an iterative refinement of the solution, which decreases the optimization energy compared to the previous approach and therefore gives smoother results that are closer to the input. We illustrate our technique on synthetic and real-world 2D and 3D data sets that highlight potential applications. PMID:26356972

  6. Contrast-Based 3D/2D Registration of the Left Atrium: Fast versus Consistent

    PubMed Central

    Kowalewski, Christopher; Kurzidim, Klaus; Strobel, Norbert; Hornegger, Joachim

    2016-01-01

    For augmented fluoroscopy during cardiac ablation, a preoperatively acquired 3D model of a patient's left atrium (LA) can be registered to X-ray images recorded during a contrast agent (CA) injection. An automatic registration method that works also for small amounts of CA is desired. We propose two similarity measures: The first focuses on edges of the patient anatomy. The second computes a contrast agent distribution estimate (CADE) inside the 3D model and rates its consistency with the CA as seen in biplane fluoroscopic images. Moreover, temporal filtering on the obtained registration results of a sequence is applied using a Markov chain framework. Evaluation was performed on 11 well-contrasted clinical angiographic sequences and 10 additional sequences with less CA. For well-contrasted sequences, the error for all 73 frames was 7.9 ± 6.3 mm and it dropped to 4.6 ± 4.0 mm when registering to an automatically selected, well enhanced frame in each sequence. Temporal filtering reduced the error for all frames from 7.9 ± 6.3 mm to 5.7 ± 4.6 mm. The error was typically higher if less CA was used. A combination of both similarity measures outperforms a previously proposed similarity measure. The mean accuracy for well contrasted sequences is in the range of other proposed manual registration methods. PMID:27051412

  7. Radial subsampling for fast cost function computation in intensity-based 3D image registration

    NASA Astrophysics Data System (ADS)

    Boettger, Thomas; Wolf, Ivo; Meinzer, Hans-Peter; Celi, Juan Carlos

    2007-03-01

    Image registration is always a trade-off between accuracy and speed. Looking towards clinical scenarios the time for bringing two or more images into registration should be around a few seconds only. We present a new scheme for subsampling 3D-image data to allow for efficient computation of cost functions in intensity-based image registration. Starting from an arbitrary center point voxels are sampled along scan lines which do radially extend from the center point. We analyzed the characteristics of different cost functions computed on the sub-sampled data and compared them to known cost functions with respect to local optima. Results show the cost functions are smooth and give high peaks at the expected optima. Furthermore we investigated capture range of cost functions computed under the new subsampling scheme. Capture range was remarkably better for the new scheme compared to metrics using all voxels or different subsampling schemes and high registration accuracy was achieved as well. The most important result is the improvement in terms of speed making this scheme very interesting for clinical scenarios. We conclude using the new subsampling scheme intensity-based 3D image registration can be performed much faster than using other approaches while maintaining high accuracy. A variety of different extensions of the new approach is conceivable, e.g. non-regular distribution of the scan lines or not to let the scan lines start from a center point only, but from the surface of an organ model for example.

  8. Contrast-Based 3D/2D Registration of the Left Atrium: Fast versus Consistent.

    PubMed

    Hoffmann, Matthias; Kowalewski, Christopher; Maier, Andreas; Kurzidim, Klaus; Strobel, Norbert; Hornegger, Joachim

    2016-01-01

    For augmented fluoroscopy during cardiac ablation, a preoperatively acquired 3D model of a patient's left atrium (LA) can be registered to X-ray images recorded during a contrast agent (CA) injection. An automatic registration method that works also for small amounts of CA is desired. We propose two similarity measures: The first focuses on edges of the patient anatomy. The second computes a contrast agent distribution estimate (CADE) inside the 3D model and rates its consistency with the CA as seen in biplane fluoroscopic images. Moreover, temporal filtering on the obtained registration results of a sequence is applied using a Markov chain framework. Evaluation was performed on 11 well-contrasted clinical angiographic sequences and 10 additional sequences with less CA. For well-contrasted sequences, the error for all 73 frames was 7.9 ± 6.3 mm and it dropped to 4.6 ± 4.0 mm when registering to an automatically selected, well enhanced frame in each sequence. Temporal filtering reduced the error for all frames from 7.9 ± 6.3 mm to 5.7 ± 4.6 mm. The error was typically higher if less CA was used. A combination of both similarity measures outperforms a previously proposed similarity measure. The mean accuracy for well contrasted sequences is in the range of other proposed manual registration methods. PMID:27051412

  9. Fast parallel interferometric 3D tracking of numerous optically trapped particles and their hydrodynamic interaction.

    PubMed

    Ruh, Dominic; Tränkle, Benjamin; Rohrbach, Alexander

    2011-10-24

    Multi-dimensional, correlated particle tracking is a key technology to reveal dynamic processes in living and synthetic soft matter systems. In this paper we present a new method for tracking micron-sized beads in parallel and in all three dimensions - faster and more precise than existing techniques. Using an acousto-optic deflector and two quadrant-photo-diodes, we can track numerous optically trapped beads at up to tens of kHz with a precision of a few nanometers by back-focal plane interferometry. By time-multiplexing the laser focus, we can calibrate individually all traps and all tracking signals in a few seconds and in 3D. We show 3D histograms and calibration constants for nine beads in a quadratic arrangement, although trapping and tracking is easily possible for more beads also in arbitrary 2D arrangements. As an application, we investigate the hydrodynamic coupling and diffusion anomalies of spheres trapped in a 3 × 3 arrangement. PMID:22109012

  10. Theoretical fast non-intrusive 3-D temperature distribution measurement within scattering medium from flame emission image analysis

    NASA Astrophysics Data System (ADS)

    Huang, Qun-xing; Yan, Fei Wang Jian-hua; Chi, Yong

    2013-04-01

    A new approach to inverse radiation analysis is presented for non-intrusive 3-D flame temperature reconstruction using flame emission images from four CCD camera detectors installed on the furnace wall. The scattering from participating medium in the flame was considered by combining the discrete radiative transfer method with the discrete ordinate method. A modified minimum residual algorithm was employed to calculate the least squares solution of the ill-conditioned inverse problem. A numerical test problem simulating real temperature measurements in an industrial furnace was used to assess the performance of the proposed method. These assessments indicate that this method is capable of reconstructing 3-D temperature distributions fast and accurately, even with noisy flame emission data. Such a capability has potential in real-time temperature measurement for combustion optimization and pollution emission control.

  11. Fast and effective occlusion culling for 3D holographic displays by inverse orthographic projection with low angular sampling.

    PubMed

    Jia, Jia; Liu, Juan; Jin, Guofan; Wang, Yongtian

    2014-09-20

    Occlusion culling is an important process that produces correct depth cues for observers in holographic displays, whereas current methods suffer from occlusion errors or high computational loads. We propose a fast and effective method for occlusion culling based on multiple light-point sampling planes and an inverse orthographic projection technique. Multiple light-point sampling planes are employed to remove the hidden surfaces for each direction of the view of the three-dimensional (3D) scene by forward orthographic projection, and the inverse orthographic projection technique is used to determine the effective sampling points of the 3D scene. A numerical simulation and an optical experiment are performed. The results show that this approach can realize accurate occlusion effects, smooth motion parallax, and continuous depth using low angular sampling without any extra computation costs. PMID:25322109

  12. Very fast road database verification using textured 3D city models obtained from airborne imagery

    NASA Astrophysics Data System (ADS)

    Bulatov, Dimitri; Ziems, Marcel; Rottensteiner, Franz; Pohl, Melanie

    2014-10-01

    Road databases are known to be an important part of any geodata infrastructure, e.g. as the basis for urban planning or emergency services. Updating road databases for crisis events must be performed quickly and with the highest possible degree of automation. We present a semi-automatic algorithm for road verification using textured 3D city models, starting from aerial or even UAV-images. This algorithm contains two processes, which exchange input and output, but basically run independently from each other. These processes are textured urban terrain reconstruction and road verification. The first process contains a dense photogrammetric reconstruction of 3D geometry of the scene using depth maps. The second process is our core procedure, since it contains various methods for road verification. Each method represents a unique road model and a specific strategy, and thus is able to deal with a specific type of roads. Each method is designed to provide two probability distributions, where the first describes the state of a road object (correct, incorrect), and the second describes the state of its underlying road model (applicable, not applicable). Based on the Dempster-Shafer Theory, both distributions are mapped to a single distribution that refers to three states: correct, incorrect, and unknown. With respect to the interaction of both processes, the normalized elevation map and the digital orthophoto generated during 3D reconstruction are the necessary input - together with initial road database entries - for the road verification process. If the entries of the database are too obsolete or not available at all, sensor data evaluation enables classification of the road pixels of the elevation map followed by road map extraction by means of vectorization and filtering of the geometrically and topologically inconsistent objects. Depending on the time issue and availability of a geo-database for buildings, the urban terrain reconstruction procedure has semantic models

  13. Mapping of the spontaneous deletion in the Ap3d1 gene of mocha mice: fast and reliable genotyping

    PubMed Central

    Drasbek, Kim Ryun; Holm, Mai Marie; Delenclos, Marion; Jensen, Kimmo

    2008-01-01

    Background The mocha mouse carries a spontaneous deletion in the Ap3d1 gene, encoding the delta 1 subunit of the adaptor related protein complex 3, (Ap3d1), and subsequently lack the expression of functional AP-3. This leads to a deficiency in vesicle transport and storage, which affects neurotransmitter vesicle turnover and release in the central nervous system. Since the genomic sequence of the Ap3d1 gene of mocha mouse is not known, precise mapping of the deletion as well as reliable genotyping protocols are lacking. Findings We sequenced the Ap3d1 gene (HGNC GeneID: 8943) around the deletion site in the mocha mouse and revealed a 10639 bp deletion covering exon 2 to 6. Subsequently, new PCR primers were designed yielding a reliable genotyping protocol of both newborn and adult tissue. To examine the genotypes further, hippocampal neurons were cultured from mocha and control mice. Patch-clamp recordings showed that mocha neurons had a higher input resistance, and that autaptic EPSC in mocha cultures depressed faster and stronger as compared with control cultures. Conclusion Our study reports the sequence of the deleted part of the Ap3d1 gene in mocha mice, as well as a reliable PCR-based genotyping protocol. We cultured hippocampal neurons from control and mocha mice, and found a difference in input resistance of the neurons, and in the synaptic short-term plasticity of glutamatergic autapses showing a larger synaptic depression than controls. The described procedures may be useful for the future utilization of the mocha mouse as a model of defective vesicle biogenesis. Importantly, as genotyping by eye color is complicated in newborn mice, the designed protocol is so fast and reliable that newborn mice could rapidly be genotyped and hippocampal neurons dissociated and cultured, which is normally best done at P0-P2. PMID:19032734

  14. Fast and Robust Sixth Order Multigrid Computation for 3D Convection Diffusion Equation.

    PubMed

    Wang, Yin; Zhang, Jun

    2010-10-15

    We present a sixth order explicit compact finite difference scheme to solve the three dimensional (3D) convection diffusion equation. We first use multiscale multigrid method to solve the linear systems arising from a 19-point fourth order discretization scheme to compute the fourth order solutions on both the coarse grid and the fine grid. Then an operator based interpolation scheme combined with an extrapolation technique is used to approximate the sixth order accurate solution on the fine grid. Since the multigrid method using a standard point relaxation smoother may fail to achieve the optimal grid independent convergence rate for solving convection diffusion equation with a high Reynolds number, we implement the plane relaxation smoother in the multigrid solver to achieve better grid independency. Supporting numerical results are presented to demonstrate the efficiency and accuracy of the sixth order compact scheme (SOC), compared with the previously published fourth order compact scheme (FOC). PMID:21151737

  15. Fast DRR generation for 2D to 3D registration on GPUs

    SciTech Connect

    Tornai, Gabor Janos; Cserey, Gyoergy

    2012-08-15

    Purpose: The generation of digitally reconstructed radiographs (DRRs) is the most time consuming step on the CPU in intensity based two-dimensional x-ray to three-dimensional (CT or 3D rotational x-ray) medical image registration, which has application in several image guided interventions. This work presents optimized DRR rendering on graphical processor units (GPUs) and compares performance achievable on four commercially available devices. Methods: A ray-cast based DRR rendering was implemented for a 512 Multiplication-Sign 512 Multiplication-Sign 72 CT volume. The block size parameter was optimized for four different GPUs for a region of interest (ROI) of 400 Multiplication-Sign 225 pixels with different sampling ratios (1.1%-9.1% and 100%). Performance was statistically evaluated and compared for the four GPUs. The method and the block size dependence were validated on the latest GPU for several parameter settings with a public gold standard dataset (512 Multiplication-Sign 512 Multiplication-Sign 825 CT) for registration purposes. Results: Depending on the GPU, the full ROI is rendered in 2.7-5.2 ms. If sampling ratio of 1.1%-9.1% is applied, execution time is in the range of 0.3-7.3 ms. On all GPUs, the mean of the execution time increased linearly with respect to the number of pixels if sampling was used. Conclusions: The presented results outperform other results from the literature. This indicates that automatic 2D to 3D registration, which typically requires a couple of hundred DRR renderings to converge, can be performed quasi on-line, in less than a second or depending on the application and hardware in less than a couple of seconds. Accordingly, a whole new field of applications is opened for image guided interventions, where the registration is continuously performed to match the real-time x-ray.

  16. A fast 3-D object recognition algorithm for the vision system of a special-purpose dexterous manipulator

    NASA Technical Reports Server (NTRS)

    Hung, Stephen H. Y.

    1989-01-01

    A fast 3-D object recognition algorithm that can be used as a quick-look subsystem to the vision system for the Special-Purpose Dexterous Manipulator (SPDM) is described. Global features that can be easily computed from range data are used to characterize the images of a viewer-centered model of an object. This algorithm will speed up the processing by eliminating the low level processing whenever possible. It may identify the object, reject a set of bad data in the early stage, or create a better environment for a more powerful algorithm to carry the work further.

  17. A fast technique applied to the analysis of Resistive Wall Modes with 3D conducting structures

    SciTech Connect

    Rubinacci, Guglielmo Liu, Yueqiang

    2009-03-20

    This paper illustrates the development of a 'fast' technique for the analysis of Resistive Wall Modes (RWMs) in fusion devices with three-dimensional conducting structures, by means of the recently developed CarMa code. Thanks to its peculiar features, the computational cost scales almost linearly with the number of discrete unknowns. Some large scale problems are solved in configurations of interest for the International Thermonuclear Experimental Reactor (ITER)

  18. A fast nested dissection solver for Cartesian 3D elliptic problems using hierarchical matrices

    NASA Astrophysics Data System (ADS)

    Schmitz, Phillip G.; Ying, Lexing

    2014-02-01

    We present a fast algorithm for solutions to linear systems arising from three dimensional elliptic problems on a regular Cartesian mesh. We follow the approach of Schmitz and Ying (2012) on combining the nested dissection matrix factorization method with hierarchical matrices in two dimensions and extend it to the three dimensional case. A theoretical linear time complexity is derived and a more practical variant with slightly worse scaling is demonstrated.

  19. Fast, automatic, and accurate catheter reconstruction in HDR brachytherapy using an electromagnetic 3D tracking system

    SciTech Connect

    Poulin, Eric; Racine, Emmanuel; Beaulieu, Luc; Binnekamp, Dirk

    2015-03-15

    Purpose: In high dose rate brachytherapy (HDR-B), current catheter reconstruction protocols are relatively slow and error prone. The purpose of this technical note is to evaluate the accuracy and the robustness of an electromagnetic (EM) tracking system for automated and real-time catheter reconstruction. Methods: For this preclinical study, a total of ten catheters were inserted in gelatin phantoms with different trajectories. Catheters were reconstructed using a 18G biopsy needle, used as an EM stylet and equipped with a miniaturized sensor, and the second generation Aurora{sup ®} Planar Field Generator from Northern Digital Inc. The Aurora EM system provides position and orientation value with precisions of 0.7 mm and 0.2°, respectively. Phantoms were also scanned using a μCT (GE Healthcare) and Philips Big Bore clinical computed tomography (CT) system with a spatial resolution of 89 μm and 2 mm, respectively. Reconstructions using the EM stylet were compared to μCT and CT. To assess the robustness of the EM reconstruction, five catheters were reconstructed twice and compared. Results: Reconstruction time for one catheter was 10 s, leading to a total reconstruction time inferior to 3 min for a typical 17-catheter implant. When compared to the μCT, the mean EM tip identification error was 0.69 ± 0.29 mm while the CT error was 1.08 ± 0.67 mm. The mean 3D distance error was found to be 0.66 ± 0.33 mm and 1.08 ± 0.72 mm for the EM and CT, respectively. EM 3D catheter trajectories were found to be more accurate. A maximum difference of less than 0.6 mm was found between successive EM reconstructions. Conclusions: The EM reconstruction was found to be more accurate and precise than the conventional methods used for catheter reconstruction in HDR-B. This approach can be applied to any type of catheters and applicators.

  20. Observations and models of magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Barta, Miroslav

    2015-08-01

    Magnetic reconnection is now almost unanimously considered to be a key plasma process for energy release in solar and stellar flares. Recent decade have seen rapid development in the theory, simulations and searching for observational evidences of magnetic reconnection being in action in the core of flares. Modern modeling approach involves many realistic aspects of magnetic reconnection such as intrinsically 3D nature of the process and, namely, its highly dynamic character connected with violent formation of plasmoids at many scales. The cascade of plasmoid formation represents natural process of fast, turbulent energy transfer to the kinetic dissipation scale. This concept, revealed by numerical simulations, has found its ground in the theory of (ideal) plasmoid instability in current layers with high aspect ratio. The plasmoid dominated reconnection regime is capable to account for many puzzling dilemmas in the flare physics ranging from the observation-demanded energy release rate vs. standard reconnection-regime timescales, observed organized large-scale structures vs. signatures of fragmented energy release etc. The talk aims at reviewing recent theoretical and simulation development in this direction and observational support for the concept of plasmoid-driven reconnection cascade namely in solar flares.

  1. Development of a 3D numerical methodology for fast prediction of gun blast induced loading

    NASA Astrophysics Data System (ADS)

    Costa, E.; Lagasco, F.

    2014-05-01

    In this paper, the development of a methodology based on semi-empirical models from the literature to carry out 3D prediction of pressure loading on surfaces adjacent to a weapon system during firing is presented. This loading is consequent to the impact of the blast wave generated by the projectile exiting the muzzle bore. When exceeding a pressure threshold level, loading is potentially capable to induce unwanted damage to nearby hard structures as well as frangible panels or electronic equipment. The implemented model shows the ability to quickly predict the distribution of the blast wave parameters over three-dimensional complex geometry surfaces when the weapon design and emplacement data as well as propellant and projectile characteristics are available. Considering these capabilities, the use of the proposed methodology is envisaged as desirable in the preliminary design phase of the combat system to predict adverse effects and then enable to identify the most appropriate countermeasures. By providing a preliminary but sensitive estimate of the operative environmental loading, this numerical means represents a good alternative to more powerful, but time consuming advanced computational fluid dynamics tools, which use can, thus, be limited to the final phase of the design.

  2. Fast simulation of solid tumors thermal ablation treatments with a 3D reaction diffusion model.

    PubMed

    Bertaccini, Daniele; Calvetti, Daniela

    2007-08-01

    An efficient computational method for near real-time simulation of thermal ablation of tumors via radio frequencies is proposed. Model simulations of the temperature field in a 3D portion of tissue containing the tumoral mass for different patterns of source heating can be used to design the ablation procedure. The availability of a very efficient computational scheme makes it possible to update the predicted outcome of the procedure in real time. In the algorithms proposed here a discretization in space of the governing equations is followed by an adaptive time integration based on implicit multistep formulas. A modification of the ode15s MATLAB function which uses Krylov space iterative methods for the solution of the linear systems arising at each integration step makes it possible to perform the simulations on standard desktop for much finer grids than using the built-in ode15s. The proposed algorithm can be applied to a wide class of nonlinear parabolic differential equations. PMID:17173888

  3. FAST SIMULATION OF SOLID TUMORS THERMAL ABLATION TREATMENTS WITH A 3D REACTION DIFFUSION MODEL *

    PubMed Central

    BERTACCINI, DANIELE; CALVETTI, DANIELA

    2007-01-01

    An efficient computational method for near real-time simulation of thermal ablation of tumors via radio frequencies is proposed. Model simulations of the temperature field in a 3D portion of tissue containing the tumoral mass for different patterns of source heating can be used to design the ablation procedure. The availability of a very efficient computational scheme makes it possible update the predicted outcome of the procedure in real time. In the algorithms proposed here a discretization in space of the governing equations is followed by an adaptive time integration based on implicit multistep formulas. A modification of the ode15s MATLAB function which uses Krylov space iterative methods for the solution of for the linear systems arising at each integration step makes it possible to perform the simulations on standard desktop for much finer grids than using the built-in ode15s. The proposed algorithm can be applied to a wide class of nonlinear parabolic differential equations. PMID:17173888

  4. Fast, high-resolution 3D dosimetry utilizing a novel optical-CT scanner incorporating tertiary telecentric collimation.

    PubMed

    Sakhalkar, H S; Oldham, M

    2008-01-01

    This study introduces a charge coupled device (CCD) area detector based optical-computed tomography (optical-CT) scanner for comprehensive verification of radiation dose distributions recorded in nonscattering radiochromic dosimeters. Defining characteristics include: (i) a very fast scanning time of approximately 5 min to acquire a complete three-dimensional (3D) dataset, (ii) improved image formation through the use of custom telecentric optics, which ensures accurate projection images and minimizes artifacts from scattered and stray-light sources, and (iii) high resolution (potentially 50 microm) isotropic 3D dose readout. The performance of the CCD scanner for 3D dose readout was evaluated by comparison with independent 3D readout from the single laser beam OCTOPUS-scanner for the same PRESAGE dosimeters. The OCTOPUS scanner was considered the "gold standard" technique in light of prior studies demonstrating its accuracy. Additional comparisons were made against calculated dose distributions from the ECLIPSE treatment-planning system. Dose readout for the following treatments were investigated: (i) a single rectangular beam irradiation to investigate small field and very steep dose gradient dosimetry away from edge effects, (ii) a 2-field open beam parallel-opposed irradiation to investigate dosimetry along steep dose gradients, and (iii) a 7-field intensity modulated radiation therapy (IMRT) irradiation to investigate dosimetry for complex treatment delivery involving modulation of fluence and for dosimetry along moderate dose gradients. Dose profiles, dose-difference plots, and gamma maps were employed to evaluate quantitative estimates of agreement between independently measured and calculated dose distributions. Results indicated that dose readout from the CCD scanner was in agreement with independent gold-standard readout from the OCTOPUS-scanner as well as the calculated ECLIPSE dose distribution for all treatments, except in regions within a few

  5. NCC-RANSAC: A Fast Plane Extraction Method for 3-D Range Data Segmentation

    PubMed Central

    Qian, Xiangfei; Ye, Cang

    2015-01-01

    This paper presents a new plane extraction (PE) method based on the random sample consensus (RANSAC) approach. The generic RANSAC-based PE algorithm may over-extract a plane, and it may fail in case of a multistep scene where the RANSAC procedure results in multiple inlier patches that form a slant plane straddling the steps. The CC-RANSAC PE algorithm successfully overcomes the latter limitation if the inlier patches are separate. However, it fails if the inlier patches are connected. A typical scenario is a stairway with a stair wall where the RANSAC plane-fitting procedure results in inliers patches in the tread, riser, and stair wall planes. They connect together and form a plane. The proposed method, called normal-coherence CC-RANSAC (NCC-RANSAC), performs a normal coherence check to all data points of the inlier patches and removes the data points whose normal directions are contradictory to that of the fitted plane. This process results in separate inlier patches, each of which is treated as a candidate plane. A recursive plane clustering process is then executed to grow each of the candidate planes until all planes are extracted in their entireties. The RANSAC plane-fitting and the recursive plane clustering processes are repeated until no more planes are found. A probabilistic model is introduced to predict the success probability of the NCC-RANSAC algorithm and validated with real data of a 3-D time-of-flight camera–SwissRanger SR4000. Experimental results demonstrate that the proposed method extracts more accurate planes with less computational time than the existing RANSAC-based methods. PMID:24771605

  6. Fast Numerical Algorithms for 3-D Scattering from PEC and Dielectric Random Rough Surfaces in Microwave Remote Sensing

    NASA Astrophysics Data System (ADS)

    Zhang, Lisha

    We present fast and robust numerical algorithms for 3-D scattering from perfectly electrical conducting (PEC) and dielectric random rough surfaces in microwave remote sensing. The Coifman wavelets or Coiflets are employed to implement Galerkin's procedure in the method of moments (MoM). Due to the high-precision one-point quadrature, the Coiflets yield fast evaluations of the most off-diagonal entries, reducing the matrix fill effort from O(N2) to O( N). The orthogonality and Riesz basis of the Coiflets generate well conditioned impedance matrix, with rapid convergence for the conjugate gradient solver. The resulting impedance matrix is further sparsified by the matrix-formed standard fast wavelet transform (SFWT). By properly selecting multiresolution levels of the total transformation matrix, the solution precision can be enhanced while matrix sparsity and memory consumption have not been noticeably sacrificed. The unified fast scattering algorithm for dielectric random rough surfaces can asymptotically reduce to the PEC case when the loss tangent grows extremely large. Numerical results demonstrate that the reduced PEC model does not suffer from ill-posed problems. Compared with previous publications and laboratory measurements, good agreement is observed.

  7. Fast particles identification in programmable form at level-0 trigger by means of the 3D-Flow system

    SciTech Connect

    Crosetto, Dario B.

    1998-10-30

    The 3D-Flow Processor system is a new, technology-independent concept in very fast, real-time system architectures. Based on either an FPGA or an ASIC implementation, it can address, in a fully programmable manner, applications where commercially available processors would fail because of throughput requirements. Possible applications include filtering-algorithms (pattern recognition) from the input of multiple sensors, as well as moving any input validated by these filtering-algorithms to a single output channel. Both operations can easily be implemented on a 3D-Flow system to achieve a real-time processing system with a very short lag time. This system can be built either with off-the-shelf FPGAs or, for higher data rates, with CMOS chips containing 4 to 16 processors each. The basic building block of the system, a 3D-Flow processor, has been successfully designed in VHDL code written in ''Generic HDL'' (mostly made of reusable blocks that are synthesizable in different technologies, or FPGAs), to produce a netlist for a four-processor ASIC featuring 0.35 micron CBA (Ceil Base Array) technology at 3.3 Volts, 884 mW power dissipation at 60 MHz and 63.75 mm sq. die size. The same VHDL code has been targeted to three FPGA manufacturers (Altera EPF10K250A, ORCA-Lucent Technologies 0R3T165 and Xilinx XCV1000). A complete set of software tools, the 3D-Flow System Manager, equally applicable to ASIC or FPGA implementations, has been produced to provide full system simulation, application development, real-time monitoring, and run-time fault recovery. Today's technology can accommodate 16 processors per chip in a medium size die, at a cost per processor of less than $5 based on the current silicon die/size technology cost.

  8. Suppression law of quantum states in a 3D photonic fast Fourier transform chip.

    PubMed

    Crespi, Andrea; Osellame, Roberto; Ramponi, Roberta; Bentivegna, Marco; Flamini, Fulvio; Spagnolo, Nicolò; Viggianiello, Niko; Innocenti, Luca; Mataloni, Paolo; Sciarrino, Fabio

    2016-01-01

    The identification of phenomena able to pinpoint quantum interference is attracting large interest. Indeed, a generalization of the Hong-Ou-Mandel effect valid for any number of photons and optical modes would represent an important leap ahead both from a fundamental perspective and for practical applications, such as certification of photonic quantum devices, whose computational speedup is expected to depend critically on multi-particle interference. Quantum distinctive features have been predicted for many particles injected into multimode interferometers implementing the Fourier transform over the optical modes. Here we develop a scalable approach for the implementation of the fast Fourier transform algorithm using three-dimensional photonic integrated interferometers, fabricated via femtosecond laser writing technique. We observe the suppression law for a large number of output states with four- and eight-mode optical circuits: the experimental results demonstrate genuine quantum interference between the injected photons, thus offering a powerful tool for diagnostic of photonic platforms. PMID:26843135

  9. Fast spatial beam shaping by acousto-optic diffraction for 3D non-linear microscopy.

    PubMed

    Akemann, Walther; Léger, Jean-François; Ventalon, Cathie; Mathieu, Benjamin; Dieudonné, Stéphane; Bourdieu, Laurent

    2015-11-01

    Acousto-optic deflection (AOD) devices offer unprecedented fast control of the entire spatial structure of light beams, most notably their phase. AOD light modulation of ultra-short laser pulses, however, is not straightforward to implement because of intrinsic chromatic dispersion and non-stationarity of acousto-optic diffraction. While schemes exist to compensate chromatic dispersion, non-stationarity remains an obstacle. In this work we demonstrate an efficient AOD light modulator for stable phase modulation using time-locked generation of frequency-modulated acoustic waves at the full repetition rate of a high power laser pulse amplifier of 80 kHz. We establish the non-local relationship between the optical phase and the generating acoustic frequency function and verify the system for temporal stability, phase accuracy and generation of non-linear two-dimensional phase functions. PMID:26561090

  10. Suppression law of quantum states in a 3D photonic fast Fourier transform chip

    PubMed Central

    Crespi, Andrea; Osellame, Roberto; Ramponi, Roberta; Bentivegna, Marco; Flamini, Fulvio; Spagnolo, Nicolò; Viggianiello, Niko; Innocenti, Luca; Mataloni, Paolo; Sciarrino, Fabio

    2016-01-01

    The identification of phenomena able to pinpoint quantum interference is attracting large interest. Indeed, a generalization of the Hong–Ou–Mandel effect valid for any number of photons and optical modes would represent an important leap ahead both from a fundamental perspective and for practical applications, such as certification of photonic quantum devices, whose computational speedup is expected to depend critically on multi-particle interference. Quantum distinctive features have been predicted for many particles injected into multimode interferometers implementing the Fourier transform over the optical modes. Here we develop a scalable approach for the implementation of the fast Fourier transform algorithm using three-dimensional photonic integrated interferometers, fabricated via femtosecond laser writing technique. We observe the suppression law for a large number of output states with four- and eight-mode optical circuits: the experimental results demonstrate genuine quantum interference between the injected photons, thus offering a powerful tool for diagnostic of photonic platforms. PMID:26843135

  11. LBM-EP: Lattice-Boltzmann method for fast cardiac electrophysiology simulation from 3D images.

    PubMed

    Rapaka, S; Mansi, T; Georgescu, B; Pop, M; Wright, G A; Kamen, A; Comaniciu, Dorin

    2012-01-01

    Current treatments of heart rhythm troubles require careful planning and guidance for optimal outcomes. Computational models of cardiac electrophysiology are being proposed for therapy planning but current approaches are either too simplified or too computationally intensive for patient-specific simulations in clinical practice. This paper presents a novel approach, LBM-EP, to solve any type of mono-domain cardiac electrophysiology models at near real-time that is especially tailored for patient-specific simulations. The domain is discretized on a Cartesian grid with a level-set representation of patient's heart geometry, previously estimated from images automatically. The cell model is calculated node-wise, while the transmembrane potential is diffused using Lattice-Boltzmann method within the domain defined by the level-set. Experiments on synthetic cases, on a data set from CESC'10 and on one patient with myocardium scar showed that LBM-EP provides results comparable to an FEM implementation, while being 10 - 45 times faster. Fast, accurate, scalable and requiring no specific meshing, LBM-EP paves the way to efficient and detailed models of cardiac electrophysiology for therapy planning. PMID:23286029

  12. Field calibration of binocular stereo vision based on fast reconstruction of 3D control field

    NASA Astrophysics Data System (ADS)

    Zhang, Haijun; Liu, Changjie; Fu, Luhua; Guo, Yin

    2015-08-01

    Construction of high-speed railway in China has entered a period of rapid growth. To accurately and quickly obtain the dynamic envelope curve of high-speed vehicle is an important guarantee for safe driving. The measuring system is based on binocular stereo vision. Considering the difficulties in field calibration such as environmental changes and time limits, carried out a field calibration method based on fast reconstruction of three-dimensional control field. With the rapid assembly of pre-calibrated three-dimensional control field, whose coordinate accuracy is guaranteed by manufacture accuracy and calibrated by V-STARS, two cameras take a quick shot of it at the same time. The field calibration parameters are then solved by the method combining linear solution with nonlinear optimization. Experimental results showed that the measurement accuracy can reach up to +/- 0.5mm, and more importantly, in the premise of guaranteeing accuracy, the speed of the calibration and the portability of the devices have been improved considerably.

  13. Comparison of fast 3D simulation and actinic inspection for EUV masks with buries defects

    SciTech Connect

    Clifford, C. H.; Wiraatmadja, S.; Chan, T. T.; Neureuther, A. R.; Goldberg, K. A.; Mochi, I.; Liang, T.

    2009-02-23

    Aerial images for isolated defects and the interactions of defects with features are compared between the Actinic Inspection Tool (AIT) at Lawrence Berkeley National Laboratory (LBNL) and the fast EUV simulation program RADICAL. Comparisons between AIT images from August 2007 and RADICAL simulations are used to extract aberrations. At this time astigmatism was the dominant aberration with a value of 0.55 waves RMS. Significant improvements in the imaging performance of the AIT were made between August 2007 and December 2008. A good match will be shown between the most recent AIT images and RADICAL simulations without aberrations. These comparisons will demonstrate that a large defect, in this case 7nm tall on the surface, is still printable even if it is centered under the absorber line. These comparisons also suggest that the minimum defect size is between 1.5nm and 0.8nm surface height because a 1.5nm defect was printable but a 0.8nm was not. Finally, the image of a buried defect near an absorber line through focus will demonstrate an inversion in the effect of the defect from a protrusion of the dark line into the space to a protrusion of the space into the line.

  14. Automatic segmentation and 3D reconstruction of intravascular ultrasound images for a fast preliminar evaluation of vessel pathologies.

    PubMed

    Sanz-Requena, Roberto; Moratal, David; García-Sánchez, Diego Ramón; Bodí, Vicente; Rieta, José Joaquín; Sanchis, Juan Manuel

    2007-03-01

    Intravascular ultrasound (IVUS) imaging is used along with X-ray coronary angiography to detect vessel pathologies. Manual analysis of IVUS images is slow and time-consuming and it is not feasible for clinical purposes. A semi-automated method is proposed to generate 3D reconstructions from IVUS video sequences, so that a fast diagnose can be easily done, quantifying plaque length and severity as well as plaque volume of the vessels under study. The methodology described in this work has four steps: a pre-processing of IVUS images, a segmentation of media-adventitia contour, a detection of intima and plaque and a 3D reconstruction of the vessel. Preprocessing is intended to remove noise from the images without blurring the edges. Segmentation of media-adventitia contour is achieved using active contours (snakes). In particular, we use the gradient vector flow (GVF) as external force for the snakes. The detection of lumen border is obtained taking into account gray-level information of the inner part of the previously detected contours. A knowledge-based approach is used to determine which level of gray corresponds statistically to the different regions of interest: intima, plaque and lumen. The catheter region is automatically discarded. An estimate of plaque type is also given. Finally, 3D reconstruction of all detected regions is made. The suitability of this methodology has been verified for the analysis and visualization of plaque length, stenosis severity, automatic detection of the most problematic regions, calculus of plaque volumes and a preliminary estimation of plaque type obtaining for automatic measures of lumen and vessel area an average error smaller than 1mm(2) (equivalent aproximately to 10% of the average measure), for calculus of plaque and lumen volume errors smaller than 0.5mm(3) (equivalent approximately to 20% of the average measure) and for plaque type estimates a mismatch of less than 8% in the analysed frames. PMID:17215103

  15. Fast, large field-of-view, telecentric optical-CT scanning system for 3D radiochromic dosimetry

    PubMed Central

    Thomas, A; Oldham, M

    2010-01-01

    We describe initial experiences with an in-house, fast, large field-of-view optical-CT telecentric scanner (the Duke Large field of view Optical-CT Scanner (DLOS)). The DLOS system is designed to enable telecentric optical-CT imaging of dosimeters up to 24 cm in diameter with a spatial resolution of 1 mm3, in approximately 10 minutes. These capabilities render the DLOS system a unique device at present. The system is a scaled up version of early prototypes in our lab. This scaling introduces several challenges, including the accurate measurement of a greatly increased range of light attenuation within the dosimeter, and the need to reduce even minor reflections and scattered light within the imaging chain. We present several corrections and techniques that enable accurate, low noise, 3D dosimetery with the DLOS system. PMID:21218169

  16. Fast, Accurate and Precise Mid-Sagittal Plane Location in 3D MR Images of the Brain

    NASA Astrophysics Data System (ADS)

    Bergo, Felipe P. G.; Falcão, Alexandre X.; Yasuda, Clarissa L.; Ruppert, Guilherme C. S.

    Extraction of the mid-sagittal plane (MSP) is a key step for brain image registration and asymmetry analysis. We present a fast MSP extraction method for 3D MR images, based on automatic segmentation of the brain and on heuristic maximization of the cerebro-spinal fluid within the MSP. The method is robust to severe anatomical asymmetries between the hemispheres, caused by surgical procedures and lesions. The method is also accurate with respect to MSP delineations done by a specialist. The method was evaluated on 64 MR images (36 pathological, 20 healthy, 8 synthetic), and it found a precise and accurate approximation of the MSP in all of them with a mean time of 60.0 seconds per image, mean angular variation within a same image (precision) of 1.26o and mean angular difference from specialist delineations (accuracy) of 1.64o.

  17. Fast and memory-efficient LOGISMOS graph search for intraretinal layer segmentation of 3D macular OCT scans

    NASA Astrophysics Data System (ADS)

    Lee, Kyungmoo; Zhang, Li; Abramoff, Michael D.; Sonka, Milan

    2015-03-01

    Image segmentation is important for quantitative analysis of medical image data. Recently, our research group has introduced a 3-D graph search method which can simultaneously segment optimal interacting surfaces with respect to the cost function in volumetric images. Although it provides excellent segmentation accuracy, it is computationally demanding (both CPU and memory) to simultaneously segment multiple surfaces from large volumetric images. Therefore, we propose a new, fast, and memory-efficient graph search method for intraretinal layer segmentation of 3-D macular optical coherence tomograpy (OCT) scans. The key idea is to reduce the size of a graph by combining the nodes with high costs based on the multiscale approach. The new approach requires significantly less memory and achieves significantly faster processing speeds (p < 0.01) with only small segmentation differences compared to the original graph search method. This paper discusses sub-optimality of this approach and assesses trade-off relationships between decreasing processing speed and increasing segmentation differences from that of the original method as a function of employed scale of the underlying graph construction.

  18. HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.

    PubMed

    Cornilescu, Gabriel; Bahrami, Arash; Tonelli, Marco; Markley, John L; Eghbalnia, Hamid R

    2007-08-01

    We describe a novel method for the robust, rapid, and reliable determination of J couplings in multi-dimensional NMR coupling data, including small couplings from larger proteins. The method, "High-resolution Iterative Frequency Identification of Couplings" (HIFI-C) is an extension of the adaptive and intelligent data collection approach introduced earlier in HIFI-NMR. HIFI-C collects one or more optimally tilted two-dimensional (2D) planes of a 3D experiment, identifies peaks, and determines couplings with high resolution and precision. The HIFI-C approach, demonstrated here for the 3D quantitative J method, offers vital features that advance the goal of rapid and robust collection of NMR coupling data. (1) Tilted plane residual dipolar couplings (RDC) data are collected adaptively in order to offer an intelligent trade off between data collection time and accuracy. (2) Data from independent planes can provide a statistical measure of reliability for each measured coupling. (3) Fast data collection enables measurements in cases where sample stability is a limiting factor (for example in the presence of an orienting medium required for residual dipolar coupling measurements). (4) For samples that are stable, or in experiments involving relatively stronger couplings, robust data collection enables more reliable determinations of couplings in shorter time, particularly for larger biomolecules. As a proof of principle, we have applied the HIFI-C approach to the 3D quantitative J experiment to determine N-C' RDC values for three proteins ranging from 56 to 159 residues (including a homodimer with 111 residues in each subunit). A number of factors influence the robustness and speed of data collection. These factors include the size of the protein, the experimental set up, and the coupling being measured, among others. To exhibit a lower bound on robustness and the potential for time saving, the measurement of dipolar couplings for the N-C' vector represents a realistic

  19. The ATLAS3D project - XIX. The hot gas content of early-type galaxies: fast versus slow rotators

    NASA Astrophysics Data System (ADS)

    Sarzi, Marc; Alatalo, Katherine; Blitz, Leo; Bois, Maxime; Bournaud, Frédéric; Bureau, Martin; Cappellari, Michele; Crocker, Alison; Davies, Roger L.; Davis, Timothy A.; de Zeeuw, P. T.; Duc, Pierre-Alain; Emsellem, Eric; Khochfar, Sadegh; Krajnović, Davor; Kuntschner, Harald; Lablanche, Pierre-Yves; McDermid, Richard M.; Morganti, Raffaella; Naab, Thorsten; Oosterloo, Tom; Scott, Nicholas; Serra, Paolo; Young, Lisa M.; Weijmans, Anne-Marie

    2013-07-01

    For early-type galaxies, the ability to sustain a corona of hot, X-ray-emitting gas could have played a key role in quenching their star formation history. A halo of hot gas may act as an effective shield against the acquisition of cold gas and can quickly absorb stellar mass loss material. Yet, since the discovery by the Einstein Observatory of such X-ray haloes around early-type galaxies, the precise amount of hot gas around these galaxies still remains a matter of debate. By combining homogeneously derived photometric and spectroscopic measurements for the early-type galaxies observed as part of the ATLAS3D integral field survey with measurements of their X-ray luminosity based on X-ray data of both low and high spatial resolution (for 47 and 19 objects, respectively) we conclude that the hot gas content of early-type galaxies can depend on their dynamical structure. Specifically, whereas slow rotators generally have X-ray haloes with luminosity LX, gas and temperature T values that are well in line with what is expected if the hot gas emission is sustained by the thermalization of the kinetic energy carried by the stellar mass loss material, fast rotators tend to display LX, gas values that fall consistently below the prediction of this model, with similar T values that do not scale with the stellar kinetic energy (traced by the stellar velocity dispersion) as observed in the case of slow rotators. Such a discrepancy between the hot gas content of slow and fast rotators would appear to reduce, or even disappear, for large values of the dynamical mass (above ˜3 × 1011 M⊙), with younger fast rotators displaying also somewhat larger LX, gas values possibly owing to the additional energy input from recent supernovae explosions. Considering that fast rotators are likely to be intrinsically flatter than slow rotators, and that the few LX, gas-deficient slow rotators also happen to be relatively flat, the observed LX, gas deficiency in these objects would support

  20. Magnetic reconnection in space

    SciTech Connect

    Boozer, Allen H.

    2012-09-15

    Models of magnetic reconnection in space plasmas generally consider only a segment of the magnetic field lines. The consideration of only a segment of the lines is shown to lead to paradoxical results in which reconnection can be impossible even in a magnetic field constrained to be curl free or can be at an Alfven rate even when the plasma is a perfect conductor. A model of reconnecting magnetic fields is developed which shows the smallness of the interdiffusion distance {delta}{sub d} of magnetic field lines does not limit the speed of reconnection but does provide a reconnection trigger. When the reconnection region has a natural length L{sub r}, the spatial scale of the gradient of magnetic field across the magnetic field lines must reach L{sub g} Almost-Equal-To 0.3L{sub r}/ln(L{sub r}/{delta}{sub d}) for fast reconnection to be triggered, which implies a current density j Almost-Equal-To B/{mu}{sub 0}L{sub g} that is far lower than that usually thought required for fast reconnection. The relation between magnetic reconnection in space and in toroidal laboratory plasmas is also discussed.

  1. Guiding-centre and full-Lorentz orbit solving in 3D magnetic coordinates for fast particle simulations

    NASA Astrophysics Data System (ADS)

    Cooper, Wilfred A.; Pfefferle, David; Graves, Jonathan P.

    2014-10-01

    Designed to accurately solve the motion of energetic particles in the presence of 3D magnetic fields, the VENUS-LEVIS code leans on a non-canonical general coordinate Lagrangian formulation of the equations of motion. It switches between full-orbit particle following and guiding-centre tracing by verifying the perpendicular variation of magnetic vector field, not only including gradients and curvature terms but also the shearing of field-lines. The criteria is particularly relevant for the study of fast ion redistribution in the kinked core of hybrid plasmas, where the compression of flux-surfaces against the axisymmetric outer mantle creates strongly varying magnetic field-lines and large parallel currents. Slowing-down simulations of NBI fast ions show that co-passing particles helically align in the opposite side of the plasma deformation whereas counter-passing particles are barely affected by the kinked structure. Results are compared with experimental neutron camera traces and FIDA measurements during long-lived modes (LLM).

  2. 3D shape and eccentricity measurements of fast rotating rough objects by two mutually tilted interference fringe systems

    NASA Astrophysics Data System (ADS)

    Czarske, J. W.; Kuschmierz, R.; Günther, P.

    2013-06-01

    Precise measurements of distance, eccentricity and 3D-shape of fast moving objects such as turning parts of lathes, gear shafts, magnetic bearings, camshafts, crankshafts and rotors of vacuum pumps are on the one hand important tasks. On the other hand they are big challenges, since contactless precise measurement techniques are required. Optical techniques are well suitable for distance measurements of non-moving surfaces. However, measurements of laterally fast moving surfaces are still challenging. For such tasks the laser Doppler distance sensor technique was invented by the TU Dresden some years ago. This technique has been realized by two mutually tilted interference fringe systems, where the distance is coded in the phase difference between the generated interference signals. However, due to the speckle effect different random envelopes and phase jumps of the interference signals occur. They disturb the phase difference estimation between the interference signals. In this paper, we will report on a scientific breakthrough on the measurement uncertainty budget which has been achieved recently. Via matching of the illumination and receiving optics the measurement uncertainty of the displacement and distance can be reduced by about one magnitude. For displacement measurements of a recurring rough surface a standard deviation of 110 nm were attained at lateral velocities of 5 m / s. Due to the additionally measured lateral velocity and the rotational speed, the two-dimensional shape of rotating objects is calculated. The three-dimensional shape can be conducted by employment of a line camera. Since the measurement uncertainty of the displacement, vibration, distance, eccentricity, and shape is nearly independent of the lateral surface velocity, this technique is predestined for fast-rotating objects. Especially it can be advantageously used for the quality control of workpieces inside of a lathe towards the reduction of process tolerances, installation times and

  3. Strategies for inner volume 3D fast spin echo magnetic resonance imaging using non-selective refocusing radio frequency pulses*

    PubMed Central

    Mitsouras, Dimitris; Mulkern, Robert V.; Rybicki, Frank J.

    2006-01-01

    Fast Spin Echo (FSE) trains elicited by non-selective “hard” refocusing radio frequency (RF) pulses have been proposed as a means to enable application of FSE methods for high resolution 3D magnetic resonance imaging (MRI). Hard-pulse FSE (HPFSE) trains offer short (3–4 ms) echo spacings, but are unfortunately limited to imaging the entire sample within the coil sensitivity thus requiring lengthy imaging times, consequently limiting clinical application. In this work we formulate and analyze two general purpose combinations of 3D HPFSE with Inner Volume (IV) MR imaging to circumvent this limitation. The first method employs a 2D selective RF excitation followed by the HPFSE train, and focuses on required properties of the spatial excitation profile with respect to limiting RF pulse duration in the 5–6 ms range. The second method employs two orthogonally selective 1D RF excitations (a 90x°– 180y° pair) to generate an echo from magnetization within the volume defined by their intersection. Subsequent echoes are formed via the HPFSE train, placing the focus of the method on (a) avoiding spurious echoes that may arise from transverse magnetization located outside the slab intersection when it is unavoidably affected by the non-selective refocusing pulses, and (b) avoiding signal losses due to the necessarily different spacing (in time) of the RF pulse applications. The performance of each method is experimentally measured using Carr-Purcell-Meiboom-Gill (CPMG) multi-echo imaging, enabling examination of the magnetization evolution throughout the echo train. The methods as implemented achieve 95% to 97% outer volume signal suppression, and higher suppression appears to be well within reach, by further refinement of the selective RF excitations. Example images of the human brain and spine are presented with each technique. We conclude that the SNR effciency of volume imaging in conjunction with the short echo spacing afforded by hard pulse trains enable high

  4. Optimized design of a LED-array-based TOF range imaging sensor for fast 3-D shape measurement

    NASA Astrophysics Data System (ADS)

    Wang, Huanqin; Wang, Ying; Xu, Jun; He, Deyong; Zhao, Tianpeng; Ming, Hai; Kong, Deyi

    2011-06-01

    A LED-array-based range imaging sensor using Time-of-Flight (TOF) distance measurement was developed to capture the depth information of three-dimensional (3-D) object. By time-division electronic scanning of the LED heterodyne phase-shift TOF range finders in array, the range images were fast obtained without any mechanical moving parts. The design of LED-array-based range imaging sensor was adequately described and a range imaging theoretical model based on photoelectric signal processing was built, which showed there was mutual restriction relationship among the measurement time of a depth pixel, the bandwidth of receiver and the sensor's signal-to-noise ratio (SNR). In order to improve the key parameters of sensor such as range resolution and measurement speed simultaneously, some optimized designs needed to be done for the proposed range imaging sensor, including choosing proper parameters for the filters in receiver, adopting special structure feedback automatic gain control (AGC) circuit with short response time, etc. The final experiment results showed the sensor after optimization could acquire the range images at a rate of 10 frames per second with a range resolution as high as +/-2mm in the range of 50-1200mm. The essential advantages of the proposed range imaging sensor were construction with simple structure, high range resolution, short measurement time and low cost, which was sufficient for many robotic and industrial automation applications.

  5. Medical applications of fast 3D cameras in real-time image-guided radiotherapy (IGRT) of cancer

    NASA Astrophysics Data System (ADS)

    Li, Shidong; Li, Tuotuo; Geng, Jason

    2013-03-01

    Dynamic volumetric medical imaging (4DMI) has reduced motion artifacts, increased early diagnosis of small mobile tumors, and improved target definition for treatment planning. High speed cameras for video, X-ray, or other forms of sequential imaging allow a live tracking of external or internal movement useful for real-time image-guided radiation therapy (IGRT). However, none of 4DMI can track real-time organ motion and no camera has correlated with 4DMI to show volumetric changes. With a brief review of various IGRT techniques, we propose a fast 3D camera for live-video stereovision, an automatic surface-motion identifier to classify body or respiratory motion, a mechanical model for synchronizing the external surface movement with the internal target displacement by combination use of the real-time stereovision and pre-treatment 4DMI, and dynamic multi-leaf collimation for adaptive aiming the moving target. Our preliminary results demonstrate that the technique is feasible and efficient in IGRT of mobile targets. A clinical trial has been initiated for validation of its spatial and temporal accuracies and dosimetric impact for intensity-modulated RT (IMRT), volumetric-modulated arc therapy (VMAT), and stereotactic body radiotherapy (SBRT) of any mobile tumors. The technique can be extended for surface-guided stereotactic needle insertion in biopsy of small lung nodules.

  6. Comparison of 3-D Modeling With Experimental Results on Fast Wave Antenna Loading in DIII-D

    NASA Astrophysics Data System (ADS)

    Pinsker, R. I.; Ryan, P. M.; Goulding, R. H.; Hanson, G. R.; Milanesio, D.; Maggiora, R.; Hosea, J. C.; Nagy, A.; Porkolab, M.; Zeng, L.

    2011-10-01

    In DIII-D and other tokamaks, with a fixed system voltage limit, the parameter that limits the ICRF power that can be coupled to H-mode plasmas is the antenna loading resistance RL. For a fixed antenna geometry and excitation (phasing), RL is determined by the electron density profile in the antenna near-field region. Quantitative understanding of the coupling physics is obtained by comparing the resistive (RL) and reactive components of the antenna loading, without and with plasma, to predictions of 3-D models of the antenna and the edge plasma (Microwave Studio and TOPICA). When measured density profiles from reflectometers are used, good agreement between predicted and measured values of RL is obtained without any adjustable parameters in the model. The improved understanding is applied to enhancement of RL in advanced scenarios in DIII-D to increase the coupled fast wave power. Supported in part by US DOE under DE-FC02-04ER54698, DE-AC05-00OR22725, DE-AC02-09CH11466, DE-FG02-08ER54984.

  7. Gravity data inversion to determine 3D topographycal density contrast of Banten area, Indonesia based on fast Fourier transform

    NASA Astrophysics Data System (ADS)

    Windhari, Ayuty; Handayani, Gunawan

    2015-04-01

    The 3D inversion gravity anomaly to estimate topographical density using a matlab source code from gridded data provided by Parker Oldenburg algorithm based on fast Fourier transform was computed. We extend and improved the source code of 3DINVERT.M invented by Gomez Ortiz and Agarwal (2005) using the relationship between Fourier transform of the gravity anomaly and the sum of the Fourier transform from the topography density. We gave density contrast between the two media to apply the inversion. FFT routine was implemented to construct amplitude spectrum to the given mean depth. The results were presented as new graphics of inverted topography density, the gravity anomaly due to the inverted topography and the difference between the input gravity data and the computed ones. It terminates when the RMS error is lower than pre-assigned value used as convergence criterion or until maximum of iterations is reached. As an example, we used the matlab program on gravity data of Banten region, Indonesia.

  8. Liver Tumor Segmentation from MR Images Using 3D Fast Marching Algorithm and Single Hidden Layer Feedforward Neural Network

    PubMed Central

    2016-01-01

    Objective. Our objective is to develop a computerized scheme for liver tumor segmentation in MR images. Materials and Methods. Our proposed scheme consists of four main stages. Firstly, the region of interest (ROI) image which contains the liver tumor region in the T1-weighted MR image series was extracted by using seed points. The noise in this ROI image was reduced and the boundaries were enhanced. A 3D fast marching algorithm was applied to generate the initial labeled regions which are considered as teacher regions. A single hidden layer feedforward neural network (SLFN), which was trained by a noniterative algorithm, was employed to classify the unlabeled voxels. Finally, the postprocessing stage was applied to extract and refine the liver tumor boundaries. The liver tumors determined by our scheme were compared with those manually traced by a radiologist, used as the “ground truth.” Results. The study was evaluated on two datasets of 25 tumors from 16 patients. The proposed scheme obtained the mean volumetric overlap error of 27.43% and the mean percentage volume error of 15.73%. The mean of the average surface distance, the root mean square surface distance, and the maximal surface distance were 0.58 mm, 1.20 mm, and 6.29 mm, respectively. PMID:27597960

  9. Liver Tumor Segmentation from MR Images Using 3D Fast Marching Algorithm and Single Hidden Layer Feedforward Neural Network.

    PubMed

    Le, Trong-Ngoc; Bao, Pham The; Huynh, Hieu Trung

    2016-01-01

    Objective. Our objective is to develop a computerized scheme for liver tumor segmentation in MR images. Materials and Methods. Our proposed scheme consists of four main stages. Firstly, the region of interest (ROI) image which contains the liver tumor region in the T1-weighted MR image series was extracted by using seed points. The noise in this ROI image was reduced and the boundaries were enhanced. A 3D fast marching algorithm was applied to generate the initial labeled regions which are considered as teacher regions. A single hidden layer feedforward neural network (SLFN), which was trained by a noniterative algorithm, was employed to classify the unlabeled voxels. Finally, the postprocessing stage was applied to extract and refine the liver tumor boundaries. The liver tumors determined by our scheme were compared with those manually traced by a radiologist, used as the "ground truth." Results. The study was evaluated on two datasets of 25 tumors from 16 patients. The proposed scheme obtained the mean volumetric overlap error of 27.43% and the mean percentage volume error of 15.73%. The mean of the average surface distance, the root mean square surface distance, and the maximal surface distance were 0.58 mm, 1.20 mm, and 6.29 mm, respectively. PMID:27597960

  10. Colorful holographic display of 3D object based on scaled diffraction by using non-uniform fast Fourier transform

    NASA Astrophysics Data System (ADS)

    Chang, Chenliang; Xia, Jun; Lei, Wei

    2015-03-01

    We proposed a new method to calculate the color computer generated hologram of three-dimensional object in holographic display. The three-dimensional object is composed of several tilted planes which are tilted from the hologram. The diffraction from each tilted plane to the hologram plane is calculated based on the coordinate rotation in Fourier spectrum domains. We used the nonuniform fast Fourier transformation (NUFFT) to calculate the nonuniform sampled Fourier spectrum on the tilted plane after coordinate rotation. By using the NUFFT, the diffraction calculation from tilted plane to the hologram plane with variable sampling rates can be achieved, which overcomes the sampling restriction of FFT in the conventional angular spectrum based method. The holograms of red, green and blue component of the polygon-based object are calculated separately by using our NUFFT based method. Then the color hologram is synthesized by placing the red, green and blue component hologram in sequence. The chromatic aberration caused by the wavelength difference can be solved effectively by restricting the sampling rate of the object in the calculation of each wavelength component. The computer simulation shows the feasibility of our method in calculating the color hologram of polygon-based object. The 3D object can be displayed in color with adjustable size and no chromatic aberration in holographic display system, which can be considered as an important application in the colorful holographic three-dimensional display.

  11. Hypocenter relocation using a fast grid search method and a 3-D seismic velocity model for the Sumatra region

    SciTech Connect

    Nugroho, Hendro; Widiyantoro, Sri; Nugraha, Andri Dian

    2013-09-09

    Determination of earthquake hypocenter in Indonesia conducted by the Meteorological, Climatological, and Geophysical Agency (MCGA) has still used a 1-D seismic velocity model. In this research, we have applied a Fast Grid Search (FGM) method and a 3-D velocity model resulting from tomographic imaging to relocate earthquakes in the Sumatran region. The data were taken from the MCGA data catalog from 2009 to 2011 comprising of subduction zone and on land fault earthquakes with magnitude greater than 4 Mw. Our preliminary results show some significant changes in the depths of the relocated earthquakes which are in general deeper than the depths of hypocenters from the MCGA data catalog. The residual times resulting from the relocation process are smaller than those prior to the relocation. Encouraged by these results, we will continue to conduct hypocenter relocation for all events from the MCGA data catalog periodically in order to produce a new data catalog with good quality. We hope that the new data catalog will be useful for further studies.

  12. MO-G-BRF-07: Anomalously Fast Diffusion of Carbon Nanotubes Carriers in 3D Tissue Model

    SciTech Connect

    Wang, Y; Bahng, J; Kotov, N

    2014-06-15

    Purpose: We aim to investigate and understand diffusion process of carbon nanotubes (CNTs) and other nanoscale particles in tissue and organs. Methods: In this research, we utilized a 3D model tissue of hepatocellular carcinoma (HCC)cultured in inverted colloidal crystal (ICC) scaffolds to compare the diffusivity of CNTs with small molecules such as Rhodamine and FITC in vitro, and further investigated the transportation of CNTs with and without targeting ligand, TGFβ1. The real-time permeation profiles of CNTs in HCC tissue model with high temporal and spatial resolution was demonstrated by using standard confocal microscopy. Quantitative analysis of the diffusion process in 3D was carried out using luminescence intensity in a series of Z-stack images obtained for different time points of the diffusion process after initial addition of CNTs or small molecules to the cell culture and the image data was analyzed by software ImageJ and Mathematica. Results: CNTs display diffusion rate in model tissues substantially faster than small molecules of the similar charge such as FITC, and the diffusion rate of CNTs are significantly enhanced with targeting ligand, TGFβ1. Conclusion: In terms of the advantages of in-vitro model, we were able to have access to measuring the rate of CNT penetration at designed conditions with variable parameters. And the findings by using this model, changed our understanding about advantages of CNTs as nanoscale drug carriers and provides design principles for making new drug carriers for both treatment and diagnostics. Additionally the fast diffusion opens the discussion of the best possible drug carriers to reach deep parts of cancerous tissues, which is often a prerequisite for successful cancer treatment. This work was supported by the Center for Photonic and Multiscale Nanomaterials funded by National Science Foundation Materials Research Science and Engineering Center program DMR 1120923. The work was also partially supported by NSF

  13. Nonlinear fast magnetoacoustic wave propagation in the neighbourhood of a 2D magnetic X-point: oscillatory reconnection

    NASA Astrophysics Data System (ADS)

    McLaughlin, J. A.; De Moortel, I.; Hood, A. W.; Brady, C. S.

    2009-01-01

    Context: This paper extends the models of Craig & McClymont (1991, ApJ, 371, L41) and McLaughlin & Hood (2004, A&A, 420, 1129) to include finite β and nonlinear effects. Aims: We investigate the nature of nonlinear fast magnetoacoustic waves about a 2D magnetic X-point. Methods: We solve the compressible and resistive MHD equations using a Lagrangian remap, shock capturing code (Arber et al. 2001, J. Comp. Phys., 171, 151) and consider an initial condition in {v}×{B} \\cdot {hat{z}} (a natural variable of the system). Results: We observe the formation of both fast and slow oblique magnetic shocks. The nonlinear wave deforms the X-point into a “cusp-like” point which in turn collapses to a current sheet. The system then evolves through a series of horizontal and vertical current sheets, with associated changes in connectivity, i.e. the system exhibits oscillatory reconnection. Our final state is non-potential (but in force balance) due to asymmetric heating from the shocks. Larger amplitudes in our initial condition correspond to larger values of the final current density left in the system. Conclusions: The inclusion of nonlinear terms introduces several new features to the system that were absent from the linear regime. A movie is available in electronic form at http://www.aanda.org

  14. Radiative tearing - Magnetic reconnection on a fast thermal-instability time scale

    NASA Technical Reports Server (NTRS)

    Steinolfson, R. S.; Van Hoven, G.

    1984-01-01

    Two energy modification mechanisms which are known to occur in sheared magnetic fields are the tearing and thermal instabilities. These processes can be studied separately with formalisms incorporating just the effective driving mechanism of interest (finite resistivity for the tearing mode and unstable radiation for the thermal mode). A model which includes both effects, and a temperature-dependent resistivity, indicates that modified forms of these two instabilities may coexist for identical physical conditions. When they are isolated computationally, one can show that their limiting growth rates are approximately those of the uncoupled instabilities. The spatial structure and energy content of these two new hybrid processes are then individually examined and are found to differ considerably from those obtained from separate treatments of the driving mechanisms. The faster radiative instability, which has a hydromagnetically scaled growth rate like the condensation mode of the thermal instability, is shown to involve a substantial amount of magnetic field reconnection. This can be partially explained by a large temperature drop (or resistivity rise) at the X-point. The island width of the Coulomb-coupled radiative mode is 30 percent of that produced by a comparable level of the slower tearing instability. In addition, the perturbed magnetic energy in the radiative instability is 5 times that of the perturbed thermal energy, indicating an appreciable modification of the initial magnetic structure.

  15. Gabor-domain optical coherence microscopy with integrated dual-axis MEMS scanner for fast 3D imaging and metrology

    NASA Astrophysics Data System (ADS)

    Canavesi, Cristina; Cogliati, Andrea; Hayes, Adam; Santhanam, Anand P.; Tankam, Patrice; Rolland, Jannick P.

    2015-10-01

    Fast, robust, nondestructive 3D imaging is needed for characterization of microscopic structures in industrial and clinical applications. A custom micro-electromechanical system (MEMS)-based 2D scanner system was developed to achieve 55 kHz A-scan acquisition in a Gabor-domain optical coherence microscopy (GD-OCM) instrument with a novel multilevel GPU architecture for high-speed imaging. GD-OCM yields high-definition volumetric imaging with dynamic depth of focusing through a bio-inspired liquid lens-based microscope design, which has no moving parts and is suitable for use in a manufacturing setting or in a medical environment. A dual-axis MEMS mirror was chosen to replace two single-axis galvanometer mirrors; as a result, the astigmatism caused by the mismatch between the optical pupil and the scanning location was eliminated and a 12x reduction in volume of the scanning system was achieved. Imaging at an invariant resolution of 2 μm was demonstrated throughout a volume of 1 × 1 × 0.6 mm3, acquired in less than 2 minutes. The MEMS-based scanner resulted in improved image quality, increased robustness and lighter weight of the system - all factors that are critical for on-field deployment. A custom integrated feedback system consisting of a laser diode and a position-sensing detector was developed to investigate the impact of the resonant frequency of the MEMS and the driving signal of the scanner on the movement of the mirror. Results on the metrology of manufactured materials and characterization of tissue samples with GD-OCM are presented.

  16. The differential algebra based multiple level fast multipole algorithm for 3D space charge field calculation and photoemission simulation

    SciTech Connect

    None, None

    2015-09-28

    Coulomb interaction between charged particles inside a bunch is one of the most importance collective effects in beam dynamics, becoming even more significant as the energy of the particle beam is lowered to accommodate analytical and low-Z material imaging purposes such as in the time resolved Ultrafast Electron Microscope (UEM) development currently underway at Michigan State University. In addition, space charge effects are the key limiting factor in the development of ultrafast atomic resolution electron imaging and diffraction technologies and are also correlated with an irreversible growth in rms beam emittance due to fluctuating components of the nonlinear electron dynamics. In the short pulse regime used in the UEM, space charge effects also lead to virtual cathode formation in which the negative charge of the electrons emitted at earlier times, combined with the attractive surface field, hinders further emission of particles and causes a degradation of the pulse properties. Space charge and virtual cathode effects and their remediation are core issues for the development of the next generation of high-brightness UEMs. Since the analytical models are only applicable for special cases, numerical simulations, in addition to experiments, are usually necessary to accurately understand the space charge effect. In this paper we will introduce a grid-free differential algebra based multiple level fast multipole algorithm, which calculates the 3D space charge field for n charged particles in arbitrary distribution with an efficiency of O(n), and the implementation of the algorithm to a simulation code for space charge dominated photoemission processes.

  17. The differential algebra based multiple level fast multipole algorithm for 3D space charge field calculation and photoemission simulation

    DOE PAGESBeta

    None, None

    2015-09-28

    Coulomb interaction between charged particles inside a bunch is one of the most importance collective effects in beam dynamics, becoming even more significant as the energy of the particle beam is lowered to accommodate analytical and low-Z material imaging purposes such as in the time resolved Ultrafast Electron Microscope (UEM) development currently underway at Michigan State University. In addition, space charge effects are the key limiting factor in the development of ultrafast atomic resolution electron imaging and diffraction technologies and are also correlated with an irreversible growth in rms beam emittance due to fluctuating components of the nonlinear electron dynamics.more » In the short pulse regime used in the UEM, space charge effects also lead to virtual cathode formation in which the negative charge of the electrons emitted at earlier times, combined with the attractive surface field, hinders further emission of particles and causes a degradation of the pulse properties. Space charge and virtual cathode effects and their remediation are core issues for the development of the next generation of high-brightness UEMs. Since the analytical models are only applicable for special cases, numerical simulations, in addition to experiments, are usually necessary to accurately understand the space charge effect. In this paper we will introduce a grid-free differential algebra based multiple level fast multipole algorithm, which calculates the 3D space charge field for n charged particles in arbitrary distribution with an efficiency of O(n), and the implementation of the algorithm to a simulation code for space charge dominated photoemission processes.« less

  18. Experimental Investigation of the Trigger Problem in Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Egedal, Jan

    2012-07-01

    Magnetic reconnection releases magnetic energy not only in steady-state, but also in time-dependent and often explosive events requiring a transition from slow reconnection to fast. The question of what causes this transition is known as the ``trigger problem'' and is not well understood. We address the trigger problem using the Versatile Toroidal Facility (VTF) at MIT. We observe spontaneous reconnection events [1] with exponentially growing reconnection rates, and we characterize the 3D dynamics of these events using multiple internal probes. The observed reconnection is asymmetric: it begins at one toroidal location and propagates around in both directions. The spontaneous onset is facilitated by an interaction between the x-line current channel and a global mode in the electrostatic potential. It is this mode which breaks axisymmetry and enables a localized decrease in x-line current. We model the onset using an empirical Ohm's law and current continuity, which is maintained by ion polarization currents associated with the mode. The model reproduces the exponential growth of the reconnection electric field, and the model growth rate agrees well with the experimentally measured growth rate. The onset location is likely determined by small asymmetries in the in-vessel coils. To further investigate this conjecture new coils have been installed, which allow for controlled changes in toroidal asymmetry. The observations are suggestive of solar flare dynamics and are relevant to tokamak research [3]. [1] Egedal, J. et al. Laboratory Observations of Spontaneous Magnetic Reconnection. Phys. Rev. Lett. 98, 015003 (2007). [2] Katz, N. et al. Laboratory Observation of Localized Onset of Magnetic Reconnection. Phys. Rev. Lett. 104, 255004 (2010). [3] Park, H.K. et al. Self-organized Te redistribution during driven reconnection processes in high-temperature plasmas. Phys. Plasmas 13, 055907 (2006).

  19. MO-G-17A-03: MR-Based Cortical Bone Segmentation for PET Attenuation Correction with a Non-UTE 3D Fast GRE Sequence

    SciTech Connect

    Ai, H; Pan, T; Hwang, K

    2014-06-15

    Purpose: To determine the feasibility of identifying cortical bone on MR images with a short-TE 3D fast-GRE sequence for attenuation correction of PET data in PET/MR. Methods: A water-fat-bone phantom was constructed with two pieces of beef shank. MR scans were performed on a 3T MR scanner (GE Discovery™ MR750). A 3D GRE sequence was first employed to measure the level of residual signal in cortical bone (TE{sub 1}/TE{sub 2}/TE{sub 3}=2.2/4.4/6.6ms, TR=20ms, flip angle=25°). For cortical bone segmentation, a 3D fast-GRE sequence (TE/TR=0.7/1.9ms, acquisition voxel size=2.5×2.5×3mm{sup 3}) was implemented along with a 3D Dixon sequence (TE{sub 1}/TE{sub 2}/TR=1.2/2.3/4.0ms, acquisition voxel size=1.25×1.25×3mm{sup 3}) for water/fat imaging. Flip angle (10°), acquisition bandwidth (250kHz), FOV (480×480×144mm{sup 3}) and reconstructed voxel size (0.94×0.94×1.5mm{sup 3}) were kept the same for both sequences. Soft tissue and fat tissue were first segmented on the reconstructed water/fat image. A tissue mask was created by combining the segmented water/fat masks, which was then applied on the fast-GRE image (MRFGRE). A second mask was created to remove the Gibbs artifacts present in regions in close vicinity to the phantom. MRFGRE data was smoothed with a 3D anisotropic diffusion filter for noise reduction, after which cortical bone and air was separated using a threshold determined from the histogram. Results: There is signal in the cortical bone region in the 3D GRE images, indicating the possibility of separating cortical bone and air based on signal intensity from short-TE MR image. The acquisition time for the 3D fast-GRE sequence was 17s, which can be reduced to less than 10s with parallel imaging. The attenuation image created from water-fat-bone segmentation is visually similar compared to reference CT. Conclusion: Cortical bone and air can be separated based on intensity in MR image with a short-TE 3D fast-GRE sequence. Further research is required

  20. The polyGeVero® software for fast and easy computation of 3D radiotherapy dosimetry data

    NASA Astrophysics Data System (ADS)

    Kozicki, Marek; Maras, Piotr

    2015-01-01

    The polyGeVero® software package was elaborated for calculations of 3D dosimetry data such as the polymer gel dosimetry. It comprises four workspaces designed for: i) calculating calibrations, ii) storing calibrations in a database, iii) calculating dose distribution 3D cubes, iv) comparing two datasets e.g. a measured one with a 3D dosimetry with a calculated one with the aid of a treatment planning system. To accomplish calculations the software was equipped with a number of tools such as the brachytherapy isotopes database, brachytherapy dose versus distance calculation based on the line approximation approach, automatic spatial alignment of two 3D dose cubes for comparison purposes, 3D gamma index, 3D gamma angle, 3D dose difference, Pearson's coefficient, histograms calculations, isodoses superimposition for two datasets, and profiles calculations in any desired direction. This communication is to briefly present the main functions of the software and report on the speed of calculations performed by polyGeVero®.

  1. 3D multiple optical tweezers based on time-shared scanning with a fast focus tunable lens

    NASA Astrophysics Data System (ADS)

    Tanaka, Yoshio

    2013-02-01

    Three-dimensional controlled manipulation of individual micro-objects requires multiple optical tweezers that can be independently controlled in a 3D working space with high spatiotemporal resolution. Here, the author presents 3D multiple optical tweezers based on a time-shared scanning technique with an electrically focus tunable lens for axial steering and a two-axis steering mirror for lateral steering. Four typical examples of 3D controlled manipulation, including the rotation of a single bead on its axis, are demonstrated in real time. The optical system design and the control method are also described.

  2. Fast and background-free three-dimensional (3D) live-cell imaging with lanthanide-doped upconverting nanoparticles

    NASA Astrophysics Data System (ADS)

    Jo, Hong Li; Song, Yo Han; Park, Jinho; Jo, Eun-Jung; Goh, Yeongchang; Shin, Kyujin; Kim, Min-Gon; Lee, Kang Taek

    2015-11-01

    We report on the development of a three-dimensional (3D) live-cell imaging technique with high spatiotemporal resolution using lanthanide-doped upconverting nanoparticles (UCNPs). It employs the sectioning capability of confocal microscopy except that the two-dimensional (2D) section images are acquired by wide-field epi-fluorescence microscopy. Although epi-fluorescence images are contaminated with the out-of-focus background in general, the near-infrared (NIR) excitation used for the excitation of UCNPs does not generate any autofluorescence, which helps to lower the background. Moreover, the image blurring due to defocusing was naturally eliminated in the image reconstruction process. The 3D images were used to investigate the cellular dynamics such as nuclear uptake and single-particle tracking that require 3D description.We report on the development of a three-dimensional (3D) live-cell imaging technique with high spatiotemporal resolution using lanthanide-doped upconverting nanoparticles (UCNPs). It employs the sectioning capability of confocal microscopy except that the two-dimensional (2D) section images are acquired by wide-field epi-fluorescence microscopy. Although epi-fluorescence images are contaminated with the out-of-focus background in general, the near-infrared (NIR) excitation used for the excitation of UCNPs does not generate any autofluorescence, which helps to lower the background. Moreover, the image blurring due to defocusing was naturally eliminated in the image reconstruction process. The 3D images were used to investigate the cellular dynamics such as nuclear uptake and single-particle tracking that require 3D description. Electronic supplementary information (ESI) available: Methods for synthetic procedure, characterization, live-cell imaging with UCNPs, and two video files for 3D imaging. See DOI: 10.1039/c5nr05875a

  3. 3D Ion Temperature Reconstruction

    NASA Astrophysics Data System (ADS)

    Tanabe, Hiroshi; You, Setthivoine; Balandin, Alexander; Inomoto, Michiaki; Ono, Yasushi

    2009-11-01

    The TS-4 experiment at the University of Tokyo collides two spheromaks to form a single high-beta compact toroid. Magnetic reconnection during the merging process heats and accelerates the plasma in toroidal and poloidal directions. The reconnection region has a complex 3D topology determined by the pitch of the spheromak magnetic fields at the merging plane. A pair of multichord passive spectroscopic diagnostics have been established to measure the ion temperature and velocity in the reconnection volume. One setup measures spectral lines across a poloidal plane, retrieving velocity and temperature from Abel inversion. The other, novel setup records spectral lines across another section of the plasma and reconstructs velocity and temperature from 3D vector and 2D scalar tomography techniques. The magnetic field linking both measurement planes is determined from in situ magnetic probe arrays. The ion temperature is then estimated within the volume between the two measurement planes and at the reconnection region. The measurement is followed over several repeatable discharges to follow the heating and acceleration process during the merging reconnection.

  4. Remote z-scanning with a macroscopic voice coil motor for fast 3D multiphoton laser scanning microscopy

    PubMed Central

    Rupprecht, Peter; Prendergast, Andrew; Wyart, Claire; Friedrich, Rainer W

    2016-01-01

    There is a high demand for 3D multiphoton imaging in neuroscience and other fields but scanning in axial direction presents technical challenges. We developed a focusing technique based on a remote movable mirror that is conjugate to the specimen plane and translated by a voice coil motor. We constructed cost-effective z-scanning modules from off-the-shelf components that can be mounted onto standard multiphoton laser scanning microscopes to extend scan patterns from 2D to 3D. Systems were designed for large objectives and provide high resolution, high speed and a large z-scan range (>300 μm). We used these systems for 3D multiphoton calcium imaging in the adult zebrafish brain and measured odor-evoked activity patterns across >1500 neurons with single-neuron resolution and high signal-to-noise ratio. PMID:27231612

  5. Remote z-scanning with a macroscopic voice coil motor for fast 3D multiphoton laser scanning microscopy.

    PubMed

    Rupprecht, Peter; Prendergast, Andrew; Wyart, Claire; Friedrich, Rainer W

    2016-05-01

    There is a high demand for 3D multiphoton imaging in neuroscience and other fields but scanning in axial direction presents technical challenges. We developed a focusing technique based on a remote movable mirror that is conjugate to the specimen plane and translated by a voice coil motor. We constructed cost-effective z-scanning modules from off-the-shelf components that can be mounted onto standard multiphoton laser scanning microscopes to extend scan patterns from 2D to 3D. Systems were designed for large objectives and provide high resolution, high speed and a large z-scan range (>300 μm). We used these systems for 3D multiphoton calcium imaging in the adult zebrafish brain and measured odor-evoked activity patterns across >1500 neurons with single-neuron resolution and high signal-to-noise ratio. PMID:27231612

  6. Development and anlysis of fast, approximate 3D Algorithms for interpretation of multi-component induction logging data

    SciTech Connect

    David L. Alumbaugh

    2006-07-03

    This report addresses the effects of electrical anisotropy on the 3D inversion of single-well induction logging data when anisotropy is not considered. Of concern are possible artifacts that may lead to an incorrect interpretation of the formation about the borehole. Comparison is made of 3D isotropic inversion on a suite of model data, with and without anisotropy, consisting of an infinite layer and layer terminated at the borehole. In both cases, the layer dip (or well deviation) is varied. Inversion of the anisotropic data result in an overestimate of the layer conductivity, and the lateral extent of the layer about the borehole.

  7. A fast vectorized multispin coding algorithm for 3D Monte Carlo simulations using Kawasaki spin-exchange dynamics

    NASA Astrophysics Data System (ADS)

    Zhang, M. Q.

    1989-09-01

    A new Monte Carlo algorithm for 3D Kawasaki spin-exchange simulations and its implementation on a CDC CYBER 205 is presented. This approach is applicable to lattices with sizes between 4×4×4 and 256×L2×L3 ((L2+2)(L3+4)/4⩽65535) and periodic boundary conditions. It is adjustable to various kinetic models in which the total magnetization is conserved. Maximum speed on 10 million steps per second can be reached for 3-D Ising model with Metropolis rate.

  8. Fast optical 3D form measurement of aspheres including determination of thickness and wedge and decenter errors

    NASA Astrophysics Data System (ADS)

    Stover, E.; Berger, G.; Wendel, M.; Petter, J.

    2015-10-01

    A method for non-contact 3D form testing of aspheric surfaces including determination of decenter and wedge errors and lens thickness is presented. The principle is based on the absolute measurement capability of multi-wavelength interferometry (MWLI). The approach produces high density 3D shape information and geometric parameters at high accuracy in short measurement times. The system allows inspection of aspheres without restrictions in terms of spherical departures, of segmented and discontinuous optics. The optics can be polished or ground and made of opaque or transparent materials.

  9. VIRO 3D: fast three-dimensional full-body scanning for humans and other living objects

    NASA Astrophysics Data System (ADS)

    Stein, Norbert; Minge, Bernhard

    1998-03-01

    The development of a family of partial and whole body scanners provides a complete technology for fully three-dimensional and contact-free scans on human bodies or other living objects within seconds. This paper gives insight into the design and the functional principles of the whole body scanner VIRO 3D operating on the basis of the laser split-beam method. The arrangement of up to 24 camera/laser combinations, thus dividing the area into different camera fields and an all- around sensor configuration travelling in vertical direction allow the complete 360-degree-scan of an object within 6 - 20 seconds. Due to a special calibration process the different sensors are matched and the measured data are combined. Up to 10 million 3D measuring points with a resolution of approximately 1 mm are processed in all coordinate axes to generate a 3D model. By means of high-performance processors in combination with real-time image processing chips the image data from almost any number of sensors can be recorded and evaluated synchronously in video real-time. VIRO 3D scanning systems have already been successfully implemented in various applications and will open up new perspectives in different other fields, ranging from industry, orthopaedic medicine, plastic surgery to art and photography.

  10. 3D in the Fast Lane: Render as You Go with the Latest OpenGL Boards.

    ERIC Educational Resources Information Center

    Sauer, Jeff; Murphy, Sam

    1997-01-01

    NT OpenGL hardware allows modelers and animators to work at relatively inexpensive NT workstations in their own offices or homes previous to shared space and workstation time in expensive studios. Rates seven OpenGL boards and two QuickDraw 3D accelerator boards for Mac users on overall value, wireframe and texture rendering, 2D acceleration, and…

  11. On FAST3D simulations of directly-driven inertial-fusion targets with high-Z layers for reducing laser imprint and surface non-uniformity growth

    NASA Astrophysics Data System (ADS)

    Bates, Jason; Schmitt, Andrew; Klapisch, Marcel; Karasik, Max; Obenschain, Steve

    2013-10-01

    Modifications to the FAST3D code have been made to enhance its ability to simulate the dynamics of plastic ICF targets with high-Z overcoats. This class of problems is challenging computationally due in part to plasma conditions that are not in a state of local thermodynamic equilibrium and to the presence of mixed computational cells containing more than one material. Recently, new opacity tables for gold, palladium and plastic have been generated with an improved version of the STA code. These improved tables provide smoother, higher-fidelity opacity data over a wider range of temperature and density states than before, and contribute to a more accurate treatment of radiative transfer processes in FAST3D simulations. Furthermore, a new, more efficient subroutine known as ``MMEOS'' has been installed in the FAST3D code for determining pressure and temperature equilibrium conditions within cells containing multiple materials. We will discuss these topics, and present new simulation results for high-Z planar-target experiments performed recently on the NIKE Laser Facility. Work supported by DOE/NNSA.

  12. 3D pyCloudy modelling of bipolar planetary nebulae: Evidence for fast fading of the lobes

    NASA Astrophysics Data System (ADS)

    Gesicki, K.; Zijlstra, A. A.; Morisset, C.

    2016-01-01

    Aims: The origin and evolution of the shapes of bipolar planetary nebulae are poorly understood. We postulate that their history can be traced through their internal velocity fields in a procedure similar to the one well established for spherical objects. Such an analysis requires 3D photoionization and kinematical modelling that is computationally very time consuming. We apply an axially symmetric pseudo-3D photoionization model, pyCloudy, to derive the structures of six bipolar nebulae and two suggested post-bipolars in an attempt to constrain the bipolar planetary nebulae evolution. Methods: HST images and VLT/UVES spectroscopy are used for the modelling. The targets are located in the direction of the Galactic bulge. A 3D model structure is used as input to the photoionization code in order to fit the HST images. Line profiles of different ions constrain the velocity field. The model and associated velocity fields allow us to derive masses, velocities, and ages. Results: The 3D models find much lower ionized masses than required in 1D models: ionized masses are reduced by factors of 2-7. The selected bi-lobed planetary nebulae show a narrow range of ages: the averaged radii and velocities result in values between 1300 and 2000 yr. The lobes are fitted well with velocities that increase linearly with radius. These Hubble-type flows have been found before, and suggest that the lobes form at a defined point in time. The lobes appear to be slightly younger, by ~500 yr, than the main (host) nebulae; they seem to form at an early phase of PN evolution and fade after 1-2 kyr. We find that 30-35% of bulge PNe pass through a bipolar phase. Based on observations collected at the European Organisation for Astronomical Research in the Southern Hemisphere, Chile (proposal 075.D-0104) and HST (program 9356).

  13. Simulating Magnetotail Reconnection in the Presence of a Significant Guide Field

    NASA Astrophysics Data System (ADS)

    Ashour-Abdalla, Maha; Lapenta, Giovanni; Walker, Raymond; El-Alaoui, Mostafa; Liang, Haoming; Zhou, Meng; Berchem, Jean; Goldstein, Melvyn

    2016-04-01

    For a large number of solar wind driven substorms a significant guide field is present in the magnetotail. We have developed a new simulation approach for magnetotail reconnection in which we combine results from global magnetohydrodynamic simulations of the solar wind, magnetosphere and ionosphere system with large-scale 3D particle-in-cell simulations of the magnetotail. In this approach we first run a global MHD simulation driven by upstream solar wind observations. Then we use the results from the MHD simulation to set the initial and boundary conditions of a large-scale PIC simulation. We have selected the iPIC3D kinetic code to go along with the UCLA global simulation model. Our approach allows us to investigate indicators of reconnection in a realistic magnetospheric configuration, which is essential to determine the dynamics of the substorm process, in particular the evolution of reconnection and dipolarization fronts. In preparation for the MMS phase in the magnetotail, we have developed an analysis system with multiprobes so we can directly compare the simulation results with MMS observations and have applied our multiscale simulation approach to the solar wind driven substorm observed on March 1, 2008. This substorm was characterized by a significant guide field. In the PIC simulation fast but episodic reconnection is found in the near-Earth tail. The reconnection has a complex 3D structure. When normalized by the Alfvén speed and magnetic field magnitude, the reconnection rate although highly variable oscillates about the expected value of 0.1. The location of reconnection also is highly variable. In the simulation it moves several RE across the tail in less than two minutes. We have evaluated several indicators of reconnection and find that agyrotropy (or non-gyrotropy) is the most reliable indicator.

  14. Fast multi-core based multimodal registration of 2D cross-sections and 3D datasets

    PubMed Central

    2010-01-01

    Background Solving bioinformatics tasks often requires extensive computational power. Recent trends in processor architecture combine multiple cores into a single chip to improve overall performance. The Cell Broadband Engine (CBE), a heterogeneous multi-core processor, provides power-efficient and cost-effective high-performance computing. One application area is image analysis and visualisation, in particular registration of 2D cross-sections into 3D image datasets. Such techniques can be used to put different image modalities into spatial correspondence, for example, 2D images of histological cuts into morphological 3D frameworks. Results We evaluate the CBE-driven PlayStation 3 as a high performance, cost-effective computing platform by adapting a multimodal alignment procedure to several characteristic hardware properties. The optimisations are based on partitioning, vectorisation, branch reducing and loop unrolling techniques with special attention to 32-bit multiplies and limited local storage on the computing units. We show how a typical image analysis and visualisation problem, the multimodal registration of 2D cross-sections and 3D datasets, benefits from the multi-core based implementation of the alignment algorithm. We discuss several CBE-based optimisation methods and compare our results to standard solutions. More information and the source code are available from http://cbe.ipk-gatersleben.de. Conclusions The results demonstrate that the CBE processor in a PlayStation 3 accelerates computational intensive multimodal registration, which is of great importance in biological/medical image processing. The PlayStation 3 as a low cost CBE-based platform offers an efficient option to conventional hardware to solve computational problems in image processing and bioinformatics. PMID:20064262

  15. Fast Simulation of 3-D Surface Flanging and Prediction of the Flanging Lines Based On One-Step Inverse Forming Algorithm

    SciTech Connect

    Bao Yidong; Hu Sibo; Lang Zhikui; Hu Ping

    2005-08-05

    A fast simulation scheme for 3D curved binder flanging and blank shape prediction of sheet metal based on one-step inverse finite element method is proposed, in which the total plasticity theory and proportional loading assumption are used. The scheme can be actually used to simulate 3D flanging with complex curve binder shape, and suitable for simulating any type of flanging model by numerically determining the flanging height and flanging lines. Compared with other methods such as analytic algorithm and blank sheet-cut return method, the prominent advantage of the present scheme is that it can directly predict the location of the 3D flanging lines when simulating the flanging process. Therefore, the prediction time of flanging lines will be obviously decreased. Two typical 3D curve binder flanging including stretch and shrink characters are simulated in the same time by using the present scheme and incremental FE non-inverse algorithm based on incremental plasticity theory, which show the validity and high efficiency of the present scheme.

  16. Fast and accurate global multiphase arrival tracking: the irregular shortest-path method in a 3-D spherical earth model

    NASA Astrophysics Data System (ADS)

    Huang, Guo-Jiao; Bai, Chao-Ying; Greenhalgh, Stewart

    2013-09-01

    The traditional grid/cell-based wavefront expansion algorithms, such as the shortest path algorithm, can only find the first arrivals or multiply reflected (or mode converted) waves transmitted from subsurface interfaces, but cannot calculate the other later reflections/conversions having a minimax time path. In order to overcome the above limitations, we introduce the concept of a stationary minimax time path of Fermat's Principle into the multistage irregular shortest path method. Here we extend it from Cartesian coordinates for a flat earth model to global ray tracing of multiple phases in a 3-D complex spherical earth model. The ray tracing results for 49 different kinds of crustal, mantle and core phases show that the maximum absolute traveltime error is less than 0.12 s and the average absolute traveltime error is within 0.09 s when compared with the AK135 theoretical traveltime tables for a 1-D reference model. Numerical tests in terms of computational accuracy and CPU time consumption indicate that the new scheme is an accurate, efficient and a practical way to perform 3-D multiphase arrival tracking in regional or global traveltime tomography.

  17. Magnetic reconnection: from the Sweet–Parker model to stochastic plasmoid chains

    NASA Astrophysics Data System (ADS)

    Loureiro, N. F.; Uzdensky, D. A.

    2016-01-01

    Magnetic reconnection is the topological reconfiguration of the magnetic field in a plasma, accompanied by the violent release of energy and particle acceleration. Reconnection is as ubiquitous as plasmas themselves, with solar flares perhaps the most popular example. Other fascinating processes where reconnection plays a key role include the magnetic dynamo, geomagnetic storms and the sawtooth crash in tokamaks. Over the last few years, the theoretical understanding of magnetic reconnection in large-scale fluid systems has undergone a major paradigm shift. The steady-state model of reconnection described by the famous Sweet–Parker (SP) theory, which dominated the field for  ∼50 years, has been replaced with an essentially time-dependent, bursty picture of the reconnection layer, dominated by the continuous formation and ejection of multiple secondary islands (plasmoids). Whereas in the SP model reconnection was predicted to be slow, a major implication of this new paradigm is that reconnection in fluid systems is fast (i.e. independent of the Lundquist number), provided that the system is large enough. This conceptual shift hinges on the realization that SP-like current layers are violently unstable to the plasmoid (tearing) instability—implying, therefore, that such current sheets are super-critically unstable and thus can never form in the first place. This suggests that the formation of a current sheet and the subsequent reconnection process cannot be decoupled, as is commonly assumed. This paper provides an introductory-level overview of the recent developments in reconnection theory and simulations that led to this essentially new framework. We briefly discuss the role played by the plasmoid instability in selected applications, and describe some of the outstanding challenges that remain at the frontier of this subject. Amongst these are the analytical and numerical extension of the plasmoid instability to (i) 3D and (ii) non

  18. Fluxon Modeling of Eruptive Events With and Without Reconnection

    NASA Astrophysics Data System (ADS)

    DeForest, Craig; Rachmeler, L.; Davey, A.; Kankelborg, C.

    2007-05-01

    Fluxon MHD models represent the coronal magnetic field as a "skeleton" of discretized field lines. This quasi-Lagrangian approach eliminates numerical resistivity and allows 3-D time-dependent plasma simulation in a desktop workstation.Using our fluxon code, FLUX, we have demonstrated that ideal MHD instabilities can drive fast eruptive events even in the complete absence of magnetic reconnection. The mechanism ("herniation") is probably not the main driver of fast CMEs but may be applicable to microjets, macrospicules, or other small scale events where vortical flows are present in the solar atmosphere. In this presentation, we use time-dependent simulations to demonstrate energy release in several idealized plasma systems with and without magnetic reconnection.This work was funded by NASA's LWS and SHP-SR&T programs.

  19. The ATLAS3D project - VIII. Modelling the formation and evolution of fast and slow rotator early-type galaxies within ΛCDM

    NASA Astrophysics Data System (ADS)

    Khochfar, Sadegh; Emsellem, Eric; Serra, Paolo; Bois, Maxime; Alatalo, Katherine; Bacon, R.; Blitz, Leo; Bournaud, Frédéric; Bureau, M.; Cappellari, Michele; Davies, Roger L.; Davis, Timothy A.; de Zeeuw, P. T.; Duc, Pierre-Alain; Krajnović, Davor; Kuntschner, Harald; Lablanche, Pierre-Yves; McDermid, Richard M.; Morganti, Raffaella; Naab, Thorsten; Oosterloo, Tom; Sarzi, Marc; Scott, Nicholas; Weijmans, Anne-Marie; Young, Lisa M.

    2011-10-01

    We propose a simple model for the origin of fast and slow rotator early-type galaxies (ETG) within the hierarchical Λcold dark matter (ΛCDM) scenario, that is based on the assumption that the mass fraction of stellar discs in ETGs is a proxy for the specific angular momentum expressed via λR. Within our model we reproduce the fraction of fast and slow rotators as a function of magnitude in the ATLAS3D survey, assuming that fast-rotating ETGs have at least 10 per cent of their total stellar mass in a disc component. In agreement with ATLAS3D observations we find that slow rotators are predominantly galaxies with M* > 1010.5 M⊙ contributing ˜20 per cent to the overall ETG population. We show in detail that the growth histories of fast and slow rotators are different, supporting the classification of ETGs into these two categories. Slow rotators accrete between ˜50 and 90 per cent of their stellar mass from satellites and their most massive progenitors have on average up to three major mergers during their evolution. Fast rotators in contrast accrete less than 50 per cent and have on average less than one major merger in their past. We find that the underlying physical reason for the different growth histories is the slowing down and ultimately complete shut-down of gas cooling in massive galaxies. Once cooling and associated star formation in disc stop, galaxies grow via infall from satellites. Frequent minor mergers thereby destroy existing stellar discs via violent relaxation and also tend to lower the specific angular momentum of the main stellar body, lowering λR into the slow rotator regime. On average, the last gas-rich major merger interaction in slow rotators happens at z > 1.5, followed by a series of minor mergers. These results support the idea that kinematically decoupled cores (KDC) form during gas-rich major mergers at high z followed by minor mergers, which build-up the outer layers of the remnant, and make remnants that are initially too flat

  20. Development of fast patient position verification software using 2D-3D image registration and its clinical experience.

    PubMed

    Mori, Shinichiro; Kumagai, Motoki; Miki, Kentaro; Fukuhara, Riki; Haneishi, Hideaki

    2015-09-01

    To improve treatment workflow, we developed a graphic processing unit (GPU)-based patient positional verification software application and integrated it into carbon-ion scanning beam treatment. Here, we evaluated the basic performance of the software. The algorithm provides 2D/3D registration matching using CT and orthogonal X-ray flat panel detector (FPD) images. The participants were 53 patients with tumors of the head and neck, prostate or lung receiving carbon-ion beam treatment. 2D/3D-ITchi-Gime (ITG) calculation accuracy was evaluated in terms of computation time and registration accuracy. Registration calculation was determined using the similarity measurement metrics gradient difference (GD), normalized mutual information (NMI), zero-mean normalized cross-correlation (ZNCC), and their combination. Registration accuracy was dependent on the particular metric used. Representative examples were determined to have target registration error (TRE) = 0.45 ± 0.23 mm and angular error (AE) = 0.35 ± 0.18° with ZNCC + GD for a head and neck tumor; TRE = 0.12 ± 0.07 mm and AE = 0.16 ± 0.07° with ZNCC for a pelvic tumor; and TRE = 1.19 ± 0.78 mm and AE = 0.83 ± 0.61° with ZNCC for lung tumor. Calculation time was less than 7.26 s.The new registration software has been successfully installed and implemented in our treatment process. We expect that it will improve both treatment workflow and treatment accuracy. PMID:26081313

  1. Development of fast patient position verification software using 2D-3D image registration and its clinical experience

    PubMed Central

    Mori, Shinichiro; Kumagai, Motoki; Miki, Kentaro; Fukuhara, Riki; Haneishi, Hideaki

    2015-01-01

    To improve treatment workflow, we developed a graphic processing unit (GPU)-based patient positional verification software application and integrated it into carbon-ion scanning beam treatment. Here, we evaluated the basic performance of the software. The algorithm provides 2D/3D registration matching using CT and orthogonal X-ray flat panel detector (FPD) images. The participants were 53 patients with tumors of the head and neck, prostate or lung receiving carbon-ion beam treatment. 2D/3D-ITchi-Gime (ITG) calculation accuracy was evaluated in terms of computation time and registration accuracy. Registration calculation was determined using the similarity measurement metrics gradient difference (GD), normalized mutual information (NMI), zero-mean normalized cross-correlation (ZNCC), and their combination. Registration accuracy was dependent on the particular metric used. Representative examples were determined to have target registration error (TRE) = 0.45 ± 0.23 mm and angular error (AE) = 0.35 ± 0.18° with ZNCC + GD for a head and neck tumor; TRE = 0.12 ± 0.07 mm and AE = 0.16 ± 0.07° with ZNCC for a pelvic tumor; and TRE = 1.19 ± 0.78 mm and AE = 0.83 ± 0.61° with ZNCC for lung tumor. Calculation time was less than 7.26 s.The new registration software has been successfully installed and implemented in our treatment process. We expect that it will improve both treatment workflow and treatment accuracy. PMID:26081313

  2. FAST MAGNETIC RECONNECTION AND PARTICLE ACCELERATION IN RELATIVISTIC LOW-DENSITY ELECTRON-POSITRON PLASMAS WITHOUT GUIDE FIELD

    SciTech Connect

    Bessho, Naoki; Bhattacharjee, A.

    2012-05-10

    Magnetic reconnection and particle acceleration in relativistic Harris sheets in low-density electron-positron plasmas with no guide field have been studied by means of two-dimensional particle-in-cell simulations. Reconnection rates are of the order of one when the background density in a Harris sheet is of the order of 1% of the density in the current sheet, which is consistent with previous results in the non-relativistic regime. It has been demonstrated that the increase of the Lorentz factors of accelerated particles significantly enhances the collisionless resistivity needed to sustain a large reconnection electric field. It is shown analytically and numerically that the energy spectrum of accelerated particles near the X-line is the product of a power law and an exponential function of energy, {gamma}{sup -1/4}exp (- a{gamma}{sup 1/2}), where {gamma} is the Lorentz factor and a is a constant. However, in the low-density regime, while the most energetic particles are produced near X-lines, many more particles are energized within magnetic islands. Particles are energized in contracting islands by multiple reflection, but the mechanism is different from Fermi acceleration in magnetic islands for magnetized particles in the presence of a guide field. In magnetic islands, strong core fields are generated and plasma beta values are reduced. As a consequence, the fire-hose instability condition is not satisfied in most of the island region, and island contraction and particle acceleration can continue. In island coalescence, reconnection between two islands can accelerate some particles, however, many particles are decelerated and cooled, which is contrary to what has been discussed in the literature on particle acceleration due to reconnection in non-relativistic hydrogen plasmas.

  3. Atlas and feature based 3D pathway visualization enhancement for skull base pre-operative fast planning from head CT

    NASA Astrophysics Data System (ADS)

    Aghdasi, Nava; Li, Yangming; Berens, Angelique; Moe, Kris S.; Bly, Randall A.; Hannaford, Blake

    2015-03-01

    Minimally invasive neuroendoscopic surgery provides an alternative to open craniotomy for many skull base lesions. These techniques provides a great benefit to the patient through shorter ICU stays, decreased post-operative pain and quicker return to baseline function. However, density of critical neurovascular structures at the skull base makes planning for these procedures highly complex. Furthermore, additional surgical portals are often used to improve visualization and instrument access, which adds to the complexity of pre-operative planning. Surgical approach planning is currently limited and typically involves review of 2D axial, coronal, and sagittal CT and MRI images. In addition, skull base surgeons manually change the visualization effect to review all possible approaches to the target lesion and achieve an optimal surgical plan. This cumbersome process relies heavily on surgeon experience and it does not allow for 3D visualization. In this paper, we describe a rapid pre-operative planning system for skull base surgery using the following two novel concepts: importance-based highlight and mobile portal. With this innovation, critical areas in the 3D CT model are highlighted based on segmentation results. Mobile portals allow surgeons to review multiple potential entry portals in real-time with improved visualization of critical structures located inside the pathway. To achieve this we used the following methods: (1) novel bone-only atlases were manually generated, (2) orbits and the center of the skull serve as features to quickly pre-align the patient's scan with the atlas, (3) deformable registration technique was used for fine alignment, (4) surgical importance was assigned to each voxel according to a surgical dictionary, and (5) pre-defined transfer function was applied to the processed data to highlight important structures. The proposed idea was fully implemented as independent planning software and additional

  4. SU-E-J-251: Fast MR-Based DRR Generation Using Highly Undersampled 3D Radial Trajectories

    SciTech Connect

    Pereira, G; Traughber, B; Traughber, M; Hu, L; Su, K; Muzic, R

    2014-06-01

    Purpose: The construction of a digitally reconstructed radiograph (DRR) from a magnetic resonance image (MRI) is possible if the cortical bone signal can be acquired and separated from air and soft tissue. This may be accomplished by subtracting a long echo-time, in-phase, gradient echo (GRE) image volume from an ultra-short echo time free induction decay (FID) image to produce a bone-enhanced (BE) image that reveals cortical bone. One limitation of this approach is the length of time required for data acquisition, which can limit the quality of the DRRs due to patient and organ motion. This study aimed to significantly reduce the acquisition time without compromising DRR quality. Methods: Brain data were acquired from two volunteers using a 3T MR scanner (Ingenia, Philips Healthcare). The FID and GRE images were acquired in a single acquisition using a 3D radial readout sequence with the following parameters: TE1=0.142ms (ultra-short), TE2=2.197ms (nearly in-phase), 2*2*2mm3 isotropic voxels, 250*250*250mm3 FOV. To reduce the acquisition time, k-space was sampled at 75, 50 and 25% of a full 3D sphere . The TE2 image was subtracted from the TE1 image to generate the BE images. The BE images were used to generate DRRs using the Pinnacle treatment planning system (Philips-version 9.2). The quality of the DRRs was evaluated qualitatively by 5 board certified medical physicists for clinical usefulness. Results: The acquisition time for 75, 50 and 25% sampling schemes were 219s, 146s, and 73s, respectively, the latter of which was a four-fold reduction in scan time compared to a 300s fully-sampled acquisition. All DRRs obtained were of acceptable quality and were shown to have sufficient information for clinical 2D image matching. Conclusion: Undersampling k-space while maintaining the same range of frequency information results in significantly reduced scan time and clinically acceptable DRR image quality. Drs. B Traughber and R Muzic have research support from Philips

  5. Multi-frequency color-marked fringe projection profilometry for fast 3D shape measurement of complex objects.

    PubMed

    Jiang, Chao; Jia, Shuhai; Dong, Jun; Bao, Qingchen; Yang, Jia; Lian, Qin; Li, Dichen

    2015-09-21

    We propose a novel multi-frequency color-marked fringe projection profilometry approach to measure the 3D shape of objects with depth discontinuities. A digital micromirror device projector is used to project a color map consisting of a series of different-frequency color-marked fringe patterns onto the target object. We use a chromaticity curve to calculate the color change caused by the height of the object. The related algorithm to measure the height is also described in this paper. To improve the measurement accuracy, a chromaticity curve correction method is presented. This correction method greatly reduces the influence of color fluctuations and measurement error on the chromaticity curve and the calculation of the object height. The simulation and experimental results validate the utility of our method. Our method avoids the conventional phase shifting and unwrapping process, as well as the independent calculation of the object height required by existing techniques. Thus, it can be used to measure complex and dynamic objects with depth discontinuities. These advantages are particularly promising for industrial applications. PMID:26406621

  6. A capacitive DAC with custom 3-D 1-fF MOM unit capacitors optimized for fast-settling routing in high speed SAR ADCs

    NASA Astrophysics Data System (ADS)

    Chixiao, Chen; Jixuan, Xiang; Huabin, Chen; Jun, Xu; Fan, Ye; Ning, Li; Junyan, Ren

    2015-05-01

    Asynchronous successive approximation register (SAR) analog-to-digital converters (ADC) feature high energy efficiency but medium performance. From the point of view of speed, the key bottleneck is the unit capacitor size. In this paper, a small size three-dimensional (3-D) metal—oxide—metal (MOM) capacitor is proposed. The unit capacitor has a capacitance of 1-fF. It shapes as an umbrella, which is designed for fast settling consideration. A comparison among the proposed capacitor with other 3-D MOM capacitors is also given in the paper. To demonstrate the effectiveness of the MOM capacitor, a 6-b capacitive DAC is implemented in TSMC 1P9M 65 nm LP CMOS technology. The DAC consumes a power dissipation of 0.16 mW at the rate of 100 MS/s, excluding a source-follower based output buffer. Static measurement result shows that INL is less than ±1 LSB and DNL is less than ±0.5 LSB. In addition, a 100 MS/s 9-bit SAR ADC with the proposed 3-D capacitor is simulated.

  7. Sensitivity and reproducibility of a new fast 3D segmentation technique for clinical MR-based brain volumetry in multiple sclerosis.

    PubMed

    Lukas, Carsten; Hahn, Horst K; Bellenberg, Barbara; Rexilius, Jan; Schmid, Gebhard; Schimrigk, Sebastian K; Przuntek, Horst; Köster, Odo; Peitgen, Heinz-Otto

    2004-11-01

    Fast, reliable and easy-to-use methods to quantify brain atrophy are of increasing importance in clinical studies on neuro-degenerative diseases. Here, ILAB 4, a new volumetry software that uses a fast semi-automated 3D segmentation of thin-slice T1-weighted 3D MR images based on a modified watershed transform and an automatic histogram analysis was evaluated. It provides the cerebral volumes: whole brain, white matter, gray matter and intracranial cavity. Inter- and intra-rater reliability and scan-rescan reproducibility were excellent in measuring whole brain volumes (coefficients of variation below 0.5%) of volunteers and patients. However, gray and white matter volumes were more susceptible to image quality. High accuracy of the absolute volume results (+/-5 ml) were shown by phantom and preparation measurements. Analysis times were 6 min for processing of 128 slices. The proposed technique is reliable and highly suitable for quantitative studies of brain atrophy, e.g., in multiple sclerosis. PMID:15536555

  8. On the numerical simulation of the ablative Rayleigh-Taylor instability in laser-driven ICF targets using the FastRad3D code

    NASA Astrophysics Data System (ADS)

    Bates, Jason; Schmitt, Andrew; Zalesak, Steve

    2015-11-01

    The ablative Rayleigh-Taylor (RT) instability is a key factor in the performance of directly-drive inertial-confinement-fusion (ICF) targets. Although this subject has been studied for quite some time, the accurate simulation of the ablative RT instability has proven to be a challenging task for many radiation hydrodynamics codes, particularly when it comes to capturing the ablatively-stabilized region of the linear dispersion spectrum and modeling ab initio perturbations. In this poster, we present results from recent two-dimensional numerical simulations of the ablative RT instability that were performed using the Eulerian code FastRad3D at the U.S. Naval Research Laboratory. We consider both planar and spherical geometries, low and moderate-Z target materials, different laser wavelengths and where possible, compare our findings with experiment data, linearized theory and/or results from other radiation hydrodynamics codes. Overall, we find that FastRad3D is capable of simulating the ablative RT instability quite accurately, although some uncertainties/discrepancies persist. We discuss these issues, as well as some of the numerical challenges associated with modeling this class of problems. Work supported by U.S. DOE/NNSA.

  9. Magnetohydrodynamic simulations of turbulent magnetic reconnection

    SciTech Connect

    Fan Quanlin; Feng Xueshang; Xiang Changqing

    2004-12-01

    Turbulent reconnection process in a one-dimensional current sheet is investigated by means of a two-dimensional compressible one-fluid magnetohydrodynamic simulation with spatially uniform, fixed resistivity. Turbulence is set up by adding to the sheet pinch small but finite level of broadband random-phased magnetic field components. To clarify the nonlinear spatial-temporal nature of the turbulent reconnection process the reconnection system is treated as an unforced initial value problem without any anomalous resistivity model adopted. Numerical results demonstrate the duality of turbulent reconnection, i.e., a transition from Sweet-Parker-like slow reconnection to Petschek-like fast reconnection in its nonlinear evolutionary process. The initial slow reconnection phase is characterized by many independent microreconnection events confined within the sheet region and a global reconnection rate mainly dependent on the initially added turbulence and insensitive to variations of the plasma {beta} and resistivity. The formation and amplification of the major plasmoid leads the following reconnection process to a rapid reconnection stage with a fast reconnection rate of the order of 0.1 or even larger, drastically changing the topology of the global magnetic field. That is, the presence of magnetohydrodynamic turbulence in large-scale current sheets can raise the reconnection rate from small values on the order of the Sweet-Parker rate to high values on the order of the Petscheck rate through triggering an evolution toward fast magnetic reconnection. Meanwhile, the backward coupling between the small- and large-scale magnetic field dynamics has been properly represented through the present high resolution simulation. The undriven turbulent reconnection model established here expresses a solid numerical basis for the previous schematic two-step magnetic reconnection models and a possible explanation of two-stage energy release process of solar explosives.

  10. Automatic localization of target vertebrae in spine surgery using fast CT-to-fluoroscopy (3D-2D) image registration

    NASA Astrophysics Data System (ADS)

    Otake, Y.; Schafer, S.; Stayman, J. W.; Zbijewski, W.; Kleinszig, G.; Graumann, R.; Khanna, A. J.; Siewerdsen, J. H.

    2012-02-01

    Localization of target vertebrae is an essential step in minimally invasive spine surgery, with conventional methods relying on "level counting" - i.e., manual counting of vertebrae under fluoroscopy starting from readily identifiable anatomy (e.g., the sacrum). The approach requires an undesirable level of radiation, time, and is prone to counting errors due to the similar appearance of vertebrae in projection images; wrong-level surgery occurs in 1 of every ~3000 cases. This paper proposes a method to automatically localize target vertebrae in x-ray projections using 3D-2D registration between preoperative CT (in which vertebrae are preoperatively labeled) and intraoperative fluoroscopy. The registration uses an intensity-based approach with a gradient-based similarity metric and the CMA-ES algorithm for optimization. Digitally reconstructed radiographs (DRRs) and a robust similarity metric are computed on GPU to accelerate the process. Evaluation in clinical CT data included 5,000 PA and LAT projections randomly perturbed to simulate human variability in setup of mobile intraoperative C-arm. The method demonstrated 100% success for PA view (projection error: 0.42mm) and 99.8% success for LAT view (projection error: 0.37mm). Initial implementation on GPU provided automatic target localization within about 3 sec, with further improvement underway via multi-GPU. The ability to automatically label vertebrae in fluoroscopy promises to streamline surgical workflow, improve patient safety, and reduce wrong-site surgeries, especially in large patients for whom manual methods are time consuming and error prone.

  11. A fast rigid-registration method of inferior limb X-ray image and 3D CT images for TKA surgery

    NASA Astrophysics Data System (ADS)

    Ito, Fumihito; O. D. A, Prima; Uwano, Ikuko; Ito, Kenzo

    2010-03-01

    In this paper, we propose a fast rigid-registration method of inferior limb X-ray films (two-dimensional Computed Radiography (CR) images) and three-dimensional Computed Tomography (CT) images for Total Knee Arthroplasty (TKA) surgery planning. The position of the each bone, such as femur and tibia (shin bone), in X-ray film and 3D CT images is slightly different, and we must pay attention how to use the two different images, since X-ray film image is captured in the standing position, and 3D CT is captured in decubitus (face up) position, respectively. Though the conventional registration mainly uses cross-correlation function between two images,and utilizes optimization techniques, it takes enormous calculation time and it is difficult to use it in interactive operations. In order to solve these problems, we calculate the center line (bone axis) of femur and tibia (shin bone) automatically, and we use them as initial positions for the registration. We evaluate our registration method by using three patient's image data, and we compare our proposed method and a conventional registration, which uses down-hill simplex algorithm. The down-hill simplex method is an optimization algorithm that requires only function evaluations, and doesn't need the calculation of derivatives. Our registration method is more effective than the downhill simplex method in computational time and the stable convergence. We have developed the implant simulation system on a personal computer, in order to support the surgeon in a preoperative planning of TKA. Our registration method is implemented in the simulation system, and user can manipulate 2D/3D translucent templates of implant components on X-ray film and 3D CT images.

  12. A fast 3D surface reconstruction and volume estimation method for grain storage based on priori model

    NASA Astrophysics Data System (ADS)

    Liang, Xian-hua; Sun, Wei-dong

    2011-06-01

    Inventory checking is one of the most significant parts for grain reserves, and plays a very important role on the macro-control of food and food security. Simple, fast and accurate method to obtain internal structure information and further to estimate the volume of the grain storage is needed. Here in our developed system, a special designed multi-site laser scanning system is used to acquire the range data clouds of the internal structure of the grain storage. However, due to the seriously uneven distribution of the range data, this data should firstly be preprocessed by an adaptive re-sampling method to reduce the data redundancy as well as noise. Then the range data is segmented and useful features, such as plane and cylinder information, are extracted. With these features a coarse registration between all of these single-site range data is done, and then an Iterative Closest Point (ICP) algorithm is carried out to achieve fine registration. Taking advantage of the structure of the grain storage being well defined and the types of them are limited, a fast automatic registration method based on the priori model is proposed to register the multi-sites range data more efficiently. Then after the integration of the multi-sites range data, the grain surface is finally reconstructed by a delaunay based algorithm and the grain volume is estimated by a numerical integration method. This proposed new method has been applied to two common types of grain storage, and experimental results shown this method is more effective and accurate, and it can also avoids the cumulative effect of errors when registering the overlapped area pair-wisely.

  13. Čerenkov emission of quasiparallel whistlers by fast electron phase-space holes during magnetic reconnection.

    PubMed

    Goldman, M V; Newman, D L; Lapenta, G; Andersson, L; Gosling, J T; Eriksson, S; Markidis, S; Eastwood, J P; Ergun, R

    2014-04-11

    Kinetic simulations of magnetotail reconnection have revealed electromagnetic whistlers originating near the exhaust boundary and propagating into the inflow region. The whistler production mechanism is not a linear instability, but rather is Čerenkov emission of almost parallel whistlers from localized moving clumps of charge (finite-size quasiparticles) associated with nonlinear coherent electron phase space holes. Whistlers are strongly excited by holes without ever growing exponentially. In the simulation the whistlers are emitted in the source region from holes that accelerate down the magnetic separatrix towards the x line. The phase velocity of the whistlers vφ in the source region is everywhere well matched to the hole velocity vH as required by the Čerenkov condition. The simulation shows emission is most efficient near the theoretical maximum vφ=half the electron Alfven speed, consistent with the new theoretical prediction that faster holes radiate more efficiently. While transferring energy to whistlers the holes lose coherence and dissipate over a few local ion inertial lengths. The whistlers, however, propagate to the x line and out over many 10's of ion inertial lengths into the inflow region of reconnection. As the whistlers pass near the x line they modulate the rate at which magnetic field lines reconnect. PMID:24765977

  14. The fast multipole method in the differential algebra framework for the calculation of 3D space charge fields

    NASA Astrophysics Data System (ADS)

    Zhang, He

    2013-01-01

    The space charge effect is one of the most important collective effects in beam dynamic studies. In many cases, numerical simulations are inevitable in order to get a clear understanding of this effect. The particle-particle interaction algorithms and the article-in-cell algorithms are widely used in space charge effect simulations. But they both have difficulties in dealing with highly correlated beams with abnormal distributions or complicated geometries. We developed a new algorithm to calculate the three dimensional self-field between charged particles by combining the differential algebra (DA) techniques with the fast multi-pole method (FMM). The FMM hierarchically decomposes the whole charged domain into many small regions. For each region it uses multipole expansions to represent the potential/field contributions from the particles far away from the region and then converts the multipole expansions into a local expansion inside the region. The potential/field due to the far away particles is calculated from the expansions and the potential/field due to the nearby particles is calculated from the Coulomb force law. The DA techniques are used in the calculation, translation and converting of the expansions. The new algorithm scales linearly with the total number of particles and it is suitable for any arbitrary charge distribution. Using the DA techniques, we can calculate both the potential/field and its high order derivatives, which will be useful for the purpose of including the space charge effect into transfer maps in the future. We first present the single level FMM, which decomposes the whole domain into boxes of the same size. It works best for charge distributions that are not overly non-uniform. Then we present the multilevel fast multipole algorithm (MLFMA), which decomposes the whole domain into different sized boxes according to the charge density. Finer boxes are generated where the higher charge density exists; thus the algorithm works for any

  15. Fast and robust extraction of centerlines in 3D tubular structures using a scattered-snakelet approach

    NASA Astrophysics Data System (ADS)

    Spuhler, Christoph; Harders, Matthias; Székely, Gábor

    2006-03-01

    We present a fast and robust approach for automatic centerline extraction of tubular structures. The underlying idea is to cut traditional snakes into a set of shorter, independent segments - so-called snakelets. Following the same variational principles, each snakelet acts locally and extracts a subpart of the overall structure. After a parallel optimization step, outliers are detected and the remaining segments then form an implicit centerline. No manual initialization of the snakelets is necessary, which represents one advantage of the method. Moreover, computational complexity does not directly depend on dataset size, but on the number of snake segments necessary to cover the structure of interest, resulting in short computation times. Lastly, the approach is robust even for very complex datasets such as the small intestine. Our approach was tested on several medical datasets (CT datasets of colon, small bowel, and blood vessels) and yielded smooth, connected centerlines with few or no branches. The computation time needed is less than a minute using standard computing hardware.

  16. Magnetic reconnection in the presence of externally driven and self-generated turbulence

    SciTech Connect

    Karimabadi, H.; Lazarian, A.

    2013-11-15

    Magnetic reconnection is an important process that violates flux freezing and induces change of magnetic field topology in conducting fluids and, as a consequence, converts magnetic field energy into particle energy. It is thought to be operative in laboratory, heliophysical, and astrophysical plasmas. These environments exhibit wide variations in collisionality, ranging from collisionless in the Earth's magnetosphere to highly collisional in molecular clouds. A common feature among these plasmas is, however, the presence of turbulence. We review the present understanding of the effects of turbulence on the reconnection rate, discussing both how strong pre-existing turbulence modifies Sweet-Parker reconnection and how turbulence may develop as a result of reconnection itself. In steady state, reconnection rate is proportional to the aspect ratio of the diffusion region. Thus, two general MHD classes of models for fast reconnection have been proposed, differing on whether they keep the aspect ratio finite by increasing the width due to turbulent broadening or shortening the length of the diffusion layer due to plasmoid instability. One of the consequences of the plasmoid instability model is the possibility that the current sheet thins down to collisionless scales where kinetic effects become dominant. As a result, kinetic effects may be of importance for many astrophysical applications which were considered to be in the realm of MHD. Whether pre-existing turbulence can significantly modify the transition to the kinetic regime is not currently known. Although most studies of turbulent reconnection have been based on MHD, recent advances in kinetic simulations are enabling 3D studies of turbulence and reconnection in the collisionless regime. A summary of these recent works, highlighting similarities and differences with the MHD models of turbulent reconnection, as well as comparison with in situ observations in the magnetosphere and in the solar wind, are presented

  17. The ATLAS3D project - XXVI. H I discs in real and simulated fast and slow rotators

    NASA Astrophysics Data System (ADS)

    Serra, Paolo; Oser, Ludwig; Krajnović, Davor; Naab, Thorsten; Oosterloo, Tom; Morganti, Raffaella; Cappellari, Michele; Emsellem, Eric; Young, Lisa M.; Blitz, Leo; Davis, Timothy A.; Duc, Pierre-Alain; Hirschmann, Michaela; Weijmans, Anne-Marie; Alatalo, Katherine; Bayet, Estelle; Bois, Maxime; Bournaud, Frédéric; Bureau, Martin; Crocker, Alison F.; Davies, Roger L.; de Zeeuw, P. T.; Khochfar, Sadegh; Kuntschner, Harald; Lablanche, Pierre-Yves; McDermid, Richard M.; Sarzi, Marc; Scott, Nicholas

    2014-11-01

    One quarter of all nearby early-type galaxies (ETGs) outside Virgo host a disc/ring of H I with size from a few to tens of kpc and mass up to ˜109 M⊙. Here we investigate whether this H I is related to the presence of a stellar disc within the host making use of the classification of ETGs in fast and slow rotators (FR/SR). We find a large diversity of H I masses and morphologies within both families. Surprisingly, SRs are detected as often, host as much H I and have a similar rate of H I discs/rings as FRs. Accretion of H I is therefore not always linked to the growth of an inner stellar disc. The weak relation between H I and stellar disc is confirmed by their frequent kinematical misalignment in FRs, including cases of polar and counterrotating gas. In SRs the H I is usually polar. This complex picture highlights a diversity of ETG formation histories which may be lost in the relative simplicity of their inner structure and emerges when studying their outer regions. We find that Λ CDM hydrodynamical simulations have difficulties reproducing the H I properties of ETGs. The gas discs formed in simulations are either too massive or too small depending on the star formation feedback implementation. Kinematical misalignments match the observations only qualitatively. The main point of conflict is that nearly all simulated FRs and a large fraction of all simulated SRs host corotating H I. This establishes the H I properties of ETGs as a novel challenge to simulations.

  18. Magnetic Reconnection

    NASA Video Gallery

    This science visualization shows a magnetospheric substorm, during which, magnetic reconnection causes energy to be rapidly released along the field lines in the magnetotail, that part of the magne...

  19. Fast voxel-based 2D/3D registration algorithm using a volume rendering method based on the shear-warp factorization

    NASA Astrophysics Data System (ADS)

    Weese, Juergen; Goecke, Roland; Penney, Graeme P.; Desmedt, Paul; Buzug, Thorsten M.; Schumann, Heidrun

    1999-05-01

    2D/3D registration makes it possible to use pre-operative CT scans for navigation purposes during X-ray fluoroscopy guided interventions. We present a fast voxel-based method for this registration task, which uses a recently introduced similarity measure (pattern intensity). This measure is especially suitable for 2D/3D registration, because it is robust with respect to structures such as a stent visible in the X-ray fluoroscopy image but not in the CT scan. The method uses only a part of the CT scan for the generation of digitally reconstructed radiographs (DRRs) to accelerate their computation. Nevertheless, computation time is crucial for intra-operative application and a further speed-up is required, because numerous DRRs must be computed. For that reason, the suitability of different volume rendering methods for 2D/3D registration has been investigated. A method based on the shear-warp factorization of the viewing transformation turned out to be especially suitable and builds the basis of the registration algorithm. The algorithm has been applied to images of a spine phantom and to clinical images. For comparison, registration results have been calculated using ray-casting. The shear-warp factorization based rendering method accelerates registration by a factor of up to seven compared to ray-casting without degrading registration accuracy. Using a vertebra as feature for registration, computation time is in the range of 3-4s (Sun UltraSparc, 300 MHz) which is acceptable for intra-operative application.

  20. Multi-Stencil Streamline Fast Marching: A General 3-D Framework to Determine Myocardial Thickness and Transmurality in Late Enhancement Images.

    PubMed

    Merino-Caviedes, Susana; Cordero-Grande, Lucilio; Revilla-Orodea, Ana; Sevilla-Ruiz, Teresa; Pérez, M Teresa; Martín-Fernández, Marcos; Alberola-López, Carlos

    2014-01-01

    We propose a fully 3-D methodology for the computation of myocardial nonviable tissue transmurality in contrast enhanced magnetic resonance images. The outcome is a continuous map defined within the myocardium where not only current state-of-the-art measures of transmurality can be calculated, but also information on the location of nonviable tissue is preserved. The computation is done by means of a partial differential equation framework we have called multi-stencil streamline fast marching. Using it, the myocardial and scarred tissue thickness is simultaneously computed. Experimental results show that the proposed 3-D method allows for the computation of transmurality in myocardial regions where current 2-D methods are not able to as conceived, and it also provides more robust and accurate results in situations where the assumptions on which current 2-D methods are based-i.e., there is a visible endocardial contour and its corresponding epicardial points lie on the same slice-, are not met. PMID:24235299

  1. pySeismicFMM: Python based travel time calculation in regular 2D and 3D grids in Cartesian and geographic coordinates using Fast Marching Method

    NASA Astrophysics Data System (ADS)

    Polkowski, Marcin

    2016-04-01

    Seismic wave travel time calculation is the most common numerical operation in seismology. The most efficient is travel time calculation in 1D velocity model - for given source, receiver depths and angular distance time is calculated within fraction of a second. Unfortunately, in most cases 1D is not enough to encounter differentiating local and regional structures. Whenever possible travel time through 3D velocity model has to be calculated. It can be achieved using ray calculation or time propagation in space. While single ray path calculation is quick it is complicated to find the ray path that connects source with the receiver. Time propagation in space using Fast Marching Method seems more efficient in most cases, especially when there are multiple receivers. In this presentation a Python module pySeismicFMM is presented - simple and very efficient tool for calculating travel time from sources to receivers. Calculation requires regular 2D or 3D velocity grid either in Cartesian or geographic coordinates. On desktop class computer calculation speed is 200k grid cells per second. Calculation has to be performed once for every source location and provides travel time to all receivers. pySeismicFMM is free and open source. Development of this tool is a part of authors PhD thesis. National Science Centre Poland provided financial support for this work via NCN grant DEC-2011/02/A/ST10/00284.

  2. Validation of 3D Code KATRIN For Fast Neutron Fluence Calculation of VVER-1000 Reactor Pressure Vessel by Ex-Vessel Measurements and Surveillance Specimens Results

    NASA Astrophysics Data System (ADS)

    Dzhalandinov, A.; Tsofin, V.; Kochkin, V.; Panferov, P.; Timofeev, A.; Reshetnikov, A.; Makhotin, D.; Erak, D.; Voloschenko, A.

    2016-02-01

    Usually the synthesis of two-dimensional and one-dimensional discrete ordinate calculations is used to evaluate neutron fluence on VVER-1000 reactor pressure vessel (RPV) for prognosis of radiation embrittlement. But there are some cases when this approach is not applicable. For example the latest projects of VVER-1000 have upgraded surveillance program. Containers with surveillance specimens are located on the inner surface of RPV with fast neutron flux maximum. Therefore, the synthesis approach is not suitable enough for calculation of local disturbance of neutron field in RPV inner surface behind the surveillance specimens because of their complicated and heterogeneous structure. In some cases the VVER-1000 core loading consists of fuel assemblies with different fuel height and the applicability of synthesis approach is also ambiguous for these fuel cycles. Also, the synthesis approach is not enough correct for the neutron fluence estimation at the RPV area above core top. Because of these reasons only the 3D neutron transport codes seem to be satisfactory for calculation of neutron fluence on the VVER-1000 RPV. The direct 3D calculations are also recommended by modern regulations.

  3. Magnetohydrodynamic structure of a plasmoid in fast reconnection in low-beta plasmas: Shock-shock interactions

    SciTech Connect

    Zenitani, Seiji

    2015-03-15

    The shock structure of a plasmoid in magnetic reconnection in low-beta plasmas is investigated by two-dimensional magnetohydrodynamic simulations. Using a high-accuracy code with unprecedented resolution, shocks, discontinuities, and their intersections are resolved and clarified. Contact discontinuities emanate from triple-shock intersection points, separating fluids of different origins. Shock-diamonds inside the plasmoid appear to decelerate a supersonic flow. New shock-diamonds and a slow expansion fan are found inside the Petschek outflow. A sufficient condition for the new shock-diamonds and the relevance to astrophysical jets are discussed.

  4. Large Reconnection Experiment (LRX): A Major Next-Step for Laboratory Studies of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Ji, Hantao; Yamada, Masaaki; Prager, Stewart; Daughton, William

    2012-10-01

    A new large plasma experiment, called the Large Reconnection Experiment or LRX, has been proposed to study magnetic reconnection in regimes directly relevant to fusion, space, and astrophysical plasmas. There are at least two possibly coupled mechanisms to explain why reconnection is fast as compared to the MHD predictions: one by physics beyond MHD, and the other by breakdown of the MHD current sheet via plasmoid instabilities into a state of interacting flux ropes. However, the former works only on the ion scales, much smaller than the plasma size, while the latter is only predicted theoretically. Further progress to study these is currently impeded by several severe limitations (1) in realistic simulations (especially in 3D), (2) in space observations due to a small numbers of in-situ measurements, (3) in solar observations due to limited spatial resolution of remote-sensing techniques, (4) in fusion plasmas due to the limited diagnostic accessibility, and (5) in the existing basic laboratory experiments due to limited scale separations. All of these strongly motivate the well-controlled/diagnosed, collaborative LRX project to simultaneously achieve large scale separations and high Lundquist numbers. Major questions and conceptual design for the LRX project will be discussed.

  5. Strong and fast-recovery organic/inorganic hybrid AuNPs-supramolecular gels based on loofah-like 3D networks.

    PubMed

    He, Huiwen; Chen, Si; Tong, Xiaoqian; Chen, Yining; Wu, Bozhen; Ma, Meng; Wang, Xiaosong; Wang, Xu

    2016-01-21

    Super strong and fast-recovery organic/inorganic hybrid gold nanoparticle (AuNPs)-supramolecular gels based on a three-dimensional loofah-like nanoscale network self-assembled by polyhedral oligomeric silsesquioxane (POSS) core supramolecular gelators are reported for the first time. Two series of POSS core organic/inorganic hybrid gelators, POSS-BOC-l-Homophenylalanine (POSS-Hpy) and POSS-Boc-Cys(Bzl)-OH (POSS-Cys), with two types of peripherals having different abilities for driving the self-assembly of AuNPs in gels were designed and synthesized, both of which self-assembled into three-dimensional loofah-like nanoscale gel networks producing hybrid physical gels with fast-recovery behaviors. The mechanical properties of the resultant hybrid gels were dramatically increased by as much as 100 times in the system of sulfur containing POSS-Cys gelators without destroying the fast-recovery behaviors, with the addition of AuNPs, which had direct interaction with AuNPs to give S-Au non-covalent driving force to lead AuNPs self-assemble onto the 3D loofah-like network nanofibres in the supramolecular hybrid gel system. However, in the POSS-Hpy gelator system without sulfur, no strong interaction with AuNPs existed and the POSS-Hpy nanocomposites showed no clear changes in morphology, thermal stability or rheological properties, confirmed by scanning electron microscopy (SEM), transmission electron microscopy (TEM), tube-inversion and rotational rheometer measurements. This indicated that the organic/inorganic hybrid gelator POSS-Cys could be applied to the formation of soft materials in which AuNPs were self-assembled and closely arranged into three-dimensional nanoscale networks. This hybrid material has great potential for applications in self-recovery, nano- and micron-scale electronic devices, because it has both a large mechanical strength and a fast-recovery capability. PMID:26568047

  6. Solar flares and magnetic reconnection in quasi-separatrix layers

    NASA Astrophysics Data System (ADS)

    Aulanier, G.; Demoulin, P.; Janvier, M.; Masson, S.; Pariat, E.

    2012-10-01

    Magnetic reconnection is a fundamental plasma physics process which is believed to be responsible for the bulk of energy release in solar flares. One the one hand, the onset of fast reconnection in high-Reynolds plasmas has long since been regarded as, perhaps, the major issue to understand. On the other hand, little attention has relatively been given to the three-dimensional nature of this phenomenon. Up to very recently, the latter has mostly been addressed by the solar physics community, presumably due to the wealth of space-borne and ground-based observations of three-dimensional solar coronal features during flares. Among other 3D concept, finite-B ``quasi-separatrix layers'' (QSLs) have been introduced in the nineties, as a generalization of the concept of true separatrices emanating from null-points. In this talk, I will show how both solar and experimental physics have revealed that these QSLs physically behave like true separatrices, in terms of current sheet formation and magnetic reconnection, albeit for the continuous slippage of field lines during the process. I will then show how this ``slip-running reconnection'' occurs in the wake of flux-ropes erupting from the solar corona towrds the heliosphere, and how it it eventually forms the observed post-flare loops in the Sun's corona.

  7. The Neighboring Column Approximation (NCA) - A fast approach for the calculation of 3D thermal heating rates in cloud resolving models

    NASA Astrophysics Data System (ADS)

    Klinger, Carolin; Mayer, Bernhard

    2016-01-01

    Due to computational costs, radiation is usually neglected or solved in plane parallel 1D approximation in today's numerical weather forecast and cloud resolving models. We present a fast and accurate method to calculate 3D heating and cooling rates in the thermal spectral range that can be used in cloud resolving models. The parameterization considers net fluxes across horizontal box boundaries in addition to the top and bottom boundaries. Since the largest heating and cooling rates occur inside the cloud, close to the cloud edge, the method needs in first approximation only the information if a grid box is at the edge of a cloud or not. Therefore, in order to calculate the heating or cooling rates of a specific grid box, only the directly neighboring columns are used. Our so-called Neighboring Column Approximation (NCA) is an analytical consideration of cloud side effects which can be considered a convolution of a 1D radiative transfer result with a kernel or radius of 1 grid-box (5 pt stencil) and which does usually not break the parallelization of a cloud resolving model. The NCA can be easily applied to any cloud resolving model that includes a 1D radiation scheme. Due to the neglect of horizontal transport of radiation further away than one model column, the NCA works best for model resolutions of about 100 m or lager. In this paper we describe the method and show a set of applications of LES cloud field snap shots. Correction terms, gains and restrictions of the NCA are described. Comprehensive comparisons to the 3D Monte Carlo Model MYSTIC and a 1D solution are shown. In realistic cloud fields, the full 3D simulation with MYSTIC shows cooling rates up to -150 K/d (100 m resolution) while the 1D solution shows maximum coolings of only -100 K/d. The NCA is capable of reproducing the larger 3D cooling rates. The spatial distribution of the heating and cooling is improved considerably. Computational costs are only a factor of 1.5-2 higher compared to a 1D

  8. Reconnecting Flux Ropes

    NASA Astrophysics Data System (ADS)

    Gekelman, Walter; van Compernolle, Bart

    2012-10-01

    Magnetic flux ropes are due to helical currents and form a dense carpet of arches on the surface of the sun. Occasionally one tears loose as a coronal mass ejection and its rope structure is detected by satellites close to the earth. Current sheets can tear into filaments and these are nothing other than flux ropes. Ropes are not static, they exert mutual JxB forces causing them to twist about each other and merge. Kink instabilities cause them to violently smash into each other and reconnect at the point of contact. We report on experiments done in the large plasma device (LAPD) at UCLA (L=17m,dia=60cm,0.3<=B0z<=2.5kG,n˜2x10^12cm-3)on three dimensional flux ropes. Two, three or more magnetic flux ropes are generated from initially adjacent pulsed current channels in a background magnetized plasma. The currents and magnetic fields form exotic shapes with no ignorable direction and no magnetic nulls. Volumetric space-time data show multiple reconnection sites with time-dependent locations. The concept of a quasi-separatrix layer (QSL), a tool to understand 3D reconnection without null points. In our experiment the QSL is a narrow ribbon-like region(s) that twists between field lines. Within the QSL(s) field lines that start close to one another rapidly diverge as they pass through one or more reconnection regions. When the field lines are tracked they are observed to slip along the QSL when reconnection occurs. The Heating and other co-existing waves will be presented.

  9. Intuitive approach to magnetic reconnection

    SciTech Connect

    Kulsrud, Russell M.

    2011-11-15

    Two reconnection problems are considered. The first problem concerns global physics. The plasma in the global reconnection region is in magnetostatic equilibrium. It is shown that this equilibrium can be uniquely characterized by a set of constraints. During reconnection and independently of the local reconnection physics, these constraints can be uniquely evolved from any initial state. The second problem concerns Petschek reconnection. Petschek's model for fast reconnection, which is governed by resistive MHD equations with constant resistivity is not validated by numerical simulations. Malyshkin et al.[Phys. Plasmas 12, 102920 (2005)], showed that the reason for the discrepancy is that Petschek did not employ Ohm's law throughout the local diffusion region, but only at the X-point. A derivation of Petschek reconnection, including Ohm's law throughout the entire diffusion region, removes the discrepancy. This derivation is based largely on Petschek's original 1964 calculation [in AAS-NASA Symposium on Solar Flares (National Aeronautics and Space Administration, Washington, D.C., 1964), NASA SP50, p. 425]. A useful physical interpretation of the role which Ohm's law plays in the diffusion region is presented.

  10. LLNL-Earth3D

    2013-10-01

    Earth3D is a computer code designed to allow fast calculation of seismic rays and travel times through a 3D model of the Earth. LLNL is using this for earthquake location and global tomography efforts and such codes are of great interest to the Earth Science community.

  11. Exploring Magnetopause Reconnection with MMS

    NASA Astrophysics Data System (ADS)

    Burch, J. L.; Torbert, R. B.; Moore, T. E.; Pollock, C. J.; Mauk, B.; Fuselier, S. A.; Nakamura, R.; Hesse, M.; Ergun, R.; Giles, B. L.; Phan, T.; Baker, D. N.

    2015-12-01

    Magnetospheric Multiscale is a NASA Solar-Terrestrial Probes mission that is designed to conduct a definitive experiment on magnetic reconnection in the boundary regions of the Earth's magnetoshere. Previous missions have established that reconnection occurs somewhere on the magnetopause and in the geomagnetic tail on a nearly continuous basis. Most of the predictions that have been made about reconnection on the MHD and ion scales have been confirmed and new questions posed, particularly at smaller scales. MMS is designed to probe reconnection down to the smallest scales possible thereby allowing the assessment of electron-scale pressure gradients and inertial effects as possible important drivers of magnetic reconnection. Multipoint measurements of 3D electric and magnetic fields and plasma distributions at the required spatial resolution are required along with plasma waves, energetic particles and ion composition to open this new window on reconnection and solve its remaining mysteries. With a wide range of new and vastly improved measurements at 4 locations with separations down to 10 km, MMS is fully operational and nearing the dayside magnetopause where its exploration begins. In this paper results obtained from the first three months of magnetopause crossings will be presented.

  12. Does the Rate of Collisionless Magnetic Reconnection Depend on the Dissipation Mechanism?

    NASA Technical Reports Server (NTRS)

    Aunai, Nicolas; Hesse, Michael; Black, Carrie; Evans, Rebekah; Kuznetsova, Maria

    2012-01-01

    The importance of the electron dissipation effect on the reconnection rate is investigated in the general case of asymmetric collisionless magnetic reconnection. Contrary to the standard collisionless reconnection model, it is found that the reconnection rate, and the macroscopic evolution of the reconnecting system, crucially depend on the nature of the dissipation mechanism and that the Hall effect alone is not able to sustain fast reconnection.

  13. Asymmetric coupled interchange-ballooning dynamics during magnetic reconnection in the solar wind driven magnetosphere

    NASA Astrophysics Data System (ADS)

    Hassan, Ehab; Horton, W.; Hatch, D. R.; Agullo, O.; Muraglia, M.; Benkadda, S.; InstituteFusion Studies Collaboration; PIIM/CNRS, AMU, Marseille, France Collaboration

    2015-11-01

    Fast reconnection in the magnetosphere and the geomagnetic tail involves electron scale dynamics that includes the electron inertial scale length on the inner scale and the ion gyroradius on the outer scale. New forms of the partial differential equations for the electric and magnetic field during the fast interchange dynamics. Typical data is that of the fast reconnection with dominant electron heating reported in the Nakamura et al. from CLUSTER data. New formulas extend to smaller scales the previous simulations of Horton et al. [2007] for this event by including more electron dynamics and heating. 3D-simulations and movies of the dynamics are presented. Supported by US-DoE grant to UT and CNRS grant to AMU.

  14. Comparing Different Models for Fast Earthward Flows in the Magnetotail: Moving Flux Ropes, Unsteady Reconnection, Pressure-Depleted Plasma Bubbles, and Atypical Currents Sheets

    NASA Astrophysics Data System (ADS)

    Sitnov, M. I.; Runov, A. V.; Ohtani, S.

    2007-12-01

    The physics of fast earthward flows or BBFs, a major mechanism of bursty transfer of the plasma and magnetic flux in the terrestrial magnetotail, remains uncertain and controversial. A part of observations can be explained as signatures of earthward moving flux ropes or secondary plasmoids dragged by the earthward part a larger-scale reconnection region [Slavin et al., 2003]. The statistics of variations of the z-component of the magnetospheric magnetic field in the central plasma sheet [Ohtani et al., 2004] suggest no changes of the magnetic field topology for another group of BBFs. These observations can be explained as signatures of either unsteady reconnection, which remains located tailward of the spacecraft, or other phenomena that are connected but not identical to reconnection in its active phase. These are the plasma bubbles, flux tubes with the reduced specific entropy that may move earthward faster than the neighboring flux tubes due to the buoyancy force. However, the original model of bubbles arising from local reductions of the plasma pressure [Pontius and Wolf, 1990] also explains only a part of observations. Another part [Angelopoulos et al., 1992] reveals no reduction of the plasma pressure in BBFs. One more model, which explains both missing magnetic topology changes and no reduction of the plasma pressure [Sitnov et al., 2005] describes the bubble as a seam in the body of the tail plasma, which appears after the formation and tailward retreat of a small plasmoid, and which is composed of atypical, embedded and bifurcated thin current sheets. Signatures of such atypical current sheets have been convincingly demonstrated recently in CLUSTER observations [Runov et al., 2003]. In this presentation we elaborate the BBF models and compare them with 2001 and 2002 tail CLUSTER observations in the central plasma sheet. These include full-particle simulations of the secondary plasmoid formation in tail-like systems, two- and three- dimensional features and

  15. Reconnection on the Sun

    NASA Astrophysics Data System (ADS)

    Kohler, Susanna

    2016-05-01

    Because the Sun is so close, it makes an excellent laboratory to study processes we cant examinein distant stars. One openquestion is that of how solar magnetic fields rearrange themselves, producing the tremendous releases of energy we observe as solar flares and coronal mass ejections (CMEs).What is Magnetic Reconnection?Magnetic reconnection occurs when a magnetic field rearranges itself to move to a lower-energy state. As field lines of opposite polarity reconnect, magnetic energy is suddenly converted into thermal and kinetic energy.This processis believed to be behind the sudden releases of energy from the solar surface in the form of solar flares and CMEs. But there are many different models for how magnetic reconnection could occur in the magnetic field at the Suns surface, and we arent sure which one of these reconnection types is responsible for the events we see.Recently, however, several studies have been published presenting some of the first observational support of specific reconnection models. Taken together, these observations suggest that there are likely several different types of reconnection happening on the solar surface. Heres a closer look at two of these recent publications:A pre-eruption SDO image of a flaring region (b) looks remarkably similar to a 3D cartoon for typical breakout configuration (a). Click for a closer look! [Adapted from Chen et al. 2016]Study 1:Magnetic BreakoutLed by Yao Chen (Shandong University in China), a team of scientists has presented observations made by the Solar Dynamics Observatory (SDO) of a flare and CME event that appears to have been caused by magnetic breakout.In the magnetic breakout model, a series of loops in the Suns lower corona are confined by a surrounding larger loop structure called an arcade higher in the corona. As the lower loops push upward, reconnection occurs in the upper corona, removing the overlying, confining arcade. Without that extra confinement, the lower coronal loops expand upward

  16. The ATLAS3D project - XXV. Two-dimensional kinematic analysis of simulated galaxies and the cosmological origin of fast and slow rotators

    NASA Astrophysics Data System (ADS)

    Naab, Thorsten; Oser, L.; Emsellem, E.; Cappellari, Michele; Krajnović, D.; McDermid, R. M.; Alatalo, K.; Bayet, E.; Blitz, L.; Bois, M.; Bournaud, F.; Bureau, M.; Crocker, A.; Davies, R. L.; Davis, T. A.; de Zeeuw, P. T.; Duc, P.-A.; Hirschmann, M.; Johansson, P. H.; Khochfar, S.; Kuntschner, H.; Morganti, R.; Oosterloo, T.; Sarzi, M.; Scott, N.; Serra, P.; Ven, G. van de; Weijmans, A.; Young, L. M.

    2014-11-01

    We present a detailed two-dimensional stellar dynamical analysis of a sample of 44 cosmological hydrodynamical simulations of individual central galaxies with stellar masses of 2 × 1010 M⊙ ≲ M* ≲ 6 × 1011 M⊙. Kinematic maps of the stellar line-of-sight velocity, velocity dispersion and higher order Gauss-Hermite moments h3 and h4 are constructed for each central galaxy and for the most massive satellites. The amount of rotation is quantified using the λR-parameter. The velocity, velocity dispersion, h3 and h4 fields of the simulated galaxies show a diversity similar to observed kinematic maps of early-type galaxies in the ATLAS3D survey. This includes fast (regular), slow and misaligned rotation, hot spheroids with embedded cold disc components as well as galaxies with counter-rotating cores or central depressions in the velocity dispersion. We link the present-day kinematic properties to the individual cosmological formation histories of the galaxies. In general, major galaxy mergers have a significant influence on the rotation properties resulting in both a spin-down as well as a spin-up of the merger remnant. Lower mass galaxies with significant (≳18 per cent) in situ formation of stars since z ≈ 2, or with additional gas-rich major mergers - resulting in a spin-up - in their formation history, form elongated (ɛ ˜ 0.45) fast rotators (λR ˜ 0.46) with a clear anticorrelation of h3 and v/σ. An additional formation path for fast rotators includes gas-poor major mergers leading to a spin-up of the remnants (λR ˜ 0.43). This formation path does not result in anticorrelated h3 and v/σ. The formation histories of slow rotators can include late major mergers. If the merger is gas rich, the remnant typically is a less flattened slow rotator with a central dip in the velocity dispersion. If the merger is gas poor, the remnant is very elongated (ɛ ˜ 0.43) and slowly rotating (λR ˜ 0.11). The galaxies most consistent with the rare class of non

  17. Slip Running Reconnection in Magnetic Flux Ropes

    NASA Astrophysics Data System (ADS)

    Gekelman, W. N.; Van Compernolle, B.; Vincena, S. T.; De Hass, T.

    2012-12-01

    Magnetic flux ropes are due to helical currents and form a dense carpet of arches on the surface of the sun. Occasionally one tears loose as a coronal mass ejection and its rope structure can be detected by satellites close to the earth. Current sheets can tear into filaments and these are nothing other than flux ropes. Ropes are not static, they exert mutual ěc{J}×ěc{B} forces causing them to twist about each other and eventually merge. Kink instabilities cause them to violently smash into each other and reconnect at the point of contact. We report on experiments on two adjacent ropes done in the large plasma device (LAPD) at UCLA ( ne ˜ 1012, Te ˜ 6 eV, B0z=330G, Brope}\\cong{10G,trep=1 Hz). The currents and magnetic fields form exotic shapes with no ignorable direction and no magnetic nulls. Volumetric space-time data (70,600 spatial locations) show multiple reconnection sites with time-dependent locations. The concept of a quasi-separatrix layer (QSL), a tool to understand and visualize 3D magnetic field lines reconnection without null points is introduced. Three-dimensional measurements of the QSL derived from magnetic field data are presented. Within the QSL field lines that start close to one another rapidly diverge as they pass through one or more reconnection regions. The motion of magnetic field lines are traced as reconnection proceeds and they are observed to slip through the regions of space where the QSL is largest. As the interaction proceeds we double the current in the ropes. This accompanied by intense heating as observed in uv light and plasma flows measured by Mach probes. The interaction of the ropes is clearly seen by vislaulizng magnetic field data , as well as in images from a fast framing camera. Work supported by the Dept. of Energy and The National Science Foundation, done at the Basic Plasma Science Facility at UCLA.Magnetic Field lines (measured) of three flux ropes and the plasma currents associated with them

  18. Diffusion of magnetic field via turbulent reconnection

    NASA Astrophysics Data System (ADS)

    Santos de Lima, Reinaldo; Lazarian, Alexander; de Gouveia Dal Pino, Elisabete M.; Cho, Jungyeon

    2010-05-01

    The diffusion of astrophysical magnetic fields in conducting fluids in the presence of turbulence depends on whether magnetic fields can change their topology via reconnection in highly conducting media. Recent progress in understanding fast magnetic reconnection in the presence of turbulence is reassuring that the magnetic field behavior in computer simulations and turbulent astrophysical environments is similar, as far as magnetic reconnection is concerned. This makes it meaningful to perform MHD simulations of turbulent flows in order to understand the diffusion of magnetic field in astrophysical environments. Our studies of magnetic field diffusion in turbulent medium reveal interesting new phenomena. First of all, our 3D MHD simulations initiated with anti-correlating magnetic field and gaseous density exhibit at later times a de-correlation of the magnetic field and density, which corresponds well to the observations of the interstellar media. While earlier studies stressed the role of either ambipolar diffusion or time-dependent turbulent fluctuations for de-correlating magnetic field and density, we get the effect of permanent de-correlation with one fluid code, i.e. without invoking ambipolar diffusion. In addition, in the presence of gravity and turbulence, our 3D simulations show the decrease of the magnetic flux-to-mass ratio as the gaseous density at the center of the gravitational potential increases. We observe this effect both in the situations when we start with equilibrium distributions of gas and magnetic field and when we follow the evolution of collapsing dynamically unstable configurations. Thus the process of turbulent magnetic field removal should be applicable both to quasi-static subcritical molecular clouds and cores and violently collapsing supercritical entities. The increase of the gravitational potential as well as the magnetization of the gas increases the segregation of the mass and magnetic flux in the saturated final state of the

  19. Crustal thickness from 3D MCS data collected over the fast-spreading East Pacific Rise at 9°50'N

    NASA Astrophysics Data System (ADS)

    Aghaei, O.; Nedimović, M. R.; Canales, J.; Carton, H. D.; Carbotte, S. M.; Mutter, J. C.

    2011-12-01

    We compute, analyze and present crustal thickness variations for a section of the fast-spreading East Pacific Rise (EPR). The area of 3D coverage is between 9°38'N and 9°58' N (~1000 km2), where the documented eruptions of 1990-91 and 2005-06 occurred. The crustal thickness is computed by depth converting the two-way reflection travel times from the seafloor to the Moho. The seafloor and Moho reflections are picked on the migrated stack volume produced from the 3D multichannel seismic (MCS) data collected on R/V Marcus G. Langseth in summer of 2008 during cruise MGL0812. The crustal velocities used for depth conversion were computed by Canales et al. (2003; 2011) by simultaneous inversion of seismic refractions and wide-angle Moho reflection traveltimes from four ridge-parallel and one ridge-perpendicular ocean bottom seismometer (OBS) profile for which data were collected during the 1998 UNDERSHOOT experiment. The MCS data analysis included 1D and 2D filtering, offset-dependent spherical divergence correction, surface-consistent amplitude correction, common midpoint (CMP) sort with flex binning, velocity analysis, normal moveout, and CMP stretch mute. The poststack processing includes seafloor multiple mute and 3D Kirchhoff poststack time migration. Here we use the crustal thickness and Moho seismic signature variations to detail their relationship with ridge segmentation, crustal age, bathymetry, and on- and off-axis magmatism. On the western flank (Pacific plate) from 9°41' to 9°48', the Moho reflection is strong. From 9°48' to 9°52', the Moho reflection varies from moderate to weak and disappears from ~3 km to ~9 km from the ridge axis. On the eastern flank (Cocos plate) from 9°41' to 9°51', the Moho reflection varies from strong to moderate. From 9°51' to 9°54' the Moho reflection varies from moderate to weak and disappears beneath a region ~3 km to ~9 km from the axis. On the Cocos plate, across-axis crustal thickness variations (5.5-6.2 km) show a

  20. Slipping magnetic reconnection in coronal loops.

    PubMed

    Aulanier, Guillaume; Golub, Leon; Deluca, Edward E; Cirtain, Jonathan W; Kano, Ryouhei; Lundquist, Loraine L; Narukage, Noriyuki; Sakao, Taro; Weber, Mark A

    2007-12-01

    Magnetic reconnection of solar coronal loops is the main process that causes solar flares and possibly coronal heating. In the standard model, magnetic field lines break and reconnect instantaneously at places where the field mapping is discontinuous. However, another mode may operate where the magnetic field mapping is continuous but shows steep gradients: The field lines may slip across each other. Soft x-ray observations of fast bidirectional motions of coronal loops, observed by the Hinode spacecraft, support the existence of this slipping magnetic reconnection regime in the Sun's corona. This basic process should be considered when interpreting reconnection, both on the Sun and in laboratory-based plasma experiments. PMID:18063789

  1. Reconnection on the Sun

    NASA Astrophysics Data System (ADS)

    Kohler, Susanna

    2016-05-01

    Because the Sun is so close, it makes an excellent laboratory to study processes we cant examinein distant stars. One openquestion is that of how solar magnetic fields rearrange themselves, producing the tremendous releases of energy we observe as solar flares and coronal mass ejections (CMEs).What is Magnetic Reconnection?Magnetic reconnection occurs when a magnetic field rearranges itself to move to a lower-energy state. As field lines of opposite polarity reconnect, magnetic energy is suddenly converted into thermal and kinetic energy.This processis believed to be behind the sudden releases of energy from the solar surface in the form of solar flares and CMEs. But there are many different models for how magnetic reconnection could occur in the magnetic field at the Suns surface, and we arent sure which one of these reconnection types is responsible for the events we see.Recently, however, several studies have been published presenting some of the first observational support of specific reconnection models. Taken together, these observations suggest that there are likely several different types of reconnection happening on the solar surface. Heres a closer look at two of these recent publications:A pre-eruption SDO image of a flaring region (b) looks remarkably similar to a 3D cartoon for typical breakout configuration (a). Click for a closer look! [Adapted from Chen et al. 2016]Study 1:Magnetic BreakoutLed by Yao Chen (Shandong University in China), a team of scientists has presented observations made by the Solar Dynamics Observatory (SDO) of a flare and CME event that appears to have been caused by magnetic breakout.In the magnetic breakout model, a series of loops in the Suns lower corona are confined by a surrounding larger loop structure called an arcade higher in the corona. As the lower loops push upward, reconnection occurs in the upper corona, removing the overlying, confining arcade. Without that extra confinement, the lower coronal loops expand upward

  2. Fast, purely growing collisionless reconnection as an eigenfunction problem related to but not involving linear whistler waves

    SciTech Connect

    Bellan, Paul M.

    2014-10-15

    If either finite electron inertia or finite resistivity is included in 2D magnetic reconnection, the two-fluid equations become a pair of second-order differential equations coupling the out-of-plane magnetic field and vector potential to each other to form a fourth-order system. The coupling at an X-point is such that out-of-plane even-parity electric and odd-parity magnetic fields feed off each other to produce instability if the scale length on which the equilibrium magnetic field changes is less than the ion skin depth. The instability growth rate is given by an eigenvalue of the fourth-order system determined by boundary and symmetry conditions. The instability is a purely growing mode, not a wave, and has growth rate of the order of the whistler frequency. The spatial profile of both the out-of-plane electric and magnetic eigenfunctions consists of an inner concave region having extent of the order of the electron skin depth, an intermediate convex region having extent of the order of the equilibrium magnetic field scale length, and a concave outer exponentially decaying region. If finite electron inertia and resistivity are not included, the inner concave region does not exist and the coupled pair of equations reduces to a second-order differential equation having non-physical solutions at an X-point.

  3. Fast and Broadband Signal Integrity Analysis of Multiple Vias in Heterogeneous 3D IC and Die-Level Packaging by Using Generalized Foldy-Lax Scattering Method

    NASA Astrophysics Data System (ADS)

    Chang, Xin

    This dissertation proposal is concerned with the use of fast and broadband full-wave electromagnetic methods for modeling high speed interconnects (e.g, vertical vias and horizontal traces) and passive components (e.g, decoupling capacitors) for structures of PCB and packages, in 3D IC, Die-level packaging and SIW based devices, to effectively modeling the designs signal integrity (SI) and power integrity (PI) aspects. The main contributions finished in this thesis is to create a novel methodology, which hybridizes the Foldy-Lax multiple scattering equations based fast full wave method, method of moment (MoM) based 1D technology, modes decoupling based geometry decomposition and cavity modes expansions, to model and simulate the electromagnetic scattering effects for the irregular power/ground planes, multiple vias and traces, for fast and accurate analysis of link level simulation on multilayer electronic structures. For the modeling details, the interior massively-coupled multiple vias problem is modeled most-analytically by using the Foldy-Lax multiple scattering equations. The dyadic Green's functions of the magnetic field are expressed in terms of waveguide modes in the vertical direction and vector cylindrical wave expansions or cavity modes expansions in the horizontal direction, combined with 2D MoM realized by 1D technology. For the incident field of the case of vias in the arbitrarily shaped antipad in finite large cavity/waveguide, the exciting and scattering field coefficients are calculated based on the transformation which converts surface integration of magnetic surface currents in antipad into 1D line integration of surface charges on the vias and on the ground plane. Geometry decomposition method is applied to model and integrate both the vertical and horizontal interconnects/traces in arbitrarily shaped power/ground planes. Moreover, a new form of multiple scattering equations is derived for solving coupling effects among mixed metallic

  4. Laboratory Reconnection Experiments - heating and particle acceleration

    NASA Astrophysics Data System (ADS)

    Ono, Yasushi

    Recent laboratory merging/ reconnection experiments have solved a number of key physics of magnetic reconnection: 1) reconnection heating/ acceleration, 2) fast reconnection mechanisms, 3) plasmoid reconnection, 4) non-steady reconnection and 5) non-thermal particle acceleration using new kinetic interpretations. Especially, significant ion temperatures 1.2keV were documented in the world-largest tokamak merging experiment: MAST after detailed 2D elucidation of ion and electron heating characteristics in TS-3 and 4 merging experiments. The measured 2D contours of ion and electron temperatures in TS-3, 4 and MAST reveal ion heating in the downstream by reconnection outflow and electron heating around the X-point by ohmic heating of current sheet. Their detailed heating mechanisms were further investigated by comparing those results with particle simulations developed by NIFS. The ion acceleration mechanism is mostly parallel acceleration by reconnection electric field and partly perpendicular acceleration by electrostatic potential. The fast shock and ion viscosity are the major dumping (heating) mechanisms for the accelerated ions. We successfully applied the reconnection heating - typically 10-50MW to the high-beta spherical tokamak formation and heating. This paper will review major progresses in those international and interdisciplinary merging tokamak experiments.

  5. Indeterminacy and instability in Petschek reconnection

    SciTech Connect

    Forbes, Terry G.; Priest, Eric R.; Seaton, Daniel B.; Litvinenko, Yuri E.

    2013-05-15

    We explain two puzzling aspects of Petschek's model for fast reconnection. One is its failure to occur in plasma simulations with uniform resistivity. The other is its inability to provide anything more than an upper limit for the reconnection rate. We have found that previously published analytical solutions based on Petschek's model are structurally unstable if the electrical resistivity is uniform. The structural instability is associated with the presence of an essential singularity at the X-line that is unphysical. By requiring that such a singularity does not exist, we obtain a formula that predicts a specific rate of reconnection. For uniform resistivity, reconnection can only occur at the slow, Sweet-Parker rate. For nonuniform resistivity, reconnection can occur at a much faster rate provided that the resistivity profile is not too flat near the X-line. If this condition is satisfied, then the scale length of the nonuniformity determines the reconnection rate.

  6. Anti-parallel and Component Reconnection at the Magnetopause

    NASA Astrophysics Data System (ADS)

    Trattner, K. J.; Mulcock, J. S.; Petrinec, S. M.; Fuselier, S. A.

    2007-05-01

    Reconnection at the magnetopause is clearly the dominant mechanism by which magnetic fields in different regions change topology to create open magnetic field lines that allow energy and momentum to flow into the magnetosphere. Observations and data analysis methods have reached the maturity to address one of the major outstanding questions about magnetic reconnection: The location of the reconnection site. There are two scenarios discussed in the literature, a) anti-parallel reconnection where shear angles between the magnetospheric field and the IMF are near 180 degrees, and b) component reconnection where shear angles are as low as 50 degrees. One popular component reconnection model is the tilted neutral line model. Both reconnection scenarios have a profound impact on the location of the X-line and plasma transfer into the magnetosphere. We have analyzed 3D plasma measurements observed by the Polar satellite in the northern hemisphere cusp region during southward IMF conditions. These 3D plasma measurements are used to estimate the distance to the reconnection line by using the low-velocity cutoff technique for precipitating and mirrored magnetosheath populations in the cusp. The calculated distances are subsequently traced back along geomagnetic field lines to the expected reconnection sites at the magnetopause. The Polar survey of northern cusp passes reveal that both reconnection scenarios occur at the magnetopause. The IMF clock angle appears to be the dominant parameter in causing either the anti-parallel or the tilted X-line reconnection scenario.

  7. Multiscale modeling of magnetospheric reconnection

    NASA Astrophysics Data System (ADS)

    Kuznetsova, M. M.; Hesse, M.; RastäTter, L.; Taktakishvili, A.; Toth, G.; de Zeeuw, D. L.; Ridley, A.; Gombosi, T. I.

    2007-10-01

    In our efforts to bridge the gap between small-scale kinetic modeling and global simulations, we introduced an approach that allows to quantify the interaction between large-scale global magnetospheric dynamics and microphysical processes in diffusion regions near reconnection sites. We use the global MHD code BATS-R-US and replace an ad hoc anomalous resistivity often employed by global MHD models with a physically motivated dissipation model. The primary kinetic mechanism controlling the dissipation in the diffusion region in the vicinity of the reconnection site is incorporated into the MHD description in terms of nongyrotropic corrections to the induction equation. We developed an algorithm to search for reconnection sites in north-south symmetric magnetotail. Spatial scales of the diffusion region and magnitude of the reconnection electric field are calculated consistently using local MHD plasma and field parameters. The locations of the reconnection sites are constantly updated during the simulations. To clarify the role of nongyrotropic effects in the diffusion region on the global magnetospheric dynamics, we perform simulations with steady southward interplanetary magnetic field driving of the magnetosphere. Ideal MHD simulations with magnetic reconnection supported by numerical resistivity often produce quasi-steady configuration with almost stationary near-Earth neutral line (NENL). Simulations with nongyrotropic corrections demonstrate dynamic quasi-periodic response to the steady driving conditions. Fast magnetotail reconnection supported by nongyrotropic effects results in tailward retreat of the reconnection site with average speed of the order of 100 km/s followed by a formation of a new NENL in the near-Earth thin current sheet. This approach allowed to model for the first time loading/unloading cycle frequently observed during extended periods of steady low-mach-number solar wind with southward interplanetary magnetic field.

  8. The reconnection site of temporal cusp structures

    NASA Astrophysics Data System (ADS)

    Trattner, K. J.; Fuselier, S. A.; Petrinec, S. M.; Yeoman, T. K.; Escoubet, C. P.; Reme, H.

    2008-07-01

    The strong precipitating particle flux in the cusp regions is the consequence of magnetic reconnection between the interplanetary magnetic field and the geomagnetic field. Magnetic reconnection is thought to be the dominant process for mass, energy, and momentum transfer from the magnetosheath into the magnetosphere. Observations of downward precipitating cusp ions by polar orbiting satellites are instrumental in unlocking many questions about magnetic reconnection, e.g., their spatial and temporal nature and the location of the reconnection site at the magnetopause. In this study we combine cusp observations of structures in the precipitating ion-energy dispersion by the Cluster satellites with Super Dual Auroral Radar Network radar observations to distinguish between the temporal and spatial magnetic reconnection processes at the magnetopause. The location of the cusp structures relative to the convection cells is interpreted as a temporal phenomenon caused by a change in the reconnection rate at the magnetopause. The 3-D plasma observations of the Cluster Ion Spectrometry instruments onboard the Cluster spacecraft also provide the means to estimate the location of the reconnection site. While an earlier study of a spatial cusp structure event revealed bifurcated reconnection locations in different hemispheres as origins for the precipitating ions creating the cusp structures, the same method applied to the temporal cusp structures in this study shows only a single tilted reconnection line close to the subsolar point. Tracing the distance to the reconnection site provides not only the location of the reconnection line but can also be used to distinguish between spatial and temporal cusp structures.

  9. Global Simulations of Magnetotail Reconnection

    NASA Technical Reports Server (NTRS)

    Kuznetsova, M. M.; Hesse, M.; Rastatter, L.; Toth, G.; Gombosi, T.

    2007-01-01

    There is a growing number of observational evidences of dynamic quasi-periodical magnetosphere response to continuously southward interplan etary magnetic field (IMF). However, traditional global MHD simulatio ns with magnetic reconnection supported by numerical dissipation and ad hoc anomalous resistivity driven by steady southward IMF often prod uce only quasi-steady configurations with almost stationary near-eart h neutral line. This discrepancy can be explained by the assumption that global MHD simulations significantly underestimate the reconnectio n rate in the magnetotail during substorm expansion phase. Indeed, co mparative studies of magnetic reconnection in small scale geometries demonstrated that traditional resistive MHD did not produce the fast r econnection rates observed in kinetic simulations. The major approxim ation of the traditional MHD approach is an isotropic fluid assumption) with zero off-diagonal pressure tensor components. The approximatio n, however, becomes invalid in the diffusion region around the reconn ection site where ions become unmagnetized and experience nongyrotropic behaviour. Deviation from gyrotropy in particle distribution functi on caused by kinetic effects manifests itself in nongyrotropic pressu re tensor with nonzero off-diagonal components. We use the global MHD code BATS-R-US and replace ad hoc parameters such as "critical curren t density" and "anomalous resistivity" with a physically motivated di ssipation model. The key element of the approach is to identify diffusion regions where the isotropic fluid MHD approximation is not applic able. We developed an algorithm that searches for locations of magnet otail reconnection sites. The algorithm takes advantage of block-based domain-decomposition technique employed by the BATS-R-US. Boundaries of the diffusion region around each reconnection site are estimated from the gyrotropic orbit threshold condition, where the ion gyroradius is equal to the distance to the

  10. Electron nongyrotropy in the context of collisionless magnetic reconnection

    SciTech Connect

    Aunai, Nicolas; Hesse, Michael; Kuznetsova, Maria

    2013-09-15

    Collisionless magnetized plasmas have the tendency to isotropize their velocity distribution function around the local magnetic field direction, i.e., to be gyrotropic, unless some spatial and/or temporal fluctuations develop at the particle gyroscales. Electron gyroscale inhomogeneities are well known to develop during the magnetic reconnection process. Nongyrotropic electron velocity distribution functions have been observed to play a key role in the dissipative process breaking the field line connectivity. In this paper, we present a new method to quantify the deviation of a particle population from gyrotropy. The method accounts for the full 3D shape of the distribution and its analytical formulation allows fast numerical computation. Regions associated with a significant degree of nongyrotropy are shown, as well as the kinetic origin of the nongyrotropy and the fluid signature it is associated with. Using the result of 2.5D Particle-In-Cell simulations of magnetic reconnection in symmetric and asymmetric configurations, it is found that neither the reconnection site nor the topological boundaries are generally associated with a maximized degree of nongyrotropy. Nongyrotropic regions do not correspond to a specific fluid behavior as equivalent nongyrotropy is found to extend over the electron dissipation region as well as in non-dissipative diamagnetic drift layers. The localization of highly nongyrotropic regions in numerical models and their correlation with other observable quantities can, however, improve the characterization of spatial structures explored by spacecraft missions.

  11. Turbulent Reconnection Rates from Cluster Observations in the Magneto sheath

    NASA Technical Reports Server (NTRS)

    Wendel, Deirdre

    2011-01-01

    The role of turbulence in producing fast reconnection rates is an important unresolved question. Scant in situ analyses exist. We apply multiple spacecraft techniques to a case of nonlinear turbulent reconnection in the magnetosheath to test various theoretical results for turbulent reconnection rates. To date, in situ estimates of the contribution of turbulence to reconnection rates have been calculated from an effective electric field derived through linear wave theory. However, estimates of reconnection rates based on fully nonlinear turbulence theories and simulations exist that are amenable to multiple spacecraft analyses. Here we present the linear and nonlinear theories and apply some of the nonlinear rates to Cluster observations of reconnecting, turbulent current sheets in the magnetos heath. We compare the results to the net reconnection rate found from the inflow speed. Ultimately, we intend to test and compare linear and nonlinear estimates of the turbulent contribution to reconnection rates and to measure the relative contributions of turbulence and the Hall effect.

  12. Turbulent Reconnection Rates from Cluster Observations in the Magnetosheath

    NASA Technical Reports Server (NTRS)

    Wendel, Deirdre

    2011-01-01

    The role of turbulence in producing fast reconnection rates is an important unresolved question. Scant in situ analyses exist. We apply multiple spacecraft techniques to a case of nonlinear turbulent reconnection in the magnetosheath to test various theoretical results for turbulent reconnection rates. To date, in situ estimates of the contribution of turbulence to reconnection rates have been calculated from an effective electric field derived through linear wave theory. However, estimates of reconnection rates based on fully nonlinear turbulence theories and simulations exist that are amenable to multiple spacecraft analyses. Here we present the linear and nonlinear theories and apply some of the nonlinear rates to Cluster observations of reconnecting, turbulent current sheets in the magnetosheath. We compare the results to the net reconnection rate found from the inflow speed. Ultimately, we intend to test and compare linear and nonlinear estimates of the turbulent contribution to reconnection rates and to measure the relative contributions of turbulence and the Hall effect.

  13. Fast and robust 3D T1 mapping using spiral encoding and steady RF excitation at 7 T: application to cardiac manganese enhanced MRI (MEMRI) in mice.

    PubMed

    Castets, Charles R; Ribot, Emeline J; Lefrançois, William; Trotier, Aurélien J; Thiaudière, Eric; Franconi, Jean-Michel; Miraux, Sylvain

    2015-07-01

    Mapping longitudinal relaxation times in 3D is a promising quantitative and non-invasive imaging tool to assess cardiac remodeling. Few methods are proposed in the literature allowing us to perform 3D T1 mapping. These methods often require long scan times and use a low number of 3D images to calculate T1 . In this project, a fast 3D T1 mapping method using a stack-of-spirals sampling scheme and regular RF pulse excitation at 7 T is presented. This sequence, combined with a newly developed fitting procedure, allowed us to quantify T1 of the whole mouse heart with a high spatial resolution of 208 × 208 × 315 µm(3) in 10-12 min acquisition time. The sensitivity of this method for measuring T1 variations was demonstrated on mouse hearts after several injections of manganese chloride (doses from 25 to 150 µmol kg(-1) ). T1 values were measured in vivo in both pre- and post-contrast experiments. This protocol was also validated on ischemic mice to demonstrate its efficiency to visualize tissue damage induced by a myocardial infarction. This study showed that combining spiral gradient shape and steady RF excitation enabled fast and robust 3D T1 mapping of the entire heart with a high spatial resolution. PMID:25989986

  14. The relation between reconnected flux, the parallel electric field, and the reconnection rate in a three-dimensional kinetic simulation of magnetic reconnection

    SciTech Connect

    Wendel, D. E.; Olson, D. K.; Hesse, M.; Kuznetsova, M.; Adrian, M. L.; Aunai, N.; Karimabadi, H.; Daughton, W.

    2013-12-15

    We investigate the distribution of parallel electric fields and their relationship to the location and rate of magnetic reconnection in a large particle-in-cell simulation of 3D turbulent magnetic reconnection with open boundary conditions. The simulation's guide field geometry inhibits the formation of simple topological features such as null points. Therefore, we derive the location of potential changes in magnetic connectivity by finding the field lines that experience a large relative change between their endpoints, i.e., the quasi-separatrix layer. We find a good correspondence between the locus of changes in magnetic connectivity or the quasi-separatrix layer and the map of large gradients in the integrated parallel electric field (or quasi-potential). Furthermore, we investigate the distribution of the parallel electric field along the reconnecting field lines. We find the reconnection rate is controlled by only the low-amplitude, zeroth and first–order trends in the parallel electric field while the contribution from fluctuations of the parallel electric field, such as electron holes, is negligible. The results impact the determination of reconnection sites and reconnection rates in models and in situ spacecraft observations of 3D turbulent reconnection. It is difficult through direct observation to isolate the loci of the reconnection parallel electric field amidst the large amplitude fluctuations. However, we demonstrate that a positive slope of the running sum of the parallel electric field along the field line as a function of field line length indicates where reconnection is occurring along the field line.

  15. The relation between reconnected flux, the parallel electric field, and the reconnection rate in a three-dimensional kinetic simulation of magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Wendel, D. E.; Olson, D. K.; Hesse, M.; Aunai, N.; Kuznetsova, M.; Karimabadi, H.; Daughton, W.; Adrian, M. L.

    2013-12-01

    We investigate the distribution of parallel electric fields and their relationship to the location and rate of magnetic reconnection in a large particle-in-cell simulation of 3D turbulent magnetic reconnection with open boundary conditions. The simulation's guide field geometry inhibits the formation of simple topological features such as null points. Therefore, we derive the location of potential changes in magnetic connectivity by finding the field lines that experience a large relative change between their endpoints, i.e., the quasi-separatrix layer. We find a good correspondence between the locus of changes in magnetic connectivity or the quasi-separatrix layer and the map of large gradients in the integrated parallel electric field (or quasi-potential). Furthermore, we investigate the distribution of the parallel electric field along the reconnecting field lines. We find the reconnection rate is controlled by only the low-amplitude, zeroth and first-order trends in the parallel electric field while the contribution from fluctuations of the parallel electric field, such as electron holes, is negligible. The results impact the determination of reconnection sites and reconnection rates in models and in situ spacecraft observations of 3D turbulent reconnection. It is difficult through direct observation to isolate the loci of the reconnection parallel electric field amidst the large amplitude fluctuations. However, we demonstrate that a positive slope of the running sum of the parallel electric field along the field line as a function of field line length indicates where reconnection is occurring along the field line.

  16. The "Newton Challenge": Properties of Forced Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Pritchett, P. L.

    2005-05-01

    Inspired by the observations of thin (ion-scale) current sheets at important magnetospheric boundaries, the study of the properties of thin current sheets has become very popular in recent years. Most of these investigations, however, have ignored the question of how the sheets are formed. Instead, usually a simple Harris-type current sheet is postulated at the outset, and the resulting behavior is then determined. Recently, a collaborative effort, dubbed the "Newton Challenge" and involving J. Birn, K. Galsgaard, M. Hesse, M. Hoshino, J. Huba, G. Lapenta, P.~L. Pritchett, K. Schindler, L. Yin, J. Büchner, T. Neukirch, and E.~R. Priest, was begun to investigate the transition from thicker to thin current sheets that can occur as a result of magnetopause deformations imposed by the solar wind. A standard 2-D model problem in which current sheet thinning was forced by imposing a finite deformation of the field above and below the current sheet was studied by a variety of physical models ranging from resistive MHD to fully kinetic particle models. The aim was to determine whether differences would arise between the fluid and kinetic treatments that might affect the onset of magnetic reconnection. The initial results indicate that full-particle, hybrid, and Hall-MHD models lead to fast reconnection and similar final states despite differences in energy transfer and dissipation. Resistive MHD simulations show reduced reconnection rates that depend on the magnitude of the resistivity. These results will be reviewed, and additional features of forced reconnection, including continuous forcing, open boundaries, the presence of a normal field component, and 3-D effects, will be discussed.

  17. R2OBBIE-3D, a Fast Robotic High-Resolution System for Quantitative Phenotyping of Surface Geometry and Colour-Texture

    PubMed Central

    Manukyan, Liana; Milinkovitch, Michel C.

    2015-01-01

    While recent imaging techniques provide insights into biological processes from the molecular to the cellular scale, phenotypes at larger scales remain poorly amenable to quantitative analyses. For example, investigations of the biophysical mechanisms generating skin morphological complexity and diversity would greatly benefit from 3D geometry and colour-texture reconstructions. Here, we report on R2OBBIE-3D, an integrated system that combines a robotic arm, a high-resolution digital colour camera, an illumination basket of high-intensity light-emitting diodes and state-of-the-art 3D-reconstruction approaches. We demonstrate that R2OBBIE generates accurate 3D models of biological objects between 1 and 100 cm, makes multiview photometric stereo scanning possible in practical processing times, and enables the capture of colour-texture and geometric resolutions better than 15 μm without the use of magnifying lenses. R2OBBIE has the potential to greatly improve quantitative analyses of phenotypes in addition to providing multiple new applications in, e.g., biomedical science. PMID:26039509

  18. R(2)OBBIE-3D, a Fast Robotic High-Resolution System for Quantitative Phenotyping of Surface Geometry and Colour-Texture.

    PubMed

    Martins, António F; Bessant, Michel; Manukyan, Liana; Milinkovitch, Michel C

    2015-01-01

    While recent imaging techniques provide insights into biological processes from the molecular to the cellular scale, phenotypes at larger scales remain poorly amenable to quantitative analyses. For example, investigations of the biophysical mechanisms generating skin morphological complexity and diversity would greatly benefit from 3D geometry and colour-texture reconstructions. Here, we report on R(2)OBBIE-3D, an integrated system that combines a robotic arm, a high-resolution digital colour camera, an illumination basket of high-intensity light-emitting diodes and state-of-the-art 3D-reconstruction approaches. We demonstrate that R(2)OBBIE generates accurate 3D models of biological objects between 1 and 100 cm, makes multiview photometric stereo scanning possible in practical processing times, and enables the capture of colour-texture and geometric resolutions better than 15 μm without the use of magnifying lenses. R(2)OBBIE has the potential to greatly improve quantitative analyses of phenotypes in addition to providing multiple new applications in, e.g., biomedical science. PMID:26039509

  19. Optical cone beam tomography of Cherenkov-mediated signals for fast 3D dosimetry of x-ray photon beams in water

    SciTech Connect

    Glaser, Adam K. E-mail: Brian.W.Pogue@dartmouth.edu; Andreozzi, Jacqueline M.; Zhang, Rongxiao; Pogue, Brian W. E-mail: Brian.W.Pogue@dartmouth.edu; Gladstone, David J.

    2015-07-15

    Purpose: To test the use of a three-dimensional (3D) optical cone beam computed tomography reconstruction algorithm, for estimation of the imparted 3D dose distribution from megavoltage photon beams in a water tank for quality assurance, by imaging the induced Cherenkov-excited fluorescence (CEF). Methods: An intensified charge-coupled device coupled to a standard nontelecentric camera lens was used to tomographically acquire two-dimensional (2D) projection images of CEF from a complex multileaf collimator (MLC) shaped 6 MV linear accelerator x-ray photon beam operating at a dose rate of 600 MU/min. The resulting projections were used to reconstruct the 3D CEF light distribution, a potential surrogate of imparted dose, using a Feldkamp–Davis–Kress cone beam back reconstruction algorithm. Finally, the reconstructed light distributions were compared to the expected dose values from one-dimensional diode scans, 2D film measurements, and the 3D distribution generated from the clinical Varian ECLIPSE treatment planning system using a gamma index analysis. A Monte Carlo derived correction was applied to the Cherenkov reconstructions to account for beam hardening artifacts. Results: 3D light volumes were successfully reconstructed over a 400 × 400 × 350 mm{sup 3} volume at a resolution of 1 mm. The Cherenkov reconstructions showed agreement with all comparative methods and were also able to recover both inter- and intra-MLC leaf leakage. Based upon a 3%/3 mm criterion, the experimental Cherenkov light measurements showed an 83%–99% pass fraction depending on the chosen threshold dose. Conclusions: The results from this study demonstrate the use of optical cone beam computed tomography using CEF for the profiling of the imparted dose distribution from large area megavoltage photon beams in water.

  20. Optical cone beam tomography of Cherenkov-mediated signals for fast 3D dosimetry of x-ray photon beams in water

    PubMed Central

    Glaser, Adam K.; Andreozzi, Jacqueline M.; Zhang, Rongxiao; Pogue, Brian W.; Gladstone, David J.

    2015-01-01

    Purpose: To test the use of a three-dimensional (3D) optical cone beam computed tomography reconstruction algorithm, for estimation of the imparted 3D dose distribution from megavoltage photon beams in a water tank for quality assurance, by imaging the induced Cherenkov-excited fluorescence (CEF). Methods: An intensified charge-coupled device coupled to a standard nontelecentric camera lens was used to tomographically acquire two-dimensional (2D) projection images of CEF from a complex multileaf collimator (MLC) shaped 6 MV linear accelerator x-ray photon beam operating at a dose rate of 600 MU/min. The resulting projections were used to reconstruct the 3D CEF light distribution, a potential surrogate of imparted dose, using a Feldkamp–Davis–Kress cone beam back reconstruction algorithm. Finally, the reconstructed light distributions were compared to the expected dose values from one-dimensional diode scans, 2D film measurements, and the 3D distribution generated from the clinical Varian ECLIPSE treatment planning system using a gamma index analysis. A Monte Carlo derived correction was applied to the Cherenkov reconstructions to account for beam hardening artifacts. Results: 3D light volumes were successfully reconstructed over a 400 × 400 × 350 mm3 volume at a resolution of 1 mm. The Cherenkov reconstructions showed agreement with all comparative methods and were also able to recover both inter- and intra-MLC leaf leakage. Based upon a 3%/3 mm criterion, the experimental Cherenkov light measurements showed an 83%–99% pass fraction depending on the chosen threshold dose. Conclusions: The results from this study demonstrate the use of optical cone beam computed tomography using CEF for the profiling of the imparted dose distribution from large area megavoltage photon beams in water. PMID:26133613

  1. Reconnection in thin current sheets

    NASA Astrophysics Data System (ADS)

    Tenerani, Anna; Velli, Marco; Pucci, Fulvia; Rappazzo, A. F.

    2016-05-01

    It has been widely believed that reconnection is the underlying mechanism of many explosive processes observed both in nature and laboratory, but the question of reconnection speed and initial trigger have remained mysterious. How is fast magnetic energy release triggered in high Lundquist (S) and Reynolds (R) number plasmas?It has been shown that a tearing mode instability can grow on an ideal timescale, i.e., independent from the the Lundquist number, once the current sheet thickness becomes thin enough, or rather the inverse aspect ratio a/L reaches a scale a/L~S-1/3. As such, the latter provides a natural, critical threshold for current sheets that can be formed in nature before they disrupt in a few Alfvén time units. Here we discuss the transition to fast reconnection extended to simple viscous and kinetic models and we propose a possible scenario for the transition to explosive reconnection in high-Lundquist number plasmas, that we support with fully nonlinear numerical MHD simulations of a collapsing current sheet.

  2. Study of Electron Acceleration and Multiple Dipolarization Fronts in 3D kinetic models

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Ashour-Abdalla, Maha; Walker, Raymond; El-Alaoui, Mostafa

    2014-05-01

    The THEMIS mission encountered a depolarization front (DF) during a magnetotail crossing in the interval 035600 - 035900 UT on February 15, 2008 [1]. We present the results of an innovative investigative approach: we combine a global MHD model of the full Earth environment with a local PIC simulation. The global MHD view is provided on the UCLA model applied to the conditions for the interval of interest on Feb 15, 2008. At the specific time of 034800UT, a reconnection site first appear at about x=-15RE, y=4RE. We then use this specific MHD state as the initial setup for a fully kinetic PIC simulation, performed with the iPic3D code [2]. We consider a one way coupling where the MHD state is used as initial state and boundary conditions for the kinetic study [3]. In the present case, the time span of the kinetic simulation is short form the perspective of the global MHD simulation and does not require a full coupling where the MHD then process the information received back from the kinetic run [4]. The fields and particles are advanced self-consistently from the MHD state using a completely kinetic treatment. Many features missed by the MHD model emerge. Most notably a fast reconnection pattern develops and an unsteady reconnection process develops. The typical signatures of fast kinetic reconnection (Hall field) are observed and particle acceleration is obtained self consistently in the fields generated by the PIC simulation. The focus of the presentation will be the mechanisms of unsteady reconnection leading to multiple DFs. We observe intense wave activity propagating off the separatrices. We conduct a spectral analysis to isolate the different wave components in the lower hybrid and whistler regime. The unsteady reconnection and multiple DFs are also analysed in their impact on the energy transfer. We track the conversion of magnetic energy to particle energy and Poynting flux. The processes observed in the simulation are then compared with in situ THEMIS data

  3. Reconnection of Magnetic Fields

    NASA Technical Reports Server (NTRS)

    1984-01-01

    Spacecraft observations of steady and nonsteady reconnection at the magnetopause are reviewed. Computer simulations of three-dimensional reconnection in the geomagnetic tail are discussed. Theoretical aspects of the energization of particles in current sheets and of the microprocesses in the diffusion region are presented. Terrella experiments in which magnetospheric reconnection is simulated at both the magnetopause and in the tail are described. The possible role of reconnection in the evolution of solar magnetic fields and solar flares is discussed. A two-dimensional magnetohydrodynamic computer simulation of turbulent reconnection is examined. Results concerning reconnection in Tokamak devices are also presented.

  4. The ATLAS3D project - III. A census of the stellar angular momentum within the effective radius of early-type galaxies: unveiling the distribution of fast and slow rotators

    NASA Astrophysics Data System (ADS)

    Emsellem, Eric; Cappellari, Michele; Krajnović, Davor; Alatalo, Katherine; Blitz, Leo; Bois, Maxime; Bournaud, Frédéric; Bureau, Martin; Davies, Roger L.; Davis, Timothy A.; de Zeeuw, P. T.; Khochfar, Sadegh; Kuntschner, Harald; Lablanche, Pierre-Yves; McDermid, Richard M.; Morganti, Raffaella; Naab, Thorsten; Oosterloo, Tom; Sarzi, Marc; Scott, Nicholas; Serra, Paolo; van de Ven, Glenn; Weijmans, Anne-Marie; Young, Lisa M.

    2011-06-01

    We provide a census of the apparent stellar angular momentum within one effective radius of a volume-limited sample of 260 early-type galaxies (ETGs) in the nearby Universe, using the integral-field spectroscopy obtained in the course of the ATLAS3D project. We exploit the λR parameter (previously used via a constant threshold value of 0.1) to characterize the existence of two families of ETGs: slow rotators which exhibit complex stellar velocity fields and often include stellar kinematically distinct cores, and fast rotators which have regular velocity fields. Our complete sample of 260 ETGs leads to a new criterion to disentangle fast and slow rotators which now includes a dependency on the apparent ellipticity ɛ. It separates the two classes significantly better than the previous prescription and better than a criterion based on V/σ: slow rotators and fast rotators have λR lower and larger than ?, respectively, where kFS= 0.31 for measurements made within an effective radius Re. We show that the vast majority of ETGs are fast rotators: these have the regular stellar rotation, with aligned photometric and kinematic axes (Paper II of this series), include discs and often bars and represent 86 ± 2 per cent (224/260) of all ETGs in the volume-limited ATLAS3D sample. Fast rotators span the full range of apparent ellipticities from ɛ= 0 to 0.85, and we suggest that they cover intrinsic ellipticities from about 0.35 to 0.85, the most flattened having morphologies consistent with spiral galaxies. Only a small fraction of ETGs are slow rotators representing 14 ± 2 per cent (36/260) of the ATLAS3D sample of ETGs. Of all slow rotators, 11 per cent (4/36) exhibit two counter-rotating stellar disc-like components and are rather low-mass objects (Mdyn < 1010.5 M⊙). All other slow rotators (32/36) appear relatively round on the sky (ɛe < 0.4), tend to be massive (Mdyn > 1010.5 M⊙), and often (17/32) exhibit kinematically distinct cores. Slow rotators dominate the

  5. Europeana and 3D

    NASA Astrophysics Data System (ADS)

    Pletinckx, D.

    2011-09-01

    The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  6. A Fast Parallel Simulation Code for Interaction between Proto-Planetary Disk and Embedded Proto-Planets: Implementation for 3D Code

    SciTech Connect

    Li, Shengtai; Li, Hui

    2012-06-14

    We develop a 3D simulation code for interaction between the proto-planetary disk and embedded proto-planets. The protoplanetary disk is treated as a three-dimensional (3D), self-gravitating gas whose motion is described by the locally isothermal Navier-Stokes equations in a spherical coordinate centered on the star. The differential equations for the disk are similar to those given in Kley et al. (2009) with a different gravitational potential that is defined in Nelson et al. (2000). The equations are solved by directional split Godunov method for the inviscid Euler equations plus operator-split method for the viscous source terms. We use a sub-cycling technique for the azimuthal sweep to alleviate the time step restriction. We also extend the FARGO scheme of Masset (2000) and modified in Li et al. (2001) to our 3D code to accelerate the transport in the azimuthal direction. Furthermore, we have implemented a reduced 2D (r, {theta}) and a fully 3D self-gravity solver on our uniform disk grid, which extends our 2D method (Li, Buoni, & Li 2008) to 3D. This solver uses a mode cut-off strategy and combines FFT in the azimuthal direction and direct summation in the radial and meridional direction. An initial axis-symmetric equilibrium disk is generated via iteration between the disk density profile and the 2D disk-self-gravity. We do not need any softening in the disk self-gravity calculation as we have used a shifted grid method (Li et al. 2008) to calculate the potential. The motion of the planet is limited on the mid-plane and the equations are the same as given in D'Angelo et al. (2005), which we adapted to the polar coordinates with a fourth-order Runge-Kutta solver. The disk gravitational force on the planet is assumed to evolve linearly with time between two hydrodynamics time steps. The Planetary potential acting on the disk is calculated accurately with a small softening given by a cubic-spline form (Kley et al. 2009). Since the torque is extremely sensitive to

  7. A fast 3D semi-analytical model for simulating flaw responses provided by a magnetic flux leakage NDT system inspecting ferromagnetic pipes

    NASA Astrophysics Data System (ADS)

    Trillon, Adrien; Deneuville, François; Prémel, Denis; Djafa, Steve; Pichon, Lionel

    2014-02-01

    This communication presents a semi-analytical model based on BEM formalism for computing MFL flaw responses. MFL 2D configurations have been already simulated in the linear case taking into account the complex shape of the magnetizing circuit surrounding the pipe to be inspected. In this paper, the 3D problem is considered, but, in a first step, in order to be able to solve the non-linear problem, we assume that each ferromagnetic part can be divided in a finite number of polyhedral cells of complex shapes, assuming that the relative magnetic permeability is constant inside each cell. The nonlinear magnetosattic problem may be tackled as a finite number of successive 3D linear problems: the unknowns of the problem being the values of the surface magnetic charge density, in this case, the scalar potential of single layer charge on all the facets of each cell. By assuming that the unknowns are piecewise constant on all the facets of each cell, the kernels derived from integral equations can be analytically evaluated. The implemented semi-analytical model reveals itself to be very effective. Some simulated data are presented for some specific configurations before solving truly NDT MFL configurations.

  8. Impulsive Reconnection in the Sun's Atmosphere

    NASA Technical Reports Server (NTRS)

    Antiochos, Spiro K.

    2009-01-01

    Recent high-resolution observations from the Hinode mission show dramatically that the Sun's atmosphere is filled with explosive activity ranging from chromospheric explosions that reach heights of Mm, to coronal jets that can extend to solar radii, to giant coronal mass ejections (CME) that reach the edge of the heliosphere. The driver for all this activity is believed to be 3D magnetic reconnection. From the large variation observed in the temporal behavior of solar activity, it is clear that reconnection in the corona must take on a variety of distinct forms. The explosive nature of jets and CMEs requires that the reconnection be impulsive in that it stays off until a substantial store of free energy has been accumulated, but then turns on abruptly and stays on until much of this free energy is released. The key question, therefore, is what determines whether the reconnection is impulsive or not. We present some of the latest observations and numerical models of explosive and non-explosive solar activity. We argue that, in order for the reconnection to be impulsive, it must be driven by a quasi-ideal instability. We discuss the generality of our results for understanding 31) reconnection in other contexts.

  9. Rough surface effects on active and passive microwave remote sensing of soil moisture at L-band using 3D fast solution of Maxwell's equations

    NASA Astrophysics Data System (ADS)

    Wang, Haogang; Liao, Tien-Hao; Shi, Jiancheng; Yu, Zherui

    2014-11-01

    The forthcoming Water Cycle Observation Mission (WCOM) is to understand the water cycle system among land, atmosphere, and ocean. In both active and passive microwave remote sensing of soil moisture, the surface roughness plays an important role. Electromagnetic models of roughness provide tables of emissivities and backscattering coefficients that can be used to retrieve soil moisture. In this paper, a fast and accurate three dimensional solution of Maxwell's equations is developed and employed to solve rough soil surface scattering problem at L-band. The algorithm combines QR Pre-Ranked Multilevel UV(MLUV) factorization and Hierarchical Fast Far Field Approximation. It is implemented using OpenMP interface for fast parallel calculation. In this algorithm, 1) QR based rank predetermined algorithm is derived to further compress the UV matrix pairs obtained using coarse-coarse sampling; 2) at the finer levels, MLUV is used straightforwardly to factorize the interactions between groups, while at the coarsest level, interactions between groups in the interaction list are calculated using an elegantly derived Hierarchical Fast Far Field Approximation (HFAFFA) to accelerate the calculation of interactions between large groups while keeping the accuracy of this approximation; 3) OpenMP interface is used to parallelize this new algorithm. Numerical results including the incoherent bistatic scattering coefficients and the emissivity demonstrate the efficiency of this method.

  10. 3d-3d correspondence revisited

    NASA Astrophysics Data System (ADS)

    Chung, Hee-Joong; Dimofte, Tudor; Gukov, Sergei; Sułkowski, Piotr

    2016-04-01

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d {N}=2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. We also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  11. WE-A-17A-10: Fast, Automatic and Accurate Catheter Reconstruction in HDR Brachytherapy Using An Electromagnetic 3D Tracking System

    SciTech Connect

    Poulin, E; Racine, E; Beaulieu, L; Binnekamp, D

    2014-06-15

    Purpose: In high dose rate brachytherapy (HDR-B), actual catheter reconstruction protocols are slow and errors prompt. The purpose of this study was to evaluate the accuracy and robustness of an electromagnetic (EM) tracking system for improved catheter reconstruction in HDR-B protocols. Methods: For this proof-of-principle, a total of 10 catheters were inserted in gelatin phantoms with different trajectories. Catheters were reconstructed using a Philips-design 18G biopsy needle (used as an EM stylet) and the second generation Aurora Planar Field Generator from Northern Digital Inc. The Aurora EM system exploits alternating current technology and generates 3D points at 40 Hz. Phantoms were also scanned using a μCT (GE Healthcare) and Philips Big Bore clinical CT system with a resolution of 0.089 mm and 2 mm, respectively. Reconstructions using the EM stylet were compared to μCT and CT. To assess the robustness of the EM reconstruction, 5 catheters were reconstructed twice and compared. Results: Reconstruction time for one catheter was 10 seconds or less. This would imply that for a typical clinical implant of 17 catheters, the total reconstruction time would be less than 3 minutes. When compared to the μCT, the mean EM tip identification error was 0.69 ± 0.29 mm while the CT error was 1.08 ± 0.67 mm. The mean 3D distance error was found to be 0.92 ± 0.37 mm and 1.74 ± 1.39 mm for the EM and CT, respectively. EM 3D catheter trajectories were found to be significantly more accurate (unpaired t-test, p < 0.05). A mean difference of less than 0.5 mm was found between successive EM reconstructions. Conclusion: The EM reconstruction was found to be faster, more accurate and more robust than the conventional methods used for catheter reconstruction in HDR-B. This approach can be applied to any type of catheters and applicators. We would like to disclose that the equipments, used in this study, is coming from a collaboration with Philips Medical.

  12. Development of a fast 3D treatment planning platform for clinical interstitial microwave hyperthermia within free-hand obliquely implanted HDR catheters

    NASA Astrophysics Data System (ADS)

    Scott, Serena J.; Salgaonkar, Vasant A.; Prakash, Punit; Curto, Sergio; Hsu, I.-Chow; Diederich, Chris J.

    2015-03-01

    A treatment planning platform for interstitial microwave hyperthermia was developed for practical, free-hand clinical implants. Such implants, consisting of non-parallel, moderately curved antennas with varying insertion depths, are used in HDR brachytherapy for treating locally advanced cancer. Numerical models for commercially available MA251 antennas (915 MHz, BSD Medical) were developed in COMSOL Multiphysics, a finite element analysis software package. To expedite treatment planning, electric fields, power deposition and temperature rises were computed for a single straight antenna in 2D axisymmetric geometry. A precomputed library of electric field and temperature solutions was created for a range of insertion depths (5-12 cm) and blood perfusion rates (0.5-5 kg/m3/s). 3D models of multiple antennas and benchtop phantoms experiments using temperature-sensitive liquid crystal paper to monitor heating by curved antennas were performed for comparative evaluation of the treatment planning platform. A patient-customizable hyperthermia treatment planning software package was developed in MATLAB with capabilities to interface with a commercial radiation therapy planning platform (Oncentra, Nucleotron), import patient and multicatheter implant geometries, calculate insertion depths, and perform hyperthermia planning with antennas operating in asynchronous or synchronous mode. During asynchronous operation, the net power deposition and temperature rises were approximated as a superposition sum of the respective quantities for one single antenna. During synchronous excitation, a superposition of complex electrical fields was performed with appropriate phasing to compute power deposition. Electric fields and temperatures from the pre-computed single-antenna library were utilized following appropriate non-rigid coordinate transformations. Comparison to 3D models indicated that superposition of electric fields around parallel antennas is valid when they are at least 15 mm

  13. High-Resolution 3-T Endorectal Prostate MRI: A Multireader Study of Radiologist Preference and Perceived Interpretive Quality of 2D and 3D T2-Weighted Fast Spin-Echo MR Images

    PubMed Central

    Westphalen, Antonio C.; Noworolski, Susan M.; Harisinghani, Mukesh; Jhaveri, Kartik S.; Raman, Steve S.; Rosenkrantz, Andrew B.; Wang, Zhen J.; Zagoria, Ronald J.; Kurhanewicz, John

    2016-01-01

    OBJECTIVE The goal of this study was to compare the perceived quality of 3-T axial T2-weighted high-resolution 2D and high-resolution 3D fast spin-echo (FSE) endorectal MR images of the prostate. MATERIALS AND METHODS Six radiologists independently reviewed paired 3-T axial T2-weighted high-resolution 2D and 3D FSE endorectal MR images of the prostates of 85 men in two sessions. In the first session (n = 85), each reader selected his or her preferred images; in the second session (n = 28), they determined their confidence in tumor identification and compared the depiction of the prostatic anatomy, tumor conspicuity, and subjective intrinsic image quality of images. A meta-analysis using a random-effects model, logistic regression, and the paired Wilcoxon rank-sum test were used for statistical analyses. RESULTS Three readers preferred the 2D acquisition (67–89%), and the other three preferred the 3D images (70–80%). The option for one of the techniques was not associated with any of the predictor variables. The 2D FSE images were significantly sharper than 3D FSE (p < 0.001) and significantly more likely to exhibit other (nonmotion) artifacts (p = 0.002). No other statistically significant differences were found. CONCLUSION Our results suggest that there are strong individual preferences for the 2D or 3D FSE MR images, but there was a wide variability among radiologists. There were differences in image quality (image sharpness and presence of artifacts not related to motion) but not in the sequences’ ability to delineate the glandular anatomy and depict a cancerous tumor. PMID:26491891

  14. Reconstruction of the Asymmetric Magnetic Reconnection Region at the Magnetopause

    NASA Astrophysics Data System (ADS)

    Guo, R.; Pu, Z.; Xie, L.; Fu, S.

    2015-12-01

    Magnetic reconnection at the magnetopause is a key process coupling the earth's magnetosphere with interplanetary space. Multiple spacecraft measurement makes it possible to study observationally the structure of the reconnection region. In this paper we improve the fitting-reconstructing method developed by He et al. [2008] and use it to investigate the asymmetric reconnection event observed by Cluster on Apr. 06, 2004. The reconnection site was encountered when the constellation traversed the dayside magnetopause at z~5.3Re, with spacecraft separations less than 400km. The reconstructing results clearly revealed the asymmetric geometry of the reconnection region. The orientation of the X-line, which was reproduced as the separator linking a pair of magnetic null points, was shown to be ~60° away from the M-direction in the local LMN coordinate. Bipolar and unipolar Hall fields were both seen by different spacecraft, implying that the reconnection regime was 3D in nature, and the difference in Hall fields could be related to the existence of two null points which restricted the length of the separator. In addition, electromagnetic lower hybrid waves are found to be enhanced on the magnetospheric side of the reconnection region. The reconstructing results are helpful for providing a 3D picture of the asymmetric reconnection region, and the improved reconstructing method can be applied to analyze the data from MMS which is deployed with small separations of satellites.

  15. Resistive Magnetohydrodynamic Simulations of Relativistic Magnetic Reconnection

    NASA Technical Reports Server (NTRS)

    Zenitani, Seiji; Hesse, Michael; Klimas, Alex

    2010-01-01

    Resistive relativistic magnetohydrodynamic (RRMHD) simulations are applied to investigate the system evolution of relativistic magnetic reconnection. A time-split Harten-Lan-van Leer method is employed. Under a localized resistivity, the system exhibits a fast reconnection jet with an Alfv enic Lorentz factor inside a narrow Petschek-type exhaust. Various shock structures are resolved in and around the plasmoid such as the post-plasmoid vertical shocks and the "diamond-chain" structure due to multiple shock reflections. Under a uniform resistivity, Sweet-Parker-type reconnection slowly evolves. Under a current-dependent resistivity, plasmoids are repeatedly formed in an elongated current sheet. It is concluded that the resistivity model is of critical importance for RRMHD modeling of relativistic magnetic reconnection.

  16. A fast mode decision algorithm for multiview auto-stereoscopic 3D video coding based on mode and disparity statistic analysis

    NASA Astrophysics Data System (ADS)

    Ding, Cong; Sang, Xinzhu; Zhao, Tianqi; Yan, Binbin; Leng, Junmin; Yuan, Jinhui; Zhang, Ying

    2012-11-01

    Multiview video coding (MVC) is essential for applications of the auto-stereoscopic three-dimensional displays. However, the computational complexity of MVC encoders is tremendously huge. Fast algorithms are very desirable for the practical applications of MVC. Based on joint early termination , the selection of inter-view prediction and the optimization of the process of Inter8×8 modes by comparison, a fast macroblock(MB) mode selection algorithm is presented. Comparing with the full mode decision in MVC, the experimental results show that the proposed algorithm can reduce up to 78.13% on average and maximum 90.21% encoding time with a little increase in bit rates and loss in PSNR.

  17. Collisionless Reconnection and Electron Demagnetization

    NASA Astrophysics Data System (ADS)

    Scudder, J. D.

    Observable, dimensionless properties of the electron diffusion region of collisionless magnetic reconnection are motivated and benchmarked in two and three dimensional Particle In Cell (PIC) simulations as appropriate for measurements with present state of the art spacecraft. The dimensionless quantities of this paper invariably trace their origin to breaking the magnetization of the thermal electrons. Several observable proxies are also motivated for the rate of frozen flux violation and a parameter \\varLambda _{\\varPhi } that when greater than unity is associated with close proximity to the analogue of the saddle point region of 2D reconnection usually called the electron diffusion region. Analogous regions to the electron diffusion region of 2D reconnection with \\varLambda _{\\varPhi } > 1 have been identified in 3D simulations. 10-20 disjoint diffusion regions are identified and the geometrical patterns of their locations illustrated. First examples of associations between local observables based on electron demagnetization and global diagnostics (like squashing) are also presented. A by product of these studies is the development of a single spacecraft determinations of gradient scales in the plasma.

  18. 3D and Education

    NASA Astrophysics Data System (ADS)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  19. The 3-D description of vertical current sheets with application to solar flares

    NASA Technical Reports Server (NTRS)

    Fontenla, Juan M.; Davis, J. M.

    1991-01-01

    Following a brief review of the processes which have been suggested for explaining the occurrence of solar flares we suggest a new scenario which builds on the achievements of the previous suggestion that the current sheets, which develop naturally in 3-D cases with gravity from impacting independent magnetic structures (i.e., approaching current systems), do not consist of horizontal currents but are instead predominantly vertical current systems. This suggestion is based on the fact that as the subphotospheric sources of the magnetic field displace the upper photosphere and lower chromosphere regions, where plasma beta is near unity, will experience predominantly horizontal mass motions which will lead to a distorted 3-D configurations of the magnetic field having stored free energy. In our scenario, a vertically flowing current sheet separates the plasma regions associated with either of the subphotospheric sources. This reflects the balanced tension of the two stressed fields which twist around each other. This leads naturally to a metastable or unstable situation as the twisted field emerges into a low beta region where vertical motions are not inhibited by gravity. In our flare scenario the impulsive energy release occurs, initially, not by reconnection but mainly by the rapid change of the magnetic field which has become unstable. During the impulsive phase the field lines contort in such way as to realign the electric current sheet into a minimum energy horizontal flow. This contortion produces very large electric fields which will accelerate particles. As the current evolves to a horizontal configuration the magnetic field expands vertically, which can be accompanied by eruptions of material. The instability of a horizontal current is well known and causes the magnetic field to undergo a rapid outward expansion. In our scenario, fast reconnection is not necessary to trigger the flare, however, slow reconnection would occur continuously in the current layer

  20. Intimate connection of turbulence and reconnection: theory, testing and consequences

    NASA Astrophysics Data System (ADS)

    Lazarian, Alex

    2016-07-01

    I shall show that magnetic reconnection and turbulence are intrinsically connected: in the presence of turbulence magnetic reconnection gets fast while magnetic turbulence depends on reconnection for its cascading. I shall present the basics of the theory of turbulent magnetic reconnection in non-relativistic and relativistic plasmas, discuss numerical and observational tests of the theory and outline the consequences of the theory from diffusion of magnetic fields in Parker spiral and in the process of star formation to violent flares accelerating energetic particles in solar flares and gamma ray bursts.

  1. A new methodology in fast and accurate matching of the 2D and 3D point clouds extracted by laser scanner systems

    NASA Astrophysics Data System (ADS)

    Torabi, M.; Mousavi G., S. M.; Younesian, D.

    2015-03-01

    Registration of the point clouds is a conventional challenge in computer vision related applications. As an application, matching of train wheel profiles extracted from two viewpoints is studied in this paper. The registration problem is formulated into an optimization problem. An error minimization function for registration of the two partially overlapping point clouds is presented. The error function is defined as the sum of the squared distance between the source points and their corresponding pairs which should be minimized. The corresponding pairs are obtained thorough Iterative Closest Point (ICP) variants. Here, a point-to-plane ICP variant is employed. Principal Component Analysis (PCA) is used to obtain tangent planes. Thus it is shown that minimization of the proposed objective function diminishes point-to-plane ICP variant. We utilized this algorithm to register point clouds of two partially overlapping profiles of wheel train extracted from two viewpoints in 2D. Also, a number of synthetic point clouds and a number of real point clouds in 3D are studied to evaluate the reliability and rate of convergence in our method compared with other registration methods.

  2. Fast Li-Ion-Conducting Garnet-Related Li7–3xFexLa3Zr2O12 with Uncommon I4̅3d Structure

    PubMed Central

    2016-01-01

    Fast Li-ion-conducting Li oxide garnets receive a great deal of attention as they are suitable candidates for solid-state Li electrolytes. It was recently shown that Ga-stabilized Li7La3Zr2O12 crystallizes in the acentric cubic space group I4̅3d. This structure can be derived by a symmetry reduction of the garnet-type Ia3̅d structure, which is the most commonly found space group of Li oxide garnets and garnets in general. In this study, single-crystal X-ray diffraction confirms the presence of space group I4̅3d also for Li7–3xFexLa3Zr2O12. The crystal structure was characterized by X-ray powder diffraction, single-crystal X-ray diffraction, neutron powder diffraction, and Mößbauer spectroscopy. The crystal–chemical behavior of Fe3+ in Li7La3Zr2O12 is very similar to that of Ga3+. The symmetry reduction seems to be initiated by the ordering of Fe3+ onto the tetrahedral Li1 (12a) site of space group I4̅3d. Electrochemical impedance spectroscopy measurements showed a Li-ion bulk conductivity of up to 1.38 × 10–3 S cm–1 at room temperature, which is among the highest values reported for this group of materials. PMID:27570369

  3. The role of Reconnection Diffusion in star formation

    NASA Astrophysics Data System (ADS)

    Santos-Lima, Reinaldo; Lazarian, Alex; De Gouveia Dal Pino, Elisabete; Guerrero, Gustavo; Leao, Marcia

    Fast magnetic reconnection is an omnipresent process in turbulent astrophysical flows. It allows the magnetic flux to diffuse through the gas even when the ideal MHD approximation is applicable. Recently we have tested this diffusive mechanism (termed ``Reconnection Diffusion'', RD) for solving two intriguing problems related to star formation: (i) the removal of magnetic flux from collapsing molecular clouds in order to explain the observed magnetic field intensities in protostars (the ``magnetic flux problem''), and (ii) the formation of rotationally sustained protostellar disks in the presence of the magnetic fields, which tend to remove all the angular momentum (the ``magnetic braking catastrophe''). Using 3D MHD simulations we have demonstrated successfully the efficiency of the RD in both problems. More recently, we have also identified the conditions under which RD is able to produce supercritical cores from self-gravitating subcritical molecular cloud clumps. In this presentation we review the RD theory and the results of our numerical studies in different phases of star formation. We also derive the RD coefficient profile from the numerical simulations and compare with the theoretical predictions.

  4. A fast, angle-dependent, analytical model of CsI detector response for optimization of 3D x-ray breast imaging systems

    PubMed Central

    Freed, Melanie; Park, Subok; Badano, Aldo

    2010-01-01

    Purpose: Accurate models of detector blur are crucial for performing meaningful optimizations of three-dimensional (3D) x-ray breast imaging systems as well as for developing reconstruction algorithms that faithfully reproduce the imaged object anatomy. So far, x-ray detector blur has either been ignored or modeled as a shift-invariant symmetric function for these applications. The recent development of a Monte Carlo simulation package called MANTIS has allowed detailed modeling of these detector blur functions and demonstrated the magnitude of the anisotropy for both tomosynthesis and breast CT imaging systems. Despite the detailed results that MANTIS produces, the long simulation times required make inclusion of these results impractical in rigorous optimization and reconstruction algorithms. As a result, there is a need for detector blur models that can be rapidly generated. Methods: In this study, the authors have derived an analytical model for deterministic detector blur functions, referred to here as point response functions (PRFs), of columnar CsI phosphor screens. The analytical model is x-ray energy and incidence angle dependent and draws on results from MANTIS to indirectly include complicated interactions that are not explicitly included in the mathematical model. Once the mathematical expression is derived, values of the coefficients are determined by a two-dimensional (2D) fit to MANTIS-generated results based on a figure-of-merit (FOM) that measures the normalized differences between the MANTIS and analytical model results averaged over a region of interest. A smaller FOM indicates a better fit. This analysis was performed for a monochromatic x-ray energy of 25 keV, a CsI scintillator thickness of 150 μm, and four incidence angles (0°, 15°, 30°, and 45°). Results: The FOMs comparing the analytical model to MANTIS for these parameters were 0.1951±0.0011, 0.1915±0.0014, 0.2266±0.0021, and 0.2416±0.0074 for 0°, 15°, 30°, and 45

  5. Reversible collisionless magnetic reconnection

    SciTech Connect

    Ishizawa, A.; Watanabe, T.-H.

    2013-10-15

    Reversible magnetic reconnection is demonstrated for the first time by means of gyrokinetic numerical simulations of a collisionless magnetized plasma. Growth of a current-driven instability in a sheared magnetic field is accompanied by magnetic reconnection due to electron inertia effects. Following the instability growth, the collisionless reconnection is accelerated with development of a cross-shaped structure of current density, and then all field lines are reconnected. The fully reconnected state is followed by the secondary reconnection resulting in a weakly turbulent state. A time-reversed simulation starting from the turbulent state manifests that the collisionless reconnection process proceeds inversely leading to the initial state. During the reversed reconnection, the kinetic energy is reconverted into the original magnetic field energy. In order to understand the stability of reversed process, an external perturbation is added to the fully reconnected state, and it is found that the accelerated reconnection is reversible when the deviation of the E × B streamlines due to the perturbation is comparable with or smaller than a current layer width.

  6. Drift Wave Turbulence and Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Price, L.; Drake, J. F.; Swisdak, M.

    2015-12-01

    An important feature in collisionless magnetic reconnection is the development of sharp discontinuities along the separatrices bounding the Alfvenic outflow. The typical scale length of these features is ρs (the Larmor radius based on the sound speed) for guide field reconnection. Temperature gradients in the inflowing plasma (as might be found in the magnetopause and the magnetotail) can lead to instabilities at these separatrices, specifically drift wave turbulence. We present standalone 2D and 3D PIC simulations of drift wave turbulence to investigate scaling properties and growth rates. We specifically consider stabilization of the lower hybrid drift instability (LHDI) and the development of this instability in the presence of a sheared magnetic field. Further investigations of the relative importance of drift wave turbulence in the development of reconnection will also be considered.

  7. 3D quantification of dynamic fluid-fluid interfaces in porous media with fast x-ray microtomography: A comparison with quasi-equilibrium methods

    NASA Astrophysics Data System (ADS)

    Meisenheimer, D.; Brueck, C. L.; Wildenschild, D.

    2015-12-01

    X-ray microtomography imaging of fluid-fluid interfaces in three-dimensional porous media allows for the testing of thermodynamically derived predictions that seek a unique relationship between capillary pressure, fluid saturation, and specific interfacial area (Pc-Sw-Anw). Previous experimental studies sought to test this functional dependence under quasi-equilibrium conditions (assumed static on the imaging time-scale); however, applying predictive models developed under static conditions for dynamic scenarios can lead to substantial flaws in predicted outcomes. Theory and models developed using dynamic data can be verified using fast x-ray microtomography which allows for the unprecedented measurement of developing interfacial areas, curvatures, and trapping behaviors of fluid phases in three-dimensional systems. We will present results of drainage and imbibition experiments of air and water within a mixture of glass beads. The experiments were performed under both quasi-equilibrium and dynamic conditions at the Advanced Photon Source (APS) at Argonne National Laboratory. Fast x-ray microtomography was achieved by utilizing the high brilliance of the x-ray beam at the APS under pink-beam conditions where the white beam is modified with a 4 mm Al absorber and a 0.8 mrad Pt-coated mirror to eliminate low and high-energy photons, respectively. We present a comparison of the results from the quasi-equilibrium and dynamic experiments in an effort to determine if the Pc-Sw-Anw relationship is comparable under either experimental condition and to add to the discussion on whether the Pc-Sw-Anw relationship is unique as hypothesized by existing theory.

  8. Application of Stereo Vision to the Reconnection Scaling Experiment

    SciTech Connect

    Klarenbeek, Johnny; Sears, Jason A.; Gao, Kevin W.; Intrator, Thomas P.; Weber, Thomas

    2012-08-14

    The measurement and simulation of the three-dimensional structure of magnetic reconnection in astrophysical and lab plasmas is a challenging problem. At Los Alamos National Laboratory we use the Reconnection Scaling Experiment (RSX) to model 3D magnetohydrodynamic (MHD) relaxation of plasma filled tubes. These magnetic flux tubes are called flux ropes. In RSX, the 3D structure of the flux ropes is explored with insertable probes. Stereo triangulation can be used to compute the 3D position of a probe from point correspondences in images from two calibrated cameras. While common applications of stereo triangulation include 3D scene reconstruction and robotics navigation, we will investigate the novel application of stereo triangulation in plasma physics to aid reconstruction of 3D data for RSX plasmas. Several challenges will be explored and addressed, such as minimizing 3D reconstruction errors in stereo camera systems and dealing with point correspondence problems.

  9. Review of recent experiments on magnetic reconnection in laboratory plasmas

    SciTech Connect

    Yamada, M.

    1995-02-01

    The present paper reviews recent laboratory experiments on magnetic reconnection. Examples will be drawn from electron current sheet experiments, merging spheromaks, and from high temperature tokamak plasmas with the Lundquist numbers exceeding 10{sup 7}. These recent laboratory experiments create an environment which satisfies the criteria for MHD plasma and in which the global boundary conditions can be controlled externally. Experiments with fully three dimensional reconnection are now possible. In the most recent TFTR tokamak discharges, Motional Stark effect (MSE) data have verified the existence of a partial reconnection. In the experiment of spheromak merging, a new plasma acceleration parallel to the neutral line has been indicated. Together with the relationship of these observations to the analysis of magnetic reconnection in space and in solar flares, important physics issues such as global boundary conditions, local plasma parameters, merging angle of the field lines, and the 3-D aspects of the reconnection are discussed.

  10. 3D Imaging.

    ERIC Educational Resources Information Center

    Hastings, S. K.

    2002-01-01

    Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)

  11. Experimental study of ion heating and acceleration during magnetic reconnection

    SciTech Connect

    Hsu, S.C.

    2000-01-28

    This dissertation reports an experimental study of ion heating and acceleration during magnetic reconnection, which is the annihilation and topological rearrangement of magnetic flux in a conductive plasma. Reconnection is invoked often to explain particle heating and acceleration in both laboratory and naturally occurring plasmas. However, a simultaneous account of reconnection and its associated energy conversion has been elusive due to the extreme inaccessibility of reconnection events, e.g. in the solar corona, the Earth's magnetosphere, or in fusion research plasmas. Experiments for this work were conducted on MRX (Magnetic Reconnection Experiment), which creates a plasma environment allowing the reconnection process to be isolated, reproduced, and diagnosed in detail. Key findings of this work are the identification of local ion heating during magnetic reconnection and the determination that non-classical effects must provide the heating mechanism. Measured ion flows are sub-Alfvenic and can provide only slight viscous heating, and classical ion-electron interactions can be neglected due to the very long energy equipartition time. The plasma resistivity in the reconnection layer is seen to be enhanced over the classical value, and the ion heating is observed to scale with the enhancement factor, suggesting a relationship between the magnetic energy dissipation mechanism and the ion heating mechanism. The observation of non-classical ion heating during reconnection has significant implications for understanding the role played by non-classical dissipation mechanisms in generating fast reconnection. The findings are relevant for many areas of space and laboratory plasma research, a prime example being the currently unsolved problem of solar coronal heating. In the process of performing this work, local measurements of ion temperature and flows in a well-characterized reconnection layer were obtained for the first time in either laboratory or observational

  12. 3D fast spin echo with out-of-slab cancellation: a technique for high-resolution structural imaging of trabecular bone at 7 Tesla.

    PubMed

    Magland, Jeremy F; Rajapakse, Chamith S; Wright, Alexander C; Acciavatti, Raymond; Wehrli, Felix W

    2010-03-01

    Spin-echo-based pulse sequences are desirable for the application of high-resolution imaging of trabecular bone but tend to involve high-power deposition. Increased availability of ultrahigh field scanners has opened new possibilities for imaging with increased signal-to-noise ratio (SNR) efficiency, but many pulse sequences that are standard at 1.5 and 3 T exceed specific absorption rate limits at 7 T. A modified, reduced specific absorption rate, three-dimensional, fast spin-echo pulse sequence optimized specifically for in vivo trabecular bone imaging at 7 T is introduced. The sequence involves a slab-selective excitation pulse, low-power nonselective refocusing pulses, and phase cycling to cancel undesired out-of-slab signal. In vivo images of the distal tibia were acquired using the technique at 1.5, 3, and 7 T field strengths, and SNR was found to increase at least linearly using receive coils of identical geometry. Signal dependence on the choice of refocusing flip angles in the echo train was analyzed experimentally and theoretically by combining the signal from hundreds of coherence pathways, and it is shown that a significant specific absorption rate reduction can be achieved with negligible SNR loss. PMID:20187181

  13. Recent advances in collisionless magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Porcelli, F.; Borgogno, D.; Califano, F.; Grasso, D.; Ottaviani, M.; Pegoraro, F.

    2002-12-01

    One of the recurring problems in magnetic reconnection is the identification of the appropriate generalized Ohm's law. In weakly collisional plasmas with a strong magnetic guide field component, a fluid model may be adopted, where electron inertia and the electron pressure gradient play important roles. In the absence of collisions, electron inertia provides the mechanism for magnetic field-line breaking. Electron compressibility alters significantly the structure of the reconnection region and allows for faster reconnection rates, which are consistent with the fast relaxation times of sawtooth oscillations in tokamak plasmas. The Hall term may also become important when the guide field is weak. The very possibility of nonlinear, irreversible magnetic reconnection in the absence of dissipation is addressed. We show that in a collisionless plasma, magnetic islands can grow and reach a saturated state in a coarse-grained sense. Magnetic energy is transferred to kinetic energy in smaller and smaller spatial scale lengths through a phase mixing process. The same model is then applied to the interpretation of driven reconnection events in the vicinity of a magnetic X-line observed in the VTF experiment at MIT. The reconnection is driven by externally induced plasma flows in a background magnetic configuration that has a hyperbolic null in the reconnection plane and a magnetic guide field component perpendicular to that plane. In the limit where the guide field is strong, assuming the external drive to be sufficiently weak for a linear approximation to hold, a dynamic evolution of the system is obtained which does not reach a stationary state. The reconnection process develops in two phases: an initial phase, whose characteristic rate is a fraction of the Alfvén frequency, and a later one, whose rate is determined by the electron collision frequency.

  14. Software for 3D radiotherapy dosimetry. Validation

    NASA Astrophysics Data System (ADS)

    Kozicki, Marek; Maras, Piotr; Karwowski, Andrzej C.

    2014-08-01

    The subject of this work is polyGeVero® software (GeVero Co., Poland), which has been developed to fill the requirements of fast calculations of 3D dosimetry data with the emphasis on polymer gel dosimetry for radiotherapy. This software comprises four workspaces that have been prepared for: (i) calculating calibration curves and calibration equations, (ii) storing the calibration characteristics of the 3D dosimeters, (iii) calculating 3D dose distributions in irradiated 3D dosimeters, and (iv) comparing 3D dose distributions obtained from measurements with the aid of 3D dosimeters and calculated with the aid of treatment planning systems (TPSs). The main features and functions of the software are described in this work. Moreover, the core algorithms were validated and the results are presented. The validation was performed using the data of the new PABIGnx polymer gel dosimeter. The polyGeVero® software simplifies and greatly accelerates the calculations of raw 3D dosimetry data. It is an effective tool for fast verification of TPS-generated plans for tumor irradiation when combined with a 3D dosimeter. Consequently, the software may facilitate calculations by the 3D dosimetry community. In this work, the calibration characteristics of the PABIGnx obtained through four calibration methods: multi vial, cross beam, depth dose, and brachytherapy, are discussed as well.

  15. Fast perspective volume ray casting method using GPU-based acceleration techniques for translucency rendering in 3D endoluminal CT colonography.

    PubMed

    Lee, Taek-Hee; Lee, Jeongjin; Lee, Ho; Kye, Heewon; Shin, Yeong Gil; Kim, Soo Hong

    2009-08-01

    Recent advances in graphics processing unit (GPU) have enabled direct volume rendering at interactive rates. However, although perspective volume rendering for opaque isosurface is rapidly performed using conventional GPU-based method, perspective volume rendering for non-opaque volume such as translucency rendering is still slow. In this paper, we propose an efficient GPU-based acceleration technique of fast perspective volume ray casting for translucency rendering in computed tomography (CT) colonography. The empty space searching step is separated from the shading and compositing steps, and they are divided into separate processing passes in the GPU. Using this multi-pass acceleration, empty space leaping is performed exactly at the voxel level rather than at the block level, so that the efficiency of empty space leaping is maximized for colon data set, which has many curved or narrow regions. In addition, the numbers of shading and compositing steps are fixed, and additional empty space leapings between colon walls are performed to increase computational efficiency further near the haustral folds. Experiments were performed to illustrate the efficiency of the proposed scheme compared with the conventional GPU-based method, which has been known to be the fastest algorithm. The experimental results showed that the rendering speed of our method was 7.72fps for translucency rendering of 1024x1024 colonoscopy image, which was about 3.54 times faster than that of the conventional method. Since our method performed the fully optimized empty space leaping for any kind of colon inner shapes, the frame-rate variations of our method were about two times smaller than that of the conventional method to guarantee smooth navigation. The proposed method could be successfully applied to help diagnose colon cancer using translucency rendering in virtual colonoscopy. PMID:19541296

  16. Forensic 3D Scene Reconstruction

    SciTech Connect

    LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.

    1999-10-12

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  17. Forensic 3D scene reconstruction

    NASA Astrophysics Data System (ADS)

    Little, Charles Q.; Small, Daniel E.; Peters, Ralph R.; Rigdon, J. B.

    2000-05-01

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a fieldable prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  18. 3D light scanning macrography.

    PubMed

    Huber, D; Keller, M; Robert, D

    2001-08-01

    The technique of 3D light scanning macrography permits the non-invasive surface scanning of small specimens at magnifications up to 200x. Obviating both the problem of limited depth of field inherent to conventional close-up macrophotography and the metallic coating required by scanning electron microscopy, 3D light scanning macrography provides three-dimensional digital images of intact specimens without the loss of colour, texture and transparency information. This newly developed technique offers a versatile, portable and cost-efficient method for the non-invasive digital and photographic documentation of small objects. Computer controlled device operation and digital image acquisition facilitate fast and accurate quantitative morphometric investigations, and the technique offers a broad field of research and educational applications in biological, medical and materials sciences. PMID:11489078

  19. GPU-Accelerated Denoising in 3D (GD3D)

    2013-10-01

    The raw computational power GPU Accelerators enables fast denoising of 3D MR images using bilateral filtering, anisotropic diffusion, and non-local means. This software addresses two facets of this promising application: what tuning is necessary to achieve optimal performance on a modern GPU? And what parameters yield the best denoising results in practice? To answer the first question, the software performs an autotuning step to empirically determine optimal memory blocking on the GPU. To answer themore » second, it performs a sweep of algorithm parameters to determine the combination that best reduces the mean squared error relative to a noiseless reference image.« less

  20. Multi-Scale Modeling of Magnetospheric Reconnection

    NASA Technical Reports Server (NTRS)

    Kuznetsova, M. M.; Hesse, M.; Rastatter, L.; Toth, G.; Dezeeuw, D.; Gomobosi, T.

    2007-01-01

    One of the major challenges in modeling the magnetospheric magnetic reconnection is to quantify the interaction between large-scale global magnetospheric dynamics and microphysical processes in diffusion regions near reconnection sites. There is still considerable debate as to what degree microphysical processes on kinetic scales affect the global evolution and how important it is to substitute numerical dissipation and/or ad hoc anomalous resistivity by a physically motivated model of dissipation. Comparative studies of magnetic reconnection in small scale geometries demonstrated that MHD simulations that included non-ideal processes in terms of a resistive term $\\eta J$ did not produce the fast reconnection rates observed in kinetic simulations. For a broad range of physical parameters in collisionless magnetospheric plasma, the primary mechanism controlling the dissipation in the vicinity of the reconnection site is non-gyrotropic effects with spatial scales comparable with the particle Larmor radius. We utilize the global MHD code BATSRUS and incorporate nongyrotropic effects in diffusion regions in terms of corrections to the induction equation. We developed an algorithm to search for magnetotail reconnection sites, specifically where the magnetic field components perpendicular to the local current direction approaches zero and form an X-type configuration. Spatial scales of the diffusion region and magnitude of the reconnection electric field are calculated selfconsistently using MHD plasma and field parameters in the vicinity of the reconnection site. The location of the reconnection sites is updated during the simulations. To clarify the role of nongyrotropic effects in diffusion region on the global magnetospheric dynamic we perform simulations with steady southward IMF driving of the magnetosphere. Ideal MHD simulations with magnetic reconnection supported by numerical resistivity produce steady configuration with almost stationary near-earth neutral

  1. Feasible voltage-tap based quench detection in a Ag/Bi-2212 coil enabled by fast 3D normal zone propagation

    DOE PAGESBeta

    Shen, Tengming; Ye, Liyang; Li, Pei

    2016-07-01

    For this study, small insert solenoids have been built using a commercial Ag/Bi-2212 multifilamentary round wire, insulated with a new thin TiO2– polymer coating insulation (thickness in ~20 μm versus ~100 μm for a commonly used mullite braided sleeve insulation), and characterized in background magnetic field up to 14 T at 4.2 K to explore the high-field performance and quench detection of Bi-2212 magnets. The coil has no visible leakage and no electrical shorts after reaction, and it carries 280 A/mm-2 in a background field 14 T and generates an additional 1.7 T. A notable result is that, despite normalmore » zones propagate slowly along the conductor, the hot spot temperature upon detection increases only from 40 K to 60 K when the resistive quench detection voltage threshold increases from 0.1 V to 1 V for all operating current density investigated, showing that quench detection using voltage taps is feasible for this coil. This is in a strong contrast to a coil we previously built to the same specifications but from wires insulated with the mullite braided sleeve insulation, for which the hot spot temperature upon detection increases from ~80 K to ~140 K while increasing from the detection voltage threshold from 0.1 V to 1 V, and thus for which quench detection using voltage taps presents significant risks, consistent with the common belief that the effectiveness of quench detection using voltage taps for superconducting magnets built using high temperature superconductors is seriously compromised by their slow normal zone propagation. This striking difference is ascribed to the fast transverse quench propagation enabled by thin insulation and improved thermal coupling between conductor turns. Finally, this work demonstrates that quench detection for high-temperature superconducting magnets highly depends on the design and construction of the coils such as insulation materials used and this dependence should be factored into the overall magnet design.« less

  2. Feasible voltage-tap based quench detection in a Ag/Bi-2212 coil enabled by fast 3D normal zone propagation

    NASA Astrophysics Data System (ADS)

    Shen, Tengming; Ye, Liyang; Li, Pei

    2016-08-01

    Small insert solenoids have been built using a commercial Ag/Bi-2212 multifilamentary round wire, insulated with a new thin TiO2–polymer coating insulation (thickness of ∼20 μm versus ∼100 μm for a commonly used mullite braided sleeve insulation), and characterized in a background magnetic field up to 14 T at 4.2 K to explore the high-field performance and quench detection of Bi-2212 magnets. The coil has no visible leakage and no electrical shorts after reaction, and it carries 280 A mm‑2 in a background field of 14 T and generates an additional 1.7 T. A notable result is that, despite normal zones propagating slowly along the conductor, the hot spot temperature upon detection increases only from 40 K to 60 K when the resistive quench detection voltage threshold increases from 0.1 V to 1 V for all operating current density investigated, showing that quench detection using voltage taps is feasible for this coil. This is in strong contrast to a coil we have previously built to the same specifications but from wires insulated with mullite braided sleeve insulation, for which the hot spot temperature upon detection increases from ∼80 K to ∼140 K while increasing the detection voltage threshold from 0.1 V to 1 V, and thus for which quench detection using voltage taps presents significant risks, consistent with the common belief that the effectiveness of quench detection using voltage taps for superconducting magnets built using high-temperature superconductors is seriously compromised by their slow normal zone propagation. This striking difference is ascribed to the fast transverse quench propagation enabled by thin insulation and the improved thermal coupling between conductor turns. This work demonstrates that quench detection for high-temperature superconducting magnets highly depends on the design and construction of the coils such as the insulation materials used and this dependence should be factored into the overall magnet design.

  3. Collisionless Reconnection in an Electron-Positron Plasma

    SciTech Connect

    Bessho, N.; Bhattacharjee, A.

    2005-12-09

    Electromagnetic particle-in-cell simulations of fast collisionless reconnection in a two-dimensional electron-positron plasma (without an equilibrium guide field) are presented. A generalized Ohm's law in which the Hall current cancels out exactly is given. It is suggested that the key to fast reconnection in this plasma is the localization caused by the off-diagonal components of the pressure tensors, which produce an effect analogous to a spatially localized resistivity.

  4. Collisionless reconnection in an electron-positron plasma.

    PubMed

    Bessho, N; Bhattacharjee, A

    2005-12-01

    Electromagnetic particle-in-cell simulations of fast collisionless reconnection in a two-dimensional electron-positron plasma (without an equilibrium guide field) are presented. A generalized Ohm's law in which the Hall current cancels out exactly is given. It is suggested that the key to fast reconnection in this plasma is the localization caused by the off-diagonal components of the pressure tensors, which produce an effect analogous to a spatially localized resistivity. PMID:16384388

  5. TRACE 3-D documentation

    SciTech Connect

    Crandall, K.R.

    1987-08-01

    TRACE 3-D is an interactive beam-dynamics program that calculates the envelopes of a bunched beam, including linear space-charge forces, through a user-defined transport system. TRACE 3-D provides an immediate graphics display of the envelopes and the phase-space ellipses and allows nine types of beam-matching options. This report describes the beam-dynamics calculations and gives detailed instruction for using the code. Several examples are described in detail.

  6. Reconnection in Planetary Magnetospheres

    NASA Technical Reports Server (NTRS)

    Russell, C. T.

    2000-01-01

    Current sheets in planetary magnetospheres that lie between regions of "oppositely-directed" magnetic field are either magnetopause-like, separating plasmas with different properties, or tail-like, separating plasmas of rather similar properties. The magnetopause current sheets generally have a nearly limitless supply of magnetized plasma that can reconnect, possibly setting up steady-state reconnection. In contrast, the plasma on either side of a tail current sheet is stratified so that, as reconnection occurs, the plasma properties, in particular the Alfven velocity, change. If the density drops and the magnetic field increases markedly perpendicular to the sheet, explosive reconnection can occur. Even though steady state reconnection can take place at magnetopause current sheets, the process often appears to be periodic as if a certain low average rate was demanded by the conditions but only a rapid rate was available. Reconnection of sheared fields has been postulated to create magnetic ropes in the solar corona, at the Earth's magnetopause, and in the magnetotail. However, this is not the only way to produce magnetic ropes as the Venus ionosphere shows. The geometry of the reconnecting regions and the plasma conditions both can affect the rate of reconnection. Sorting out the various controlling factors can be assisted through the examination of reconnection in planetary settings. In particular we observe similar small-scale tearing in the magnetopause current layers of the Earth, Saturn. Uranus and Neptune and the magnetodisk current sheet at Jupiter. These sites may be seeds for rapid reconnection if the reconnection site reaches a high Alfven velocity region. In the Jupiter magnetosphere this appears to be achieved with resultant substorm activity. Similar seeds may be present in the Earth's magnetotail with the first one to reach explosive growth dominating the dynamics of the tail.

  7. Relationship between ridge segmentation and Moho transition zone structure from 3D multichannel seismic data collected over the fast-spreading East Pacific Rise at 9°50'N

    NASA Astrophysics Data System (ADS)

    Aghaei, O.; Nedimovic, M. R.; Canales, J.; Carton, H. D.; Carbotte, S. M.; Mutter, J. C.

    2010-12-01

    We present stack and migrated stack volumes of a fast-spreading center produced from the high-resolution 3D multichannel seismic (MCS) data collected in summer of 2008 over the East Pacific Rise (EPR) at 9°50’N during cruise MGL0812. These volumes give us new insight into the 3D structure of the lower crust and Moho Transition Zone (MTZ) along and across the ridge axis, and how this structure relates to the ridge segmentation at the spreading axis. The area of 3D coverage is between 9°38’N and 9°58’N (~1000 km2) where the documented eruptions of 1990-91 and 2005-06 occurred. This high-resolution survey has a nominal bin size of 6.25 m in cross-axis direction and 37.5 m in along-axis direction. The prestack processing sequence applied to data includes 1D and 2D filtering to remove low-frequency cable noise, offset-dependent spherical divergence correction to compensate for geometrical spreading, surface-consistent amplitude correction to balance abnormally high/low shot and channel amplitudes, trace editing, velocity analysis, normal moveout (NMO), and CMP mute of stretched far offset arrivals. The poststack processing includes seafloor multiple mute to reduce migration noise and poststack time migration. We also will apply primary multiple removal and prestack time migration to the data and compare the results to the migrated stack volume. The poststack and prestack migrated volumes will then be used to detail Moho seismic signature variations and their relationship to ridge segmentation, crustal age, bathymetry, and magmatism. We anticipate that the results will also provide insight into the mantle upwelling pattern, which is actively debated for the study area.

  8. Notes on Magnetohydrodynamics of Magnetic Reconnection in Turbulent Media

    NASA Astrophysics Data System (ADS)

    Browning, Philippa; Lazarian, Alex

    2013-10-01

    Astrophysical fluids have very large Reynolds numbers and therefore turbulence is their natural state. Magnetic reconnection is an important process in many astrophysical plasmas, which allows restructuring of magnetic fields and conversion of stored magnetic energy into heat and kinetic energy. Turbulence is known to dramatically change different transport processes and therefore it is not unexpected that turbulence can alter the dynamics of magnetic field lines within the reconnection process. We shall review the interaction between turbulence and reconnection at different scales, showing how a state of turbulent reconnection is natural in astrophysical plasmas, with implications for a range of phenomena across astrophysics. We consider the process of magnetic reconnection that is fast in magnetohydrodynamic (MHD) limit and discuss how turbulence—both externally driven and generated in the reconnecting system—can make reconnection independent on the microphysical properties of plasmas. We will also show how relaxation theory can be used to calculate the energy dissipated in turbulent reconnecting fields. As well as heating the plasma, the energy dissipated by turbulent reconnection may cause acceleration of non-thermal particles, which is briefly discussed here.

  9. Notes on Magnetohydrodynamics of Magnetic Reconnection in Turbulent Media

    NASA Astrophysics Data System (ADS)

    Browning, Philippa; Lazarian, Alex

    Astrophysical fluids have very large Reynolds numbers and therefore turbulence is their natural state. Magnetic reconnection is an important process in many astrophysical plasmas, which allows restructuring of magnetic fields and conversion of stored magnetic energy into heat and kinetic energy. Turbulence is known to dramatically change different transport processes and therefore it is not unexpected that turbulence can alter the dynamics of magnetic field lines within the reconnection process. We shall review the interaction between turbulence and reconnection at different scales, showing how a state of turbulent reconnection is natural in astrophysical plasmas, with implications for a range of phenomena across astrophysics. We consider the process of magnetic reconnection that is fast in magnetohydrodynamic (MHD) limit and discuss how turbulence—both externally driven and generated in the reconnecting system—can make reconnection independent on the microphysical properties of plasmas. We will also show how relaxation theory can be used to calculate the energy dissipated in turbulent reconnecting fields. As well as heating the plasma, the energy dissipated by turbulent reconnection may cause acceleration of non-thermal particles, which is briefly discussed here.

  10. Experimental Demonstration of the Collisionless Plasmoid Instability below the Ion Kinetic Scale during Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Olson, J.; Egedal, J.; Greess, S.; Myers, R.; Clark, M.; Endrizzi, D.; Flanagan, K.; Milhone, J.; Peterson, E.; Wallace, J.; Weisberg, D.; Forest, C. B.

    2016-06-01

    The spontaneous formation of magnetic islands is observed in driven, antiparallel magnetic reconnection on the Terrestrial Reconnection Experiment. We here provide direct experimental evidence that the plasmoid instability is active at the electron scale inside the ion diffusion region in a low collisional regime. The experiments show the island formation occurs at a smaller system size than predicted by extended magnetohydrodynamics or fully collisionless simulations. This more effective seeding of magnetic islands emphasizes their importance to reconnection in naturally occurring 3D plasmas.

  11. High power heating of magnetic reconnection in merging tokamak experimentsa)

    NASA Astrophysics Data System (ADS)

    Ono, Y.; Tanabe, H.; Yamada, T.; Gi, K.; Watanabe, T.; , T., Ii; Gryaznevich, M.; Scannell, R.; Conway, N.; Crowley, B.; Michael, C.

    2015-05-01

    Significant ion/electron heating of magnetic reconnection up to 1.2 keV was documented in two spherical tokamak plasma merging experiment on MAST with the significantly large Reynolds number R˜105. Measured 1D/2D contours of ion and electron temperatures reveal clearly energy-conversion mechanisms of magnetic reconnection: huge outflow heating of ions in the downstream and localized heating of electrons at the X-point. Ions are accelerated up to the order of poloidal Alfven speed in the reconnection outflow region and are thermalized by fast shock-like density pileups formed in the downstreams, in agreement with recent solar satellite observations and PIC simulation results. The magnetic reconnection efficiently converts the reconnecting (poloidal) magnetic energy mostly into ion thermal energy through the outflow, causing the reconnection heating energy proportional to square of the reconnecting (poloidal) magnetic field Brec2 ˜ Bp2. The guide toroidal field Bt does not affect the bulk heating of ions and electrons, probably because the reconnection/outflow speeds are determined mostly by the external driven inflow by the help of another fast reconnection mechanism: intermittent sheet ejection. The localized electron heating at the X-point increases sharply with the guide toroidal field Bt, probably because the toroidal field increases electron confinement and acceleration length along the X-line. 2D measurements of magnetic field and temperatures in the TS-3 tokamak merging experiment also reveal the detailed reconnection heating mechanisms mentioned above. The high-power heating of tokamak merging is useful not only for laboratory study of reconnection but also for economical startup and heating of tokamak plasmas. The MAST/TS-3 tokamak merging with Bp > 0.4 T will enables us to heat the plasma to the alpha heating regime: Ti > 5 keV without using any additional heating facility.

  12. Asymmetric Reconnection in the Terrestrial Reconnection EXperiment

    NASA Astrophysics Data System (ADS)

    Olson, Joseph; Egedal, Jan; Forest, Cary; Wallace, John; TREX Team; MPDX Team

    2014-10-01

    The Terrestrial Reconnection EXperiment (TREX) is a new and versatile addition to the Wisconsin Plasma Astrophysics Laboratory (WiPAL) at the University of Wisconsin-Madison. TREX is optimized for the study of kinetic reconnection in various regimes and to provide the first laboratory evidence in support of a new model describing the dynamics of trapped electrons and correlating pressure anisotropy. The initial configuration implemented in TREX is specially designed to study asymmetric reconnection scenarios. These are particularly relevant to the dayside magnetopause in which the plasma beta of the solar wind and of the magnetosphere can differ by factors of 100-1000. The configuration utilizes the Helmholtz coils to produce a static, uniform magnetic field up to 275 G through the 3 m spherical vacuum vessel. Plasma is produced on a 10 s rep rate while two internal coils are pulsed, creating an opposing magnetic field to induce reconnection with asymmetric high and low beta inflows. A Langmuir and Bdot probe array is swept in between pulses to build up the magnetic profiles in the reconnection region. Preliminary data from these initial runs will be presented.

  13. The Fast Plasma Investigation on the Magnetospheric Multiscale Mission

    NASA Astrophysics Data System (ADS)

    Rager, A. C.; Pollock, C. J.; Avanov, L. A.; Barrie, A. C.; Burch, J. L.; Chandler, M. O.; Clark, G. B.; Coffey, V. N.; Dickson, C.; Dorelli, J.; Ergun, R.; Fuselier, S. A.; Gliese, U.; Giles, B. L.; Holland, M. P.; Jacques, A. D.; Kreisler, S.; Lavraud, B.; MacDonald, E.; Mauk, B.; Moore, T. E.; Mukai, T.; Nakamura, R.; Rosnack, T.; Saito, Y.; Salo, C.; Sauvaud, J. A.; Smith, D. L.; Smith, S. E.; Torbert, R. B.; Yokota, S.

    2015-12-01

    Launched in March 2015, the Fast Plasma Investigation (FPI) instrument suite on the Magnetospheric Multiscale Mission (MMS) is producing the highest time and spatial resolution 3D electron and ion particle distribution function measurements to date. During FPI science operations, the four spacecraft maintain a tetrahedral formation such that 3D measurements of the plasma and field gradients are enabled. This allows the spacecraft to better investigate reconnection and to distinguish between spatial and temporal structures. In the first three months, we expect to observe magnetic phenomena such as dipolarization fronts, the plasma sheet boundary layer, magnetopause crossings, ion dispersive signatures of from remote reconnection sites, and magnetic holes. This poster is intended to supplement the invited talk on FPI results by Pollock et al. by providing further detail of the instrumentation and calibration, as well as a sampling of early magnetospheric plasma observations in the evening-side magnetotail, dusk flank, and afternoon magnetopause.

  14. Crustal Thickness and Moho Character of the Fast-Spreading East Pacific Rise Between 9º37.5'N and 9º57'N From Poststack and Prestack Time Migrated 3D MCS data

    NASA Astrophysics Data System (ADS)

    Nedimovic, M. R.; Aghaei, O.; Carbotte, S. M.; Carton, H. D.; Canales, J. P.

    2014-12-01

    We measured crustal thickness and mapped Moho transition zone (MTZ) character over an 880 km2 section of the fast-spreading East Pacific Rise (EPR) using the first full 3D multichannel seismic (MCS) dataset collected across a mid-ocean ridge (MOR). The 9°42'-9°57'N area was initially investigated using 3D poststack time migration, which was followed by application of 3D prestack time migration (PSTM) to the whole dataset. This first attempt at applying 3D PSTM to MCS data from a MOR environment resulted in the most detailed reflection images of a spreading center to date. MTZ reflections are for the first time imaged below the ridge axis away from axial discontinuities indicating that Moho is formed at zero age at least at some sections of the MOR system. The average crustal thickness and crustal velocity derived from PSTM are 5920±320 m and 6320±290 m/s, respectively. The average crustal thickness varies little from Pacific to Cocos plate suggesting mostly uniform crustal production in the last ~180 Ka. However, the crust thins by ~400 m from south to north. The MTZ reflections were imaged within ~92% of the study area, with ~66% of the total characterized by impulsive reflections interpreted to originate from a thin MTZ and 26% characterized by diffusive reflections interpreted to originate from a thick MTZ. The MTZ is dominantly diffusive at the southern (9°37.5'-9°40'N) and northern (9°51'-9°57'N) ends of the study area, and it is impulsive in the central region (9°42'-9°51'N). No data were collected between 9°40'N and 9°42'N. More efficient mantle melt extraction is inferred within the central region with greater proportion of the lower crust accreted from the axial magma lens than within the northern and southern sections. This along-axis variation in the crustal accretion style may be caused by interaction between the melt sources for the ridge and the local seamounts, which are present within the northern and southern survey sections. Third

  15. Radiochromic 3D Detectors

    NASA Astrophysics Data System (ADS)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  16. Interchange Reconnection and Coronal Hole Dynamics

    NASA Technical Reports Server (NTRS)

    Edmondson, J. K.; Antiochos, S. K.; DeVore, C. R.; Lynch, B. J.; Zurbuchen, T. H.

    2011-01-01

    We investigate the effect of magnetic reconnection between open and closed field, (often referred to as "interchange" reconnection), on the dynamics and topology of coronal hole boundaries. The most important and most prevalent 3D topology of the interchange process is that of a small-scale bipolar magnetic field interacting with a large-scale background field. We determine the evolution of such a magnetic topology by numerical solution of the fully 3D MHD equations in spherical coordinates. First, we calculate the evolution of a small-scale bipole that initially is completely inside an open field region and then is driven across a coronal hole boundary by photospheric motions. Next the reverse situation is calculated in which the bipole is initially inside the closed region and driven toward the coronal hole boundary. In both cases we find that the stress imparted by the photospheric motions results in deformation of the separatrix surface between the closed field of the bipole and the background field, leading to rapid current sheet formation and to efficient reconnection. When the bipole is inside the open field region, the reconnection is of the interchange type in that it exchanges open and closed field. We examine, in detail, the topology of the field as the bipole moves across the coronal hole boundary, and find that the field remains well-connected throughout this process. Our results imply that open flux cannot penetrate deeply into the closed field region below a helmet streamer and, hence, support the quasi-steady models in which open and closed flux remain topologically distinct. Our results also support the uniqueness hypothesis for open field regions as postulated by Antiochos et al. We discuss the implications of this work for coronal observations. Subject Headings: Sun: corona Sun: magnetic fields Sun: reconnection Sun: coronal hole

  17. Observed Aspects of Reconnection in Solar Eruptions

    NASA Technical Reports Server (NTRS)

    Moore, Ronald L.

    2010-01-01

    Signatures of reconnection in major CME (coronal mass ejection)/flare eruptions and in coronal X-ray jets are illustrated and interpreted. The signatures are magnetic field lines and their feet that brighten in flare emission. CME/flare eruptions are magnetic explosions in which: 1. The field that erupts is initially a closed arcade. 2. At eruption onset, most of the free magnetic energy to be released is not stored in field bracketing a current sheet, but in sheared field in the core of the arcade. 3. The sheared core field erupts by a process that from its start or soon after involves fast tether-cutting reconnection at an initially small current sheet low in the sheared core field. If the arcade has oppositely-directed field over it, the eruption process from its start or soon after also involves fast breakout reconnection at an initially small current sheet between the arcade and the overarching field. These aspects are shown by the small area of the bright field lines and foot-point flare ribbons in the onset of the eruption. 4. At either small current sheet, the fast reconnection progressively unleashes the erupting core field to erupt with progressively greater force. In turn, the erupting core field drives the current sheet to become progressively larger and to undergo progressively greater fast reconnection in the explosive phase of the eruption, and the flare arcade and ribbons grow to become comparable to the pre-eruption arcade in lateral extent. In coronal X-ray jets: 1. The magnetic energy released in the jet is built up by the emergence of a magnetic arcade into surrounding unipolar "open" field. 2. A simple jet is produced when a burst of reconnection occurs at the current sheet between the arcade and the open field. This produces a bright reconnection jet and a bright reconnection arcade that are both much smaller in diameter that the driving arcade. 3. A more complex jet is produced when the arcade has a sheared core field and undergoes an

  18. Theory and Simulations of Incomplete Reconnection During Sawteeth Due to Diamagnetic Effects

    NASA Astrophysics Data System (ADS)

    Beidler, Matthew Thomas

    Tokamaks use magnetic fields to confine plasmas to achieve fusion; they are the leading approach proposed for the widespread production of fusion energy. The sawtooth crash in tokamaks limits the core temperature, adversely impacts confinement, and seeds disruptions. Adequate knowledge of the physics governing the sawtooth crash and a predictive capability of its ramifications has been elusive, including an understanding of incomplete reconnection, i.e., why sawteeth often cease prematurely before processing all available magnetic flux. In this dissertation, we introduce a model for incomplete reconnection in sawtooth crashes resulting from increasing diamagnetic effects in the nonlinear phase of magnetic reconnection. Physically, the reconnection inflow self-consistently convects the high pressure core of a tokamak toward the q=1 rational surface, thereby increasing the pressure gradient at the reconnection site. If the pressure gradient at the rational surface becomes large enough due to the self-consistent evolution, incomplete reconnection will occur due to diamagnetic effects becoming large enough to suppress reconnection. Predictions of this model are borne out in large-scale proof-of-principle two-fluid simulations of reconnection in a 2D slab geometry and are also consistent with data from the Mega Ampere Spherical Tokamak (MAST). Additionally, we present simulations from the 3D extended-MHD code M3D-C1 used to study the sawtooth crash in a 3D toroidal geometry for resistive-MHD and two-fluid models. This is the first study in a 3D tokamak geometry to show that the inclusion of two-fluid physics in the model equations is essential for recovering timescales more closely in line with experimental results compared to resistive-MHD and contrast the dynamics in the two models. We use a novel approach to sample the data in the plane of reconnection perpendicular to the (m,n)=(1,1) mode to carefully assess the reconnection physics. Using local measures of

  19. Optimal arrangements of fiber optic probes to enhance the spatial resolution in depth for 3D reflectance diffuse optical tomography with time-resolved measurements performed with fast-gated single-photon avalanche diodes

    NASA Astrophysics Data System (ADS)

    Puszka, Agathe; Di Sieno, Laura; Dalla Mora, Alberto; Pifferi, Antonio; Contini, Davide; Boso, Gianluca; Tosi, Alberto; Hervé, Lionel; Planat-Chrétien, Anne; Koenig, Anne; Dinten, Jean-Marc

    2014-02-01

    Fiber optic probes with a width limited to a few centimeters can enable diffuse optical tomography (DOT) in intern organs like the prostate or facilitate the measurements on extern organs like the breast or the brain. We have recently shown on 2D tomographic images that time-resolved measurements with a large dynamic range obtained with fast-gated single-photon avalanche diodes (SPADs) could push forward the imaged depth range in a diffusive medium at short source-detector separation compared with conventional non-gated approaches. In this work, we confirm these performances with the first 3D tomographic images reconstructed with such a setup and processed with the Mellin- Laplace transform. More precisely, we investigate the performance of hand-held probes with short interfiber distances in terms of spatial resolution and specifically demonstrate the interest of having a compact probe design featuring small source-detector separations. We compare the spatial resolution obtained with two probes having the same design but different scale factors, the first one featuring only interfiber distances of 15 mm and the second one, 10 mm. We evaluate experimentally the spatial resolution obtained with each probe on the setup with fast-gated SPADs for optical phantoms featuring two absorbing inclusions positioned at different depths and conclude on the potential of short source-detector separations for DOT.

  20. Bootstrapping 3D fermions

    NASA Astrophysics Data System (ADS)

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-01

    We study the conformal bootstrap for a 4-point function of fermions < ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge C T . We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N . We also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  1. Formation of Plasmoid Chains in Magnetic Reconnection

    SciTech Connect

    Samtaney, R.; Loureiro, N. F.; Uzdensky, D. A.; Schekochihin, A. A.; Cowley, S. C.

    2009-09-09

    A detailed numerical study of magnetic reconnection in resistive MHD for very large, previously inaccessible, Lundquist numbers (104 ≤ S ≤ 108) is reported. Large-aspect-ratio Sweet-Parker current sheets are shown to be unstable to super-Alfvenically fast formation of plasmoid (magnetic-island) chains. The plasmoid number scales as S3/8 and the instability growth rate in the linear stage as S1/4, in agreement with the theory by Loureiro et al. [Phys. Plasmas 14, 100703 (2007)]. In the nonlinear regime, plasmoids continue to grow faster than they are ejected and completely disrupt the reconnection layer. These results suggest that high-Lundquist-number reconnection is inherently time-dependent and hence call for a substantial revision of the standard Sweet-Parker quasistationary picture for S>104.

  2. Nonlinear regimes of forced magnetic reconnection

    SciTech Connect

    Vekstein, G.; Kusano, K.

    2015-09-15

    This letter presents a self-consistent description of nonlinear forced magnetic reconnection in Taylor's model of this process. If external boundary perturbation is strong enough, nonlinearity in the current sheet evolution becomes important before resistive effects come into play. This terminates the current sheet shrinking that takes place at the linear stage and brings about its nonlinear equilibrium with a finite thickness. Then, in theory, this equilibrium is destroyed by a finite plasma resistivity during the skin-time, and further reconnection proceeds in the Rutherford regime. However, realization of such a scenario is unlikely because of the plasmoid instability, which is fast enough to develop before the transition to the Rutherford phase occurs. The suggested analytical theory is entirely different from all previous studies and provides proper interpretation of the presently available numerical simulations of nonlinear forced magnetic reconnection.

  3. Fabrication of 3D Silicon Sensors

    SciTech Connect

    Kok, A.; Hansen, T.E.; Hansen, T.A.; Lietaer, N.; Summanwar, A.; Kenney, C.; Hasi, J.; Da Via, C.; Parker, S.I.; /Hawaii U.

    2012-06-06

    Silicon sensors with a three-dimensional (3-D) architecture, in which the n and p electrodes penetrate through the entire substrate, have many advantages over planar silicon sensors including radiation hardness, fast time response, active edge and dual readout capabilities. The fabrication of 3D sensors is however rather complex. In recent years, there have been worldwide activities on 3D fabrication. SINTEF in collaboration with Stanford Nanofabrication Facility have successfully fabricated the original (single sided double column type) 3D detectors in two prototype runs and the third run is now on-going. This paper reports the status of this fabrication work and the resulted yield. The work of other groups such as the development of double sided 3D detectors is also briefly reported.

  4. Boosting magnetic reconnection by viscosity and thermal conduction

    NASA Astrophysics Data System (ADS)

    Minoshima, Takashi; Miyoshi, Takahiro; Imada, Shinsuke

    2016-07-01

    Nonlinear evolution of magnetic reconnection is investigated by means of magnetohydrodynamic simulations including uniform resistivity, uniform viscosity, and anisotropic thermal conduction. When viscosity exceeds resistivity (the magnetic Prandtl number P r m > 1 ), the viscous dissipation dominates outflow dynamics and leads to the decrease in the plasma density inside a current sheet. The low-density current sheet supports the excitation of the vortex. The thickness of the vortex is broader than that of the current for P r m > 1 . The broader vortex flow more efficiently carries the upstream magnetic flux toward the reconnection region, and consequently, boosts the reconnection. The reconnection rate increases with viscosity provided that thermal conduction is fast enough to take away the thermal energy increased by the viscous dissipation (the fluid Prandtl number Pr < 1). The result suggests the need to control the Prandtl numbers for the reconnection against the conventional resistive model.

  5. Small-Scale Magnetic Reconnection at Equatorial Coronal Hole Boundaries

    NASA Astrophysics Data System (ADS)

    Lamb, Derek; DeForest, C. E.

    2011-05-01

    Coronal holes have long been known to be the source of the fast solar wind at both high and low latitudes. The equatorial extensions of polar coronal holes have long been assumed to have substantial magnetic reconnection at their boundaries, because they rotate more rigidly than the underlying photosphere. However, evidence for this reconnection has been sparse until very recently. We present some evidence that reconnection due to the evolution of small-scale magnetic fields may be sufficient to drive coronal hole boundary evolution. We hypothesize that a bias in the direction of that reconnection is sufficient to give equatorial coronal holes their rigid rotation. We discuss the prospects for investigating this using FLUX, a reconnection-controlled coronal MHD simulation framework. This work was funded by the NASA SHP-GI program.

  6. Aspiration-induced reconnection in spatial public-goods game

    NASA Astrophysics Data System (ADS)

    Zhang, Hai-Feng; Liu, Run-Ran; Wang, Zhen; Yang, Han-Xin; Wang, Bing-Hong

    2011-04-01

    In this letter, we introduce an aspiration-induced reconnection mechanism into the spatial public-goods game. A player will reconnect to a randomly chosen player if its payoff acquired from the group centered on the neighbor does not exceed the aspiration level. We find that an intermediate aspiration level can promote cooperation best. This optimal phenomenon can be explained by a negative feedback effect, namely, intermediate aspiration level is able to result in a weak peak of reconnection, which will effectively change the downfall of cooperators and facilitate the fast spreading of cooperation. While insufficient reconnection and excessive reconnection induced by low and high aspiration levels are not conductive to such an effect. Moreover, we find that the intermediate aspiration level can lead to the heterogeneous distribution of degree, which will be beneficial to the evolution of cooperation.

  7. Entropy conservation in simulations of magnetic reconnection

    SciTech Connect

    Birn, J.; Hesse, M.; Schindler, K.

    2006-09-15

    Entropy and mass conservation are investigated for the dynamic field evolution associated with fast magnetic reconnection, based on the 'Newton Challenge' problem [Birn et al., Geophys. Res. Lett. 32, L06105 (2005)]. In this problem, the formation of a thin current sheet and magnetic reconnection are initiated in a plane Harris-type current sheet by temporally limited, spatially varying, inflow of magnetic flux. Using resistive magnetohydrodynamic (MHD) and particle-in-cell (PIC) simulations, specifically the entropy and mass integrated along the magnetic flux tubes are compared between the simulations. In the MHD simulation these should be exactly conserved quantities, when slippage and Ohmic dissipation are negligible. It is shown that there is very good agreement between the conservation of these quantities in the two simulation approaches, despite the effects of dissipation, provided that the resistivity in the MHD simulation is strongly localized. This demonstrates that dissipation is highly localized in the PIC simulation also, and that heat flux across magnetic flux tubes has negligible effect as well, so that the entropy increase on a full flux tube remains small even during reconnection. The mass conservation also implies that the frozen-in flux condition of ideal MHD is a good integral approximation outside the reconnection site. This result lends support for using the entropy-conserving MHD approach not only before and after reconnection but even as a constraint connecting the two phases.

  8. Dynamics of a reconnection-driven runaway ion tail in a reversed field pinch plasma

    NASA Astrophysics Data System (ADS)

    Anderson, Jay

    2015-11-01

    Non-collisional heating and energization of ions is a powerful process in reversed-field pinch (RFP) plasmas and in many astrophysical settings. Tearing activity in the RFP (including linearly and nonlinearly driven modes which span the plasma column) saturates through dynamo-like feedback on the current density profile, rapidly releasing magnetic energy and inducing a strong impulsive, parallel-to-B electric field as poloidal magnetic flux is converted to toroidal flux. The global reconnection leads to strong ion heating with a known anisotropy in temperature (T⊥ >T| |), suggestive of a perpendicular bulk heating mechanism. In the subset of strongest reconnection events, multiple mechanisms combine to create a most interesting ion distribution. Runaway of the reduced-friction naturally-heated ions generates an asymmetric ion tail with E|| >>E⊥ . The tail is reinforced by a confinement asymmetry where runaway ions approach the limit of classical cross-field transport despite magnetic stochasticity from the broad spectrum of tearing modes. Confinement is lower in other regions of the v⊥ /v| | plane and reduces to Rechester-Rosenbluth-like transport experienced by thermal particles. Experiments with neutral beam injection elegantly confirm the ion runaway process and fast ion confinement characteristics in MST. Neutral particle analyzers measure an unrestricted parallel acceleration of the fast test particle distribution during the reconnection event. The energy gain is larger for higher initial ion energy (reduced drag), and deceleration is observed with reversed electric field (counter-current injection) according to runaway dynamics and confirmed with Fokker-Planck modeling. Full orbit test particle tracing in the 3D time evolving electric and magnetic fields (from visco-resistive MHD simulations) corroborates the understanding of fast ion confinement. Work supported by by US DoE and NSF.

  9. A Rosetta Stone for in situ Observations of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Scudder, J. D.; Daughton, W. S.; Karimabadi, H.; Roytershteyn, V.

    2015-12-01

    Local conditions that constrain the physics of magnetic reconnection in space in 3D will be discussed, including those observable conditions presently used and new ones that enhance experimental closure. Three classes of tests will be discussed: i) proxies for unmeasurable theoretical properties II) observable properties satisfied by all layers that pass mass flux, including those of the reconnection layer, and (iii) observable kinetic tests that are increasingly peculiar to collisionless magnetic reconnection. A Rosetta Stone of state of the art observables will be proposed, including proxies for unmeasurable theoretical local rate of frozen flux violation and measures of the significance of frozen flux encountered. A suite of kinetic observables involving properties peculiar to electrons will also be demonstrated as promising litmus tests for certifying sites of collisionless magnetic reconnection.

  10. Direct evidence for kinetic effects associated with solar wind reconnection.

    PubMed

    Xu, Xiaojun; Wang, Yi; Wei, Fengsi; Feng, Xueshang; Deng, Xiaohua; Ma, Yonghui; Zhou, Meng; Pang, Ye; Wong, Hon-Cheng

    2015-01-01

    Kinetic effects resulting from the two-fluid physics play a crucial role in the fast collisionless reconnection, which is a process to explosively release massive energy stored in magnetic fields in space and astrophysical plasmas. In-situ observations in the Earth's magnetosphere provide solid consistence with theoretical models on the point that kinetic effects are required in the collisionless reconnection. However, all the observations associated with solar wind reconnection have been analyzed in the context of magnetohydrodynamics (MHD) although a lot of solar wind reconnection exhausts have been reported. Because of the absence of kinetic effects and substantial heating, whether the reconnections are still ongoing when they are detected in the solar wind remains unknown. Here, by dual-spacecraft observations, we report a solar wind reconnection with clear Hall magnetic fields. Its corresponding Alfvenic electron outflow jet, derived from the decouple between ions and electrons, is identified, showing direct evidence for kinetic effects that dominate the collisionless reconnection. The turbulence associated with the exhaust is a kind of background solar wind turbulence, implying that the reconnection generated turbulence has not much developed. PMID:25628139

  11. Direct evidence for kinetic effects associated with solar wind reconnection

    PubMed Central

    Xu, Xiaojun; Wang, Yi; Wei, Fengsi; Feng, Xueshang; Deng, Xiaohua; Ma, Yonghui; Zhou, Meng; Pang, Ye; Wong, Hon-Cheng

    2015-01-01

    Kinetic effects resulting from the two-fluid physics play a crucial role in the fast collisionless reconnection, which is a process to explosively release massive energy stored in magnetic fields in space and astrophysical plasmas. In-situ observations in the Earth's magnetosphere provide solid consistence with theoretical models on the point that kinetic effects are required in the collisionless reconnection. However, all the observations associated with solar wind reconnection have been analyzed in the context of magnetohydrodynamics (MHD) although a lot of solar wind reconnection exhausts have been reported. Because of the absence of kinetic effects and substantial heating, whether the reconnections are still ongoing when they are detected in the solar wind remains unknown. Here, by dual-spacecraft observations, we report a solar wind reconnection with clear Hall magnetic fields. Its corresponding Alfvenic electron outflow jet, derived from the decouple between ions and electrons, is identified, showing direct evidence for kinetic effects that dominate the collisionless reconnection. The turbulence associated with the exhaust is a kind of background solar wind turbulence, implying that the reconnection generated turbulence has not much developed. PMID:25628139

  12. Plasma Compression in Magnetic Reconnection Regions in the Solar Corona

    NASA Astrophysics Data System (ADS)

    Provornikova, E.; Laming, J. M.; Lukin, V. S.

    2016-07-01

    It has been proposed that particles bouncing between magnetized flows converging in a reconnection region can be accelerated by the first-order Fermi mechanism. Analytical considerations of this mechanism have shown that the spectral index of accelerated particles is related to the total plasma compression within the reconnection region, similarly to the case of the diffusive shock acceleration mechanism. As a first step to investigate the efficiency of Fermi acceleration in reconnection regions in producing hard energy spectra of particles in the solar corona, we explore the degree of plasma compression that can be achieved at reconnection sites. In particular, we aim to determine the conditions for the strong compressions to form. Using a two-dimensional resistive MHD numerical model, we consider a set of magnetic field configurations where magnetic reconnection can occur, including a Harris current sheet, a force-free current sheet, and two merging flux ropes. Plasma parameters are taken to be characteristic of the solar corona. Numerical simulations show that strong plasma compressions (≥4) in the reconnection regions can form when the plasma heating due to reconnection is efficiently removed by fast thermal conduction or the radiative cooling process. The radiative cooling process that is negligible in the typical 1 MK corona can play an important role in the low corona/transition region. It is found that plasma compression is expected to be strongest in low-beta plasma β ˜ 0.01–0.07 at reconnection magnetic nulls.

  13. Final Report Experimental Study of Impulsive Reconnection in a Current Carrying Magnetic Arcade

    SciTech Connect

    Craig, Darren

    2011-10-27

    The Wheaton Impulsive Reconnection Experiment (WIRX) is a new experiment now underway at Wheaton College for the study of magnetic reconnection. The experiment is composed of two parallel electrodes, linked by a magnetic arcade that is generated by a coil surrounding the electrodes. Current is driven along the arcade from one electrode to another. When enough current is driven, the arcade is expected to disrupt or segment by reconnection allowing a study of 3D reconnection. This report is the final report for a three year grant period.

  14. Shocks produced by impulsively driven reconnection. [during solar flares or emergence of magnetic flux from photosphere into corona

    NASA Technical Reports Server (NTRS)

    Forbes, T. G.

    1988-01-01

    Shock waves produced by impulsively driven reconnection are investigated by carrying out numerical experiments using two-dimensional magnetohydrodynamics. The results of the numerical experiments imply that there are three different categories of shocks associated with impulsively driven reconnection: (1) fast-mode, blast waves which rapidly propagate away from the reconnection site; (2) slow-mode, Petschek shocks which are attached to the reconnection site; and (3) fast-mode, termination shocks which terminate the plasma jets flowing out from the reconnection site.

  15. Earth Reconnect -- July 2012

    NASA Video Gallery

    A visualization of Earth's magnetosphere on July 15-16, 2012, shows how constant magnetic reconnection caused by an arriving coronal mass ejection, or CME, from the sun disrupted the magnetosphere,...

  16. THEMIS Sees Magnetic Reconnection

    NASA Video Gallery

    THEMIS observations confirm for the first time that magnetic reconnection in the magnetotail triggers the onset of substorms. Substorms are the sudden violent eruptions of space weather that releas...

  17. Model of Hall reconnection.

    PubMed

    Malyshkin, Leonid M

    2008-11-28

    The rate of quasistationary, two-dimensional magnetic reconnection is calculated in the framework of incompressible Hall magnetohydrodynamics, which includes the Hall and electron pressure terms in Ohm's law. The Hall-magnetohydrodynamics equations are solved in a local region across the reconnection electron layer, including only the upstream region and the layer center. In the case when the ion inertial length di is larger than the Sweet-Parker reconnection layer thickness, the dimensionless reconnection rate is found to be independent of the electrical resistivity and equal to di/L, where L is the scale length of the external magnetic field in the upstream region outside the electron layer and the ion layer thickness is found to be di. PMID:19113486

  18. Model of Hall Reconnection

    SciTech Connect

    Malyshkin, Leonid M.

    2008-11-28

    The rate of quasistationary, two-dimensional magnetic reconnection is calculated in the framework of incompressible Hall magnetohydrodynamics, which includes the Hall and electron pressure terms in Ohm's law. The Hall-magnetohydrodynamics equations are solved in a local region across the reconnection electron layer, including only the upstream region and the layer center. In the case when the ion inertial length d{sub i} is larger than the Sweet-Parker reconnection layer thickness, the dimensionless reconnection rate is found to be independent of the electrical resistivity and equal to d{sub i}/L, where L is the scale length of the external magnetic field in the upstream region outside the electron layer and the ion layer thickness is found to be d{sub i}.

  19. 3D microscope

    NASA Astrophysics Data System (ADS)

    Iizuka, Keigo

    2008-02-01

    In order to circumvent the fact that only one observer can view the image from a stereoscopic microscope, an attachment was devised for displaying the 3D microscopic image on a large LCD monitor for viewing by multiple observers in real time. The principle of operation, design, fabrication, and performance are presented, along with tolerance measurements relating to the properties of the cellophane half-wave plate used in the design.

  20. Role of Magnetic Diffusion Induced by Turbulent Magnetic Reconnection for Star Formation

    NASA Astrophysics Data System (ADS)

    Lazarian, Alex; Santos de Lima, R.; de Gouveia Dal Pino, E.

    2010-01-01

    The diffusion of astrophysical magnetic fields in conducting fluids in the presence of turbulence depends on whether magnetic fields can change their topology or reconnect in highly conducting media. Recent progress in understanding fast magnetic reconnection in the presence of turbulence is reassuring that the magnetic field behavior in the computer simulations and turbulent astrophysical environments is similar, as far as the magnetic reconnection is concerned. This makes it meaningful to perform MHD simulations of turbulent flows in order to understand the diffusion of magnetic field in astrophysical environments. Our study of magnetic field diffusion reveals important propertie s of the process. First of all, our 3D MHD simulations initiated with anti-correlating magnetic field and gaseous density exhibit at later times a decorrelation of the magnetic field and density, which corresponds well to the observations of the interstellar media. In the presence of gravity, our 3D simulations show the decrease of the flux to mass ratio with density concentration when turbulence is present. We observe this effect both in the situations when we start with the equilibrium distributions of gas and magnetic field and when we start with collapsing dynamically unstable configurations. Thus the process of turbulent magnetic field removal should be applicable both to quasistatic subcritical molecular clouds and cores and violently collapsing supercritical entities. The increase of the gravitational potential as well as the magnetization of the gas increases the segregation of the mass and flux in the saturated final state of simulations, supporting the notion that turbulent diffusivity relaxes the magnetic field + gas system in the gravitational field to its minimal energy state. At the same time, turbulence of high level may get the system unbound making the flux to mass ratio more uniform through the simulation box.

  1. Comparison of Secondary Islands in Collisional Reconnection to Hall Reconnection

    SciTech Connect

    Shepherd, L. S.; Cassak, P. A.

    2010-07-02

    Large-scale resistive Hall-magnetohydrodynamic simulations of the transition from Sweet-Parker (collisional) to Hall (collisionless) magnetic reconnection are presented; the first to separate secondary islands from collisionless effects. Three main results are described. There exists a regime with secondary islands but without collisionless effects, and the reconnection rate is faster than Sweet-Parker, but significantly slower than Hall reconnection. This implies that secondary islands do not cause the fastest reconnection rates. The onset of Hall reconnection ejects secondary islands from the vicinity of the X line, implying that energy is released more rapidly during Hall reconnection. Coronal applications are discussed.

  2. On the relationship between quadrupolar magnetic field and collisionless reconnection

    SciTech Connect

    Smets, R. Belmont, G.; Aunai, N.; Boniface, C.

    2014-06-15

    Using hybrid simulations, we investigate the onset of fast reconnection between two cylindrical magnetic shells initially close to each other. This initial state mimics the plasma structure in High Energy Density Plasmas induced by a laser-target interaction and the associated self-generated magnetic field. We clearly observe that the classical quadrupolar structure of the out-of-plane magnetic field appears prior to the reconnection onset. Furthermore, a parametric study reveals that, with a non-coplanar initial magnetic topology, the reconnection onset is delayed and possibly suppressed. The relation between the out-of-plane magnetic field and the out-of-plane electric field is discussed.

  3. Three-dimensional, Impulsive Magnetic Reconnection in a Laboratory Plasma

    SciTech Connect

    S Dorfman, et al

    2013-05-03

    Impulsive, local, 3-D reconnection is identified for the first time in a laboratory current sheet. The events observed in the Magnetic Reconnection Experiment (MRX) are characterized by large local gradients in the third direction and cannot be explained by 2-D models. Detailed measurements show that the ejection of flux rope structures from the current sheet plays a key role in these events. By contrast, even though electromagnetic fluctuations in the lower hybrid frequency range are also observed concurrently with the impulsive behavior, they are not the key physics responsible. A qualitative, 3-D, two-fluid model is proposed to explain the observations. The experimental results may be particularly applicable to space and astrophysical plasmas where impulsive reconnection occurs.

  4. Numerical simulations of multiple X-line reconnection in the dayside magnetopause

    NASA Astrophysics Data System (ADS)

    Kondoh, K.

    2015-12-01

    We study about the magnetic reconnection evolutions in the dayside geomagnetopause using the MHD numerical simulations on the basis of the spontaneous fast magnetic reconnection model. In this spontaneous reconnection model, the diffusion region is localized and the magnetic reconnection drastically evolves by the positive feedback between the growths of the macroscopic plasma flow and the microscopic resistivity. The localized diffusion region eventually becomes longer in the directions of the reconnection outflow. Then, the secondary reconnection occurs to divide into the two diffusion regions before forming the Sweet-Parker type diffusion region. In this term, background sheath flow helps stretching of the diffusion region and causes the difference of the strength of the reconnection rate at the each x-line.

  5. Explosive Turbulent Magnetic Reconnection: A New Approach of MHD-Turbulent Simulation

    NASA Astrophysics Data System (ADS)

    Hoshino, Masahiro; Yokoi, Nobumitsu; Higashimori, Katsuaki

    2013-04-01

    Turbulent flows are often observed in association with magnetic reconnection in space and astrophysical plasmas, and it is often hypothesized that the turbulence can contribute to the fast magnetic reconnection through the enhancement of magnetic dissipation. In this presentation, we demonstrate that an explosive turbulent reconnection can happen by using a new turbulent MHD simulation, in which the evolution of the turbulent transport coefficients are self-consistently solved together with the standard MHD equations. In our model, the turbulent electromotive force defined by the correlation of turbulent fluctuations between v and B is added to the Ohm's law. We discuss that the level of turbulent can control the topology of reconnection, namely the transition from the Sweet-Parker reconnection to the Petscheck reconnection occurs when the level of fluctuations becomes of order of the ambient physical quantities, and show that the growth of the turbulent Petscheck reconnection becomes much faster than the conventional one.

  6. Automatic needle segmentation in 3D ultrasound images using 3D Hough transform

    NASA Astrophysics Data System (ADS)

    Zhou, Hua; Qiu, Wu; Ding, Mingyue; Zhang, Songgeng

    2007-12-01

    3D ultrasound (US) is a new technology that can be used for a variety of diagnostic applications, such as obstetrical, vascular, and urological imaging, and has been explored greatly potential in the applications of image-guided surgery and therapy. Uterine adenoma and uterine bleeding are the two most prevalent diseases in Chinese woman, and a minimally invasive ablation system using an RF button electrode which is needle-like is being used to destroy tumor cells or stop bleeding currently. Now a 3D US guidance system has been developed to avoid accidents or death of the patient by inaccurate localizations of the electrode and the tumor position during treatment. In this paper, we described two automated techniques, the 3D Hough Transform (3DHT) and the 3D Randomized Hough Transform (3DRHT), which is potentially fast, accurate, and robust to provide needle segmentation in 3D US image for use of 3D US imaging guidance. Based on the representation (Φ , θ , ρ , α ) of straight lines in 3D space, we used the 3DHT algorithm to segment needles successfully assumed that the approximate needle position and orientation are known in priori. The 3DRHT algorithm was developed to detect needles quickly without any information of the 3D US images. The needle segmentation techniques were evaluated using the 3D US images acquired by scanning water phantoms. The experiments demonstrated the feasibility of two 3D needle segmentation algorithms described in this paper.

  7. Reconnection and interchange instability in the near magnetotail

    DOE PAGESBeta

    Birn, Joachim; Liu, Yi -Hsin; Daughton, William; Hesse, Michael; Schindler, Karl

    2015-07-16

    This paper provides insights into the possible coupling between reconnection and interchange/ballooning in the magnetotail related to substorms and flow bursts. The results presented are largely based on recent simulations of magnetotail dynamics, exploring onset and progression of reconnection. 2.5-dimensional particle-in-cell (PIC) simulations with different tail deformation demonstrate a clear boundary between stable and unstable cases depending on the amount of deformation, explored up to the real proton/electron mass ratio. The evolution prior to onset, as well as the evolution of stable cases, are governed by the conservation of integral flux tube entropy S as imposed in ideal MHD, maintainingmore » a monotonic increase with distance downtail. This suggests that ballooning instability in the tail should not be expected prior to the onset of tearing and reconnection. 3-D MHD simulations confirm this conclusion, showing no indication of ballooning prior to reconnection, if the initial state is ballooning stable. The simulation also shows that, after imposing resistivity necessary to initiate reconnection, the reconnection rate and energy release initially remain slow. However, when S becomes reduced from plasmoid ejection and lobe reconnection, forming a negative slope in S as a function of distance from Earth, the reconnection rate and energy release increase drastically. The latter condition has been shown to be necessary for ballooning/interchange instability, and the cross-tail structures that develop subsequently in the MHD simulation are consistent with such modes. The simulations support a concept in which tail activity is initiated by tearing instability but significantly enhanced by the interaction with ballooning/interchange enabled by plasmoid loss and lobe reconnection.« less

  8. Reconnection and interchange instability in the near magnetotail

    SciTech Connect

    Birn, Joachim; Liu, Yi -Hsin; Hesse, Michael

    2015-07-16

    This paper provides insights into the possible coupling between reconnection and interchange/ballooning in the magnetotail related to substorms and flow bursts. The results presented are largely based on recent simulations of magnetotail dynamics, exploring onset and progression of reconnection. 2.5-dimensional particle-in-cell (PIC) simulations with different tail deformation demonstrate a clear boundary between stable and unstable cases depending on the amount of deformation, explored up to the real proton/electron mass ratio. The evolution prior to onset, as well as the evolution of stable cases, are governed by the conservation of integral flux tube entropy S as imposed in ideal MHD, maintaining a monotonic increase with distance downtail. This suggests that ballooning instability in the tail should not be expected prior to the onset of tearing and reconnection. 3-D MHD simulations confirm this conclusion, showing no indication of ballooning prior to reconnection, if the initial state is ballooning stable. The simulation also shows that, after imposing resistivity necessary to initiate reconnection, the reconnection rate and energy release initially remain slow. However, when S becomes reduced from plasmoid ejection and lobe reconnection, forming a negative slope in S as a function of distance from Earth, the reconnection rate and energy release increase drastically. The latter condition has been shown to be necessary for ballooning/interchange instability, and the cross-tail structures that develop subsequently in the MHD simulation are consistent with such modes. The simulations support a concept in which tail activity is initiated by tearing instability but significantly enhanced by the interaction with ballooning/interchange enabled by plasmoid loss and lobe reconnection.

  9. Multiviewer 3D monitor

    NASA Astrophysics Data System (ADS)

    Kostrzewski, Andrew A.; Aye, Tin M.; Kim, Dai Hyun; Esterkin, Vladimir; Savant, Gajendra D.

    1998-09-01

    Physical Optics Corporation has developed an advanced 3-D virtual reality system for use with simulation tools for training technical and military personnel. This system avoids such drawbacks of other virtual reality (VR) systems as eye fatigue, headaches, and alignment for each viewer, all of which are due to the need to wear special VR goggles. The new system is based on direct viewing of an interactive environment. This innovative holographic multiplexed screen technology makes it unnecessary for the viewer to wear special goggles.

  10. 3D Audio System

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Ames Research Center research into virtual reality led to the development of the Convolvotron, a high speed digital audio processing system that delivers three-dimensional sound over headphones. It consists of a two-card set designed for use with a personal computer. The Convolvotron's primary application is presentation of 3D audio signals over headphones. Four independent sound sources are filtered with large time-varying filters that compensate for motion. The perceived location of the sound remains constant. Possible applications are in air traffic control towers or airplane cockpits, hearing and perception research and virtual reality development.

  11. 3D-printed bioanalytical devices

    NASA Astrophysics Data System (ADS)

    Bishop, Gregory W.; Satterwhite-Warden, Jennifer E.; Kadimisetty, Karteek; Rusling, James F.

    2016-07-01

    While 3D printing technologies first appeared in the 1980s, prohibitive costs, limited materials, and the relatively small number of commercially available printers confined applications mainly to prototyping for manufacturing purposes. As technologies, printer cost, materials, and accessibility continue to improve, 3D printing has found widespread implementation in research and development in many disciplines due to ease-of-use and relatively fast design-to-object workflow. Several 3D printing techniques have been used to prepare devices such as milli- and microfluidic flow cells for analyses of cells and biomolecules as well as interfaces that enable bioanalytical measurements using cellphones. This review focuses on preparation and applications of 3D-printed bioanalytical devices.

  12. 3D-printed bioanalytical devices.

    PubMed

    Bishop, Gregory W; Satterwhite-Warden, Jennifer E; Kadimisetty, Karteek; Rusling, James F

    2016-07-15

    While 3D printing technologies first appeared in the 1980s, prohibitive costs, limited materials, and the relatively small number of commercially available printers confined applications mainly to prototyping for manufacturing purposes. As technologies, printer cost, materials, and accessibility continue to improve, 3D printing has found widespread implementation in research and development in many disciplines due to ease-of-use and relatively fast design-to-object workflow. Several 3D printing techniques have been used to prepare devices such as milli- and microfluidic flow cells for analyses of cells and biomolecules as well as interfaces that enable bioanalytical measurements using cellphones. This review focuses on preparation and applications of 3D-printed bioanalytical devices. PMID:27250897

  13. 3D Surgical Simulation

    PubMed Central

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  14. Fluid vs. kinetic magnetic reconnection with strong guide fields

    NASA Astrophysics Data System (ADS)

    Stanier, A.; Simakov, Andrei N.; Chacón, L.; Daughton, W.

    2015-10-01

    The fast rates of magnetic reconnection found in both nature and experiments are important to understand theoretically. Recently, it was demonstrated that two-fluid magnetic reconnection remains fast in the strong guide field regime, regardless of the presence of fast-dispersive waves. This conclusion is in agreement with recent results from kinetic simulations, and is in contradiction to the findings in an earlier two-fluid study, where it was suggested that fast-dispersive waves are necessary for fast reconnection. In this paper, we give a more detailed derivation of the analytic model presented in a recent letter and present additional simulation results to support the conclusions that the magnetic reconnection rate in this regime is independent of both collisional dissipation and system-size. In particular, we present a detailed comparison between fluid and kinetic simulations, finding good agreement in both the reconnection rate and overall length of the current layer. Finally, we revisit the earlier two-fluid study, which arrived at different conclusions, and suggest an alternative interpretation for the numerical results presented therein.

  15. Fluid vs. kinetic magnetic reconnection with strong guide fields

    SciTech Connect

    Stanier, A. Simakov, Andrei N.; Chacón, L.; Daughton, W.

    2015-10-15

    The fast rates of magnetic reconnection found in both nature and experiments are important to understand theoretically. Recently, it was demonstrated that two-fluid magnetic reconnection remains fast in the strong guide field regime, regardless of the presence of fast-dispersive waves. This conclusion is in agreement with recent results from kinetic simulations, and is in contradiction to the findings in an earlier two-fluid study, where it was suggested that fast-dispersive waves are necessary for fast reconnection. In this paper, we give a more detailed derivation of the analytic model presented in a recent letter and present additional simulation results to support the conclusions that the magnetic reconnection rate in this regime is independent of both collisional dissipation and system-size. In particular, we present a detailed comparison between fluid and kinetic simulations, finding good agreement in both the reconnection rate and overall length of the current layer. Finally, we revisit the earlier two-fluid study, which arrived at different conclusions, and suggest an alternative interpretation for the numerical results presented therein.

  16. Reconnection at Earth's Dayside Magnetopause

    NASA Astrophysics Data System (ADS)

    Cassak, P. A.; Fuselier, S. A.

    Magnetic reconnection at Earth's dayside magnetopause plays a crucial role in space weather-related phenomena. The response of the magnetosphere to input from interplanetary space differs greatly depending on where reconnection happens and how efficiently it reconnects magnetic flux from interplanetary space. This chapter is a pedagogical treatment of dayside reconnection. Introductory topics include a guide to the magnetosphere for the uninitiated and a brief history of the field. Technical topics include qualitative properties of dayside reconnection, such as where reconnection occurs and what it looks like, and how reconnection quantitatively depends on ambient conditions, including the effect of asymmetries, the diamagnetic drift, and flow shear. Both observational and theoretical aspects are discussed. The chapter is closed with a discussion of open questions and the outlook for the future of dayside reconnection research.

  17. MULTI-FLUID SIMULATIONS OF CHROMOSPHERIC MAGNETIC RECONNECTION IN A WEAKLY IONIZED REACTING PLASMA

    SciTech Connect

    Leake, James E.; Lukin, Vyacheslav S.; Linton, Mark G.; Meier, Eric T.

    2012-12-01

    We present results from the first self-consistent multi-fluid simulations of chromospheric magnetic reconnection in a weakly ionized reacting plasma. We simulate two-dimensional magnetic reconnection in a Harris current sheet with a numerical model which includes ion-neutral scattering collisions, ionization, recombination, optically thin radiative loss, collisional heating, and thermal conduction. In the resulting tearing mode reconnection the neutral and ion fluids become decoupled upstream from the reconnection site, creating an excess of ions in the reconnection region and therefore an ionization imbalance. Ion recombination in the reconnection region, combined with Alfvenic outflows, quickly removes ions from the reconnection site, leading to a fast reconnection rate independent of Lundquist number. In addition to allowing fast reconnection, we find that these non-equilibria partial ionization effects lead to the onset of the nonlinear secondary tearing instability at lower values of the Lundquist number than has been found in fully ionized plasmas. These simulations provide evidence that magnetic reconnection in the chromosphere could be responsible for jet-like transient phenomena such as spicules and chromospheric jets.

  18. 3D polarimetric purity

    NASA Astrophysics Data System (ADS)

    Gil, José J.; San José, Ignacio

    2010-11-01

    From our previous definition of the indices of polarimetric purity for 3D light beams [J.J. Gil, J.M. Correas, P.A. Melero and C. Ferreira, Monogr. Semin. Mat. G. de Galdeano 31, 161 (2004)], an analysis of their geometric and physical interpretation is presented. It is found that, in agreement with previous results, the first parameter is a measure of the degree of polarization, whereas the second parameter (called the degree of directionality) is a measure of the mean angular aperture of the direction of propagation of the corresponding light beam. This pair of invariant, non-dimensional, indices of polarimetric purity contains complete information about the polarimetric purity of a light beam. The overall degree of polarimetric purity is obtained as a weighted quadratic average of the degree of polarization and the degree of directionality.

  19. 3D field harmonics

    SciTech Connect

    Caspi, S.; Helm, M.; Laslett, L.J.

    1991-03-30

    We have developed an harmonic representation for the three dimensional field components within the windings of accelerator magnets. The form by which the field is presented is suitable for interfacing with other codes that make use of the 3D field components (particle tracking and stability). The field components can be calculated with high precision and reduced cup time at any location (r,{theta},z) inside the magnet bore. The same conductor geometry which is used to simulate line currents is also used in CAD with modifications more readily available. It is our hope that the format used here for magnetic fields can be used not only as a means of delivering fields but also as a way by which beam dynamics can suggest correction to the conductor geometry. 5 refs., 70 figs.

  20. 'Bonneville' in 3-D!

    NASA Technical Reports Server (NTRS)

    2004-01-01

    The Mars Exploration Rover Spirit took this 3-D navigation camera mosaic of the crater called 'Bonneville' after driving approximately 13 meters (42.7 feet) to get a better vantage point. Spirit's current position is close enough to the edge to see the interior of the crater, but high enough and far enough back to get a view of all of the walls. Because scientists and rover controllers are so pleased with this location, they will stay here for at least two more martian days, or sols, to take high resolution panoramic camera images of 'Bonneville' in its entirety. Just above the far crater rim, on the left side, is the rover's heatshield, which is visible as a tiny reflective speck.

  1. Three-Dimensional Turbulent Reconnection Induced by the Plasmoid Instability

    NASA Astrophysics Data System (ADS)

    Bhattacharjee, A.; Huang, Y. M.

    2014-12-01

    It has been established that the Sweet-Parker current layer in high-Lundquist-number reconnection is unstable to the super-Alfvenic plasmoid instability. Past two-dimensional magnetohydrodynamic simulations have demonstrated that the plasmoid instability leads to a new regime in which the Sweet-Parker current layer evolves into a chain of plasmoids connected by secondary current sheets and the averaged reconnection rate becomes nearly independent of the Lundquist number. In a three-dimensional configuration with a guide field, the additional degree of freedom allows plasmoid instabilities to grow at oblique angles [S. Baalrud et al. Phys. Plasmas 19, 022101 (2012)] and develop the complex dynamics of flux ropes which overlap, cause field-line stochasticization, and self-generate a turbulent state. Three-dimensional simulations in the high-Lundquist-number regime show the formation of cigar-shaped eddies elongated in the direction of the local magnetic field, which is a signature of anisotropic MHD turbulence. Furthermore, the energy fluctuation spectra are found to satisfy power laws in the inertial range. The averaged 3D reconnection rate in the self-generated turbulent state is of the order of a hundredth of the characteristic Alfven speed, which is an order of magnitude lower than the reconnection rate reported in recent studies of externally driven 3D turbulent reconnection. The physical reasons for these differences will be discussed.

  2. A new magnetic reconnection paradigm: Stochastic plasmoid chains

    NASA Astrophysics Data System (ADS)

    Loureiro, Nuno

    2015-11-01

    Recent analytical and numerical research in magnetic reconnection has converged on the notion that reconnection sites (current sheets) are unstable to the formation of multiple magnetic islands (plasmoids), provided that the system is sufficiently large (or, in other words, that the Lundquist number of the plasma is high). Nonlinearly, plasmoids come to define the reconnection geometry. Their nonlinear dynamics is rather complex and best thought of as new form of turbulence whose properties are determined by continuous plasmoid formation and their subsequent ejection from the sheet, as well as the interaction (coalescence) between plasmoids of different sizes. The existence of these stochastic plasmoid chains has powerful implications for several aspects of the reconnection process, from determining the reconnection rate to the details and efficiency of the energy conversion and dissipation. In addition, the plasmoid instability may also directly bear on the little understood problem of the reconnection trigger, or onset, i.e., the abrupt transition from a slow stage of energy accumulation to a fast (explosive) stage of energy release. This talk will first provide a brief overview of these recent developments in the reconnection field. I will then discuss recent work addressing the onset problem in the context of a forming current sheet which becomes progressively more unstable to the plasmoid instability. Work partially supported by Fundação para a Ciência e Tecnologia via Grants UID/FIS/50010/2013 and IF/00530/2013.

  3. Energetics of the magnetic reconnection in laboratory and space plasmas

    NASA Astrophysics Data System (ADS)

    Yamada, Masaaki

    2014-10-01

    The essential feature of magnetic reconnection is that it energizes plasma particles by converting magnetic energy to particle energy. This talk addresses this key unresolved question; how is magnetic energy converted to plasma kinetic energy during reconnection? Our recent study on MRX demonstrates that more than half of the incoming magnetic energy is converted to particle energy at a remarkably fast speed (~ 0.2VA) in the reconnection layer. A question arises as to whether the present results should be applied to magnetic reconnection phenomena in the space astrophysical plasmas. In a reconnection region of effectively similar size in the Earth's magnetotail, the energy partition was carefully measured during multiple passages of the Cluster satellites. The half length of the tail reconnection layer (L) was estimated to be 2000-4000 km namely 3-6 di, (ion skin depth); the scale length of this measurement is very similar to the MRX case, L ~ 3di. Reconnection in the magneto-tail is driven by an external force, i.e., the solar wind, and the boundary conditions are very similar to the MRX setup. The observed energy partition is notably similar, namely, more than 50% of the magnetic energy flux is converted to the particle energy flux, which is dominated by the ion enthalpy flux, with smaller contributions from the electron enthalpy and heat flux. A broad implication will be discussed. Supported by DoE, NASA, NSF.

  4. Gyrotropy During Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Swisdak, M.

    2015-12-01

    Gyrotropic particle distributions -- those that can be characterized completely by temperatures meausred parallel and perpendicular to the local magnetic field -- are the norm in many plasmas. However, near locations where magnetic topology suddenly changes, e.g., where magnetic reconnection occurs, gyrotropy can be expected to be violated. If these departures from gyrotropy are quantifiable they are useful as probes since magnetic topological changes are, in some sense, non-local while gyrotropy can be measured locally. I will discuss previously proposed measures of gyrotropy, give examples of cases where they give unphysical results, and propose a new measure. By applying this measure to particle-in-cell simulations of reconnection I will show that it does an excellent job of localizing reconnection sites. I will also show how gyrotropy can be quickly calculated in any case where the full pressure tensor is available. This has obvious applications to the interpretation of MMS data.

  5. Crustal thickness and Moho character of the fast-spreading East Pacific Rise from 9°42'N to 9°57'N from poststack-migrated 3-D MCS data

    NASA Astrophysics Data System (ADS)

    Aghaei, Omid; Nedimović, Mladen R.; Carton, Helene; Carbotte, Suzanne M.; Canales, J. Pablo; Mutter, John C.

    2014-03-01

    computed crustal thickness (5740 ± 270 m) and mapped Moho reflection character using 3-D seismic data covering 658 km2 of the fast-spreading East Pacific Rise (EPR) from 9°42'N to 9°57'N. Moho reflections are imaged within ˜87% of the study area. Average crustal thickness varies little between large sections of the study area suggesting regionally uniform crustal production in the last ˜180 Ka. However, individual crustal thickness measurements differ by as much as 1.75 km indicating that the mantle melt delivery has not been uniform. Third-order, but not fourth-order ridge discontinuities are associated with changes in the Moho reflection character and/or near-axis crustal thickness. This suggests that the third-order segmentation is governed by melt distribution processes within the uppermost mantle while the fourth-order ridge segmentation arises from midcrustal to upper-crustal processes. In this light, we assign fourth-order ridge discontinuity status to the debated ridge segment boundary at ˜9°45'N and third-order status at ˜9°51.5'N to the ridge segment boundary previously interpreted as a fourth-order discontinuity. Our seismic results also suggest that the mechanism of lower-crustal accretion varies along the investigated section of the EPR but that the volume of melt delivered to the crust is mostly uniform. More efficient mantle melt extraction is inferred within the southern half of our survey area with greater proportion of the lower crust accreted from the axial magma lens than that for the northern half. This south-to-north variation in the crustal accretion style may be caused by interaction between the melt sources for the ridge and the Lamont seamounts.

  6. Magnetic reconnection physics in the solar wind with Voyager 2

    NASA Astrophysics Data System (ADS)

    Stevens, Michael L.

    2009-08-01

    Magnetic reconnection is the process by which the magnetic topology evolves in collisionless plasmas. This phenomenon is fundamental to a broad range of astrophysical processes such as stellar flares, magnetospheric substorms, and plasma accretion, yet it is poorly understood and difficult to observe in situ . In this thesis, the solar wind plasma permeating interplanetary space is treated as a laboratory for reconnection physics. I present an exhaustive statistical approach to the identification of reconnection outflow jets in turbulent plasma and magnetic field time series data. This approach has been automated and characterized so that the resulting reconnection survey can be put in context with other related studies. The algorithm is shown to perform similarly to ad hoc studies in the inner heliosphere. Based on this technique, I present a survey of 138 outflow jets for the Voyager 2 spacecraft mission, including the most distant in situ evidence of reconnection discovered to date. Reconnection in the solar wind is shown to be strongly correlated with stream interactions and with solar activity. The solar wind magnetic field is found to be reconnecting via large, quasi-steady slow- mode magnetohydrodynamic structures as far out as the orbit of Neptune. The role of slow-mode shocks is explored and, in one instance, a well-developed reconnection structure is shown to be in good agreement with the Petschek theory for fast reconnection. This is the first reported example of a reconnection exhaust that satisfies the full jump conditions for a stationary slow-mode shock pair. A complete investigation into corotating stream interactions over the Voyager 2 mission has revealed that detectable reconnection structure occurs in about 23% of forced, global-scale current sheets. Contrary to previous studies, I find that signatures of this kind are most likely to be observed for current sheets where the magnetic field shear and the plasma-b are high. Evidence has been found

  7. Scalable Multi-Platform Distribution of Spatial 3d Contents

    NASA Astrophysics Data System (ADS)

    Klimke, J.; Hagedorn, B.; Döllner, J.

    2013-09-01

    Virtual 3D city models provide powerful user interfaces for communication of 2D and 3D geoinformation. Providing high quality visualization of massive 3D geoinformation in a scalable, fast, and cost efficient manner is still a challenging task. Especially for mobile and web-based system environments, software and hardware configurations of target systems differ significantly. This makes it hard to provide fast, visually appealing renderings of 3D data throughout a variety of platforms and devices. Current mobile or web-based solutions for 3D visualization usually require raw 3D scene data such as triangle meshes together with textures delivered from server to client, what makes them strongly limited in terms of size and complexity of the models they can handle. In this paper, we introduce a new approach for provisioning of massive, virtual 3D city models on different platforms namely web browsers, smartphones or tablets, by means of an interactive map assembled from artificial oblique image tiles. The key concept is to synthesize such images of a virtual 3D city model by a 3D rendering service in a preprocessing step. This service encapsulates model handling and 3D rendering techniques for high quality visualization of massive 3D models. By generating image tiles using this service, the 3D rendering process is shifted from the client side, which provides major advantages: (a) The complexity of the 3D city model data is decoupled from data transfer complexity (b) the implementation of client applications is simplified significantly as 3D rendering is encapsulated on server side (c) 3D city models can be easily deployed for and used by a large number of concurrent users, leading to a high degree of scalability of the overall approach. All core 3D rendering techniques are performed on a dedicated 3D rendering server, and thin-client applications can be compactly implemented for various devices and platforms.

  8. Global-scale hybrid simulation of dayside magnetic reconnection under southward IMF: Structure and evolution of reconnection

    NASA Astrophysics Data System (ADS)

    Tan, B.; Lin, Y.; Perez, J. D.; Wang, X. Y.

    2011-02-01

    Magnetopause reconnection is investigated with our 3-D self-consistent global hybrid simulation model. The magnetic configuration and evolution of Flux Transfer Events (FTEs) and the associated ion density and ion velocity distribution at various locations on the magnetopause are investigated. The results reveal the following. (1) Multiple X lines are formed during the magnetopause reconnection, which lead to both FTEs and quasi-steady-type reconnection under a steady solar wind condition. The resulting bipolar signature of local normal magnetic field of FTEs is consistent with satellite observations. (2) A greater-than-20% plasma temperature rise is seen at the center of a FTE, compared to that of the upstream plasma in the magnetosheath. The temperature enhancement is mainly in the direction parallel to the magnetic field because of the mixing of ion beams. (3) Flux ropes that lead to FTEs form between X lines of finite lengths and evolve relatively independently. The ion density is enhanced within FTE flux ropes because of the trapped particles, leading to a filamentary global density. (4) Different from the previous understanding based on the asymmetric density across the magnetopause, a quadrupole magnetic field signature associated with the Hall effects is found to be present around FTEs. (5) A combination of patchy reconnection and multiple X line reconnection leads to the formation of reconnected field lines from the magnetosphere to IMF, as well as the closed field lines from the magnetosphere to the magnetosphere in the magnetopause boundary layer.

  9. Prominent rocks - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Many prominent rocks near the Sagan Memorial Station are featured in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. Wedge is at lower left; Shark, Half-Dome, and Pumpkin are at center. Flat Top, about four inches high, is at lower right. The horizon in the distance is one to two kilometers away.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  10. 'Diamond' in 3-D

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This 3-D, microscopic imager mosaic of a target area on a rock called 'Diamond Jenness' was taken after NASA's Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time.

    Opportunity has bored nearly a dozen holes into the inner walls of 'Endurance Crater.' On sols 177 and 178 (July 23 and July 24, 2004), the rover worked double-duty on Diamond Jenness. Surface debris and the bumpy shape of the rock resulted in a shallow and irregular hole, only about 2 millimeters (0.08 inch) deep. The final depth was not enough to remove all the bumps and leave a neat hole with a smooth floor. This extremely shallow depression was then examined by the rover's alpha particle X-ray spectrometer.

    On Sol 178, Opportunity's 'robotic rodent' dined on Diamond Jenness once again, grinding almost an additional 5 millimeters (about 0.2 inch). The rover then applied its Moessbauer spectrometer to the deepened hole. This double dose of Diamond Jenness enabled the science team to examine the rock at varying layers. Results from those grindings are currently being analyzed.

    The image mosaic is about 6 centimeters (2.4 inches) across.

  11. Flare Particle Escape in 3D Solar Eruptive Events

    NASA Astrophysics Data System (ADS)

    Antiochos, Spiro K.; Masson, Sophie; DeVore, C. R.

    2015-04-01

    Among the most important, but least understood forms of space weather are the so-called Impulsive Solar Energetic Particle (SEP) events, which can be especially hazardous to deep-space astronauts. These energetic particles are generally believed to be produced by the flare reconnection that is the primary driver of solar eruptive events (SEE). A key point is that in the standard model of SEEs, the particles should remain trapped in the coronal flare loops and in the ejected plasmoid, the CME. However, flare-accelerated particles frequently reach the Earth long before the CME does. In previous 2.5D calculations we showed how the external reconnection that is an essential element of the breakout model for CME initiation could lead to the escape of flare-accelerated particles. The problem, however, is that in 2.5D this reconnection also tends to destroy the plasmoid, which disagrees with the observation that SEP events are often associated with well-defined plasmoids at 1 AU known as “magnetic clouds”. Consequently, we have extended our model to a fully 3D topology that includes a multi-polar coronal field suitable for a breakout SEE near a coronal hole region. We performed high-resolution 3D MHD numerical simulations with the Adaptively Refined MHD Solver (ARMS). Our results demonstrate that the model allows for the effective escape of energetic particles from deep within an ejecting well-defined plasmoid. We show how the complex interactions between the flare and breakout reconnection reproduce all the main observational features of SEEs and SEPs. We discuss the implications of our calculations for the upcoming Solar Orbiter and Solar Probe Plus missions, which will measure SEEs and SEPs near the Sun, thereby, mitigating propagation effects.This research was supported, in part, by the NASA SR&T and TR&T Programs.

  12. Turbulent General Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Eyink, G. L.

    2015-07-01

    Plasma flows with a magnetohydrodynamic (MHD)-like turbulent inertial range, such as the solar wind, require a generalization of general magnetic reconnection (GMR) theory. We introduce the slip velocity source vector per unit arclength of field line, the ratio of the curl of the non-ideal electric field in the generalized Ohm’s Law and magnetic field strength. It diverges at magnetic nulls, unifying GMR with null-point reconnection. Only under restrictive assumptions is the slip velocity related to the gradient of quasi-potential (which is the integral of parallel electric field along magnetic field lines). In a turbulent inertial range, the non-ideal field becomes tiny while its curl is large, so that line slippage occurs even while ideal MHD becomes accurate. The resolution is that ideal MHD is valid for a turbulent inertial range only in a weak sense that does not imply magnetic line freezing. The notion of weak solution is explained in terms of renormalization group (RG) type theory. The weak validity of the ideal Ohm’s law in the inertial range is shown via rigorous estimates of the terms in the generalized Ohm’s Law. All non-ideal terms are irrelevant in the RG sense and large-scale reconnection is thus governed solely by ideal dynamics. We discuss the implications for heliospheric reconnection, in particular for deviations from the Parker spiral model. Solar wind observations show that reconnection in a turbulence-broadened heliospheric current sheet, which is consistent with Lazarian-Vishniac theory, leads to slip velocities that cause field lines to lag relative to the spiral model.

  13. Impedance mammograph 3D phantom studies.

    PubMed

    Wtorek, J; Stelter, J; Nowakowski, A

    1999-04-20

    The results obtained using the Technical University of Gdansk Electroimpedance Mammograph (TUGEM) of a 3D phantom study are presented. The TUGEM system is briefly described. The hardware contains the measurement head and DSP-based identification modules controlled by a PC computer. A specially developed reconstruction algorithm, Regulated Correction Frequency Algebraic Reconstruction Technique (RCFART), is used to obtain 3D images. To visualize results, the Advance Visualization System (AVS) is used. It allows a powerful image processing on a fast workstation or on a high-performance computer. Results of three types of 3D conductivity perturbations used in the study (aluminum, Plexiglas, and cucumber) are shown. The relative volumes of perturbations less than 2% of the measurement chamber are easily evidenced. PMID:10372188

  14. 3D multiplexed immunoplasmonics microscopy

    NASA Astrophysics Data System (ADS)

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-01

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed

  15. 3D ultrafast laser scanner

    NASA Astrophysics Data System (ADS)

    Mahjoubfar, A.; Goda, K.; Wang, C.; Fard, A.; Adam, J.; Gossett, D. R.; Ayazi, A.; Sollier, E.; Malik, O.; Chen, E.; Liu, Y.; Brown, R.; Sarkhosh, N.; Di Carlo, D.; Jalali, B.

    2013-03-01

    Laser scanners are essential for scientific research, manufacturing, defense, and medical practice. Unfortunately, often times the speed of conventional laser scanners (e.g., galvanometric mirrors and acousto-optic deflectors) falls short for many applications, resulting in motion blur and failure to capture fast transient information. Here, we present a novel type of laser scanner that offers roughly three orders of magnitude higher scan rates than conventional methods. Our laser scanner, which we refer to as the hybrid dispersion laser scanner, performs inertia-free laser scanning by dispersing a train of broadband pulses both temporally and spatially. More specifically, each broadband pulse is temporally processed by time stretch dispersive Fourier transform and further dispersed into space by one or more diffractive elements such as prisms and gratings. As a proof-of-principle demonstration, we perform 1D line scans at a record high scan rate of 91 MHz and 2D raster scans and 3D volumetric scans at an unprecedented scan rate of 105 kHz. The method holds promise for a broad range of scientific, industrial, and biomedical applications. To show the utility of our method, we demonstrate imaging, nanometer-resolved surface vibrometry, and high-precision flow cytometry with real-time throughput that conventional laser scanners cannot offer due to their low scan rates.

  16. CLUSTERS OF SMALL ERUPTIVE FLARES PRODUCED BY MAGNETIC RECONNECTION IN THE SUN

    SciTech Connect

    Archontis, V.; Hansteen, V.

    2014-06-10

    We report on the formation of small solar flares produced by patchy magnetic reconnection between interacting magnetic loops. A three-dimensional (3D) magnetohydrodynamic (MHD) numerical experiment was performed, where a uniform magnetic flux sheet was injected into a fully developed convective layer. The gradual emergence of the field into the solar atmosphere results in a network of magnetic loops, which interact dynamically forming current layers at their interfaces. The formation and ejection of plasmoids out of the current layers leads to patchy reconnection and the spontaneous formation of several small (size ≈1-2 Mm) flares. We find that these flares are short-lived (30 s–3 minutes) bursts of energy in the range O(10{sup 25}-10{sup 27}) erg, which is basically the nanoflare-microflare range. Their persistent formation and co-operative action and evolution leads to recurrent emission of fast EUV/X-ray jets and considerable plasma heating in the active corona.

  17. High power heating of magnetic reconnection in merging tokamak experiments

    SciTech Connect

    Ono, Y.; Tanabe, H.; Gi, K.; Watanabe, T.; Ii, T.; Yamada, T.; Gryaznevich, M.; Scannell, R.; Conway, N.; Crowley, B.; Michael, C.

    2015-05-15

    Significant ion/electron heating of magnetic reconnection up to 1.2 keV was documented in two spherical tokamak plasma merging experiment on MAST with the significantly large Reynolds number R∼10{sup 5}. Measured 1D/2D contours of ion and electron temperatures reveal clearly energy-conversion mechanisms of magnetic reconnection: huge outflow heating of ions in the downstream and localized heating of electrons at the X-point. Ions are accelerated up to the order of poloidal Alfven speed in the reconnection outflow region and are thermalized by fast shock-like density pileups formed in the downstreams, in agreement with recent solar satellite observations and PIC simulation results. The magnetic reconnection efficiently converts the reconnecting (poloidal) magnetic energy mostly into ion thermal energy through the outflow, causing the reconnection heating energy proportional to square of the reconnecting (poloidal) magnetic field B{sub rec}{sup 2}  ∼  B{sub p}{sup 2}. The guide toroidal field B{sub t} does not affect the bulk heating of ions and electrons, probably because the reconnection/outflow speeds are determined mostly by the external driven inflow by the help of another fast reconnection mechanism: intermittent sheet ejection. The localized electron heating at the X-point increases sharply with the guide toroidal field B{sub t}, probably because the toroidal field increases electron confinement and acceleration length along the X-line. 2D measurements of magnetic field and temperatures in the TS-3 tokamak merging experiment also reveal the detailed reconnection heating mechanisms mentioned above. The high-power heating of tokamak merging is useful not only for laboratory study of reconnection but also for economical startup and heating of tokamak plasmas. The MAST/TS-3 tokamak merging with B{sub p} > 0.4 T will enables us to heat the plasma to the alpha heating regime: T{sub i} > 5 keV without using any additional heating facility.

  18. Inhomogeneous turbulence in magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Yokoi, Nobumitsu

    2016-07-01

    Turbulence is expected to play an essential role in enhancing magnetic reconnection. Turbulence associated with magnetic reconnection is highly inhomogeneous: it is generated by inhomogeneities of the field configuration such as the velocity shear, temperature gradient, density stratification, magnetic shear, etc. This self-generated turbulence affects the reconnection through the turbulent transport. In this reconnection--turbulence interaction, localization of turbulent transport due to dynamic balance between several turbulence effects plays an essential role. For investigating inhomogeneous turbulence in a strongly nonlinear regime, closure or turbulence modeling approaches provide a powerful tool. A turbulence modeling approach for the magnetic reconnection is introduced. In the model, the mean-field equations with turbulence effects incorporated are solved simultaneously with the equations of turbulent statistical quantities that represent spatiotemporal properties of turbulence under the effect of large-scale field inhomogeneities. Numerical simulations of this Reynolds-averaged turbulence model showed that self-generated turbulence enhances magnetic reconnection. It was pointed out that reconnection states may be divided into three category depending on the turbulence level: (i) laminar reconnection; (ii) turbulent reconnection, and (iii) turbulent diffusion. Recent developments in this direction are also briefly introduced, which includes the magnetic Prandtl number dependence, spectral evolution, and guide-field effects. Also relationship of this fully nonlinear turbulence approach with other important approaches such as plasmoid instability reconnection will be discussed.

  19. Kinetic simulations of secondary reconnection in the reconnection jet

    NASA Astrophysics Data System (ADS)

    Huang, S. Y.; Zhou, M.; Yuan, Z. G.; Fu, H. S.; He, J. S.; Sahraoui, F.; Aunai, N.; Deng, X. H.; Fu, S.; Pang, Y.; Wang, D. D.

    2015-08-01

    Magnetic reconnection, as one important energy dissipation process in plasmas, has been extensively studied in the past several decades. Magnetic reconnection occurring in the downstream of a primary X line is referred to as secondary reconnection. In this paper, we used kinetic simulations to investigate the secondary reconnection in detail. We found that secondary reconnection is reversed by the compression caused by the outflowing jet originating from the primary reconnection site, which results in the erosion of the magnetic island between the two X lines within ~3 ωci-1. We show the observational signatures expected in electromagnetic fields and plasma measurements in the Earth's magnetotail, associated with this mechanism. These simulation results could be applied to interpret the signatures associated with the evolution of earthward magnetic islands in the Earth's magnetotail.

  20. Visual inertia of rotating 3-D objects.

    PubMed

    Jiang, Y; Pantle, A J; Mark, L S

    1998-02-01

    Five experiments were designed to determine whether a rotating, transparent 3-D cloud of dots (simulated sphere) could influence the perceived direction of rotation of a subsequent sphere. Experiment 1 established conditions under which the direction of rotation of a virtual sphere was perceived unambiguously. When a near-far luminance difference and perspective depth cues were present, observers consistently saw the sphere rotate in the intended direction. In Experiment 2, a near-far luminance difference was used to create an unambiguous rotation sequence that was followed by a directionally ambiguous rotation sequence that lacked both the near-far luminance cue and the perspective cue. Observers consistently saw the second sequence as rotating in the same direction as the first, indicating the presence of 3-D visual inertia. Experiment 3 showed that 3-D visual inertia was sufficiently powerful to bias the perceived direction of a rotation sequence made unambiguous by a near-far luminance cue. Experiment 5 showed that 3-D visual inertia could be obtained using an occlusion depth cue to create an unambiguous inertia-inducing sequence. Finally, Experiments 2, 4, and 5 all revealed a fast-decay phase of inertia that lasted for approximately 800 msec, followed by an asymptotic phase that lasted for periods as long as 1,600 msec. The implications of these findings are examined with respect to motion mechanisms of 3-D visual inertia. PMID:9529911

  1. The Magnetospheric Multiscale Mission: New Data on Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Burch, James

    2015-11-01

    The Magnetospheric Multiscale (MMS) mission was launched on March 12, 2015 into its Phase 1 elliptical orbit with apogee at 12 Earth radii (RE) . The baseline science goal for MMS is to Understand the microphysics of magnetic reconnection by determining the kinetic processes occurring in the electron diffusion region that are responsible for collisionless magnetic reconnection, especially how reconnection is initiated.In priority order, MMS will address three specific objectives: (1) Determine the role played by electron inertial effects and turbulent dissipation in driving magnetic reconnection in the electron diffusion region; (2) Determine the rate of magnetic reconnection and the parameters that control it. (3) Determine the role played by ion inertial effects in the physics of magnetic reconnection. During the six months of commissioning following launch, all of the instruments on the four spacecraft were made fully operational. Beginning on September 1, 2015 the spacecraft began their first scan of the dayside magnetopause in a tetrahedral formation with separations of 160 km. During Phase 1 the separation will be reduced in steps to 10 km and then adjusted to the separation that is judged to be optimum for reconnection studies. A second scan of the dayside magnetopause will be conducted at this optimum separation. Then apogee will be raised to 25 RE for a scan of the magnetotail with separations variable from 30 km to 400 km. Throughout the mission the payload will be operated at its maximum data rate, which is sufficient to investigate reconnection down to approximately the electron diffusion length scale with full 3D plasma electron distributions obtained in 30 ms, ion distributions at 150 ms, and magnetic and electric fields at 1 ms resolution. 3D plasma and energetic ion composition an energetic electron measurements along with plasma waves will also be made. The spacecraft potential is maintained below +4V by an ion emitter. Because of the large amount

  2. Multi-scale structures of turbulent magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Nakamura, T. K. M.; Nakamura, R.; Narita, Y.; Baumjohann, W.; Daughton, W.

    2016-05-01

    We have analyzed data from a series of 3D fully kinetic simulations of turbulent magnetic reconnection with a guide field. A new concept of the guide filed reconnection process has recently been proposed, in which the secondary tearing instability and the resulting formation of oblique, small scale flux ropes largely disturb the structure of the primary reconnection layer and lead to 3D turbulent features [W. Daughton et al., Nat. Phys. 7, 539 (2011)]. In this paper, we further investigate the multi-scale physics in this turbulent, guide field reconnection process by introducing a wave number band-pass filter (k-BPF) technique in which modes for the small scale (less than ion scale) fluctuations and the background large scale (more than ion scale) variations are separately reconstructed from the wave number domain to the spatial domain in the inverse Fourier transform process. Combining with the Fourier based analyses in the wave number domain, we successfully identify spatial and temporal development of the multi-scale structures in the turbulent reconnection process. When considering a strong guide field, the small scale tearing mode and the resulting flux ropes develop over a specific range of oblique angles mainly along the edge of the primary ion scale flux ropes and reconnection separatrix. The rapid merging of these small scale modes leads to a smooth energy spectrum connecting ion and electron scales. When the guide field is sufficiently weak, the background current sheet is strongly kinked and oblique angles for the small scale modes are widely scattered at the kinked regions. Similar approaches handling both the wave number and spatial domains will be applicable to the data from multipoint, high-resolution spacecraft observations such as the NASA magnetospheric multiscale (MMS) mission.

  3. Magnetic reconnection, buoyancy, and flapping motions in magnetotail explosions

    NASA Astrophysics Data System (ADS)

    Sitnov, M. I.; Merkin, V. G.; Swisdak, M.; Motoba, T.; Buzulukova, N.; Moore, T. E.; Mauk, B. H.; Ohtani, S.

    2014-09-01

    A key process in the interaction of magnetospheres with the solar wind is the explosive release of energy stored in the magnetotail. Based on observational evidence, magnetic reconnection is widely believed to be responsible. However, the very possibility of spontaneous reconnection in collisionless magnetotail plasmas has been questioned in kinetic theory for more than three decades. In addition, in situ observations by multispacecraft missions (e.g., THEMIS) reveal the development of buoyancy and flapping motions coexisting with reconnection. Never before have kinetic simulations reproduced all three primary modes in realistic 2-D configurations with a finite normal magnetic field. Moreover, 3-D simulations with closed boundaries suggest that the tail activity is dominated by buoyancy-driven instabilities, whereas reconnection is a secondary effect strongly localized in the dawn-dusk direction. In this paper, we use massively parallel 3-D fully kinetic simulations with open boundaries to show that sufficiently far from the planet explosive processes in the tail are dominated by reconnection motions. These motions occur in the form of spontaneously generated dipolarization fronts accompanied by changes in magnetic topology which extend in the dawn-dusk direction over the size of the simulation box, suggesting that reconnection onset causes a macroscale reconfiguration of the real magnetotail. In our simulations, buoyancy and flapping motions significantly disturb the primary dipolarization front but neither destroy it nor change the near 2-D picture of the front evolution critically. Consistent with recent multiprobe observations, dipolarization fronts are also found to be the main regions of energy conversion in the magnetotail.

  4. 3D multiplexed immunoplasmonics microscopy.

    PubMed

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-21

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K(+) channel subunit KV1.1) on human cancer CD44(+) EGFR(+) KV1.1(+) MDA-MB-231 cells and reference CD44(-) EGFR(-) KV1.1(+) 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third

  5. AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures

    PubMed Central

    Zambrano, Rafael; Jamroz, Michal; Szczasiuk, Agata; Pujols, Jordi; Kmiecik, Sebastian; Ventura, Salvador

    2015-01-01

    Protein aggregation underlies an increasing number of disorders and constitutes a major bottleneck in the development of therapeutic proteins. Our present understanding on the molecular determinants of protein aggregation has crystalized in a series of predictive algorithms to identify aggregation-prone sites. A majority of these methods rely only on sequence. Therefore, they find difficulties to predict the aggregation properties of folded globular proteins, where aggregation-prone sites are often not contiguous in sequence or buried inside the native structure. The AGGRESCAN3D (A3D) server overcomes these limitations by taking into account the protein structure and the experimental aggregation propensity scale from the well-established AGGRESCAN method. Using the A3D server, the identified aggregation-prone residues can be virtually mutated to design variants with increased solubility, or to test the impact of pathogenic mutations. Additionally, A3D server enables to take into account the dynamic fluctuations of protein structure in solution, which may influence aggregation propensity. This is possible in A3D Dynamic Mode that exploits the CABS-flex approach for the fast simulations of flexibility of globular proteins. The A3D server can be accessed at http://biocomp.chem.uw.edu.pl/A3D/. PMID:25883144

  6. Automatic needle segmentation in 3D ultrasound images using 3D improved Hough transform

    NASA Astrophysics Data System (ADS)

    Zhou, Hua; Qiu, Wu; Ding, Mingyue; Zhang, Songgen

    2008-03-01

    3D ultrasound (US) is a new technology that can be used for a variety of diagnostic applications, such as obstetrical, vascular, and urological imaging, and has been explored greatly potential in the applications of image-guided surgery and therapy. Uterine adenoma and uterine bleeding are the two most prevalent diseases in Chinese woman, and a minimally invasive ablation system using a needle-like RF button electrode is widely used to destroy tumor cells or stop bleeding. To avoid accidents or death of the patient by inaccurate localizations of the electrode and the tumor position during treatment, 3D US guidance system was developed. In this paper, a new automated technique, the 3D Improved Hough Transform (3DIHT) algorithm, which is potentially fast, accurate, and robust to provide needle segmentation in 3D US image for use of 3D US imaging guidance, was presented. Based on the coarse-fine search strategy and a four parameter representation of lines in 3D space, 3DIHT algorithm can segment needles quickly, accurately and robustly. The technique was evaluated using the 3D US images acquired by scanning a water phantom. The segmentation position deviation of the line was less than 2mm and angular deviation was much less than 2°. The average computational time measured on a Pentium IV 2.80GHz PC computer with a 381×381×250 image was less than 2s.

  7. Supernova Remnant in 3-D

    NASA Technical Reports Server (NTRS)

    2009-01-01

    wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.

    The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.

    This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.

    High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these

  8. Final Report: Laboratory Studies of Spontaneous Reconnection and Intermittent Plasma Objects

    SciTech Connect

    Egedal-Pedersen, Jan; Porkolab, Miklos

    2011-05-31

    The study of the collisionless magnetic reconnection constituted the primary work carried out under this grant. The investigations utilized two magnetic configurations with distinct boundary conditions. Both configurations were based upon the Versatile Toroidal Facility (VTF) at the MIT Plasma Science and Fusion Center and the MIT Physics Department. The NSF/DOE award No. 0613734, supported two graduate students (now Drs. W. Fox and N. Katz) and material expenses. The grant enabled these students to operate the VTF basic plasma physics experiment on magnetic reconnection. The first configuration was characterized by open boundary conditions where the magnetic field lines interface directly with the vacuum vessel walls. The reconnection dynamics for this configuration has been methodically characterized and it has been shown that kinetic effects related to trapped electron trajectories are responsible for the high rates of reconnection observed. This type of reconnection has not been investigated before. Nevertheless, the results are directly relevant to observations by the Wind spacecraft of fast reconnection deep in the Earth magnetotail. The second configuration was developed to be relevant to specifically to numerical simulations of magnetic reconnection, allowing the magnetic field-lines to be contained inside the device. The configuration is compatible with the presence of large current sheets in the reconnection region and reconnection is observed in fast powerful bursts. These reconnection events facilitate the first experimental investigations of the physics governing the spontaneous onset of fast reconnection. In the Report we review the general motivation of this work and provide an overview of our experimental and theoretical results enabled by the support through the awards.

  9. Critical Differences of Asymmetric Magnetic Reconnection from Standard Models

    NASA Astrophysics Data System (ADS)

    Nitta, S.; Wada, T.; Fuchida, T.; Kondoh, K.

    2016-09-01

    We have clarified the structure of asymmetric magnetic reconnection in detail as the result of the spontaneous evolutionary process. The asymmetry is imposed as ratio k of the magnetic field strength in both sides of the initial current sheet (CS) in the isothermal equilibrium. The MHD simulation is carried out by the HLLD code for the long-term temporal evolution with very high spatial resolution. The resultant structure is drastically different from the symmetric case (e.g., the Petschek model) even for slight asymmetry k = 2. (1) The velocity distribution in the reconnection jet clearly shows a two-layered structure, i.e., the high-speed sub-layer in which the flow is almost field aligned and the acceleration sub-layer. (2) Higher beta side (HBS) plasma is caught in a lower beta side plasmoid. This suggests a new plasma mixing process in the reconnection events. (3) A new large strong fast shock in front of the plasmoid forms in the HBS. This can be a new particle acceleration site in the reconnection system. These critical properties that have not been reported in previous works suggest that we contribute to a better and more detailed knowledge of the reconnection of the standard model for the symmetric magnetic reconnection system.

  10. 3D Spectroscopy in Astronomy

    NASA Astrophysics Data System (ADS)

    Mediavilla, Evencio; Arribas, Santiago; Roth, Martin; Cepa-Nogué, Jordi; Sánchez, Francisco

    2011-09-01

    Preface; Acknowledgements; 1. Introductory review and technical approaches Martin M. Roth; 2. Observational procedures and data reduction James E. H. Turner; 3. 3D Spectroscopy instrumentation M. A. Bershady; 4. Analysis of 3D data Pierre Ferruit; 5. Science motivation for IFS and galactic studies F. Eisenhauer; 6. Extragalactic studies and future IFS science Luis Colina; 7. Tutorials: how to handle 3D spectroscopy data Sebastian F. Sánchez, Begona García-Lorenzo and Arlette Pécontal-Rousset.

  11. Interchange Slip-Running Reconnection and Sweeping SEP-Beams

    NASA Technical Reports Server (NTRS)

    Masson, S.; Aulanier, G.; Pariat, E.; Klein, K.-L.

    2011-01-01

    We present a new model to explain how particles, accelerated at a reconnection site that is not magnetically connected to the Earth, could eventually propagate along the well-connected open flux tube. Our model is based on the results of a low-beta resistive magnetohydrodynamics simulation of a three-dimensional line-tied and initially current-free bipole, that is embedded in a non-uniform open potential field. The topology of this configuration is that of an asymmetric coronal null-point, with a closed fan surface and an open outer spine. When driven by slow photospheric shearing motions, field lines, initially fully anchored below the fan dome, reconnect at the null point, and jump to the open magnetic domain. This is the standard interchange mode as sketched and calculated in 2D. The key result in 3D is that, reconnected open field lines located in the vicinity of the outer spine, keep reconnecting continuously, across an open quasi-separatrix layer, as previously identified for non-open-null-point reconnection. The apparent slipping motion of these field lines leads to form an extended narrow magnetic flux tube at high altitude. Because of the slip-running reconnection, we conjecture that if energetic particles would be travelling through, or be accelerated inside, the diffusion region, they would be successively injected along continuously reconnecting field lines that are connected farther and farther from the spine. At the scale of the full Sun, owing to the super-radial expansion of field lines below 3 solar radius, such energetic particles could easily be injected in field lines slipping over significant distances, and could eventually reach the distant flux tube that is well-connected to the Earth.

  12. 3D Elevation Program—Virtual USA in 3D

    USGS Publications Warehouse

    Lukas, Vicki; Stoker, J.M.

    2016-01-01

    The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.  

  13. Explosive reconnection in magnetars

    NASA Astrophysics Data System (ADS)

    Lyutikov, Maxim

    2003-12-01

    The X-ray activity of anomalous X-ray pulsars and soft γ-ray repeaters may result from the heating of their magnetic corona by direct currents dissipated by magnetic reconnection. We investigate the possibility that X-ray flares and bursts observed from anomalous X-ray pulsars and soft γ-ray repeaters result from magnetospheric reconnection events initiated by development of the tearing mode in magnetically dominated relativistic plasma. We formulate equations of resistive force-free electrodynamics, discuss the relation of the latter to ideal electrodynamics, and give examples of both ideal and resistive equilibria. Resistive force-free current layers are unstable towards the development of small-scale current sheets where resistive effects become important. Thin current sheets are found to be unstable due to the development of the resistive force-free tearing mode. The growth rate of the tearing mode is intermediate between the short Alfvén time-scale τA and a long resistive time-scale τR: Γ~ 1/(τRτA)1/2, similar to the case of non-relativistic non-force-free plasma. We propose that growth of the tearing mode is related to the typical rise time of flares, ~10 ms. Finally, we discuss how reconnection may explain other magnetar phenomena and ways to test the model.

  14. Acceleration during magnetic reconnection

    SciTech Connect

    Beresnyak, Andrey; Li, Hui

    2015-07-16

    The presentation begins with colorful depictions of solar x-ray flares and references to pulsar phenomena. Plasma reconnection is complex, could be x-point dominated or turbulent, field lines could break due to either resistivity or non-ideal effects, such as electron pressure anisotropy. Electron acceleration is sometimes observed, and sometimes not. One way to study this complex problem is to have many examples of the process (reconnection) and compare them; the other way is to simplify and come to something robust. Ideal MHD (E=0) turbulence driven by magnetic energy is assumed, and the first-order acceleration is sought. It is found that dissipation in big (length >100 ion skin depths) current sheets is universal and independent on microscopic resistivity and the mean imposed field; particles are regularly accelerated while experiencing curvature drift in flows driven by magnetic tension. One example of such flow is spontaneous reconnection. This explains hot electrons with a power-law tail in solar flares, as well as ultrashort time variability in some astrophysical sources.

  15. Reconnection Between Twisted Flux Tubes - Implications for Coronal Heating

    NASA Astrophysics Data System (ADS)

    Knizhnik, K. J.; Antiochos, S. K.; DeVore, C. R.; Klimchuk, J. A.; Wyper, P. F.

    2015-12-01

    The nature of the heating of the Sun's corona has been a long-standing unanswered problem in solar physics. Beginning with the work of Parker (1972), many authors have argued that the corona is continuously heated through numerous small-scale reconnection events known as nanoflares. In these nanoflare models, stressing of magnetic flux tubes by photospheric motions causes the field to become misaligned, producing current sheets in the corona. These current sheets then reconnect, converting the free energy stored in the magnetic field into heat. In this work, we use the Adaptively Refined MHD Solver (ARMS) to perform 3D MHD simulations that dynamically resolve regions of strong current to study the reconnection between twisted flux tubes in a plane-parallel Parker configuration. We investigate the energetics of the process, and show that the flux tubes accumulate stress gradually before undergoing impulsive reconnection. We study the motion of the individual field lines during reconnection, and demonstrate that the connectivity of the configuration becomes extremely complex, with multiple current sheets being formed, which could lead to enhanced heating. In addition, we show that there is considerable interaction between the twisted flux tubes and the surrounding untwisted field, which contributes further to the formation of current sheets. The implications for observations will be discussed. This work was funded by a NASA Earth and Space Science Fellowship, and by the NASA TR&T Program.

  16. Experimental Demonstration of the Collisionless Plasmoid Instability below the Ion Kinetic Scale during Magnetic Reconnection.

    PubMed

    Olson, J; Egedal, J; Greess, S; Myers, R; Clark, M; Endrizzi, D; Flanagan, K; Milhone, J; Peterson, E; Wallace, J; Weisberg, D; Forest, C B

    2016-06-24

    The spontaneous formation of magnetic islands is observed in driven, antiparallel magnetic reconnection on the Terrestrial Reconnection Experiment. We here provide direct experimental evidence that the plasmoid instability is active at the electron scale inside the ion diffusion region in a low collisional regime. The experiments show the island formation occurs at a smaller system size than predicted by extended magnetohydrodynamics or fully collisionless simulations. This more effective seeding of magnetic islands emphasizes their importance to reconnection in naturally occurring 3D plasmas. PMID:27391729

  17. The onset of magnetic reconnection in three dimensions

    SciTech Connect

    Pritchett, P. L.

    2013-08-15

    The onset of collisionless magnetic reconnection in current sheets containing a localized enhancement of the initial normal magnetic field component is examined using 2D and 3D particle-in-cell simulations that treat a closed system. In the 2D case, the current sheet is found to remain stable for at least several hundred inverse ion cyclotron times. In 3D, however, the system is found to be unstable to a ballooning/interchange type of mode with wavenumber k{sub y}ρ{sub in}∼1 (where ρ{sub in} is the ion gyroradius in the normal field B{sub z}). These modes evolve to form intense “heads” of strongly enhanced B{sub z}; in the wake of the heads are regions of strongly reduced or reversed B{sub z}. These local field reversals lead to the onset of reconnection with reconnection electric fields several times more intense than typical values seen for 2D reconnection.

  18. Reconnection of colliding vortex rings.

    PubMed

    Chatelain, Philippe; Kivotides, Demosthenes; Leonard, Anthony

    2003-02-01

    We investigate numerically the Navier-Stokes dynamics of reconnecting vortex rings at small Reynolds number for a variety of configurations. We find that reconnections are dissipative due to the smoothing of vorticity gradients at reconnection kinks and to the formation of secondary structures of stretched antiparallel vorticity which transfer kinetic energy to small scales where it is subsequently dissipated efficiently. In addition, the relaxation of the reconnection kinks excites Kelvin waves which due to strong damping are of low wave number and affect directly only large scale properties of the flow. PMID:12633362

  19. 3D multiplexed immunoplasmonics microscopy

    NASA Astrophysics Data System (ADS)

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-01

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed

  20. Cryogenic 3-D Detectors for Solar Physics

    NASA Astrophysics Data System (ADS)

    Stern, R. A.; Martinez-Galarce, D.; Rausch, A.; Shing, L.; Deiker, S.; Boerner, P.; Metcalf, T.; Cabrera, B.; Leman, S. W.; Brink, P.; Irwin, K.; Alexander, D.

    2005-05-01

    Cryogenic microcalorimeters operating in the sub-Kelvin temperature range provide non-dispersive energy resolution at optical through gamma ray energies (e.g, E/Δ E ~ 1500 at 6 keV). Microcalorimeters also have high time resolution (msec or better), and can be made into imaging arrays through SQUID multiplexing of individual pixels or employing position sensitive detector structures. The application of such "3-D" detector technology to solar physics will lead to significant advances in our understanding of magnetic reconnection in the Sun, including X-ray jet phenomena, and active region heating and dynamics. An Explorer-class solar mission within the next 5-10 years, based upon these detectors, is rapidly becoming technically feasible. LMSAL currently has an internally funded laboratory research program to investigate TES (Transition Edge Sensor) microcalorimeters; we recently saw our first X-ray photons using TES detectors supplied by NIST. In addition, we have recently been funded by NASA to begin work with NIST on position-sensitive X-ray strip detectors for solar physics applications. Finally, we are collaborating with with Stanford and NIST on a solar sounding rocket. In this presentation, we will discuss the current status of these programs and their applicability to future Explorer missions and Roadmap missions such as RAM.

  1. Supernova Remnant in 3-D

    NASA Technical Reports Server (NTRS)

    2009-01-01

    wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.

    The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.

    This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.

    High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these

  2. Experimental Study of Current-Driven Turbulence During Magnetic Reconnection

    SciTech Connect

    Porkolab, Miklos; Egedal-Pedersen, Jan; Fox, William

    2010-08-31

    nonlinear solitary wave known to evolve from a strong beam-on-tail instability. We established that fast electrons were produced by magnetic reconnection. Overall, these instabilities were found to be a consequence of reconnection, specifically the strong energization of electrons, leading to steep gradients in both coordinate- and velocity-space. Estimates (using quasi-linear theory) of the anomalous resistivity due to these modes did not appear large enough to substantially impact the reconnection process. Relevant publications: W. Fox, M. Porkolab, et al, Phys. Rev. Lett. 101, 255003 (2008). W. Fox, M. Porkolab, et al, Phys. Plasmas 17, 072303, (2010).

  3. Modular 3-D Transport model

    EPA Science Inventory

    MT3D was first developed by Chunmiao Zheng in 1990 at S.S. Papadopulos & Associates, Inc. with partial support from the U.S. Environmental Protection Agency (USEPA). Starting in 1990, MT3D was released as a pubic domain code from the USEPA. Commercial versions with enhanced capab...

  4. Market study: 3-D eyetracker

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.

  5. [3-D ultrasound in gastroenterology].

    PubMed

    Zoller, W G; Liess, H

    1994-06-01

    Three-dimensional (3D) sonography represents a development of noninvasive diagnostic imaging by real-time two-dimensional (2D) sonography. The use of transparent rotating scans, comparable to a block of glass, generates a 3D effect. The objective of the present study was to optimate 3D presentation of abdominal findings. Additional investigations were made with a new volumetric program to determine the volume of selected findings of the liver. The results were compared with the estimated volumes of 2D sonography and 2D computer tomography (CT). For the processing of 3D images, typical parameter constellations were found for the different findings, which facilitated processing of 3D images. In more than 75% of the cases examined we found an optimal 3D presentation of sonographic findings with respect to the evaluation criteria developed by us for the 3D imaging of processed data. Great differences were found for the estimated volumes of the findings of the liver concerning the three different techniques applied. 3D ultrasound represents a valuable method to judge morphological appearance in abdominal findings. The possibility of volumetric measurements enlarges its potential diagnostic significance. Further clinical investigations are necessary to find out if definite differentiation between benign and malign findings is possible. PMID:7919882

  6. 3D World Building System

    SciTech Connect

    2013-10-30

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  7. 3D World Building System

    ScienceCinema

    None

    2014-02-26

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  8. Detection of small-scale folds at a solar wind reconnection exhaust

    NASA Astrophysics Data System (ADS)

    Mistry, R.; Eastwood, J. P.; Hietala, H.

    2015-01-01

    of reconnection in the solar wind over the last few years appear to indicate that the majority of large-scale reconnecting current sheets are roughly planar, and that reconnection itself is quasi-steady. Most studies of solar wind exhausts have used spacecraft with large separations and relatively low time cadence ion measurements. Here we present multipoint Cluster observations of a reconnection exhaust and the associated current sheet at ACE and Wind, enabling it to be studied on multiple length scales and at high time resolution. While analysis shows that on large scales the current sheet is planar, detailed measurements using the four closely spaced Cluster spacecraft show that the trailing edge of the reconnection jet is nonplanar with folds orthogonal to the reconnection plane, with length scales of approximately 230 ion inertial lengths. Our findings thus suggest that while solar wind current sheets undergoing reconnection may be planar on large scales, they may also exhibit complex smaller-scale structure. Such structure is difficult to observe and has rarely been detected because exhausts are rapidly convected past the spacecraft in a single cut; there is therefore a limited set of spacecraft trajectories through the exhaust which would allow the nonplanar features to be intercepted. We consider how such nonplanar reconnection current sheets can form and the processes which may have generated the 3-D structure that was observed.

  9. Euro3D Science Conference

    NASA Astrophysics Data System (ADS)

    Walsh, J. R.

    2004-02-01

    The Euro3D RTN is an EU funded Research Training Network to foster the exploitation of 3D spectroscopy in Europe. 3D spectroscopy is a general term for spectroscopy of an area of the sky and derives its name from its two spatial + one spectral dimensions. There are an increasing number of instruments which use integral field devices to achieve spectroscopy of an area of the sky, either using lens arrays, optical fibres or image slicers, to pack spectra of multiple pixels on the sky (``spaxels'') onto a 2D detector. On account of the large volume of data and the special methods required to reduce and analyse 3D data, there are only a few centres of expertise and these are mostly involved with instrument developments. There is a perceived lack of expertise in 3D spectroscopy spread though the astronomical community and its use in the armoury of the observational astronomer is viewed as being highly specialised. For precisely this reason the Euro3D RTN was proposed to train young researchers in this area and develop user tools to widen the experience with this particular type of data in Europe. The Euro3D RTN is coordinated by Martin M. Roth (Astrophysikalisches Institut Potsdam) and has been running since July 2002. The first Euro3D science conference was held in Cambridge, UK from 22 to 23 May 2003. The main emphasis of the conference was, in keeping with the RTN, to expose the work of the young post-docs who are funded by the RTN. In addition the team members from the eleven European institutes involved in Euro3D also presented instrumental and observational developments. The conference was organized by Andy Bunker and held at the Institute of Astronomy. There were over thirty participants and 26 talks covered the whole range of application of 3D techniques. The science ranged from Galactic planetary nebulae and globular clusters to kinematics of nearby galaxies out to objects at high redshift. Several talks were devoted to reporting recent observations with newly

  10. PLOT3D user's manual

    NASA Technical Reports Server (NTRS)

    Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.

    1990-01-01

    PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.

  11. 3D printing in dentistry.

    PubMed

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery. PMID:26657435

  12. Radiative Magnetic Reconnection in Astrophysics

    NASA Astrophysics Data System (ADS)

    Uzdensky, D. A.

    In this chapter we review a new and rapidly growing area of research in high-energy plasma astrophysics—radiative magnetic reconnection, defined here as a regime of reconnection where radiation reaction has an important influence on the reconnection dynamics, energetics, and/or nonthermal particle acceleration. This influence be may be manifested via a variety of radiative effects that are critical in many high-energy astrophysical applications. The most notable radiative effects in astrophysical reconnection include radiation-reaction limits on particle acceleration, radiative cooling, radiative resistivity, braking of reconnection outflows by radiation drag, radiation pressure, viscosity, and even pair creation at highest energy densities. The self-consistent inclusion of these effects into magnetic reconnection theory and modeling sometimes calls for serious modifications to our overall theoretical approach to the problem. In addition, prompt reconnection-powered radiation often represents our only observational diagnostic tool available for studying remote astrophysical systems; this underscores the importance of developing predictive modeling capabilities to connect the underlying physical conditions in a reconnecting system to observable radiative signatures. This chapter presents an overview of our recent theoretical progress in developing basic physical understanding of radiative magnetic reconnection, with a special emphasis on astrophysically most important radiation mechanisms like synchrotron, curvature, and inverse-Compton. The chapter also offers a broad review of key high-energy astrophysical applications of radiative reconnection, illustrated by multiple examples such as: pulsar wind nebulae, pulsar magnetospheres, black-hole accretion-disk coronae and hot accretion flows in X-ray Binaries and Active Galactic Nuclei and their relativistic jets, magnetospheres of magnetars, and Gamma-Ray Bursts. Finally, this chapter discusses the most critical

  13. Laboratory Experiment of Magnetic Reconnection between Merging Flux Tubes with Strong Guide FIeld

    NASA Astrophysics Data System (ADS)

    Inomoto, M.; Kamio, S.; Kuwahata, A.; Ono, Y.

    2013-12-01

    monochromatic magnetic fluctuations. In conclusion, the laboratory guide field reconnection experiments showed some unique features such as ejection of current sheet, localized enhancement of emission, and excitation of low frequency waves, suggesting intermittent fast reconnection mechanism with significant electron acceleration. [1] N. Nishizuka et al., Astrophysical J. 711, 1062 (2010). [2] Y. Ono et al., Phys. Plasmas 18, 111213 (2011). [3] M. Inomoto et al., Plasma and Fusion Res. 8, 2401112 (2013). [4] M. Inomoto et al., Phys. Plasmas 20, 061209 (2013).

  14. An efficient and robust 3D mesh compression based on 3D watermarking and wavelet transform

    NASA Astrophysics Data System (ADS)

    Zagrouba, Ezzeddine; Ben Jabra, Saoussen; Didi, Yosra

    2011-06-01

    The compression and watermarking of 3D meshes are very important in many areas of activity including digital cinematography, virtual reality as well as CAD design. However, most studies on 3D watermarking and 3D compression are done independently. To verify a good trade-off between protection and a fast transfer of 3D meshes, this paper proposes a new approach which combines 3D mesh compression with mesh watermarking. This combination is based on a wavelet transformation. In fact, the used compression method is decomposed to two stages: geometric encoding and topologic encoding. The proposed approach consists to insert a signature between these two stages. First, the wavelet transformation is applied to the original mesh to obtain two components: wavelets coefficients and a coarse mesh. Then, the geometric encoding is done on these two components. The obtained coarse mesh will be marked using a robust mesh watermarking scheme. This insertion into coarse mesh allows obtaining high robustness to several attacks. Finally, the topologic encoding is applied to the marked coarse mesh to obtain the compressed mesh. The combination of compression and watermarking permits to detect the presence of signature after a compression of the marked mesh. In plus, it allows transferring protected 3D meshes with the minimum size. The experiments and evaluations show that the proposed approach presents efficient results in terms of compression gain, invisibility and robustness of the signature against of many attacks.

  15. Experimental Study of Lower-hybrid Drift Turbulence in a Reconnecting Current Sheet

    SciTech Connect

    Carter, T. A.; Yamada, M.; Ji, H.; Kulsrud, R. M.; Trintchouck, F.

    2002-06-18

    The role of turbulence in the process of magnetic reconnection has been the subject of a great deal of study and debate in the theoretical literature. At issue in this debate is whether turbulence is essential for fast magnetic reconnection to occur in collisionless current sheets. Some theories claim it is necessary in order to provide anomalous resistivity, while others present a laminar fast reconnection mechanism based on the Hall term in the generalized Ohm's law. In this work, a thorough study of electrostatic potential fluctuations in the current sheet of the Magnetic Reconnection Experiment (MRX) [M. Yamada et al., Phys. Plasmas 4, 1936 (1997)] was performed in order to ascertain the importance of turbulence in a laboratory reconnection experiment. Using amplified floating Langmuir probes, broadband fluctuations in the lower hybrid frequency range (fLH approximately 5-15 MHz) were measured which arise with the formation of the current sheet in MRX. The frequency spectrum, spatial amplitude profile, and spatial correlation characteristics of the measured turbulence were examined carefully, finding consistency with theories of the lower-hybrid drift instability (LHDI). The LHDI and its role in magnetic reconnection has been studied theoretically for decades, but this work represents the first detection and detailed study of the LHDI in a laboratory current sheet. The observation of the LHDI in MRX has provided the unique opportunity to uncover the role of this instability in collisionless reconnection. It was found that: (1) the LHDI fluctuations are confined to the low-beta edge of current sheets in MRX; (2) the LHDI amplitude does not correlate well in time or space with the reconnection electric field, which is directly related to the rate of reconnection; and (3) significant LHDI amplitude persists in high collisionality current sheets where the reconnection rate is classical. These findings suggest that the measured LHDI fluctuations do not play an

  16. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITH TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  17. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITHOUT TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  18. 3D printed microfluidics for biological applications.

    PubMed

    Ho, Chee Meng Benjamin; Ng, Sum Huan; Li, King Ho Holden; Yoon, Yong-Jin

    2015-01-01

    The term "Lab-on-a-Chip," is synonymous with describing microfluidic devices with biomedical applications. Even though microfluidics have been developing rapidly over the past decade, the uptake rate in biological research has been slow. This could be due to the tedious process of fabricating a chip and the absence of a "killer application" that would outperform existing traditional methods. In recent years, three dimensional (3D) printing has been drawing much interest from the research community. It has the ability to make complex structures with high resolution. Moreover, the fast building time and ease of learning has simplified the fabrication process of microfluidic devices to a single step. This could possibly aid the field of microfluidics in finding its "killer application" that will lead to its acceptance by researchers, especially in the biomedical field. In this paper, a review is carried out of how 3D printing helps to improve the fabrication of microfluidic devices, the 3D printing technologies currently used for fabrication and the future of 3D printing in the field of microfluidics. PMID:26237523

  19. Reconnections of Wave Vortex Lines

    ERIC Educational Resources Information Center

    Berry, M. V.; Dennis, M. R.

    2012-01-01

    When wave vortices, that is nodal lines of a complex scalar wavefunction in space, approach transversely, their typical crossing and reconnection is a two-stage process incorporating two well-understood elementary events in which locally coplanar hyperbolas switch branches. The explicit description of this reconnection is a pedagogically useful…

  20. Collisionless reconnection in Jupiter's magnetotail

    NASA Astrophysics Data System (ADS)

    Zimbardo, G.

    1991-04-01

    Collisionless reconnection in Jupiter's magnetotail is quantitatively studied for the first time. It is proposed that the same tearing mechanism which works in the earth magnetotail also works in Jupiter's. It is shown that collisionless reconnection may occur around 60 R(J) downtail.

  1. Bioprinting of 3D hydrogels.

    PubMed

    Stanton, M M; Samitier, J; Sánchez, S

    2015-08-01

    Three-dimensional (3D) bioprinting has recently emerged as an extension of 3D material printing, by using biocompatible or cellular components to build structures in an additive, layer-by-layer methodology for encapsulation and culture of cells. These 3D systems allow for cell culture in a suspension for formation of highly organized tissue or controlled spatial orientation of cell environments. The in vitro 3D cellular environments simulate the complexity of an in vivo environment and natural extracellular matrices (ECM). This paper will focus on bioprinting utilizing hydrogels as 3D scaffolds. Hydrogels are advantageous for cell culture as they are highly permeable to cell culture media, nutrients, and waste products generated during metabolic cell processes. They have the ability to be fabricated in customized shapes with various material properties with dimensions at the micron scale. 3D hydrogels are a reliable method for biocompatible 3D printing and have applications in tissue engineering, drug screening, and organ on a chip models. PMID:26066320

  2. Unassisted 3D camera calibration

    NASA Astrophysics Data System (ADS)

    Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.

    2012-03-01

    With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.

  3. Arena3D: visualization of biological networks in 3D

    PubMed Central

    Pavlopoulos, Georgios A; O'Donoghue, Seán I; Satagopam, Venkata P; Soldatos, Theodoros G; Pafilis, Evangelos; Schneider, Reinhard

    2008-01-01

    Background Complexity is a key problem when visualizing biological networks; as the number of entities increases, most graphical views become incomprehensible. Our goal is to enable many thousands of entities to be visualized meaningfully and with high performance. Results We present a new visualization tool, Arena3D, which introduces a new concept of staggered layers in 3D space. Related data – such as proteins, chemicals, or pathways – can be grouped onto separate layers and arranged via layout algorithms, such as Fruchterman-Reingold, distance geometry, and a novel hierarchical layout. Data on a layer can be clustered via k-means, affinity propagation, Markov clustering, neighbor joining, tree clustering, or UPGMA ('unweighted pair-group method with arithmetic mean'). A simple input format defines the name and URL for each node, and defines connections or similarity scores between pairs of nodes. The use of Arena3D is illustrated with datasets related to Huntington's disease. Conclusion Arena3D is a user friendly visualization tool that is able to visualize biological or any other network in 3D space. It is free for academic use and runs on any platform. It can be downloaded or lunched directly from . Java3D library and Java 1.5 need to be pre-installed for the software to run. PMID:19040715

  4. Turbulent reconnection and its implications

    PubMed Central

    Lazarian, A.; Eyink, G.; Vishniac, E.; Kowal, G.

    2015-01-01

    Magnetic reconnection is a process of magnetic field topology change, which is one of the most fundamental processes happening in magnetized plasmas. In most astrophysical environments, the Reynolds numbers corresponding to plasma flows are large and therefore the transition to turbulence is inevitable. This turbulence, which can be pre-existing or driven by magnetic reconnection itself, must be taken into account for any theory of magnetic reconnection that attempts to describe the process in the aforementioned environments. This necessity is obvious as three-dimensional high-resolution numerical simulations show the transition to the turbulence state of initially laminar reconnecting magnetic fields. We discuss ideas of how turbulence can modify reconnection with the focus on the Lazarian & Vishniac (Lazarian & Vishniac 1999 Astrophys. J. 517, 700–718 ()) reconnection model. We present numerical evidence supporting the model and demonstrate that it is closely connected to the experimentally proven concept of Richardson dispersion/diffusion as well as to more recent advances in understanding of the Lagrangian dynamics of magnetized fluids. We point out that the generalized Ohm's law that accounts for turbulent motion predicts the subdominance of the microphysical plasma effects for reconnection for realistically turbulent media. We show that one of the most dramatic consequences of turbulence is the violation of the generally accepted notion of magnetic flux freezing. This notion is a cornerstone of most theories dealing with magnetized plasmas, and therefore its change induces fundamental shifts in accepted paradigms, for instance, turbulent reconnection entails reconnection diffusion process that is essential for understanding star formation. We argue that at sufficiently high Reynolds numbers the process of tearing reconnection should transfer to turbulent reconnection. We discuss flares that are predicted by turbulent reconnection and relate this process to

  5. Turbulent reconnection and its implications.

    PubMed

    Lazarian, A; Eyink, G; Vishniac, E; Kowal, G

    2015-05-13

    Magnetic reconnection is a process of magnetic field topology change, which is one of the most fundamental processes happening in magnetized plasmas. In most astrophysical environments, the Reynolds numbers corresponding to plasma flows are large and therefore the transition to turbulence is inevitable. This turbulence, which can be pre-existing or driven by magnetic reconnection itself, must be taken into account for any theory of magnetic reconnection that attempts to describe the process in the aforementioned environments. This necessity is obvious as three-dimensional high-resolution numerical simulations show the transition to the turbulence state of initially laminar reconnecting magnetic fields. We discuss ideas of how turbulence can modify reconnection with the focus on the Lazarian & Vishniac (Lazarian & Vishniac 1999 Astrophys. J. 517, 700-718 (doi:10.1086/307233)) reconnection model. We present numerical evidence supporting the model and demonstrate that it is closely connected to the experimentally proven concept of Richardson dispersion/diffusion as well as to more recent advances in understanding of the Lagrangian dynamics of magnetized fluids. We point out that the generalized Ohm's law that accounts for turbulent motion predicts the subdominance of the microphysical plasma effects for reconnection for realistically turbulent media. We show that one of the most dramatic consequences of turbulence is the violation of the generally accepted notion of magnetic flux freezing. This notion is a cornerstone of most theories dealing with magnetized plasmas, and therefore its change induces fundamental shifts in accepted paradigms, for instance, turbulent reconnection entails reconnection diffusion process that is essential for understanding star formation. We argue that at sufficiently high Reynolds numbers the process of tearing reconnection should transfer to turbulent reconnection. We discuss flares that are predicted by turbulent reconnection and relate

  6. Nonlinear Collisionless Magnetic Reconnection

    SciTech Connect

    Grasso, D.; Tassi, E.; Borgogno, D.; Pegoraro, F.

    2008-10-15

    We review some recent results that have been obtained in the investigation of collisionless reconnection in two and three dimensional magnetic configurations with a strong guide field in regimes of interest for laboratory plasmas. First, we adopt a two-field plasma model where two distinct regimes, laminar and turbulent, can be identified. Then, we show that these regimes may combine when we consider a more general four-field model, where perturbation of the magnetic and velocity fields are allowed also along the ignorable coordinate.

  7. Fdf in US3D

    NASA Astrophysics Data System (ADS)

    Otis, Collin; Ferrero, Pietro; Candler, Graham; Givi, Peyman

    2013-11-01

    The scalar filtered mass density function (SFMDF) methodology is implemented into the computer code US3D. This is an unstructured Eulerian finite volume hydrodynamic solver and has proven very effective for simulation of compressible turbulent flows. The resulting SFMDF-US3D code is employed for large eddy simulation (LES) on unstructured meshes. Simulations are conducted of subsonic and supersonic flows under non-reacting and reacting conditions. The consistency and the accuracy of the simulated results are assessed along with appraisal of the overall performance of the methodology. The SFMDF-US3D is now capable of simulating high speed flows in complex configurations.

  8. A Model of Solar Flares Based on Arcade Field Reconnection and Merging of Magnetic Islands

    SciTech Connect

    G.S. Choe; C.Z. Cheng

    2001-12-12

    Solar flares are intense, abrupt releases of energy in the solar corona. In the impulsive phase of a flare, the intensity of hard X-ray emission reaches a sharp peak indicating the highest reconnection rate. It is often observed that an X-ray emitting plasma ejecta (plasmoid) is launched before the impulsive phase and accelerated throughout the phase. Thus, the plasmoid ejection may not be an effect of fast magnetic reconnection as conventionally assumed, but a cause of fast reconnection. Based on resistive magnetohydrodynamic simulations, a solar flare model is presented, which can explain these observational characteristics of flares. In the model, merging of a newly generated magnetic island and a pre-existing island results in stretching and thinning of a current sheet, in which fast magnetic reconnection is induced. Recurrence of homologous flares naturally arises in this model. Mechanisms of magnetic island formation are also discussed.

  9. Wavefront construction in 3-D

    SciTech Connect

    Chilcoat, S.R. Hildebrand, S.T.

    1995-12-31

    Travel time computation in inhomogeneous media is essential for pre-stack Kirchhoff imaging in areas such as the sub-salt province in the Gulf of Mexico. The 2D algorithm published by Vinje, et al, has been extended to 3D to compute wavefronts in complicated inhomogeneous media. The 3D wavefront construction algorithm provides many advantages over conventional ray tracing and other methods of computing travel times in 3D. The algorithm dynamically maintains a reasonably consistent ray density without making a priori guesses at the number of rays to shoot. The determination of caustics in 3D is a straight forward geometric procedure. The wavefront algorithm also enables the computation of multi-valued travel time surfaces.

  10. Heterodyne 3D ghost imaging

    NASA Astrophysics Data System (ADS)

    Yang, Xu; Zhang, Yong; Yang, Chenghua; Xu, Lu; Wang, Qiang; Zhao, Yuan

    2016-06-01

    Conventional three dimensional (3D) ghost imaging measures range of target based on pulse fight time measurement method. Due to the limit of data acquisition system sampling rate, range resolution of the conventional 3D ghost imaging is usually low. In order to take off the effect of sampling rate to range resolution of 3D ghost imaging, a heterodyne 3D ghost imaging (HGI) system is presented in this study. The source of HGI is a continuous wave laser instead of pulse laser. Temporal correlation and spatial correlation of light are both utilized to obtain the range image of target. Through theory analysis and numerical simulations, it is demonstrated that HGI can obtain high range resolution image with low sampling rate.

  11. Collisionless Three-dimensional Reconnection In Impulsive Solar Flares

    NASA Astrophysics Data System (ADS)

    Somov, Boris V.; Kosugi, Takeo; Sakao, Taro

    1998-04-01

    Two subclasses of impulsive solar flares, observed with the Hard X-Ray Telescope (HXT) onboard Yohkoh, have been discovered by Sakao et al. The two subclasses can be characterized as more impulsive (MI) and less impulsive (LI) flares, the former having a shorter total duration of the impulsive phase in the hard X-ray emission than the latter. We assume that in both subclasses, the collisionless three-dimensional reconnection process occurs at the separator with a longitudinal magnetic field. The high-temperature turbulent-current sheet (HTTCS), located along the separator, generates accelerated particles and fast outflows of ``superhot'' (T >= 30 MK) plasma. Powerful anomalous heat-conductive fluxes along the reconnected field lines maintain a high temperature in the superhot plasma. The difference between the LI and MI flares presumably appears because the footpoint separation (the distance between two brightest hard X-ray sources) increases in time in the LI flares, but decreases in the MI flares. According to our model, in the LI flares the three-dimensional reconnection process accompanies an increase in the longitudinal magnetic field at the separator. In contrast, in the MI flares the reconnection proceeds with a decrease of the longitudinal field; hence, the reconnection rate is higher in the MI flares. Since reconnection in the MI flares proceeds with a decrease of the longitudinal field, the reconnected field lines become shorter in this process. As the reconnected lines become shorter, accelerated electron beams arrive at the upper chromosphere faster. So, in the MI flares chromospheric evaporation begins earlier than in the LI flares. The evaporation process driven by accelerated electron beams generates upflows of ``warm'' (T <= 10 MK) plasma that interacts with downflows of superhot plasma and can switch off the accumulation of superhot plasma in the MI flares during the impulsive phase. In the LI flares, however, an observable amount of superhot

  12. Combinatorial 3D Mechanical Metamaterials

    NASA Astrophysics Data System (ADS)

    Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin

    2015-03-01

    We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist of cubic lattices of anisotropic unit cells that can be tiled in a complex combinatorial fashion. We design and 3d-print this complex ordered mechanism, in which we combine elastic hinges and defects to tailor the mechanics of the material. Finally, we use this large design space to encode smart functionalities such as surface patterning and multistability.

  13. Numerical simulation of three-dimensional reconnection due to the instability of collisionless current sheets

    NASA Astrophysics Data System (ADS)

    Büchner, J.; Kuska, J.-P.

    1997-01-01

    Based on analytical calculations we have currently argued that spontaneous reconnection through thin collisionless current sheets is an essentially three-dimensional (3 D) process (Büchner, 1996 a, b). Since 3 D kinetic PIC codes have become available, the three dimensional nature of the collisionless current sheet decay are now illustrated by numerical simulations (Büchner and Kuska, 1996; Pritchett and Coroniti, 1996; Zhu and Winglee, 1996). While the latter two claim a coupling to a longer wavelength kink mode as a main factor, destabilizing thin current sheets in 3 D, our simulations have revealed that even shorter scale perturbations in the current direction suffice to destabilize thin sheets very quickly. Since past simulation runs, however, were limited to mass ratios near unity, the influence of the electrons was not treated adequately. We have now investigated the stability of thin collisionless current sheets including 64 times lighter negatively charged particles. We can now show that while the two-dimensional tearing instability slows down for M = M_p/m_e = 64, the three-dimensional current sheet decay is a much faster process - practically as fast as the mass ratio M = 1 3 D sheet decay, even without kinking the sheet. We further conclude that, unlike the two-dimensional tearing instability, the three-dimensional decay of thin current sheets is not controlled by the electrons. For a sheet width comparable with the ion inertial length, we also recovered signatures of the Hall effect as predicted by Vasyliunas (1975) in the mass ratio M = 64 case. The ion inertial length seems to be the critical scale at which the sheet starts to decay.

  14. 3D-Net: the development of a new real-time photogrammetric system

    NASA Astrophysics Data System (ADS)

    Clarke, Timothy A.; Gooch, R. M.; Ariyawansa, Dambakumbure D.; Wang, Xinchi

    1997-07-01

    There are three essential requirements for real-time 3D measurement using targeted points: fast 2D image processing; a fast solution to the correspondence problem; and fast computation of 3D coordinates. This paper brings together research work to produce such solutions and considers other work which has appeared during the project duration.

  15. Magnetic reconnection launcher

    DOEpatents

    Cowan, Maynard

    1989-01-01

    An electromagnetic launcher includes a plurality of electrical stages which are energized sequentially in synchrony with the passage of a projectile. Each stage of the launcher includes two or more coils which are arranged coaxially on either closed-loop or straight lines to form gaps between their ends. The projectile has an electrically conductive gap-portion that passes through all the gaps of all the stages in a direction transverse to the axes of the coils. The coils receive an electric current, store magnetic energy, and convert a significant portion of the stored magnetic energy into kinetic energy of the projectile by magnetic reconnection as the gap portion of the projectile moves through the gap. The magnetic polarity of the opposing coils is in the same direction, e.g. N-S-N-S. A gap portion of the projectile may be made from aluminum and is propelled by the reconnection of magnetic flux stored in the coils which causes accelerating forces to act upon the projectile at both the rear vertical surface of the projectile and at the horizontal surfaces of the projectile near its rear. The gap portion of the projectile may be flat, rectangular and longer than the length of the opposing coils and fit loosely within the gap between the opposing coils.

  16. Effects of electron inertia in collisionless magnetic reconnection

    SciTech Connect

    Andrés, Nahuel Gómez, Daniel; Martin, Luis; Dmitruk, Pablo

    2014-07-15

    We present a study of collisionless magnetic reconnection within the framework of full two-fluid MHD for a completely ionized hydrogen plasma, retaining the effects of the Hall current, electron pressure and electron inertia. We performed 2.5D simulations using a pseudo-spectral code with no dissipative effects. We check that the ideal invariants of the problem are conserved down to round-off errors. Our numerical results confirm that the change in the topology of the magnetic field lines is exclusively due to the presence of electron inertia. The computed reconnection rates remain a fair fraction of the Alfvén velocity, which therefore qualifies as fast reconnection.

  17. Effects of electron inertia in collisionless magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Andrés, Nahuel; Martin, Luis; Dmitruk, Pablo; Gómez, Daniel

    2014-07-01

    We present a study of collisionless magnetic reconnection within the framework of full two-fluid MHD for a completely ionized hydrogen plasma, retaining the effects of the Hall current, electron pressure and electron inertia. We performed 2.5D simulations using a pseudo-spectral code with no dissipative effects. We check that the ideal invariants of the problem are conserved down to round-off errors. Our numerical results confirm that the change in the topology of the magnetic field lines is exclusively due to the presence of electron inertia. The computed reconnection rates remain a fair fraction of the Alfvén velocity, which therefore qualifies as fast reconnection.

  18. Prospects for Fermi Particle Acceleration at Coronal Magnetic Reconnection Sites

    NASA Astrophysics Data System (ADS)

    Provornikova, E.; Laming, J. M.; Lukin, V.

    2015-12-01

    The mechanism of first order Fermi acceleration of particles interacting with the converging magnetized flows at a reconnection site was introduced recently in an attempt to predict the energy distribution of particles resulting from violent reconnection in galactic microquasars. More careful consideration of this mechanism showed that the spectral index of accelerated particles is related to the total plasma compression within a reconnection region, similar to that in the formulation for diffusive shock acceleration. In the solar context, reconnection regions producing strong compression could be the source of suprathermal "seed particles". A hard spectrum of such suprathermal particles is believed to be necessary to initiate the particle acceleration process at low Mach number coronal mass ejection shocks close to the Sun where the gradual solar energetic particle events originate. As a first step to investigate the efficiency of Fermi acceleration, we explore the degree of plasma compression that can be achieved at reconnection sites in the solar corona. This work presents a set of 2D two-temperature resistive MHD simulations of the dynamics of several magnetic configurations within a range of lower corona plasma parameters. Energy transport processes in the MHD model include anisotropic thermal conduction for electrons and ions and radiative cooling. Magnetic configurations considered are a Harris current sheet, a force-free current sheet, a flux rope sitting above an arcade of magnetic loops, and two merging flux ropes. We demonstrate that only for some magnetic topologies, corresponding in particular to 3D magnetic nulls, the compression ratio, sufficient for first order Fermi acceleration in the reconnection region, can be achieved. These represent the potential sites in the solar corona where a hard seed particle energetic spectrum could be produced.

  19. New observations of flux ropes in the magnetotail reconnection region