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Sample records for 3d fast reconnection

  1. INFFTM: Fast evaluation of 3d Fourier series in MATLAB with an application to quantum vortex reconnections

    NASA Astrophysics Data System (ADS)

    Caliari, Marco; Zuccher, Simone

    2017-04-01

    Although Fourier series approximation is ubiquitous in computational physics owing to the Fast Fourier Transform (FFT) algorithm, efficient techniques for the fast evaluation of a three-dimensional truncated Fourier series at a set of arbitrary points are quite rare, especially in MATLAB language. Here we employ the Nonequispaced Fast Fourier Transform (NFFT, by J. Keiner, S. Kunis, and D. Potts), a C library designed for this purpose, and provide a Matlab® and GNU Octave interface that makes NFFT easily available to the Numerical Analysis community. We test the effectiveness of our package in the framework of quantum vortex reconnections, where pseudospectral Fourier methods are commonly used and local high resolution is required in the post-processing stage. We show that the efficient evaluation of a truncated Fourier series at arbitrary points provides excellent results at a computational cost much smaller than carrying out a numerical simulation of the problem on a sufficiently fine regular grid that can reproduce comparable details of the reconnecting vortices.

  2. 3D Hall MHD Reconnection Dynamics

    NASA Astrophysics Data System (ADS)

    Huba, J. D.; Rudakov, L.

    2002-05-01

    A 3D Hall MHD simulation code (VooDoo) has recently been developed at the Naval Research Laboratory. We present preliminary results of a fully 3D magnetic reconnection study using this code. The initial configuration of the plasma system is as follows. The ambient, reversed magnetic field is in the x-direction and is proportional to B0 tanh(y/Ly) where Ly is the scale length of the current sheet. Perturbation fields δ Bx and δ By are introduced to initiate the reconnection process. This initial configuration is similar to that used in the 2D GEM reconnection study. However, the perturbation fields are localized in the z-direction. We consider two cases: no guide field (Bz = 0) and a weak guide field (Bz = 0.1B0). We find that the reconnection process is not stationary in the z-direction but propagates in the B x ∇ n direction consistent with Hall drift physics. Hence, an asymmetric disruption of the current sheet ensues. The flow structure of the plasma in the vicinity of the X-point is complex. We find that the `neutral line' (i.e, along the z-direction) is not an ignorable coordinate and is not periodic in Hall MHD reconnection dynamics; two assumptions that are often made in reconnection studies. \\ Research supported by NASA and ONR

  3. Impulsive reconnection: 3D onset and stagnation in turbulent paradigms

    SciTech Connect

    Sears, Jason A; Intrator, Thomas P; Weber, Tom; Lapenta, Giovanni; Lazarian, Alexander

    2010-12-14

    Reconnection processes are ubiquitous in solar coronal loops, the earth's magnetotail, galactic jets, and laboratory configurations such as spheromaks and Z pinches. It is believed that reconnection dynamics are often closely linked to turbulence. In these phenomena, the bursty onset of reconnection is partly determined by a balance of macroscopic MHD forces. In a turbulent paradigm, it is reasonable to suppose that there exist many individual reconnection sites, each X-line being finite in axial extent and thus intrinsically three-dimensional (3D) in structure. The balance between MHD forces and flux pile-up continuously shifts as mutually tangled flux ropes merge or bounce. The spatial scale and thus the rate of reconnection are therefore intimately related to the turbulence statistics both in space and in time. We study intermittent 3D reconnection along spatially localized X-lines between two or more flux ropes. The threshold of MHD instability which in this case is the kink threshold is varied by modifying the line-tying boundary conditions. For fast inflow speed of approaching ropes, there is merging and magnetic reconnection which is a well known and expected consequence of the 2D coalescence instability. On the other hand, for slower inflow speed the flux ropes bounce. The threshold appears to be the Sweet Parker speed v{sub A}/S{sup 1/2}, where v{sub A} is the Alfven speed and S is the Lundquist number. Computations by collaborators at University of Wisconsin, Madison, Katholieke Universiteit Leuven, and LANL complement the experiment.

  4. 3-D, Impulsive Magnetic Reconnection in a Laboratory Plasma (Invited)

    NASA Astrophysics Data System (ADS)

    Dorfman, S. E.; Ji, H.; Yamada, M.; Yoo, J.; Myers, C. E.; Roytershteyn, V.; Daughton, W. S.; Jara-Almonte, J.

    2013-12-01

    Magnetic reconnection is a fundamental plasma process involving the efficient conversion of magnetic field energy to plasma kinetic energy through changing field line topology. In many space and astrophysical systems, including the solar surface and the Earth's magnetotail, reconnection is not only fast, but also impulsive; in other words, a slow buildup phase is followed by a comparatively quick release of magnetic energy. An important question in the literature is if these examples of impulsive reconnection can be described by a two-dimensional model with no variation in the out-of-plane direction or if impulsive reconnection is fundamentally three-dimensional. Events observed on the Magnetic Reconnection Experiment (MRX) are characterized by large local gradients in the third direction and cannot be explained by 2-D models [1]. Detailed measurements show that the ejection of flux rope structures from the current sheet plays a key role in these events. By contrast, even though electromagnetic fluctuations in the lower hybrid frequency range are also observed concurrently with the impulsive behavior, they are not the key physics responsible. Furthermore, an important discrepancy in the layer width and force balance between the collisionless regime of MRX and kinetic simulations [2-4] persists when the fluctuations are small or absent, implying that they are not the cause of the wider electron layers observed in the experiment [5]. These wider layers may instead be due to the formation of flux ropes with a wide range of sizes; consistent with this hypothesis, flux rope signatures are observed down to the smallest scales resolved by the diagnostics. Finally, a qualitative, 3-D, two-fluid model is proposed to explain the observed disruptions. Many of the features observed in MRX including current disruptions [6], flux ropes [7], and electromagnetic fluctuations [8] have analogues in space observations. Thus, further detailed comparisons may enhance our understanding

  5. Global Magnetospheric Modeling of 3D Reconnection

    NASA Technical Reports Server (NTRS)

    Spicer, Daniel S.

    1999-01-01

    A review of approaches to the global modeling of the terrestrial magnetosphere, how these approaches are utilized to interpret satellite data, and how these approaches have been successful at predicting magnetospheric phenomena will be presented. In addition, the importance of the ionospheric boundary and its effect on the globally topology of the magnetospheric magnetic field will be reviewed. In particular, numerical results that are rapidly changing our view of magnetospheric reconnection within the magnetospheric magnetic field will be discussed.

  6. Experimental observation of 3-D, impulsive reconnection events in a laboratory plasma

    SciTech Connect

    Dorfman, S.; Ji, H.; Yamada, M.; Yoo, J.; Lawrence, E.; Myers, C.; Tharp, T. D.

    2014-01-15

    Fast, impulsive reconnection is commonly observed in laboratory, space, and astrophysical plasmas. In this work, impulsive, local, 3-D reconnection is identified for the first time in a laboratory current sheet. The two-fluid, impulsive reconnection events observed on the Magnetic Reconnection Experiment (MRX) [Yamada et al., Phys Plasmas 4, 1936 (1997)] cannot be explained by 2-D models and are therefore fundamentally three-dimensional. Several signatures of flux ropes are identified with these events; 3-D high current density regions with O-point structure form during a slow buildup period that precedes a fast disruption of the reconnecting current layer. The observed drop in the reconnection current and spike in the reconnection rate during the disruption are due to ejection of these flux ropes from the layer. Underscoring the 3-D nature of the events, strong out-of-plane gradients in both the density and reconnecting magnetic field are found to play a key role in this process. Electromagnetic fluctuations in the lower hybrid frequency range are observed to peak at the disruption time; however, they are not the key physics responsible for the impulsive phenomena observed. Important features of the disruption dynamics cannot be explained by an anomalous resistivity model. An important discrepancy in the layer width and force balance between the collisionless regime of MRX and kinetic simulations is also revisited. The wider layers observed in MRX may be due to the formation of flux ropes with a wide range of sizes; consistent with this hypothesis, flux rope signatures are observed down to the smallest scales resolved by the diagnostics. Finally, a 3-D two-fluid model is proposed to explain how the observed out-of-plane variation may lead to a localized region of enhanced reconnection that spreads in the direction of the out-of-plane electron flow, ejecting flux ropes from the layer in a 3-D manner.

  7. Quantifying Reconnection in Fragmented 3D Current Layers

    NASA Astrophysics Data System (ADS)

    Wyper, Peter Fraser; Hesse, Michael

    2015-04-01

    There is growing evidence that when magnetic reconnection occurs in high Lundquist number plasmas such as in the Solar Corona or the Earth's Magnetosphere it does so within a fragmented, rather than a smooth current layer. Within the extent of these fragmented current regions the associated magnetic flux transfer and energy release occurs simultaneously in many different places. This simultaneous energy release and flux transfer has been postulated as a possible resolution to the problem of obtaining “fast” reconnection rates in such high conductivity plasmas. But how does one measure the reconnection rate in such fragmented current layers?In 2D the reconnection rate is simply given by the electric field at the dominant X-point, typically then normalized by the product of the upstream magnetic field strength and Alfven speed. However, the continuous nature of connection change in 3D makes measuring the reconnection rate much more challenging. Building on the analytical work of previous investigations (e.g. Hesse & Schindler 1988, Hesse & Birn 1993, Hesse et al. 2005) we present recently derived expressions providing, for the first time, a quantitative measure of reconnection rate in fragmented 3D current layers. We show that in 3D two measures actually characterize the rate of flux transfer; a total rate which measures the true rate at which new connections are formed and a net rate which measures the net change of connection associated with the largest value of ∫E‖dl through all of the non-ideal regions. Some simple examples will be used to illustrate how each expression may be applied and what it quantifies. This work was supported by an appointment to the NASA Postdoctoral Program and by NASA’s Magnetospheric Multiscale mission.

  8. Mechanisms for fast flare reconnection

    NASA Technical Reports Server (NTRS)

    Vanhoven, G.; Deeds, D.; Tachi, T.

    1988-01-01

    Normal collisional-resistivity mechanisms of magnetic reconnection have the drawback that they are too slow to explain the fast rise of solar flares. Two methods are examined which are proposed for the speed-up of the magnetic tearing instability: the anomalous enhancement of resistivity by the injection of MHD turbulence and the increase of Coulomb resistivity by radiative cooling. The results are described for nonlinear numerical simulations of these processes which show that the first does not provide the claimed effects, while the second yields impressive rates of reconnection, but low saturated energy outputs.

  9. Particle acceleration at 3D reconnecting magnetic separators

    NASA Astrophysics Data System (ADS)

    Threlfall, James; Neukirch, Thomas; Parnell, Clare; Stevenson, Julie

    2015-04-01

    We present results of test particle orbit calculations in three different environments which model separator reconnection in three dimensions. The test particle (electron and proton) orbits are calculated using the relativistic guiding centre approximation. We investigate test particle orbits in a time-dependent (analytical) electro-magnetic field configuration [detailed in Threlfall et al. (A&A, in press); arXiv:1410.6465]. These results are also compared with orbits based upon large-scale 3D MHD simulations of both a single reconnecting magnetic separator and an observationally driven 3D model of a solar active region which contains several topological features of interest, including separators. We discuss how the test-particle orbits and the energy gain depend on the initial conditions, and how observations (for example, of solar flares) may be used to constrain model parameters.

  10. Experimental study of 3-D, impulsive reconnection events in a laboratory plasma

    NASA Astrophysics Data System (ADS)

    Dorfman, Seth Elliot

    Fast, impulsive reconnection is commonly observed in laboratory, space and astrophysical plasmas. Many existing models of reconnection attempt to explain this behavior without including variation in the third direction. However, the impulsive reconnection events observed on the Magnetic Reconnection Experiment (MRX) which are described in this dissertation cannot be explained by 2-D models and are therefore fundamentally three-dimensional. These events include both a slow buildup phase and a fast current layer disruption phase. The buildup phase is characterized by a slow transition from collisional to collisionless reconnection and the formation of "flux rope" structures; these "flux ropes" are defined as 3-D high current density regions associated with an O point at the measurement location. In the disruption phase, the "flux ropes" are ejected from the reconnection layer as the total current drops and the reconnection rate spikes. Strong out-of-plane gradients in both the density and reconnecting magnetic field are another key feature of disruptive discharges; after finite upstream density is depleted by reconnection during the buildup phase, the out of plane magnetic field gradient flattens and this disruption spreads in the electron flow direction. Electromagnetic fluctuations in the lower hybrid frequency range are observed to peak at the disruption time; however, they are not the key physics responsible for the impulsive phenomena observed. Important features of the disruption dynamics cannot be explained by an anomalous resistivity model. Furthermore, an important discrepancy in the layer width and force balance between the collisionless regime of MRX and kinetic simulations persists when the fluctuations are small or absent, implying that they are not the cause of the wider electron layers observed in the experiment. These wider layers may instead be due to the formation of flux ropes with a wide range of sizes; consistent with this hypothesis, flux rope

  11. Physical mechanism of spontaneous fast reconnection evolution

    NASA Astrophysics Data System (ADS)

    Ugai, M.

    2001-06-01

    Large dissipative events, such as solar flares and geomagnetic substorms, result from sudden onset of magnetic reconnection, so that it is a long-standing problem to find the physical mechanism that makes magnetic reconnection explosive. As recognized by Petschek, standing slow shocks enable the effective magnetic energy conversion in space plasmas of extremely large magnetic Reynolds number. Hence, a basic question is how the fast reconnection mechanism involving slow shocks can be realized as an eventual solution? We have proposed the spontaneous fast reconnection model, which describes a new type of nonlinear instability that grows by the positive feedback between plasma microphysics (current-driven anomalous resistivity) and macrophysics (global reconnection flow). It is demonstrated that the fast reconnection mechanism explosively grows by the positive feedback in a variety of physical situations; for the larger threshold of anomalous resistivity, the fast reconnection evolves more drastically. Also, distinct plasma processes, such as large-scale plasmoid and magnetic loop dynamics, result directly from the fast reconnection evolution. Even in general asymmetric situations, the spontaneous fast reconnection model effectively works, giving rise to drastic magnetic flux transfer.

  12. Local and Global 3-D Effects in the Magnetic Reconnection Experiment (MRX)

    NASA Astrophysics Data System (ADS)

    Dorfman, S.; Ji, H.; Yamada, M.; Oz, E.; Yoo, J.; Daughton, W.; Roytershteyn, V.

    2009-11-01

    One of the key open questions in Magnetic Reconnection is the nature of the mechanism that governs the reconnection rate in real astrophysical and laboratory systems. Comparisons between fully kinetic 2-D simulations of the Magnetic Reconnection Experiment (MRX) and experimental data show that the 2-D, collisionless expression for the electric field due to particle dynamics [1] does not match MRX data; related to this is a factor of 3-5 discrepancy in the layer width [2,3]. Adding collisions to the simulation leads to a broadening of the layer, but the level of collisionality present in MRX may not be high enough to resolve the discrepancy. Ongoing research on MRX explores the role of fluctuations and 3-D effects in the force balance. Significant toroidal asymmetries have been found, manifested by regions of high inductive electric field moving in the electron flow direction within the layer. Electromagnetic fluctuations in the lower hybrid frequency range [4] tend to occur in discharges with high local currents and a rapid local reconnection rate. The precise relation of these phenomena to fast reconnection is actively being investigated. [1] M. Hesse, et al., Phys. Plasmas, 6:1781 (1999). [2] Y. Ren, et al., Phys. Plasmas 15, 082113 (2008). [3] S. Dorfman, et al., Phys. Plasmas 15, 102107 (2008). [4] H. Ji, et al., Phys.Rev.Lett. 92 (2004) 115001. Supported by NDSEG, DOE, NASA, and NSF.

  13. Experimental Studies on the 3D Macro- and Microphysics of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Jara-Almonte, J.; Ji, H.; Yamada, M.; Yoo, J.; Fox, W. R., II

    2015-12-01

    Magnetic reconnection has been extensively studied in 2D geometries for many decades and considerable progress has been made in understating 2D reconnection physics, yet in real plasmas reconnection is fundamentally 3D in nature. Only recently has it become possible to study 3D reconnection using simulations, however some initial results have suggested that the inclusion of 3D effects does not strongly affect the basic properties of reconnection (e.g. reconnection rate or particle acceleration). Yet on the other hand, previous experiments, without direct 3D measurements, have implied that 3D effects could be important even in a quasi-2D system. Here we experimentally study both the (1) macro- and (2) microphysics of 3D reconnection in order to directly test the importance of 3D effects in a quasi-2D experiment. Using fully simultaneous 3D measurements, it is shown that during highly driven reconnection the macroscopic structure of the current sheet can become strongly 3D despite an essentially 2D upstream region. The correlation length along the current sheet is measured to be far shorter than suggested by kinetic simulations. Results from new experiments with stronger reconnection drive and diagnostics designed to estimate the 3D reconnection rate will be discussed. With regards to (2), the 3D microphysics, new diagnostics capable of measuring fluctuations at frequencies up to the electron cyclotron frequency (~ 300 MHz) have been developed and have identified the presence of very high frequency waves (~ 100 MHz) during asymmetric reconnection, localized to the low-density side. The detailed properties of these waves, including the measured power spectra and dispersion relation, will be discussed and compared with both previous satellite observations of high-frequency waves as well as with theoretical predictions on the generation of whistler waves during reconnection.

  14. Fast Reconnection of Weak Magnetic Fields

    NASA Technical Reports Server (NTRS)

    Zweibel, Ellen G.

    1998-01-01

    Fast magnetic reconnection refers to annihilation or topological rearrangement of magnetic fields on a timescale that is independent (or nearly independent) of the plasma resistivity. The resistivity of astrophysical plasmas is so low that reconnection is of little practical interest unless it is fast. Yet, the theory of fast magnetic reconnection is on uncertain ground, as models must avoid the tendency of magnetic fields to pile up at the reconnection layer, slowing down the flow. In this paper it is shown that these problems can be avoided to some extent if the flow is three dimensional. On the other hand, it is shown that in the limited but important case of incompressible stagnation point flows, every flow will amplify most magnetic fields. Although examples of fast magnetic reconnection abound, a weak, disordered magnetic field embedded in stagnation point flow will in general be amplified, and should eventually modify the flow. These results support recent arguments against the operation of turbulent resistivity in highly conducting fluids.

  15. Mini-conference Poster: 3D Onset and Propagation of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Ricci, P.; Brackbill, J. U.; Daughton, W.; Delzanno, G. L.

    2005-10-01

    A fundamental problem in reconnection physics is how to relate 2D and 3D reconnection. The great majority of studies of reconnection focus on 2D configurations. The state of affair is best described by the cave allegory of Plato. In 2D we look at the reconnection process as if we were studying the real world through its reflections on the walls of a cave [1]. We propose to turn our head away from the familiar wall and face the real world. We do 3D fully kinetic (i.e. both electrons and ions are kinetic) simulations of reconnection. We use the implicit PIC code CELESTE to achieve parameter ranges and system sizes inaccessible to traditional explicit codes. Our results will clarify the fundamental issue: if reconnection is started at one location, does it propagate in the system? How? And what coupling of microscopic and macroscopic processes causes the reconnection onset in the first place? All these effects can only be studied in 3D [2]. The crucial physics missing in 2D simulations is the role of macroscopic equilibrium changes induced by the microinstabilities [3].1) Plato, Republic, Book VII, Hackett Pub. Co., 1992. 2) P. Ricci, J.U. Brackbill, W.S. Daughton, G. Lapenta, Phys. Plasmas, 11, 4489, 2004.3) W. Daughton, G. Lapenta, P. Ricci, Phys. Rev. Lett., 93, 105004, 2004.

  16. Nonthermal Particle Acceleration in 3D Relativistic Magnetic Reconnection in Pair Plasma

    NASA Astrophysics Data System (ADS)

    Uzdensky, Dmitri; Werner, Gregory; Zhdankin, Vladimir

    2016-10-01

    Magnetic reconnection is a fundamental plasma process that converts magnetic energy into particle kinetic energy. ``Relativistic'' reconnection is of interest in astrophysical contexts because it can accelerate particles to relativistic energies high enough for synchrotron (or inverse Compton) emission to explain observed high-energy radiation. After several 2D particle-in-cell (PIC) simulations of reconnection in pair plasmas demonstrated power-law electron-energy spectra extending to high energies, a few 3D simulations surprisingly confirmed the robustness of nonthermal particle acceleration, despite fundamental differences, such as the development of the relativistic drift-kink instability (RDKI) in 3D. We present a comprehensive PIC study of 3D relativistic pair-plasma reconnection characterizing the effect of the third dimension. We investigate how reconnection dynamics and particle acceleration depend on guide magnetic field Bz and on the simulation box length Lz in the third dimension. We find that, while the RDKI does indeed grow in 3D reconnection, it does not inhibit particle acceleration, even in the absence of guide field. This work was funded by NSF, DOE, and NASA.

  17. Conceptual design of the 3D magnetic field configuration relevant to the magnetopause reconnection in the SPERF

    NASA Astrophysics Data System (ADS)

    Mao, Aohua; Ji, Hantao; Ren, Yang; E, Peng; Wang, Zhibin; Xiao, Qingmei; Xiao, Chijie

    2016-10-01

    A new terrella device, the Space Plasma Environment Research Facility (SPERF), is designed and under construction in China, with Asymmetric Reconnection EXperiment (AREX) as one component to study the interaction between the magnetosheath and magnetosphere plasmas. AREX will provide a unique platform for studying asymmetric magnetic reconnection relevant to the magnetopause, via a set of coils for simulating ``solar-wind-side'' magnetosheath field and a dipole field on the ``magnetosphere-side''. Thus it could be able to investigate a range of important issues in the magnetosphere geometry, such as the electron and ion-scale dynamics in the current sheet, particle and energy transfer from magnetosheath to magnetosphere, particle energization/heating during magnetic reconnection, 3D and asymmetric effects in fast reconnection, and so on. The plasma is generated by two flux cores at the ``magnetosheath-side'' and one electron cyclotron resonance source at the ``magnetosphere-side''. Different kinds of coils with specific current driven functions, as well as advanced diagnostics are designed. Motivation, overview of the AREX design and reconnection scenarios will be discussed.

  18. Fast magnetic reconnection with large guide fields

    DOE PAGES

    Stanier, A.; Simakov, Andrei N.; Chacón, L.; ...

    2015-01-09

    We domonstrate, using two-fluid simulations, that low-βmagnetic reconnection remains fast, regardless of the presence of fast dispersive waves, which have been previously suggested to play a critical role. In order to understand these results, a discrete model is constructed that offers scaling relationships for the reconnection rate and dissipation region (DR) thickness in terms of the upstream magnetic field and DR length. Moreover, we verify these scalings numerically and show how the DR self-adjusts to process magnetic flux at the same rate that it is supplied to a larger region where two-fluid effects become important. The rate is therefore independentmore » of the DR physics and is in good agreement with kinetic results.« less

  19. 3D instabilities connected with reconnection in full 3D PIC simulations

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni

    2013-10-01

    Kinetic reconnection is characterized by a distinct behavior of electrons and ions with regions of strong relative speeds between the species. Electrons can flow at great speed relative to ions and can be characterized by a strong non-gyrotropy and anisotropy. When studied in full three dilensions, these electron peculiar properties can drive numerous instabilities that have been investigated by the suggested speaker and his collaborators in a number of recent published papers. Two regions have received most attention: 1) the separatrices where instabilities are caused by the electron flow and the electron phase space features, 2) the downstream fronts where an interchange instability leads to strong energy exchanges and secondary reconnection. In both situations the ions are demagnitezed but the electrons are not and their behaviour is rich in full kinetic processes. At the separatrices, two types of instabilities have been observed. The electron phase space is characterized by multiple populations at relative drifts (electron beams) and the whole electron species is drifting with respect to the ions. This condition is subject to different streaming instabilities. Additionally, the separatrices are regions of intense density and flow shear, with free energy available to drive Kelvin-Helmholtz-type instabilities. In the downstream fronts of reconnection, a density gradient develops in conditions where the acceleration is directed unfavourably for stability, leading to ballooning and interchange-type instabilities. Both cases are of great importance for the upcoming Magnetospheric Multiscale Mission that is bent on finding and analyzing the regions where the electron scale physics is dominant. The processes discussed above can provide key information for the operation of the mission and the interpretation of its results. Collaboration between the University of Colorado NASA-MMSIDS team (M. Goldman, D. Newman, L. Anderson, S. Erikson) and the KULeuven Swiff team

  20. Redistribution of fast ions during sawtooth reconnection

    NASA Astrophysics Data System (ADS)

    Jaulmes, F.; Westerhof, E.; de Blank, H. J.

    2014-10-01

    In a tokamak-based fusion power plant, possible scenarios may include regulated sawtooth oscillations to remove thermalized helium from the core of the plasma. During a sawtooth crash, the helium ash and other impurities trapped in the core are driven by the instability to an outer region. However, in a fusion plasma, high energy ions will represent a significant population. We thus study the behaviour of these energetic particles during a sawtooth. This paper presents the modelling of the redistribution of fast ions during a sawtooth reconnection event in a tokamak plasma. Along the lines of the model for the evolution of the flux surfaces during a sawtooth collapse described in Ya.I. Kolesnichenko and Yu.V. Yakovenko 1996 Nucl. Fusion 36 159, we have built a time-dependent electromagnetic model of a sawtooth reconnection. The trajectories of the ions are described by a complete gyro-orbit integration. The fast particles were evolved from specific initial parameters (given energy and uniform spread in pitch) or distributed initially according to a slowing-down distribution created by fusion reactions. Our modelling is used to understand the main equilibrium parameters driving the motions during the collapse and to determine the evolution of the distribution function of energetic ions when different geometries of reconnection are considered.

  1. Magnetospheric Magnetic Reconnection with Southward IMF by a 3D EMPM Simulation

    NASA Technical Reports Server (NTRS)

    Nishikawa, K.-I.; Yan, X. Y.; Cai, D. S.; Lembege, B.

    2004-01-01

    We report our new simulation results on magnetospheric magnetic reconnection with southward IMF using a 3D EMPM model, with greater resolution and more particles using the parallelized 3D HPF TRISTAN code on VPP5000 supercomputer. Main parameters used in the new simulation are: domain size is 215 x 145 x 145, grid size = 0.5 Earth radius, initial particle number is 16 per cell, the IMF is southward. Arrival of southward IMF will cause reconnection in the magnetopause, thus allowing particles to enter into the inner magnetosphere. Sunward and tailward high particle flow are observed by satellites, and these phenomena are also observed in the simulation near the neutral line (X line) of the near-Earth magnetotail. This high particle flow goes along with the reconnected island. The magnetic reconnection process contributes to direct plasma entry between the magnetosheath to the inner magnetosphere and plasma sheet, in which the entry process eats the magnetosheath plasma to plasma sheet temperatures. We investigate magnetic, electric fields, density, and current during this magnetic reconnection with southward IMF. Further investigation with this simulation will provide insight into unsolved problems, such as the triggering of storms and substorms, and the storm-substorm relationship. New results will be presented at the meeting.

  2. Experimental onset threshold and magnetic pressure pileup for 3D Sweet-Parker reconnection

    SciTech Connect

    Intrator, Thomas P; Sun, Xuan; Lapenta, Giovanni; Furno, Ivo

    2008-01-01

    In space, astrophysical and laboratory plasmas, magnetic reconnect ion converts magnetic into particle energy during unsteady, explosive events. The abrupt onset and cessation has been a long standing puzzle. We show the first three-dimensional (3D) laboratory example of onset and stagnation of Sweet-Parker type magnetic reconnection between magnetized and parallel current (flux) ropes driven by magnetohydrodynamic (MHD) attraction and 3D instability. Mutually attracting flux ropes advect and merge oppositely directed magnetic fields. Magnetic flux is annihilated, but reaches soon a threshold where magnetic flux and pressure pile up, and reconnection magnetic topology appears. This occurs when inflow speeds exceed the SweetParker speed v{sub SP} = v{sub A} / S{sup 1/2}, where v{sub A} is the Alfven speed and S is the Lundquist number for the reconnection layer, as magnetic flux arrives faster than flux annihilation can process it. Finally piled up fields generate MHD reaction forces that stall the inflow and the reconnection process.

  3. FastScript3D - A Companion to Java 3D

    NASA Technical Reports Server (NTRS)

    Koenig, Patti

    2005-01-01

    FastScript3D is a computer program, written in the Java 3D(TM) programming language, that establishes an alternative language that helps users who lack expertise in Java 3D to use Java 3D for constructing three-dimensional (3D)-appearing graphics. The FastScript3D language provides a set of simple, intuitive, one-line text-string commands for creating, controlling, and animating 3D models. The first word in a string is the name of a command; the rest of the string contains the data arguments for the command. The commands can also be used as an aid to learning Java 3D. Developers can extend the language by adding custom text-string commands. The commands can define new 3D objects or load representations of 3D objects from files in formats compatible with such other software systems as X3D. The text strings can be easily integrated into other languages. FastScript3D facilitates communication between scripting languages [which enable programming of hyper-text markup language (HTML) documents to interact with users] and Java 3D. The FastScript3D language can be extended and customized on both the scripting side and the Java 3D side.

  4. Secondary reconnection, energisation and turbulence in dipolarisation fronts: results of a 3D kinetic simulation campaign

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Goldman, Martin; Newman, David; olshevskyi, Vyacheslav; Markidis, Stefano

    2016-04-01

    Dipolarization fronts (DF) are formed by reconnection outflows interacting with the pre-existing environment. These regions are host of important energy exchanges [1], particle acceleration [2] and a complex structure and evolution [3]. Our recent work has investigated these regions via fully kinetic 3D simulations [4]. As reported recently on Nature Physics [3], based on 3D fully kinetic simulations started with a well defined x-line, we observe that in the DF reconnection transitions towards a more chaotic regime. In the fronts an instability devel- ops caused by the local gradients of the density and by the unfavourable acceleration and field line curvature. The consequence is the break up of the fronts in a fashion similar to the classical fluid Rayleigh-Taylor instability with the formation of "fingers" of plasma and embedded magnetic fields. These fingers interact and produce secondary reconnection sites. We present several different diagnostics that prove the existence of these secondary reconnection sites. Each site is surrounded by its own electron diffusion region. At the fronts the ions are generally not magnetized and considerable ion slippage is present. The discovery we present is that electrons are also slipping, forming localized diffusion regions near secondary reconnection sites [1]. The consequence of this discovery is twofold. First, the instability in the fronts has strong energetic implications. We observe that the energy transfer locally is very strong, an order of magnitude stronger than in the "X" line. However, this energy transfer is of both signs as it is natural for a wavy rippling with regions of magnetic to kinetic and regions of kinetic to magnetic energy conversion. Second, and most important for this session, is that MMS should not limit the search for electron diffusion regions to the location marked with X in all reconnection cartoons. Our simulations predict more numerous and perhaps more easily measurable electron diffusion

  5. Magnetic reconnection in 3D magnetosphere models: magnetic separators and open flux production

    NASA Astrophysics Data System (ADS)

    Glocer, A.; Dorelli, J.; Toth, G.; Komar, C. M.; Cassak, P.

    2014-12-01

    There are multiple competing definitions of magnetic reconnection in 3D (e.g., Hesse and Schindler [1988], Lau and Finn [1990], and Boozer [2002]). In this work we focus on separator reconnection. A magnetic separator can be understood as the 3D analogue of a 2D x line with a guide field, and is defined by the line corresponding to the intersection of the separatrix surfaces associated with the magnetic nulls. A separator in the magnetosphere represents the intersection of four distinct magnetic topologies: solar wind, closed, open connected to the northern hemisphere, and open connected to the southern hemisphere. The integral of the parallel electric field along the separator defines the rate of open flux production, and is one measure of the reconnection rate. We present three methods for locating magnetic separators and apply them to 3D resistive MHD simulations of the Earth's magnetosphere using the BATS-R-US code. The techniques for finding separators and determining the reconnection rate are insensitive to IMF clock angle and can in principle be applied to any magnetospheric model. The present work examines cases of high and low resistivity, for two clock angles. We also examine the separator during Flux Transfer Events (FTEs) and Kelvin-Helmholtz instability.

  6. Localization and propagation of the energy release during 3D kinetic magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Markidis, Stefano; Goldman, Marty; Newman, David

    2013-04-01

    Reconnection is a key processes where energy is released: magnetic field lines break, merge in a new configuration. In the process some of the energy is released. Recent work by Shay and collaborators has pointed out that energy is released far and moving fast away from the reconnection site, at a speed exceeding several times the Alfven speed. We revisit this point, considering the release of energy from reconnection and considering both laminar processes and turbulent reconnection. We analyse the energy budget and the processes of energy transfer via Poynting flux and particle flows. The results are compared with the recent findings by Shay. The effect of the guide field can be very significant at even relatively weak strength, as our recent analysis shows. The effect on the life cycle of energy is considered. The research leading to these results has received funding from the European Commission's Seventh Framework Programme (FP7/2007-2013) under the grant agreement SWIFF (project n° 263340, www.swiff.eu). [1] M. A. Shay, J. F. Drake, J. P. Eastwood, and T. D. Phan, Super-Alfvénic Propagation of Substorm Reconnection Signatures and Poynting Flux, Phys. Rev. Lett. 107, 089901, 2011. [2] M.V. Goldman, G. Lapenta, D. L. Newman, S. Markidis, H. Che, Jet Deflection by Very Weak Guide Fields during Magnetic Reconnection, Physical Review Letters, 107, 135001, 2011.

  7. 3D Hall MHD Reconnection Dynamics in a Strongly Sheared System

    NASA Astrophysics Data System (ADS)

    Huba, J. D.; Rudakov, L. I.

    2002-12-01

    A 3D Hall MHD simulation code (VooDoo) has recently been developed at the Naval Research Laboratory. Recent results have demonstrated that magnetic shock-like structures [Rudakov and Huba, 2002] and a `reconnection wave' [Huba and Rudakov, 2002] can propagate in three dimensional, reversed field plasma layers. In this talk we present preliminary results of a fully 3D magnetic reconnection process in a reversed field plasma that includes a strong guide field, i.e., no magnetic nulls. The initial configuration of the plasma system is as follows. The ambient, reversed magnetic field is in the x-direction with Bx = B0 tanh(y/Ly) where Ly is the scale length of the current sheet. The ambient guide field is in the z-direction with Bz = B0. Perturbation fields δ Bx and δ By are introduced to initiate the reconnection process. This initial configuration is similar to that used in the 2D GEM reconnection study. However, the perturbation fields are localized in the z-direction. We find that the magnetic topology of the system is reconfigured via a process akin to `magnetic flipping' described by Priest and Forbes (1992). A high-density, magnetic flux-rope forms in the center of the plasma sheet. Magnetic flipping occurs between the center of the flux-tube and the boundaries in the x-direction. Associated with this magnetic flipping geometry, the reconnected magnetic field component By reverses sign 3 times in the x-direction, in contrast to only once in the no-guide field case. As in previous Hall MHD reconnection simulation studies, the system evolves asymmetrically along the current. Huba, J.D. and L.I. Rudakov, to be published in Phys. Plasmas, 2002. Priest, E.R. and T.G. Forbes, J. Geophys. Res. 97, 1521, 1992. Rudakov, L.I. and J.D. Huba, Phys. Rev. Lett. 89, 095002, 2002. Research supported by NASA and ONR.

  8. 3D palmprint data fast acquisition and recognition

    NASA Astrophysics Data System (ADS)

    Wang, Xiaoxu; Huang, Shujun; Gao, Nan; Zhang, Zonghua

    2014-11-01

    This paper presents a fast 3D (Three-Dimension) palmprint capturing system and develops an efficient 3D palmprint feature extraction and recognition method. In order to fast acquire accurate 3D shape and texture of palmprint, a DLP projector triggers a CCD camera to realize synchronization. By generating and projecting green fringe pattern images onto the measured palm surface, 3D palmprint data are calculated from the fringe pattern images. The periodic feature vector can be derived from the calculated 3D palmprint data, so undistorted 3D biometrics is obtained. Using the obtained 3D palmprint data, feature matching test have been carried out by Gabor filter, competition rules and the mean curvature. Experimental results on capturing 3D palmprint show that the proposed acquisition method can fast get 3D shape information of palmprint. Some initial experiments on recognition show the proposed method is efficient by using 3D palmprint data.

  9. Magnetic Dissipation in Asymmetric Strong Guide 3D Simulations: Examples of Magnetic Diffusion and Reconnection

    NASA Astrophysics Data System (ADS)

    Scudder, J. D.; Karimabadi, H.; Daughton, W. S.

    2013-12-01

    Interpretations of 2D simulations of magnetic reconnection are greatly simplified by using the flux function, usually the out of plane component of the vector potential. This theoretical device is no longer available when simulations are analyzed in 3-D. We illustrate the results of determining the locale rates of flux slippage in simulations by a technique based on Maxwell's equations. The technique recovers the usual results obtained for the flux function in 2D simulations, but remains viable in 3D simulations where there is no flux function. The method has also been successfully tested for full PIC simulations where reconnection is geometrically forbiddden. While such layers possess measurable flux slippages (diffusion) their level is not as strong as recorded in known 2D PIC reconnection sites using the same methodology. This approach will be used to explore the spatial incidence and strength of flux slippages across a 3D, asymmetric, strong guide field run discussed previously in the literature. Regions of diffusive behavior are illustrated where LHDI has been previously identified out on the separatrices, while much stronger flux slippages, typical of the X-regions of 2D simulations, are shown to occur elsewhere throughout the simulation. These results suggest that reconnection requires sufficiently vigorous flux slippage to be self sustaining, while non-zero flux slippage can and does occur without being at the reconnection site. A cross check of this approach is provided by the mixing ratio of tagged simulation particles of known spatial origin discussed by Daughton et al., 2013 (this meeting); they provide an integral measure of flux slippage up to the present point in the simulation. We will discuss the correlations between our Maxwell based flux slippage rates and the inferred rates of change of this mixing ratio (as recorded in the local fluid frame).

  10. FAST MAGNETIC RECONNECTION AND SPONTANEOUS STOCHASTICITY

    SciTech Connect

    Eyink, Gregory L.; Lazarian, A.; Vishniac, E. T.

    2011-12-10

    Magnetic field lines in astrophysical plasmas are expected to be frozen-in at scales larger than the ion gyroradius. The rapid reconnection of magnetic-flux structures with dimensions vastly larger than the gyroradius requires a breakdown in the standard Alfven flux-freezing law. We attribute this breakdown to ubiquitous MHD plasma turbulence with power-law scaling ranges of velocity and magnetic energy spectra. Lagrangian particle trajectories in such environments become 'spontaneously stochastic', so that infinitely many magnetic field lines are advected to each point and must be averaged to obtain the resultant magnetic field. The relative distance between initial magnetic field lines which arrive at the same final point depends upon the properties of two-particle turbulent dispersion. We develop predictions based on the phenomenological Goldreich and Sridhar theory of strong MHD turbulence and on weak MHD turbulence theory. We recover the predictions of the Lazarian and Vishniac theory for the reconnection rate of large-scale magnetic structures. Lazarian and Vishniac also invoked 'spontaneous stochasticity', but of the field lines rather than of the Lagrangian trajectories. More recent theories of fast magnetic reconnection appeal to microscopic plasma processes that lead to additional terms in the generalized Ohm's law, such as the collisionless Hall term. We estimate quantitatively the effect of such processes on the inertial-range turbulence dynamics and find them to be negligible in most astrophysical environments. For example, the predictions of the Lazarian and Vishniac theory are unchanged in Hall MHD turbulence with an extended inertial range, whenever the ion skin depth {delta}{sub i} is much smaller than the turbulent integral length or injection-scale L{sub i} .

  11. Physical conditions for fast reconnection evolution in space plasmas

    SciTech Connect

    Ugai, M.

    2012-07-15

    The present paper studies physical conditions for fast reconnection mechanism involving slow shocks to evolve spontaneously in space (high-temperature) plasmas. This is fundamental for onset mechanisms of geomagnetic substorms and solar flares. It is demonstrated that reconnection evolution strongly depends on effective resistivity available in space plasmas as well as on dimensions of initial current sheet. If a current sheet is sufficiently thin, fast reconnection spontaneously evolves only when resistivity is locally enhanced around X reconnection point. This is because in space plasmas reconnection flows cause vital current concentration locally around X point. For current-driven anomalous resistivity, the resulting resistivity is automatically localized around X point, so fast reconnection mechanism can be realized. On the other hand, for uniform or Spitzer resistivity, any fast reconnection cannot grow; in particular, Spitzer resistivity is reduced around X point because of Joule heating. Regarding reconnection simulations (either fluid or particle), unless numerical resistivities are made negligibly small, they seriously mask the effects of physical resistivity, leading to a misleading conclusion that reconnection evolution is little influenced by plasma resistivity.

  12. 3D meshes of carbon nanotubes guide functional reconnection of segregated spinal explants.

    PubMed

    Usmani, Sadaf; Aurand, Emily Rose; Medelin, Manuela; Fabbro, Alessandra; Scaini, Denis; Laishram, Jummi; Rosselli, Federica B; Ansuini, Alessio; Zoccolan, Davide; Scarselli, Manuela; De Crescenzi, Maurizio; Bosi, Susanna; Prato, Maurizio; Ballerini, Laura

    2016-07-01

    In modern neuroscience, significant progress in developing structural scaffolds integrated with the brain is provided by the increasing use of nanomaterials. We show that a multiwalled carbon nanotube self-standing framework, consisting of a three-dimensional (3D) mesh of interconnected, conductive, pure carbon nanotubes, can guide the formation of neural webs in vitro where the spontaneous regrowth of neurite bundles is molded into a dense random net. This morphology of the fiber regrowth shaped by the 3D structure supports the successful reconnection of segregated spinal cord segments. We further observed in vivo the adaptability of these 3D devices in a healthy physiological environment. Our study shows that 3D artificial scaffolds may drive local rewiring in vitro and hold great potential for the development of future in vivo interfaces.

  13. 3D meshes of carbon nanotubes guide functional reconnection of segregated spinal explants

    PubMed Central

    Usmani, Sadaf; Aurand, Emily Rose; Medelin, Manuela; Fabbro, Alessandra; Scaini, Denis; Laishram, Jummi; Rosselli, Federica B.; Ansuini, Alessio; Zoccolan, Davide; Scarselli, Manuela; De Crescenzi, Maurizio; Bosi, Susanna; Prato, Maurizio; Ballerini, Laura

    2016-01-01

    In modern neuroscience, significant progress in developing structural scaffolds integrated with the brain is provided by the increasing use of nanomaterials. We show that a multiwalled carbon nanotube self-standing framework, consisting of a three-dimensional (3D) mesh of interconnected, conductive, pure carbon nanotubes, can guide the formation of neural webs in vitro where the spontaneous regrowth of neurite bundles is molded into a dense random net. This morphology of the fiber regrowth shaped by the 3D structure supports the successful reconnection of segregated spinal cord segments. We further observed in vivo the adaptability of these 3D devices in a healthy physiological environment. Our study shows that 3D artificial scaffolds may drive local rewiring in vitro and hold great potential for the development of future in vivo interfaces. PMID:27453939

  14. Measurements of Fast Magnetic Reconnection Driven by Relativistic Electrons

    NASA Astrophysics Data System (ADS)

    Raymond, Anthony; McKelvey, Andrew; Zulick, Calvin; Chuanfei, Dong; Maksimchuk, Anatoly; Thomas, Alexander; Yanovsky, Victor; Krushelnick, Karl; Willingale, Louise; Chykov, Vladimir; Nilson, Phil; Chen, Hui; Williams, Gerald; Bhattacharjee, Amitava; Fox, Will

    2015-11-01

    Magnetic reconnection is a process whereby opposing magnetic field lines are forced together and topologically rearrange, resulting in lower magnetic potential energy and in corresponding plasma heating. Such occurrences are ubiquitous in astrophysics as well as appearing in laboratory plasmas such as in ICF in the form of instabilities. We report measurements in the domain of ultra-fast, ultra-intense lasers, in which the mechanism responsible follows from radially expanding surface electrons with v ~ c . Results are compared from two laser facilities (HERCULES and Omega EP), both of which produced two relativistic intensity pulses focused within close proximity onto copper foils. A spherical X-ray crystal was used to image the Kα radiation induced by electron currents, revealing the midplane diffusion region wherein electrons are accelerated into the target by the electric field generated during reconnection. The characteristics of this signal are studied as a function of the focal spot separation, laser energy, and pulse duration. The results are then compared to 3D PIC simulations.

  15. Relaxation and merging flux ropes and 3D effects in the Reconnection Scaling Experiment at LANL

    NASA Astrophysics Data System (ADS)

    Intrator, T.; Furno, I.; Light, A.; Madziwa-Nussinov, T.; Lapenta, G.; Ricci, P.; Hemsing, E.

    2005-12-01

    Magnetic structures are embedded in astrophysical, space, solar and laboratory plasmas. The dynamics and relaxation of these plasmas can involve flows, changes in topology, magnetic reconnection, plasma heating, and dissipation of magnetic energy. This complex behavior is intrinsically three-dimensional (3D). Current-carrying magnetic flux ropes are the fundamental building blocks for many of these cases. At Los Alamos National Laboratory, we have an experimental realization of this model. The Reconnection Scaling Experiment (RSX) is a unique facility that can create multiple current-carrying flux ropes in an MHD experiment. Plasma guns are used to inject magnetic helicity into plasma columns. We show 3D structure with camera views, along with magnetic, electric, and particle probe data. Experiments in the presence of a strong guide magnetic field (Bz/Brcxn>10) show the formation of a current sheet and electron heating during the coalescence of two flux ropes. Computed simulations of the interactions of two current ropes are shown of that predict many of the experimental characteristics. A density wave structure that propagates opposite to the current is measured in the current sheet with wavelength and speed that are consistent with a kinetic Alfven wave. The current channels acquire angular momentum and rotate about each other developing helical structures, both individually and jointly. Parallel pressure gradients (a 3D effect) appear to be an important term in the Ohm's Law.

  16. ONSET OF FAST MAGNETIC RECONNECTION IN PARTIALLY IONIZED GASES

    SciTech Connect

    Malyshkin, Leonid M.; Zweibel, Ellen G. E-mail: zweibel@astro.wisc.edu

    2011-10-01

    We consider quasi-stationary two-dimensional magnetic reconnection in a partially ionized incompressible plasma. We find that when the plasma is weakly ionized and the collisions between the ions and the neutral particles are significant, the transition to fast collisionless reconnection due to the Hall effect in the generalized Ohm's law is expected to occur at much lower values of the Lundquist number, as compared to a fully ionized plasma case. We estimate that these conditions for fast reconnection are satisfied in molecular clouds and in protostellar disks.

  17. Fast Magnetic Reconnection: Bridging Laboratory and Space Plasma Physics

    SciTech Connect

    Bhattacharjee, Amitava

    2012-02-16

    Recent developments in experimental and theoretical studies of magnetic reconnection hold promise for providing solutions to outstanding problems in laboratory and space plasma physics. Examples include sawtooth crashes in tokamaks, substorms in the Earth’s Magnetosphere, eruptive solar flares, and more recently, fast reconnection in laser-produced high energy density plasmas. In each of these examples, a common and long-standing challenge has been to explain why fast reconnection proceeds rapidly from a relatively quiescent state. In this talk, we demonstrate the advantages of viewing these problems and their solutions from a common perspective. We focus on some recent, surprising discoveries regarding the role of secondary plasmoid instabilities of thin current sheets. Nonlinearly, these instabilities lead to fast reconnection rates that are very weakly dependent on the Lundquist number of the plasma.

  18. Steady state reconnection at a single 3D magnetic null point

    NASA Astrophysics Data System (ADS)

    Galsgaard, K.; Pontin, D. I.

    2011-05-01

    Aims: We systematically stress a rotationally symmetric 3D magnetic null point by advecting the opposite footpoints of the spine axis in opposite directions. This stress eventually concentrates in the vicinity of the null point, thereby forming a local current sheet through which magnetic reconnection takes place. The aim is to look for a steady state evolution of the current sheet dynamics, which may provide scaling relations for various characteristic parameters of the system. Methods: The evolution is followed by solving numerically the non-ideal MHD equations in a Cartesian domain. The null point is embedded in an initially constant density and temperature plasma. Results: It is shown that a quasi-steady reconnection process can be set up at a 3D null by continuous shear driving. It appears that a true steady state is unlikely to be realised because the current layer tends to grow until it is restricted by the geometry of the computational domain and the imposed driving profile. However, ratios between characteristic quantities clearly settle after some time to stable values, so that the evolution is quasi-steady. The experiments show a number of scaling relations, but they do not provide a clear consensus for extending to lower magnetic resistivity or faster driving velocities. More investigations are needed to fully clarify the properties of current sheets at magnetic null points.

  19. Calibrating MMS Electron Drift Instrument (EDI) Ambient Electron Flux Measurements and Characterizing 3D Electric Field Signatures of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Shuster, J. R.; Torbert, R. B.; Vaith, H.; Argall, M. R.; Li, G.; Chen, L. J.; Ergun, R. E.; Lindqvist, P. A.; Marklund, G. T.; Khotyaintsev, Y. V.; Russell, C. T.; Magnes, W.; Le Contel, O.; Pollock, C. J.; Giles, B. L.

    2015-12-01

    The electron drift instruments (EDIs) onboard each MMS spacecraft are designed with large geometric factors (~0.01cm2 str) to facilitate detection of weak (~100 nA) electron beams fired and received by the two gun-detector units (GDUs) when EDI is in its "electric field mode" to determine the local electric and magnetic fields. A consequence of the large geometric factor is that "ambient mode" electron flux measurements (500 eV electrons having 0°, 90°, or 180° pitch angle) can vary depending on the orientation of the EDI instrument with respect to the magnetic field, a nonphysical effect that requires a correction. Here, we present determinations of the θ- and ø-dependent correction factors for the eight EDI GDUs, where θ (ø) is the polar (azimuthal) angle between the GDU symmetry axis and the local magnetic field direction, and compare the corrected fluxes with those measured by the fast plasma instrument (FPI). Using these corrected, high time resolution (~1,000 samples per second) ambient electron fluxes, combined with the unprecedentedly high resolution 3D electric field measurements taken by the spin-plane and axial double probes (SDP and ADP), we are equipped to accurately detect electron-scale current layers and electric field waves associated with the non-Maxwellian (anisotropic and agyrotropic) particle distribution functions predicted to exist in the reconnection diffusion region. We compare initial observations of the diffusion region with distributions and wave analysis from PIC simulations of asymmetric reconnection applicable for modeling reconnection at the Earth's magnetopause, where MMS will begin Science Phase 1 as of September 1, 2015.

  20. 3D fast wavelet network model-assisted 3D face recognition

    NASA Astrophysics Data System (ADS)

    Said, Salwa; Jemai, Olfa; Zaied, Mourad; Ben Amar, Chokri

    2015-12-01

    In last years, the emergence of 3D shape in face recognition is due to its robustness to pose and illumination changes. These attractive benefits are not all the challenges to achieve satisfactory recognition rate. Other challenges such as facial expressions and computing time of matching algorithms remain to be explored. In this context, we propose our 3D face recognition approach using 3D wavelet networks. Our approach contains two stages: learning stage and recognition stage. For the training we propose a novel algorithm based on 3D fast wavelet transform. From 3D coordinates of the face (x,y,z), we proceed to voxelization to get a 3D volume which will be decomposed by 3D fast wavelet transform and modeled after that with a wavelet network, then their associated weights are considered as vector features to represent each training face . For the recognition stage, an unknown identity face is projected on all the training WN to obtain a new vector features after every projection. A similarity score is computed between the old and the obtained vector features. To show the efficiency of our approach, experimental results were performed on all the FRGC v.2 benchmark.

  1. 3D Model of Slip-Running Reconnection on Solar Sigmoidal Regions

    NASA Astrophysics Data System (ADS)

    Douglas, B.; Savcheva, A. S.; DeLuca, E. E.

    2015-12-01

    The structure of energy storing magnetic field lines on the Sun is very twisted and contorted. Some of the twist arises from photospheric foot point motion and some is due to currents carried into the corona as fields emerge. The stability of a region depends on both the energy stored (so-called "free" energy) and on the structure of the surrounding nearly potential fields. Free energy is usually contained in these S-shaped regions called sigmoids on the solar corona. The only way to reach lower energy state is to release this free energy, by changing its connectivity. This change in connectivity leads to flares and coronal mass ejections (CMEs) that can affect environments of nearby planets. For this project, we focus on a special kind of connectivity change called slip-running reconnection to create 3D numerical models of flare-producing magnetic fields. By comparing these numerical models to observational data from Atmospheric Imaging Assembly (AIA), we will be able to better explain the evolution of sigmoidal flares from active regions. We are studying a flare from Dudik et al 2014 paper (2012 July 12), and a flare from 2015 June 14. Using the Coronal Modeling System (CMS) software, we read the photospheric magnetogram for the specified date and time, compute the potential field, setup the 3D flux rope path, and then relax this flux rope over 60,000 iterations to create a nonlinear force-free field (NLFFF). Using these relaxed models we find the best-fit loops surrounding the flux rope. We then compare these models to the observations in AIA. We compare the magnetic field structure in our models with the observed slipping. For regions near our inserted flux rope, our models successfully correlate with this observation. Further modeling is required, but these initial results suggest that NLFFF modeling may be able to capture realistic 3-D magnetic structures associated with slipping reconnection.

  2. Increased Speed: 3D Silicon Sensors. Fast Current Amplifiers

    SciTech Connect

    Parker, Sherwood; Kok, Angela; Kenney, Christopher; Jarron, Pierre; Hasi, Jasmine; Despeisse, Matthieu; Da Via, Cinzia; Anelli, Giovanni; /CERN

    2012-05-07

    The authors describe techniques to make fast, sub-nanosecond time resolution solid-state detector systems using sensors with 3D electrodes, current amplifiers, constant-fraction comparators or fast wave-form recorders, and some of the next steps to reach still faster results.

  3. Particle energization in 3D magnetic reconnection of relativistic pair plasmas

    SciTech Connect

    Liu Wei; Yin Lin; Albright, B. J.; Bowers, K. J.; Liang, Edison P.; Li Hui

    2011-05-15

    We present large scale 3D particle-in-cell simulations to examine particle energization in magnetic reconnection of relativistic electron-positron (pair) plasmas. The initial configuration is set up as a relativistic Harris equilibrium without a guide field. These simulations are large enough to accommodate a sufficient number of tearing and kink modes. Contrary to the non-relativistic limit, the linear tearing instability is faster than the linear kink instability, at least in our specific parameters. We find that the magnetic energy dissipation is first facilitated by the tearing instability and followed by the secondary kink instability. Particles are mostly energized inside the magnetic islands during the tearing stage due to the spatially varying electric fields produced by the outflows from reconnection. Secondary kink instability leads to additional particle acceleration. Accelerated particles are, however, observed to be thermalized quickly. The large amplitude of the vertical magnetic field resulting from the tearing modes by the secondary kink modes further help thermalizing the non-thermal particles generated from the secondary kink instability. Implications of these results for astrophysics are briefly discussed.

  4. Observation of Magnetic Reconnection at a 3D Null Point Associated with a Solar Eruption

    NASA Astrophysics Data System (ADS)

    Sun, J. Q.; Zhang, J.; Yang, K.; Cheng, X.; Ding, M. D.

    2016-10-01

    Magnetic null has long been recognized as a special structure serving as a preferential site for magnetic reconnection (MR). However, the direct observational study of MR at null-points is largely lacking. Here, we show the observations of MR around a magnetic null associated with an eruption that resulted in an M1.7 flare and a coronal mass ejection. The Geostationary Operational Environmental Satellites X-ray profile of the flare exhibited two peaks at ∼02:23 UT and ∼02:40 UT on 2012 November 8, respectively. Based on the imaging observations, we find that the first and also primary X-ray peak was originated from MR in the current sheet (CS) underneath the erupting magnetic flux rope (MFR). On the other hand, the second and also weaker X-ray peak was caused by MR around a null point located above the pre-eruption MFR. The interaction of the null point and the erupting MFR can be described as a two-step process. During the first step, the erupting and fast expanding MFR passed through the null point, resulting in a significant displacement of the magnetic field surrounding the null. During the second step, the displaced magnetic field started to move back, resulting in a converging inflow and subsequently the MR around the null. The null-point reconnection is a different process from the current sheet reconnection in this flare; the latter is the cause of the main peak of the flare, while the former is the cause of the secondary peak of the flare and the conspicuous high-lying cusp structure.

  5. Trigger of Fast Reconnection via Collapsing Current Sheets

    NASA Astrophysics Data System (ADS)

    Tenerani, A.; Velli, M.; Rappazzo, A. F.; Pucci, F.

    2015-12-01

    It has been widely believed that reconnection is the underlying mechanism of many explosive processes observed both in astrophysical and laboratory plasmas. However, both the questions of how magnetic reconnection is triggered in high Lundquist (S) and Reynolds (R) number plasmas, and how it can then occur on fast, ideal, time-scales remain open. Indeed, it has been argued that fast reconnection rates could be achieved once kinetic scales are reached, or, alternatively, by the onset of the so-called plasmoid instability within Sweet-Parker current sheets. However, it has been shown recently that a tearing mode instability (the "ideal tearing") can grow on an ideal, i.e., S-independent, timescale once the width a of a current sheet becomes thin enough with respect to its macroscopic length L, a/L ~ S-1/3. This suggests that current sheet thinning down to such a threshold aspect ratio —much larger, for S>>1, than the Sweet-Parker one that scales as a/L ~ S-1/2— might provide the trigger for fast reconnection even within the fluid plasma framework. Here we discuss the transition to fast reconnection by studying with visco-resistive MHD simulations the onset and evolution of the tearing instability within a single collapsing current sheet. We indeed show that the transition to a fast tearing mode instability takes place when an inverse aspect ratio of the order of the threshold a/L ~ S-1/3 is reached, and that the secondary current sheets forming nonlinearly become the source of a succession of recursive tearing instabilities. The latter is reminiscent of the fractal reconnection model of flares, which we modify in the light of the "ideal tearing" scenario.

  6. Simulation of the 3-D Evolution of Electron Scale Magnetic Reconnection - Motivated by Laboratory Experiments Predictions for MMS

    NASA Astrophysics Data System (ADS)

    Buechner, J.; Jain, N.; Sharma, A.

    2013-12-01

    The four s/c of the Magnetospheric Multiscale (MMS) mission, to be launched in 2014, will use the Earth's magnetosphere as a laboratory to study the microphysics of three fundamental plasma processes. One of them is magnetic reconnection, an essentially multi-scale process. While laboratory experiments and past theoretical investigations have shown that important processes necessary to understand magnetic reconnection take place at electron scales the MMS mission for the first time will be able to resolve these scales by in space observations. For the measurement strategy of MMS it is important to make specific predictions of the behavior of current sheets with a thickness of the order of the electron skin depth which play an important role in the evolution of collisionless magnetic reconnection. Since these processes are highly nonlinear and non-local numerical simulation is needed to specify the current sheet evolution. Here we present new results about the nonlinear evolution of electron-scale current sheets starting from the linear stage and using 3-D electron-magnetohydrodynamic (EMHD) simulations. The growth rates of the simulated instabilities compared well with the growth rates obtained from linear theory. Mechanisms and conditions of the formation of flux ropes and of current filamentation will be discussed in comparison with the results of fully kinetic simulations. In 3D the X- and O-point configurations of the magnetic field formed in reconnection planes alternate along the out-of-reconnection-plane direction with the wavelength of the unstable mode. In the presence of multiple reconnection sites, the out-of-plane magnetic field can develop nested structure of quadrupoles in reconnection planes, similar to the 2-D case, but now with variations in the out-of-plane direction. The structures of the electron flow and magnetic field in 3-D simulations will be compared with those in 2-D simulations to discriminate the essentially 3D features. We also discuss

  7. PSH3D fast Poisson solver for petascale DNS

    NASA Astrophysics Data System (ADS)

    Adams, Darren; Dodd, Michael; Ferrante, Antonino

    2016-11-01

    Direct numerical simulation (DNS) of high Reynolds number, Re >= O (105) , turbulent flows requires computational meshes >= O (1012) grid points, and, thus, the use of petascale supercomputers. DNS often requires the solution of a Helmholtz (or Poisson) equation for pressure, which constitutes the bottleneck of the solver. We have developed a parallel solver of the Helmholtz equation in 3D, PSH3D. The numerical method underlying PSH3D combines a parallel 2D Fast Fourier transform in two spatial directions, and a parallel linear solver in the third direction. For computational meshes up to 81923 grid points, our numerical results show that PSH3D scales up to at least 262k cores of Cray XT5 (Blue Waters). PSH3D has a peak performance 6 × faster than 3D FFT-based methods when used with the 'partial-global' optimization, and for a 81923 mesh solves the Poisson equation in 1 sec using 128k cores. Also, we have verified that the use of PSH3D with the 'partial-global' optimization in our DNS solver does not reduce the accuracy of the numerical solution of the incompressible Navier-Stokes equations.

  8. Three-dimensional two-fluid investigation of 3D-localized magnetic reconnection and its relation to whistler waves

    NASA Astrophysics Data System (ADS)

    Yoon, Young Dae; Bellan, Paul M.

    2016-10-01

    A full three-dimensional computer code was developed in order to simulate a 3D-localized magnetic reconnection. We assume an incompressible two-fluid regime where the ions are stationary, and electron inertia and Hall effects are present. We solve a single dimensionless differential equation for perturbed magnetic fields with arbitrary background fields. The code has successfully reproduced both experimental and analytic solutions to resonance and Gendrin mode whistler waves in a uniform background field. The code was then modified to model 3D-localized magnetic reconnection as a 3D-localized perturbation on a hyperbolic-tangent background field. Three-dimensional properties that are asymmetric in the out-of-plane direction have been observed. These properties pertained to magnetic field lines, electron currents and their convection. Helicity and energy have also been examined, as well as the addition of a guide field.

  9. 3D-spectral CDIs: a fast alternative to 3D inversion?

    NASA Astrophysics Data System (ADS)

    Macnae, James

    2015-09-01

    Virtually all airborne electromagnetic (AEM) data is interpreted using stitched 1D conductivity sections, derived from constrained inversion or fast but fairly accurate approximations. A small subset of this AEM data recently has been inverted using either block 3D models or thin plates, which processes have limitations in terms of cost and accuracy, and the results are in general strongly biased by the choice of starting models. Recent developments in spectral modelling have allowed fast 3D approximations of the EM response of both vortex induction and current gathering for simple geological target geometries. Fitting these spectral responses to AEM data should be sufficient to accurately locate current systems within the ground, and the behaviour of these local current systems can in theory approximately define a conductivity structure in 3D. This paper describes the results of initial testing of the algorithm in fitting vortex induction in a small target at the Forrestania test range, Western Australia, using results from a versatile time-domain electromagnetic (VTEM)-Max survey.

  10. Connecting Global Measures of 3D Magnetic Reconnection to Local Kinetic Physics

    SciTech Connect

    Daughton, William Scott

    2015-07-16

    After giving the motivation for the work, slides present the topic under the following headings: Description of LAPD experiment; Actual simulation setup; Simple kinetic theory of ined-tied tearing; Diagnostics to characterizing 3D reconnection; Example #1 - short-tied system; and Example #2 - long line-tied system. Colorful simulations are shown for quasipotential vs field line exponentiation, field line integrated Ohms Law, and correlation with agyrotopy & energy conversion for example #1; and evolution of current density for largest case, field exponentiation vs quasi-potential, and time evolution of magnetic field lines for example #2. To satisfy line-tied boundary conditions, there is need for superposition of oblique modes--the simple two-mode approximation works surprisingly well. For force-free layers with bg >1, the fastest growing periodic modes are oblique with kxλ ~0.5. This implies a minimum length of Ly > 2πλbg. There are strong correlations between σ → Ξ → A0e (observable with spacecraft). Electron pressure tensor is the dominant non-ideal term.

  11. Fast Galerkin BEM for 3D Potential Theory

    SciTech Connect

    Nintcheu Fata, Sylvain

    2008-01-01

    This paper is concerned with the development of a fast spectral method for solving direct and indirect boundary integral equations in 3D-potential theory. Based on a Galerkin approximation and the Fast Fourier Transform, the proposed method is a generalization of the precorrected-FFT technique to handle not only single-layer potentials but also double-layer potentials and higher-order basis functions. Numerical examples utilizing piecewise linear shape functions are presented to illustrate the performance of the method.

  12. A new fast reconnection model in a collisionless regime

    SciTech Connect

    Tsiklauri, David

    2008-11-15

    Based on the first principles [i.e., (i) by balancing the magnetic field advection with the term containing electron pressure tensor nongyrotropic components in the generalized Ohm's law; (ii) using the conservation of mass; and (iii) assuming that the weak magnetic field region width, where electron meandering motion supports electron pressure tensor off-diagonal (nongyrotropic) components, is of the order of electron Larmor radius] a simple model of magnetic reconnection in a collisionless regime is formulated. The model is general, resembling its collisional Sweet-Parker analog in that it is not specific to any initial configuration, e.g., Harris-type tearing unstable current sheet, X-point collapse or otherwise. In addition to its importance from the fundamental point of view, the collisionless reconnection model offers a much faster reconnection rate [M{sub c{sup '}}{sub less}=(c/{omega}{sub pe}){sup 2}/(r{sub L,e}L)] than Sweet-Parker's classical one (M{sub sp}=S{sup -1/2}). The width of the diffusion region (current sheet) in the collisionless regime is found to be {delta}{sub c{sup '}}{sub less}=(c/{omega}{sub pe}){sup 2}/r{sub L,e}, which is independent of the global reconnection scale L and is only prescribed by microphysics (electron inertial length, c/{omega}{sub pe}, and electron Larmor radius, r{sub L,e}). Amongst other issues, the fastness of the reconnection rate alleviates, e.g., the problem of interpretation of solar flares by means of reconnection, as for the typical solar coronal parameters the obtained collisionless reconnection time can be a few minutes, as opposed to Sweet-Parker's equivalent value of less than a day. The new theoretical reconnection rate is compared to the Magnetic Reconnection Experiment device experimental data by Yamada et al. [Phys. Plasmas 13, 052119 (2006)] and Ji et al. [Geophys. Res. Lett. 35, 13106 (2008)], and a good agreement is obtained.

  13. a Fast Method for Measuring the Similarity Between 3d Model and 3d Point Cloud

    NASA Astrophysics Data System (ADS)

    Zhang, Zongliang; Li, Jonathan; Li, Xin; Lin, Yangbin; Zhang, Shanxin; Wang, Cheng

    2016-06-01

    This paper proposes a fast method for measuring the partial Similarity between 3D Model and 3D point Cloud (SimMC). It is crucial to measure SimMC for many point cloud-related applications such as 3D object retrieval and inverse procedural modelling. In our proposed method, the surface area of model and the Distance from Model to point Cloud (DistMC) are exploited as measurements to calculate SimMC. Here, DistMC is defined as the weighted distance of the distances between points sampled from model and point cloud. Similarly, Distance from point Cloud to Model (DistCM) is defined as the average distance of the distances between points in point cloud and model. In order to reduce huge computational burdens brought by calculation of DistCM in some traditional methods, we define SimMC as the ratio of weighted surface area of model to DistMC. Compared to those traditional SimMC measuring methods that are only able to measure global similarity, our method is capable of measuring partial similarity by employing distance-weighted strategy. Moreover, our method is able to be faster than other partial similarity assessment methods. We demonstrate the superiority of our method both on synthetic data and laser scanning data.

  14. Fast magnetic reconnection due to anisotropic electron pressure

    SciTech Connect

    Cassak, P. A.; Baylor, R. N.; Fermo, R. L.; Beidler, M. T.; Shay, M. A.; Swisdak, M.; Drake, J. F.; Karimabadi, H.

    2015-02-15

    A new regime of fast magnetic reconnection with an out-of-plane (guide) magnetic field is reported in which the key role is played by an electron pressure anisotropy described by the Chew-Goldberger-Low gyrotropic equations of state in the generalized Ohm's law, which even dominates the Hall term. A description of the physical cause of this behavior is provided and two-dimensional fluid simulations are used to confirm the results. The electron pressure anisotropy causes the out-of-plane magnetic field to develop a quadrupole structure of opposite polarity to the Hall magnetic field and gives rise to dispersive waves. In addition to being important for understanding what causes reconnection to be fast, this mechanism should dominate in plasmas with low plasma beta and a high in-plane plasma beta with electron temperature comparable to or larger than ion temperature, so it could be relevant in the solar wind and some tokamaks.

  15. A flexible fast 3D profilometry based on modulation measurement

    NASA Astrophysics Data System (ADS)

    Dou, Yunfu; Su, Xianyu; Chen, Yanfei; Wang, Ying

    2011-03-01

    This paper proposes a flexible fast profilometry based on modulation measurement. Two orthogonal gratings through a beam splitter are vertically projected on an object surface, and the measured object is placed between the imaging planes of the two gratings. Then the image of the object surface modulated by the orthogonal gratings can be obtained by a CCD camera in the same direction as the grating projection. This image is processed by the operations consisting of performing the Fourier transform, spatial frequency filtering and inverse Fourier transform. Using the modulation distributions of two grating patterns, we can reconstruct the 3D shape of the object. In the measurement process, we only need to capture one fringe pattern, so it is faster than the MMP and remains the advantages of it. In the article, the principle of this method, the setup of the measurement system, some simulations and primary experiment results are given. The simulative and experimental result proves it can restore the 3D shape of the complex object fast and comparatively accurate. Because only one fringe pattern is needed in the testing, our method has a promising extensive application prospect in real-time acquiring and dynamic measurement of 3D data of complex objects.

  16. New models for fast steady state magnetic reconnection

    NASA Technical Reports Server (NTRS)

    Priest, E. R.; Forbes, T. G.

    1986-01-01

    A new unified family of models for incompressible, steady-state magnetic reconnection in a finite region is presented. The models are obtained by expanding in powers of the Alfven Mach number and may be used to elucidate some of the puzzling properties of numerical experiments on reconnection which are not present in the classical models. The conditions imposed on the inflow boundary of the finite region determine which member of the family occurs. Petscheklien and Sonnerup like solutions are particular members. The Sonneruplike regime is a special case of a weak slow mode expansion in the inflow region, and it separates two classes of members with reversed currents. The Petscheklike regime is a singular case of a weak fast mode expansion, and it separates the hybrid regime from a regime of slow mode compressions. Care should be taken in deciding which type of reconnection is operating in a numerical experiment. Indeed, no experiment to date has used boundary conditions appropriate for demonstrating steady state Petschek reconnection.

  17. Fast wave current drive antenna performance on D3-D

    NASA Astrophysics Data System (ADS)

    Mayberry, M. J.; Pinsker, R. I.; Petty, C. C.; Chiu, S. C.; Jackson, G. L.; Lippmann, S. I.; Prater, R.; Porkolab, M.

    1991-10-01

    Fast wave current drive (FWCD) experiments at 60 MHz are being performed on the D3-D tokamak for the first time in high electron temperature, high (beta) target plasmas. A four-element phased-array antenna is used to launch a directional wave spectrum with the peak n(sub parallel) value (approximately = 7) optimized for strong single-pass electron absorption due to electron Landau damping. For this experiment, high power FW injection (2 MW) must be accomplished without voltage breakdown in the transmission lines or antenna, and without significant impurity influx. In addition, there is the technological challenge of impedance matching a four-element antenna while maintaining equal currents and the correct phasing (90 degrees) in each of the straps for a directional spectrum. We describe the performance of the D3-D FWCD antenna during initial FW electron heating and current drive experiments in terms of these requirements.

  18. Fast Rotation Search with Stereographic Projections for 3D Registration.

    PubMed

    Parra Bustos, Alvaro; Chin, Tat-Jun; Eriksson, Anders; Li, Hongdong; Suter, David

    2016-11-01

    Registering two 3D point clouds involves estimating the rigid transform that brings the two point clouds into alignment. Recently there has been a surge of interest in using branch-and-bound (BnB) optimisation for point cloud registration. While BnB guarantees globally optimal solutions, it is usually too slow to be practical. A fundamental source of difficulty lies in the search for the rotational parameters. In this work, first by assuming that the translation is known, we focus on constructing a fast rotation search algorithm. With respect to an inherently robust geometric matching criterion, we propose a novel bounding function for BnB that is provably tighter than previously proposed bounds. Further, we also propose a fast algorithm to evaluate our bounding function. Our idea is based on using stereographic projections to precompute and index all possible point matches in spatial R-trees for rapid evaluations. The result is a fast and globally optimal rotation search algorithm. To conduct full 3D registration, we co-optimise the translation by embedding our rotation search kernel in a nested BnB algorithm. Since the inner rotation search is very efficient, the overall 6DOF optimisation is speeded up significantly without losing global optimality. On various challenging point clouds, including those taken out of lab settings, our approach demonstrates superior efficiency.

  19. 3D magnetic field configuration of small-scale reconnection events in the solar plasma atmosphere

    NASA Astrophysics Data System (ADS)

    Shimizu, T.

    2015-10-01

    The outer solar atmosphere, i.e., the corona and the chromosphere, is replete with small energy-release events, which are accompanied by transient brightening and jet-like ejections. These events are considered to be magnetic reconnection events in the solar plasma, and their dynamics have been studied using recent advanced observations from the Hinode spacecraft and other observatories in space and on the ground. These events occur at different locations in the solar atmosphere and vary in their morphology and amount of the released energy. The magnetic field configurations of these reconnection events are inferred based on observations of magnetic fields at the photospheric level. Observations suggest that these magnetic configurations can be classified into two groups. In the first group, two anti-parallel magnetic fields reconnect to each other, yielding a 2D emerging flux configuration. In the second group, helical or twisted magnetic flux tubes are parallel or at a relative angle to each other. Reconnection can occur only between anti-parallel components of the magnetic flux tubes and may be referred to as component reconnection. The latter configuration type may be more important for the larger class of small-scale reconnection events. The two types of magnetic configurations can be compared to counter-helicity and co-helicity configurations, respectively, in laboratory plasma collision experiments.

  20. 3D magnetic field configuration of small-scale reconnection events in the solar plasma atmosphere

    SciTech Connect

    Shimizu, T.

    2015-10-15

    The outer solar atmosphere, i.e., the corona and the chromosphere, is replete with small energy-release events, which are accompanied by transient brightening and jet-like ejections. These events are considered to be magnetic reconnection events in the solar plasma, and their dynamics have been studied using recent advanced observations from the Hinode spacecraft and other observatories in space and on the ground. These events occur at different locations in the solar atmosphere and vary in their morphology and amount of the released energy. The magnetic field configurations of these reconnection events are inferred based on observations of magnetic fields at the photospheric level. Observations suggest that these magnetic configurations can be classified into two groups. In the first group, two anti-parallel magnetic fields reconnect to each other, yielding a 2D emerging flux configuration. In the second group, helical or twisted magnetic flux tubes are parallel or at a relative angle to each other. Reconnection can occur only between anti-parallel components of the magnetic flux tubes and may be referred to as component reconnection. The latter configuration type may be more important for the larger class of small-scale reconnection events. The two types of magnetic configurations can be compared to counter-helicity and co-helicity configurations, respectively, in laboratory plasma collision experiments.

  1. Locating magnetic reconnection x-lines in 3D PIC simulations

    NASA Astrophysics Data System (ADS)

    Olson, D. K.; Dorelli, J.; Daughton, W. S.; Karimabadi, H.

    2013-12-01

    In a three-dimensional PIC simulation of turbulent magnetic reconnection, a reconnection 'X-line' can be identified as a separator in the magnetic topology. From this x-line, it is possible to compute the reconnection rate by evaluating the line integral of the electric field along the separator. This technique is used in a reconnection simulation of a symmetric Harris sheet driven by inflow at the upstream boundaries with a strong guide field (such that the magnetic field is non-vanishing everywhere and there are no magnetic nulls). The results of this analysis are compared to the General Magnetic Reconnection theory (GMR) [Hesse and Schindler, 1998], showing that in this symmetric case GMR agrees with our topological approach to finding the location of the x-line. The parallel electric field is non-trivial along the entire length of the x-line, however, suggesting that the reconnection diffusion region cannot be identified by local measures of the breakdown of ideal MHD alone. We discuss the implications of these results for NASA's upcoming Magnetospheric Multiscale mission.

  2. 3D Ion and Electron Distribution Function Measurements from the Fast Plasma Investigation on the Magnetospheric Multiscale Mission

    NASA Astrophysics Data System (ADS)

    Giles, B. L.; Pollock, C. J.; Avanov, L. A.; Barrie, A. C.; Burch, J. L.; Chandler, M. O.; Clark, G. B.; Coffey, V. N.; Dickson, C.; Dorelli, J.; Ergun, R. E.; Fuselier, S. A.; Gershman, D. J.; Gliese, U.; Holland, M. P.; Jacques, A. D.; Kreisler, S.; Lavraud, B.; MacDonald, E.; Mauk, B.; Moore, T. E.; Mukai, T.; Nakamura, R.; Paterson, W. R.; Rager, A. C.; Saito, Y.; Salo, C.; Sauvaud, J. A.; Torbert, R. B.; Vinas, A. F.; Yokota, S.

    2015-12-01

    The primary focus of the Magnetospheric Multiscale (MMS) mission, launched in March 2015, is magnetic reconnection and associated processes. Understanding hinges critically on the kinetic physics that allows reconnection to take place. The Fast Plasma Investigation (FPI) provides electron and ion distribution functions at 4.5s cadence and, for select periods of time, at cadences of 30ms for electrons and 150ms for ions. These select time periods are chosen after in situ acquisition based on inspection of the low resolution data. Thus the FPI provides, independent of spacecraft spin rate, the time resolution needed to resolve the small, fast-moving reconnection diffusion regions. The first mission phase focuses on the dayside magnetopause and this presentation is intended to demonstrate the capabilities of FPI to resolve the important spatial scales relevant to the reconnection process. Magnetopause and other boundary crossings will be examined and the phase-space trajectories identified at the tetrahedral satellite locations through analysis of the 3D distribution functions.

  3. Fast rendering scheme for 3D cylindrical ultrasound data

    NASA Astrophysics Data System (ADS)

    Choi, Jung Pill; Ra, Jong Beom

    2000-04-01

    3D ultrasound imaging is an emerging and prospective modality in the ultrasound scanning area. Since 3D ultrasound dat are often acquired by translation or rotation of 2D data acquisition systems, the data can be directly sampled on cylindrical or spherical structured girds rather tan on rectilinear grids. However, visualization of cylindrical or spherical data is more complex than that of rectilinear grids. Therefore, conventional rendering methods resample the grids into rectilinear grids and visualize the resampled rectilinear dat. However, resampling introduces an undesired resolution loss. In this paper a direct rendering scheme of cylindrical ultrasound data is considered. Even though cell sin cylindrical grids have different sizes, they are very similar in shape and contain some regularity. We use this similarity and regularity of cells to reduce rendering time in a projection-based rendering method. To achieve high sped rendering, we prose a simple projection ordering method and a fast projection method using a common edge table. And also, to produce good rendering results, an efficient bilinear interpolation scheme is prosed for the hexahedral projection. In this scheme, since weighting coefficients are calculated in the image plane, we can avoid calculating crossing point sin the object space. Based on the proposed techniques above, we can produce high resolution rendered images directly form a cylindrical 3D ultrasound data set.

  4. A fast scanning probe for D3-D

    NASA Astrophysics Data System (ADS)

    Watkins, J. G.; Salmonson, J.; Doerner, R.; Lehmer, R.; Moyer, R.; Schmitz, L.; Hill, D. N.

    A fast reciprocating probe was developed for D3-D which can penetrate the separatrix during H - mode with up to 5MW of NBI heating. The probe was designed to carry various sensor tips into the scrape-off layer at a velocity of 3 m/sec and dwell motionless for a programmed period of time. The driving force is provided by a pneumatic cylinder charged with helium to facilitate greater mass flow. The first series of experiments were done using a Langmuir probe head with 5 graphite tips to measure radial profiles of n(sub e), T(sub e), phi(sub f), (n tilde)(sub e), and (phi tilde)(sub f). The amplitude and phase of the fluctuating quantities are measured by using specially constructed vacuum compatible 5 kV coaxial transmission lines which allow us to extend the measurements into the MHz range. TTZ ceramic bearings and fast stroke bellows were also specially designed for the D3-D probe. Initial measurements will be presented.

  5. Models of coronal heating, turbulence and fast reconnection

    NASA Astrophysics Data System (ADS)

    Velli, M.; Pucci, F.; Rappazzo, F.; Tenerani, A.

    2015-04-01

    Coronal heating is at the origin of the EUV and X-ray emission and mass loss from the sun and many other stars. While different scenarios have been proposed to explain the heating of magnetically confined and open regions of the corona, they must all rely on the transfer, storage and dissipation of the abundant energy present in photospheric motions, which, coupled to magnetic fields, give rise to the complex phenomenology seen at the chromosphere and transition region (i.e. spicules, jets, 'tornadoes'). Here we discuss models and numerical simulations which rely on magnetic fields and electric currents both for energy transfer and for storage in the corona. We will revisit the sources and frequency spectrum of kinetic and electromagnetic energies, the role of boundary conditions, and the routes to small scales required for effective dissipation. Because reconnection in current sheets has been, and still is, one of the most important processes for coronal heating, we will also discuss recent aspects concerning the triggering of reconnection instabilities and the transition to fast reconnection.

  6. Models of coronal heating, turbulence and fast reconnection.

    PubMed

    Velli, M; Pucci, F; Rappazzo, F; Tenerani, A

    2015-05-28

    Coronal heating is at the origin of the EUV and X-ray emission and mass loss from the sun and many other stars. While different scenarios have been proposed to explain the heating of magnetically confined and open regions of the corona, they must all rely on the transfer, storage and dissipation of the abundant energy present in photospheric motions, which, coupled to magnetic fields, give rise to the complex phenomenology seen at the chromosphere and transition region (i.e. spicules, jets, 'tornadoes'). Here we discuss models and numerical simulations which rely on magnetic fields and electric currents both for energy transfer and for storage in the corona. We will revisit the sources and frequency spectrum of kinetic and electromagnetic energies, the role of boundary conditions, and the routes to small scales required for effective dissipation. Because reconnection in current sheets has been, and still is, one of the most important processes for coronal heating, we will also discuss recent aspects concerning the triggering of reconnection instabilities and the transition to fast reconnection.

  7. Global Extended MHD Studies of Fast Magnetic Reconnection

    SciTech Connect

    Breslau J.A.; Jardin, S.C.

    2002-09-18

    Recent experimental and theoretical results have led to two lines of thought regarding the physical processes underlying fast magnetic reconnection. One is based on the traditional Sweet-Parker model but replaces the Spitzer resistivity with an enhanced resistivity caused by electron scattering by ion acoustic turbulence. The other includes the finite gyroradius effects that enter Ohm's law through the Hall and electron pressure gradient terms. A 2-D numerical study, conducted with a new implicit parallel two-fluid code, has helped to clarify the similarities and differences in predictions between these two models and provides some insight into their respective ranges of validity.

  8. Research of Fast 3D Imaging Based on Multiple Mode

    NASA Astrophysics Data System (ADS)

    Chen, Shibing; Yan, Huimin; Ni, Xuxiang; Zhang, Xiuda; Wang, Yu

    2016-02-01

    Three-dimensional (3D) imaging has received increasingly extensive attention and has been widely used currently. Lots of efforts have been put on three-dimensional imaging method and system study, in order to meet fast and high accurate requirement. In this article, we realize a fast and high quality stereo matching algorithm on field programmable gate array (FPGA) using the combination of time-of-flight (TOF) camera and binocular camera. Images captured from the two cameras own a same spatial resolution, letting us use the depth maps taken by the TOF camera to figure initial disparity. Under the constraint of the depth map as the stereo pairs when comes to stereo matching, expected disparity of each pixel is limited within a narrow search range. In the meanwhile, using field programmable gate array (FPGA, altera cyclone IV series) concurrent computing we can configure multi core image matching system, thus doing stereo matching on embedded system. The simulation results demonstrate that it can speed up the process of stereo matching and increase matching reliability and stability, realize embedded calculation, expand application range.

  9. Fast human pose estimation using 3D Zernike descriptors

    NASA Astrophysics Data System (ADS)

    Berjón, Daniel; Morán, Francisco

    2012-03-01

    Markerless video-based human pose estimation algorithms face a high-dimensional problem that is frequently broken down into several lower-dimensional ones by estimating the pose of each limb separately. However, in order to do so they need to reliably locate the torso, for which they typically rely on time coherence and tracking algorithms. Their losing track usually results in catastrophic failure of the process, requiring human intervention and thus precluding their usage in real-time applications. We propose a very fast rough pose estimation scheme based on global shape descriptors built on 3D Zernike moments. Using an articulated model that we configure in many poses, a large database of descriptor/pose pairs can be computed off-line. Thus, the only steps that must be done on-line are the extraction of the descriptors for each input volume and a search against the database to get the most likely poses. While the result of such process is not a fine pose estimation, it can be useful to help more sophisticated algorithms to regain track or make more educated guesses when creating new particles in particle-filter-based tracking schemes. We have achieved a performance of about ten fps on a single computer using a database of about one million entries.

  10. Fast reconnection in relativistic plasmas: the magnetohydrodynamics tearing instability revisited

    NASA Astrophysics Data System (ADS)

    Del Zanna, L.; Papini, E.; Landi, S.; Bugli, M.; Bucciantini, N.

    2016-08-01

    Fast reconnection operating in magnetically dominated plasmas is often invoked in models for magnetar giant flares, for magnetic dissipation in pulsar winds, or to explain the gamma-ray flares observed in the Crab nebula; hence, its investigation is of paramount importance in high-energy astrophysics. Here we study, by means of two-dimensional numerical simulations, the linear phase and the subsequent non-linear evolution of the tearing instability within the framework of relativistic resistive magnetohydrodynamics (MHD), as appropriate in situations where the Alfvén velocity approaches the speed of light. It is found that the linear phase of the instability closely matches the analysis in classical MHD, where the growth rate scales with the Lundquist number S as S-1/2, with the only exception of an enhanced inertial term due to the thermal and magnetic energy contributions. In addition, when thin current sheets of inverse aspect ratio scaling as S-1/3 are considered, the so-called ideal tearing regime is retrieved, with modes growing independently of S and extremely fast, on only a few light crossing times of the sheet length. The overall growth of fluctuations is seen to solely depend on the value of the background Alfvén velocity. In the fully non-linear stage, we observe an inverse cascade towards the fundamental mode, with Petschek-type supersonic jets propagating at the external Alfvén speed from the X-point, and a fast reconnection rate at the predicted value {R}˜ (ln S)^{-1}.

  11. Three-dimensional fast magnetic reconnection driven by relativistic ultraintense femtosecond lasers.

    PubMed

    Ping, Y L; Zhong, J Y; Sheng, Z M; Wang, X G; Liu, B; Li, Y T; Yan, X Q; He, X T; Zhang, J; Zhao, G

    2014-03-01

    Three-dimensional fast magnetic reconnection driven by two ultraintense femtosecond laser pulses is investigated by relativistic particle-in-cell simulation, where the two paralleled incident laser beams are shot into a near-critical plasma layer to form a magnetic reconnection configuration in self-generated magnetic fields. A reconnection X point and out-of-plane quadrupole field structures associated with magnetic reconnection are formed. The reconnection rate is found to be faster than that found in previous two-dimensional Hall magnetohydrodynamic simulations and electrostatic turbulence contribution to the reconnection electric field plays an essential role. Both in-plane and out-of-plane electron and ion accelerations up to a few MeV due to the magnetic reconnection process are also obtained.

  12. Fast magnetic reconnection supported by sporadic small-scale Petschek-type shocks

    SciTech Connect

    Shibayama, Takuya Nakabou, Takashi; Kusano, Kanya; Miyoshi, Takahiro; Vekstein, Grigory

    2015-10-15

    Standard magnetohydrodynamic (MHD) theory predicts reconnection rate that is far too slow to account for a wide variety of reconnection events observed in space and laboratory plasmas. Therefore, it was commonly accepted that some non-MHD (kinetic) effects play a crucial role in fast reconnection. A recently renewed interest in simple MHD models is associated with the so-called plasmoid instability of reconnecting current sheets. Although it is now evident that this effect can significantly enhance the rate of reconnection, many details of the underlying multiple-plasmoid process still remain controversial. Here, we report results of a high-resolution computer simulation which demonstrate that fast albeit intermittent magnetic reconnection is sustained by numerous small-scale Petschek-type shocks spontaneously formed in the current sheet due to its plasmoid instability.

  13. Fast 3D multiple fan-beam CT systems

    NASA Astrophysics Data System (ADS)

    Kohlbrenner, Adrian; Haemmerle, Stefan; Laib, Andres; Koller, Bruno; Ruegsegger, Peter

    1999-09-01

    Two fast, CCD-based three-dimensional CT scanners for in vivo applications have been developed. One is designed for small laboratory animals and has a voxel size of 20 micrometer, while the other, having a voxel size of 80 micrometer, is used for human examinations. Both instruments make use of a novel multiple fan-beam technique: radiation from a line-focus X-ray tube is divided into a stack of fan-beams by a 28 micrometer pitch foil collimator. The resulting wedge-shaped X-ray field is the key to the instrument's high scanning speed and allows to position the sample close to the X-ray source, which makes it possible to build compact CT systems. In contrast to cone- beam scanners, the multiple fan-beam scanner relies on standard fan-beam algorithms, thereby eliminating inaccuracies in the reconstruction process. The projections from one single rotation are acquired within 2 min and are subsequently reconstructed into a 1024 X 1024 X 255 voxel array. Hence a single rotation about the sample delivers a 3D image containing a quarter of a billion voxels. Such volumetric images are 6.6 mm in height and can be stacked on top of each other. An area CCD sensor bonded to a fiber-optic light guide acts as a detector. Since no image intensifier, conventional optics or tapers are used throughout the system, the image is virtually distortion free. The scanner's high scanning speed and high resolution at moderately low radiation dose are the basis for reliable time serial measurements and analyses.

  14. Solar Wind Heating as Revealed from the Variation of 3D Ion Velocity Distributions across the Magnetic Reconnection Exhaust Region

    NASA Astrophysics Data System (ADS)

    He, J.

    2015-12-01

    Magnetic reconnection within current sheet has been regarded as one of the crucial dissipation and heating processes of coherent structures in the solar wind turbulence. Counter-streaming of ions is an important phenomenon in the reconnection exhaust region ranged from the ion diffusion region to the extended outflow region. It has been suggested by theoretical and numerical models that the ions are going to be picked up by the ejecting magnetic field and show larger T_perpendicular than T_parallel, if the guide field is strong enough (in other word, the shear angle is relatively low). The pick-up behavior seems to favor the heating of heavy ions with high mass-to-charge ratio, since the high M/Q ions have larger gyro-period/transit-time and tend to be non-adiabatic more easily. The above statements from theoretical models have not been thoroughly testified in the solar wind observations, though the changes in total temperature and 1D reduced velocity distribution function had been studied. Until now, it remains unclear about the difference of full 3D velocity distribution for the proton and helium ions between the upstream and the exhaust regions. Here, we will analyze the plasma measurement data from WIND/3DP to explore and compare the parallel and perpendicular heating effect of different species of ions. As a preliminary result, the proton is found to show bi-directional streams in its velocity distribution in some reconnection exhaust regions. The thermalization of the counter-streaming protons will be presented. The relation between proton T_parallel/T_perpendicular and guide field strength (or shear angle) will be studied. The velocity distributions of helium ions will be illustrated, which shows the difference of heating effect between different M/Q ratios.

  15. Propagation and dispersion of whistler waves generated by fast reconnection onset

    NASA Astrophysics Data System (ADS)

    Singh, Nagendra

    2013-02-01

    The role of whistler mode during the onset of magnetic reconnection (MR) has been widely suggested, but the manifestations of its highly dispersive and anisotropic propagation properties in reconnection events remain largely unclear. Comparing results from a recently developed theoretical model for reconnection in terms of whistler's dispersive behavior with those reported from laboratory experiments on fast spontaneous magnetic reconnection, we demonstrate that the onset of fast reconnection in electron current layers (ECLs) emits whistler wave packets. The time scale of the explosively fast reconnection events are inversely related to the whistler mode frequencies at the lower end of the whistler frequency band. The wave packets in this frequency band have a characteristic angular dispersion, which marks the initial opening of the reconnection exhaust angle. The multidimensional propagation of the whistler for the reconnection with a strong guide magnetic field is investigated, showing that the measured propagation velocities of the reconnection electric field along the guide field in the Versatile Toroidal Facility at MIT quantitatively compare with the group velocities of the whistler wave packets. The whistler mode dispersive properties measured in laboratory experiments without a guide magnetic field in the magnetic reconnection experiments at Princeton also compare well with the theoretically predicted dispersion of the wave packets depending on the ECL width. Fast normalized reconnection rates extending to ˜0.35 at the MR onset in thin ECLs imply whistler wave propagation away from the onset location. We also present evidences for the whistler wave packets being emitted from reconnection diffusion region as seen in simulations and satellite observations.

  16. Fast ion generation and runaway through magnetic reconnection events in MST

    NASA Astrophysics Data System (ADS)

    Kim, Jungha; Anderson, Jay; Capecchi, William; Bonofiglo, Phillip; Sears, Stephanie

    2016-10-01

    Fokker-Planck and full orbit modeling are used to investigate how global reconnection events in MST plasmas generate an anisotropic fast ion distribution. A multi-step process is hypothesized. First, thermal ions are heated by a perpendicular heating mechanism, possibly a stochastic process that relies on turbulent diffusion and strong radial electric fields, or ion cyclotron damping in the tearing-driven turbulent cascade. Second, a small fraction of the heated ions have sufficient speed to develop substantial guiding center drifts that are relatively immune to stochastic magnetic transport. In the RFP, these fast ion drift orbits are favorable to confinement. Finally, these fast ions are accelerated by a parallel inductive electric field (up to 80 V/m) associated with the abruptly changing magnetic equilibrium. This strong impulsive field does not include any magnetic-fluctuation-based contribution as experienced by thermal particles or electrons, which do not run away like fast ions. CQL3D, a Fokker-Planck solver, and RIO, a full orbit tracing code, are used to model this multi-step process that is responsible for anisotropy in fast ion distribution in MST. Work supported by US DOE. Supported by US DOE.

  17. Fast assembling of neuron fragments in serial 3D sections.

    PubMed

    Chen, Hanbo; Iascone, Daniel Maxim; da Costa, Nuno Maçarico; Lein, Ed S; Liu, Tianming; Peng, Hanchuan

    2017-04-01

    Reconstructing neurons from 3D image-stacks of serial sections of thick brain tissue is very time-consuming and often becomes a bottleneck in high-throughput brain mapping projects. We developed NeuronStitcher, a software suite for stitching non-overlapping neuron fragments reconstructed in serial 3D image sections. With its efficient algorithm and user-friendly interface, NeuronStitcher has been used successfully to reconstruct very large and complex human and mouse neurons.

  18. 3D RISM theory with fast reciprocal-space electrostatics

    SciTech Connect

    Heil, Jochen; Kast, Stefan M.

    2015-03-21

    The calculation of electrostatic solute-solvent interactions in 3D RISM (“three-dimensional reference interaction site model”) integral equation theory is recast in a form that allows for a computational treatment analogous to the “particle-mesh Ewald” formalism as used for molecular simulations. In addition, relations that connect 3D RISM correlation functions and interaction potentials with thermodynamic quantities such as the chemical potential and average solute-solvent interaction energy are reformulated in a way that calculations of expensive real-space electrostatic terms on the 3D grid are completely avoided. These methodical enhancements allow for both, a significant speedup particularly for large solute systems and a smoother convergence of predicted thermodynamic quantities with respect to box size, as illustrated for several benchmark systems.

  19. Fast, Automated, 3D Modeling of Building Interiors

    DTIC Science & Technology

    2012-10-30

    of thermographies with laser scanning point clouds [6]. Given the heterogeneous nature of the two modalities, we propose a feature-based approach...extract 2D lines from thermographies , and 3D lines are extracted through segmentation of the point cloud. Feature- matching and the relative pose between... thermographies and point cloud are obtained from an iterative procedure applied to detect and reject outliers; this includes rotation matrix and

  20. Fast vision-based catheter 3D reconstruction.

    PubMed

    Moradi Dalvand, Mohsen; Nahavandi, Saeid; Howe, Robert D

    2016-07-21

    Continuum robots offer better maneuverability and inherent compliance and are well-suited for surgical applications as catheters, where gentle interaction with the environment is desired. However, sensing their shape and tip position is a challenge as traditional sensors can not be employed in the way they are in rigid robotic manipulators. In this paper, a high speed vision-based shape sensing algorithm for real-time 3D reconstruction of continuum robots based on the views of two arbitrary positioned cameras is presented. The algorithm is based on the closed-form analytical solution of the reconstruction of quadratic curves in 3D space from two arbitrary perspective projections. High-speed image processing algorithms are developed for the segmentation and feature extraction from the images. The proposed algorithms are experimentally validated for accuracy by measuring the tip position, length and bending and orientation angles for known circular and elliptical catheter shaped tubes. Sensitivity analysis is also carried out to evaluate the robustness of the algorithm. Experimental results demonstrate good accuracy (maximum errors of  ±0.6 mm and  ±0.5 deg), performance (200 Hz), and robustness (maximum absolute error of 1.74 mm, 3.64 deg for the added noises) of the proposed high speed algorithms.

  1. Fast vision-based catheter 3D reconstruction

    NASA Astrophysics Data System (ADS)

    Moradi Dalvand, Mohsen; Nahavandi, Saeid; Howe, Robert D.

    2016-07-01

    Continuum robots offer better maneuverability and inherent compliance and are well-suited for surgical applications as catheters, where gentle interaction with the environment is desired. However, sensing their shape and tip position is a challenge as traditional sensors can not be employed in the way they are in rigid robotic manipulators. In this paper, a high speed vision-based shape sensing algorithm for real-time 3D reconstruction of continuum robots based on the views of two arbitrary positioned cameras is presented. The algorithm is based on the closed-form analytical solution of the reconstruction of quadratic curves in 3D space from two arbitrary perspective projections. High-speed image processing algorithms are developed for the segmentation and feature extraction from the images. The proposed algorithms are experimentally validated for accuracy by measuring the tip position, length and bending and orientation angles for known circular and elliptical catheter shaped tubes. Sensitivity analysis is also carried out to evaluate the robustness of the algorithm. Experimental results demonstrate good accuracy (maximum errors of  ±0.6 mm and  ±0.5 deg), performance (200 Hz), and robustness (maximum absolute error of 1.74 mm, 3.64 deg for the added noises) of the proposed high speed algorithms.

  2. Fast 3D fluid registration of brain magnetic resonance images

    NASA Astrophysics Data System (ADS)

    Leporé, Natasha; Chou, Yi-Yu; Lopez, Oscar L.; Aizenstein, Howard J.; Becker, James T.; Toga, Arthur W.; Thompson, Paul M.

    2008-03-01

    Fluid registration is widely used in medical imaging to track anatomical changes, to correct image distortions, and to integrate multi-modality data. Fluid mappings guarantee that the template image deforms smoothly into the target, without tearing or folding, even when large deformations are required for accurate matching. Here we implemented an intensity-based fluid registration algorithm, accelerated by using a filter designed by Bro-Nielsen and Gramkow. We validated the algorithm on 2D and 3D geometric phantoms using the mean square difference between the final registered image and target as a measure of the accuracy of the registration. In tests on phantom images with different levels of overlap, varying amounts of Gaussian noise, and different intensity gradients, the fluid method outperformed a more commonly used elastic registration method, both in terms of accuracy and in avoiding topological errors during deformation. We also studied the effect of varying the viscosity coefficients in the viscous fluid equation, to optimize registration accuracy. Finally, we applied the fluid registration algorithm to a dataset of 2D binary corpus callosum images and 3D volumetric brain MRIs from 14 healthy individuals to assess its accuracy and robustness.

  3. Turbulent Reconnection in the Magnetic Reconnection Experiment (MRX)

    NASA Astrophysics Data System (ADS)

    Dorfman, S.; Ji, H.; Yamada, M.; Oz, E.; Yoo, J.; Daughton, W.; Roytershteyn, V.

    2009-11-01

    One of the key open questions in Magnetic Reconnection is the nature of the mechanism that governs the reconnection rate in real astrophysical and laboratory systems. For collisonless plasmas, the Hall effect removes an important bottleneck to fast reconnection as the heavier ions exit the reconnection layer over a broader region [1]. However, the Hall term cannot balance the reconnection electric field at the layer center, and the 2-D, collisionless expression for the electric field due to particle dynamics [2] has been shown to be insufficient in the Magnetic Reconnection Experiment (MRX) [1,3]. Turbulent 3-D effects such as lower hybrid frequency range fluctuations [4] may play an important role in fast reconnection in MRX. These electromagnetic fluctuations tend to be associated with high local currents and a rapid local reconnection rate. The precise relation of these fluctuations and associated 3-D asymmetries to fast reconnection is a topic of active investigations; the most up to date results will be discussed. This work was supported by NDSEG, DOE, NASA, and NSF.[4pt] [1] Y. Ren, et al., Phys. Plasmas 15, 082113 (2008). [2] M. Hesse, et al., Phys. Plasmas, 6:1781 (1999). [3] S. Dorfman, et al., Phys. Plasmas 15, 102107 (2008). [4] H. Ji, et al., Phys.Rev.Lett. 92 (2004) 115001.

  4. Fast Generation of body conforming grids for 3-D

    NASA Technical Reports Server (NTRS)

    Dulikravich, O.

    1980-01-01

    A fast algorithm was developed for accurately generating boundary conforming, three dimensional, consecutively refined, computational grids applicable to arbitrary axial turbomachinery geometry. The method is based on using a single analytic function to generate two dimensional grids on a number of coaxial axisymmetric surfaces positioned between the hub and the shroud. These grids are of the "O" type and are characterized by quasi-orthogonality, geometric periodicity, and an adequate resolution throughout the flowfield. Due to the built in additional nonorthogonal coordinate stretching and shearing, the grid lines leaving the trailing of the blade end at downstream infinity, thus simplifying the numerical treatment of the three dimensional trailing vortex sheet.

  5. Fast 3-d tomographic microwave imaging for breast cancer detection.

    PubMed

    Grzegorczyk, Tomasz M; Meaney, Paul M; Kaufman, Peter A; diFlorio-Alexander, Roberta M; Paulsen, Keith D

    2012-08-01

    Microwave breast imaging (using electromagnetic waves of frequencies around 1 GHz) has mostly remained at the research level for the past decade, gaining little clinical acceptance. The major hurdles limiting patient use are both at the hardware level (challenges in collecting accurate and noncorrupted data) and software level (often plagued by unrealistic reconstruction times in the tens of hours). In this paper we report improvements that address both issues. First, the hardware is able to measure signals down to levels compatible with sub-centimeter image resolution while keeping an exam time under 2 min. Second, the software overcomes the enormous time burden and produces similarly accurate images in less than 20 min. The combination of the new hardware and software allows us to produce and report here the first clinical 3-D microwave tomographic images of the breast. Two clinical examples are selected out of 400+ exams conducted at the Dartmouth Hitchcock Medical Center (Lebanon, NH). The first example demonstrates the potential usefulness of our system for breast cancer screening while the second example focuses on therapy monitoring.

  6. Fast 3D subsurface imaging with stepped-frequency GPR

    NASA Astrophysics Data System (ADS)

    Masarik, Matthew P.; Burns, Joseph; Thelen, Brian T.; Sutter, Lena

    2015-05-01

    This paper investigates an algorithm for forming 3D images of the subsurface using stepped-frequency GPR data. The algorithm is specifically designed for a handheld GPR and therefore accounts for the irregular sampling pattern in the data and the spatially-variant air-ground interface by estimating an effective "ground-plane" and then registering the data to the plane. The algorithm efficiently solves the 4th-order polynomial for the Snell reflection points using a fully vectorized iterative scheme. The forward operator is implemented efficiently using an accelerated nonuniform FFT (Greengard and Lee, 2004); the adjoint operator is implemented efficiently using an interpolation step coupled with an upsampled FFT. The imaging is done as a linearized version of the full inverse problem, which is regularized using a sparsity constraint to reduce sidelobes and therefore improve image localization. Applying an appropriate sparsity constraint, the algorithm is able to eliminate most the surrounding clutter and sidelobes, while still rendering valuable image properties such as shape and size. The algorithm is applied to simulated data, controlled experimental data (made available by Dr. Waymond Scott, Georgia Institute of Technology), and government-provided data with irregular sampling and air-ground interface.

  7. Fast Magnetic Reconnection in the Plasmoid-Dominated Regime

    SciTech Connect

    Uzdensky, D. A.; Loureiro, N. F.; Schekochihin, A. A.

    2010-12-03

    A conceptual model of resistive magnetic reconnection via a stochastic plasmoid chain is proposed. The global reconnection rate is shown to be independent of the Lundquist number. The distribution of fluxes in the plasmoids is shown to be an inverse-square law. It is argued that there is a finite probability of emergence of abnormally large plasmoids, which can disrupt the chain (and may be responsible for observable large abrupt events in solar flares and sawtooth crashes). A criterion for the transition from the resistive magnetohydrodynamic to the collisionless regime is provided.

  8. The Effect of Dissipation Mechanism and Guide Field Strength on X-line Spreading in 3D Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Shepherd, Lucas; Cassak, P.; Drake, J.; Gosling, J.; Phan, T.; Shay, M. A.

    2013-07-01

    In two-ribbon flares, the fact that the ribbons separate in time is considered evidence of magnetic reconnection. However, in addition to the ribbons separating, they can also elongate (as seen in animations of, for example, the Bastille Day flare). The elongation is undoubtedly related to the reconnection spreading in the out-of-plane direction. Indeed, naturally occurring magnetic reconnection generally begins in a spatially localized region and spreads in the direction perpendicular to the reconnection plane as time progresses. For example, it was suggested that X-line spreading is necessary to explain the observation of X-lines extending more than 390 Earth radii (Phan et al., Nature, 404, 848, 2006), and has been seen in reconnection experiments. A sizeable out-of-plane (guide) magnetic field is present at flare sites and in the solar wind. Here, we study the effect of dissipation mechanism and the strength of the guide field has on X-line spreading. We present results from three-dimensional numerical simulations of magnetic reconnection, comparing spreading with the Hall term to spreading with anomalous resistivity. Applications to solar flares and magnetic reconnection in the solar wind will be discussed.

  9. Experimental Verification of the Role of Electron Pressure in Fast Magnetic Reconnection with a Guide Field.

    PubMed

    Fox, W; Sciortino, F; V Stechow, A; Jara-Almonte, J; Yoo, J; Ji, H; Yamada, M

    2017-03-24

    We report detailed laboratory observations of the structure of a reconnection current sheet in a two-fluid plasma regime with a guide magnetic field. We observe and quantitatively analyze the quadrupolar electron pressure variation in the ion-diffusion region, as originally predicted by extended magnetohydrodynamics simulations. The projection of the electron pressure gradient parallel to the magnetic field contributes significantly to balancing the parallel electric field, and the resulting cross-field electron jets in the reconnection layer are diamagnetic in origin. These results demonstrate how parallel and perpendicular force balance are coupled in guide field reconnection and confirm basic theoretical models of the importance of electron pressure gradients for obtaining fast magnetic reconnection.

  10. Experimental Verification of the Role of Electron Pressure in Fast Magnetic Reconnection with a Guide Field

    NASA Astrophysics Data System (ADS)

    Fox, W.; Sciortino, F.; Stechow, A. V.; Jara-Almonte, J.; Yoo, J.; Ji, H.; Yamada, M.

    2017-03-01

    We report detailed laboratory observations of the structure of a reconnection current sheet in a two-fluid plasma regime with a guide magnetic field. We observe and quantitatively analyze the quadrupolar electron pressure variation in the ion-diffusion region, as originally predicted by extended magnetohydrodynamics simulations. The projection of the electron pressure gradient parallel to the magnetic field contributes significantly to balancing the parallel electric field, and the resulting cross-field electron jets in the reconnection layer are diamagnetic in origin. These results demonstrate how parallel and perpendicular force balance are coupled in guide field reconnection and confirm basic theoretical models of the importance of electron pressure gradients for obtaining fast magnetic reconnection.

  11. Spontaneous three-dimensional magnetic reconnection in merging toroidal plasma experiment

    SciTech Connect

    Ii, Toru; Ono, Yasushi

    2013-01-15

    We investigated a new phenomenon of three-dimensional (3D) magnetic reconnection in TS-4 torus plasma merging experiments by directly measuring the 3D structures of the current sheet. Removal of all toroidal asymmetry of the device reveals that a strong external drive of reconnection inflow increases the toroidal asymmetry of the current sheet only during the reconnection. This spontaneous 3D deformation of the current sheet increases the reconnection outflow as well as the reconnection electric field, probably because local compression of the current sheet to a thickness less than the ion gyroradius triggers its strong dissipation of the current sheet, responsible for the onset of 3D reconnection. These mechanisms indicate that the 3D reconnection is a newly observed spontaneous process of fast reconnection.

  12. Fast-response liquid-crystal lens for 3D displays

    NASA Astrophysics Data System (ADS)

    Liu, Yifan; Ren, Hongwen; Xu, Su; Li, Yan; Wu, Shin-Tson

    2014-02-01

    Three-dimensional (3D) display has become an increasingly important technology trend for information display applications. Dozens of different 3D display solutions have been proposed. The autostereoscopic 3D display based on lenticular microlens array is a promising approach, and fast-switching microlens array enables this system to display both 3D and conventional 2D images. Here we report two different fast-response microlens array designs. The first one is a blue phase liquid crystal lens driven by the Pedot: PSS resistive film electrodes. This BPLC lens exhibits several attractive features, such as polarization insensitivity, fast response time, simple driving scheme, and relatively low driving voltage, as compared to other BPLC lens designs. The second lens design has a double-layered structure. The first layer is a polarization dependent polymer microlens array, and the second layer is a thin twisted-nematic (TN) liquid crystal cell. When the TN cell is switched on/off, the traversing light through the polymeric lens array is either focused or defocused, so that 2D/3D images are displayed correspondingly. This lens design has low driving voltage, fast response time, and simple driving scheme. Simulation and experiment demonstrate that the performance of both switchable lenses meet the requirement of 3D display system design.

  13. A fast 3D reconstruction system with a low-cost camera accessory

    NASA Astrophysics Data System (ADS)

    Zhang, Yiwei; Gibson, Graham M.; Hay, Rebecca; Bowman, Richard W.; Padgett, Miles J.; Edgar, Matthew P.

    2015-06-01

    Photometric stereo is a three dimensional (3D) imaging technique that uses multiple 2D images, obtained from a fixed camera perspective, with different illumination directions. Compared to other 3D imaging methods such as geometry modeling and 3D-scanning, it comes with a number of advantages, such as having a simple and efficient reconstruction routine. In this work, we describe a low-cost accessory to a commercial digital single-lens reflex (DSLR) camera system allowing fast reconstruction of 3D objects using photometric stereo. The accessory consists of four white LED lights fixed to the lens of a commercial DSLR camera and a USB programmable controller board to sequentially control the illumination. 3D images are derived for different objects with varying geometric complexity and results are presented, showing a typical height error of <3 mm for a 50 mm sized object.

  14. A fast 3D reconstruction system with a low-cost camera accessory

    PubMed Central

    Zhang, Yiwei; Gibson, Graham M.; Hay, Rebecca; Bowman, Richard W.; Padgett, Miles J.; Edgar, Matthew P.

    2015-01-01

    Photometric stereo is a three dimensional (3D) imaging technique that uses multiple 2D images, obtained from a fixed camera perspective, with different illumination directions. Compared to other 3D imaging methods such as geometry modeling and 3D-scanning, it comes with a number of advantages, such as having a simple and efficient reconstruction routine. In this work, we describe a low-cost accessory to a commercial digital single-lens reflex (DSLR) camera system allowing fast reconstruction of 3D objects using photometric stereo. The accessory consists of four white LED lights fixed to the lens of a commercial DSLR camera and a USB programmable controller board to sequentially control the illumination. 3D images are derived for different objects with varying geometric complexity and results are presented, showing a typical height error of <3 mm for a 50 mm sized object. PMID:26057407

  15. Secondary fast reconnecting instability in the sawtooth crash

    NASA Astrophysics Data System (ADS)

    Del Sarto, Daniele; Ottaviani, Maurizio

    2016-10-01

    We consider magnetic reconnection in thin current sheets with both resistive and electron inertia effects. By analysis of secondary instabilities we show that, when the current sheet is produced by a primary instability of the internal kink type (large Δ'), reconnection proceeds on a time scale much shorter than the primary instability characteristic time. We find that in the purely resistive regime our estimates agree with the numerical results obtained by for the internal kink instability in a cylindrical tokamak. We also find that, in the case of a sawtooth crash, non-collisional physics becomes important above a value of the Lundquist number which scales like S (R /de)12/5 , in terms of the tokamak major radius R and of the electron skin depth de. This value is commonly achieved in present day devices. As collisionality is further reduced, the characteristic rate increases, approaching Alfvenic values when the primary instability approaches the collisionless regime. All these results have been recently discussed in Ref..

  16. 3D FaceCam: a fast and accurate 3D facial imaging device for biometrics applications

    NASA Astrophysics Data System (ADS)

    Geng, Jason; Zhuang, Ping; May, Patrick; Yi, Steven; Tunnell, David

    2004-08-01

    Human faces are fundamentally three-dimensional (3D) objects, and each face has its unique 3D geometric profile. The 3D geometric features of a human face can be used, together with its 2D texture, for rapid and accurate face recognition purposes. Due to the lack of low-cost and robust 3D sensors and effective 3D facial recognition (FR) algorithms, almost all existing FR systems use 2D face images. Genex has developed 3D solutions that overcome the inherent problems in 2D while also addressing limitations in other 3D alternatives. One important aspect of our solution is a unique 3D camera (the 3D FaceCam) that combines multiple imaging sensors within a single compact device to provide instantaneous, ear-to-ear coverage of a human face. This 3D camera uses three high-resolution CCD sensors and a color encoded pattern projection system. The RGB color information from each pixel is used to compute the range data and generate an accurate 3D surface map. The imaging system uses no moving parts and combines multiple 3D views to provide detailed and complete 3D coverage of the entire face. Images are captured within a fraction of a second and full-frame 3D data is produced within a few seconds. This described method provides much better data coverage and accuracy in feature areas with sharp features or details (such as the nose and eyes). Using this 3D data, we have been able to demonstrate that a 3D approach can significantly improve the performance of facial recognition. We have conducted tests in which we have varied the lighting conditions and angle of image acquisition in the "field." These tests have shown that the matching results are significantly improved when enrolling a 3D image rather than a single 2D image. With its 3D solutions, Genex is working toward unlocking the promise of powerful 3D FR and transferring FR from a lab technology into a real-world biometric solution.

  17. ON THE ROLE OF FAST MAGNETIC RECONNECTION IN ACCRETING BLACK HOLE SOURCES

    SciTech Connect

    Singh, C. B.; De Gouveia Dal Pino, E. M.; Kadowaki, L. H. S. E-mail: dalpino@iag.usp.br

    2015-01-30

    We attempt to explain the observed radio and gamma-ray emission produced in the surroundings of black holes by employing a magnetically dominated accretion flow model and fast magnetic reconnection triggered by turbulence. In earlier work, a standard disk model was used and we refine the model by focusing on the sub-Eddington regime to address the fundamental plane of black hole activity. The results do not change substantially with regard to previous work, ensuring that the details of accretion physics are not relevant in the magnetic reconnection process occurring in the corona. Rather, our work puts fast magnetic reconnection events as a powerful mechanism operating in the core region near the jet base of black hole sources on more solid ground. For microquasars and low-luminosity active galactic nuclei, the observed correlation between radio emission and the mass of the sources can be explained by this process. The corresponding gamma-ray emission also seems to be produced in the same core region. On the other hand, emission from blazars and gamma-ray bursts cannot be correlated to core emission based on fast reconnection.

  18. Fast and slow radiation-driven wind solutions using ZEUS-3D

    NASA Astrophysics Data System (ADS)

    Araya, I.; Curé, M.; ud-Doula, A.; Santillán, A.

    2014-10-01

    Currently, the theory of radiation-driven winds of massive stars possess three known solutions for the velocity and density profiles of the stellar winds, namely: the fast, Ω -slow and δ -slow solutions. In order to confirm their stability we use a time-dependent numerical hydrodynamic code called ZEUS-3D, and then we compare their results with the stationary solutions from our numerical hydrodynamic code. ZEUS-3D needs an initial trial solution to start to integrate, for this we use the stationary solution (from our code) or a β-law for the velocity field. In both cases we obtain the same results. Fast and both slow stationary solutions are attained in ZEUS-3D and are all stable. Furthermore, there is a very good agreement with the velocity and density fields from ZEUS-3D and our code, having differences between the terminal velocities lower than 3%. In addition, we found that ZEUS-3D is very sensitive to the boundary conditions (base density and velocity profile), in some cases we obtain kinks in the velocity profiles, similar to the ones obtained by Madura et al. (2007) for stars with high rotation. Such kinks are most likely the result of the wind being mass overloaded, but further investigation is needed to understand its nature better. Currently, we are exploring the effects of small perturbation at the base of the wind in order to study possible transitions or oscillations between δ-slow and fast solutions.

  19. Optimal Local Searching for Fast and Robust Textureless 3D Object Tracking in Highly Cluttered Backgrounds.

    PubMed

    Seo, Byung-Kuk; Park, Jong-Il; Hinterstoisser, Stefan; Ilic, Slobodan

    2013-06-13

    Edge-based tracking is a fast and plausible approach for textureless 3D object tracking, but its robustness is still very challenging in highly cluttered backgrounds due to numerous local minima. To overcome this problem, we propose a novel method for fast and robust textureless 3D object tracking in highly cluttered backgrounds. The proposed method is based on optimal local searching of 3D-2D correspondences between a known 3D object model and 2D scene edges in an image with heavy background clutter. In our searching scheme, searching regions are partitioned into three levels (interior, contour, and exterior) with respect to the previous object region, and confident searching directions are determined by evaluating candidates of correspondences on their region levels; thus, the correspondences are searched among likely candidates in only the confident directions instead of searching through all candidates. To ensure the confident searching direction, we also adopt the region appearance, which is efficiently modeled on a newly defined local space (called a searching bundle). Experimental results and performance evaluations demonstrate that our method fully supports fast and robust textureless 3D object tracking even in highly cluttered backgrounds.

  20. Optimal local searching for fast and robust textureless 3D object tracking in highly cluttered backgrounds.

    PubMed

    Seo, Byung-Kuk; Park, Hanhoon; Park, Jong-Il; Hinterstoisser, Stefan; Ilic, Slobodan

    2014-01-01

    Edge-based tracking is a fast and plausible approach for textureless 3D object tracking, but its robustness is still very challenging in highly cluttered backgrounds due to numerous local minima. To overcome this problem, we propose a novel method for fast and robust textureless 3D object tracking in highly cluttered backgrounds. The proposed method is based on optimal local searching of 3D-2D correspondences between a known 3D object model and 2D scene edges in an image with heavy background clutter. In our searching scheme, searching regions are partitioned into three levels (interior, contour, and exterior) with respect to the previous object region, and confident searching directions are determined by evaluating candidates of correspondences on their region levels; thus, the correspondences are searched among likely candidates in only the confident directions instead of searching through all candidates. To ensure the confident searching direction, we also adopt the region appearance, which is efficiently modeled on a newly defined local space (called a searching bundle). Experimental results and performance evaluations demonstrate that our method fully supports fast and robust textureless 3D object tracking even in highly cluttered backgrounds.

  1. Reconnection-driven plasmoids in blazars: fast flares on a slow envelope

    NASA Astrophysics Data System (ADS)

    Giannios, Dimitrios

    2013-05-01

    TeV flares of a duration of ˜10 min have been observed in several blazars. The fast flaring requires compact regions in the jet that boost their emission towards the observer at an extreme Doppler factor of δem ≳ 50. For ˜100 GeV photons to avoid annihilation in the broad-line region of PKS 1222+216, the flares must come from large (pc) scales, challenging most models proposed to explain them. Here I elaborate on the magnetic reconnection minijet model for the blazar flaring, focusing on the inherently time-dependent aspects of the process of magnetic reconnection. I argue that, for the physical conditions prevailing in blazar jets, the reconnection layer fragments, leading to the formation a large number of plasmoids. Occasionally, a plasmoid grows to become a large, `monster' plasmoid. I show that radiation emitted from the reconnection event can account for the observed `envelope' of day-long blazar activity, while radiation from monster plasmoids can power the fastest TeV flares. The model is applied to several blazars with observed fast flaring. The inferred distance of the dissipation zone from the black hole and the typical size of the reconnection regions are Rdiss ˜ 0.3-1 pc and l' ≲ 1016 cm, respectively. The required magnetization of the jet at this distance is modest: σ ˜ a few. Such distance Rdiss and reconnection size l' are expected if the jet contains field structures with a size of the order of the black hole horizon.

  2. "Ideal" tearing and the transition to fast reconnection in the weakly collisional MHD and EMHD regimes

    NASA Astrophysics Data System (ADS)

    Del Sarto, Daniele; Pucci, Fulvia; Tenerani, Anna; Velli, Marco

    2016-03-01

    This paper discusses the transition to fast growth of the tearing instability in thin current sheets in the collisionless limit where electron inertia drives the reconnection process. It has been previously suggested that in resistive MHD there is a natural maximum aspect ratio (ratio of sheet length and breadth to thickness) which may be reached for current sheets with a macroscopic length L, the limit being provided by the fact that the tearing mode growth time becomes of the same order as the Alfvén time calculated on the macroscopic scale. For current sheets with a smaller aspect ratio than critical the normalized growth rate tends to zero with increasing Lundquist number S, while for current sheets with an aspect ratio greater than critical the growth rate diverges with S. Here we carry out a similar analysis but with electron inertia as the term violating magnetic flux conservation: previously found scalings of critical current sheet aspect ratios with the Lundquist number are generalized to include the dependence on the ratio de2/L2, where de is the electron skin depth, and it is shown that there are limiting scalings which, as in the resistive case, result in reconnecting modes growing on ideal time scales. Finite Larmor radius effects are then included, and the rescaling argument at the basis of "ideal" reconnection is proposed to explain secondary fast reconnection regimes naturally appearing in numerical simulations of current sheet evolution.

  3. Fast 3D shape measurement using Fourier transform profilometry without phase unwrapping

    NASA Astrophysics Data System (ADS)

    Song, Kechen; Hu, Shaopeng; Wen, Xin; Yan, Yunhui

    2016-09-01

    This paper presents a novel, simple, yet fast 3D shape measurement method using Fourier transform profilometry. Different from the conventional Fourier transform profilometry, this proposed method introduces the binocular stereo vision and employs two image pairs (i.e., original image pairs and fringe image pairs) to restructure 3D shape. In this proposed method, instead of phase unwrapping algorithm, a coarse disparity map is adopted as a constraint condition to realize phase matching using wrapped phase. Since the local phase matching and sub-pixel disparity refinement are proposed to obtain high measuring accuracy, high-quality phase is not required. The validity of the proposed method is verified by experiments.

  4. Evidence of 3-D Reconnection at Null Point from the Observations of Circular Flares and Homologous Jets

    NASA Astrophysics Data System (ADS)

    Wang, Haimin; Liu, C.

    2012-05-01

    In recent studies by Pariat, Antiochos and DeVore (2009, 2010), fan-separatrix topology and magnetic reconnection at the null-point were simulated and found to produce homologous jets. This motivates us to search for axisymmetric magnetic structure and associated flaring/jetting activity. Using high-resolution ( 0.15" per pixel) and high-cadence ( 15 s) H-alpha center/offband observations obtained from the recently digitized films of Big Bear Solar Observatory, we were able to identify five large circular flares with associated surges. All the events exhibit a central parasite magnetic field surrounded by opposite polarity, forming a circular polarity inversion line (PIL). Consequently, a compact flare kernel at the center is surrounded by a circular ribbon, and together with the upward ejecting dark surge, these seem to depict a dome-like magnetic structure. Very interestingly, (1) the circular ribbon brightens sequentially rather than simultaneously, (2) the central compact flare kernel shows obvious motion, and (3) a remote elongated, co-temporal flare ribbon at a region with the same polarity as the central parasite site is seen in the series of four homologous events on 1991 March 17 and 18. The remote ribbon is 120" away from the jet location. Moreover, magnetic reconnection across the circular PIL is evident from the magnetic flux cancellation. These rarely observed homologous surges with circular as well as central and remote flare ribbons provide valuable evidence concerning the dynamics of magnetic reconnection in a null-point topology. This study is dedicated to Professor Hal Zirin, the founder of Big Bear Solar Observatory, who passed away on January 3, 2012.

  5. IVUSAngio tool: a publicly available software for fast and accurate 3D reconstruction of coronary arteries.

    PubMed

    Doulaverakis, Charalampos; Tsampoulatidis, Ioannis; Antoniadis, Antonios P; Chatzizisis, Yiannis S; Giannopoulos, Andreas; Kompatsiaris, Ioannis; Giannoglou, George D

    2013-11-01

    There is an ongoing research and clinical interest in the development of reliable and easily accessible software for the 3D reconstruction of coronary arteries. In this work, we present the architecture and validation of IVUSAngio Tool, an application which performs fast and accurate 3D reconstruction of the coronary arteries by using intravascular ultrasound (IVUS) and biplane angiography data. The 3D reconstruction is based on the fusion of the detected arterial boundaries in IVUS images with the 3D IVUS catheter path derived from the biplane angiography. The IVUSAngio Tool suite integrates all the intermediate processing and computational steps and provides a user-friendly interface. It also offers additional functionality, such as automatic selection of the end-diastolic IVUS images, semi-automatic and automatic IVUS segmentation, vascular morphometric measurements, graphical visualization of the 3D model and export in a format compatible with other computer-aided design applications. Our software was applied and validated in 31 human coronary arteries yielding quite promising results. Collectively, the use of IVUSAngio Tool significantly reduces the total processing time for 3D coronary reconstruction. IVUSAngio Tool is distributed as free software, publicly available to download and use.

  6. Fast ion transport during applied 3D magnetic perturbations on DIII-D

    DOE PAGES

    Van Zeeland, Michael A.; Ferraro, N. M.; Grierson, Brian A.; ...

    2015-06-26

    In this paper, measurements show fast ion losses correlated with applied three-dimensional (3D) fields in a variety of plasmas ranging from L-mode to resonant magnetic perturbation (RMP) edge localized mode (ELM) suppressed H-mode discharges. In DIII-D L-mode discharges with a slowly rotatingmore » $n=2$ magnetic perturbation, scintillator detector loss signals synchronized with the applied fields are observed to decay within one poloidal transit time after beam turn-off indicating they arise predominantly from prompt loss orbits. Full orbit following using M3D-C1 calculations of the perturbed fields and kinetic profiles reproduce many features of the measured losses and points to the importance of the applied 3D field phase with respect to the beam injection location in determining the overall impact on prompt beam ion loss. Modeling of these results includes a self-consistent calculation of the 3D perturbed beam ion birth profiles and scrape-off-layer ionization, a factor found to be essential to reproducing the experimental measurements. Extension of the simulations to full slowing down timescales, including fueling and the effects of drag and pitch angle scattering, show the applied $n=3$ RMPs in ELM suppressed H-mode plasmas can induce a significant loss of energetic particles from the core. With the applied $n=3$ fields, up to 8.4% of the injected beam power is predicted to be lost, compared to 2.7% with axisymmetric fields only. These fast ions, originating from minor radii $$\\rho >0.7$$ , are predicted to be primarily passing particles lost to the divertor region, consistent with wide field-of-view infrared periscope measurements of wall heating in $n=3$ RMP ELM suppressed plasmas. Edge fast ion $${{\\text{D}}_{\\alpha}}$$ (FIDA) measurements also confirm a large change in edge fast ion profile due to the $n=3$ fields, where the effect was isolated by using short 50 ms RMP-off periods during which ELM suppression was maintained yet the fast ion profile

  7. Fast ion transport during applied 3D magnetic perturbations on DIII-D

    SciTech Connect

    Van Zeeland, Michael A.; Ferraro, N. M.; Grierson, Brian A.; Heidbrink, W. W.; Kramer, G. J.; Lasnier, C. J.; Pace, David C.; Allen, Steve L.; Chen, X.; Evans, T. E.; García-Muñoz, M.; Hanson, J. M.; Lanctot, M. J.; Lao, L. L.; Meyer, W. H.; Moyer, R. A.; Nazikian, R.; Orlov, D. M.; Paz-Soldan, C.; Wingen, A.

    2015-06-26

    In this paper, measurements show fast ion losses correlated with applied three-dimensional (3D) fields in a variety of plasmas ranging from L-mode to resonant magnetic perturbation (RMP) edge localized mode (ELM) suppressed H-mode discharges. In DIII-D L-mode discharges with a slowly rotating $n=2$ magnetic perturbation, scintillator detector loss signals synchronized with the applied fields are observed to decay within one poloidal transit time after beam turn-off indicating they arise predominantly from prompt loss orbits. Full orbit following using M3D-C1 calculations of the perturbed fields and kinetic profiles reproduce many features of the measured losses and points to the importance of the applied 3D field phase with respect to the beam injection location in determining the overall impact on prompt beam ion loss. Modeling of these results includes a self-consistent calculation of the 3D perturbed beam ion birth profiles and scrape-off-layer ionization, a factor found to be essential to reproducing the experimental measurements. Extension of the simulations to full slowing down timescales, including fueling and the effects of drag and pitch angle scattering, show the applied $n=3$ RMPs in ELM suppressed H-mode plasmas can induce a significant loss of energetic particles from the core. With the applied $n=3$ fields, up to 8.4% of the injected beam power is predicted to be lost, compared to 2.7% with axisymmetric fields only. These fast ions, originating from minor radii $\\rho >0.7$ , are predicted to be primarily passing particles lost to the divertor region, consistent with wide field-of-view infrared periscope measurements of wall heating in $n=3$ RMP ELM suppressed plasmas. Edge fast ion ${{\\text{D}}_{\\alpha}}$ (FIDA) measurements also confirm a large change in edge fast ion profile due to the $n=3$ fields, where the effect was isolated by using short 50 ms RMP-off periods during which ELM suppression was maintained yet the fast ion profile was allowed

  8. Modeling of traveling compression regions in the Earth's magnetotail by the spontaneous fast reconnection model

    SciTech Connect

    Ugai, M.; Zheng, L.

    2006-03-15

    The spontaneous fast reconnection model is applied to the traveling compression regions (TCRs) observed in the Earth's magnetotail lobe region in association with substorms. For this purpose, virtual satellites are located at spatial points in the (low-{beta}) magnetic field region in the three-dimenisonal simulation domain, so that each satellite directly observes the temporal variations of magnetic fields, obtained from simulations, in accordance with the growth and proceeding of the fast reconnection mechanism. If the virtual satellite is located ahead of the initial plasmoid formation, it observes a pulse-like field compression with the compression rate of more than 10% as well as the bipolar structure of the magnetic field component from northward to southward tilting, when the plasmoid center passes through the satellite location. On the other hand, if it is located behind the plasmoid formation, it observes the unipolar structure of the southward field component. The simulation results are shown to be, both quantitatively and qualitatively, in good agreement with the actual satellite observations. It is demonstrated that the TCR event is the fast reconnection mechanism itself that is seen in the ambient (low-{beta}) magnetic field (magnetotail lobe) region.

  9. Impulsive magnetic pulsations and electrojets in the loop footpoint driven by the fast reconnection jet

    SciTech Connect

    Ugai, M.

    2009-11-15

    It is well known that magnetic pulsations of long periods impulsively occur in accordance with the sudden onset of geomagnetic substorms and drastic enhancement of electrojets in the ionosphere. On the basis of the spontaneous fast reconnection model, the present paper examines the physical mechanism by which both magnetic pulsations and strong electrojets are impulsively driven by the fast (Alfvenic) reconnection jet. When a large-scale plasmoid [or traveling compression region (TCR)], directly caused by the fast reconnection jet, collides with the magnetic loop footpoint, strong electrojets are impulsively driven in a finite extent in the loop footpoint in accordance with the evolution of the current wedge and the generator current circuit. Simultaneously, magnetohydrodynamic (Alfven) waves, accompanied by the TCR, are reflected from the electrojet layer, leading to impulsive magnetic pulsations ahead of the loop footpoint because of the interaction (or resonance) between the reflected waves and the waves traveling toward the footpoint. The pulsations propagate outward in all directions from the source region of the wave reflection, and the pulsation periods are typically estimated to be of several tens of seconds.

  10. Fast Probabilistic Fusion of 3d Point Clouds via Occupancy Grids for Scene Classification

    NASA Astrophysics Data System (ADS)

    Kuhn, Andreas; Huang, Hai; Drauschke, Martin; Mayer, Helmut

    2016-06-01

    High resolution consumer cameras on Unmanned Aerial Vehicles (UAVs) allow for cheap acquisition of highly detailed images, e.g., of urban regions. Via image registration by means of Structure from Motion (SfM) and Multi View Stereo (MVS) the automatic generation of huge amounts of 3D points with a relative accuracy in the centimeter range is possible. Applications such as semantic classification have a need for accurate 3D point clouds, but do not benefit from an extremely high resolution/density. In this paper, we, therefore, propose a fast fusion of high resolution 3D point clouds based on occupancy grids. The result is used for semantic classification. In contrast to state-of-the-art classification methods, we accept a certain percentage of outliers, arguing that they can be considered in the classification process when a per point belief is determined in the fusion process. To this end, we employ an octree-based fusion which allows for the derivation of outlier probabilities. The probabilities give a belief for every 3D point, which is essential for the semantic classification to consider measurement noise. For an example point cloud with half a billion 3D points (cf. Figure 1), we show that our method can reduce runtime as well as improve classification accuracy and offers high scalability for large datasets.

  11. Spontaneous and chaotic fast reconnection in three dimensional current-sheets (Invited)

    NASA Astrophysics Data System (ADS)

    Bettarini, L.; Lapenta, G.

    2010-12-01

    Numerical experiments and analytical studies suggested that within the pure resistive magnetohydrodynamics framework it is not possible to have a magnetic field-line reconnecting dynamics that spontaneously evolves from a slow, resistive reconnection regime to a fast, high-power phase. The results presented here are the first able to show this transition in fully three dimensional volume-filling regions of macroscopic systems. It is provided a complete picture of the reconnecting dynamics of a current-sheet initially set in laminar conditions, which are representative of many laboratory and astrophysical plasmas. We show how the conversion of magnetic field energy via magnetic reconnection can progress in a fast, fully three-dimensional, volume-filling regime characterized by a chaotic evolution of the system. The process does not require any pre-existing turbulence seed which often is not observed in the host systems prior to the onset of the energy conversion. The two- and three-dimensional simulations presented here have an unprecedented low level of numerical diffusion that usually determines the dissipation of energy sources that otherwise can drive the instabilities sustaining the transition to the fast energy conversion process. Even though pre-existing two-dimensional simulation studies presented some signs of this transition, yet their limited dimensionality prevented them to correctly and completely describe the fully developed volume-filling energy conversion process. In fact this non-steady dynamics critically depends on the interplay of perturbations developing along the magnetic field lines and across them, a process possible only in three-dimensions. Examples and applications to astrophysical and solar plasmas are considered.

  12. PATTERNS OF X-RAY, CHROMOSPHERIC, AND RADIO EMISSION IN LOW-MASS STARS: FAST AND SLOW MAGNETIC RECONNECTION

    SciTech Connect

    Mullan, D. J.

    2010-10-01

    Magnetic reconnection events in the atmospheres of low-mass dwarf stars can be classified as either slow or fast, depending on whether ohmic diffusion or Hall currents dominate in the reconnection process. We suggest that the separation of reconnection into slow and fast categories can help to explain some systematics of low-mass dwarfs as regards their emissions in X-rays, H{alpha}, and radio. On the one hand, in the warmer dwarfs (fast reconnection is permitted, and this can explain the occurrence of flares and 'quiescent' coronal heating. On the other hand, the fact that the coolest dwarfs (>M7) are inefficient emitters in H{alpha} and X-rays but strong emitters in radio, may be understood in the context that only slow reconnection is permitted to occur in those stars, as a result of high electrical resistivity. However, even though only slow reconnection is permitted in the latter stars, the speed of the outflow jets from reconnection sites can serve as efficient sources of radio emission as a result of the electron cyclotron maser instability.

  13. Observations of Plasma Waves in the Colliding Jet Region of a 3D Magnetic Flux Rope Flanked by Two Active Reconnection X Lines at the Subsolar Magnetopause

    NASA Astrophysics Data System (ADS)

    Oieroset, M.; Sundkvist, D. J.; Chaston, C. C.; Phan, T. D.; Mozer, F.; McFadden, J. P.; Angelopoulos, V.; Andersson, L.; Eastwood, J. P.

    2014-12-01

    We have performed a detailed analysis of plasma and wave observations in a 3D magnetic flux rope encountered by the THEMIS spacecraft at the subsolar magnetopause. The extent of the flux rope was ˜270 ion skin depths in the outflow direction, and it was flanked by two active reconnection X lines producing colliding plasma jets in the flux rope core where ion heating and suprathermal electrons were observed. The colliding jet region was highly dynamic and characterized by the presence of high-frequency waves such as ion acoustic-like waves, electron holes, and whistler mode waves near the flux rope center and low-frequency kinetic Alfvén waves over a larger region. We will discuss possible links between these waves and particle heating.

  14. Optimization of 3D Poisson-Nernst-Planck model for fast evaluation of diverse protein channels.

    PubMed

    Dyrka, Witold; Bartuzel, Maciej M; Kotulska, Malgorzata

    2013-10-01

    We show the accuracy and applicability of our fast algorithmic implementation of a three-dimensional Poisson-Nernst-Planck (3D-PNP) flow model for characterizing different protein channels. Due to its high computational efficiency, our model can predict the full current-voltage characteristics of a channel within minutes, based on the experimental 3D structure of the channel or its computational model structure. Compared with other methods, such as Brownian dynamics, which currently needs a few weeks of the computational time, or even much more demanding molecular dynamics modeling, 3D-PNP is the only available method for a function-based evaluation of very numerous tentative structural channel models. Flow model tests of our algorithm and its optimal parametrization are provided for five native channels whose experimental structures are available in the protein data bank (PDB) in an open conductive state, and whose experimental current-voltage characteristics have been published. The channels represent very different geometric and structural properties, which makes it the widest test to date of the accuracy of 3D-PNP on real channels. We test whether the channel conductance, rectification, and charge selectivity obtained from the flow model, could be sufficiently sensitive to single-point mutations, related to unsignificant changes in the channel structure. Our results show that the classical 3D-PNP model, under proper parametrization, is able to achieve a qualitative agreement with experimental data for a majority of the tested characteristics and channels, including channels with narrow and irregular conductivity pores. We propose that although the standard PNP model cannot provide insight into complex physical phenomena due to its intrinsic limitations, its semiquantitative agreement is achievable for rectification and selectivity at a level sufficient for the bioinformatical purpose of selecting the best structural models with a great advantage of a very short

  15. A fast nonlinear conjugate gradient based method for 3D concentrated frictional contact problems

    NASA Astrophysics Data System (ADS)

    Zhao, Jing; Vollebregt, Edwin A. H.; Oosterlee, Cornelis W.

    2015-05-01

    This paper presents a fast numerical solver for a nonlinear constrained optimization problem, arising from 3D concentrated frictional shift and rolling contact problems with dry Coulomb friction. The solver combines an active set strategy with a nonlinear conjugate gradient method. One novelty is to consider the tractions of each slip element in a polar coordinate system, using azimuth angles as variables instead of conventional traction variables. The new variables are scaled by the diagonal of the underlying Jacobian. The fast Fourier transform (FFT) technique accelerates all matrix-vector products encountered, exploiting the matrix' Toeplitz structure. Numerical tests demonstrate a significant reduction of the computational time compared to existing solvers for concentrated contact problems.

  16. Fast 3D spine reconstruction of postoperative patients using a multilevel statistical model.

    PubMed

    Lecron, Fabian; Boisvert, Jonathan; Mahmoudi, Saïd; Labelle, Hubert; Benjelloun, Mohammed

    2012-01-01

    Severe cases of spinal deformities such as scoliosis are usually treated by a surgery where instrumentation (hooks, screws and rods) is installed to the spine to correct deformities. Even if the purpose is to obtain a normal spine curve, the result is often straighter than normal. In this paper, we propose a fast statistical reconstruction algorithm based on a general model which can deal with such instrumented spines. To this end, we present the concept of multilevel statistical model where the data are decomposed into a within-group and a between-group component. The reconstruction procedure is formulated as a second-order cone program which can be solved very fast (few tenths of a second). Reconstruction errors were evaluated on real patient data and results showed that multilevel modeling allows better 3D reconstruction than classical models.

  17. FAST MAGNETIC RECONNECTION IN THE SOLAR CHROMOSPHERE MEDIATED BY THE PLASMOID INSTABILITY

    SciTech Connect

    Ni, Lei; Kliem, Bernhard; Lin, Jun; Wu, Ning

    2015-01-20

    Magnetic reconnection in the partially ionized solar chromosphere is studied in 2.5 dimensional magnetohydrodynamic simulations including radiative cooling and ambipolar diffusion. A Harris current sheet with and without a guide field is considered. Characteristic values of the parameters in the middle chromosphere imply a high magnetic Reynolds number of ∼10{sup 6}-10{sup 7} in the present simulations. Fast magnetic reconnection then develops as a consequence of the plasmoid instability without the need to invoke anomalous resistivity enhancements. Multiple levels of the instability are followed as it cascades to smaller scales, which approach the ion inertial length. The reconnection rate, normalized to the asymptotic values of magnetic field and Alfvén velocity in the inflow region, reaches values in the range ∼0.01-0.03 throughout the cascading plasmoid formation and for zero as well as for strong guide field. The outflow velocity reaches ≈40 km s{sup –1}. Slow-mode shocks extend from the X-points, heating the plasmoids up to ∼8 × 10{sup 4} K. In the case of zero guide field, the inclusion of both ambipolar diffusion and radiative cooling causes a rapid thinning of the current sheet (down to ∼30 m) and early formation of secondary islands. Both of these processes have very little effect on the plasmoid instability for a strong guide field. The reconnection rates, temperature enhancements, and upward outflow velocities from the vertical current sheet correspond well to their characteristic values in chromospheric jets.

  18. Fast and robust 3D ultrasound registration--block and game theoretic matching.

    PubMed

    Banerjee, Jyotirmoy; Klink, Camiel; Peters, Edward D; Niessen, Wiro J; Moelker, Adriaan; van Walsum, Theo

    2015-02-01

    Real-time 3D US has potential for image guidance in minimally invasive liver interventions. However, motion caused by patient breathing makes it hard to visualize a localized area, and to maintain alignment with pre-operative information. In this work we develop a fast affine registration framework to compensate in real-time for liver motion/displacement due to breathing. The affine registration of two consecutive ultrasound volumes in time is performed using block-matching. For a set of evenly distributed points in one volume and their correspondences in the other volume, we propose a robust outlier rejection method to reject false matches. The inliers are then used to determine the affine transformation. The approach is evaluated on 13 4D ultrasound sequences acquired from 8 subjects. For 91 pairs of 3D ultrasound volumes selected from these sequences, a mean registration error of 1.8mm is achieved. A graphics processing unit (GPU) implementation runs the 3D US registration at 8 Hz.

  19. Fast 3D Chemical Exchange Saturation Transfer (CEST) Imaging of the Human Brain

    PubMed Central

    Zhu, He; Jones, Craig K.; van Zijl, Peter C. M.; Barker, Peter B.; Zhou, Jinyuan

    2010-01-01

    Chemical exchange saturation transfer (CEST) MRI can detect low-concentration compounds with exchangeable protons through saturation transfer to water. CEST imaging is generally slow, as it requires acquisition of saturation images at multiple frequencies. In addition, multi-slice imaging is complicated by saturation effects differing from slice to slice because of relaxation losses. In this study, a fast three-dimensional (3D) CEST imaging sequence is presented that allows whole-brain coverage for a frequency-dependent saturation spectrum (z-spectrum, 26 frequencies) in less than 10 min. The approach employs a 3D gradient- and spin-echo (GRASE) readout using a prototype 32-channel phased-array coil, combined with two-dimensional SENSE accelerations. Results from a homogenous protein-containing phantom at 3T show that the sequence produced a uniform contrast across all slices. To show translational feasibility, scans were also performed on five healthy human subjects. Results for CEST images at 3.5ppm downfield of the water resonance, so-called amide proton transfer (APT) images, show that lipid signals are sufficiently suppressed and artifacts caused by B0 inhomogeneity can be removed in post-processing. The scan time and image quality of these in vivo results show that 3D CEST MRI using GRASE acquisition is feasible for whole-brain CEST studies at 3T in a clinical time frame. PMID:20632402

  20. A 3D Chemically Modified Graphene Hydrogel for Fast, Highly Sensitive, and Selective Gas Sensor

    PubMed Central

    Wu, Jin; Tao, Kai; Guo, Yuanyuan; Li, Zhong; Wang, Xiaotian; Luo, Zhongzhen; Du, Chunlei; Chen, Di; Norford, Leslie K.

    2016-01-01

    Reduced graphene oxide (RGO) has proved to be a promising candidate in high‐performance gas sensing in ambient conditions. However, trace detection of different kinds of gases with simultaneously high sensitivity and selectivity is challenging. Here, a chemiresistor‐type sensor based on 3D sulfonated RGO hydrogel (S‐RGOH) is reported, which can detect a variety of important gases with high sensitivity, boosted selectivity, fast response, and good reversibility. The NaHSO3 functionalized RGOH displays remarkable 118.6 and 58.9 times higher responses to NO2 and NH3, respectively, compared with its unmodified RGOH counterpart. In addition, the S‐RGOH sensor is highly responsive to volatile organic compounds. More importantly, the characteristic patterns on the linearly fitted response–temperature curves are employed to distinguish various gases for the first time. The temperature of the sensor is elevated rapidly by an imbedded microheater with little power consumption. The 3D S‐RGOH is characterized and the sensing mechanisms are proposed. This work gains new insights into boosting the sensitivity of detecting various gases by combining chemical modification and 3D structural engineering of RGO, and improving the selectivity of gas sensing by employing temperature dependent response characteristics of RGO for different gases. PMID:28331786

  1. Fast 3D modeling in complex environments using a single Kinect sensor

    NASA Astrophysics Data System (ADS)

    Yue, Haosong; Chen, Weihai; Wu, Xingming; Liu, Jingmeng

    2014-02-01

    Three-dimensional (3D) modeling technology has been widely used in inverse engineering, urban planning, robot navigation, and many other applications. How to build a dense model of the environment with limited processing resources is still a challenging topic. A fast 3D modeling algorithm that only uses a single Kinect sensor is proposed in this paper. For every color image captured by Kinect, corner feature extraction is carried out first. Then a spiral search strategy is utilized to select the region of interest (ROI) that contains enough feature corners. Next, the iterative closest point (ICP) method is applied to the points in the ROI to align consecutive data frames. Finally, the analysis of which areas can be walked through by human beings is presented. Comparative experiments with the well-known KinectFusion algorithm have been done and the results demonstrate that the accuracy of the proposed algorithm is the same as KinectFusion but the computing speed is nearly twice of KinectFusion. 3D modeling of two scenes of a public garden and traversable areas analysis in these regions further verified the feasibility of our algorithm.

  2. Plasmoid Instabilities Mediated Three-Dimensional Magnetohydrodynamic Turbulent Reconnection

    SciTech Connect

    Huang, Yi-min; Guo, Fan

    2015-07-21

    After some introductory remarks on fast reconnection in resistive MHD due to plasmoid instability, oblique tearing modes in 3D, and previous studies on 3D turbulent reconnection, the subject is presented under the following topics: 3D simulation setup, time evolution of the 3D simulation, comparison with Sweet-Parker and 2D plasmoid reconnection, and diagnostics of the turbulent state (decomposition of mean fields and fluctuations, power spectra of energy fluctuations, structure function and eddy anisotropy with respect to local magnetic field). Three primary conclusions were reached: (1) The results suggest that 3D plasmoid instabilities can lead to self-generated turbulent reconnection (evidence of energy cascade and development of inertial range, energy fluctuations preferentially align with the local magnetic field, which is one of the characteristics of MHD turbulence); (2) The turbulence is highly inhomogeneous, due to the presence of magnetic shear and outflow jets (conventional MHD turbulence theories or phenomenologies may not be applicable – e.g. scale-dependent anisotropy as predicted by Goldreich & Sridhar is not found); (3) 3D turbulent reconnection is different from 2D plasmoid-dominated reconnection in many aspects. However, in fully developed state, reconnection rates in 2D and 3D are comparable — this result needs to be further checked in higher S.

  3. Fast 3-D large-scale gravity and magnetic modeling using unstructured grids and an adaptive multilevel fast multipole method

    NASA Astrophysics Data System (ADS)

    Ren, Zhengyong; Tang, Jingtian; Kalscheuer, Thomas; Maurer, Hansruedi

    2017-01-01

    A novel fast and accurate algorithm is developed for large-scale 3-D gravity and magnetic modeling problems. An unstructured grid discretization is used to approximate sources with arbitrary mass and magnetization distributions. A novel adaptive multilevel fast multipole (AMFM) method is developed to reduce the modeling time. An observation octree is constructed on a set of arbitrarily distributed observation sites, while a source octree is constructed on a source tetrahedral grid. A novel characteristic is the independence between the observation octree and the source octree, which simplifies the implementation of different survey configurations such as airborne and ground surveys. Two synthetic models, a cubic model and a half-space model with mountain-valley topography, are tested. As compared to analytical solutions of gravity and magnetic signals, excellent agreements of the solutions verify the accuracy of our AMFM algorithm. Finally, our AMFM method is used to calculate the terrain effect on an airborne gravity data set for a realistic topography model represented by a triangular surface retrieved from a digital elevation model. Using 16 threads, more than 5800 billion interactions between 1,002,001 observation points and 5,839,830 tetrahedral elements are computed in 453.6 s. A traditional first-order Gaussian quadrature approach requires 3.77 days. Hence, our new AMFM algorithm not only can quickly compute the gravity and magnetic signals for complicated problems but also can substantially accelerate the solution of 3-D inversion problems.

  4. Characteristics of spondylotic myelopathy on 3D driven-equilibrium fast spin echo and 2D fast spin echo magnetic resonance imaging: a retrospective cross-sectional study.

    PubMed

    Abdulhadi, Mike A; Perno, Joseph R; Melhem, Elias R; Nucifora, Paolo G P

    2014-01-01

    In patients with spinal stenosis, magnetic resonance imaging of the cervical spine can be improved by using 3D driven-equilibrium fast spin echo sequences to provide a high-resolution assessment of osseous and ligamentous structures. However, it is not yet clear whether 3D driven-equilibrium fast spin echo sequences adequately evaluate the spinal cord itself. As a result, they are generally supplemented by additional 2D fast spin echo sequences, adding time to the examination and potential discomfort to the patient. Here we investigate the hypothesis that in patients with spinal stenosis and spondylotic myelopathy, 3D driven-equilibrium fast spin echo sequences can characterize cord lesions equally well as 2D fast spin echo sequences. We performed a retrospective analysis of 30 adult patients with spondylotic myelopathy who had been examined with both 3D driven-equilibrium fast spin echo sequences and 2D fast spin echo sequences at the same scanning session. The two sequences were inspected separately for each patient, and visible cord lesions were manually traced. We found no significant differences between 3D driven-equilibrium fast spin echo and 2D fast spin echo sequences in the mean number, mean area, or mean transverse dimensions of spondylotic cord lesions. Nevertheless, the mean contrast-to-noise ratio of cord lesions was decreased on 3D driven-equilibrium fast spin echo sequences compared to 2D fast spin echo sequences. These findings suggest that 3D driven-equilibrium fast spin echo sequences do not need supplemental 2D fast spin echo sequences for the diagnosis of spondylotic myelopathy, but they may be less well suited for quantitative signal measurements in the spinal cord.

  5. A simple, fast, and repeatable survey method for underwater visual 3D benthic mapping and monitoring.

    PubMed

    Pizarro, Oscar; Friedman, Ariell; Bryson, Mitch; Williams, Stefan B; Madin, Joshua

    2017-03-01

    Visual 3D reconstruction techniques provide rich ecological and habitat structural information from underwater imagery. However, an unaided swimmer or diver struggles to navigate precisely over larger extents with consistent image overlap needed for visual reconstruction. While underwater robots have demonstrated systematic coverage of areas much larger than the footprint of a single image, access to suitable robotic systems is limited and requires specialized operators. Furthermore, robots are poor at navigating hydrodynamic habitats such as shallow coral reefs. We present a simple approach that constrains the motion of a swimmer using a line unwinding from a fixed central drum. The resulting motion is the involute of a circle, a spiral-like path with constant spacing between revolutions. We test this survey method at a broad range of habitats and hydrodynamic conditions encircling Lizard Island in the Great Barrier Reef, Australia. The approach generates fast, structured, repeatable, and large-extent surveys (~110 m(2) in 15 min) that can be performed with two people and are superior to the commonly used "mow the lawn" method. The amount of image overlap is a design parameter, allowing for surveys that can then be reliably used in an automated processing pipeline to generate 3D reconstructions, orthographically projected mosaics, and structural complexity indices. The individual images or full mosaics can also be labeled for benthic diversity and cover estimates. The survey method we present can serve as a standard approach to repeatedly collecting underwater imagery for high-resolution 2D mosaics and 3D reconstructions covering spatial extents much larger than a single image footprint without requiring sophisticated robotic systems or lengthy deployment of visual guides. As such, it opens up cost-effective novel observations to inform studies relating habitat structure to ecological processes and biodiversity at scales and spatial resolutions not readily

  6. Fast 3D visualization of endogenous brain signals with high-sensitivity laser scanning photothermal microscopy

    PubMed Central

    Miyazaki, Jun; Iida, Tadatsune; Tanaka, Shinji; Hayashi-Takagi, Akiko; Kasai, Haruo; Okabe, Shigeo; Kobayashi, Takayoshi

    2016-01-01

    A fast, high-sensitivity photothermal microscope was developed by implementing a spatially segmented balanced detection scheme into a laser scanning microscope. We confirmed a 4.9 times improvement in signal-to-noise ratio in the spatially segmented balanced detection compared with that of conventional detection. The system demonstrated simultaneous bi-modal photothermal and confocal fluorescence imaging of transgenic mouse brain tissue with a pixel dwell time of 20 μs. The fluorescence image visualized neurons expressing yellow fluorescence proteins, while the photothermal signal detected endogenous chromophores in the mouse brain, allowing 3D visualization of the distribution of various features such as blood cells and fine structures probably due to lipids. This imaging modality was constructed using compact and cost-effective laser diodes, and will thus be widely useful in the life and medical sciences. PMID:27231615

  7. Fast 3-D temporal focusing microscopy using an electrically tunable lens.

    PubMed

    Jiang, Jun; Zhang, Dapeng; Walker, Steven; Gu, Chenglin; Ke, Ya; Yung, Wing Ho; Chen, Shih-chi

    2015-09-21

    In this paper, we present a 3-D temporal focusing microscope based on an electrically tunable lens (ETL) and a femtosecond regenerative laser amplifier. The focus-tunable lens provides a fast and compact way to perform non-mechanical z-scanning and resolves the blurry image issue compared with GVD-based z-scanning methods. The optical performance of the temporal focusing system, including z-scanning characteristics, the associated the magnification variation, and the lateral and axial resolution, has been studied and characterized using calibrated Rhodamine-6G thin film sample, fluorescent beads, and pollen samples. Lastly, we demonstrate the optical cross-sectioning and z-scanning capability with an in vivo experiment, where Ca(2+) imaging of neurons in GaCamp6 labeled zebrafish was performed.

  8. A successive three-point scheme for fast ray tracing in complex 3D geological models

    NASA Astrophysics Data System (ADS)

    Li, F.; Xu, T.; Zhang, M.; Zhang, Z.

    2013-12-01

    We present a new 3D ray-tracing method that can be applied to computations of traveltime and ray-paths of seismic transmitted, reflected and turning waves in complex geologic models, which consist of arbitrarily shaped blocks whose boundaries are matched by triangulated interfaces for computational efficiency. The new ray-tracing scheme combines the segmentally iterative ray tracing (SIRT) method and the pseudo-bending scheme so as to become a robust and fast ray-tracing method for seismic waves. The new method is extension of our previous constant block models and constant gradient block models to generally heterogeneous block models, and incorporates triangulated interfaces defining boundaries of complex geological bodies, so that it becomes applicable for practical problems. A successive three-point perturbation scheme is formulated that iteratively updates the midpoints of a segment based on an initial ray-path. The corrections of the midpoints are accomplished by first-order analytic formulae according to locations of the midpoint inside the block or on the boundaries of the blocks, to which the updating formulae of the pseudo-bending method and SIRT algorithm are applied instead of the traditional iterative methods. Numerical experiments, including an example in the Bohemian Massif, demonstrate that successive three-point scheme is effective and capable for kinematic ray tracing in complex 3D heterogeneous media.

  9. ALE3D Simulation of Heating and Violence in a Fast Cookoff Experiment with LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; Nichols, A L; deHaven, M R; Strand, O T

    2006-06-26

    We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.

  10. ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment with LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R

    2006-11-22

    We performed a computational and experimental analysis of fast cookoff of LX-10 (94.7% HMX, 5.3% Viton A) confined in a 2 kbar steel tube with reinforced end caps. A Scaled-Thermal-Explosion-eXperiment (STEX) was completed in which three radiant heaters were used to heat the vessel until ignition, resulting in a moderately violent explosion after 20.4 minutes. Thermocouple measurements showed tube temperatures as high as 340 C at ignition and LX-10 surface temperatures as high as 279 C, which is near the melting point of HMX. Three micro-power radar systems were used to measure mean fragment velocities of 840 m/s. Photonics Doppler Velocimeters (PDVs) showed a rapid acceleration of fragments over 80 {micro}s. A one-dimensional ALE3D cookoff model at the vessel midplane was used to simulate the heating, thermal expansion, LX-10 decomposition composition, and closing of the gap between the HE (High Explosive) and vessel wall. Although the ALE3D simulation terminated before ignition, the model provided a good representation of heat transfer through the case and across the dynamic gap to the explosive.

  11. Fast and flexible 3D object recognition solutions for machine vision applications

    NASA Astrophysics Data System (ADS)

    Effenberger, Ira; Kühnle, Jens; Verl, Alexander

    2013-03-01

    In automation and handling engineering, supplying work pieces between different stages along the production process chain is of special interest. Often the parts are stored unordered in bins or lattice boxes and hence have to be separated and ordered for feeding purposes. An alternative to complex and spacious mechanical systems such as bowl feeders or conveyor belts, which are typically adapted to the parts' geometry, is using a robot to grip the work pieces out of a bin or from a belt. Such applications are in need of reliable and precise computer-aided object detection and localization systems. For a restricted range of parts, there exists a variety of 2D image processing algorithms that solve the recognition problem. However, these methods are often not well suited for the localization of randomly stored parts. In this paper we present a fast and flexible 3D object recognizer that localizes objects by identifying primitive features within the objects. Since technical work pieces typically consist to a substantial degree of geometric primitives such as planes, cylinders and cones, such features usually carry enough information in order to determine the position of the entire object. Our algorithms use 3D best-fitting combined with an intelligent data pre-processing step. The capability and performance of this approach is shown by applying the algorithms to real data sets of different industrial test parts in a prototypical bin picking demonstration system.

  12. Fast 3D inversion of gravity data using solution space priorconditioned lanczos bidiagonalization

    NASA Astrophysics Data System (ADS)

    Rezaie, Mohammad; Moradzadeh, Ali; Kalateh, Ali Nejati

    2017-01-01

    Inversion of gravity data is one of the most important steps in the quantitative interpretation of practical data. Inversion is a mathematical technique that automatically constructs a subsurface geophysical model from measured data, incorporating some priori information. Inversion of gravity data is time consuming because of increase in data and model parameters. Some efforts have been made to deal with this problem, one of them is using fast algorithms for solving system of equations in inverse problem. Lanczos bidiagonalization method is a fast algorithm that works based on Krylov subspace iterations and projection method, but cannot always provide a good basis for a projection method. So in this study, we combined the Krylov method with a regularization method applied to the low-dimensional projected problem. To achieve the goal, the orthonormal basis vectors of the discrete cosine transform (DCT) were used to build the low-dimensional subspace. The forward operator matrix replaced with a matrix of lower dimension, thus, the required memory and running time of the inverse modeling is decreased by using the proposed algorithm. It is shown that this algorithm can be appropriate to solve a Tikhonov cost function for inversion of gravity data. The proposed method has been applied on a noise-corrupted synthetic data and field gravity data (Mobrun gravity data) to demonstrate its reliability for three dimensional (3D) gravity inversion. The obtained results of 3D inversion both synthetic and field gravity data (Mobrun gravity data) indicate the proposed inversion algorithm could produce density models consistent with true structures.

  13. 3D-printed paper spray ionization cartridge with fast wetting and continuous solvent supply features.

    PubMed

    Salentijn, Gert I J; Permentier, Hjalmar P; Verpoorte, Elisabeth

    2014-12-02

    We report the development of a 3D-printed cartridge for paper spray ionization (PSI) that can be used almost immediately after solvent introduction in a dedicated reservoir and allows prolonged spray generation from a paper tip. The fast wetting feature described in this work is based on capillary action through paper and movement of fluid between paper and the cartridge material (polylactic acid, PLA). The influence of solvent composition, PLA conditioning of the cartridge with isopropanol, and solvent volume introduced into the reservoir have been investigated with relation to wetting time and the amount of solvent consumed for wetting. Spray has been demonstrated with this cartridge for tens of minutes, without any external pumping. It is shown that fast wetting and spray generation can easily be achieved using a number of solvent mixtures commonly used for PSI. The PSI cartridge was applied to the analysis of lidocaine from a paper tip using different solvent mixtures, and to the analysis of lidocaine from a serum sample. Finally, a demonstration of online paper chromatography-mass spectrometry is given.

  14. Non-contrast-enhanced MR angiography using 3D ECG-synchronized half-Fourier fast spin echo.

    PubMed

    Miyazaki, M; Sugiura, S; Tateishi, F; Wada, H; Kassai, Y; Abe, H

    2000-11-01

    A non-contrast-enhanced three-dimensional (3D) magnetic resonance angiography (MRA) technique, which acquires images in a reasonably short scanning time and requires no contrast agent, is developed. An electrocardiographically (ECG) synchronized 3D half-Fourier fast spin-echo (FSE) technique with an appropriate ECG delay time for every slice encoding in 3D terms was used to examine the thoracic and iliac regions in 16 healthy volunteers at both 0.5 and 1.5 T. Prior to each 3D fresh blood imaging (FBI) experiment, an ECG preparation (ECG-prep) scan was acquired, and an appropriate ECG triggering time was selected for 3D FBI acquisition to optimize visualization of the vessel of interest. In the thoracic and abdominal regions, good-quality 3D MRA images were obtained. Furthermore, the weighted subtraction of two images in different phases provides contrast enhancement between arteries and veins.

  15. ALE3D Simulation and Measurement of Violence in a Fast Cookoff Experiment for LX-10

    SciTech Connect

    McClelland, M A; Maienschein, J L; Howard, W M; deHaven, M R

    2006-05-23

    Fast cookoff is of interest in the areas of fire hazard reduction and the development of directed energy systems for defense. During a fast cookoff (thermal explosion), high heat fluxes cause rapid temperature increases and ignition in thin boundary layers. We are developing ALE3D models to describe the thermal, chemical, and mechanical behavior during the heating, ignition, and explosive phases. The candidate models and numerical strategies are being evaluated using benchmark cookoff experiments. Fast cookoff measurements were made in a Scaled-Thermal-Explosion-eXperiment (STEX) for LX-10 (94.7% HMX, 5.3% Viton A) confined in a 4130 steel tube with reinforced end caps. Gaps were present at the side and top of the explosive charge to allow for thermal expansion. The explosive was heated until explosion using radiant heaters. Temperatures were measured using thermocouples positioned on the tube wall and in the explosive. During the explosion, the tube expansion and fragment velocities were measured with strain gauges, Photonic-Doppler-Velocimeters (PDVs), and micropower radar units. A fragment size distribution was constructed from fragments captured in Lexan panels. ALE3D models for chemical, thermal, and mechanical behavior were developed for the heating and explosive processes. A multi-step chemical kinetics model is employed for the HMX while a one-step model is used for the Viton. A pressure-dependent deflagration model is employed during the expansion. A Steinberg-Guinan model represents the mechanical behavior of the solid constituents while polynomial and gamma-law expressions are used for the equation of state of the solid and gas species, respectively. Parameters for the kinetics model were specified using measurements of the One-Dimensional-Time-to-Explosion (ODTX), while measurements for burn rate were employed to determine parameters in the burn front model. The simulations include radiative and conductive transport across the dynamic gaps between the

  16. 3-D Ground Displacement Monitoring of very fast-moving Landslides in Emergency Scenario

    NASA Astrophysics Data System (ADS)

    Casu, Francesco; Manconi, Andrea; Bonano, Manuela; De Luca, Claudio; Elefante, Stefano

    2014-05-01

    On December 3rd, 2013, a large and fast-moving landslide phenomena, which occurred in South-West of Montescaglioso town (southern Italy) after some days of intense raining, caused ground displacements on the order of several meters. The mass wasting involved an important freeway connection disrupting more than 500 meters of the route and some isolated buildings. In this work we present a case study of application of SAR remote sensing techniques for retrieving ground displacement field in a landslide emergency scenario. To this aim, thanks to the availability of ascending and descending COSMO-SkyMed (CSK) satellite acquisitions, we first applied the DInSAR technique (Massonnet et al., 1993) to both datasets, for generating differential interferograms across the investigated event. In particular, two data pairs (one ascending and one descending) involving pre- and post-event epochs and approximately spanning the same time interval were identified. Unfortunately, the DInSAR analysis produced unsatisfactory results, because of the excessive phase noise within the area of interest, mainly related to the fast-moving deformation pattern (several meters) and also to the presence of vegetation. To overcome the above mentioned limitations, the amplitude-based Pixel Offset (PO) technique (Fialko and Simons, 2001) was applied to the previous identified CSK data pairs. In this case, the PO technique allowed us to retrieve the projection of the surface displacements across and along the satellite's track (range and azimuth, respectively) for both the ascending and descending orbits. Then, by properly combining these 2-D maps of the measured surface movements, we also retrieved the 3-D ground deformation pattern, i.e. the North, East and Vertical displacement components. The ground displacements have a main SSE component, with values exceeding 10 meters. Moreover, large subsidence values were identified in those areas experiencing the largest damages, as well as a clear uplift

  17. Fast 3D Net Expeditions: Tools for Effective Scientific Collaboration on the World Wide Web

    NASA Technical Reports Server (NTRS)

    Watson, Val; Chancellor, Marisa K. (Technical Monitor)

    1996-01-01

    Two new technologies, the FASTexpedition and Remote FAST, have been developed that provide remote, 3D (three dimensional), high resolution, dynamic, interactive viewing of scientific data. The FASTexpedition permits one to access scientific data from the World Wide Web, take guided expeditions through the data, and continue with self controlled expeditions through the data. Remote FAST permits collaborators at remote sites to simultaneously view an analysis of scientific data being controlled by one of the collaborators. Control can be transferred between sites. These technologies are now being used for remote collaboration in joint university, industry, and NASA projects. Also, NASA Ames Research Center has initiated a project to make scientific data and guided expeditions through the data available as FASTexpeditions on the World Wide Web for educational purposes. Previously, remote visualization of dynamic data was done using video format (transmitting pixel information) such as video conferencing or MPEG (Motion Picture Expert Group) movies on the Internet. The concept for this new technology is to send the raw data (e.g., grids, vectors, and scalars) along with viewing scripts over the Internet and have the pixels generated by a visualization tool running on the viewers local workstation. The visualization tool that is currently used is FAST (Flow Analysis Software Toolkit). The advantages of this new technology over using video format are: (1) The visual is much higher in resolution (1280x1024 pixels with 24 bits of color) than typical video format transmitted over the network. (2) The form of the visualization can be controlled interactively (because the viewer is interactively controlling the visualization tool running on his workstation). (3) A rich variety of guided expeditions through the data can be included easily. (4) A capability is provided for other sites to see a visual analysis of one site as the analysis is interactively performed. Control of

  18. Fast 3D inversion of airborne gravity-gradiometry data using Lanczos bidiagonalization method

    NASA Astrophysics Data System (ADS)

    Meng, Zhaohai; Li, Fengting; Zhang, Dailei; Xu, Xuechun; Huang, Danian

    2016-09-01

    We developed a new fast inversion method for to process and interpret airborne gravity gradiometry data, which was based on Lanczos bidiagonalization algorithm. Here, we describe the application of this new 3D gravity gradiometry inversion method to recover a subsurface density distribution model from the airborne measured gravity gradiometry anomalies. For this purpose, the survey area is divided into a large number of rectangular cells with each cell possessing a constant unknown density. It is well known that the solution of large linear gravity gradiometry is an ill-posed problem since using the smoothest inversion method is considerably time consuming. We demonstrate that the Lanczos bidiagonalization method can be an appropriate algorithm to solve a Tikhonov solver time cost function for resolving the large equations within a short time. Lanczos bidiagonalization is designed to make the very large gravity gradiometry forward modeling matrices to become low-rank, which will considerably reduce the running time of the inversion method. We also use a weighted generalized cross validation method to choose the appropriate Tikhonov parameter to improve inversion results. The inversion incorporates a model norm that allows us to attain the smoothing and depth of the solution; in addition, the model norm counteracts the natural decay of the kernels, which concentrate at shallow depths. The method is applied on noise-contaminated synthetic gravity gradiometry data to demonstrate its suitability for large 3D gravity gradiometry data inversion. The airborne gravity gradiometry data from the Vinton Salt Dome, USE, were considered as a case study. The validity of the new method on real data is discussed with reference to the Vinton Dome inversion result. The intermediate density values in the constructed model coincide well with previous results and geological information. This demonstrates the validity of the gravity gradiometry inversion method.

  19. Super-resolution imaging of the cytokinetic Z ring in live bacteria using fast 3D-structured illumination microscopy (f3D-SIM).

    PubMed

    Turnbull, Lynne; Strauss, Michael P; Liew, Andrew T F; Monahan, Leigh G; Whitchurch, Cynthia B; Harry, Elizabeth J

    2014-09-29

    Imaging of biological samples using fluorescence microscopy has advanced substantially with new technologies to overcome the resolution barrier of the diffraction of light allowing super-resolution of live samples. There are currently three main types of super-resolution techniques - stimulated emission depletion (STED), single-molecule localization microscopy (including techniques such as PALM, STORM, and GDSIM), and structured illumination microscopy (SIM). While STED and single-molecule localization techniques show the largest increases in resolution, they have been slower to offer increased speeds of image acquisition. Three-dimensional SIM (3D-SIM) is a wide-field fluorescence microscopy technique that offers a number of advantages over both single-molecule localization and STED. Resolution is improved, with typical lateral and axial resolutions of 110 and 280 nm, respectively and depth of sampling of up to 30 µm from the coverslip, allowing for imaging of whole cells. Recent advancements (fast 3D-SIM) in the technology increasing the capture rate of raw images allows for fast capture of biological processes occurring in seconds, while significantly reducing photo-toxicity and photobleaching. Here we describe the use of one such method to image bacterial cells harboring the fluorescently-labelled cytokinetic FtsZ protein to show how cells are analyzed and the type of unique information that this technique can provide.

  20. Super-resolution Imaging of the Cytokinetic Z Ring in Live Bacteria Using Fast 3D-Structured Illumination Microscopy (f3D-SIM)

    PubMed Central

    Liew, Andrew T. F.; Monahan, Leigh G.; Whitchurch, Cynthia B.; Harry, Elizabeth J.

    2014-01-01

    Imaging of biological samples using fluorescence microscopy has advanced substantially with new technologies to overcome the resolution barrier of the diffraction of light allowing super-resolution of live samples. There are currently three main types of super-resolution techniques – stimulated emission depletion (STED), single-molecule localization microscopy (including techniques such as PALM, STORM, and GDSIM), and structured illumination microscopy (SIM). While STED and single-molecule localization techniques show the largest increases in resolution, they have been slower to offer increased speeds of image acquisition. Three-dimensional SIM (3D-SIM) is a wide-field fluorescence microscopy technique that offers a number of advantages over both single-molecule localization and STED. Resolution is improved, with typical lateral and axial resolutions of 110 and 280 nm, respectively and depth of sampling of up to 30 µm from the coverslip, allowing for imaging of whole cells. Recent advancements (fast 3D-SIM) in the technology increasing the capture rate of raw images allows for fast capture of biological processes occurring in seconds, while significantly reducing photo-toxicity and photobleaching. Here we describe the use of one such method to image bacterial cells harboring the fluorescently-labelled cytokinetic FtsZ protein to show how cells are analyzed and the type of unique information that this technique can provide. PMID:25286090

  1. Numerical 3D models support two distinct hydrothermal circulation systems at fast spreading ridges

    NASA Astrophysics Data System (ADS)

    Hasenclever, Jörg; Theissen-Krah, Sonja; Rüpke, Lars

    2013-04-01

    We present 3D numerical calculations of hydrothermal fluid flow at fast spreading ridges. The setup of the 3D models is based our previous 2D studies, in which we have coupled numerical models for crustal accretion and hydrothermal fluid flow. One result of these calculations is a crustal permeability field that leads to a thermal structure in the crust that matches seismic tomography data of the East Pacific Rise (EPR). The 1000°C isotherm obtained from the 2D results is now used as the lower boundary of the 3D model domain, while the upper boundary is a smoothed bathymetry of the EPR. The same permeability field as in the 2D models is used, with the highest permeability at the ridge axis and a decrease with both depth and distance to the ridge. Permeability is also reduced linearly between 600 and 1000°C. Using a newly developed parallel finite element code written in Matlab that solves for thermal evolution, fluid pressure and Darcy flow, we simulate the flow patterns of hydrothermal circulation in a segment of 5000m along-axis, 10000m across-axis and up to 5000m depth. We observe two distinct hydrothermal circulation systems: An on-axis system forming a series of vents with a spacing ranging from 100 to 500m that is recharged by nearby (100-200m) downflows on both sides of the ridge axis. Simultaneously a second system with much broader extensions both laterally and vertically exists off-axis. It is recharged by fluids intruding between 1500m to 5000m off-axis and sampling both upper and lower crust. These fluids are channeled in the deepest and hottest regions with high permeability and migrate up-slope following the 600°C isotherm until reaching the edge of the melt lens. Depending on the width of the melt lens these off-axis fluids either merge with the on-axis hydrothermal system or form separate vents. We observe separate off-axis vent fields if the magma lens half-width exceeds 1000m and confluence of both systems for half-widths smaller than 500m. For

  2. Fast Bayesian whole-brain fMRI analysis with spatial 3D priors.

    PubMed

    Sidén, Per; Eklund, Anders; Bolin, David; Villani, Mattias

    2017-02-01

    Spatial whole-brain Bayesian modeling of task-related functional magnetic resonance imaging (fMRI) is a great computational challenge. Most of the currently proposed methods therefore do inference in subregions of the brain separately or do approximate inference without comparison to the true posterior distribution. A popular such method, which is now the standard method for Bayesian single subject analysis in the SPM software, is introduced in Penny et al. (2005b). The method processes the data slice-by-slice and uses an approximate variational Bayes (VB) estimation algorithm that enforces posterior independence between activity coefficients in different voxels. We introduce a fast and practical Markov chain Monte Carlo (MCMC) scheme for exact inference in the same model, both slice-wise and for the whole brain using a 3D prior on activity coefficients. The algorithm exploits sparsity and uses modern techniques for efficient sampling from high-dimensional Gaussian distributions, leading to speed-ups without which MCMC would not be a practical option. Using MCMC, we are for the first time able to evaluate the approximate VB posterior against the exact MCMC posterior, and show that VB can lead to spurious activation. In addition, we develop an improved VB method that drops the assumption of independent voxels a posteriori. This algorithm is shown to be much faster than both MCMC and the original VB for large datasets, with negligible error compared to the MCMC posterior.

  3. Fast Semantic Segmentation of 3d Point Clouds with Strongly Varying Density

    NASA Astrophysics Data System (ADS)

    Hackel, Timo; Wegner, Jan D.; Schindler, Konrad

    2016-06-01

    We describe an effective and efficient method for point-wise semantic classification of 3D point clouds. The method can handle unstructured and inhomogeneous point clouds such as those derived from static terrestrial LiDAR or photogammetric reconstruction; and it is computationally efficient, making it possible to process point clouds with many millions of points in a matter of minutes. The key issue, both to cope with strong variations in point density and to bring down computation time, turns out to be careful handling of neighborhood relations. By choosing appropriate definitions of a point's (multi-scale) neighborhood, we obtain a feature set that is both expressive and fast to compute. We evaluate our classification method both on benchmark data from a mobile mapping platform and on a variety of large, terrestrial laser scans with greatly varying point density. The proposed feature set outperforms the state of the art with respect to per-point classification accuracy, while at the same time being much faster to compute.

  4. Diagnostic Value of 3D Fast Low-Angle Shot Dynamic MRI of Breast Papillomas

    PubMed Central

    Kim, Eun-Kyung; Kim, Jeong-Ah; Kwak, Jin Young; Jeong, Joon

    2009-01-01

    Purpose To evaluate the value of breast MRI in analysis of papillomas of the breast. Materials and Methods From 1996 to 2004, 94 patients underwent surgery due to papillomas of the breast. Among them, 21 patients underwent 3D fast low angle shot (FLASH) dynamic breast MRI. Eight masses were palpable and 11 of 21 patients had nipple discharge. Two radiologists indifferently analyzed the location, size of the lesions and shape, margin of the masses, multiplicity and ductal relation. The MRI findings were categorized according to breast imaging reporting and data system (BI-RADS) lexicon. The amount and pattern of enhancement and associated findings were also evaluated according to BI-RADS. We then compared the MRI findings with galactography, mammography and breast ultrasonography (US) and examined histopathologic correlation. Results On breast MRI, the lesion size was 0.4-1.59 cm, and 18 patients showed subareolar location. On 4.25 cm (mean 1.54) dynamic enhanced images, imaging findings showed mass (n = 10), intracystic mass (n = 3), focus (n = 5), ductal enhancement (n = 2), and segmental enhancement (n = 1). In cases of the masses, the shapes of the masses were round (n = 4), lobulated (n = 3), and irregular (n = 6), and margins were circumscribed (n = 6), microlobulated (n = 5), and indistinct (n = 2). The enhancement patterns were homogeneous enhancement (n = 7), heterogeneous (n = 3) or rim enhancement (n = 3). Conclusion The contrast enhanced dynamic breast MRI was highly sensitive for diagnosis of breast papillomas. MRI could play a key role in the pre-operative work-up for multiple papillomas and papillomatosis. PMID:20046427

  5. Transient Reconnection as Observed in the Cusp by Cluster and FAST

    NASA Astrophysics Data System (ADS)

    Elphic, R. C.; Dunlop, M. W.; Balogh, A.; Cargill, P.; Glassmeier, K.; Mussmann, G.; Thomsen, M. F.; Cattell, C. A.; Fazakerly, A.; Reme, H.

    2001-12-01

    In the interval from 23:10 UT on 20 February through at least 00:30 on 21 February, 2001, Cluster was inbound crossing the southern cusp. The four spacecraft were first in a northward magnetosheath field with |B| ~ 35 - 40 nT, BZ > 0, and BY < 0. However, lagged solar wind observations from ACE reveal that the magnetosheath field turned southward just before Cluster entered the cusp, identified as a region of lower average field strength (10 - 20 nT). Then the spacecraft entered the tail lobe, with southwardly-oriented field and velocity dispersed ions traveling tailward. The cusp traversal lasted roughly 15 minutes, during which large field excursions and significant ion flow changes occurred. Three distinct southward ion flow bursts (Δ VZ ~ 130 km/s) were observed, each lasting 2 - 3 minutes, each associated with northward field excursions (Δ BZ ~ 40 nT). In the first two bursts there are also large BY variations as well. The distinctive magnetic field and ion plasma flow changes suggest that these events may be related to transient reconnection due to the new southward orientation of the IMF. Between 2310 and 2350 UT, FAST crossed from the dayside plasma sheet through boundary layer/polar cap in the early afternoon sector at altitudes between 3000 and 4000 km. Though not at the cusp, the FAST magnetic stress/ionospheric convection observations qualitatively agree with the Weimer convection model for the southward IMF conditions at this time.

  6. A fast hybrid (3-D/1-D) model for thermal radiative transfer in cirrus via successive orders of scattering

    NASA Astrophysics Data System (ADS)

    Fauchez, Thomas; Davis, Anthony B.; Cornet, Céline; Szczap, Fredéric; Platnick, Steven; Dubuisson, Philippe; Thieuleux, François

    2017-01-01

    We investigate the impact of cirrus cloud heterogeneity on the direct emission by cloud or surface and on the scattering by ice particles in the thermal infrared (TIR). Realistic 3-D cirri are modeled with the 3DCLOUD code, and top-of-atmosphere radiances are simulated by the 3-D Monte Carlo radiative transfer (RT) algorithm 3DMCPOL for two (8.65 μm and 12.05 μm) channels of the Imaging Infrared Radiometer on CALIPSO. At nadir, comparisons of 1-D and 3-D RT show that 3-D radiances are larger than their 1-D counterparts for direct emission but smaller for scattered radiation. For our cirrus cases, 99% of the 3-D total radiance is computed by the third scattering order, which corresponds to 90% of the total computational effort, but larger optical thicknesses need more scattering orders. To radically accelerate the 3-D RT computations (using only few percent of 3-D RT time with a Monte Carlo code), even in the presence of large optical depths, we develop a hybrid model based on exact 3-D direct emission, the first scattering order from 1-D in each homogenized column, and an empirical adjustment linearly dependent on the optical thickness to account for higher scattering orders. Good agreement is found between the hybrid model and the exact 3-D radiances for two very different cirrus models without changing the empirical parameters. We anticipate that a future deterministic implementation of the hybrid model will be fast enough to process multiangle thermal imagery in a practical tomographic reconstruction of 3-D cirrus fields.

  7. A Fast Hybrid (3-D/1-D) Model for Thermal Radiative Transfer in Cirrus via Successive Orders of Scattering

    NASA Technical Reports Server (NTRS)

    Fauchez, Thomas; Davis, Anthony B.; Cornet, Celine; Szczap, Frederic; Platnick, Steven; Dubuisson, Philippe; Thieuleux, Francois

    2017-01-01

    We investigate the impact of cirrus cloud heterogeneity on the direct emission by cloud or surface and on the scattering by ice particles in the thermal infrared (TIR). Realistic 3-D cirri are modeled with the 3DCLOUD code, and top-of-atmosphere radiances are simulated by the 3-D Monte Carlo radiative transfer (RT) algorithm 3DMCPOL for two (8.65 micrometers and 12.05 micrometers) channels of the Imaging Infrared Radiometer on CALIPSO. At nadir, comparisons of 1-D and 3-D RT show that 3-D radiances are larger than their 1-D counterparts for direct emission but smaller for scattered radiation. For our cirrus cases, 99% of the 3-D total radiance is computed by the third scattering order, which corresponds to 90% of the total computational effort, but larger optical thicknesses need more scattering orders. To radically accelerate the 3-D RT computations (using only few percent of 3-D RT time with a Monte Carlo code), even in the presence of large optical depths, we develop a hybrid model based on exact 3-D direct emission, the first scattering order from 1-D in each homogenized column, and an empirical adjustment linearly dependent on the optical thickness to account for higher scattering orders. Good agreement is found between the hybrid model and the exact 3-D radiances for two very different cirrus models without changing the empirical parameters. We anticipate that a future deterministic implementation of the hybrid model will be fast enough to process multiangle thermal imagery in a practical tomographic reconstruction of 3-D cirrus fields.

  8. Automated detection of planes in 3-D point clouds using fast Hough transforms

    NASA Astrophysics Data System (ADS)

    Ogundana, Olatokunbo O.; Coggrave, C. Russell; Burguete, Richard L.; Huntley, Jonathan M.

    2011-05-01

    Calibration of 3-D optical sensors often involves the use of calibration artifacts consisting of geometric features, such as 2 or more planes or spheres of known separation. In order to reduce data processing time and minimize user input during calibration, the respective features of the calibration artifact need to be automatically detected and labeled from the measured point clouds. The Hough transform (HT), which is a well-known method for line detection based on foot-of-normal parameterization, has been extended to plane detection in 3-D space. However, the typically sparse intermediate 3-D Hough accumulator space leads to excessive memory storage requirements. A 3-D HT method based on voting in an optimized sparse 3-D matrix model and efficient peak detection in Hough space is described. An alternative 1-D HT is also investigated for rapid detection of nominally parallel planes. Examples of the performance of these methods using simulated and experimental shape data are presented.

  9. ProteinVista: a fast molecular visualization system using Microsoft Direct3D.

    PubMed

    Park, Chan-Yong; Park, Sung-Hee; Park, Soo-Jun; Park, Sun-Hee; Hwang, Chi-Jung

    2008-09-01

    Many tools have been developed to visualize protein and molecular structures. Most high quality protein visualization tools use the OpenGL graphics library as a 3D graphics system. Currently, the performance of recent 3D graphics hardware has rapidly improved. Recent high-performance 3D graphics hardware support Microsoft Direct3D graphics library more than OpenGL and have become very popular in personal computers (PCs). In this paper, a molecular visualization system termed ProteinVista is proposed. ProteinVista is well-designed visualization system using the Microsoft Direct3D graphics library. It provides various visualization styles such as the wireframe, stick, ball and stick, space fill, ribbon, and surface model styles, in addition to display options for 3D visualization. As ProteinVista is optimized for recent 3D graphics hardware platforms and because it uses a geometry instancing technique, its rendering speed is 2.7 times faster compared to other visualization tools.

  10. Fast and Precise 3D Fluorophore Localization based on Gradient Fitting

    PubMed Central

    Ma, Hongqiang; Xu, Jianquan; Jin, Jingyi; Gao, Ying; Lan, Li; Liu, Yang

    2015-01-01

    Astigmatism imaging approach has been widely used to encode the fluorophore’s 3D position in single-particle tracking and super-resolution localization microscopy. Here, we present a new high-speed localization algorithm based on gradient fitting to precisely decode the 3D subpixel position of the fluorophore. This algebraic algorithm determines the center of the fluorescent emitter by finding the position with the best-fit gradient direction distribution to the measured point spread function (PSF), and can retrieve the 3D subpixel position of the fluorophore in a single iteration. Through numerical simulation and experiments with mammalian cells, we demonstrate that our algorithm yields comparable localization precision to the traditional iterative Gaussian function fitting (GF) based method, while exhibits over two orders-of-magnitude faster execution speed. Our algorithm is a promising high-speed analyzing method for 3D particle tracking and super-resolution localization microscopy. PMID:26390959

  11. Dynamic Response of Magnetic Reconnection Due to Current Sheet Variability

    NASA Astrophysics Data System (ADS)

    George, D. E.; Jahn, J. M.; Burch, J. L.; Hesse, M.; Pollock, C. J.

    2014-12-01

    Magnetic reconnection is a process which regulates the interaction between regions of magnetized plasma. While many factors have an impact on the evolution of this process, there still remains a lack of understanding of the key behaviors involved in the triggering of fast reconnection. Despite an abundance of in-situ measurements, indicating the high degree of variability in the thickness, density and composition along the current sheet, no simulation studies exist which account for such current sheet variations. 2D and 3D simulations have a periodic boundary in the dimension along the current sheet and so tend to neglect these variations in the current sheet originating external to the modeled reconnection region. Here we focus on the effects on reconnection due to the variability in the thickness and density of the current sheet. Using 2.5D kinetic simulations of 2-species plasma, we isolate and explore the dynamic effects on reconnection associated with variations in the current sheet originating externally to the reconnection region. While periodic boundary conditions are still used, in the direction along the current sheet, a step-change perturbation in thickness or density of the current sheet is introduced once a stable reconnection rate is reached. The dynamic response of the overall system, after introducing the perturbation, is then evaluated, with a focus on the reconnection rate. When the reconnection rate is slowed significantly over time, loading of the inflow region occurs (a build-up of plasma and magnetic energy/pressure. This state is indicated by an asymptotic behavior in the reconnection rate over time. If a sudden variation in the current sheet is introduced under these conditions, a resultant triggering of fast reconnection may occur, which could lead to an episode of fast reconnection, saw-tooth-crash condition or even act as a trigger for sub-storms.

  12. A fast 3D region growing approach for CT angiography applications

    NASA Astrophysics Data System (ADS)

    Ye, Zhen; Lin, Zhongmin; Lu, Cheng-chang

    2004-05-01

    Region growing is one of the most popular methods for low-level image segmentation. Many researches on region growing have focused on the definition of the homogeneity criterion or growing and merging criterion. However, one disadvantage of conventional region growing is redundancy. It requires a large memory usage, and the computation-efficiency is very low especially for 3D images. To overcome this problem, a non-recursive single-pass 3D region growing algorithm named SymRG is implemented and successfully applied to 3D CT angiography (CTA) applications for vessel segmentation and bone removal. The method consists of three steps: segmenting one-dimensional regions of each row; doing region merging to adjacent rows to obtain the region segmentation of each slice; and doing region merging to adjacent slices to obtain the final region segmentation of 3D images. To improve the segmentation speed for very large volume 3D CTA images, this algorithm is applied repeatedly to newly updated local cubes. The next new cube can be estimated by checking isolated segmented regions on all 6 faces of the current local cube. This local non-recursive 3D region-growing algorithm is memory-efficient and computation-efficient. Clinical testings of this algorithm on Brain CTA show this technique could effectively remove whole skull, most of the bones on the skull base, and reveal the cerebral vascular structures clearly.

  13. Development of a fast EUV movie camera for study of magnetic reconnection in magnetically driven plasma jets

    NASA Astrophysics Data System (ADS)

    Chai, Kil-Byoung; Bellan, Paul

    2012-10-01

    The Caltech MHD driven jet experiment involves a low temperature (˜5 eV) and high density (˜10^21 m-3) plasma that travels at 10's of km/s. During and after formation, magnetic reconnections are observed together with kink and Rayleigh-Taylor instabilities [1]. It has also been observed that there are highly transient EUV emissions when there is magnetic reconnection. The first EUV peak occurs when flux tubes merge during formation and the second one occurs when a Rayleigh-Taylor instability causes the jet to break off from its source electrode. It would be helpful for understanding magnetic reconnection to investigate the spatial and temporal behaviors of these EUV bursts associated with magnetic reconnection. In order to achieve this, we are developing a high speed EUV movie camera. It consists of an Al coated YAG:Ce scintillator, an Au parabolic mirror (or a multilayer coated mirror for a specific EUV wavelength) and a fast framing camera (2x10^8 fps). We tested our system using visible light from the actual plasma jet and obtained image sequence with submicron time resolution.[4pt] [1] A. L. Moser and P. M. Bellan, Nature 482, 379 (2012).

  14. Self-generated Turbulence in Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Oishi, Jeffrey S.; Mac Low, Mordecai-Mark; Collins, David C.; Tamura, Moeko

    2015-06-01

    Classical Sweet-Parker models of reconnection predict that reconnection rates depend inversely on the resistivity, usually parameterized using the dimensionless Lundquist number (S). We describe magnetohydrodynamic (MHD) simulations using a static, nested grid that show the development of a three-dimensional (3D) instability in the plane of a current sheet between reversing field lines without a guide field. The instability leads to rapid reconnection of magnetic field lines at a rate independent of S over at least the range 3.2× {{10}3}≲ S≲ 3.2× {{10}5} resolved by the simulations. We find that this instability occurs even for cases with S≲ {{10}4} that in our models appear stable to the recently described, two-dimensional, plasmoid instability. Our results suggest that 3D, MHD processes alone produce fast (resistivity independent) reconnection without recourse to kinetic effects or external turbulence. The unstable reconnection layers provide a self-consistent environment in which the extensively studied turbulent reconnection process can occur.

  15. Magnetic Reconnection

    SciTech Connect

    Masaaki Yamada, Russell Kulsrud and Hantao Ji

    2009-09-17

    We review the fundamental physics of magnetic reconnection in laboratory and space plasmas, by discussing results from theory, numerical simulations, observations from space satellites, and the recent results from laboratory plasma experiments. After a brief review of the well-known early work, we discuss representative recent experimental and theoretical work and attempt to interpret the essence of significant modern findings. In the area of local reconnection physics, many significant findings have been made with regard to two- uid physics and are related to the cause of fast reconnection. Profiles of the neutral sheet, Hall currents, and the effects of guide field, collisions, and micro-turbulence are discussed to understand the fundamental processes in a local reconnection layer both in space and laboratory plasmas. While the understanding of the global reconnection dynamics is less developed, notable findings have been made on this issue through detailed documentation of magnetic self-organization phenomena in fusion plasmas. Application of magnetic reconnection physics to astrophysical plasmas is also brie y discussed.

  16. Tunable nonuniform sampling method for fast calculation and intensity modulation in 3D dynamic holographic display.

    PubMed

    Zhang, Zhao; Liu, Juan; Jia, Jia; Li, Xin; Han, Jian; Hu, Bin; Wang, Yongtian

    2013-08-01

    Heavy computational load of computer-generated hologram (CGH) and imprecise intensity modulation of 3D images are crucial problems in dynamic holographic display. The nonuniform sampling method is proposed to speed up CGH generation and precisely modulate the reconstructed intensities of phase-only CGH. The proposed method can eliminate the redundant information properly, where 70% reduction in the storage amount can be reached when it is combined with the novel lookup table method. Multigrayscale modulation of reconstructed 3D images can be achieved successfully. Numerical simulations and optical experiments are performed, and both are in good agreement. It is believed that the proposed method can be used in 3D dynamic holographic display.

  17. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging

    PubMed Central

    Boulanger, Jérôme; Gueudry, Charles; Münch, Daniel; Cinquin, Bertrand; Paul-Gilloteaux, Perrine; Bardin, Sabine; Guérin, Christophe; Senger, Fabrice; Blanchoin, Laurent; Salamero, Jean

    2014-01-01

    Total internal reflection fluorescence microscopy (TIRFM) is the method of choice to visualize a variety of cellular processes in particular events localized near the plasma membrane of live adherent cells. This imaging technique not relying on particular fluorescent probes provides a high sectioning capability. It is, however, restricted to a single plane. We present here a method based on a versatile design enabling fast multiwavelength azimuthal averaging and incidence angles scanning to computationally reconstruct 3D images sequences. We achieve unprecedented 50-nm axial resolution over a range of 800 nm above the coverslip. We apply this imaging modality to obtain structural and dynamical information about 3D actin architectures. We also temporally decipher distinct Rab11a-dependent exocytosis events in 3D at a rate of seven stacks per second. PMID:25404337

  18. Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging.

    PubMed

    Boulanger, Jérôme; Gueudry, Charles; Münch, Daniel; Cinquin, Bertrand; Paul-Gilloteaux, Perrine; Bardin, Sabine; Guérin, Christophe; Senger, Fabrice; Blanchoin, Laurent; Salamero, Jean

    2014-12-02

    Total internal reflection fluorescence microscopy (TIRFM) is the method of choice to visualize a variety of cellular processes in particular events localized near the plasma membrane of live adherent cells. This imaging technique not relying on particular fluorescent probes provides a high sectioning capability. It is, however, restricted to a single plane. We present here a method based on a versatile design enabling fast multiwavelength azimuthal averaging and incidence angles scanning to computationally reconstruct 3D images sequences. We achieve unprecedented 50-nm axial resolution over a range of 800 nm above the coverslip. We apply this imaging modality to obtain structural and dynamical information about 3D actin architectures. We also temporally decipher distinct Rab11a-dependent exocytosis events in 3D at a rate of seven stacks per second.

  19. A fast rebinning algorithm for 3D positron emission tomography using John's equation

    NASA Astrophysics Data System (ADS)

    Defrise, Michel; Liu, Xuan

    1999-08-01

    Volume imaging in positron emission tomography (PET) requires the inversion of the three-dimensional (3D) x-ray transform. The usual solution to this problem is based on 3D filtered-backprojection (FBP), but is slow. Alternative methods have been proposed which factor the 3D data into independent 2D data sets corresponding to the 2D Radon transforms of a stack of parallel slices. Each slice is then reconstructed using 2D FBP. These so-called rebinning methods are numerically efficient but are approximate. In this paper a new exact rebinning method is derived by exploiting the fact that the 3D x-ray transform of a function is the solution to the second-order partial differential equation first studied by John. The method is proposed for two sampling schemes, one corresponding to a pair of infinite plane detectors and another one corresponding to a cylindrical multi-ring PET scanner. The new FORE-J algorithm has been implemented for this latter geometry and was compared with the approximate Fourier rebinning algorithm FORE and with another exact rebinning algorithm, FOREX. Results with simulated data demonstrate a significant improvement in accuracy compared to FORE, while the reconstruction time is doubled. Compared to FOREX, the FORE-J algorithm is slightly less accurate but more than three times faster.

  20. Numerical evidence of undriven, fast reconnection in the solar-wind interaction with earth's magnetosphere: formation of electromagnetic coherent structures.

    PubMed

    Faganello, M; Califano, F; Pegoraro, F

    2008-09-05

    We give evidence for the first time of the onset of undriven fast, collisionless magnetic reconnection during the evolution of an initially homogeneous magnetic field advected in a sheared velocity field. We consider the interaction of the solar wind with the magnetospheric plasma at low latitude and show that reconnection takes place in the layer between adjacent vortices generated by the Kelvin-Helmholtz instability. This process generates coherent magnetic structures with a size comparable to the ion inertial scale, much smaller than the system dimensions but much larger than the electron inertial scale. These magnetic structures are further advected in the plasma in a complex pattern but remain stable over a time interval much longer than their formation time. These results can be crucial for the interpretation of satellite data showing coherent magnetic structures in the Earth's magnetosheath or the magnetotail.

  1. Experimental demonstration of the role of electron pressure in fast magnetic reconnection with a guide field

    NASA Astrophysics Data System (ADS)

    Fox, W.; Sciortino, F.; von Stechow, A.; Jara-Almonte, J.; Yoo, J.; Ji, H.; Yamada, M.

    2016-10-01

    We report detailed laboratory observations of the structure of reconnection current sheets in a two-fluid plasma regime with a guide magnetic field, conducted on the Magnetic Reconnection Experiment. We observe in the laboratory for the first time the quadrupolar electron pressure variation in the ion-diffusion region, as originally predicted by extended MHD simulation. We quantitatively analyze the parallel and perpendicular force balance, and observe the projection of the electron pressure gradient parallel to the B field balances the parallel electric field. The resulting cross-field electron jets in the reconnection layer are diamagnetic in origin. Electron density variations are observed to dominate temperature variations and may provide a new diagnostic of reconnection with finite guide field for fusion experiments and spacecraft missions. Supported by Max-Planck Princeton Center for Plasma Physics.

  2. Properties of the first-order Fermi acceleration in fast magnetic reconnection driven by turbulence in collisional magnetohydrodynamical flows

    NASA Astrophysics Data System (ADS)

    del Valle, Maria V.; de Gouveia Dal Pino, E. M.; Kowal, G.

    2016-12-01

    Fast magnetic reconnection can occur in different astrophysical sources, producing flare-like emission and particle acceleration. Currently, this process is being studied as an efficient mechanism to accelerate particles via a first-order Fermi process. In this paper, we analyse the acceleration rate and the energy distribution of test particles injected into three-dimensional magnetohydrodynamical (MHD) domains with large-scale current sheets where reconnection is made fast by the presence of turbulence. We study the dependence of the particle acceleration time with the relevant parameters of the embedded turbulence: the Alfvén speed VA, the injection power Pinj and scale kinj (kinj = 1/linj). We find that the acceleration time follows a power-law dependence with the particle kinetic energy: tacc ∝ Eα, with 0.2 < α < 0.6 for a vast range of values of c/VA ˜ 20-1000. The acceleration time decreases with the Alfvén speed (and therefore with the reconnection velocity) as expected, having an approximate dependence tacc ∝ (VA/c)-κ, with κ ˜ 2.1-2.4 for particles reaching kinetic energies between 1 and 100 mpc2, respectively. Furthermore, we find that the acceleration time is only weakly dependent on the Pinj and linj parameters of the turbulence. The particle spectrum develops a high-energy tail, which can be fitted by a hard power law already in the early times of the acceleration, consistent with the results of kinetic studies of particle acceleration by magnetic reconnection in collisionless plasmas.

  3. Fast magnetic reconnection in low-density electron-positron plasmas

    SciTech Connect

    Bessho, Naoki; Bhattacharjee, A.

    2010-10-15

    Two-dimensional particle-in-cell simulations have been performed to study magnetic reconnection in low-density electron-positron plasmas without a guide magnetic field. Impulsive reconnection rates become of the order of unity when the background density is much smaller than 10% of the density in the initial current layer. It is demonstrated that the outflow speed is less than the upstream Alfven speed, and that the time derivative of the density must be taken into account in the definition of the reconnection rate. The reconnection electric fields in the low-density regime become much larger than the ones in the high-density regime, and it is possible to accelerate the particles to high energies more efficiently. The inertial term in the generalized Ohm's law is the most dominant term that supports a large reconnection electric field. An effective collisionless resistivity is produced and tracks the extension of the diffusion region in the late stage of the reconnection dynamics, and significant broadening of the diffusion region is observed. Because of the broadening of the diffusion region, no secondary islands, which have been considered to play a role to limit the diffusion region, are generated during the extension of the diffusion region in the outflow direction.

  4. A fast and accurate method to predict 2D and 3D aerodynamic boundary layer flows

    NASA Astrophysics Data System (ADS)

    Bijleveld, H. A.; Veldman, A. E. P.

    2014-12-01

    A quasi-simultaneous interaction method is applied to predict 2D and 3D aerodynamic flows. This method is suitable for offshore wind turbine design software as it is a very accurate and computationally reasonably cheap method. This study shows the results for a NACA 0012 airfoil. The two applied solvers converge to the experimental values when the grid is refined. We also show that in separation the eigenvalues remain positive thus avoiding the Goldstein singularity at separation. In 3D we show a flow over a dent in which separation occurs. A rotating flat plat is used to show the applicability of the method for rotating flows. The shown capabilities of the method indicate that the quasi-simultaneous interaction method is suitable for design methods for offshore wind turbine blades.

  5. Combining scale-space and similarity-based aspect graphs for fast 3D object recognition.

    PubMed

    Ulrich, Markus; Wiedemann, Christian; Steger, Carsten

    2012-10-01

    This paper describes an approach for recognizing instances of a 3D object in a single camera image and for determining their 3D poses. A hierarchical model is generated solely based on the geometry information of a 3D CAD model of the object. The approach does not rely on texture or reflectance information of the object's surface, making it useful for a wide range of industrial and robotic applications, e.g., bin-picking. A hierarchical view-based approach that addresses typical problems of previous methods is applied: It handles true perspective, is robust to noise, occlusions, and clutter to an extent that is sufficient for many practical applications, and is invariant to contrast changes. For the generation of this hierarchical model, a new model image generation technique by which scale-space effects can be taken into account is presented. The necessary object views are derived using a similarity-based aspect graph. The high robustness of an exhaustive search is combined with an efficient hierarchical search. The 3D pose is refined by using a least-squares adjustment that minimizes geometric distances in the image, yielding a position accuracy of up to 0.12 percent with respect to the object distance, and an orientation accuracy of up to 0.35 degree in our tests. The recognition time is largely independent of the complexity of the object, but depends mainly on the range of poses within which the object may appear in front of the camera. For efficiency reasons, the approach allows the restriction of the pose range depending on the application. Typical runtimes are in the range of a few hundred ms.

  6. WaveQ3D: Fast and accurate acoustic transmission loss (TL) eigenrays, in littoral environments

    NASA Astrophysics Data System (ADS)

    Reilly, Sean M.

    This study defines a new 3D Gaussian ray bundling acoustic transmission loss model in geodetic coordinates: latitude, longitude, and altitude. This approach is designed to lower the computation burden of computing accurate environmental effects in sonar training application by eliminating the need to transform the ocean environment into a collection of Nx2D Cartesian radials. This approach also improves model accuracy by incorporating real world 3D effects, like horizontal refraction, into the model. This study starts with derivations for a 3D variant of Gaussian ray bundles in this coordinate system. To verify the accuracy of this approach, acoustic propagation predictions of transmission loss, time of arrival, and propagation direction are compared to analytic solutions and other models. To validate the model's ability to predict real world phenomena, predictions of transmission loss and propagation direction are compared to at-sea measurements, in an environment where strong horizontal refraction effect have been observed. This model has been integrated into U.S. Navy active sonar training system applications, where testing has demonstrated its ability to improve transmission loss calculation speed without sacrificing accuracy.

  7. Fast myocardial strain estimation from 3D ultrasound through elastic image registration with analytic regularization

    NASA Astrophysics Data System (ADS)

    Chakraborty, Bidisha; Heyde, Brecht; Alessandrini, Martino; D'hooge, Jan

    2016-04-01

    Image registration techniques using free-form deformation models have shown promising results for 3D myocardial strain estimation from ultrasound. However, the use of this technique has mostly been limited to research institutes due to the high computational demand, which is primarily due to the computational load of the regularization term ensuring spatially smooth cardiac strain estimates. Indeed, this term typically requires evaluating derivatives of the transformation field numerically in each voxel of the image during every iteration of the optimization process. In this paper, we replace this time-consuming step with a closed-form solution directly associated with the transformation field resulting in a speed up factor of ~10-60,000, for a typical 3D B-mode image of 2503 and 5003 voxels, depending upon the size and the parametrization of the transformation field. The performance of the numeric and the analytic solutions was contrasted by computing tracking and strain accuracy on two realistic synthetic 3D cardiac ultrasound sequences, mimicking two ischemic motion patterns. Mean and standard deviation of the displacement errors over the cardiac cycle for the numeric and analytic solutions were 0.68+/-0.40 mm and 0.75+/-0.43 mm respectively. Correlations for the radial, longitudinal and circumferential strain components at end-systole were 0.89, 0.83 and 0.95 versus 0.90, 0.88 and 0.92 for the numeric and analytic regularization respectively. The analytic solution matched the performance of the numeric solution as no statistically significant differences (p>0.05) were found when expressed in terms of bias or limits-of-agreement.

  8. Combining depth and gray images for fast 3D object recognition

    NASA Astrophysics Data System (ADS)

    Pan, Wang; Zhu, Feng; Hao, Yingming

    2016-10-01

    Reliable and stable visual perception systems are needed for humanoid robotic assistants to perform complex grasping and manipulation tasks. The recognition of the object and its precise 6D pose are required. This paper addresses the challenge of detecting and positioning a textureless known object, by estimating its complete 6D pose in cluttered scenes. A 3D perception system is proposed in this paper, which can robustly recognize CAD models in cluttered scenes for the purpose of grasping with a mobile manipulator. Our approach uses a powerful combination of two different camera technologies, Time-Of-Flight (TOF) and RGB, to segment the scene and extract objects. Combining the depth image and gray image to recognize instances of a 3D object in the world and estimate their 3D poses. The full pose estimation process is based on depth images segmentation and an efficient shape-based matching. At first, the depth image is used to separate the supporting plane of objects from the cluttered background. Thus, cluttered backgrounds are circumvented and the search space is extremely reduced. And a hierarchical model based on the geometry information of a priori CAD model of the object is generated in the offline stage. Then using the hierarchical model we perform a shape-based matching in 2D gray images. Finally, we validate the proposed method in a number of experiments. The results show that utilizing depth and gray images together can reach the demand of a time-critical application and reduce the error rate of object recognition significantly.

  9. Atlas Toolkit: Fast registration of 3D morphological datasets in the absence of landmarks

    PubMed Central

    Grocott, Timothy; Thomas, Paul; Münsterberg, Andrea E.

    2016-01-01

    Image registration is a gateway technology for Developmental Systems Biology, enabling computational analysis of related datasets within a shared coordinate system. Many registration tools rely on landmarks to ensure that datasets are correctly aligned; yet suitable landmarks are not present in many datasets. Atlas Toolkit is a Fiji/ImageJ plugin collection offering elastic group-wise registration of 3D morphological datasets, guided by segmentation of the interesting morphology. We demonstrate the method by combinatorial mapping of cell signalling events in the developing eyes of chick embryos, and use the integrated datasets to predictively enumerate Gene Regulatory Network states. PMID:26864723

  10. Nonlinear dynamics of 3D beams of fast magnetosonic waves propagating in the ionospheric and magnetospheric plasma

    NASA Astrophysics Data System (ADS)

    Belashov, V. Yu.; Belashova, E. S.

    2016-11-01

    On the basis of the model of the three-dimensional (3D) generalized Kadomtsev-Petviashvili equation for magnetic field h = B / B the formation, stability, and dynamics of 3D soliton-like structures, such as the beams of fast magnetosonic (FMS) waves generated in ionospheric and magnetospheric plasma at a low-frequency branch of oscillations when β = 4 πnT/ B 2 ≪ 1 and β > 1, are studied. The study takes into account the highest dispersion correction determined by values of the plasma parameters and the angle θ = ( B, k), which plays a key role in the FMS beam propagation at those angles to the magnetic field that are close to π/2. The stability of multidimensional solutions is studied by an investigation of the Hamiltonian boundness under its deformations on the basis of solving of the corresponding variational problem. The evolution and dynamics of the 3D FMS wave beam are studied by the numerical integration of equations with the use of specially developed methods. The results can be interpreted in terms of the self-focusing phenomenon, as the formation of a stationary beam and the scattering and self-focusing of the solitary beam of FMS waves. These cases were studied with a detailed investigation of all evolutionary stages of the 3D FMS wave beams in the ionospheric and magnetospheric plasma.

  11. Contrast-Based 3D/2D Registration of the Left Atrium: Fast versus Consistent.

    PubMed

    Hoffmann, Matthias; Kowalewski, Christopher; Maier, Andreas; Kurzidim, Klaus; Strobel, Norbert; Hornegger, Joachim

    2016-01-01

    For augmented fluoroscopy during cardiac ablation, a preoperatively acquired 3D model of a patient's left atrium (LA) can be registered to X-ray images recorded during a contrast agent (CA) injection. An automatic registration method that works also for small amounts of CA is desired. We propose two similarity measures: The first focuses on edges of the patient anatomy. The second computes a contrast agent distribution estimate (CADE) inside the 3D model and rates its consistency with the CA as seen in biplane fluoroscopic images. Moreover, temporal filtering on the obtained registration results of a sequence is applied using a Markov chain framework. Evaluation was performed on 11 well-contrasted clinical angiographic sequences and 10 additional sequences with less CA. For well-contrasted sequences, the error for all 73 frames was 7.9 ± 6.3 mm and it dropped to 4.6 ± 4.0 mm when registering to an automatically selected, well enhanced frame in each sequence. Temporal filtering reduced the error for all frames from 7.9 ± 6.3 mm to 5.7 ± 4.6 mm. The error was typically higher if less CA was used. A combination of both similarity measures outperforms a previously proposed similarity measure. The mean accuracy for well contrasted sequences is in the range of other proposed manual registration methods.

  12. Contrast-Based 3D/2D Registration of the Left Atrium: Fast versus Consistent

    PubMed Central

    Kowalewski, Christopher; Kurzidim, Klaus; Strobel, Norbert; Hornegger, Joachim

    2016-01-01

    For augmented fluoroscopy during cardiac ablation, a preoperatively acquired 3D model of a patient's left atrium (LA) can be registered to X-ray images recorded during a contrast agent (CA) injection. An automatic registration method that works also for small amounts of CA is desired. We propose two similarity measures: The first focuses on edges of the patient anatomy. The second computes a contrast agent distribution estimate (CADE) inside the 3D model and rates its consistency with the CA as seen in biplane fluoroscopic images. Moreover, temporal filtering on the obtained registration results of a sequence is applied using a Markov chain framework. Evaluation was performed on 11 well-contrasted clinical angiographic sequences and 10 additional sequences with less CA. For well-contrasted sequences, the error for all 73 frames was 7.9 ± 6.3 mm and it dropped to 4.6 ± 4.0 mm when registering to an automatically selected, well enhanced frame in each sequence. Temporal filtering reduced the error for all frames from 7.9 ± 6.3 mm to 5.7 ± 4.6 mm. The error was typically higher if less CA was used. A combination of both similarity measures outperforms a previously proposed similarity measure. The mean accuracy for well contrasted sequences is in the range of other proposed manual registration methods. PMID:27051412

  13. Very fast road database verification using textured 3D city models obtained from airborne imagery

    NASA Astrophysics Data System (ADS)

    Bulatov, Dimitri; Ziems, Marcel; Rottensteiner, Franz; Pohl, Melanie

    2014-10-01

    Road databases are known to be an important part of any geodata infrastructure, e.g. as the basis for urban planning or emergency services. Updating road databases for crisis events must be performed quickly and with the highest possible degree of automation. We present a semi-automatic algorithm for road verification using textured 3D city models, starting from aerial or even UAV-images. This algorithm contains two processes, which exchange input and output, but basically run independently from each other. These processes are textured urban terrain reconstruction and road verification. The first process contains a dense photogrammetric reconstruction of 3D geometry of the scene using depth maps. The second process is our core procedure, since it contains various methods for road verification. Each method represents a unique road model and a specific strategy, and thus is able to deal with a specific type of roads. Each method is designed to provide two probability distributions, where the first describes the state of a road object (correct, incorrect), and the second describes the state of its underlying road model (applicable, not applicable). Based on the Dempster-Shafer Theory, both distributions are mapped to a single distribution that refers to three states: correct, incorrect, and unknown. With respect to the interaction of both processes, the normalized elevation map and the digital orthophoto generated during 3D reconstruction are the necessary input - together with initial road database entries - for the road verification process. If the entries of the database are too obsolete or not available at all, sensor data evaluation enables classification of the road pixels of the elevation map followed by road map extraction by means of vectorization and filtering of the geometrically and topologically inconsistent objects. Depending on the time issue and availability of a geo-database for buildings, the urban terrain reconstruction procedure has semantic models

  14. Fast 3D Focusing Inversion of Gravity Data Using Reweighted Regularized Lanczos Bidiagonalization Method

    NASA Astrophysics Data System (ADS)

    Rezaie, Mohammad; Moradzadeh, Ali; Kalate, Ali Nejati; Aghajani, Hamid

    2017-01-01

    Inversion of gravity data is one of the important steps in the interpretation of practical data. One of the most interesting geological frameworks for gravity data inversion is the detection of sharp boundaries between orebody and host rocks. The focusing inversion is able to reconstruct a sharp image of the geological target. This technique can be efficiently applied for the quantitative interpretation of gravity data. In this study, a new reweighted regularized method for the 3D focusing inversion technique based on Lanczos bidiagonalization method is developed. The inversion results of synthetic data show that the new method is faster than common reweighted regularized conjugate gradient method to produce an acceptable solution for focusing inverse problem. The new developed inversion scheme is also applied for inversion of the gravity data collected over the San Nicolas Cu-Zn orebody in Zacatecas State, Mexico. The inversion results indicate a remarkable correlation with the true structure of the orebody that is achieved from drilling data.

  15. Fast generation of virtual X-ray images for reconstruction of 3D anatomy.

    PubMed

    Ehlke, Moritz; Ramm, Heiko; Lamecker, Hans; Hege, Hans-Christian; Zachow, Stefan

    2013-12-01

    We propose a novel GPU-based approach to render virtual X-ray projections of deformable tetrahedral meshes. These meshes represent the shape and the internal density distribution of a particular anatomical structure and are derived from statistical shape and intensity models (SSIMs). We apply our method to improve the geometric reconstruction of 3D anatomy (e.g. pelvic bone) from 2D X-ray images. For that purpose, shape and density of a tetrahedral mesh are varied and virtual X-ray projections are generated within an optimization process until the similarity between the computed virtual X-ray and the respective anatomy depicted in a given clinical X-ray is maximized. The OpenGL implementation presented in this work deforms and projects tetrahedral meshes of high resolution (200.000+ tetrahedra) at interactive rates. It generates virtual X-rays that accurately depict the density distribution of an anatomy of interest. Compared to existing methods that accumulate X-ray attenuation in deformable meshes, our novel approach significantly boosts the deformation/projection performance. The proposed projection algorithm scales better with respect to mesh resolution and complexity of the density distribution, and the combined deformation and projection on the GPU scales better with respect to the number of deformation parameters. The gain in performance allows for a larger number of cycles in the optimization process. Consequently, it reduces the risk of being stuck in a local optimum. We believe that our approach will improve treatments in orthopedics, where 3D anatomical information is essential.

  16. Fast DRR generation for 2D to 3D registration on GPUs

    SciTech Connect

    Tornai, Gabor Janos; Cserey, Gyoergy

    2012-08-15

    Purpose: The generation of digitally reconstructed radiographs (DRRs) is the most time consuming step on the CPU in intensity based two-dimensional x-ray to three-dimensional (CT or 3D rotational x-ray) medical image registration, which has application in several image guided interventions. This work presents optimized DRR rendering on graphical processor units (GPUs) and compares performance achievable on four commercially available devices. Methods: A ray-cast based DRR rendering was implemented for a 512 Multiplication-Sign 512 Multiplication-Sign 72 CT volume. The block size parameter was optimized for four different GPUs for a region of interest (ROI) of 400 Multiplication-Sign 225 pixels with different sampling ratios (1.1%-9.1% and 100%). Performance was statistically evaluated and compared for the four GPUs. The method and the block size dependence were validated on the latest GPU for several parameter settings with a public gold standard dataset (512 Multiplication-Sign 512 Multiplication-Sign 825 CT) for registration purposes. Results: Depending on the GPU, the full ROI is rendered in 2.7-5.2 ms. If sampling ratio of 1.1%-9.1% is applied, execution time is in the range of 0.3-7.3 ms. On all GPUs, the mean of the execution time increased linearly with respect to the number of pixels if sampling was used. Conclusions: The presented results outperform other results from the literature. This indicates that automatic 2D to 3D registration, which typically requires a couple of hundred DRR renderings to converge, can be performed quasi on-line, in less than a second or depending on the application and hardware in less than a couple of seconds. Accordingly, a whole new field of applications is opened for image guided interventions, where the registration is continuously performed to match the real-time x-ray.

  17. A fast technique applied to the analysis of Resistive Wall Modes with 3D conducting structures

    SciTech Connect

    Rubinacci, Guglielmo Liu, Yueqiang

    2009-03-20

    This paper illustrates the development of a 'fast' technique for the analysis of Resistive Wall Modes (RWMs) in fusion devices with three-dimensional conducting structures, by means of the recently developed CarMa code. Thanks to its peculiar features, the computational cost scales almost linearly with the number of discrete unknowns. Some large scale problems are solved in configurations of interest for the International Thermonuclear Experimental Reactor (ITER)

  18. Mapping of the spontaneous deletion in the Ap3d1 gene of mocha mice: fast and reliable genotyping

    PubMed Central

    Drasbek, Kim Ryun; Holm, Mai Marie; Delenclos, Marion; Jensen, Kimmo

    2008-01-01

    Background The mocha mouse carries a spontaneous deletion in the Ap3d1 gene, encoding the delta 1 subunit of the adaptor related protein complex 3, (Ap3d1), and subsequently lack the expression of functional AP-3. This leads to a deficiency in vesicle transport and storage, which affects neurotransmitter vesicle turnover and release in the central nervous system. Since the genomic sequence of the Ap3d1 gene of mocha mouse is not known, precise mapping of the deletion as well as reliable genotyping protocols are lacking. Findings We sequenced the Ap3d1 gene (HGNC GeneID: 8943) around the deletion site in the mocha mouse and revealed a 10639 bp deletion covering exon 2 to 6. Subsequently, new PCR primers were designed yielding a reliable genotyping protocol of both newborn and adult tissue. To examine the genotypes further, hippocampal neurons were cultured from mocha and control mice. Patch-clamp recordings showed that mocha neurons had a higher input resistance, and that autaptic EPSC in mocha cultures depressed faster and stronger as compared with control cultures. Conclusion Our study reports the sequence of the deleted part of the Ap3d1 gene in mocha mice, as well as a reliable PCR-based genotyping protocol. We cultured hippocampal neurons from control and mocha mice, and found a difference in input resistance of the neurons, and in the synaptic short-term plasticity of glutamatergic autapses showing a larger synaptic depression than controls. The described procedures may be useful for the future utilization of the mocha mouse as a model of defective vesicle biogenesis. Importantly, as genotyping by eye color is complicated in newborn mice, the designed protocol is so fast and reliable that newborn mice could rapidly be genotyped and hippocampal neurons dissociated and cultured, which is normally best done at P0-P2. PMID:19032734

  19. A fast 3-D object recognition algorithm for the vision system of a special-purpose dexterous manipulator

    NASA Technical Reports Server (NTRS)

    Hung, Stephen H. Y.

    1989-01-01

    A fast 3-D object recognition algorithm that can be used as a quick-look subsystem to the vision system for the Special-Purpose Dexterous Manipulator (SPDM) is described. Global features that can be easily computed from range data are used to characterize the images of a viewer-centered model of an object. This algorithm will speed up the processing by eliminating the low level processing whenever possible. It may identify the object, reject a set of bad data in the early stage, or create a better environment for a more powerful algorithm to carry the work further.

  20. Fast, automatic, and accurate catheter reconstruction in HDR brachytherapy using an electromagnetic 3D tracking system

    SciTech Connect

    Poulin, Eric; Racine, Emmanuel; Beaulieu, Luc; Binnekamp, Dirk

    2015-03-15

    Purpose: In high dose rate brachytherapy (HDR-B), current catheter reconstruction protocols are relatively slow and error prone. The purpose of this technical note is to evaluate the accuracy and the robustness of an electromagnetic (EM) tracking system for automated and real-time catheter reconstruction. Methods: For this preclinical study, a total of ten catheters were inserted in gelatin phantoms with different trajectories. Catheters were reconstructed using a 18G biopsy needle, used as an EM stylet and equipped with a miniaturized sensor, and the second generation Aurora{sup ®} Planar Field Generator from Northern Digital Inc. The Aurora EM system provides position and orientation value with precisions of 0.7 mm and 0.2°, respectively. Phantoms were also scanned using a μCT (GE Healthcare) and Philips Big Bore clinical computed tomography (CT) system with a spatial resolution of 89 μm and 2 mm, respectively. Reconstructions using the EM stylet were compared to μCT and CT. To assess the robustness of the EM reconstruction, five catheters were reconstructed twice and compared. Results: Reconstruction time for one catheter was 10 s, leading to a total reconstruction time inferior to 3 min for a typical 17-catheter implant. When compared to the μCT, the mean EM tip identification error was 0.69 ± 0.29 mm while the CT error was 1.08 ± 0.67 mm. The mean 3D distance error was found to be 0.66 ± 0.33 mm and 1.08 ± 0.72 mm for the EM and CT, respectively. EM 3D catheter trajectories were found to be more accurate. A maximum difference of less than 0.6 mm was found between successive EM reconstructions. Conclusions: The EM reconstruction was found to be more accurate and precise than the conventional methods used for catheter reconstruction in HDR-B. This approach can be applied to any type of catheters and applicators.

  1. Fast 3D elastic micro-seismic source location using new GPU features

    NASA Astrophysics Data System (ADS)

    Xue, Qingfeng; Wang, Yibo; Chang, Xu

    2016-12-01

    In this paper, we describe new GPU features and their applications in passive seismic - micro-seismic location. Locating micro-seismic events is quite important in seismic exploration, especially when searching for unconventional oil and gas resources. Different from the traditional ray-based methods, the wave equation method, such as the method we use in our paper, has a remarkable advantage in adapting to low signal-to-noise ratio conditions and does not need a person to select the data. However, because it has a conspicuous deficiency due to its computation cost, these methods are not widely used in industrial fields. To make the method useful, we implement imaging-like wave equation micro-seismic location in a 3D elastic media and use GPU to accelerate our algorithm. We also introduce some new GPU features into the implementation to solve the data transfer and GPU utilization problems. Numerical and field data experiments show that our method can achieve a more than 30% performance improvement in GPU implementation just by using these new features.

  2. Development of a 3D numerical methodology for fast prediction of gun blast induced loading

    NASA Astrophysics Data System (ADS)

    Costa, E.; Lagasco, F.

    2014-05-01

    In this paper, the development of a methodology based on semi-empirical models from the literature to carry out 3D prediction of pressure loading on surfaces adjacent to a weapon system during firing is presented. This loading is consequent to the impact of the blast wave generated by the projectile exiting the muzzle bore. When exceeding a pressure threshold level, loading is potentially capable to induce unwanted damage to nearby hard structures as well as frangible panels or electronic equipment. The implemented model shows the ability to quickly predict the distribution of the blast wave parameters over three-dimensional complex geometry surfaces when the weapon design and emplacement data as well as propellant and projectile characteristics are available. Considering these capabilities, the use of the proposed methodology is envisaged as desirable in the preliminary design phase of the combat system to predict adverse effects and then enable to identify the most appropriate countermeasures. By providing a preliminary but sensitive estimate of the operative environmental loading, this numerical means represents a good alternative to more powerful, but time consuming advanced computational fluid dynamics tools, which use can, thus, be limited to the final phase of the design.

  3. Observations and models of magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Barta, Miroslav

    2015-08-01

    Magnetic reconnection is now almost unanimously considered to be a key plasma process for energy release in solar and stellar flares. Recent decade have seen rapid development in the theory, simulations and searching for observational evidences of magnetic reconnection being in action in the core of flares. Modern modeling approach involves many realistic aspects of magnetic reconnection such as intrinsically 3D nature of the process and, namely, its highly dynamic character connected with violent formation of plasmoids at many scales. The cascade of plasmoid formation represents natural process of fast, turbulent energy transfer to the kinetic dissipation scale. This concept, revealed by numerical simulations, has found its ground in the theory of (ideal) plasmoid instability in current layers with high aspect ratio. The plasmoid dominated reconnection regime is capable to account for many puzzling dilemmas in the flare physics ranging from the observation-demanded energy release rate vs. standard reconnection-regime timescales, observed organized large-scale structures vs. signatures of fragmented energy release etc. The talk aims at reviewing recent theoretical and simulation development in this direction and observational support for the concept of plasmoid-driven reconnection cascade namely in solar flares.

  4. THE ROLE OF FAST MAGNETIC RECONNECTION ON THE RADIO AND GAMMA-RAY EMISSION FROM THE NUCLEAR REGIONS OF MICROQUASARS AND LOW LUMINOSITY AGNs

    SciTech Connect

    Kadowaki, L. H. S.; Pino, E. M. de Gouveia Dal; Singh, C. B. E-mail: dalpino@iag.usp.br

    2015-04-01

    Fast magnetic reconnection events can be a very powerful mechanism operating in the core region of microquasars and active galactic nuclei (AGNs). In earlier work, it has been suggested that the power released by fast reconnection events between the magnetic field lines lifting from the inner accretion disk region and the lines anchored into the central black hole could accelerate relativistic particles and produce the observed radio emission from microquasars and low luminosity AGNs (LLAGNs). Moreover, it has been proposed that the observed correlation between the radio emission and the mass of these sources, spanning 10{sup 10} orders of magnitude in mass, might be related to this process. In the present work, we revisit this model comparing two different fast magnetic reconnection mechanisms, namely, fast reconnection driven by anomalous resistivity (AR) and by turbulence. We apply the scenario above to a much larger sample of sources (including also blazars, and gamma-ray bursts—GRBs), and find that LLAGNs and microquasars do confirm the trend above. Furthermore, when driven by turbulence, not only their radio but also their gamma-ray emission can be due to magnetic power released by fast reconnection, which may accelerate particles to relativistic velocities in the core region of these sources. Thus the turbulent-driven fast reconnection model is able to reproduce verywell the observed emission. On the other hand, the emission from blazars and GRBs does not follow the same trend as that of the LLAGNs and microquasars, indicating that the radio and gamma-ray emission in these cases is produced beyond the core, along the jet, by another population of relativistic particles, as expected.

  5. The Role of Fast Magnetic Reconnection on the Radio and Gamma-ray Emission from the Nuclear Regions of Microquasars and Low Luminosity AGNs

    NASA Astrophysics Data System (ADS)

    Kadowaki, L. H. S.; de Gouveia Dal Pino, E. M.; Singh, C. B.

    2015-04-01

    Fast magnetic reconnection events can be a very powerful mechanism operating in the core region of microquasars and active galactic nuclei (AGNs). In earlier work, it has been suggested that the power released by fast reconnection events between the magnetic field lines lifting from the inner accretion disk region and the lines anchored into the central black hole could accelerate relativistic particles and produce the observed radio emission from microquasars and low luminosity AGNs (LLAGNs). Moreover, it has been proposed that the observed correlation between the radio emission and the mass of these sources, spanning 1010 orders of magnitude in mass, might be related to this process. In the present work, we revisit this model comparing two different fast magnetic reconnection mechanisms, namely, fast reconnection driven by anomalous resistivity (AR) and by turbulence. We apply the scenario above to a much larger sample of sources (including also blazars, and gamma-ray bursts—GRBs), and find that LLAGNs and microquasars do confirm the trend above. Furthermore, when driven by turbulence, not only their radio but also their gamma-ray emission can be due to magnetic power released by fast reconnection, which may accelerate particles to relativistic velocities in the core region of these sources. Thus the turbulent-driven fast reconnection model is able to reproduce verywell the observed emission. On the other hand, the emission from blazars and GRBs does not follow the same trend as that of the LLAGNs and microquasars, indicating that the radio and gamma-ray emission in these cases is produced beyond the core, along the jet, by another population of relativistic particles, as expected.

  6. Fast, high-resolution 3D dosimetry utilizing a novel optical-CT scanner incorporating tertiary telecentric collimation

    PubMed Central

    Sakhalkar, H. S.; Oldham, M.

    2008-01-01

    This study introduces a charge coupled device (CCD) area detector based optical-computed tomography (optical-CT) scanner for comprehensive verification of radiation dose distributions recorded in nonscattering radiochromic dosimeters. Defining characteristics include: (i) a very fast scanning time of ~5 min to acquire a complete three-dimensional (3D) dataset, (ii) improved image formation through the use of custom telecentric optics, which ensures accurate projection images and minimizes artifacts from scattered and stray-light sources, and (iii) high resolution (potentially 50 μm) isotropic 3D dose readout. The performance of the CCD scanner for 3D dose readout was evaluated by comparison with independent 3D readout from the single laser beam OCTOPUS™-scanner for the same PRESAGE™ dosimeters. The OCTOPUS™ scanner was considered the “gold standard” technique in light of prior studies demonstrating its accuracy. Additional comparisons were made against calculated dose distributions from the ECLIPSE treatment-planning system. Dose readout for the following treatments were investigated: (i) a single rectangular beam irradiation to investigate small field and very steep dose gradient dosimetry away from edge effects, (ii) a 2-field open beam parallel-opposed irradiation to investigate dosimetry along steep dose gradients, and (iii) a 7-field intensity modulated radiation therapy (IMRT) irradiation to investigate dosimetry for complex treatment delivery involving modulation of fluence and for dosimetry along moderate dose gradients. Dose profiles, dose-difference plots, and gamma maps were employed to evaluate quantitative estimates of agreement between independently measured and calculated dose distributions. Results indicated that dose readout from the CCD scanner was in agreement with independent gold-standard readout from the OCTOPUS™-scanner as well as the calculated ECLIPSE dose distribution for all treatments, except in regions within a few

  7. Fast, high-resolution 3D dosimetry utilizing a novel optical-CT scanner incorporating tertiary telecentric collimation

    SciTech Connect

    Sakhalkar, H. S.; Oldham, M.

    2008-01-15

    This study introduces a charge coupled device (CCD) area detector based optical-computed tomography (optical-CT) scanner for comprehensive verification of radiation dose distributions recorded in nonscattering radiochromic dosimeters. Defining characteristics include: (i) a very fast scanning time of {approx}5 min to acquire a complete three-dimensional (3D) dataset, (ii) improved image formation through the use of custom telecentric optics, which ensures accurate projection images and minimizes artifacts from scattered and stray-light sources, and (iii) high resolution (potentially 50 {mu}m) isotropic 3D dose readout. The performance of the CCD scanner for 3D dose readout was evaluated by comparison with independent 3D readout from the single laser beam OCTOPUS-scanner for the same PRESAGE dosimeters. The OCTOPUS scanner was considered the 'gold standard' technique in light of prior studies demonstrating its accuracy. Additional comparisons were made against calculated dose distributions from the ECLIPSE treatment-planning system. Dose readout for the following treatments were investigated: (i) a single rectangular beam irradiation to investigate small field and very steep dose gradient dosimetry away from edge effects, (ii) a 2-field open beam parallel-opposed irradiation to investigate dosimetry along steep dose gradients, and (iii) a 7-field intensity modulated radiation therapy (IMRT) irradiation to investigate dosimetry for complex treatment delivery involving modulation of fluence and for dosimetry along moderate dose gradients. Dose profiles, dose-difference plots, and gamma maps were employed to evaluate quantitative estimates of agreement between independently measured and calculated dose distributions. Results indicated that dose readout from the CCD scanner was in agreement with independent gold-standard readout from the OCTOPUS-scanner as well as the calculated ECLIPSE dose distribution for all treatments, except in regions within a few millimeters of

  8. Fast, high-resolution 3D dosimetry utilizing a novel optical-CT scanner incorporating tertiary telecentric collimation.

    PubMed

    Sakhalkar, H S; Oldham, M

    2008-01-01

    This study introduces a charge coupled device (CCD) area detector based optical-computed tomography (optical-CT) scanner for comprehensive verification of radiation dose distributions recorded in nonscattering radiochromic dosimeters. Defining characteristics include: (i) a very fast scanning time of approximately 5 min to acquire a complete three-dimensional (3D) dataset, (ii) improved image formation through the use of custom telecentric optics, which ensures accurate projection images and minimizes artifacts from scattered and stray-light sources, and (iii) high resolution (potentially 50 microm) isotropic 3D dose readout. The performance of the CCD scanner for 3D dose readout was evaluated by comparison with independent 3D readout from the single laser beam OCTOPUS-scanner for the same PRESAGE dosimeters. The OCTOPUS scanner was considered the "gold standard" technique in light of prior studies demonstrating its accuracy. Additional comparisons were made against calculated dose distributions from the ECLIPSE treatment-planning system. Dose readout for the following treatments were investigated: (i) a single rectangular beam irradiation to investigate small field and very steep dose gradient dosimetry away from edge effects, (ii) a 2-field open beam parallel-opposed irradiation to investigate dosimetry along steep dose gradients, and (iii) a 7-field intensity modulated radiation therapy (IMRT) irradiation to investigate dosimetry for complex treatment delivery involving modulation of fluence and for dosimetry along moderate dose gradients. Dose profiles, dose-difference plots, and gamma maps were employed to evaluate quantitative estimates of agreement between independently measured and calculated dose distributions. Results indicated that dose readout from the CCD scanner was in agreement with independent gold-standard readout from the OCTOPUS-scanner as well as the calculated ECLIPSE dose distribution for all treatments, except in regions within a few

  9. NCC-RANSAC: A Fast Plane Extraction Method for 3-D Range Data Segmentation

    PubMed Central

    Qian, Xiangfei; Ye, Cang

    2015-01-01

    This paper presents a new plane extraction (PE) method based on the random sample consensus (RANSAC) approach. The generic RANSAC-based PE algorithm may over-extract a plane, and it may fail in case of a multistep scene where the RANSAC procedure results in multiple inlier patches that form a slant plane straddling the steps. The CC-RANSAC PE algorithm successfully overcomes the latter limitation if the inlier patches are separate. However, it fails if the inlier patches are connected. A typical scenario is a stairway with a stair wall where the RANSAC plane-fitting procedure results in inliers patches in the tread, riser, and stair wall planes. They connect together and form a plane. The proposed method, called normal-coherence CC-RANSAC (NCC-RANSAC), performs a normal coherence check to all data points of the inlier patches and removes the data points whose normal directions are contradictory to that of the fitted plane. This process results in separate inlier patches, each of which is treated as a candidate plane. A recursive plane clustering process is then executed to grow each of the candidate planes until all planes are extracted in their entireties. The RANSAC plane-fitting and the recursive plane clustering processes are repeated until no more planes are found. A probabilistic model is introduced to predict the success probability of the NCC-RANSAC algorithm and validated with real data of a 3-D time-of-flight camera–SwissRanger SR4000. Experimental results demonstrate that the proposed method extracts more accurate planes with less computational time than the existing RANSAC-based methods. PMID:24771605

  10. Suppression law of quantum states in a 3D photonic fast Fourier transform chip

    NASA Astrophysics Data System (ADS)

    Crespi, Andrea; Osellame, Roberto; Ramponi, Roberta; Bentivegna, Marco; Flamini, Fulvio; Spagnolo, Nicolò; Viggianiello, Niko; Innocenti, Luca; Mataloni, Paolo; Sciarrino, Fabio

    2016-02-01

    The identification of phenomena able to pinpoint quantum interference is attracting large interest. Indeed, a generalization of the Hong-Ou-Mandel effect valid for any number of photons and optical modes would represent an important leap ahead both from a fundamental perspective and for practical applications, such as certification of photonic quantum devices, whose computational speedup is expected to depend critically on multi-particle interference. Quantum distinctive features have been predicted for many particles injected into multimode interferometers implementing the Fourier transform over the optical modes. Here we develop a scalable approach for the implementation of the fast Fourier transform algorithm using three-dimensional photonic integrated interferometers, fabricated via femtosecond laser writing technique. We observe the suppression law for a large number of output states with four- and eight-mode optical circuits: the experimental results demonstrate genuine quantum interference between the injected photons, thus offering a powerful tool for diagnostic of photonic platforms.

  11. Suppression law of quantum states in a 3D photonic fast Fourier transform chip

    PubMed Central

    Crespi, Andrea; Osellame, Roberto; Ramponi, Roberta; Bentivegna, Marco; Flamini, Fulvio; Spagnolo, Nicolò; Viggianiello, Niko; Innocenti, Luca; Mataloni, Paolo; Sciarrino, Fabio

    2016-01-01

    The identification of phenomena able to pinpoint quantum interference is attracting large interest. Indeed, a generalization of the Hong–Ou–Mandel effect valid for any number of photons and optical modes would represent an important leap ahead both from a fundamental perspective and for practical applications, such as certification of photonic quantum devices, whose computational speedup is expected to depend critically on multi-particle interference. Quantum distinctive features have been predicted for many particles injected into multimode interferometers implementing the Fourier transform over the optical modes. Here we develop a scalable approach for the implementation of the fast Fourier transform algorithm using three-dimensional photonic integrated interferometers, fabricated via femtosecond laser writing technique. We observe the suppression law for a large number of output states with four- and eight-mode optical circuits: the experimental results demonstrate genuine quantum interference between the injected photons, thus offering a powerful tool for diagnostic of photonic platforms. PMID:26843135

  12. A fast numerical method for calculating the 3D proton dose profile in a single-ring wobbling spreading system.

    PubMed

    Riazi, Z; Afarideh, H; Sadighi-Bonabi, R

    2011-09-01

    Based on the determination of protons fluence at the phantom's surface, a 3D dose distribution is calculated inside a water phantom using a fast method. The dose contribution of secondary particles, originating from inelastic nuclear interactions, is also taken into account. This is achieved by assuming that 60% of the energy transferred to secondary particles is locally absorbed. Secondary radiation delivers approximately 16.8% of the total dose in the plateau region of the Bragg curve for monoenergetic protons of energy 190 MeV. The physical dose beyond the Bragg peak is obtained for a proton beam of 190 MeV using a Geant4 simulation. It is found that the dose beyond the Bragg peak is <0.02% of the maximum dose and is mainly delivered by protons produced via reactions of the secondary neutrons. The relative dose profile is also calculated by simulation of the proposed beam line in Geant4 code. The dose profile produced by our method agrees, within 2%, with the results predicted by the Fermi Eyges distribution function and the results of the Geant4 simulation. It is expected that the fast numerical approach proposed herein may be utilised in 3D deterministic treatment planning programs, to model proton propagation in order to analyse the effect of modifying the beam line.

  13. Fast Numerical Algorithms for 3-D Scattering from PEC and Dielectric Random Rough Surfaces in Microwave Remote Sensing

    NASA Astrophysics Data System (ADS)

    Zhang, Lisha

    We present fast and robust numerical algorithms for 3-D scattering from perfectly electrical conducting (PEC) and dielectric random rough surfaces in microwave remote sensing. The Coifman wavelets or Coiflets are employed to implement Galerkin's procedure in the method of moments (MoM). Due to the high-precision one-point quadrature, the Coiflets yield fast evaluations of the most off-diagonal entries, reducing the matrix fill effort from O(N2) to O( N). The orthogonality and Riesz basis of the Coiflets generate well conditioned impedance matrix, with rapid convergence for the conjugate gradient solver. The resulting impedance matrix is further sparsified by the matrix-formed standard fast wavelet transform (SFWT). By properly selecting multiresolution levels of the total transformation matrix, the solution precision can be enhanced while matrix sparsity and memory consumption have not been noticeably sacrificed. The unified fast scattering algorithm for dielectric random rough surfaces can asymptotically reduce to the PEC case when the loss tangent grows extremely large. Numerical results demonstrate that the reduced PEC model does not suffer from ill-posed problems. Compared with previous publications and laboratory measurements, good agreement is observed.

  14. Fast particles identification in programmable form at level-0 trigger by means of the 3D-Flow system

    SciTech Connect

    Crosetto, Dario B.

    1998-10-30

    The 3D-Flow Processor system is a new, technology-independent concept in very fast, real-time system architectures. Based on either an FPGA or an ASIC implementation, it can address, in a fully programmable manner, applications where commercially available processors would fail because of throughput requirements. Possible applications include filtering-algorithms (pattern recognition) from the input of multiple sensors, as well as moving any input validated by these filtering-algorithms to a single output channel. Both operations can easily be implemented on a 3D-Flow system to achieve a real-time processing system with a very short lag time. This system can be built either with off-the-shelf FPGAs or, for higher data rates, with CMOS chips containing 4 to 16 processors each. The basic building block of the system, a 3D-Flow processor, has been successfully designed in VHDL code written in ''Generic HDL'' (mostly made of reusable blocks that are synthesizable in different technologies, or FPGAs), to produce a netlist for a four-processor ASIC featuring 0.35 micron CBA (Ceil Base Array) technology at 3.3 Volts, 884 mW power dissipation at 60 MHz and 63.75 mm sq. die size. The same VHDL code has been targeted to three FPGA manufacturers (Altera EPF10K250A, ORCA-Lucent Technologies 0R3T165 and Xilinx XCV1000). A complete set of software tools, the 3D-Flow System Manager, equally applicable to ASIC or FPGA implementations, has been produced to provide full system simulation, application development, real-time monitoring, and run-time fault recovery. Today's technology can accommodate 16 processors per chip in a medium size die, at a cost per processor of less than $5 based on the current silicon die/size technology cost.

  15. Comparison of fast 3D simulation and actinic inspection for EUV masks with buries defects

    SciTech Connect

    Clifford, C. H.; Wiraatmadja, S.; Chan, T. T.; Neureuther, A. R.; Goldberg, K. A.; Mochi, I.; Liang, T.

    2009-02-23

    Aerial images for isolated defects and the interactions of defects with features are compared between the Actinic Inspection Tool (AIT) at Lawrence Berkeley National Laboratory (LBNL) and the fast EUV simulation program RADICAL. Comparisons between AIT images from August 2007 and RADICAL simulations are used to extract aberrations. At this time astigmatism was the dominant aberration with a value of 0.55 waves RMS. Significant improvements in the imaging performance of the AIT were made between August 2007 and December 2008. A good match will be shown between the most recent AIT images and RADICAL simulations without aberrations. These comparisons will demonstrate that a large defect, in this case 7nm tall on the surface, is still printable even if it is centered under the absorber line. These comparisons also suggest that the minimum defect size is between 1.5nm and 0.8nm surface height because a 1.5nm defect was printable but a 0.8nm was not. Finally, the image of a buried defect near an absorber line through focus will demonstrate an inversion in the effect of the defect from a protrusion of the dark line into the space to a protrusion of the space into the line.

  16. A fast 3D image simulation algorithm of moving target for scanning laser radar

    NASA Astrophysics Data System (ADS)

    Li, Jicheng; Shi, Zhiguang; Chen, Xiao; Chen, Dong

    2014-10-01

    Scanning Laser Radar has been widely used in many military and civil areas. Usually there are relative movements between the target and the radar, so the moving target image modeling and simulation is an important research content in the field of signal processing and system design of scan-imaging laser radar. In order to improve the simulation speed and hold the accuracy of the image simulation simultaneously, a novel fast simulation algorithm is proposed in this paper. Firstly, for moving target or varying scene, an inequation that can judge the intersection relations between the pixel and target bins is obtained by deriving the projection of target motion trajectories on the image plane. Then, by utilizing the time subdivision and approximate treatments, the potential intersection relations of pixel and target bins are determined. Finally, the goal of reducing the number of intersection operations could be achieved by testing all the potential relations and finding which of them is real intersection. To test the method's performance, we perform computer simulations of both the new proposed algorithm and a literature's algorithm for six targets. The simulation results show that the two algorithm yield the same imaging result, whereas the number of intersection operations of former is equivalent to only 1% of the latter, and the calculation efficiency increases a hundredfold. The novel simulation acceleration idea can be applied extensively in other more complex application environments and provide equally acceleration effect. It is very suitable for the case to produce a great large number of laser radar images.

  17. Fast 3D molecular superposition and similarity search in databases of flexible molecules

    NASA Astrophysics Data System (ADS)

    Krämer, Andreas; Horn, Hans W.; Rice, Julia E.

    2003-01-01

    We present a new method (fFLASH) for the virtual screening of compound databases that is based on explicit three-dimensional molecular superpositions. fFLASH takes the torsional flexibility of the database molecules fully into account, and can deal with an arbitrary number of conformation-dependent molecular features. The method utilizes a fragmentation-reassembly approach which allows for an efficient sampling of the conformational space. A fast clique-based pattern matching algorithm generates alignments of pairs of adjacent molecular fragments on the rigid query molecule that are subsequently reassembled to complete database molecules. Using conventional molecular features (hydrogen bond donors and acceptors, charges, and hydrophobic groups) we show that fFLASH is able to rapidly produce accurate alignments of medium-sized drug-like molecules. Experiments with a test database containing a diverse set of 1780 drug-like molecules (including all conformers) have shown that average query processing times of the order of 0.1 seconds per molecule can be achieved on a PC.

  18. Application of ATHLET/DYN3D coupled codes system for fast liquid metal cooled reactor steady state simulation

    NASA Astrophysics Data System (ADS)

    Ivanov, V.; Samokhin, A.; Danicheva, I.; Khrennikov, N.; Bouscuet, J.; Velkov, K.; Pasichnyk, I.

    2017-01-01

    In this paper the approaches used for developing of the BN-800 reactor test model and for validation of coupled neutron-physic and thermohydraulic calculations are described. Coupled codes ATHLET 3.0 (code for thermohydraulic calculations of reactor transients) and DYN3D (3-dimensional code of neutron kinetics) are used for calculations. The main calculation results of reactor steady state condition are provided. 3-D model used for neutron calculations was developed for start reactor BN-800 load. The homogeneous approach is used for description of reactor assemblies. Along with main simplifications, the main reactor BN-800 core zones are described (LEZ, MEZ, HEZ, MOX, blankets). The 3D neutron physics calculations were provided with 28-group library, which is based on estimated nuclear data ENDF/B-7.0. Neutron SCALE code was used for preparation of group constants. Nodalization hydraulic model has boundary conditions by coolant mass-flow rate for core inlet part, by pressure and enthalpy for core outlet part, which can be chosen depending on reactor state. Core inlet and outlet temperatures were chosen according to reactor nominal state. The coolant mass flow rate profiling through the core is based on reactor power distribution. The test thermohydraulic calculations made with using of developed model showed acceptable results in coolant mass flow rate distribution through the reactor core and in axial temperature and pressure distribution. The developed model will be upgraded in future for different transient analysis in metal-cooled fast reactors of BN type including reactivity transients (control rods withdrawal, stop of the main circulation pump, etc.).

  19. Fast, Accurate and Precise Mid-Sagittal Plane Location in 3D MR Images of the Brain

    NASA Astrophysics Data System (ADS)

    Bergo, Felipe P. G.; Falcão, Alexandre X.; Yasuda, Clarissa L.; Ruppert, Guilherme C. S.

    Extraction of the mid-sagittal plane (MSP) is a key step for brain image registration and asymmetry analysis. We present a fast MSP extraction method for 3D MR images, based on automatic segmentation of the brain and on heuristic maximization of the cerebro-spinal fluid within the MSP. The method is robust to severe anatomical asymmetries between the hemispheres, caused by surgical procedures and lesions. The method is also accurate with respect to MSP delineations done by a specialist. The method was evaluated on 64 MR images (36 pathological, 20 healthy, 8 synthetic), and it found a precise and accurate approximation of the MSP in all of them with a mean time of 60.0 seconds per image, mean angular variation within a same image (precision) of 1.26o and mean angular difference from specialist delineations (accuracy) of 1.64o.

  20. Cross-Platform Graphical User Interface with fast 3-D Rendering for Particle-in-Cell Simulations

    NASA Astrophysics Data System (ADS)

    Bruhwiler, David; Luetkemeyer, Kelly; Cary, John

    1999-11-01

    The Graphical User Interface (GUI) for XOOPIC (X11-based Object-Oriented Particle-in-Cell) is being ported to Qt, a cross-platform C++ windowing toolkit, thus permitting the code to run on PC's running both Windows 95/98/NT and Linux, as well as all commercial Unix platforms. All 3-D graphics will be handled through OpenGL, the cross-platform standard for fast 3-D rendering. The use of object-oriented design (OOD) techniques keeps the GUI/physics interface clean, and minimizes the impact of GUI development on the physics code. OOD also improves the maintainability and extensibility of large scientific simulation codes, while allowing for cross-platform portability and ready interchange of individual algorithms or entire physics kernels. Planned new GUI features include interactive modifications of the simulation parameters, including generation of a slowly-varying mesh and automatic updating of a corresponding input file. Improved modeling of high-power microwave tubes is one of the primary applications being targeted by this project.

  1. Travel time calculation in regular 3D grid in local and regional scale using fast marching method

    NASA Astrophysics Data System (ADS)

    Polkowski, M.

    2015-12-01

    Local and regional 3D seismic velocity models of crust and sediments are very important for numerous technics like mantle and core tomography, localization of local and regional events and others. Most of those techniques require calculation of wave travel time through the 3D model. This can be achieved using multiple approaches from simple ray tracing to advanced full waveform calculation. In this study simple and efficient implementation of fast marching method is presented. This method provides more information than ray tracing and is much less complicated than methods like full waveform being the perfect compromise. Presented code is written in C++, well commented and is easy to modify for different types of studies. Additionally performance is widely discussed including possibilities of multithreading and massive parallelism like GPU. Source code will be published in 2016 as it is part of the PhD thesis. National Science Centre Poland provided financial support for this work via NCN grant DEC-2011/02/A/ST10/00284.

  2. Fast and memory-efficient LOGISMOS graph search for intraretinal layer segmentation of 3D macular OCT scans

    NASA Astrophysics Data System (ADS)

    Lee, Kyungmoo; Zhang, Li; Abramoff, Michael D.; Sonka, Milan

    2015-03-01

    Image segmentation is important for quantitative analysis of medical image data. Recently, our research group has introduced a 3-D graph search method which can simultaneously segment optimal interacting surfaces with respect to the cost function in volumetric images. Although it provides excellent segmentation accuracy, it is computationally demanding (both CPU and memory) to simultaneously segment multiple surfaces from large volumetric images. Therefore, we propose a new, fast, and memory-efficient graph search method for intraretinal layer segmentation of 3-D macular optical coherence tomograpy (OCT) scans. The key idea is to reduce the size of a graph by combining the nodes with high costs based on the multiscale approach. The new approach requires significantly less memory and achieves significantly faster processing speeds (p < 0.01) with only small segmentation differences compared to the original graph search method. This paper discusses sub-optimality of this approach and assesses trade-off relationships between decreasing processing speed and increasing segmentation differences from that of the original method as a function of employed scale of the underlying graph construction.

  3. A cubic interpolation pipeline for fast computation of 3D deformation fields modeled using B-splines

    NASA Astrophysics Data System (ADS)

    Castro-Pareja, Carlos R.; Shekhar, Raj

    2006-02-01

    Fast computation of 3D deformation fields is critical to bringing the application of automated elastic image registration algorithms to routine clinical practice. However, it lies beyond the computational power of current microprocessors; therefore requiring implementations using either massively parallel computers or application-specific hardware accelerators. The use of massively parallel computers in a clinical setting is not practical or cost-effective, therefore making the use of hardware accelerators necessary. We present a hardware pipeline that allows accelerating the computation of 3D deformation fields to speeds up to two orders of magnitude faster than software implementations on current workstations and about 64 times faster than other previously reported architectures. The pipeline implements a version of the free-form deformation calculation algorithm, which is optimized to minimize the number of arithmetic operations required to calculate the transformation of a given set of neighboring voxels, thereby achieving an efficient and compact implementation in hardware which allows its use as part of a larger system.

  4. HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.

    PubMed

    Cornilescu, Gabriel; Bahrami, Arash; Tonelli, Marco; Markley, John L; Eghbalnia, Hamid R

    2007-08-01

    We describe a novel method for the robust, rapid, and reliable determination of J couplings in multi-dimensional NMR coupling data, including small couplings from larger proteins. The method, "High-resolution Iterative Frequency Identification of Couplings" (HIFI-C) is an extension of the adaptive and intelligent data collection approach introduced earlier in HIFI-NMR. HIFI-C collects one or more optimally tilted two-dimensional (2D) planes of a 3D experiment, identifies peaks, and determines couplings with high resolution and precision. The HIFI-C approach, demonstrated here for the 3D quantitative J method, offers vital features that advance the goal of rapid and robust collection of NMR coupling data. (1) Tilted plane residual dipolar couplings (RDC) data are collected adaptively in order to offer an intelligent trade off between data collection time and accuracy. (2) Data from independent planes can provide a statistical measure of reliability for each measured coupling. (3) Fast data collection enables measurements in cases where sample stability is a limiting factor (for example in the presence of an orienting medium required for residual dipolar coupling measurements). (4) For samples that are stable, or in experiments involving relatively stronger couplings, robust data collection enables more reliable determinations of couplings in shorter time, particularly for larger biomolecules. As a proof of principle, we have applied the HIFI-C approach to the 3D quantitative J experiment to determine N-C' RDC values for three proteins ranging from 56 to 159 residues (including a homodimer with 111 residues in each subunit). A number of factors influence the robustness and speed of data collection. These factors include the size of the protein, the experimental set up, and the coupling being measured, among others. To exhibit a lower bound on robustness and the potential for time saving, the measurement of dipolar couplings for the N-C' vector represents a realistic

  5. Accuracy of the fast multipole boundary element method with quadratic elements in the analysis of 3D porous structures

    NASA Astrophysics Data System (ADS)

    Ptaszny, Jacek

    2015-09-01

    In this work, a fast multipole boundary element method for 3D elasticity problem was developed by the application of the fast multipole algorithm and isoparametric 8-node boundary elements with quadratic shape functions. The problem is described by the boundary integral equation involving the Kelvin solutions. In order to keep the numerical integration error on appropriate level, an adaptive method with subdivision of boundary elements into subelements, described in the literature, was applied. An extension of the neighbour list of boundary element clusters, corresponding to near-field computations, was proposed in order to reduce the truncation error of expansions in problems with high stress concentration. Efficiency of the method is illustrated by numerical examples including a solid with single spherical cavity, solids with two interacting spherical cavities, and numerical homogenization of solids with cubic arrangement of spherical cavities. All results agree with analytical models available in the literature. The examples show that the method can be applied to the analysis of porous structures.

  6. Method for Fast CT/SPECT-Based 3D Monte Carlo Absorbed Dose Computations in Internal Emitter Therapy

    PubMed Central

    Wilderman, S. J.; Dewaraja, Y. K.

    2010-01-01

    The DPM (Dose Planning Method) Monte Carlo electron and photon transport program, designed for fast computation of radiation absorbed dose in external beam radiotherapy, has been adapted to the calculation of absorbed dose in patient-specific internal emitter therapy. Because both its photon and electron transport mechanics algorithms have been optimized for fast computation in 3D voxelized geometries (in particular, those derived from CT scans), DPM is perfectly suited for performing patient-specific absorbed dose calculations in internal emitter therapy. In the updated version of DPM developed for the current work, the necessary inputs are a patient CT image, a registered SPECT image, and any number of registered masks defining regions of interest. DPM has been benchmarked for internal emitter therapy applications by comparing computed absorption fractions for a variety of organs using a Zubal phantom with reference results from the Medical Internal Radionuclide Dose (MIRD) Committee standards. In addition, the β decay source algorithm and the photon tracking algorithm of DPM have been further benchmarked by comparison to experimental data. This paper presents a description of the program, the results of the benchmark studies, and some sample computations using patient data from radioimmunotherapy studies using 131I. PMID:20305792

  7. 3D shape and eccentricity measurements of fast rotating rough objects by two mutually tilted interference fringe systems

    NASA Astrophysics Data System (ADS)

    Czarske, J. W.; Kuschmierz, R.; Günther, P.

    2013-06-01

    Precise measurements of distance, eccentricity and 3D-shape of fast moving objects such as turning parts of lathes, gear shafts, magnetic bearings, camshafts, crankshafts and rotors of vacuum pumps are on the one hand important tasks. On the other hand they are big challenges, since contactless precise measurement techniques are required. Optical techniques are well suitable for distance measurements of non-moving surfaces. However, measurements of laterally fast moving surfaces are still challenging. For such tasks the laser Doppler distance sensor technique was invented by the TU Dresden some years ago. This technique has been realized by two mutually tilted interference fringe systems, where the distance is coded in the phase difference between the generated interference signals. However, due to the speckle effect different random envelopes and phase jumps of the interference signals occur. They disturb the phase difference estimation between the interference signals. In this paper, we will report on a scientific breakthrough on the measurement uncertainty budget which has been achieved recently. Via matching of the illumination and receiving optics the measurement uncertainty of the displacement and distance can be reduced by about one magnitude. For displacement measurements of a recurring rough surface a standard deviation of 110 nm were attained at lateral velocities of 5 m / s. Due to the additionally measured lateral velocity and the rotational speed, the two-dimensional shape of rotating objects is calculated. The three-dimensional shape can be conducted by employment of a line camera. Since the measurement uncertainty of the displacement, vibration, distance, eccentricity, and shape is nearly independent of the lateral surface velocity, this technique is predestined for fast-rotating objects. Especially it can be advantageously used for the quality control of workpieces inside of a lathe towards the reduction of process tolerances, installation times and

  8. Fast 3D in vivo swept-source optical coherence tomography using a two-axis MEMS scanning micromirror

    NASA Astrophysics Data System (ADS)

    Kumar, Karthik; Condit, Jonathan C.; McElroy, Austin; Kemp, Nate J.; Hoshino, Kazunori; Milner, Thomas E.; Zhang, Xiaojing

    2008-04-01

    We report on a fibre-based forward-imaging swept-source optical coherence tomography system using a high-reflectivity two-axis microelectromechanical scanning mirror for high-speed 3D in vivo visualization of cellular-scale architecture of biological specimens. The scanning micromirrors, based on electrostatic staggered vertical comb drive actuators, can provide ± 9° of optical deflection on both rotation axes and uniform reflectivity of greater than 90% over the range of imaging wavelengths (1260-1360 nm), allowing for imaging turbid samples with good signal-to-noise ratio. The wavelength-swept laser, scanning over 100 nm spectrum at 20 kHz rate, enables fast image acquisition at 10.2 million voxels s-1 (for 3D imaging) or 40 frames s-1 (for 2D imaging with 500 transverse pixels per image) with 8.6 µm axial resolution. Lateral resolution of 12.5 µm over 3 mm field of view in each lateral direction is obtained using ZEMAX optical simulations for the lateral beam scanning system across the scanning angle range of the 500 µm × 700 µm micromirror. We successfully acquired en face and tomographic images of rigid structures (scanning micromirror), in vitro biological samples (onion peels and pickle slices) and in vivo images of human epidermis over 2 × 1 × 4 mm3 imaging volume in real time at faster-than-video 2D frame rates. The results indicate that our system framework may be suitable for image-guided minimally invasive examination of various diseased tissues.

  9. Fast and accurate 3-D ray tracing using bilinear traveltime interpolation and the wave front group marching

    NASA Astrophysics Data System (ADS)

    Zhang, Jianzhong; Huang, Yueqin; Song, Lin-Ping; Liu, Qing-Huo

    2011-03-01

    We propose a new ray tracing technique in a 3-D heterogeneous isotropic media based on bilinear traveltime interpolation and the wave front group marching. In this technique, the media is discretized into a series of rectangular cells. There are two steps to be carried out: one is a forward step where wave front expansion is evolved from sources to whole computational domain and the subsequent one is a backward step where ray paths are calculated for any source-receiver configuration as desired. In the forward step, we derive a closed-form expression to calculate traveltime at an arbitrary point in a cell using a bilinear interpolation of the known traveltimes on the cell's surface. Then the group marching method (GMM), a fast wave front advancing method, is applied to expand the wave front from the source to all girds. In the backward step, ray paths starting from receivers are traced by finding the intersection points of potential ray propagation vectors with the surfaces of relevant cells. In this step, the same TI scheme is used to compute the candidate intersection points on all surfaces of each relevant cell. In this process, the point with the minimum traveltime is selected as a ray point from which the similar step is continued until sources. A number of numerical experiments demonstrate that our 3-D ray tracing technique is able to achieve very accurate computation of traveltimes and ray paths and meanwhile take much less computer time in comparison with the existing popular ones like the finite-difference-based GMM method, which is combined with the maximum gradient ray tracing, and the shortest path method.

  10. Fast and Forceful: Modulation of Response Activation Induced by Shifts of Perceived Depth in Virtual 3D Space

    PubMed Central

    Plewan, Thorsten; Rinkenauer, Gerhard

    2016-01-01

    Reaction time (RT) can strongly be influenced by a number of stimulus properties. For instance, there was converging evidence that perceived size rather than physical (i.e., retinal) size constitutes a major determinant of RT. However, this view has recently been challenged since within a virtual three-dimensional (3D) environment retinal size modulation failed to influence RT. In order to further investigate this issue in the present experiments response force (RF) was recorded as a supplemental measure of response activation in simple reaction tasks. In two separate experiments participants’ task was to react as fast as possible to the occurrence of a target located close to the observer or farther away while the offset between target locations was increased from Experiment 1 to Experiment 2. At the same time perceived target size (by varying the retinal size across depth planes) and target type (sphere vs. soccer ball) were modulated. Both experiments revealed faster and more forceful reactions when targets were presented closer to the observers. Perceived size and target type barely affected RT and RF in Experiment 1 but differentially affected both variables in Experiment 2. Thus, the present findings emphasize the usefulness of RF as a supplement to conventional RT measurement. On a behavioral level the results confirm that (at least) within virtual 3D space perceived object size neither strongly influences RT nor RF. Rather the relative position within egocentric (body-centered) space presumably indicates an object’s behavioral relevance and consequently constitutes an important modulator of visual processing. PMID:28018273

  11. Liver Tumor Segmentation from MR Images Using 3D Fast Marching Algorithm and Single Hidden Layer Feedforward Neural Network.

    PubMed

    Le, Trong-Ngoc; Bao, Pham The; Huynh, Hieu Trung

    2016-01-01

    Objective. Our objective is to develop a computerized scheme for liver tumor segmentation in MR images. Materials and Methods. Our proposed scheme consists of four main stages. Firstly, the region of interest (ROI) image which contains the liver tumor region in the T1-weighted MR image series was extracted by using seed points. The noise in this ROI image was reduced and the boundaries were enhanced. A 3D fast marching algorithm was applied to generate the initial labeled regions which are considered as teacher regions. A single hidden layer feedforward neural network (SLFN), which was trained by a noniterative algorithm, was employed to classify the unlabeled voxels. Finally, the postprocessing stage was applied to extract and refine the liver tumor boundaries. The liver tumors determined by our scheme were compared with those manually traced by a radiologist, used as the "ground truth." Results. The study was evaluated on two datasets of 25 tumors from 16 patients. The proposed scheme obtained the mean volumetric overlap error of 27.43% and the mean percentage volume error of 15.73%. The mean of the average surface distance, the root mean square surface distance, and the maximal surface distance were 0.58 mm, 1.20 mm, and 6.29 mm, respectively.

  12. Optimized design of a LED-array-based TOF range imaging sensor for fast 3-D shape measurement

    NASA Astrophysics Data System (ADS)

    Wang, Huanqin; Wang, Ying; Xu, Jun; He, Deyong; Zhao, Tianpeng; Ming, Hai; Kong, Deyi

    2011-06-01

    A LED-array-based range imaging sensor using Time-of-Flight (TOF) distance measurement was developed to capture the depth information of three-dimensional (3-D) object. By time-division electronic scanning of the LED heterodyne phase-shift TOF range finders in array, the range images were fast obtained without any mechanical moving parts. The design of LED-array-based range imaging sensor was adequately described and a range imaging theoretical model based on photoelectric signal processing was built, which showed there was mutual restriction relationship among the measurement time of a depth pixel, the bandwidth of receiver and the sensor's signal-to-noise ratio (SNR). In order to improve the key parameters of sensor such as range resolution and measurement speed simultaneously, some optimized designs needed to be done for the proposed range imaging sensor, including choosing proper parameters for the filters in receiver, adopting special structure feedback automatic gain control (AGC) circuit with short response time, etc. The final experiment results showed the sensor after optimization could acquire the range images at a rate of 10 frames per second with a range resolution as high as +/-2mm in the range of 50-1200mm. The essential advantages of the proposed range imaging sensor were construction with simple structure, high range resolution, short measurement time and low cost, which was sufficient for many robotic and industrial automation applications.

  13. Liver Tumor Segmentation from MR Images Using 3D Fast Marching Algorithm and Single Hidden Layer Feedforward Neural Network

    PubMed Central

    2016-01-01

    Objective. Our objective is to develop a computerized scheme for liver tumor segmentation in MR images. Materials and Methods. Our proposed scheme consists of four main stages. Firstly, the region of interest (ROI) image which contains the liver tumor region in the T1-weighted MR image series was extracted by using seed points. The noise in this ROI image was reduced and the boundaries were enhanced. A 3D fast marching algorithm was applied to generate the initial labeled regions which are considered as teacher regions. A single hidden layer feedforward neural network (SLFN), which was trained by a noniterative algorithm, was employed to classify the unlabeled voxels. Finally, the postprocessing stage was applied to extract and refine the liver tumor boundaries. The liver tumors determined by our scheme were compared with those manually traced by a radiologist, used as the “ground truth.” Results. The study was evaluated on two datasets of 25 tumors from 16 patients. The proposed scheme obtained the mean volumetric overlap error of 27.43% and the mean percentage volume error of 15.73%. The mean of the average surface distance, the root mean square surface distance, and the maximal surface distance were 0.58 mm, 1.20 mm, and 6.29 mm, respectively. PMID:27597960

  14. Hypocenter relocation using a fast grid search method and a 3-D seismic velocity model for the Sumatra region

    SciTech Connect

    Nugroho, Hendro; Widiyantoro, Sri; Nugraha, Andri Dian

    2013-09-09

    Determination of earthquake hypocenter in Indonesia conducted by the Meteorological, Climatological, and Geophysical Agency (MCGA) has still used a 1-D seismic velocity model. In this research, we have applied a Fast Grid Search (FGM) method and a 3-D velocity model resulting from tomographic imaging to relocate earthquakes in the Sumatran region. The data were taken from the MCGA data catalog from 2009 to 2011 comprising of subduction zone and on land fault earthquakes with magnitude greater than 4 Mw. Our preliminary results show some significant changes in the depths of the relocated earthquakes which are in general deeper than the depths of hypocenters from the MCGA data catalog. The residual times resulting from the relocation process are smaller than those prior to the relocation. Encouraged by these results, we will continue to conduct hypocenter relocation for all events from the MCGA data catalog periodically in order to produce a new data catalog with good quality. We hope that the new data catalog will be useful for further studies.

  15. Gravity data inversion to determine 3D topographycal density contrast of Banten area, Indonesia based on fast Fourier transform

    NASA Astrophysics Data System (ADS)

    Windhari, Ayuty; Handayani, Gunawan

    2015-04-01

    The 3D inversion gravity anomaly to estimate topographical density using a matlab source code from gridded data provided by Parker Oldenburg algorithm based on fast Fourier transform was computed. We extend and improved the source code of 3DINVERT.M invented by Gomez Ortiz and Agarwal (2005) using the relationship between Fourier transform of the gravity anomaly and the sum of the Fourier transform from the topography density. We gave density contrast between the two media to apply the inversion. FFT routine was implemented to construct amplitude spectrum to the given mean depth. The results were presented as new graphics of inverted topography density, the gravity anomaly due to the inverted topography and the difference between the input gravity data and the computed ones. It terminates when the RMS error is lower than pre-assigned value used as convergence criterion or until maximum of iterations is reached. As an example, we used the matlab program on gravity data of Banten region, Indonesia.

  16. Medical applications of fast 3D cameras in real-time image-guided radiotherapy (IGRT) of cancer

    NASA Astrophysics Data System (ADS)

    Li, Shidong; Li, Tuotuo; Geng, Jason

    2013-03-01

    Dynamic volumetric medical imaging (4DMI) has reduced motion artifacts, increased early diagnosis of small mobile tumors, and improved target definition for treatment planning. High speed cameras for video, X-ray, or other forms of sequential imaging allow a live tracking of external or internal movement useful for real-time image-guided radiation therapy (IGRT). However, none of 4DMI can track real-time organ motion and no camera has correlated with 4DMI to show volumetric changes. With a brief review of various IGRT techniques, we propose a fast 3D camera for live-video stereovision, an automatic surface-motion identifier to classify body or respiratory motion, a mechanical model for synchronizing the external surface movement with the internal target displacement by combination use of the real-time stereovision and pre-treatment 4DMI, and dynamic multi-leaf collimation for adaptive aiming the moving target. Our preliminary results demonstrate that the technique is feasible and efficient in IGRT of mobile targets. A clinical trial has been initiated for validation of its spatial and temporal accuracies and dosimetric impact for intensity-modulated RT (IMRT), volumetric-modulated arc therapy (VMAT), and stereotactic body radiotherapy (SBRT) of any mobile tumors. The technique can be extended for surface-guided stereotactic needle insertion in biopsy of small lung nodules.

  17. MO-G-BRF-07: Anomalously Fast Diffusion of Carbon Nanotubes Carriers in 3D Tissue Model

    SciTech Connect

    Wang, Y; Bahng, J; Kotov, N

    2014-06-15

    Purpose: We aim to investigate and understand diffusion process of carbon nanotubes (CNTs) and other nanoscale particles in tissue and organs. Methods: In this research, we utilized a 3D model tissue of hepatocellular carcinoma (HCC)cultured in inverted colloidal crystal (ICC) scaffolds to compare the diffusivity of CNTs with small molecules such as Rhodamine and FITC in vitro, and further investigated the transportation of CNTs with and without targeting ligand, TGFβ1. The real-time permeation profiles of CNTs in HCC tissue model with high temporal and spatial resolution was demonstrated by using standard confocal microscopy. Quantitative analysis of the diffusion process in 3D was carried out using luminescence intensity in a series of Z-stack images obtained for different time points of the diffusion process after initial addition of CNTs or small molecules to the cell culture and the image data was analyzed by software ImageJ and Mathematica. Results: CNTs display diffusion rate in model tissues substantially faster than small molecules of the similar charge such as FITC, and the diffusion rate of CNTs are significantly enhanced with targeting ligand, TGFβ1. Conclusion: In terms of the advantages of in-vitro model, we were able to have access to measuring the rate of CNT penetration at designed conditions with variable parameters. And the findings by using this model, changed our understanding about advantages of CNTs as nanoscale drug carriers and provides design principles for making new drug carriers for both treatment and diagnostics. Additionally the fast diffusion opens the discussion of the best possible drug carriers to reach deep parts of cancerous tissues, which is often a prerequisite for successful cancer treatment. This work was supported by the Center for Photonic and Multiscale Nanomaterials funded by National Science Foundation Materials Research Science and Engineering Center program DMR 1120923. The work was also partially supported by NSF

  18. Perspectives on magnetic reconnection

    PubMed Central

    Yamada, Masaaki

    2016-01-01

    Magnetic reconnection is a topological rearrangement of magnetic field that occurs on time scales much faster than the global magnetic diffusion time. Since the field lines break on microscopic scales but energy is stored and the field is driven on macroscopic scales, reconnection is an inherently multi-scale process that often involves both magnetohydrodynamic (MHD) and kinetic phenomena. In this article, we begin with the MHD point of view and then describe the dynamics and energetics of reconnection using a two-fluid formulation. We also focus on the respective roles of global and local processes and how they are coupled. We conclude that the triggers for reconnection are mostly global, that the key energy conversion and dissipation processes are either local or global, and that the presence of a continuum of scales coupled from microscopic to macroscopic may be the most likely path to fast reconnection. PMID:28119547

  19. Perspectives on magnetic reconnection

    SciTech Connect

    Zweibel, Ellen G.; Yamada, Masaaki

    2016-12-07

    Magnetic reconnection is a topological rearrangement of magnetic field that occurs on time scales much faster than the global magnetic diffusion time. Since the field lines break on microscopic scales but energy is stored and the field is driven on macroscopic scales, reconnection is an inherently multi-scale process that often involves both magnetohydrodynamic (MHD) and kinetic phenomena. In this article, we begin with the MHD point of view and then describe the dynamics and energetics of reconnection using a two-fluid formulation. We also focus on the respective roles of global and local processes and how they are coupled. Here, we conclude that the triggers for reconnection are mostly global, that the key energy conversion and dissipation processes are either local or global, and that the presence of a continuum of scales coupled from microscopic to macroscopic may be the most likely path to fast reconnection.

  20. Perspectives on magnetic reconnection

    DOE PAGES

    Zweibel, Ellen G.; Yamada, Masaaki

    2016-12-07

    Magnetic reconnection is a topological rearrangement of magnetic field that occurs on time scales much faster than the global magnetic diffusion time. Since the field lines break on microscopic scales but energy is stored and the field is driven on macroscopic scales, reconnection is an inherently multi-scale process that often involves both magnetohydrodynamic (MHD) and kinetic phenomena. In this article, we begin with the MHD point of view and then describe the dynamics and energetics of reconnection using a two-fluid formulation. We also focus on the respective roles of global and local processes and how they are coupled. Here, wemore » conclude that the triggers for reconnection are mostly global, that the key energy conversion and dissipation processes are either local or global, and that the presence of a continuum of scales coupled from microscopic to macroscopic may be the most likely path to fast reconnection.« less

  1. The Reconnection Region With Fast Shock Fronts As A Source Of Microwave Spikes (Based On Soho And Yohkoh Data)

    NASA Astrophysics Data System (ADS)

    Chernov, G. P.; Fu, Q. J.; Lao, D. B.; Kosugi, T.; Hanaoka, Y.

    1999-10-01

    A new model for solar spike bursts is considered based on the interaction of Langmuir waves with ion-sound waves :l+s-->t. Such mechanism can operate in shock fronts, propagating from a magnetic reconnection region. New observations of microwave millisecond spikes are discussed. They have been observed in the event 1997.11.04 between 0552-0610 UT and 1997.11.28 event between 05:00-05:10 UT using multichannel spectrograph in the range 2,6-3.8 GHz of Beijing AO. The first time we describe very fast and narrowband microwave spikes: duration 8 ms, bandwidth 10 MHz. Yohkoh/SXTimages in AR and SOHO EIT images testify a reconstruction of bright loops after the escape of CME in Nov.4 event and X-ray jets in Nov.28 event. Fast shock fronts might be manifested as a narrow very bright line at Te SXT maps ( 18 MK) and as dense structures at Emission Mesure maps. Strong left polarization of spike emission from a source above the leader spot of south magnetic polarity in AR 8100 corresponds in this event to the extraordinary magnetoionic mode. The model gives the ordinary mode of spike emission, therefore we propose the depolarization of the emission in the transverse magnetic field and rather in the vanishing magnetic field in the middle of QT region. The scattering of O-mode into X-mode by whistlers just above the escape level of X-mode can also provide an additional depolarization. Duration and frequency band of isolated spikes are connected with parameters of fast particle beams and shock front.

  2. The differential algebra based multiple level fast multipole algorithm for 3D space charge field calculation and photoemission simulation

    SciTech Connect

    None, None

    2015-09-28

    Coulomb interaction between charged particles inside a bunch is one of the most importance collective effects in beam dynamics, becoming even more significant as the energy of the particle beam is lowered to accommodate analytical and low-Z material imaging purposes such as in the time resolved Ultrafast Electron Microscope (UEM) development currently underway at Michigan State University. In addition, space charge effects are the key limiting factor in the development of ultrafast atomic resolution electron imaging and diffraction technologies and are also correlated with an irreversible growth in rms beam emittance due to fluctuating components of the nonlinear electron dynamics. In the short pulse regime used in the UEM, space charge effects also lead to virtual cathode formation in which the negative charge of the electrons emitted at earlier times, combined with the attractive surface field, hinders further emission of particles and causes a degradation of the pulse properties. Space charge and virtual cathode effects and their remediation are core issues for the development of the next generation of high-brightness UEMs. Since the analytical models are only applicable for special cases, numerical simulations, in addition to experiments, are usually necessary to accurately understand the space charge effect. In this paper we will introduce a grid-free differential algebra based multiple level fast multipole algorithm, which calculates the 3D space charge field for n charged particles in arbitrary distribution with an efficiency of O(n), and the implementation of the algorithm to a simulation code for space charge dominated photoemission processes.

  3. Gabor-domain optical coherence microscopy with integrated dual-axis MEMS scanner for fast 3D imaging and metrology

    NASA Astrophysics Data System (ADS)

    Canavesi, Cristina; Cogliati, Andrea; Hayes, Adam; Santhanam, Anand P.; Tankam, Patrice; Rolland, Jannick P.

    2015-10-01

    Fast, robust, nondestructive 3D imaging is needed for characterization of microscopic structures in industrial and clinical applications. A custom micro-electromechanical system (MEMS)-based 2D scanner system was developed to achieve 55 kHz A-scan acquisition in a Gabor-domain optical coherence microscopy (GD-OCM) instrument with a novel multilevel GPU architecture for high-speed imaging. GD-OCM yields high-definition volumetric imaging with dynamic depth of focusing through a bio-inspired liquid lens-based microscope design, which has no moving parts and is suitable for use in a manufacturing setting or in a medical environment. A dual-axis MEMS mirror was chosen to replace two single-axis galvanometer mirrors; as a result, the astigmatism caused by the mismatch between the optical pupil and the scanning location was eliminated and a 12x reduction in volume of the scanning system was achieved. Imaging at an invariant resolution of 2 μm was demonstrated throughout a volume of 1 × 1 × 0.6 mm3, acquired in less than 2 minutes. The MEMS-based scanner resulted in improved image quality, increased robustness and lighter weight of the system - all factors that are critical for on-field deployment. A custom integrated feedback system consisting of a laser diode and a position-sensing detector was developed to investigate the impact of the resonant frequency of the MEMS and the driving signal of the scanner on the movement of the mirror. Results on the metrology of manufactured materials and characterization of tissue samples with GD-OCM are presented.

  4. The differential algebra based multiple level fast multipole algorithm for 3D space charge field calculation and photoemission simulation

    DOE PAGES

    None, None

    2015-09-28

    Coulomb interaction between charged particles inside a bunch is one of the most importance collective effects in beam dynamics, becoming even more significant as the energy of the particle beam is lowered to accommodate analytical and low-Z material imaging purposes such as in the time resolved Ultrafast Electron Microscope (UEM) development currently underway at Michigan State University. In addition, space charge effects are the key limiting factor in the development of ultrafast atomic resolution electron imaging and diffraction technologies and are also correlated with an irreversible growth in rms beam emittance due to fluctuating components of the nonlinear electron dynamics.more » In the short pulse regime used in the UEM, space charge effects also lead to virtual cathode formation in which the negative charge of the electrons emitted at earlier times, combined with the attractive surface field, hinders further emission of particles and causes a degradation of the pulse properties. Space charge and virtual cathode effects and their remediation are core issues for the development of the next generation of high-brightness UEMs. Since the analytical models are only applicable for special cases, numerical simulations, in addition to experiments, are usually necessary to accurately understand the space charge effect. In this paper we will introduce a grid-free differential algebra based multiple level fast multipole algorithm, which calculates the 3D space charge field for n charged particles in arbitrary distribution with an efficiency of O(n), and the implementation of the algorithm to a simulation code for space charge dominated photoemission processes.« less

  5. MO-G-17A-03: MR-Based Cortical Bone Segmentation for PET Attenuation Correction with a Non-UTE 3D Fast GRE Sequence

    SciTech Connect

    Ai, H; Pan, T; Hwang, K

    2014-06-15

    Purpose: To determine the feasibility of identifying cortical bone on MR images with a short-TE 3D fast-GRE sequence for attenuation correction of PET data in PET/MR. Methods: A water-fat-bone phantom was constructed with two pieces of beef shank. MR scans were performed on a 3T MR scanner (GE Discovery™ MR750). A 3D GRE sequence was first employed to measure the level of residual signal in cortical bone (TE{sub 1}/TE{sub 2}/TE{sub 3}=2.2/4.4/6.6ms, TR=20ms, flip angle=25°). For cortical bone segmentation, a 3D fast-GRE sequence (TE/TR=0.7/1.9ms, acquisition voxel size=2.5×2.5×3mm{sup 3}) was implemented along with a 3D Dixon sequence (TE{sub 1}/TE{sub 2}/TR=1.2/2.3/4.0ms, acquisition voxel size=1.25×1.25×3mm{sup 3}) for water/fat imaging. Flip angle (10°), acquisition bandwidth (250kHz), FOV (480×480×144mm{sup 3}) and reconstructed voxel size (0.94×0.94×1.5mm{sup 3}) were kept the same for both sequences. Soft tissue and fat tissue were first segmented on the reconstructed water/fat image. A tissue mask was created by combining the segmented water/fat masks, which was then applied on the fast-GRE image (MRFGRE). A second mask was created to remove the Gibbs artifacts present in regions in close vicinity to the phantom. MRFGRE data was smoothed with a 3D anisotropic diffusion filter for noise reduction, after which cortical bone and air was separated using a threshold determined from the histogram. Results: There is signal in the cortical bone region in the 3D GRE images, indicating the possibility of separating cortical bone and air based on signal intensity from short-TE MR image. The acquisition time for the 3D fast-GRE sequence was 17s, which can be reduced to less than 10s with parallel imaging. The attenuation image created from water-fat-bone segmentation is visually similar compared to reference CT. Conclusion: Cortical bone and air can be separated based on intensity in MR image with a short-TE 3D fast-GRE sequence. Further research is required

  6. Novel, fast and efficient image-based 3D modeling method and its application in fracture risk evaluation.

    PubMed

    Li, Dan; Xiao, Zhitao; Wang, Gang; Zhao, Guoqing

    2014-06-01

    Constructing models based on computed tomography images for finite element analysis (FEA) is challenging under pathological conditions. In the present study, an innovative method was introduced that uses Siemens syngo(®) 3D software for processing models and Mimics software for further modeling. Compared with the slice-by-slice traditional manual margin discrimination, the new 3D modeling method utilizes automatic tissue margin determination and 3D cutting using syngo software. The modeling morphologies of the two methods were similar; however, the 3D modeling method was 8-10 times faster than the traditional method, particularly in cases with osteoporosis and osteophytes. A comparative FEA study of the lumbar spines of young and elderly patients, on the basis of the models constructed by the 3D modeling method, showed peak stress elevation in the vertebrae of elderly patients. Stress distribution was homogeneous in the entire vertebrae of young individuals. By contrast, stress redistribution in the vertebrae of the elderly was concentrated in the anterior cortex of the vertebrae, which explains the high fracture risk mechanism in elderly individuals. In summary, the new 3D modeling method is highly efficient, accurate and faster than traditional methods. The method also allows reliable FEA in pathological cases with osteoporosis and osteophytes.

  7. Novel, fast and efficient image-based 3D modeling method and its application in fracture risk evaluation

    PubMed Central

    LI, DAN; XIAO, ZHITAO; WANG, GANG; ZHAO, GUOQING

    2014-01-01

    Constructing models based on computed tomography images for finite element analysis (FEA) is challenging under pathological conditions. In the present study, an innovative method was introduced that uses Siemens syngo® 3D software for processing models and Mimics software for further modeling. Compared with the slice-by-slice traditional manual margin discrimination, the new 3D modeling method utilizes automatic tissue margin determination and 3D cutting using syngo software. The modeling morphologies of the two methods were similar; however, the 3D modeling method was 8–10 times faster than the traditional method, particularly in cases with osteoporosis and osteophytes. A comparative FEA study of the lumbar spines of young and elderly patients, on the basis of the models constructed by the 3D modeling method, showed peak stress elevation in the vertebrae of elderly patients. Stress distribution was homogeneous in the entire vertebrae of young individuals. By contrast, stress redistribution in the vertebrae of the elderly was concentrated in the anterior cortex of the vertebrae, which explains the high fracture risk mechanism in elderly individuals. In summary, the new 3D modeling method is highly efficient, accurate and faster than traditional methods. The method also allows reliable FEA in pathological cases with osteoporosis and osteophytes. PMID:24926348

  8. MHD simulations of three-dimensional resistive reconnection in a cylindrical plasma column

    NASA Astrophysics Data System (ADS)

    Striani, E.; Mignone, A.; Vaidya, B.; Bodo, G.; Ferrari, A.

    2016-11-01

    Magnetic reconnection is a plasma phenomenon where a topological rearrangement of magnetic field lines with opposite polarity results in dissipation of magnetic energy into heat, kinetic energy and particle acceleration. Such a phenomenon is considered as an efficient mechanism for energy release in laboratory and astrophysical plasmas. An important question is how to make the process fast enough to account for observed explosive energy releases. The classical model for steady state magnetic reconnection predicts reconnection times scaling as S1/2 (where S is the Lundquist number) and yields time-scales several order of magnitude larger than the observed ones. Earlier two-dimensional MHD simulations showed that for large Lundquist number the reconnection time becomes independent of S (`fast reconnection' regime) due to the presence of the secondary tearing instability that takes place for S ≳ 1 × 104. We report on our 3D MHD simulations of magnetic reconnection in a magnetically confined cylindrical plasma column under either a pressure balanced or a force-free equilibrium and compare the results with 2D simulations of a circular current sheet. We find that the 3D instabilities acting on these configurations result in a fragmentation of the initial current sheet in small filaments, leading to enhanced dissipation rate that becomes independent of the Lundquist number already at S ≃ 1 × 103.

  9. Remote z-scanning with a macroscopic voice coil motor for fast 3D multiphoton laser scanning microscopy

    PubMed Central

    Rupprecht, Peter; Prendergast, Andrew; Wyart, Claire; Friedrich, Rainer W

    2016-01-01

    There is a high demand for 3D multiphoton imaging in neuroscience and other fields but scanning in axial direction presents technical challenges. We developed a focusing technique based on a remote movable mirror that is conjugate to the specimen plane and translated by a voice coil motor. We constructed cost-effective z-scanning modules from off-the-shelf components that can be mounted onto standard multiphoton laser scanning microscopes to extend scan patterns from 2D to 3D. Systems were designed for large objectives and provide high resolution, high speed and a large z-scan range (>300 μm). We used these systems for 3D multiphoton calcium imaging in the adult zebrafish brain and measured odor-evoked activity patterns across >1500 neurons with single-neuron resolution and high signal-to-noise ratio. PMID:27231612

  10. Application of the Finite Orbit Width Version of the CQL3D Code to Transport of Fast Ions

    NASA Astrophysics Data System (ADS)

    Petrov, Yu. V.; Harvey, R. W.

    2016-10-01

    The CQL3D bounce-averaged Fokker-Planck (FP) code now includes the ``fully'' neoclassical version in which the diffusion and advection processes are averaged over actual drift orbits, rather than using a 1st-order expansion. Incorporation of Finite-Orbit-Width (FOW) effects results in neoclassical radial transport caused by collisions, RF wave heating and by toroidal electric field (radial pinch). We apply the CQL3D-full-FOW code to study the thermalization and radial transport of high-energy particles, such as alpha-particles produced by fusion in ITER or deuterons from NBI in NSTX, under effect of their interaction with auxiliary RF waves. A particular attention is given to visualization of transport in 3D space of velocity +major-radius coordinates. Supported by USDOE Grants FC02-01ER54649, FG02-04ER54744, and SC0006614.

  11. Quantitative, comprehensive, analytical model for magnetic reconnection in Hall magnetohydrodynamics.

    PubMed

    Simakov, Andrei N; Chacón, L

    2008-09-05

    Dissipation-independent, or "fast", magnetic reconnection has been observed computationally in Hall magnetohydrodynamics (MHD) and predicted analytically in electron MHD. However, a quantitative analytical theory of reconnection valid for arbitrary ion inertial lengths, d{i}, has been lacking and is proposed here for the first time. The theory describes a two-dimensional reconnection diffusion region, provides expressions for reconnection rates, and derives a formal criterion for fast reconnection in terms of dissipation parameters and d{i}. It also confirms the electron MHD prediction that both open and elongated diffusion regions allow fast reconnection, and reveals strong dependence of the reconnection rates on d{i}.

  12. Development and anlysis of fast, approximate 3D Algorithms for interpretation of multi-component induction logging data

    SciTech Connect

    David L. Alumbaugh

    2006-07-03

    This report addresses the effects of electrical anisotropy on the 3D inversion of single-well induction logging data when anisotropy is not considered. Of concern are possible artifacts that may lead to an incorrect interpretation of the formation about the borehole. Comparison is made of 3D isotropic inversion on a suite of model data, with and without anisotropy, consisting of an infinite layer and layer terminated at the borehole. In both cases, the layer dip (or well deviation) is varied. Inversion of the anisotropic data result in an overestimate of the layer conductivity, and the lateral extent of the layer about the borehole.

  13. 3D in the Fast Lane: Render as You Go with the Latest OpenGL Boards.

    ERIC Educational Resources Information Center

    Sauer, Jeff; Murphy, Sam

    1997-01-01

    NT OpenGL hardware allows modelers and animators to work at relatively inexpensive NT workstations in their own offices or homes previous to shared space and workstation time in expensive studios. Rates seven OpenGL boards and two QuickDraw 3D accelerator boards for Mac users on overall value, wireframe and texture rendering, 2D acceleration, and…

  14. VIRO 3D: fast three-dimensional full-body scanning for humans and other living objects

    NASA Astrophysics Data System (ADS)

    Stein, Norbert; Minge, Bernhard

    1998-03-01

    The development of a family of partial and whole body scanners provides a complete technology for fully three-dimensional and contact-free scans on human bodies or other living objects within seconds. This paper gives insight into the design and the functional principles of the whole body scanner VIRO 3D operating on the basis of the laser split-beam method. The arrangement of up to 24 camera/laser combinations, thus dividing the area into different camera fields and an all- around sensor configuration travelling in vertical direction allow the complete 360-degree-scan of an object within 6 - 20 seconds. Due to a special calibration process the different sensors are matched and the measured data are combined. Up to 10 million 3D measuring points with a resolution of approximately 1 mm are processed in all coordinate axes to generate a 3D model. By means of high-performance processors in combination with real-time image processing chips the image data from almost any number of sensors can be recorded and evaluated synchronously in video real-time. VIRO 3D scanning systems have already been successfully implemented in various applications and will open up new perspectives in different other fields, ranging from industry, orthopaedic medicine, plastic surgery to art and photography.

  15. Fast Volumetric Spatial-Spectral MR Imaging of Hyperpolarized 13C-Labeled Compounds using Multiple Echo 3D bSSFP

    PubMed Central

    Perman, William H.; Bhattacharya, Pratip; Leupold, Jochen; Lin, Alexander P.; Harris, Kent C.; Norton, Valerie A.; Hovener, Jan B.; Ross, Brian D.

    2010-01-01

    PURPOSE The goal of this work was to develop a fast 3D chemical shift imaging technique for the non-invasive measurement of hyperpolarized 13C-labeled substrates and metabolic products at low concentration. MATERIALS AND METHODS Multiple echo 3D balanced steady state MR imaging (ME-3DbSSFP) was performed in vitro on a syringe containing hyperpolarized [1,3,3-2H3; 1-13C]2-hydroxyethylpropionate (HEP) adjacent to a 13C-enriched acetate phantom, and in vivo on a rat before and after IV injection of hyperpolarized HEP at 1.5 T. Chemical shift images of the hyperpolarized HEP were derived from the multiple echo data by Fourier transformation along the echoes on a voxel by voxel basis for each slice of the 3D data set. RESULTS ME-3DbSSFP imaging was able to provide chemical shift images of hyperpolarized HEP in vivo, and in a rat with isotropic 7 mm spatial resolution, 93 Hz spectral resolution and 16 second temporal resolution for a period greater than 45 seconds. CONCLUSION Multiple echo 3D bSSFP imaging can provide chemical shift images of hyperpolarized 13C-labeled compounds in vivo with relatively high spatial resolution and moderate spectral resolution. The increased signal-to-noise ratio (SNR) of this 3D technique will enable the detection of hyperpolarized 13C-labeled metabolites at lower concentrations as compared to a 2D technique. PMID:20171034

  16. Atom pair 2D-fingerprints perceive 3D-molecular shape and pharmacophores for very fast virtual screening of ZINC and GDB-17.

    PubMed

    Awale, Mahendra; Reymond, Jean-Louis

    2014-07-28

    Three-dimensional (3D) molecular shape and pharmacophores are important determinants of the biological activity of organic molecules; however, a precise computation of 3D-shape is generally too slow for virtual screening of very large databases. A reinvestigation of the concept of atom pairs initially reported by Carhart et al. and extended by Schneider et al. showed that a simple atom pair fingerprint (APfp) counting atom pairs at increasing topological distances in 2D-structures without atom property assignment correlates with various representations of molecular shape extracted from the 3D-structures. A related 55-dimensional atom pair fingerprint extended with atom properties (Xfp) provided an efficient pharmacophore fingerprint with good performance for ligand-based virtual screening such as the recovery of active compounds from decoys in DUD, and overlap with the ROCS 3D-pharmacophore scoring function. The APfp and Xfp data were organized for web-based extremely fast nearest-neighbor searching in ZINC (13.5 M compounds) and GDB-17 (50 M random subset) freely accessible at www.gdb.unibe.ch .

  17. A novel structured dictionary for fast processing of 3D medical images, with application to computed tomography restoration and denoising

    NASA Astrophysics Data System (ADS)

    Karimi, Davood; Ward, Rabab K.

    2016-03-01

    Sparse representation of signals in learned overcomplete dictionaries has proven to be a powerful tool with applications in denoising, restoration, compression, reconstruction, and more. Recent research has shown that learned overcomplete dictionaries can lead to better results than analytical dictionaries such as wavelets in almost all image processing applications. However, a major disadvantage of these dictionaries is that their learning and usage is very computationally intensive. In particular, finding the sparse representation of a signal in these dictionaries requires solving an optimization problem that leads to very long computational times, especially in 3D image processing. Moreover, the sparse representation found by greedy algorithms is usually sub-optimal. In this paper, we propose a novel two-level dictionary structure that improves the performance and the speed of standard greedy sparse coding methods. The first (i.e., the top) level in our dictionary is a fixed orthonormal basis, whereas the second level includes the atoms that are learned from the training data. We explain how such a dictionary can be learned from the training data and how the sparse representation of a new signal in this dictionary can be computed. As an application, we use the proposed dictionary structure for removing the noise and artifacts in 3D computed tomography (CT) images. Our experiments with real CT images show that the proposed method achieves results that are comparable with standard dictionary-based methods while substantially reducing the computational time.

  18. Computing the 3-D structure of viruses from unoriented cryo electron microscope images: a fast algorithm for a statistical approach.

    PubMed

    Lee, Junghoon; Zheng, Yili; Doerschuk, Peter C

    2006-01-01

    In a cryo electron microscopy experiment, the data is noisy 2-D projection images of the 3-D electron scattering intensity where the orientation of the projections is not known. In previous work we have developed a solution for this problem based on a maximum likelihood estimator that is computed by an expectation maximization algorithm. In the expectation maximization algorithm the expensive step is the expectation which requires numerical evaluation of 3- or 5-dimensional integrations of a square matrix of dimension equal to the number of Fourier series coefficients used to describe the 3-D reconstruction. By taking advantage of the rotational properties of spherical harmonics, we can reduce the integrations of a matrix to integrations of a scalar. The key property is that a rotated spherical harmonic can be expressed as a linear combination of the other harmonics of the same order and the weights in the linear combination factor so that each of the three factors is a function of only one of the Euler angles describing the orientation of the projection. Numerical example of the reconstructions is provided based on Nudaurelia Omega Capensis virus.

  19. Electron Layer Dissipation Mechanisms in Driven Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Dorfman, S.; Ji, H.; Yamada, M.; McGeehan, B.; Oz, E.; Schroeder, J.; Daughton, W.; Roytershteyn, V.; Ren, Y.

    2008-11-01

    An open question in magnetic reconnection is the nature of the dissipation mechanism(s) responsible for fast reconnection rates in laboratory and astrophysical plasmas. In 2-D collisionless particle in cell simulations, the off-diagonal terms in the electron pressure tensor provide the necessary force balance at the electron diffusion layer center [1]. Recent comparisons between the Magnetic Reconnection Experiment (MRX) and a well-matched PIC code have shown that this mechanism is insufficient to balance the reconnecting electric field in MRX [2,3]. Candidate mechanisms not present in the simulation are under investigation, including electromagnetic fluctuations and other 3-D effects such as layer distortions. The relationship between fluctuations and equilibrium parameters such as the outflow current and layer width is examined, and first investigations into the 3-D symmetry of the layer are presented. On the simulation side, analysis is underway to gain further insight into the nature of the off-diagonal pressure tensor terms, especially effects due to the driven nature of the simulation. [1] M. Hesse, et al., Phys. Plasmas, 6:1781 (1999). [2] S. Dorfman, et al., submitted to Phys. Plasmas (2008). [3] H. Ji, et al., Geophys. Res. Lett., 35, L13106 (2008). This work was supported by NDSEG, DOE, NASA, and NSF.

  20. Multi-Stencil Streamline Fast Marching: A General 3-D Framework to Determine Myocardial Thickness and Transmurality in Late Enhancement Images.

    PubMed

    Merino-Caviedes, Susana; Cordero-Grande, Lucilio; Revilla-Orodea, Ana; Sevilla-Ruiz, Teresa; Pérez, M Teresa; Martín-Fernández, Marcos; Alberola-López, Carlos

    2014-01-01

    We propose a fully 3-D methodology for the computation of myocardial nonviable tissue transmurality in contrast enhanced magnetic resonance images. The outcome is a continuous map defined within the myocardium where not only current state-of-the-art measures of transmurality can be calculated, but also information on the location of nonviable tissue is preserved. The computation is done by means of a partial differential equation framework we have called multi-stencil streamline fast marching. Using it, the myocardial and scarred tissue thickness is simultaneously computed. Experimental results show that the proposed 3-D method allows for the computation of transmurality in myocardial regions where current 2-D methods are not able to as conceived, and it also provides more robust and accurate results in situations where the assumptions on which current 2-D methods are based-i.e., there is a visible endocardial contour and its corresponding epicardial points lie on the same slice-, are not met.

  1. A line integration method for the treatment of 3D domain integrals and accelerated by the fast multipole method in the BEM

    NASA Astrophysics Data System (ADS)

    Wang, Qiao; Zhou, Wei; Cheng, Yonggang; Ma, Gang; Chang, Xiaolin

    2017-04-01

    A line integration method (LIM) is proposed to calculate the domain integrals for 3D problems. In the proposed method, the domain integrals are transformed into boundary integrals and only line integrals on straight lines are needed to be computed. A background cell structure is applied to further simplify the line integrals and improve the accuracy. The method creates elements only on the boundary, and the integral lines are created from the boundary elements. The procedure is quite suitable for the boundary element method, and we have applied it to 3D situations. Directly applying the method is time-consuming since the complexity of the computational time is O( NM), where N and M are the numbers of nodes and lines, respectively. To overcome this problem, the fast multipole method is used with the LIM for large-scale computation. The numerical results show that the proposed method is efficient and accurate.

  2. Fast Magnetic Reconnection and Particle Acceleration in Relativistic Low-density Electron-Positron Plasmas without Guide Field

    NASA Astrophysics Data System (ADS)

    Bessho, Naoki; Bhattacharjee, A.

    2012-05-01

    Magnetic reconnection and particle acceleration in relativistic Harris sheets in low-density electron-positron plasmas with no guide field have been studied by means of two-dimensional particle-in-cell simulations. Reconnection rates are of the order of one when the background density in a Harris sheet is of the order of 1% of the density in the current sheet, which is consistent with previous results in the non-relativistic regime. It has been demonstrated that the increase of the Lorentz factors of accelerated particles significantly enhances the collisionless resistivity needed to sustain a large reconnection electric field. It is shown analytically and numerically that the energy spectrum of accelerated particles near the X-line is the product of a power law and an exponential function of energy, γ-1/4exp (- aγ1/2), where γ is the Lorentz factor and a is a constant. However, in the low-density regime, while the most energetic particles are produced near X-lines, many more particles are energized within magnetic islands. Particles are energized in contracting islands by multiple reflection, but the mechanism is different from Fermi acceleration in magnetic islands for magnetized particles in the presence of a guide field. In magnetic islands, strong core fields are generated and plasma beta values are reduced. As a consequence, the fire-hose instability condition is not satisfied in most of the island region, and island contraction and particle acceleration can continue. In island coalescence, reconnection between two islands can accelerate some particles, however, many particles are decelerated and cooled, which is contrary to what has been discussed in the literature on particle acceleration due to reconnection in non-relativistic hydrogen plasmas.

  3. Development of fast patient position verification software using 2D-3D image registration and its clinical experience

    PubMed Central

    Mori, Shinichiro; Kumagai, Motoki; Miki, Kentaro; Fukuhara, Riki; Haneishi, Hideaki

    2015-01-01

    To improve treatment workflow, we developed a graphic processing unit (GPU)-based patient positional verification software application and integrated it into carbon-ion scanning beam treatment. Here, we evaluated the basic performance of the software. The algorithm provides 2D/3D registration matching using CT and orthogonal X-ray flat panel detector (FPD) images. The participants were 53 patients with tumors of the head and neck, prostate or lung receiving carbon-ion beam treatment. 2D/3D-ITchi-Gime (ITG) calculation accuracy was evaluated in terms of computation time and registration accuracy. Registration calculation was determined using the similarity measurement metrics gradient difference (GD), normalized mutual information (NMI), zero-mean normalized cross-correlation (ZNCC), and their combination. Registration accuracy was dependent on the particular metric used. Representative examples were determined to have target registration error (TRE) = 0.45 ± 0.23 mm and angular error (AE) = 0.35 ± 0.18° with ZNCC + GD for a head and neck tumor; TRE = 0.12 ± 0.07 mm and AE = 0.16 ± 0.07° with ZNCC for a pelvic tumor; and TRE = 1.19 ± 0.78 mm and AE = 0.83 ± 0.61° with ZNCC for lung tumor. Calculation time was less than 7.26 s.The new registration software has been successfully installed and implemented in our treatment process. We expect that it will improve both treatment workflow and treatment accuracy. PMID:26081313

  4. Development of fast patient position verification software using 2D-3D image registration and its clinical experience.

    PubMed

    Mori, Shinichiro; Kumagai, Motoki; Miki, Kentaro; Fukuhara, Riki; Haneishi, Hideaki

    2015-09-01

    To improve treatment workflow, we developed a graphic processing unit (GPU)-based patient positional verification software application and integrated it into carbon-ion scanning beam treatment. Here, we evaluated the basic performance of the software. The algorithm provides 2D/3D registration matching using CT and orthogonal X-ray flat panel detector (FPD) images. The participants were 53 patients with tumors of the head and neck, prostate or lung receiving carbon-ion beam treatment. 2D/3D-ITchi-Gime (ITG) calculation accuracy was evaluated in terms of computation time and registration accuracy. Registration calculation was determined using the similarity measurement metrics gradient difference (GD), normalized mutual information (NMI), zero-mean normalized cross-correlation (ZNCC), and their combination. Registration accuracy was dependent on the particular metric used. Representative examples were determined to have target registration error (TRE) = 0.45 ± 0.23 mm and angular error (AE) = 0.35 ± 0.18° with ZNCC + GD for a head and neck tumor; TRE = 0.12 ± 0.07 mm and AE = 0.16 ± 0.07° with ZNCC for a pelvic tumor; and TRE = 1.19 ± 0.78 mm and AE = 0.83 ± 0.61° with ZNCC for lung tumor. Calculation time was less than 7.26 s.The new registration software has been successfully installed and implemented in our treatment process. We expect that it will improve both treatment workflow and treatment accuracy.

  5. Fluxon Modeling of Eruptive Events With and Without Reconnection

    NASA Astrophysics Data System (ADS)

    DeForest, Craig; Rachmeler, L.; Davey, A.; Kankelborg, C.

    2007-05-01

    Fluxon MHD models represent the coronal magnetic field as a "skeleton" of discretized field lines. This quasi-Lagrangian approach eliminates numerical resistivity and allows 3-D time-dependent plasma simulation in a desktop workstation.Using our fluxon code, FLUX, we have demonstrated that ideal MHD instabilities can drive fast eruptive events even in the complete absence of magnetic reconnection. The mechanism ("herniation") is probably not the main driver of fast CMEs but may be applicable to microjets, macrospicules, or other small scale events where vortical flows are present in the solar atmosphere. In this presentation, we use time-dependent simulations to demonstrate energy release in several idealized plasma systems with and without magnetic reconnection.This work was funded by NASA's LWS and SHP-SR&T programs.

  6. SU-E-J-251: Fast MR-Based DRR Generation Using Highly Undersampled 3D Radial Trajectories

    SciTech Connect

    Pereira, G; Traughber, B; Traughber, M; Hu, L; Su, K; Muzic, R

    2014-06-01

    Purpose: The construction of a digitally reconstructed radiograph (DRR) from a magnetic resonance image (MRI) is possible if the cortical bone signal can be acquired and separated from air and soft tissue. This may be accomplished by subtracting a long echo-time, in-phase, gradient echo (GRE) image volume from an ultra-short echo time free induction decay (FID) image to produce a bone-enhanced (BE) image that reveals cortical bone. One limitation of this approach is the length of time required for data acquisition, which can limit the quality of the DRRs due to patient and organ motion. This study aimed to significantly reduce the acquisition time without compromising DRR quality. Methods: Brain data were acquired from two volunteers using a 3T MR scanner (Ingenia, Philips Healthcare). The FID and GRE images were acquired in a single acquisition using a 3D radial readout sequence with the following parameters: TE1=0.142ms (ultra-short), TE2=2.197ms (nearly in-phase), 2*2*2mm3 isotropic voxels, 250*250*250mm3 FOV. To reduce the acquisition time, k-space was sampled at 75, 50 and 25% of a full 3D sphere . The TE2 image was subtracted from the TE1 image to generate the BE images. The BE images were used to generate DRRs using the Pinnacle treatment planning system (Philips-version 9.2). The quality of the DRRs was evaluated qualitatively by 5 board certified medical physicists for clinical usefulness. Results: The acquisition time for 75, 50 and 25% sampling schemes were 219s, 146s, and 73s, respectively, the latter of which was a four-fold reduction in scan time compared to a 300s fully-sampled acquisition. All DRRs obtained were of acceptable quality and were shown to have sufficient information for clinical 2D image matching. Conclusion: Undersampling k-space while maintaining the same range of frequency information results in significantly reduced scan time and clinically acceptable DRR image quality. Drs. B Traughber and R Muzic have research support from Philips

  7. Atlas and feature based 3D pathway visualization enhancement for skull base pre-operative fast planning from head CT

    NASA Astrophysics Data System (ADS)

    Aghdasi, Nava; Li, Yangming; Berens, Angelique; Moe, Kris S.; Bly, Randall A.; Hannaford, Blake

    2015-03-01

    Minimally invasive neuroendoscopic surgery provides an alternative to open craniotomy for many skull base lesions. These techniques provides a great benefit to the patient through shorter ICU stays, decreased post-operative pain and quicker return to baseline function. However, density of critical neurovascular structures at the skull base makes planning for these procedures highly complex. Furthermore, additional surgical portals are often used to improve visualization and instrument access, which adds to the complexity of pre-operative planning. Surgical approach planning is currently limited and typically involves review of 2D axial, coronal, and sagittal CT and MRI images. In addition, skull base surgeons manually change the visualization effect to review all possible approaches to the target lesion and achieve an optimal surgical plan. This cumbersome process relies heavily on surgeon experience and it does not allow for 3D visualization. In this paper, we describe a rapid pre-operative planning system for skull base surgery using the following two novel concepts: importance-based highlight and mobile portal. With this innovation, critical areas in the 3D CT model are highlighted based on segmentation results. Mobile portals allow surgeons to review multiple potential entry portals in real-time with improved visualization of critical structures located inside the pathway. To achieve this we used the following methods: (1) novel bone-only atlases were manually generated, (2) orbits and the center of the skull serve as features to quickly pre-align the patient's scan with the atlas, (3) deformable registration technique was used for fine alignment, (4) surgical importance was assigned to each voxel according to a surgical dictionary, and (5) pre-defined transfer function was applied to the processed data to highlight important structures. The proposed idea was fully implemented as independent planning software and additional

  8. A fast experimental beam hardening correction method for accurate bone mineral measurements in 3D μCT imaging system.

    PubMed

    Koubar, Khodor; Bekaert, Virgile; Brasse, David; Laquerriere, Patrice

    2015-06-01

    Bone mineral density plays an important role in the determination of bone strength and fracture risks. Consequently, it is very important to obtain accurate bone mineral density measurements. The microcomputerized tomography system provides 3D information about the architectural properties of bone. Quantitative analysis accuracy is decreased by the presence of artefacts in the reconstructed images, mainly due to beam hardening artefacts (such as cupping artefacts). In this paper, we introduced a new beam hardening correction method based on a postreconstruction technique performed with the use of off-line water and bone linearization curves experimentally calculated aiming to take into account the nonhomogeneity in the scanned animal. In order to evaluate the mass correction rate, calibration line has been carried out to convert the reconstructed linear attenuation coefficient into bone masses. The presented correction method was then applied on a multimaterial cylindrical phantom and on mouse skeleton images. Mass correction rate up to 18% between uncorrected and corrected images were obtained as well as a remarkable improvement of a calculated mouse femur mass has been noticed. Results were also compared to those obtained when using the simple water linearization technique which does not take into account the nonhomogeneity in the object.

  9. A capacitive DAC with custom 3-D 1-fF MOM unit capacitors optimized for fast-settling routing in high speed SAR ADCs

    NASA Astrophysics Data System (ADS)

    Chixiao, Chen; Jixuan, Xiang; Huabin, Chen; Jun, Xu; Fan, Ye; Ning, Li; Junyan, Ren

    2015-05-01

    Asynchronous successive approximation register (SAR) analog-to-digital converters (ADC) feature high energy efficiency but medium performance. From the point of view of speed, the key bottleneck is the unit capacitor size. In this paper, a small size three-dimensional (3-D) metal—oxide—metal (MOM) capacitor is proposed. The unit capacitor has a capacitance of 1-fF. It shapes as an umbrella, which is designed for fast settling consideration. A comparison among the proposed capacitor with other 3-D MOM capacitors is also given in the paper. To demonstrate the effectiveness of the MOM capacitor, a 6-b capacitive DAC is implemented in TSMC 1P9M 65 nm LP CMOS technology. The DAC consumes a power dissipation of 0.16 mW at the rate of 100 MS/s, excluding a source-follower based output buffer. Static measurement result shows that INL is less than ±1 LSB and DNL is less than ±0.5 LSB. In addition, a 100 MS/s 9-bit SAR ADC with the proposed 3-D capacitor is simulated.

  10. Automatic localization of target vertebrae in spine surgery using fast CT-to-fluoroscopy (3D-2D) image registration

    NASA Astrophysics Data System (ADS)

    Otake, Y.; Schafer, S.; Stayman, J. W.; Zbijewski, W.; Kleinszig, G.; Graumann, R.; Khanna, A. J.; Siewerdsen, J. H.

    2012-02-01

    Localization of target vertebrae is an essential step in minimally invasive spine surgery, with conventional methods relying on "level counting" - i.e., manual counting of vertebrae under fluoroscopy starting from readily identifiable anatomy (e.g., the sacrum). The approach requires an undesirable level of radiation, time, and is prone to counting errors due to the similar appearance of vertebrae in projection images; wrong-level surgery occurs in 1 of every ~3000 cases. This paper proposes a method to automatically localize target vertebrae in x-ray projections using 3D-2D registration between preoperative CT (in which vertebrae are preoperatively labeled) and intraoperative fluoroscopy. The registration uses an intensity-based approach with a gradient-based similarity metric and the CMA-ES algorithm for optimization. Digitally reconstructed radiographs (DRRs) and a robust similarity metric are computed on GPU to accelerate the process. Evaluation in clinical CT data included 5,000 PA and LAT projections randomly perturbed to simulate human variability in setup of mobile intraoperative C-arm. The method demonstrated 100% success for PA view (projection error: 0.42mm) and 99.8% success for LAT view (projection error: 0.37mm). Initial implementation on GPU provided automatic target localization within about 3 sec, with further improvement underway via multi-GPU. The ability to automatically label vertebrae in fluoroscopy promises to streamline surgical workflow, improve patient safety, and reduce wrong-site surgeries, especially in large patients for whom manual methods are time consuming and error prone.

  11. On the numerical simulation of the ablative Rayleigh-Taylor instability in laser-driven ICF targets using the FastRad3D code

    NASA Astrophysics Data System (ADS)

    Bates, Jason; Schmitt, Andrew; Zalesak, Steve

    2015-11-01

    The ablative Rayleigh-Taylor (RT) instability is a key factor in the performance of directly-drive inertial-confinement-fusion (ICF) targets. Although this subject has been studied for quite some time, the accurate simulation of the ablative RT instability has proven to be a challenging task for many radiation hydrodynamics codes, particularly when it comes to capturing the ablatively-stabilized region of the linear dispersion spectrum and modeling ab initio perturbations. In this poster, we present results from recent two-dimensional numerical simulations of the ablative RT instability that were performed using the Eulerian code FastRad3D at the U.S. Naval Research Laboratory. We consider both planar and spherical geometries, low and moderate-Z target materials, different laser wavelengths and where possible, compare our findings with experiment data, linearized theory and/or results from other radiation hydrodynamics codes. Overall, we find that FastRad3D is capable of simulating the ablative RT instability quite accurately, although some uncertainties/discrepancies persist. We discuss these issues, as well as some of the numerical challenges associated with modeling this class of problems. Work supported by U.S. DOE/NNSA.

  12. A fast rigid-registration method of inferior limb X-ray image and 3D CT images for TKA surgery

    NASA Astrophysics Data System (ADS)

    Ito, Fumihito; O. D. A, Prima; Uwano, Ikuko; Ito, Kenzo

    2010-03-01

    In this paper, we propose a fast rigid-registration method of inferior limb X-ray films (two-dimensional Computed Radiography (CR) images) and three-dimensional Computed Tomography (CT) images for Total Knee Arthroplasty (TKA) surgery planning. The position of the each bone, such as femur and tibia (shin bone), in X-ray film and 3D CT images is slightly different, and we must pay attention how to use the two different images, since X-ray film image is captured in the standing position, and 3D CT is captured in decubitus (face up) position, respectively. Though the conventional registration mainly uses cross-correlation function between two images,and utilizes optimization techniques, it takes enormous calculation time and it is difficult to use it in interactive operations. In order to solve these problems, we calculate the center line (bone axis) of femur and tibia (shin bone) automatically, and we use them as initial positions for the registration. We evaluate our registration method by using three patient's image data, and we compare our proposed method and a conventional registration, which uses down-hill simplex algorithm. The down-hill simplex method is an optimization algorithm that requires only function evaluations, and doesn't need the calculation of derivatives. Our registration method is more effective than the downhill simplex method in computational time and the stable convergence. We have developed the implant simulation system on a personal computer, in order to support the surgeon in a preoperative planning of TKA. Our registration method is implemented in the simulation system, and user can manipulate 2D/3D translucent templates of implant components on X-ray film and 3D CT images.

  13. Relaxation of flux ropes and magnetic reconnection in the Reconnection Scaling Experiment at LANL

    NASA Astrophysics Data System (ADS)

    Furno, Ivo

    2004-11-01

    Magnetic reconnection and plasma relaxation are studied in the Reconnection Scaling Experiment (RSX) with current carrying plasma columns (magnetic flux ropes). Using plasma guns, multiple flux ropes (B_pol < 100 Gauss, L=90 cm, r < 3 cm) are generated in a three-dimensional (3D) cylindrical geometry and are observed to evolve dynamically during the injection of magnetic helicity. Detailed evolution of electron density, temperature, plasma potential and magnetic field structures is reconstructed experimentally and visible light emission is captured with a fast-gated, intensified CCD camera to provide insight into the global flux rope dynamics. Experiments with two flux ropes in collisional plasmas and in a strong axial guide field (Bz / B_pol > 10) suggest that magnetic reconnection plays an important role in the initial stages of flux rope evolution. During the early stages of the applied current drive (t < 20τ_Alfven), the flux ropes are observed to twist, partially coalesce and form a thin current sheet with a scale size comparable to that of the ion sound gyro-radius. Here, non-ideal terms in a generalized Ohm's Law appear to play a significant role in the 3D reconnection process as shown by the presence of a strong axial pressure gradient in the current sheet. In addition, a density perturbation with a structure characteristic of a kinetic Alfvén wave is observed to propagate axially in the current layer, anti-parallel to the induced sheet current. Later in the evolution, when a sufficient amount of helicity is injected into the system, a critical threshold for the kink instability is exceeded and the helical twisting of each individual flux rope can dominate the dynamics of the system. This may prevent the complete coalescence of the flux ropes.

  14. Relaxation of flux ropes and magnetic reconnection in the Reconnection Scaling Experiment at LANL

    NASA Astrophysics Data System (ADS)

    Furno, I.; Intrator, T.; Hemsing, E.; Hsu, S.; Lapenta, G.; Abbate, S.

    2004-12-01

    Magnetic reconnection and plasma relaxation are studied in the Reconnection Scaling Experiment (RSX) with current carrying plasma columns (magnetic flux ropes). Using plasma guns, multiple flux ropes (Bθ ≤ 100 Gauss, L=90 cm, r≤3 cm) are generated in a three-dimensional (3D) cylindrical geometry and are observed to evolve dynamically during the injection of magnetic helicity. Detailed evolution of electron density, temperature, plasma potential and magnetic field structures is reconstructed experimentally and visible light emission is captured with a fast-gated, intensified CCD camera to provide insight into the global flux rope dynamics. Experiments with two flux ropes in collisional plasmas and in a strong axial guide field (Bz / Bθ > 10) suggest that magnetic reconnection plays an important role in the initial stages of flux rope evolution. During the early stages of the applied current drive (t≤ 20 τ Alfv´ {e}n), the flux ropes are observed to twist, partially coalesce and form a thin current sheet with a scale size comparable to that of the ion sound gyro-radius. Here, non-ideal terms in a generalized Ohm's Law appear to play a significant role in the 3D reconnection process as shown by the presence of a strong axial pressure gradient in the current sheet. In addition, a density perturbation with a structure characteristic of a kinetic Alfvén wave is observed to propagate axially in the current layer, anti-parallel to the induced sheet current. Later in the evolution, when a sufficient amount of helicity is injected into the system, a critical threshold for the kink instability is exceeded and the helical twisting of each individual flux rope can dominate the dynamics of the system. This may prevent the complete coalescence of the flux ropes.

  15. Label-free fast 3D coherent imaging reveals pancreatic islet micro-vascularization and dynamic blood flow

    PubMed Central

    Berclaz, Corinne; Szlag, Daniel; Nguyen, David; Extermann, Jérôme; Bouwens, Arno; Marchand, Paul J.; Nilsson, Julia; Schmidt-Christensen, Anja; Holmberg, Dan; Grapin-Botton, Anne; Lasser, Theo

    2016-01-01

    In diabetes, pancreatic β-cells play a key role. These cells are clustered within structures called islets of Langerhans inside the pancreas and produce insulin, which is directly secreted into the blood stream. The dense vascularization of islets of Langerhans is critical for maintaining a proper regulation of blood glucose homeostasis and is known to be affected from the early stage of diabetes. The deep localization of these islets inside the pancreas in the abdominal cavity renders their in vivo visualization a challenging task. A fast label-free imaging method with high spatial resolution is required to study the vascular network of islets of Langerhans. Based on these requirements, we developed a label-free and three-dimensional imaging method for observing islets of Langerhans using extended-focus Fourier domain Optical Coherence Microscopy (xfOCM). In addition to structural imaging, this system provides three-dimensional vascular network imaging and dynamic blood flow information within islets of Langerhans. We propose our method to deepen the understanding of the interconnection between diabetes and the evolution of the islet vascular network. PMID:27895996

  16. Single-shot-capable fast multichannel Fourier transform interferometer based on a microfabricated 3D multimirror array

    NASA Astrophysics Data System (ADS)

    Moser, H. O.; Heussler, S. P.; Kalaiselvi, S. M. P.

    2012-06-01

    We present a Fourier transform interferometer that is capable to record single short pulses and fast continuous transient spectra. This is achieved by spatially parallel instead of time serial processing by means of a micro/nanomanufactured multimirror array and a pixellated detector camera. The multimirror array is produced in excellent optical quality from poly(methyl methacrylate) by means of deep X-ray gray level lithography including multiple moving masks followed by sputter deposition of the gold reflecting surfaces. The crucial components such as the multimirror array and the pixellated camera are part of a straightforward optical system similar to a Czerny-Turner mount. Results demonstrate single shot measurements down to 320 μs, only limited by the camera shutter and the infrared source, and the time evolution of the absorption spectrum of an evaporating acetone layer that shows spectral changes during the first few seconds. While the spectral range of the multichannel Fourier transform interferometer (MC FTIR) as reported extends from near to mid infrared, multimirror arrays can be produced for spectra from visible to far infrared. Thus, the potential performance depends mostly on availability of detectors. The minimum pulse duration is determined by that photon number in the pulse which yields a sufficient signal to noise ratio, whereas the maximum acquisition rate of continuous transients is given by the frame rate of the detector.

  17. Fast and robust extraction of centerlines in 3D tubular structures using a scattered-snakelet approach

    NASA Astrophysics Data System (ADS)

    Spuhler, Christoph; Harders, Matthias; Székely, Gábor

    2006-03-01

    We present a fast and robust approach for automatic centerline extraction of tubular structures. The underlying idea is to cut traditional snakes into a set of shorter, independent segments - so-called snakelets. Following the same variational principles, each snakelet acts locally and extracts a subpart of the overall structure. After a parallel optimization step, outliers are detected and the remaining segments then form an implicit centerline. No manual initialization of the snakelets is necessary, which represents one advantage of the method. Moreover, computational complexity does not directly depend on dataset size, but on the number of snake segments necessary to cover the structure of interest, resulting in short computation times. Lastly, the approach is robust even for very complex datasets such as the small intestine. Our approach was tested on several medical datasets (CT datasets of colon, small bowel, and blood vessels) and yielded smooth, connected centerlines with few or no branches. The computation time needed is less than a minute using standard computing hardware.

  18. Magnetic reconnection in the presence of externally driven and self-generated turbulence

    SciTech Connect

    Karimabadi, H.; Lazarian, A.

    2013-11-15

    Magnetic reconnection is an important process that violates flux freezing and induces change of magnetic field topology in conducting fluids and, as a consequence, converts magnetic field energy into particle energy. It is thought to be operative in laboratory, heliophysical, and astrophysical plasmas. These environments exhibit wide variations in collisionality, ranging from collisionless in the Earth's magnetosphere to highly collisional in molecular clouds. A common feature among these plasmas is, however, the presence of turbulence. We review the present understanding of the effects of turbulence on the reconnection rate, discussing both how strong pre-existing turbulence modifies Sweet-Parker reconnection and how turbulence may develop as a result of reconnection itself. In steady state, reconnection rate is proportional to the aspect ratio of the diffusion region. Thus, two general MHD classes of models for fast reconnection have been proposed, differing on whether they keep the aspect ratio finite by increasing the width due to turbulent broadening or shortening the length of the diffusion layer due to plasmoid instability. One of the consequences of the plasmoid instability model is the possibility that the current sheet thins down to collisionless scales where kinetic effects become dominant. As a result, kinetic effects may be of importance for many astrophysical applications which were considered to be in the realm of MHD. Whether pre-existing turbulence can significantly modify the transition to the kinetic regime is not currently known. Although most studies of turbulent reconnection have been based on MHD, recent advances in kinetic simulations are enabling 3D studies of turbulence and reconnection in the collisionless regime. A summary of these recent works, highlighting similarities and differences with the MHD models of turbulent reconnection, as well as comparison with in situ observations in the magnetosphere and in the solar wind, are presented

  19. Boundary element solutions for broad-band 3-D geo-electromagnetic problems accelerated by an adaptive multilevel fast multipole method

    NASA Astrophysics Data System (ADS)

    Ren, Zhengyong; Kalscheuer, Thomas; Greenhalgh, Stewart; Maurer, Hansruedi

    2013-02-01

    We have developed a generalized and stable surface integral formula for 3-D uniform inducing field and plane wave electromagnetic induction problems, which works reliably over a wide frequency range. Vector surface electric currents and magnetic currents, scalar surface electric charges and magnetic charges are treated as the variables. This surface integral formula is successfully applied to compute the electromagnetic responses of 3-D topography to low frequency magnetotelluric and high frequency radio-magnetotelluric fields. The standard boundary element method which is used to solve this surface integral formula quickly exceeds the memory capacity of modern computers for problems involving hundreds of thousands of unknowns. To make the surface integral formulation applicable and capable of dealing with large-scale 3-D geo-electromagnetic problems, we have developed a matrix-free adaptive multilevel fast multipole boundary element solver. By means of the fast multipole approach, the time-complexity of solving the final system of linear equations is reduced to O(m log m) and the memory cost is reduced to O(m), where m is the number of unknowns. The analytical solutions for a half-space model were used to verify our numerical solutions over the frequency range 0.001-300 kHz. In addition, our numerical solution shows excellent agreement with a published numerical solution for an edge-based finite-element method on a trapezoidal hill model at a frequency of 2 Hz. Then, a high frequency simulation for a similar trapezoidal hill model was used to study the effects of displacement currents in the radio-magnetotelluric frequency range. Finally, the newly developed algorithm was applied to study the effect of moderate topography and to evaluate the applicability of a 2-D RMT inversion code that assumes a flat air-Earth interface, on RMT field data collected at Smørgrav, southern Norway. This paper constitutes the first part of a hybrid boundary element-finite element

  20. Magnetic Reconnection

    NASA Video Gallery

    This science visualization shows a magnetospheric substorm, during which, magnetic reconnection causes energy to be rapidly released along the field lines in the magnetotail, that part of the magne...

  1. Magnetohydrodynamic Numerical Simulations of Magnetic Reconnection in Interstellar Medium

    NASA Astrophysics Data System (ADS)

    Tanuma, Syuniti

    2000-03-01

    In this thesis, we perform two-dimensional (2D) resistive magnetohydrodynamic (MHD) numerical simulations of the magnetic reconnection in interstellar medium. Part I is introduction. The motivation of the study is to investigate the origin of hot gas in interstellar medium. A scenario for generating X-ray gas in Galaxy is proposed, and examined by performing 2D MHD simulations with simple assumptions (Part II). The magnetic reconnection triggered by a supernova (Part III) and Parker instability (Part IV) are studied in detail, by performing 2D MHD simulations. Furthermore, the magnetic reconnection is also studied by performing three-dimensional (3D) MHD numerical simulation in (Part V). % Finally, we discuss and summarize the thesis (Parts VI and VII). Part I First, we review observation of Galactic Ridge X-ray Emission (GRXE) and its problems. Second, we describe observation of interstellar magnetic field briefly. Third, we review magnetic reconnection, theoretical models, numerical simulations, observations and experiments, and tearing instability. Forth, Parker instability (undular mode of magnetobuoyancy instability) is mentioned. Finally, we show the purpose of this thesis. Part II We present a scenario for the origin of the hot plasma in Galaxy as a model of strong X-ray emission [sim 3-10 keV; LX(2-10 keV) sim 1038 erg s-1], called GRXE, which has been observed near to the galactic plane. GRXE is thermal emission from a hot component (sim 7 keV) and a cool component (sim 0.8 keV). Observations suggest that the hot component is diffuse, and that it is not escaping away freely. Both what heats the hot component and what confines it in Galactic ridge still remain puzzling, while the cool component is believed to be created by supernovae. We propose a new scenario: the hot component is heated by magnetic reconnection, and confined by a helical magnetic field produced by magnetic reconnection. We solved 2D MHD equations numerically to study how magnetic

  2. Validation of 3D Code KATRIN For Fast Neutron Fluence Calculation of VVER-1000 Reactor Pressure Vessel by Ex-Vessel Measurements and Surveillance Specimens Results

    NASA Astrophysics Data System (ADS)

    Dzhalandinov, A.; Tsofin, V.; Kochkin, V.; Panferov, P.; Timofeev, A.; Reshetnikov, A.; Makhotin, D.; Erak, D.; Voloschenko, A.

    2016-02-01

    Usually the synthesis of two-dimensional and one-dimensional discrete ordinate calculations is used to evaluate neutron fluence on VVER-1000 reactor pressure vessel (RPV) for prognosis of radiation embrittlement. But there are some cases when this approach is not applicable. For example the latest projects of VVER-1000 have upgraded surveillance program. Containers with surveillance specimens are located on the inner surface of RPV with fast neutron flux maximum. Therefore, the synthesis approach is not suitable enough for calculation of local disturbance of neutron field in RPV inner surface behind the surveillance specimens because of their complicated and heterogeneous structure. In some cases the VVER-1000 core loading consists of fuel assemblies with different fuel height and the applicability of synthesis approach is also ambiguous for these fuel cycles. Also, the synthesis approach is not enough correct for the neutron fluence estimation at the RPV area above core top. Because of these reasons only the 3D neutron transport codes seem to be satisfactory for calculation of neutron fluence on the VVER-1000 RPV. The direct 3D calculations are also recommended by modern regulations.

  3. pySeismicFMM: Python based travel time calculation in regular 2D and 3D grids in Cartesian and geographic coordinates using Fast Marching Method

    NASA Astrophysics Data System (ADS)

    Polkowski, Marcin

    2016-04-01

    Seismic wave travel time calculation is the most common numerical operation in seismology. The most efficient is travel time calculation in 1D velocity model - for given source, receiver depths and angular distance time is calculated within fraction of a second. Unfortunately, in most cases 1D is not enough to encounter differentiating local and regional structures. Whenever possible travel time through 3D velocity model has to be calculated. It can be achieved using ray calculation or time propagation in space. While single ray path calculation is quick it is complicated to find the ray path that connects source with the receiver. Time propagation in space using Fast Marching Method seems more efficient in most cases, especially when there are multiple receivers. In this presentation a Python module pySeismicFMM is presented - simple and very efficient tool for calculating travel time from sources to receivers. Calculation requires regular 2D or 3D velocity grid either in Cartesian or geographic coordinates. On desktop class computer calculation speed is 200k grid cells per second. Calculation has to be performed once for every source location and provides travel time to all receivers. pySeismicFMM is free and open source. Development of this tool is a part of authors PhD thesis. National Science Centre Poland provided financial support for this work via NCN grant DEC-2011/02/A/ST10/00284.

  4. Improved Magnetic Reconnection Experiment at FRC Device

    NASA Astrophysics Data System (ADS)

    Xu, Ming; Zhou, Ruijie; Vasquez, Daniel; Huang, Tian-Sen; Prairie View Solar Observatory Team

    2014-10-01

    With experimental facility's improvement, magnetic reconnection has been further studied at Prairie View rotamak device. By adding one toroidal current in the central part of the rotamak device, the cutting of one magnetic field reverse configuration (FRC) as two FRCs in the experiment process becomes more obvious. Differing from the magnetic reconnection experiments conducted at other labs, where magnetic reconnection is formed with two ware-coiled currents buried in a chamber with large scale magnetic field, in our magnetic reconnection experiment the main source of the magnetic field is plasma current. Thus, the magnetic reconnection experiments conducted at rotamak device are closer to the one occurring in the space and on the sun. At the present stage, our experiments focus on the study of the change in electron temperature during the magnetic reconnection process. Furthermore, the ion temperature and plasma flow can be easily achieved from fast ion Doppler spectroscopy (IDS) diagnostic system, which makes the magnetic reconnection process more clearly.

  5. The Neighboring Column Approximation (NCA) - A fast approach for the calculation of 3D thermal heating rates in cloud resolving models

    NASA Astrophysics Data System (ADS)

    Klinger, Carolin; Mayer, Bernhard

    2016-01-01

    Due to computational costs, radiation is usually neglected or solved in plane parallel 1D approximation in today's numerical weather forecast and cloud resolving models. We present a fast and accurate method to calculate 3D heating and cooling rates in the thermal spectral range that can be used in cloud resolving models. The parameterization considers net fluxes across horizontal box boundaries in addition to the top and bottom boundaries. Since the largest heating and cooling rates occur inside the cloud, close to the cloud edge, the method needs in first approximation only the information if a grid box is at the edge of a cloud or not. Therefore, in order to calculate the heating or cooling rates of a specific grid box, only the directly neighboring columns are used. Our so-called Neighboring Column Approximation (NCA) is an analytical consideration of cloud side effects which can be considered a convolution of a 1D radiative transfer result with a kernel or radius of 1 grid-box (5 pt stencil) and which does usually not break the parallelization of a cloud resolving model. The NCA can be easily applied to any cloud resolving model that includes a 1D radiation scheme. Due to the neglect of horizontal transport of radiation further away than one model column, the NCA works best for model resolutions of about 100 m or lager. In this paper we describe the method and show a set of applications of LES cloud field snap shots. Correction terms, gains and restrictions of the NCA are described. Comprehensive comparisons to the 3D Monte Carlo Model MYSTIC and a 1D solution are shown. In realistic cloud fields, the full 3D simulation with MYSTIC shows cooling rates up to -150 K/d (100 m resolution) while the 1D solution shows maximum coolings of only -100 K/d. The NCA is capable of reproducing the larger 3D cooling rates. The spatial distribution of the heating and cooling is improved considerably. Computational costs are only a factor of 1.5-2 higher compared to a 1D

  6. Quantitative analytical model for magnetic reconnection in hall magnetohydrodynamics

    SciTech Connect

    Simakov, Andrei N

    2008-01-01

    Magnetic reconnection is of fundamental importance for laboratory and naturally occurring plasmas. Reconnection usually develops on time scales which are much shorter than those associated with classical collisional dissipation processes, and which are not fully understood. While such dissipation-independent (or 'fast') reconnection rates have been observed in particle and Hall magnetohydrodynamics (MHD) simulations and predicted analytically in electron MHD, a quantitative analytical theory of fast reconnection valid for arbitrary ion inertial lengths d{sub i} has been lacking. Here we propose such a theory without a guide field. The theory describes two-dimensional magnetic field diffusion regions, provides expressions for the reconnection rates, and derives a formal criterion for fast reconnection in terms of dissipation parameters and di. It also demonstrates that both open X-point and elongated diffusion regions allow dissipation-independent reconnection and reveals a possibility of strong dependence of the reconnection rates on d{sub i}.

  7. Reconnection layer dynamics in the Reconnection Scaling Experiment at LANL

    NASA Astrophysics Data System (ADS)

    Furno, Ivo; Intrator, Thomas; Hemsing, Erik; Hsu, Scott; Lapenta, Giovanni; Ricci, Paolo

    2003-10-01

    Using the Reconnection Scaling Experiment (RSX) at Los Alamos National Laboratory, we are studying quasi-2D magnetic reconnection in a 3D linear geometry. RSX is a linear plasma device that relies on plasma gun technology to generate high density (>10^14 cm-3), high current (J 200A/cm^2) ohmically heated (Te 15eV) hydrogen plasma channels ( 2 cm radius). In RSX, magnetic reconnection is induced during the current ramp-up between two axially directed parallel current channels generating a reconnection magnetic field, B_rec, up to 40 Gauss. A set of 12 magnet coils induces an axial guide magnetic field Bz of up to 0.1 T allowing the reconnection field B_rec to be independently scaled from the guiding field B_z. Plasma collisionality can also be independently scaled by varying the plasma gun fill pressure. The formation and dynamics of the current sheet is studied using time and space resolved magnetic field measurements. To date, preliminary experiments in the collisional regime and in the presence of a strong guide magnetic field (B_z/B_rec>10) show the formation of a Sweet-Parker like Y-shaped current sheet. The axial electric field, as inferred from the measured magnetic flux annihilation rate, is also consistent with Sweet-Parker magnetic reconnection. In future experiments, more collisionless regimes will be explored, and the influence of the guide magnetic field on the dynamics of the current sheet and the reconnection rate will be investigated in truly 3D geometry.

  8. Intuitive approach to magnetic reconnection

    SciTech Connect

    Kulsrud, Russell M.

    2011-11-15

    Two reconnection problems are considered. The first problem concerns global physics. The plasma in the global reconnection region is in magnetostatic equilibrium. It is shown that this equilibrium can be uniquely characterized by a set of constraints. During reconnection and independently of the local reconnection physics, these constraints can be uniquely evolved from any initial state. The second problem concerns Petschek reconnection. Petschek's model for fast reconnection, which is governed by resistive MHD equations with constant resistivity is not validated by numerical simulations. Malyshkin et al.[Phys. Plasmas 12, 102920 (2005)], showed that the reason for the discrepancy is that Petschek did not employ Ohm's law throughout the local diffusion region, but only at the X-point. A derivation of Petschek reconnection, including Ohm's law throughout the entire diffusion region, removes the discrepancy. This derivation is based largely on Petschek's original 1964 calculation [in AAS-NASA Symposium on Solar Flares (National Aeronautics and Space Administration, Washington, D.C., 1964), NASA SP50, p. 425]. A useful physical interpretation of the role which Ohm's law plays in the diffusion region is presented.

  9. Does the Rate of Collisionless Magnetic Reconnection Depend on the Dissipation Mechanism?

    NASA Technical Reports Server (NTRS)

    Aunai, Nicolas; Hesse, Michael; Black, Carrie; Evans, Rebekah; Kuznetsova, Maria

    2012-01-01

    The importance of the electron dissipation effect on the reconnection rate is investigated in the general case of asymmetric collisionless magnetic reconnection. Contrary to the standard collisionless reconnection model, it is found that the reconnection rate, and the macroscopic evolution of the reconnecting system, crucially depend on the nature of the dissipation mechanism and that the Hall effect alone is not able to sustain fast reconnection.

  10. Does the Rate of Collisionless Reconnection Depend on the Dissipation Mechanism?

    NASA Technical Reports Server (NTRS)

    Aunai, Nicolas; Hesse, Michael; Black, Carrie; Evans, Rebekah; Kuznetsova, maria

    2012-01-01

    The importance of the electron dissipation effect on the reconnection rate is investigated in the general case of asymmetric collisionless magnetic reconnection. Contrary to the standard collisionless reconnection model, it is found that the reconnection rate, and them acroscopic evolution of the reconnecting system, crucially depend on the nature of the dissipation mechanism and that the Hall effect alone is not able to sustain fast reconnection.

  11. Exploring Magnetopause Reconnection with MMS

    NASA Astrophysics Data System (ADS)

    Burch, J. L.; Torbert, R. B.; Moore, T. E.; Pollock, C. J.; Mauk, B.; Fuselier, S. A.; Nakamura, R.; Hesse, M.; Ergun, R.; Giles, B. L.; Phan, T.; Baker, D. N.

    2015-12-01

    Magnetospheric Multiscale is a NASA Solar-Terrestrial Probes mission that is designed to conduct a definitive experiment on magnetic reconnection in the boundary regions of the Earth's magnetoshere. Previous missions have established that reconnection occurs somewhere on the magnetopause and in the geomagnetic tail on a nearly continuous basis. Most of the predictions that have been made about reconnection on the MHD and ion scales have been confirmed and new questions posed, particularly at smaller scales. MMS is designed to probe reconnection down to the smallest scales possible thereby allowing the assessment of electron-scale pressure gradients and inertial effects as possible important drivers of magnetic reconnection. Multipoint measurements of 3D electric and magnetic fields and plasma distributions at the required spatial resolution are required along with plasma waves, energetic particles and ion composition to open this new window on reconnection and solve its remaining mysteries. With a wide range of new and vastly improved measurements at 4 locations with separations down to 10 km, MMS is fully operational and nearing the dayside magnetopause where its exploration begins. In this paper results obtained from the first three months of magnetopause crossings will be presented.

  12. Reconnection on the Sun

    NASA Astrophysics Data System (ADS)

    Kohler, Susanna

    2016-05-01

    Because the Sun is so close, it makes an excellent laboratory to study processes we cant examinein distant stars. One openquestion is that of how solar magnetic fields rearrange themselves, producing the tremendous releases of energy we observe as solar flares and coronal mass ejections (CMEs).What is Magnetic Reconnection?Magnetic reconnection occurs when a magnetic field rearranges itself to move to a lower-energy state. As field lines of opposite polarity reconnect, magnetic energy is suddenly converted into thermal and kinetic energy.This processis believed to be behind the sudden releases of energy from the solar surface in the form of solar flares and CMEs. But there are many different models for how magnetic reconnection could occur in the magnetic field at the Suns surface, and we arent sure which one of these reconnection types is responsible for the events we see.Recently, however, several studies have been published presenting some of the first observational support of specific reconnection models. Taken together, these observations suggest that there are likely several different types of reconnection happening on the solar surface. Heres a closer look at two of these recent publications:A pre-eruption SDO image of a flaring region (b) looks remarkably similar to a 3D cartoon for typical breakout configuration (a). Click for a closer look! [Adapted from Chen et al. 2016]Study 1:Magnetic BreakoutLed by Yao Chen (Shandong University in China), a team of scientists has presented observations made by the Solar Dynamics Observatory (SDO) of a flare and CME event that appears to have been caused by magnetic breakout.In the magnetic breakout model, a series of loops in the Suns lower corona are confined by a surrounding larger loop structure called an arcade higher in the corona. As the lower loops push upward, reconnection occurs in the upper corona, removing the overlying, confining arcade. Without that extra confinement, the lower coronal loops expand upward

  13. LLNL-Earth3D

    SciTech Connect

    2013-10-01

    Earth3D is a computer code designed to allow fast calculation of seismic rays and travel times through a 3D model of the Earth. LLNL is using this for earthquake location and global tomography efforts and such codes are of great interest to the Earth Science community.

  14. Fast, purely growing collisionless reconnection as an eigenfunction problem related to but not involving linear whistler waves

    SciTech Connect

    Bellan, Paul M.

    2014-10-15

    If either finite electron inertia or finite resistivity is included in 2D magnetic reconnection, the two-fluid equations become a pair of second-order differential equations coupling the out-of-plane magnetic field and vector potential to each other to form a fourth-order system. The coupling at an X-point is such that out-of-plane even-parity electric and odd-parity magnetic fields feed off each other to produce instability if the scale length on which the equilibrium magnetic field changes is less than the ion skin depth. The instability growth rate is given by an eigenvalue of the fourth-order system determined by boundary and symmetry conditions. The instability is a purely growing mode, not a wave, and has growth rate of the order of the whistler frequency. The spatial profile of both the out-of-plane electric and magnetic eigenfunctions consists of an inner concave region having extent of the order of the electron skin depth, an intermediate convex region having extent of the order of the equilibrium magnetic field scale length, and a concave outer exponentially decaying region. If finite electron inertia and resistivity are not included, the inner concave region does not exist and the coupled pair of equations reduces to a second-order differential equation having non-physical solutions at an X-point.

  15. First Reconnected Flux Tubes

    NASA Astrophysics Data System (ADS)

    Andersson, L.; Lapenta, G.; Newman, D. L.; Markidis, S.; Spanswick, E. L.; Baker, J. B.; Clausen, L. B.; Larson, D. E.; Ergun, R. E.; Frey, H. U.; Singer, H. J.; Angelopoulos, V.; Bonnell, J. W.; McFadden, J. P.; Glassmeier, K.; Wolfgang, B.

    2011-12-01

    THEMIS observations from the magnetic equator (the equatorial plane) in the near-earth tail reveal a great amount of information regarding the plasma environment in the vicinity of the first reconnected flux tubes (a subgroup of dipolarization fronts). Two sequential observations of dipolarization fronts are analyzed in detail using three of the THEMIS spacecraft. Particle acceleration to high energies (>50 keV) is observed together with a void region interpreted as a region to which the full electron distribution has incomplete access. Whistler waves, which are observed, could be driven by one of the two electron populations located in the wake of the first reconnected flux tubes. The detailed observations are compared with 2D and 3D implicit kinetic simulation of reconnection events. This presentation focuses on the similarity between observation and simulation. One key aspect of this presentation is a demonstration of how different the signature is when observing at vs off the magnetic equator, since most observations in the literature (unlike the observations presented here) are from off the equator. For this event, additional spacecraft and ground observations have been analyzed, which demonstrate that a reconfiguration of the magnetosphere is taking place. However, the focus of this presentation is on the small scale (<~10 di), rather than the large scale (~20 Re).

  16. Analysis of local molecular motions of aromatic sidechains in proteins by 2D and 3D fast MAS NMR spectroscopy and quantum mechanical calculations.

    PubMed

    Paluch, Piotr; Pawlak, Tomasz; Jeziorna, Agata; Trébosc, Julien; Hou, Guangjin; Vega, Alexander J; Amoureux, Jean-Paul; Dracinsky, Martin; Polenova, Tatyana; Potrzebowski, Marek J

    2015-11-21

    We report a new multidimensional magic angle spinning NMR methodology, which provides an accurate and detailed probe of molecular motions occurring on timescales of nano- to microseconds, in sidechains of proteins. The approach is based on a 3D CPVC-RFDR correlation experiment recorded under fast MAS conditions (ν(R) = 62 kHz), where (13)C-(1)H CPVC dipolar lineshapes are recorded in a chemical shift resolved manner. The power of the technique is demonstrated in model tripeptide Tyr-(d)Ala-Phe and two nanocrystalline proteins, GB1 and LC8. We demonstrate that, through numerical simulations of dipolar lineshapes of aromatic sidechains, their detailed dynamic profile, i.e., the motional modes, is obtained. In GB1 and LC8 the results unequivocally indicate that a number of aromatic residues are dynamic, and using quantum mechanical calculations, we correlate the molecular motions of aromatic groups to their local environment in the crystal lattice. The approach presented here is general and can be readily extended to other biological systems.

  17. Robust extrapolation scheme for fast estimation of 3D ising field partition functions: application to within-subject fMRI data analysis.

    PubMed

    Risser, Laurent; Vincent, Thomas; Ciuciu, Philippe; Idier, Jérôme

    2009-01-01

    In this paper, we present a fast numerical scheme to estimate Partition Functions (PF) of 3D Ising fields. Our strategy is applied to the context of the joint detection-estimation of brain activity from functional Magnetic Resonance Imaging (fMRI) data, where the goal is to automatically recover activated regions and estimate region-dependent hemodynamic filters. For any region, a specific binary Markov random field may embody spatial correlation over the hidden states of the voxels by modeling whether they are activated or not. To make this spatial regularization fully adaptive, our approach is first based upon a classical path-sampling method to approximate a small subset of reference PFs corresponding to prespecified regions. Then, the proposed extrapolation method allows us to approximate the PFs associated with the Ising fields defined over the remaining brain regions. In comparison with preexisting approaches, our method is robust to topological inhomogeneities in the definition of the reference regions. As a result, it strongly alleviates the computational burden and makes spatially adaptive regularization of whole brain fMRI datasets feasible.

  18. Slip Running Reconnection in Magnetic Flux Ropes

    NASA Astrophysics Data System (ADS)

    Gekelman, W. N.; Van Compernolle, B.; Vincena, S. T.; De Hass, T.

    2012-12-01

    Magnetic flux ropes are due to helical currents and form a dense carpet of arches on the surface of the sun. Occasionally one tears loose as a coronal mass ejection and its rope structure can be detected by satellites close to the earth. Current sheets can tear into filaments and these are nothing other than flux ropes. Ropes are not static, they exert mutual ěc{J}×ěc{B} forces causing them to twist about each other and eventually merge. Kink instabilities cause them to violently smash into each other and reconnect at the point of contact. We report on experiments on two adjacent ropes done in the large plasma device (LAPD) at UCLA ( ne ˜ 1012, Te ˜ 6 eV, B0z=330G, Brope}\\cong{10G,trep=1 Hz). The currents and magnetic fields form exotic shapes with no ignorable direction and no magnetic nulls. Volumetric space-time data (70,600 spatial locations) show multiple reconnection sites with time-dependent locations. The concept of a quasi-separatrix layer (QSL), a tool to understand and visualize 3D magnetic field lines reconnection without null points is introduced. Three-dimensional measurements of the QSL derived from magnetic field data are presented. Within the QSL field lines that start close to one another rapidly diverge as they pass through one or more reconnection regions. The motion of magnetic field lines are traced as reconnection proceeds and they are observed to slip through the regions of space where the QSL is largest. As the interaction proceeds we double the current in the ropes. This accompanied by intense heating as observed in uv light and plasma flows measured by Mach probes. The interaction of the ropes is clearly seen by vislaulizng magnetic field data , as well as in images from a fast framing camera. Work supported by the Dept. of Energy and The National Science Foundation, done at the Basic Plasma Science Facility at UCLA.Magnetic Field lines (measured) of three flux ropes and the plasma currents associated with them

  19. Fast and Broadband Signal Integrity Analysis of Multiple Vias in Heterogeneous 3D IC and Die-Level Packaging by Using Generalized Foldy-Lax Scattering Method

    NASA Astrophysics Data System (ADS)

    Chang, Xin

    This dissertation proposal is concerned with the use of fast and broadband full-wave electromagnetic methods for modeling high speed interconnects (e.g, vertical vias and horizontal traces) and passive components (e.g, decoupling capacitors) for structures of PCB and packages, in 3D IC, Die-level packaging and SIW based devices, to effectively modeling the designs signal integrity (SI) and power integrity (PI) aspects. The main contributions finished in this thesis is to create a novel methodology, which hybridizes the Foldy-Lax multiple scattering equations based fast full wave method, method of moment (MoM) based 1D technology, modes decoupling based geometry decomposition and cavity modes expansions, to model and simulate the electromagnetic scattering effects for the irregular power/ground planes, multiple vias and traces, for fast and accurate analysis of link level simulation on multilayer electronic structures. For the modeling details, the interior massively-coupled multiple vias problem is modeled most-analytically by using the Foldy-Lax multiple scattering equations. The dyadic Green's functions of the magnetic field are expressed in terms of waveguide modes in the vertical direction and vector cylindrical wave expansions or cavity modes expansions in the horizontal direction, combined with 2D MoM realized by 1D technology. For the incident field of the case of vias in the arbitrarily shaped antipad in finite large cavity/waveguide, the exciting and scattering field coefficients are calculated based on the transformation which converts surface integration of magnetic surface currents in antipad into 1D line integration of surface charges on the vias and on the ground plane. Geometry decomposition method is applied to model and integrate both the vertical and horizontal interconnects/traces in arbitrarily shaped power/ground planes. Moreover, a new form of multiple scattering equations is derived for solving coupling effects among mixed metallic

  20. Indeterminacy and instability in Petschek reconnection

    SciTech Connect

    Forbes, Terry G.; Priest, Eric R.; Seaton, Daniel B.; Litvinenko, Yuri E.

    2013-05-15

    We explain two puzzling aspects of Petschek's model for fast reconnection. One is its failure to occur in plasma simulations with uniform resistivity. The other is its inability to provide anything more than an upper limit for the reconnection rate. We have found that previously published analytical solutions based on Petschek's model are structurally unstable if the electrical resistivity is uniform. The structural instability is associated with the presence of an essential singularity at the X-line that is unphysical. By requiring that such a singularity does not exist, we obtain a formula that predicts a specific rate of reconnection. For uniform resistivity, reconnection can only occur at the slow, Sweet-Parker rate. For nonuniform resistivity, reconnection can occur at a much faster rate provided that the resistivity profile is not too flat near the X-line. If this condition is satisfied, then the scale length of the nonuniformity determines the reconnection rate.

  1. Magnetic reconnection from a multiscale instability cascade

    NASA Astrophysics Data System (ADS)

    Moser, Auna L.; Bellan, Paul M.

    2012-02-01

    Magnetic reconnection, the process whereby magnetic field lines break and then reconnect to form a different topology, underlies critical dynamics of magnetically confined plasmas in both nature and the laboratory. Magnetic reconnection involves localized diffusion of the magnetic field across plasma, yet observed reconnection rates are typically much higher than can be accounted for using classical electrical resistivity. It is generally proposed that the field diffusion underlying fast reconnection results instead from some combination of non-magnetohydrodynamic processes that become important on the `microscopic' scale of the ion Larmor radius or the ion skin depth. A recent laboratory experiment demonstrated a transition from slow to fast magnetic reconnection when a current channel narrowed to a microscopic scale, but did not address how a macroscopic magnetohydrodynamic system accesses the microscale. Recent theoretical models and numerical simulations suggest that a macroscopic, two-dimensional magnetohydrodynamic current sheet might do this through a sequence of repetitive tearing and thinning into two-dimensional magnetized plasma structures having successively finer scales. Here we report observations demonstrating a cascade of instabilities from a distinct, macroscopic-scale magnetohydrodynamic instability to a distinct, microscopic-scale (ion skin depth) instability associated with fast magnetic reconnection. These observations resolve the full three-dimensional dynamics and give insight into the frequently impulsive nature of reconnection in space and laboratory plasmas.

  2. Influence of Spontaneously Generated Turbulence on Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Daughton, William; Roytershteyn, Vadim; Karimabadi, Homa

    2012-10-01

    The 3D dynamics of reconnection is examined for electron-positron plasmas within Harris sheet geometry with a guide field. This configuration is unstable to tearing modes at resonant surfaces across the layer, corresponding to oblique angles relative to 2D models. Vlasov theory predicts a spectrum of oblique modes which can destroy the flux surfaces and produce interacting flux ropes. These structures coalesce to larger scales leading to the continual formation and break-up of new current sheets and the generation of turbulence. The fluctuation spectrum is highly anisotropic and is characterized by two power-laws with a break at k di˜1, where di is the inertial length. In the large 3D simulations, the dissipation rate is reduced by ˜40% relative to small 2D cases which are steady and laminar. In both limits, the reconnection remains fast (i.e. Alfv'enic), is insensitive to the system size and ultimately occurs within inertial-scale current sheets. These results imply that the physics responsible for setting the time scale is not radically altered by the turbulence. However, the results indicate that a larger fraction of the magnetic energy is accessible in 3D and that many more particles are accelerated into the high energy tails due to the turbulence.

  3. Properties of asymmetric magnetic reconnection

    SciTech Connect

    Birn, J.; Borovsky, J. E.; Hesse, M.

    2008-03-15

    Properties of magnetic reconnection are investigated in two-dimensional, resistive magnetohydrodynamic (MHD) simulations of current sheets separating plasmas with different magnetic field strengths and densities. Specific emphasis is on the influence of the external parameters on the reconnection rate. The effect of the dissipation in the resistive MHD model is separated from this influence by evaluating resistivity dependence together with the dependence on the background parameters. Two scenarios are considered, which may be distinguished as driven and nondriven reconnection. In either scenario, the maximum reconnection rate (electric field) is found to depend on appropriate hybrid expressions based on a magnetic field strength and an Alfven speed derived from the characteristic values in the two inflow regions. The scaling compares favorably with an analytic formula derived recently by Cassak and Shay [Phys. Plasmas 14, 102114 (2007)] applied to the regime of fast reconnection. An investigation of the energy flow and conversion in the vicinity of the reconnection site revealed a significant role of enthalpy flux generation, in addition to the expected conversion of Poynting flux to kinetic energy flux. This enthalpy flux generation results from Ohmic heating as well as adiabatic, that is, compressional heating. The latter is found more important when the magnetic field strengths in the two inflow regions are comparable in magnitude.

  4. Spontaneous reconnection at a separator current layer: 2. Nature of the waves and flows

    NASA Astrophysics Data System (ADS)

    Stevenson, J. E. H.; Parnell, C. E.

    2015-12-01

    Sudden destabilizations of the magnetic field, such as those caused by spontaneous reconnection, will produce waves and/or flows. Here we investigate the nature of the plasma motions resulting from spontaneous reconnection at a 3-D separator. In order to clearly see these perturbations, we start from a magnetohydrostatic equilibrium containing two oppositely signed null points joined by a generic separator along which lies a twisted current layer. The nature of the magnetic reconnection initiated in this equilibrium as a result of an anomalous diffusivity is discussed in detail in Stevenson and Parnell (2015). The resulting sudden loss of force balance inevitably generates waves that propagate away from the diffusion region carrying the dissipated current. In their wake a twisting stagnation flow, in planes perpendicular to the separator, feeds flux back into the original diffusion site (the separator) in order to try to regain equilibrium. This flow drives a phase of slow weak impulsive bursty reconnection that follows on after the initial fast-reconnection phase.

  5. Global Simulations of Magnetotail Reconnection

    NASA Technical Reports Server (NTRS)

    Kuznetsova, M. M.; Hesse, M.; Rastatter, L.; Toth, G.; Gombosi, T.

    2007-01-01

    There is a growing number of observational evidences of dynamic quasi-periodical magnetosphere response to continuously southward interplan etary magnetic field (IMF). However, traditional global MHD simulatio ns with magnetic reconnection supported by numerical dissipation and ad hoc anomalous resistivity driven by steady southward IMF often prod uce only quasi-steady configurations with almost stationary near-eart h neutral line. This discrepancy can be explained by the assumption that global MHD simulations significantly underestimate the reconnectio n rate in the magnetotail during substorm expansion phase. Indeed, co mparative studies of magnetic reconnection in small scale geometries demonstrated that traditional resistive MHD did not produce the fast r econnection rates observed in kinetic simulations. The major approxim ation of the traditional MHD approach is an isotropic fluid assumption) with zero off-diagonal pressure tensor components. The approximatio n, however, becomes invalid in the diffusion region around the reconn ection site where ions become unmagnetized and experience nongyrotropic behaviour. Deviation from gyrotropy in particle distribution functi on caused by kinetic effects manifests itself in nongyrotropic pressu re tensor with nonzero off-diagonal components. We use the global MHD code BATS-R-US and replace ad hoc parameters such as "critical curren t density" and "anomalous resistivity" with a physically motivated di ssipation model. The key element of the approach is to identify diffusion regions where the isotropic fluid MHD approximation is not applic able. We developed an algorithm that searches for locations of magnet otail reconnection sites. The algorithm takes advantage of block-based domain-decomposition technique employed by the BATS-R-US. Boundaries of the diffusion region around each reconnection site are estimated from the gyrotropic orbit threshold condition, where the ion gyroradius is equal to the distance to the

  6. Turbulent Reconnection Rates from Cluster Observations in the Magnetosheath

    NASA Technical Reports Server (NTRS)

    Wendel, Deirdre

    2011-01-01

    The role of turbulence in producing fast reconnection rates is an important unresolved question. Scant in situ analyses exist. We apply multiple spacecraft techniques to a case of nonlinear turbulent reconnection in the magnetosheath to test various theoretical results for turbulent reconnection rates. To date, in situ estimates of the contribution of turbulence to reconnection rates have been calculated from an effective electric field derived through linear wave theory. However, estimates of reconnection rates based on fully nonlinear turbulence theories and simulations exist that are amenable to multiple spacecraft analyses. Here we present the linear and nonlinear theories and apply some of the nonlinear rates to Cluster observations of reconnecting, turbulent current sheets in the magnetosheath. We compare the results to the net reconnection rate found from the inflow speed. Ultimately, we intend to test and compare linear and nonlinear estimates of the turbulent contribution to reconnection rates and to measure the relative contributions of turbulence and the Hall effect.

  7. Turbulent Reconnection Rates from Cluster Observations in the Magneto sheath

    NASA Technical Reports Server (NTRS)

    Wendel, Deirdre

    2011-01-01

    The role of turbulence in producing fast reconnection rates is an important unresolved question. Scant in situ analyses exist. We apply multiple spacecraft techniques to a case of nonlinear turbulent reconnection in the magnetosheath to test various theoretical results for turbulent reconnection rates. To date, in situ estimates of the contribution of turbulence to reconnection rates have been calculated from an effective electric field derived through linear wave theory. However, estimates of reconnection rates based on fully nonlinear turbulence theories and simulations exist that are amenable to multiple spacecraft analyses. Here we present the linear and nonlinear theories and apply some of the nonlinear rates to Cluster observations of reconnecting, turbulent current sheets in the magnetos heath. We compare the results to the net reconnection rate found from the inflow speed. Ultimately, we intend to test and compare linear and nonlinear estimates of the turbulent contribution to reconnection rates and to measure the relative contributions of turbulence and the Hall effect.

  8. Electron nongyrotropy in the context of collisionless magnetic reconnection

    SciTech Connect

    Aunai, Nicolas; Hesse, Michael; Kuznetsova, Maria

    2013-09-15

    Collisionless magnetized plasmas have the tendency to isotropize their velocity distribution function around the local magnetic field direction, i.e., to be gyrotropic, unless some spatial and/or temporal fluctuations develop at the particle gyroscales. Electron gyroscale inhomogeneities are well known to develop during the magnetic reconnection process. Nongyrotropic electron velocity distribution functions have been observed to play a key role in the dissipative process breaking the field line connectivity. In this paper, we present a new method to quantify the deviation of a particle population from gyrotropy. The method accounts for the full 3D shape of the distribution and its analytical formulation allows fast numerical computation. Regions associated with a significant degree of nongyrotropy are shown, as well as the kinetic origin of the nongyrotropy and the fluid signature it is associated with. Using the result of 2.5D Particle-In-Cell simulations of magnetic reconnection in symmetric and asymmetric configurations, it is found that neither the reconnection site nor the topological boundaries are generally associated with a maximized degree of nongyrotropy. Nongyrotropic regions do not correspond to a specific fluid behavior as equivalent nongyrotropy is found to extend over the electron dissipation region as well as in non-dissipative diamagnetic drift layers. The localization of highly nongyrotropic regions in numerical models and their correlation with other observable quantities can, however, improve the characterization of spatial structures explored by spacecraft missions.

  9. Numerical simulations of the ablative Rayleigh-Taylor instability in planar inertial-confinement-fusion targets using the FastRad3D code

    NASA Astrophysics Data System (ADS)

    Bates, J. W.; Schmitt, A. J.; Karasik, M.; Zalesak, S. T.

    2016-12-01

    The ablative Rayleigh-Taylor (RT) instability is a central issue in the performance of laser-accelerated inertial-confinement-fusion targets. Historically, the accurate numerical simulation of this instability has been a challenging task for many radiation hydrodynamics codes, particularly when it comes to capturing the ablatively stabilized region of the linear dispersion spectrum and modeling ab initio perturbations. Here, we present recent results from two-dimensional numerical simulations of the ablative RT instability in planar laser-ablated foils that were performed using the Eulerian code FastRad3D. Our study considers polystyrene, (cryogenic) deuterium-tritium, and beryllium target materials, quarter- and third-micron laser light, and low and high laser intensities. An initial single-mode surface perturbation is modeled in our simulations as a small modulation to the target mass density and the ablative RT growth-rate is calculated from the time history of areal-mass variations once the target reaches a steady-state acceleration. By performing a sequence of such simulations with different perturbation wavelengths, we generate a discrete dispersion spectrum for each of our examples and find that in all cases the linear RT growth-rate γ is well described by an expression of the form γ = α [ k g / ( 1 + ɛ k L m ) ] 1 / 2 - β k V a , where k is the perturbation wavenumber, g is the acceleration of the target, Lm is the minimum density scale-length, Va is the ablation velocity, and ɛ is either one or zero. The dimensionless coefficients α and β in the above formula depend on the particular target and laser parameters and are determined from two-dimensional simulation results through the use of a nonlinear curve-fitting procedure. While our findings are generally consistent with those of Betti et al. (Phys. Plasmas 5, 1446 (1998)), the ablative RT growth-rates predicted in this investigation are somewhat smaller than the values previously reported for the

  10. Spherical 3D isotropic wavelets

    NASA Astrophysics Data System (ADS)

    Lanusse, F.; Rassat, A.; Starck, J.-L.

    2012-04-01

    Context. Future cosmological surveys will provide 3D large scale structure maps with large sky coverage, for which a 3D spherical Fourier-Bessel (SFB) analysis in spherical coordinates is natural. Wavelets are particularly well-suited to the analysis and denoising of cosmological data, but a spherical 3D isotropic wavelet transform does not currently exist to analyse spherical 3D data. Aims: The aim of this paper is to present a new formalism for a spherical 3D isotropic wavelet, i.e. one based on the SFB decomposition of a 3D field and accompany the formalism with a public code to perform wavelet transforms. Methods: We describe a new 3D isotropic spherical wavelet decomposition based on the undecimated wavelet transform (UWT) described in Starck et al. (2006). We also present a new fast discrete spherical Fourier-Bessel transform (DSFBT) based on both a discrete Bessel transform and the HEALPIX angular pixelisation scheme. We test the 3D wavelet transform and as a toy-application, apply a denoising algorithm in wavelet space to the Virgo large box cosmological simulations and find we can successfully remove noise without much loss to the large scale structure. Results: We have described a new spherical 3D isotropic wavelet transform, ideally suited to analyse and denoise future 3D spherical cosmological surveys, which uses a novel DSFBT. We illustrate its potential use for denoising using a toy model. All the algorithms presented in this paper are available for download as a public code called MRS3D at http://jstarck.free.fr/mrs3d.html

  11. The relation between reconnected flux, the parallel electric field, and the reconnection rate in a three-dimensional kinetic simulation of magnetic reconnection

    SciTech Connect

    Wendel, D. E.; Olson, D. K.; Hesse, M.; Kuznetsova, M.; Adrian, M. L.; Aunai, N.; Karimabadi, H.; Daughton, W.

    2013-12-15

    We investigate the distribution of parallel electric fields and their relationship to the location and rate of magnetic reconnection in a large particle-in-cell simulation of 3D turbulent magnetic reconnection with open boundary conditions. The simulation's guide field geometry inhibits the formation of simple topological features such as null points. Therefore, we derive the location of potential changes in magnetic connectivity by finding the field lines that experience a large relative change between their endpoints, i.e., the quasi-separatrix layer. We find a good correspondence between the locus of changes in magnetic connectivity or the quasi-separatrix layer and the map of large gradients in the integrated parallel electric field (or quasi-potential). Furthermore, we investigate the distribution of the parallel electric field along the reconnecting field lines. We find the reconnection rate is controlled by only the low-amplitude, zeroth and first–order trends in the parallel electric field while the contribution from fluctuations of the parallel electric field, such as electron holes, is negligible. The results impact the determination of reconnection sites and reconnection rates in models and in situ spacecraft observations of 3D turbulent reconnection. It is difficult through direct observation to isolate the loci of the reconnection parallel electric field amidst the large amplitude fluctuations. However, we demonstrate that a positive slope of the running sum of the parallel electric field along the field line as a function of field line length indicates where reconnection is occurring along the field line.

  12. A fast approach to 3D HSQC-based spectroscopy based on a Fourier phase encoding of pre-targeted resonances

    NASA Astrophysics Data System (ADS)

    Lin, Yulan; Smith, Pieter E. S.; Zhang, Zhiyong; Frydman, Lucio

    2017-01-01

    Multidimensional Nuclear Magnetic Resonance (NMR) provides a unique window into structure and dynamics at an atomic level. Traditionally, given the scan-by-scan time modulation involved in these experiments, the duration of nD NMR increases exponentially with spectral dimensionality. In addition, acquisition times increase as the number of spectral elements being sought in each indirect domain - given by the ratio between the spectral bandwidth being targeted and the resolution desired. These long sampling times can be substantially reduced by exploiting information that is often available from lower-dimensionality acquisitions. This work presents a novel approach that exploits previous 2D information to speed up the acquisition of 3D spectra, based on what we denote as a Time-Optimized FouriEr Encoding (TOFEE) of pre-targeted peaks. Such 3D TOFEE experiments, which present points in common with Hadamard-encoded 3D acquisitions, do not necessarily require more scans than their 2D counterparts. This is here demonstrated based on extensions of 2D Heteronuclear Single-quantum Coherence (HSQC) experiments, to 3D HSQC-TOCSY or 3D HSQC-NOESY acquisitions. The theoretical basis of this new approach is given, and experimental demonstrations are presented on small molecule and protein-based model systems.

  13. Statistics of Reconnection-driven Turbulence

    NASA Astrophysics Data System (ADS)

    Kowal, Grzegorz; Falceta-Gonçalves, Diego A.; Lazarian, Alex; Vishniac, Ethan T.

    2017-04-01

    Magnetic reconnection is a process that changes magnetic field topology in highly conducting fluids. Within the standard Sweet–Parker model, this process would be too slow to explain observations (e.g., solar flares). In reality, the process must be ubiquitous as astrophysical fluids are magnetized and motions of fluid elements necessarily entail crossing of magnetic frozen-in field lines and magnetic reconnection. In the presence of turbulence, the reconnection is independent of microscopic plasma properties and may be much faster than previously thought, as proposed in Lazarian & Vishniac and tested in Kowal et al. However, the considered turbulence in the Lazarian–Vishniac model was imposed externally. In this work, we consider reconnection-driven magnetized turbulence in realistic three-dimensional geometry initiated by stochastic noise. We demonstrate through numerical simulations that the stochastic reconnection is able to self-generate turbulence through interactions between the reconnection outflows. We analyze the statistical properties of velocity fluctuations using power spectra and anisotropy scaling in the local reference frame, which demonstrates that the reconnection produces Kolmogorov-like turbulence, compatible with the Goldreich & Sridhar model. Anisotropy statistics are, however, strongly affected by the dynamics of flows generated by the reconnection process. Once the broad turbulent region is formed, the typical anisotropy scaling {l}\\parallel \\propto {l}\\perp 2/3 is formed, especially for high resolution models, where the broader range of scales is available. The decay of reconnection outflows to turbulent-like fluctuations, characterized by different anisotropy scalings, strongly depends on the β plasma parameter. Moreover, the estimated reconnection rates are weakly dependent on the model resolution, suggesting that no external processes are required to make reconnection fast.

  14. R2OBBIE-3D, a Fast Robotic High-Resolution System for Quantitative Phenotyping of Surface Geometry and Colour-Texture

    PubMed Central

    Manukyan, Liana; Milinkovitch, Michel C.

    2015-01-01

    While recent imaging techniques provide insights into biological processes from the molecular to the cellular scale, phenotypes at larger scales remain poorly amenable to quantitative analyses. For example, investigations of the biophysical mechanisms generating skin morphological complexity and diversity would greatly benefit from 3D geometry and colour-texture reconstructions. Here, we report on R2OBBIE-3D, an integrated system that combines a robotic arm, a high-resolution digital colour camera, an illumination basket of high-intensity light-emitting diodes and state-of-the-art 3D-reconstruction approaches. We demonstrate that R2OBBIE generates accurate 3D models of biological objects between 1 and 100 cm, makes multiview photometric stereo scanning possible in practical processing times, and enables the capture of colour-texture and geometric resolutions better than 15 μm without the use of magnifying lenses. R2OBBIE has the potential to greatly improve quantitative analyses of phenotypes in addition to providing multiple new applications in, e.g., biomedical science. PMID:26039509

  15. Reconnection in thin current sheets

    NASA Astrophysics Data System (ADS)

    Tenerani, Anna; Velli, Marco; Pucci, Fulvia; Rappazzo, A. F.

    2016-05-01

    It has been widely believed that reconnection is the underlying mechanism of many explosive processes observed both in nature and laboratory, but the question of reconnection speed and initial trigger have remained mysterious. How is fast magnetic energy release triggered in high Lundquist (S) and Reynolds (R) number plasmas?It has been shown that a tearing mode instability can grow on an ideal timescale, i.e., independent from the the Lundquist number, once the current sheet thickness becomes thin enough, or rather the inverse aspect ratio a/L reaches a scale a/L~S-1/3. As such, the latter provides a natural, critical threshold for current sheets that can be formed in nature before they disrupt in a few Alfvén time units. Here we discuss the transition to fast reconnection extended to simple viscous and kinetic models and we propose a possible scenario for the transition to explosive reconnection in high-Lundquist number plasmas, that we support with fully nonlinear numerical MHD simulations of a collapsing current sheet.

  16. Optical cone beam tomography of Cherenkov-mediated signals for fast 3D dosimetry of x-ray photon beams in water

    SciTech Connect

    Glaser, Adam K. E-mail: Brian.W.Pogue@dartmouth.edu; Andreozzi, Jacqueline M.; Zhang, Rongxiao; Pogue, Brian W. E-mail: Brian.W.Pogue@dartmouth.edu; Gladstone, David J.

    2015-07-15

    Purpose: To test the use of a three-dimensional (3D) optical cone beam computed tomography reconstruction algorithm, for estimation of the imparted 3D dose distribution from megavoltage photon beams in a water tank for quality assurance, by imaging the induced Cherenkov-excited fluorescence (CEF). Methods: An intensified charge-coupled device coupled to a standard nontelecentric camera lens was used to tomographically acquire two-dimensional (2D) projection images of CEF from a complex multileaf collimator (MLC) shaped 6 MV linear accelerator x-ray photon beam operating at a dose rate of 600 MU/min. The resulting projections were used to reconstruct the 3D CEF light distribution, a potential surrogate of imparted dose, using a Feldkamp–Davis–Kress cone beam back reconstruction algorithm. Finally, the reconstructed light distributions were compared to the expected dose values from one-dimensional diode scans, 2D film measurements, and the 3D distribution generated from the clinical Varian ECLIPSE treatment planning system using a gamma index analysis. A Monte Carlo derived correction was applied to the Cherenkov reconstructions to account for beam hardening artifacts. Results: 3D light volumes were successfully reconstructed over a 400 × 400 × 350 mm{sup 3} volume at a resolution of 1 mm. The Cherenkov reconstructions showed agreement with all comparative methods and were also able to recover both inter- and intra-MLC leaf leakage. Based upon a 3%/3 mm criterion, the experimental Cherenkov light measurements showed an 83%–99% pass fraction depending on the chosen threshold dose. Conclusions: The results from this study demonstrate the use of optical cone beam computed tomography using CEF for the profiling of the imparted dose distribution from large area megavoltage photon beams in water.

  17. Optical cone beam tomography of Cherenkov-mediated signals for fast 3D dosimetry of x-ray photon beams in water

    PubMed Central

    Glaser, Adam K.; Andreozzi, Jacqueline M.; Zhang, Rongxiao; Pogue, Brian W.; Gladstone, David J.

    2015-01-01

    Purpose: To test the use of a three-dimensional (3D) optical cone beam computed tomography reconstruction algorithm, for estimation of the imparted 3D dose distribution from megavoltage photon beams in a water tank for quality assurance, by imaging the induced Cherenkov-excited fluorescence (CEF). Methods: An intensified charge-coupled device coupled to a standard nontelecentric camera lens was used to tomographically acquire two-dimensional (2D) projection images of CEF from a complex multileaf collimator (MLC) shaped 6 MV linear accelerator x-ray photon beam operating at a dose rate of 600 MU/min. The resulting projections were used to reconstruct the 3D CEF light distribution, a potential surrogate of imparted dose, using a Feldkamp–Davis–Kress cone beam back reconstruction algorithm. Finally, the reconstructed light distributions were compared to the expected dose values from one-dimensional diode scans, 2D film measurements, and the 3D distribution generated from the clinical Varian ECLIPSE treatment planning system using a gamma index analysis. A Monte Carlo derived correction was applied to the Cherenkov reconstructions to account for beam hardening artifacts. Results: 3D light volumes were successfully reconstructed over a 400 × 400 × 350 mm3 volume at a resolution of 1 mm. The Cherenkov reconstructions showed agreement with all comparative methods and were also able to recover both inter- and intra-MLC leaf leakage. Based upon a 3%/3 mm criterion, the experimental Cherenkov light measurements showed an 83%–99% pass fraction depending on the chosen threshold dose. Conclusions: The results from this study demonstrate the use of optical cone beam computed tomography using CEF for the profiling of the imparted dose distribution from large area megavoltage photon beams in water. PMID:26133613

  18. Reconnection of Magnetic Fields

    NASA Technical Reports Server (NTRS)

    1984-01-01

    Spacecraft observations of steady and nonsteady reconnection at the magnetopause are reviewed. Computer simulations of three-dimensional reconnection in the geomagnetic tail are discussed. Theoretical aspects of the energization of particles in current sheets and of the microprocesses in the diffusion region are presented. Terrella experiments in which magnetospheric reconnection is simulated at both the magnetopause and in the tail are described. The possible role of reconnection in the evolution of solar magnetic fields and solar flares is discussed. A two-dimensional magnetohydrodynamic computer simulation of turbulent reconnection is examined. Results concerning reconnection in Tokamak devices are also presented.

  19. Three-dimensional Spontaneous Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Beresnyak, Andrey

    2017-01-01

    Magnetic reconnection is best known from observations of the Sun where it causes solar flares. Observations estimate the reconnection rate as a small, but non-negligible fraction of the Alfvén speed, so-called fast reconnection. Until recently, the prevailing pictures of reconnection were either of resistivity or plasma microscopic effects, which was contradictory to the observed rates. Alternative pictures were either of reconnection due to the stochasticity of magnetic field lines in turbulence or the tearing instability of the thin current sheet. In this paper we simulate long-term three-dimensional nonlinear evolution of a thin, planar current sheet subject to a fast oblique tearing instability using direct numerical simulations of resistive-viscous magnetohydrodynamics. The late-time evolution resembles generic turbulence with a ‑5/3 power spectrum and scale-dependent anisotropy, so we conclude that the tearing-driven reconnection becomes turbulent reconnection. The turbulence is local in scale, so microscopic diffusivity should not affect large-scale quantities. This is confirmed by convergence of the reconnection rate toward ∼ 0.015{v}{{A}} with increasing Lundquist number. In this spontaneous reconnection, with mean field and without driving, the dissipation rate per unit area also converges to ∼ 0.006ρ {v}{{A}}3, and the dimensionless constants 0.015 and 0.006 are governed only by self-driven nonlinear dynamics of the sheared magnetic field. Remarkably, this also means that a thin current sheet has a universal fluid resistance depending only on its length to width ratio and to {v}{{A}}/c.

  20. A Fast Parallel Simulation Code for Interaction between Proto-Planetary Disk and Embedded Proto-Planets: Implementation for 3D Code

    SciTech Connect

    Li, Shengtai; Li, Hui

    2012-06-14

    We develop a 3D simulation code for interaction between the proto-planetary disk and embedded proto-planets. The protoplanetary disk is treated as a three-dimensional (3D), self-gravitating gas whose motion is described by the locally isothermal Navier-Stokes equations in a spherical coordinate centered on the star. The differential equations for the disk are similar to those given in Kley et al. (2009) with a different gravitational potential that is defined in Nelson et al. (2000). The equations are solved by directional split Godunov method for the inviscid Euler equations plus operator-split method for the viscous source terms. We use a sub-cycling technique for the azimuthal sweep to alleviate the time step restriction. We also extend the FARGO scheme of Masset (2000) and modified in Li et al. (2001) to our 3D code to accelerate the transport in the azimuthal direction. Furthermore, we have implemented a reduced 2D (r, {theta}) and a fully 3D self-gravity solver on our uniform disk grid, which extends our 2D method (Li, Buoni, & Li 2008) to 3D. This solver uses a mode cut-off strategy and combines FFT in the azimuthal direction and direct summation in the radial and meridional direction. An initial axis-symmetric equilibrium disk is generated via iteration between the disk density profile and the 2D disk-self-gravity. We do not need any softening in the disk self-gravity calculation as we have used a shifted grid method (Li et al. 2008) to calculate the potential. The motion of the planet is limited on the mid-plane and the equations are the same as given in D'Angelo et al. (2005), which we adapted to the polar coordinates with a fourth-order Runge-Kutta solver. The disk gravitational force on the planet is assumed to evolve linearly with time between two hydrodynamics time steps. The Planetary potential acting on the disk is calculated accurately with a small softening given by a cubic-spline form (Kley et al. 2009). Since the torque is extremely sensitive to

  1. Collaborative Project. 3D Radiative Transfer Parameterization Over Mountains/Snow for High-Resolution Climate Models. Fast physics and Applications

    SciTech Connect

    Liou, Kuo-Nan

    2016-02-09

    Under the support of the aforementioned DOE Grant, we have made two fundamental contributions to atmospheric and climate sciences: (1) Develop an efficient 3-D radiative transfer parameterization for application to intense and intricate inhomogeneous mountain/snow regions. (2) Innovate a stochastic parameterization for light absorption by internally mixed black carbon and dust particles in snow grains for understanding and physical insight into snow albedo reduction in climate models. With reference to item (1), we divided solar fluxes reaching mountain surfaces into five components: direct and diffuse fluxes, direct- and diffuse-reflected fluxes, and coupled mountain-mountain flux. “Exact” 3D Monte Carlo photon tracing computations can then be performed for these solar flux components to compare with those calculated from the conventional plane-parallel (PP) radiative transfer program readily available in climate models. Subsequently, Parameterizations of the deviations of 3D from PP results for five flux components are carried out by means of the multiple linear regression analysis associated with topographic information, including elevation, solar incident angle, sky view factor, and terrain configuration factor. We derived five regression equations with high statistical correlations for flux deviations and successfully incorporated this efficient parameterization into WRF model, which was used as the testbed in connection with the Fu-Liou-Gu PP radiation scheme that has been included in the WRF physics package. Incorporating this 3D parameterization program, we conducted simulations of WRF and CCSM4 to understand and evaluate the mountain/snow effect on snow albedo reduction during seasonal transition and the interannual variability for snowmelt, cloud cover, and precipitation over the Western United States presented in the final report. With reference to item (2), we developed in our previous research a geometric-optics surface-wave approach (GOS) for the

  2. Europeana and 3D

    NASA Astrophysics Data System (ADS)

    Pletinckx, D.

    2011-09-01

    The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  3. The kinetic scale structure of the Plasma Sheet Boundary Layer: Implications of collisionless magnetic reconnection and first MMS observations

    NASA Astrophysics Data System (ADS)

    Dorelli, J.; Gershman, D. J.; Avanov, L. A.; Pollock, C. J.; Giles, B. L.; Nakamura, R.; Chen, L. J.; Torbert, R. B.; Gliese, U.; Barrie, A. C.; Holland, M. P.; Chandler, M. O.; Coffey, V. N.; MacDonald, E.; Salo, C.; Dickson, C.; Saito, Y.; Russell, C. T.; Baumjohann, W.; Burch, J. L.

    2015-12-01

    The relationship between magnetic reconnection and the Plasma Sheet Boundary Layer (PSBL) is still an open problem in magnetospheric physics. While one can understand observed PSBL velocity distributions on the basis of a simple steady state drift-kinetic model with prescribed electric and magnetic fields (e.g., Onsager et al. [1990,1991]), such models do not incorporate the kinetic scale dynamics at the reconnection site. For example, Shay et al. [2011] have argued that the out-of-plane quadrupole magnetic field pattern at the reconnection site can be viewed as an obliquely propagating kinetic Alfvén wave with very large parallel group velocity, the implication being that the field-aligned current structure should quickly become global, though still confined to field lines connected to the ion diffusion region at the reconnection site. This raises the very interesting question: How would such a global wave structure appear in the PSBL on the kinetic scale? Here, we present some first observations of the PSBL by NASA's Magnetospheric Multiscale (MMS) mission where Fast Plasma Investigation (FPI) Burst Data (30 ms and 150 ms resolution for 3D electron and ion velocity distributions, respectively) is available during intervals where lower resolution (4.5 s) Fast Survey distributions showed evidence of connection to a remote reconnection site. This allows us to test for the first time whether the quadrupole magnetic field structure near the reconnection site -- a local structure already observed by previous spacecraft -- does indeed support a global field-aligned current pattern around the magnetic separatrix. We will also probe for the first time the electron kinetic scale sub-structure of the PSBL and compare with electron-scale features observed near the magnetic separatrix at the dayside magnetopause.

  4. Magnetic field reconnection

    NASA Astrophysics Data System (ADS)

    Axford, W. I.

    The fundamental principles of particle acceleration by magnetic reconnection in cosmic plasmas are reviewed. The history of reconnection models is traced, and consideration is given to the Kelvin-Helmholtz theorem, the frozen-field theorem, the application of the Kelvin-Helmholtz theorem to a collisionless plasma, solutions to specific reconnection problems, and configurational instability. Diagrams and graphs are provided, and the objections raised by critics of the reconnection theory and/or its astrophysical applications are discussed.

  5. Inferring proximity to the reconnection site via structural changes to the magnetopause caused by asymmetric reconnection.

    NASA Astrophysics Data System (ADS)

    Argall, M. R.; Chen, L. J.; Torbert, R. B.; Daughton, W. S.; Yoo, J.; Yamada, M.

    2014-12-01

    The mechanisms of field line breaking and magnetic energy dissipation that result in magnetic reconnection have yet to be determined by spacecraft observations. Many parameters have been proposed to locate the reconnection site, but they either fail to identify uniquely the reconnection site or have not been tested for asymmetric reconnection. We demonstrate that the change in magnetopause structure caused by reconnection can be used to locate and estimate proximity to the site of reconnection. Cluster observations of quiet magnetopause crossings, for which no evidence of reconnection is found, show no obvious spatial dependence of the DC electric field, while the plasma density and velocity make the transition from magnetosheath to magnetosphere values simultaneously with the tangential magnetic field (BL) reversal. Conversely, in-situ observations of several active crossings, for which signs of reconnection are evident, show that the density transition and BL reversal can occur simultaneously or be offset from one another by over 100 ion skin depths (λi) (assuming a constant magnetopause velocity), the outflow jet can occur anywhere from the BL reversal to several λi earthward of the density gradient, and the DC electric field changes sign on either side of the density gradient. Laboratory experiments and 2D and 3D particle-in-cell simulations of asymmetric reconnection reveal that the relative transition offsets are due to exhaust crossings at different proximities to the X-line. Only within the thin electron current layer surrounding the X-line do the transitions remain concurrent. We present one reconnection event during which the transitions in plasma density, DC electric field, and BL are simultaneous in two of the four Cluster spacecraft and offset in the other two spacecraft. The multiple satellite encounter allows us to examine spatial features in the region surrounding the X-line.

  6. Reconnection rates in driven magnetic reconnection

    SciTech Connect

    Birn, J.; Hesse, M.

    2007-08-15

    Using resistive magnetohydrodynamic simulations, we investigate the influence of various parameters on the reconnection rate in two scenarios of magnetic reconnection. The first scenario consists of the ''Newton Challenge'' problem [Birn et al., Geophys. Res. Lett. 32, L06105 (2005)]. In this scenario, reconnection is initiated in a plane Harris-type current sheet by temporally limited, spatially varying, inflow of magnetic flux. The second scenario consists of the well-studied island coalescence problem. This scenario starts from an equilibrium containing periodic magnetic islands with parallel current filaments. Due to the attraction between parallel currents, pairs of islands may move toward each other, forming a current sheet in between. This leads to reconnection and ultimately the merging of islands. In either scenario, magnetic reconnection may be considered as being driven by external or internal forcing. Consistent with that interpretation we find that in either case the maximum reconnection rate (electric field) depends approximately linearly on the maximum driving electric field, when other parameters remain unchanged. However, this can be understood mostly from the change of characteristic background parameters; particularly, the increase of the magnetic field strength in the inflow region due to the added magnetic flux. This interpretation is consistent with the result that the maximum of the reconnection electric field is assumed significantly later (tens of Alfven times) than the maximum driving and typically does not match the instantaneous driving electric field. Furthermore, the reconnection rate also depends on the resistivity and the time scale of the driving.

  7. Impulsive Reconnection in the Sun's Atmosphere

    NASA Technical Reports Server (NTRS)

    Antiochos, Spiro K.

    2009-01-01

    Recent high-resolution observations from the Hinode mission show dramatically that the Sun's atmosphere is filled with explosive activity ranging from chromospheric explosions that reach heights of Mm, to coronal jets that can extend to solar radii, to giant coronal mass ejections (CME) that reach the edge of the heliosphere. The driver for all this activity is believed to be 3D magnetic reconnection. From the large variation observed in the temporal behavior of solar activity, it is clear that reconnection in the corona must take on a variety of distinct forms. The explosive nature of jets and CMEs requires that the reconnection be impulsive in that it stays off until a substantial store of free energy has been accumulated, but then turns on abruptly and stays on until much of this free energy is released. The key question, therefore, is what determines whether the reconnection is impulsive or not. We present some of the latest observations and numerical models of explosive and non-explosive solar activity. We argue that, in order for the reconnection to be impulsive, it must be driven by a quasi-ideal instability. We discuss the generality of our results for understanding 31) reconnection in other contexts.

  8. WE-A-17A-10: Fast, Automatic and Accurate Catheter Reconstruction in HDR Brachytherapy Using An Electromagnetic 3D Tracking System

    SciTech Connect

    Poulin, E; Racine, E; Beaulieu, L; Binnekamp, D

    2014-06-15

    Purpose: In high dose rate brachytherapy (HDR-B), actual catheter reconstruction protocols are slow and errors prompt. The purpose of this study was to evaluate the accuracy and robustness of an electromagnetic (EM) tracking system for improved catheter reconstruction in HDR-B protocols. Methods: For this proof-of-principle, a total of 10 catheters were inserted in gelatin phantoms with different trajectories. Catheters were reconstructed using a Philips-design 18G biopsy needle (used as an EM stylet) and the second generation Aurora Planar Field Generator from Northern Digital Inc. The Aurora EM system exploits alternating current technology and generates 3D points at 40 Hz. Phantoms were also scanned using a μCT (GE Healthcare) and Philips Big Bore clinical CT system with a resolution of 0.089 mm and 2 mm, respectively. Reconstructions using the EM stylet were compared to μCT and CT. To assess the robustness of the EM reconstruction, 5 catheters were reconstructed twice and compared. Results: Reconstruction time for one catheter was 10 seconds or less. This would imply that for a typical clinical implant of 17 catheters, the total reconstruction time would be less than 3 minutes. When compared to the μCT, the mean EM tip identification error was 0.69 ± 0.29 mm while the CT error was 1.08 ± 0.67 mm. The mean 3D distance error was found to be 0.92 ± 0.37 mm and 1.74 ± 1.39 mm for the EM and CT, respectively. EM 3D catheter trajectories were found to be significantly more accurate (unpaired t-test, p < 0.05). A mean difference of less than 0.5 mm was found between successive EM reconstructions. Conclusion: The EM reconstruction was found to be faster, more accurate and more robust than the conventional methods used for catheter reconstruction in HDR-B. This approach can be applied to any type of catheters and applicators. We would like to disclose that the equipments, used in this study, is coming from a collaboration with Philips Medical.

  9. RESISTIVE MAGNETOHYDRODYNAMIC SIMULATIONS OF RELATIVISTIC MAGNETIC RECONNECTION

    SciTech Connect

    Zenitani, Seiji; Hesse, Michael; Klimas, Alex

    2010-06-20

    Resistive relativistic magnetohydrodynamic (RRMHD) simulations are applied to investigate the system evolution of relativistic magnetic reconnection. A time-split Harten-Lan-van Leer method is employed. Under a localized resistivity, the system exhibits a fast reconnection jet with an Alfvenic Lorentz factor inside a narrow Petschek-type exhaust. Various shock structures are resolved in and around the plasmoid such as the post-plasmoid vertical shocks and the 'diamond-chain' structure due to multiple shock reflections. Under a uniform resistivity, Sweet-Parker-type reconnection slowly evolves. Under a current-dependent resistivity, plasmoids are repeatedly formed in an elongated current sheet. It is concluded that the resistivity model is of critical importance for RRMHD modeling of relativistic magnetic reconnection.

  10. Resistive Magnetohydrodynamic Simulations of Relativistic Magnetic Reconnection

    NASA Technical Reports Server (NTRS)

    Zenitani, Seiji; Hesse, Michael; Klimas, Alex

    2010-01-01

    Resistive relativistic magnetohydrodynamic (RRMHD) simulations are applied to investigate the system evolution of relativistic magnetic reconnection. A time-split Harten-Lan-van Leer method is employed. Under a localized resistivity, the system exhibits a fast reconnection jet with an Alfv enic Lorentz factor inside a narrow Petschek-type exhaust. Various shock structures are resolved in and around the plasmoid such as the post-plasmoid vertical shocks and the "diamond-chain" structure due to multiple shock reflections. Under a uniform resistivity, Sweet-Parker-type reconnection slowly evolves. Under a current-dependent resistivity, plasmoids are repeatedly formed in an elongated current sheet. It is concluded that the resistivity model is of critical importance for RRMHD modeling of relativistic magnetic reconnection.

  11. Resistive Magnetohydrodynamic Simulations of Relativistic Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Zenitani, Seiji; Hesse, Michael; Klimas, Alex

    2010-06-01

    Resistive relativistic magnetohydrodynamic (RRMHD) simulations are applied to investigate the system evolution of relativistic magnetic reconnection. A time-split Harten-Lan-van Leer method is employed. Under a localized resistivity, the system exhibits a fast reconnection jet with an Alfvénic Lorentz factor inside a narrow Petschek-type exhaust. Various shock structures are resolved in and around the plasmoid such as the post-plasmoid vertical shocks and the "diamond-chain" structure due to multiple shock reflections. Under a uniform resistivity, Sweet-Parker-type reconnection slowly evolves. Under a current-dependent resistivity, plasmoids are repeatedly formed in an elongated current sheet. It is concluded that the resistivity model is of critical importance for RRMHD modeling of relativistic magnetic reconnection.

  12. Fast Gated EPR Imaging of the Beating Heart: Spatiotemporally-Resolved 3D Imaging of Free Radical Distribution during the Cardiac Cycle

    PubMed Central

    Chen, Zhiyu; Reyes, Levy A.; Johnson, David H.; Velayutham, Murugesan; Yang, Changjun; Samouilov, Alexandre; Zweier, Jay L.

    2012-01-01

    In vivo or ex vivo electron paramagnetic resonance imaging (EPRI) is a powerful technique for determining the spatial distribution of free radicals and other paramagnetic species in living organs and tissues. However, applications of EPRI have been limited by long projection acquisition times and the consequent fact that rapid gated EPRI was not possible. Hence in vivo EPRI typically provided only time-averaged information. In order to achieve direct gated EPRI, a fast EPR acquisition scheme was developed to decrease EPR projection acquisition time down to 10 – 20 ms, along with corresponding software and instrumentation to achieve fast gated EPRI of the isolated beating heart with submillimeter spatial resolution in as little as 2 to 3 minutes. Reconstructed images display temporal and spatial variations of the free radical distribution, anatomical structure, and contractile function within the rat heart during the cardiac cycle. PMID:22473660

  13. A fast mode decision algorithm for multiview auto-stereoscopic 3D video coding based on mode and disparity statistic analysis

    NASA Astrophysics Data System (ADS)

    Ding, Cong; Sang, Xinzhu; Zhao, Tianqi; Yan, Binbin; Leng, Junmin; Yuan, Jinhui; Zhang, Ying

    2012-11-01

    Multiview video coding (MVC) is essential for applications of the auto-stereoscopic three-dimensional displays. However, the computational complexity of MVC encoders is tremendously huge. Fast algorithms are very desirable for the practical applications of MVC. Based on joint early termination , the selection of inter-view prediction and the optimization of the process of Inter8×8 modes by comparison, a fast macroblock(MB) mode selection algorithm is presented. Comparing with the full mode decision in MVC, the experimental results show that the proposed algorithm can reduce up to 78.13% on average and maximum 90.21% encoding time with a little increase in bit rates and loss in PSNR.

  14. 3d-3d correspondence revisited

    DOE PAGES

    Chung, Hee -Joong; Dimofte, Tudor; Gukov, Sergei; ...

    2016-04-21

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d N = 2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. As a result, we also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  15. Forced reconnection in the Hall limit

    NASA Astrophysics Data System (ADS)

    Huba, J. D.

    2006-12-01

    We present new numerical results of the dynamics of forced magnetic reconnection in the Hall limit using the NRL Hall MHD code VooDoo. The system is forced by imposing inflow boundary conditions on the plasma density and velocity, and the magnetic field. A magnetic field of opposite polarity is injected from opposite boundaries. The inflow velocity is spatially uniform but the density profile is spatially nonuniform which allows an X-line to develop and magnetic reconnection to proceed. We present simulation results for various inflow conditions in both 2D and 3D geometries. We apply our results to laboratory and space plasma processes. Research supported by ONR and NASA.

  16. Forced Reconnection in the Hall Limit

    NASA Astrophysics Data System (ADS)

    Huba, J.

    2006-10-01

    We present new numerical results of the dynamics of forced magnetic reconnection in the Hall limit using the NRL Hall MHD code VooDoo. The system is forced by imposing inflow boundary conditions on the plasma density and velocity, and the magnetic field. A magnetic field of opposite polarity is injected from opposite boundaries. The inflow velocity is spatially uniform but the density profile is spatially nonuniform which allows an X-line to develop and magnetic reconnection to proceed. We present simulation results for various inflow conditions in both 2D and 3D geometries. We apply our results to laboratory and space plasma processes.

  17. Intraoral 3D scanner

    NASA Astrophysics Data System (ADS)

    Kühmstedt, Peter; Bräuer-Burchardt, Christian; Munkelt, Christoph; Heinze, Matthias; Palme, Martin; Schmidt, Ingo; Hintersehr, Josef; Notni, Gunther

    2007-09-01

    Here a new set-up of a 3D-scanning system for CAD/CAM in dental industry is proposed. The system is designed for direct scanning of the dental preparations within the mouth. The measuring process is based on phase correlation technique in combination with fast fringe projection in a stereo arrangement. The novelty in the approach is characterized by the following features: A phase correlation between the phase values of the images of two cameras is used for the co-ordinate calculation. This works contrary to the usage of only phase values (phasogrammetry) or classical triangulation (phase values and camera image co-ordinate values) for the determination of the co-ordinates. The main advantage of the method is that the absolute value of the phase at each point does not directly determine the coordinate. Thus errors in the determination of the co-ordinates are prevented. Furthermore, using the epipolar geometry of the stereo-like arrangement the phase unwrapping problem of fringe analysis can be solved. The endoscope like measurement system contains one projection and two camera channels for illumination and observation of the object, respectively. The new system has a measurement field of nearly 25mm × 15mm. The user can measure two or three teeth at one time. So the system can by used for scanning of single tooth up to bridges preparations. In the paper the first realization of the intraoral scanner is described.

  18. Collisionless Reconnection and Electron Demagnetization

    NASA Astrophysics Data System (ADS)

    Scudder, J. D.

    Observable, dimensionless properties of the electron diffusion region of collisionless magnetic reconnection are motivated and benchmarked in two and three dimensional Particle In Cell (PIC) simulations as appropriate for measurements with present state of the art spacecraft. The dimensionless quantities of this paper invariably trace their origin to breaking the magnetization of the thermal electrons. Several observable proxies are also motivated for the rate of frozen flux violation and a parameter \\varLambda _{\\varPhi } that when greater than unity is associated with close proximity to the analogue of the saddle point region of 2D reconnection usually called the electron diffusion region. Analogous regions to the electron diffusion region of 2D reconnection with \\varLambda _{\\varPhi } > 1 have been identified in 3D simulations. 10-20 disjoint diffusion regions are identified and the geometrical patterns of their locations illustrated. First examples of associations between local observables based on electron demagnetization and global diagnostics (like squashing) are also presented. A by product of these studies is the development of a single spacecraft determinations of gradient scales in the plasma.

  19. Study on characteristics of 3-D translating-pulsating source green function of deep-water havelock form and its fast integration method

    NASA Astrophysics Data System (ADS)

    Xu, Yong; Dong, Wen-Cai

    2011-09-01

    The singularities, oscillatory performances and the contributing factors to the 3-D translating-pulsating source Green function of deep-water Havelock form which consists of a local disturbance part and a far-field wave-like part, are analyzed systematically. Relative numerical integral methods about the two parts are presented in this paper. An improved method based on LOBATTO rule is used to eliminate singularities caused respectively by infinite discontinuity and jump discontinuous node from the local disturbance part function, which makes the improvement of calculation efficiency and accuracy possible. And variable substitution is applied to remove the singularity existing at the end of the integral interval of the far-field wave-like part function. Two auxiliary techniques such as valid interval calculation and local refinement of integral steps technique in narrow zones near false singularities are applied so as to avoid unnecessary integration of invalid interval and improve integral accordance. Numerical test results have proved the efficiency and accuracy in these integral methods that thus can be applied to calculate hydrodynamic performance of floating structures moving in waves.

  20. The 3-D description of vertical current sheets with application to solar flares

    NASA Technical Reports Server (NTRS)

    Fontenla, Juan M.; Davis, J. M.

    1991-01-01

    Following a brief review of the processes which have been suggested for explaining the occurrence of solar flares we suggest a new scenario which builds on the achievements of the previous suggestion that the current sheets, which develop naturally in 3-D cases with gravity from impacting independent magnetic structures (i.e., approaching current systems), do not consist of horizontal currents but are instead predominantly vertical current systems. This suggestion is based on the fact that as the subphotospheric sources of the magnetic field displace the upper photosphere and lower chromosphere regions, where plasma beta is near unity, will experience predominantly horizontal mass motions which will lead to a distorted 3-D configurations of the magnetic field having stored free energy. In our scenario, a vertically flowing current sheet separates the plasma regions associated with either of the subphotospheric sources. This reflects the balanced tension of the two stressed fields which twist around each other. This leads naturally to a metastable or unstable situation as the twisted field emerges into a low beta region where vertical motions are not inhibited by gravity. In our flare scenario the impulsive energy release occurs, initially, not by reconnection but mainly by the rapid change of the magnetic field which has become unstable. During the impulsive phase the field lines contort in such way as to realign the electric current sheet into a minimum energy horizontal flow. This contortion produces very large electric fields which will accelerate particles. As the current evolves to a horizontal configuration the magnetic field expands vertically, which can be accompanied by eruptions of material. The instability of a horizontal current is well known and causes the magnetic field to undergo a rapid outward expansion. In our scenario, fast reconnection is not necessary to trigger the flare, however, slow reconnection would occur continuously in the current layer

  1. Fast Li-Ion-Conducting Garnet-Related Li7–3xFexLa3Zr2O12 with Uncommon I4̅3d Structure

    PubMed Central

    2016-01-01

    Fast Li-ion-conducting Li oxide garnets receive a great deal of attention as they are suitable candidates for solid-state Li electrolytes. It was recently shown that Ga-stabilized Li7La3Zr2O12 crystallizes in the acentric cubic space group I4̅3d. This structure can be derived by a symmetry reduction of the garnet-type Ia3̅d structure, which is the most commonly found space group of Li oxide garnets and garnets in general. In this study, single-crystal X-ray diffraction confirms the presence of space group I4̅3d also for Li7–3xFexLa3Zr2O12. The crystal structure was characterized by X-ray powder diffraction, single-crystal X-ray diffraction, neutron powder diffraction, and Mößbauer spectroscopy. The crystal–chemical behavior of Fe3+ in Li7La3Zr2O12 is very similar to that of Ga3+. The symmetry reduction seems to be initiated by the ordering of Fe3+ onto the tetrahedral Li1 (12a) site of space group I4̅3d. Electrochemical impedance spectroscopy measurements showed a Li-ion bulk conductivity of up to 1.38 × 10–3 S cm–1 at room temperature, which is among the highest values reported for this group of materials. PMID:27570369

  2. 3D and Education

    NASA Astrophysics Data System (ADS)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  3. 3D carotid plaque MR Imaging

    PubMed Central

    Parker, Dennis L.

    2015-01-01

    SYNOPSIS There has been significant progress made in 3D carotid plaque magnetic resonance imaging techniques in recent years. 3D plaque imaging clearly represents the future in clinical use. With effective flow suppression techniques, choices of different contrast weighting acquisitions, and time-efficient imaging approaches, 3D plaque imaging offers flexible imaging plane and view angle analysis, large coverage, multi-vascular beds capability, and even can be used in fast screening. PMID:26610656

  4. 3D quantification of dynamic fluid-fluid interfaces in porous media with fast x-ray microtomography: A comparison with quasi-equilibrium methods

    NASA Astrophysics Data System (ADS)

    Meisenheimer, D.; Brueck, C. L.; Wildenschild, D.

    2015-12-01

    X-ray microtomography imaging of fluid-fluid interfaces in three-dimensional porous media allows for the testing of thermodynamically derived predictions that seek a unique relationship between capillary pressure, fluid saturation, and specific interfacial area (Pc-Sw-Anw). Previous experimental studies sought to test this functional dependence under quasi-equilibrium conditions (assumed static on the imaging time-scale); however, applying predictive models developed under static conditions for dynamic scenarios can lead to substantial flaws in predicted outcomes. Theory and models developed using dynamic data can be verified using fast x-ray microtomography which allows for the unprecedented measurement of developing interfacial areas, curvatures, and trapping behaviors of fluid phases in three-dimensional systems. We will present results of drainage and imbibition experiments of air and water within a mixture of glass beads. The experiments were performed under both quasi-equilibrium and dynamic conditions at the Advanced Photon Source (APS) at Argonne National Laboratory. Fast x-ray microtomography was achieved by utilizing the high brilliance of the x-ray beam at the APS under pink-beam conditions where the white beam is modified with a 4 mm Al absorber and a 0.8 mrad Pt-coated mirror to eliminate low and high-energy photons, respectively. We present a comparison of the results from the quasi-equilibrium and dynamic experiments in an effort to determine if the Pc-Sw-Anw relationship is comparable under either experimental condition and to add to the discussion on whether the Pc-Sw-Anw relationship is unique as hypothesized by existing theory.

  5. Experimental study of ion heating and acceleration during magnetic reconnection

    SciTech Connect

    Hsu, S.C.

    2000-01-28

    This dissertation reports an experimental study of ion heating and acceleration during magnetic reconnection, which is the annihilation and topological rearrangement of magnetic flux in a conductive plasma. Reconnection is invoked often to explain particle heating and acceleration in both laboratory and naturally occurring plasmas. However, a simultaneous account of reconnection and its associated energy conversion has been elusive due to the extreme inaccessibility of reconnection events, e.g. in the solar corona, the Earth's magnetosphere, or in fusion research plasmas. Experiments for this work were conducted on MRX (Magnetic Reconnection Experiment), which creates a plasma environment allowing the reconnection process to be isolated, reproduced, and diagnosed in detail. Key findings of this work are the identification of local ion heating during magnetic reconnection and the determination that non-classical effects must provide the heating mechanism. Measured ion flows are sub-Alfvenic and can provide only slight viscous heating, and classical ion-electron interactions can be neglected due to the very long energy equipartition time. The plasma resistivity in the reconnection layer is seen to be enhanced over the classical value, and the ion heating is observed to scale with the enhancement factor, suggesting a relationship between the magnetic energy dissipation mechanism and the ion heating mechanism. The observation of non-classical ion heating during reconnection has significant implications for understanding the role played by non-classical dissipation mechanisms in generating fast reconnection. The findings are relevant for many areas of space and laboratory plasma research, a prime example being the currently unsolved problem of solar coronal heating. In the process of performing this work, local measurements of ion temperature and flows in a well-characterized reconnection layer were obtained for the first time in either laboratory or observational

  6. 3D Fast Spin Echo With Out-of-Slab Cancellation: A Technique for High-Resolution Structural Imaging of Trabecular Bone at 7 Tesla

    PubMed Central

    Magland, Jeremy F.; Rajapakse, Chamith S.; Wright, Alexander C.; Acciavatti, Raymond; Wehrli, Felix W.

    2016-01-01

    Spin-echo-based pulse sequences are desirable for the application of high-resolution imaging of trabecular bone but tend to involve high-power deposition. Increased availability of ultrahigh field scanners has opened new possibilities for imaging with increased signal-to-noise ratio (SNR) efficiency, but many pulse sequences that are standard at 1.5 and 3 T exceed specific absorption rate limits at 7 T. A modified, reduced specific absorption rate, three-dimensional, fast spin-echo pulse sequence optimized specifically for in vivo trabecular bone imaging at 7 T is introduced. The sequence involves a slab-selective excitation pulse, low-power nonselective refocusing pulses, and phase cycling to cancel undesired out-of-slab signal. In vivo images of the distal tibia were acquired using the technique at 1.5, 3, and 7 T field strengths, and SNR was found to increase at least linearly using receive coils of identical geometry. Signal dependence on the choice of refocusing flip angles in the echo train was analyzed experimentally and theoretically by combining the signal from hundreds of coherence pathways, and it is shown that a significant specific absorption rate reduction can be achieved with negligible SNR loss. PMID:20187181

  7. Adaptive-weighted cubic B-spline using lookup tables for fast and efficient axial resampling of 3D confocal microscopy images.

    PubMed

    Indhumathi, C; Cai, Y Y; Guan, Y Q; Opas, M; Zheng, J

    2012-01-01

    Confocal laser scanning microscopy has become a most powerful tool to visualize and analyze the dynamic behavior of cellular molecules. Photobleaching of fluorochromes is a major problem with confocal image acquisition that will lead to intensity attenuation. Photobleaching effect can be reduced by optimizing the collection efficiency of the confocal image by fast z-scanning. However, such images suffer from distortions, particularly in the z dimension, which causes disparities in the x, y, and z directions of the voxels with the original image stacks. As a result, reliable segmentation and feature extraction of these images may be difficult or even impossible. Image interpolation is especially needed for the correction of undersampling artifact in the axial plane of three-dimensional images generated by a confocal microscope to obtain cubic voxels. In this work, we present an adaptive cubic B-spline-based interpolation with the aid of lookup tables by deriving adaptive weights based on local gradients for the sampling nodes in the interpolation formulae. Thus, the proposed method enhances the axial resolution of confocal images by improving the accuracy of the interpolated value simultaneously with great reduction in computational cost. Numerical experimental results confirm the effectiveness of the proposed interpolation approach and demonstrate its superiority both in terms of accuracy and speed compared to other interpolation algorithms.

  8. Application of Stereo Vision to the Reconnection Scaling Experiment

    SciTech Connect

    Klarenbeek, Johnny; Sears, Jason A.; Gao, Kevin W.; Intrator, Thomas P.; Weber, Thomas

    2012-08-14

    The measurement and simulation of the three-dimensional structure of magnetic reconnection in astrophysical and lab plasmas is a challenging problem. At Los Alamos National Laboratory we use the Reconnection Scaling Experiment (RSX) to model 3D magnetohydrodynamic (MHD) relaxation of plasma filled tubes. These magnetic flux tubes are called flux ropes. In RSX, the 3D structure of the flux ropes is explored with insertable probes. Stereo triangulation can be used to compute the 3D position of a probe from point correspondences in images from two calibrated cameras. While common applications of stereo triangulation include 3D scene reconstruction and robotics navigation, we will investigate the novel application of stereo triangulation in plasma physics to aid reconstruction of 3D data for RSX plasmas. Several challenges will be explored and addressed, such as minimizing 3D reconstruction errors in stereo camera systems and dealing with point correspondence problems.

  9. Fast Domain Partitioning Method for dynamic boundary integral equations applicable to non-planar faults dipping in 3-D elastic half-space

    NASA Astrophysics Data System (ADS)

    Ando, Ryosuke

    2016-11-01

    The elastodynamic boundary integral equation method (BIEM) in real space and in the temporal domain is an accurate semi-analytical tool to investigate the earthquake rupture dynamics on non-planar faults. However, its heavy computational demand for a historic integral generally increases with a time complexity of O(MN3)for the number of time steps N and elements M due to volume integration in the causality cone. In this study, we introduce an efficient BIEM, termed the `Fast Domain Partitioning Method' (FDPM), which enables us to reduce the computation time to the order of the surface integral, O(MN2), without degrading the accuracy. The memory requirement is also reduced to O(M2) from O(M2N). FDPM uses the physical nature of Green's function for stress to partition the causality cone into the domains of the P and S wave fronts, the domain in-between the P and S wave fronts, and the domain of the static equilibrium, where the latter two domains exhibit simpler dependences on time and/or space. The scalability of this method is demonstrated on the large-scale parallel computing environments of distributed memory systems. It is also shown that FDPM enables an efficient use of memory storage, which makes it possible to reduce computation times to a previously unprecedented level. We thus present FDPM as a powerful tool to break through the current fundamental difficulties in running dynamic simulations of coseismic ruptures and earthquake cycles under realistic conditions of fault geometries.

  10. 3D Imaging.

    ERIC Educational Resources Information Center

    Hastings, S. K.

    2002-01-01

    Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)

  11. The Relation between Reconnected Flux, the Parallel Electric Field, and the Reconnection Rate in a Three-Dimensional Kinetic Simulation of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Wendel, D. E.; Olson, D. K.; Hesse, M.; Karimabadi, H.; Daughton, W. S.

    2013-12-01

    We investigate the distribution of parallel electric fields and their relationship to the location and rate of magnetic reconnection of a large particle-in-cell simulation of 3D turbulent magnetic reconnection with open boundary conditions. The simulation's guide field geometry inhibits the formation of topological features such as separators and null points. Therefore, we derive the location of potential changes in magnetic connectivity by finding the field lines that experience a large relative change between their endpoints, i.e., the quasi-separatrix layer. We find a correspondence between the locus of changes in magnetic connectivity, or the quasi-separatrix layer, and the map of large gradients in the integrated parallel electric field (or quasi-potential). Furthermore, we compare the distribution of parallel electric fields along field lines with the reconnection rate. We find the reconnection rate is controlled by only the low-amplitude, zeroth and first-order trends in the parallel electric field, while the contribution from high amplitude parallel fluctuations, such as electron holes, is negligible. The results impact the determination of reconnection sites within models of 3D turbulent reconnection as well as the inference of reconnection rates from in situ spacecraft measurements. It is difficult through direct observation to isolate the locus of the reconnection parallel electric field amidst the large amplitude fluctuations. However, we demonstrate that a positive slope of the partial sum of the parallel electric field along the field line as a function of field line length indicates where reconnection is occurring along the field line.

  12. The Development of Drift Wave Turbulence in Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    McMurtrie, L.; Drake, J. F.; Swisdak, M. M.

    2013-12-01

    An important feature in collisionless magnetic reconnection is the development of sharp discontinuities along the separatrices bounding the Alfvenic outflow. The typical scale length of these features is ρs (the Larmor radius based on the sound speed) for guide field reconnection. Temperature gradients in the inflowing plasma (as might be found in the magnetopause) can lead to instabilities at these separatrices, specifically drift wave turbulence. We present standalone 2D and 3D PIC simulations of drift wave turbulence to investigate scaling properties and growth rates. Further investigations of the relative importance of drift wave turbulence in the development of reconnection will also be considered.

  13. Feasible voltage-tap based quench detection in a Ag/Bi-2212 coil enabled by fast 3D normal zone propagation

    SciTech Connect

    Shen, Tengming; Ye, Liyang; Li, Pei

    2016-07-01

    For this study, small insert solenoids have been built using a commercial Ag/Bi-2212 multifilamentary round wire, insulated with a new thin TiO2– polymer coating insulation (thickness in ~20 μm versus ~100 μm for a commonly used mullite braided sleeve insulation), and characterized in background magnetic field up to 14 T at 4.2 K to explore the high-field performance and quench detection of Bi-2212 magnets. The coil has no visible leakage and no electrical shorts after reaction, and it carries 280 A/mm-2 in a background field 14 T and generates an additional 1.7 T. A notable result is that, despite normal zones propagate slowly along the conductor, the hot spot temperature upon detection increases only from 40 K to 60 K when the resistive quench detection voltage threshold increases from 0.1 V to 1 V for all operating current density investigated, showing that quench detection using voltage taps is feasible for this coil. This is in a strong contrast to a coil we previously built to the same specifications but from wires insulated with the mullite braided sleeve insulation, for which the hot spot temperature upon detection increases from ~80 K to ~140 K while increasing from the detection voltage threshold from 0.1 V to 1 V, and thus for which quench detection using voltage taps presents significant risks, consistent with the common belief that the effectiveness of quench detection using voltage taps for superconducting magnets built using high temperature superconductors is seriously compromised by their slow normal zone propagation. This striking difference is ascribed to the fast transverse quench propagation enabled by thin insulation and improved thermal coupling between conductor turns. Finally, this work demonstrates that quench detection for high-temperature superconducting magnets highly depends on the design and construction of the coils such as insulation materials used and this dependence should be factored into the overall

  14. Feasible voltage-tap based quench detection in a Ag/Bi-2212 coil enabled by fast 3D normal zone propagation

    DOE PAGES

    Shen, Tengming; Ye, Liyang; Li, Pei

    2016-07-01

    For this study, small insert solenoids have been built using a commercial Ag/Bi-2212 multifilamentary round wire, insulated with a new thin TiO2– polymer coating insulation (thickness in ~20 μm versus ~100 μm for a commonly used mullite braided sleeve insulation), and characterized in background magnetic field up to 14 T at 4.2 K to explore the high-field performance and quench detection of Bi-2212 magnets. The coil has no visible leakage and no electrical shorts after reaction, and it carries 280 A/mm-2 in a background field 14 T and generates an additional 1.7 T. A notable result is that, despite normalmore » zones propagate slowly along the conductor, the hot spot temperature upon detection increases only from 40 K to 60 K when the resistive quench detection voltage threshold increases from 0.1 V to 1 V for all operating current density investigated, showing that quench detection using voltage taps is feasible for this coil. This is in a strong contrast to a coil we previously built to the same specifications but from wires insulated with the mullite braided sleeve insulation, for which the hot spot temperature upon detection increases from ~80 K to ~140 K while increasing from the detection voltage threshold from 0.1 V to 1 V, and thus for which quench detection using voltage taps presents significant risks, consistent with the common belief that the effectiveness of quench detection using voltage taps for superconducting magnets built using high temperature superconductors is seriously compromised by their slow normal zone propagation. This striking difference is ascribed to the fast transverse quench propagation enabled by thin insulation and improved thermal coupling between conductor turns. Finally, this work demonstrates that quench detection for high-temperature superconducting magnets highly depends on the design and construction of the coils such as insulation materials used and this dependence should be factored into the overall magnet design.« less

  15. Feasible voltage-tap based quench detection in a Ag/Bi-2212 coil enabled by fast 3D normal zone propagation

    NASA Astrophysics Data System (ADS)

    Shen, Tengming; Ye, Liyang; Li, Pei

    2016-08-01

    Small insert solenoids have been built using a commercial Ag/Bi-2212 multifilamentary round wire, insulated with a new thin TiO2-polymer coating insulation (thickness of ˜20 μm versus ˜100 μm for a commonly used mullite braided sleeve insulation), and characterized in a background magnetic field up to 14 T at 4.2 K to explore the high-field performance and quench detection of Bi-2212 magnets. The coil has no visible leakage and no electrical shorts after reaction, and it carries 280 A mm-2 in a background field of 14 T and generates an additional 1.7 T. A notable result is that, despite normal zones propagating slowly along the conductor, the hot spot temperature upon detection increases only from 40 K to 60 K when the resistive quench detection voltage threshold increases from 0.1 V to 1 V for all operating current density investigated, showing that quench detection using voltage taps is feasible for this coil. This is in strong contrast to a coil we have previously built to the same specifications but from wires insulated with mullite braided sleeve insulation, for which the hot spot temperature upon detection increases from ˜80 K to ˜140 K while increasing the detection voltage threshold from 0.1 V to 1 V, and thus for which quench detection using voltage taps presents significant risks, consistent with the common belief that the effectiveness of quench detection using voltage taps for superconducting magnets built using high-temperature superconductors is seriously compromised by their slow normal zone propagation. This striking difference is ascribed to the fast transverse quench propagation enabled by thin insulation and the improved thermal coupling between conductor turns. This work demonstrates that quench detection for high-temperature superconducting magnets highly depends on the design and construction of the coils such as the insulation materials used and this dependence should be factored into the overall magnet design.

  16. Multi-Scale Modeling of Magnetospheric Reconnection

    NASA Technical Reports Server (NTRS)

    Kuznetsova, M. M.; Hesse, M.; Rastatter, L.; Toth, G.; Dezeeuw, D.; Gomobosi, T.

    2007-01-01

    One of the major challenges in modeling the magnetospheric magnetic reconnection is to quantify the interaction between large-scale global magnetospheric dynamics and microphysical processes in diffusion regions near reconnection sites. There is still considerable debate as to what degree microphysical processes on kinetic scales affect the global evolution and how important it is to substitute numerical dissipation and/or ad hoc anomalous resistivity by a physically motivated model of dissipation. Comparative studies of magnetic reconnection in small scale geometries demonstrated that MHD simulations that included non-ideal processes in terms of a resistive term $\\eta J$ did not produce the fast reconnection rates observed in kinetic simulations. For a broad range of physical parameters in collisionless magnetospheric plasma, the primary mechanism controlling the dissipation in the vicinity of the reconnection site is non-gyrotropic effects with spatial scales comparable with the particle Larmor radius. We utilize the global MHD code BATSRUS and incorporate nongyrotropic effects in diffusion regions in terms of corrections to the induction equation. We developed an algorithm to search for magnetotail reconnection sites, specifically where the magnetic field components perpendicular to the local current direction approaches zero and form an X-type configuration. Spatial scales of the diffusion region and magnitude of the reconnection electric field are calculated selfconsistently using MHD plasma and field parameters in the vicinity of the reconnection site. The location of the reconnection sites is updated during the simulations. To clarify the role of nongyrotropic effects in diffusion region on the global magnetospheric dynamic we perform simulations with steady southward IMF driving of the magnetosphere. Ideal MHD simulations with magnetic reconnection supported by numerical resistivity produce steady configuration with almost stationary near-earth neutral

  17. Collisionless Reconnection in an Electron-Positron Plasma

    SciTech Connect

    Bessho, N.; Bhattacharjee, A.

    2005-12-09

    Electromagnetic particle-in-cell simulations of fast collisionless reconnection in a two-dimensional electron-positron plasma (without an equilibrium guide field) are presented. A generalized Ohm's law in which the Hall current cancels out exactly is given. It is suggested that the key to fast reconnection in this plasma is the localization caused by the off-diagonal components of the pressure tensors, which produce an effect analogous to a spatially localized resistivity.

  18. NUBEAM developments and 3d halo modeling

    NASA Astrophysics Data System (ADS)

    Gorelenkova, M. V.; Medley, S. S.; Kaye, S. M.

    2012-10-01

    Recent developments related to the 3D halo model in NUBEAM code are described. To have a reliable halo neutral source for diagnostic simulation, the TRANSP/NUBEAM code has been enhanced with full implementation of ADAS atomic physic ground state and excited state data for hydrogenic beams and mixed species plasma targets. The ADAS codes and database provide the density and temperature dependence of the atomic data, and the collective nature of the state excitation process. To be able to populate 3D halo output with sufficient statistical resolution, the capability to control the statistics of fast ion CX modeling and for thermal halo launch has been added to NUBEAM. The 3D halo neutral model is based on modification and extension of the ``beam in box'' aligned 3d Cartesian grid that includes the neutral beam itself, 3D fast neutral densities due to CX of partially slowed down fast ions in the beam halo region, 3D thermal neutral densities due to CX deposition and fast neutral recapture source. More details on the 3D halo simulation design will be presented.

  19. Forensic 3D scene reconstruction

    NASA Astrophysics Data System (ADS)

    Little, Charles Q.; Small, Daniel E.; Peters, Ralph R.; Rigdon, J. B.

    2000-05-01

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a fieldable prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  20. Forensic 3D Scene Reconstruction

    SciTech Connect

    LITTLE,CHARLES Q.; PETERS,RALPH R.; RIGDON,J. BRIAN; SMALL,DANIEL E.

    1999-10-12

    Traditionally law enforcement agencies have relied on basic measurement and imaging tools, such as tape measures and cameras, in recording a crime scene. A disadvantage of these methods is that they are slow and cumbersome. The development of a portable system that can rapidly record a crime scene with current camera imaging, 3D geometric surface maps, and contribute quantitative measurements such as accurate relative positioning of crime scene objects, would be an asset to law enforcement agents in collecting and recording significant forensic data. The purpose of this project is to develop a feasible prototype of a fast, accurate, 3D measurement and imaging system that would support law enforcement agents to quickly document and accurately record a crime scene.

  1. GPU-Accelerated Denoising in 3D (GD3D)

    SciTech Connect

    2013-10-01

    The raw computational power GPU Accelerators enables fast denoising of 3D MR images using bilateral filtering, anisotropic diffusion, and non-local means. This software addresses two facets of this promising application: what tuning is necessary to achieve optimal performance on a modern GPU? And what parameters yield the best denoising results in practice? To answer the first question, the software performs an autotuning step to empirically determine optimal memory blocking on the GPU. To answer the second, it performs a sweep of algorithm parameters to determine the combination that best reduces the mean squared error relative to a noiseless reference image.

  2. Three-dimensional outflow jets generated in collisionless magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Fujimoto, Keizo

    2016-10-01

    The present study proposes a new theoretical model generating three-dimensional (3-D) outflow jets in collisionless magnetic reconnection by means of a large-scale particle-in-cell simulation. The key mechanism is the formation of 3-D flux ropes arising in the turbulent electron current layer formed around the magnetic x line. The scale of the flux ropes along the current density is determined by the wavelength of an electron flow shear mode which is a macroscopic scale larger than the typical kinetic scales. The 3-D flux ropes are intermittently ejected from the current layer and regulates the outflow jets into three dimensions. The gross reconnection rate is sufficiently large, since reconnection takes place almost uniformly along the x line.

  3. The Fast Plasma Investigation on the Magnetospheric Multiscale Mission

    NASA Astrophysics Data System (ADS)

    Rager, A. C.; Pollock, C. J.; Avanov, L. A.; Barrie, A. C.; Burch, J. L.; Chandler, M. O.; Clark, G. B.; Coffey, V. N.; Dickson, C.; Dorelli, J.; Ergun, R.; Fuselier, S. A.; Gliese, U.; Giles, B. L.; Holland, M. P.; Jacques, A. D.; Kreisler, S.; Lavraud, B.; MacDonald, E.; Mauk, B.; Moore, T. E.; Mukai, T.; Nakamura, R.; Rosnack, T.; Saito, Y.; Salo, C.; Sauvaud, J. A.; Smith, D. L.; Smith, S. E.; Torbert, R. B.; Yokota, S.

    2015-12-01

    Launched in March 2015, the Fast Plasma Investigation (FPI) instrument suite on the Magnetospheric Multiscale Mission (MMS) is producing the highest time and spatial resolution 3D electron and ion particle distribution function measurements to date. During FPI science operations, the four spacecraft maintain a tetrahedral formation such that 3D measurements of the plasma and field gradients are enabled. This allows the spacecraft to better investigate reconnection and to distinguish between spatial and temporal structures. In the first three months, we expect to observe magnetic phenomena such as dipolarization fronts, the plasma sheet boundary layer, magnetopause crossings, ion dispersive signatures of from remote reconnection sites, and magnetic holes. This poster is intended to supplement the invited talk on FPI results by Pollock et al. by providing further detail of the instrumentation and calibration, as well as a sampling of early magnetospheric plasma observations in the evening-side magnetotail, dusk flank, and afternoon magnetopause.

  4. Three-dimensional geometry of magnetic reconnection induced by ballooning instability in a generalized Harris sheet

    NASA Astrophysics Data System (ADS)

    Zhu, Ping; Bhattacharjee, Amitava; Sangari, Arash; Wang, Zechen; Bonofiglo, Phillip

    2017-02-01

    We report for the first time the intrinsically three-dimensional (3D) geometry of the magnetic reconnection process induced by ballooning instability in a generalized Harris sheet. The spatial distribution and the structure of the quasi-separatrix layers, as well as their temporal emergence and evolution, indicate that the associated magnetic reconnection can only occur in a 3D geometry, which is irreducible to that of any two-dimensional reconnection process. Such a finding provides a new perspective to the long-standing controversy over the substorm onset problem and elucidates the combined roles of reconnection and ballooning instabilities. It also connects to the universal presence of 3D reconnection processes previously discovered in various natural and laboratory plasmas.

  5. AE3D

    SciTech Connect

    Spong, Donald A

    2016-06-20

    AE3D solves for the shear Alfven eigenmodes and eigenfrequencies in a torodal magnetic fusion confinement device. The configuration can be either 2D (e.g. tokamak, reversed field pinch) or 3D (e.g. stellarator, helical reversed field pinch, tokamak with ripple). The equations solved are based on a reduced MHD model and sound wave coupling effects are not currently included.

  6. On the value of the reconnection rate

    NASA Astrophysics Data System (ADS)

    Comisso, L.; Bhattacharjee, A.

    2016-12-01

    Numerical simulations have consistently shown that the reconnection rate in certain collisionless regimes can be fast, of the order of ABu$ , where A$ and u$ are the Alfvén speed and the reconnecting magnetic field upstream of the ion diffusion region. This particular value has been reported in myriad numerical simulations under disparate conditions. However, despite decades of research, the reasons underpinning this specific value remain mysterious. Here, we present an overview of this problem and discuss the conditions under which the `0.1 value' is attained. Furthermore, we explain why this problem should be interpreted in terms of the ion diffusion region length.

  7. Observed Aspects of Reconnection in Solar Eruptions

    NASA Technical Reports Server (NTRS)

    Moore, Ronald L.

    2010-01-01

    Signatures of reconnection in major CME (coronal mass ejection)/flare eruptions and in coronal X-ray jets are illustrated and interpreted. The signatures are magnetic field lines and their feet that brighten in flare emission. CME/flare eruptions are magnetic explosions in which: 1. The field that erupts is initially a closed arcade. 2. At eruption onset, most of the free magnetic energy to be released is not stored in field bracketing a current sheet, but in sheared field in the core of the arcade. 3. The sheared core field erupts by a process that from its start or soon after involves fast tether-cutting reconnection at an initially small current sheet low in the sheared core field. If the arcade has oppositely-directed field over it, the eruption process from its start or soon after also involves fast breakout reconnection at an initially small current sheet between the arcade and the overarching field. These aspects are shown by the small area of the bright field lines and foot-point flare ribbons in the onset of the eruption. 4. At either small current sheet, the fast reconnection progressively unleashes the erupting core field to erupt with progressively greater force. In turn, the erupting core field drives the current sheet to become progressively larger and to undergo progressively greater fast reconnection in the explosive phase of the eruption, and the flare arcade and ribbons grow to become comparable to the pre-eruption arcade in lateral extent. In coronal X-ray jets: 1. The magnetic energy released in the jet is built up by the emergence of a magnetic arcade into surrounding unipolar "open" field. 2. A simple jet is produced when a burst of reconnection occurs at the current sheet between the arcade and the open field. This produces a bright reconnection jet and a bright reconnection arcade that are both much smaller in diameter that the driving arcade. 3. A more complex jet is produced when the arcade has a sheared core field and undergoes an

  8. Optimal arrangements of fiber optic probes to enhance the spatial resolution in depth for 3D reflectance diffuse optical tomography with time-resolved measurements performed with fast-gated single-photon avalanche diodes

    NASA Astrophysics Data System (ADS)

    Puszka, Agathe; Di Sieno, Laura; Dalla Mora, Alberto; Pifferi, Antonio; Contini, Davide; Boso, Gianluca; Tosi, Alberto; Hervé, Lionel; Planat-Chrétien, Anne; Koenig, Anne; Dinten, Jean-Marc

    2014-02-01

    Fiber optic probes with a width limited to a few centimeters can enable diffuse optical tomography (DOT) in intern organs like the prostate or facilitate the measurements on extern organs like the breast or the brain. We have recently shown on 2D tomographic images that time-resolved measurements with a large dynamic range obtained with fast-gated single-photon avalanche diodes (SPADs) could push forward the imaged depth range in a diffusive medium at short source-detector separation compared with conventional non-gated approaches. In this work, we confirm these performances with the first 3D tomographic images reconstructed with such a setup and processed with the Mellin- Laplace transform. More precisely, we investigate the performance of hand-held probes with short interfiber distances in terms of spatial resolution and specifically demonstrate the interest of having a compact probe design featuring small source-detector separations. We compare the spatial resolution obtained with two probes having the same design but different scale factors, the first one featuring only interfiber distances of 15 mm and the second one, 10 mm. We evaluate experimentally the spatial resolution obtained with each probe on the setup with fast-gated SPADs for optical phantoms featuring two absorbing inclusions positioned at different depths and conclude on the potential of short source-detector separations for DOT.

  9. Interchange Reconnection and Coronal Hole Dynamics

    NASA Technical Reports Server (NTRS)

    Edmondson, J. K.; Antiochos, S. K.; DeVore, C. R.; Lynch, B. J.; Zurbuchen, T. H.

    2011-01-01

    We investigate the effect of magnetic reconnection between open and closed field, (often referred to as "interchange" reconnection), on the dynamics and topology of coronal hole boundaries. The most important and most prevalent 3D topology of the interchange process is that of a small-scale bipolar magnetic field interacting with a large-scale background field. We determine the evolution of such a magnetic topology by numerical solution of the fully 3D MHD equations in spherical coordinates. First, we calculate the evolution of a small-scale bipole that initially is completely inside an open field region and then is driven across a coronal hole boundary by photospheric motions. Next the reverse situation is calculated in which the bipole is initially inside the closed region and driven toward the coronal hole boundary. In both cases we find that the stress imparted by the photospheric motions results in deformation of the separatrix surface between the closed field of the bipole and the background field, leading to rapid current sheet formation and to efficient reconnection. When the bipole is inside the open field region, the reconnection is of the interchange type in that it exchanges open and closed field. We examine, in detail, the topology of the field as the bipole moves across the coronal hole boundary, and find that the field remains well-connected throughout this process. Our results imply that open flux cannot penetrate deeply into the closed field region below a helmet streamer and, hence, support the quasi-steady models in which open and closed flux remain topologically distinct. Our results also support the uniqueness hypothesis for open field regions as postulated by Antiochos et al. We discuss the implications of this work for coronal observations. Subject Headings: Sun: corona Sun: magnetic fields Sun: reconnection Sun: coronal hole

  10. Nonlinear regimes of forced magnetic reconnection

    SciTech Connect

    Vekstein, G.; Kusano, K.

    2015-09-15

    This letter presents a self-consistent description of nonlinear forced magnetic reconnection in Taylor's model of this process. If external boundary perturbation is strong enough, nonlinearity in the current sheet evolution becomes important before resistive effects come into play. This terminates the current sheet shrinking that takes place at the linear stage and brings about its nonlinear equilibrium with a finite thickness. Then, in theory, this equilibrium is destroyed by a finite plasma resistivity during the skin-time, and further reconnection proceeds in the Rutherford regime. However, realization of such a scenario is unlikely because of the plasmoid instability, which is fast enough to develop before the transition to the Rutherford phase occurs. The suggested analytical theory is entirely different from all previous studies and provides proper interpretation of the presently available numerical simulations of nonlinear forced magnetic reconnection.

  11. Formation of Plasmoid Chains in Magnetic Reconnection

    SciTech Connect

    Samtaney, R.; Loureiro, N. F.; Uzdensky, D. A.; Schekochihin, A. A.; Cowley, S. C.

    2009-09-09

    A detailed numerical study of magnetic reconnection in resistive MHD for very large, previously inaccessible, Lundquist numbers (104 ≤ S ≤ 108) is reported. Large-aspect-ratio Sweet-Parker current sheets are shown to be unstable to super-Alfvenically fast formation of plasmoid (magnetic-island) chains. The plasmoid number scales as S3/8 and the instability growth rate in the linear stage as S1/4, in agreement with the theory by Loureiro et al. [Phys. Plasmas 14, 100703 (2007)]. In the nonlinear regime, plasmoids continue to grow faster than they are ejected and completely disrupt the reconnection layer. These results suggest that high-Lundquist-number reconnection is inherently time-dependent and hence call for a substantial revision of the standard Sweet-Parker quasistationary picture for S>104.

  12. 3D holographic printer: fast printing approach.

    PubMed

    Morozov, Alexander V; Putilin, Andrey N; Kopenkin, Sergey S; Borodin, Yuriy P; Druzhin, Vladislav V; Dubynin, Sergey E; Dubinin, German B

    2014-02-10

    This article describes the general operation principles of devices for synthesized holographic images such as holographic printers. Special emphasis is placed on the printing speed. In addition, various methods to increase the printing process are described and compared.

  13. Theory and Simulations of Incomplete Reconnection During Sawteeth Due to Diamagnetic Effects

    NASA Astrophysics Data System (ADS)

    Beidler, Matthew Thomas

    Tokamaks use magnetic fields to confine plasmas to achieve fusion; they are the leading approach proposed for the widespread production of fusion energy. The sawtooth crash in tokamaks limits the core temperature, adversely impacts confinement, and seeds disruptions. Adequate knowledge of the physics governing the sawtooth crash and a predictive capability of its ramifications has been elusive, including an understanding of incomplete reconnection, i.e., why sawteeth often cease prematurely before processing all available magnetic flux. In this dissertation, we introduce a model for incomplete reconnection in sawtooth crashes resulting from increasing diamagnetic effects in the nonlinear phase of magnetic reconnection. Physically, the reconnection inflow self-consistently convects the high pressure core of a tokamak toward the q=1 rational surface, thereby increasing the pressure gradient at the reconnection site. If the pressure gradient at the rational surface becomes large enough due to the self-consistent evolution, incomplete reconnection will occur due to diamagnetic effects becoming large enough to suppress reconnection. Predictions of this model are borne out in large-scale proof-of-principle two-fluid simulations of reconnection in a 2D slab geometry and are also consistent with data from the Mega Ampere Spherical Tokamak (MAST). Additionally, we present simulations from the 3D extended-MHD code M3D-C1 used to study the sawtooth crash in a 3D toroidal geometry for resistive-MHD and two-fluid models. This is the first study in a 3D tokamak geometry to show that the inclusion of two-fluid physics in the model equations is essential for recovering timescales more closely in line with experimental results compared to resistive-MHD and contrast the dynamics in the two models. We use a novel approach to sample the data in the plane of reconnection perpendicular to the (m,n)=(1,1) mode to carefully assess the reconnection physics. Using local measures of

  14. Implications of RHESSI Flare Observations for Magnetic Reconnection Models

    NASA Technical Reports Server (NTRS)

    Holman, Gordon D.; Sui, Linhui; Dennis, Brian R.

    2004-01-01

    The Ramaty High Energy Solar Spectroscopic Imager (RHESSI) observations of the 2002 April 15 solar flare and related flares provide compelling evidence for the formation of a large-scale, reconnecting current sheet in at least some flares. We describe the observed evolution of the April 15 flare in terms of magnetic reconnection models. We argue that the flare most likely evolved through magnetic geometries associated with super-slow reconnection (early rise phase), fast reconnection (impulsive phase), and slow reconnection (gradual phase). We also provide evidence for X-ray brightenings within the evolving current sheet, possibly induced by the tearing mode instability. This work was supported in part by the RHESSI Program and NASA's Sun-Earth Connection Program. This work would not have been possible without the dedicated efforts of the entire RHESSI team.

  15. Small-Scale Magnetic Reconnection at Equatorial Coronal Hole Boundaries

    NASA Astrophysics Data System (ADS)

    Lamb, Derek; DeForest, C. E.

    2011-05-01

    Coronal holes have long been known to be the source of the fast solar wind at both high and low latitudes. The equatorial extensions of polar coronal holes have long been assumed to have substantial magnetic reconnection at their boundaries, because they rotate more rigidly than the underlying photosphere. However, evidence for this reconnection has been sparse until very recently. We present some evidence that reconnection due to the evolution of small-scale magnetic fields may be sufficient to drive coronal hole boundary evolution. We hypothesize that a bias in the direction of that reconnection is sufficient to give equatorial coronal holes their rigid rotation. We discuss the prospects for investigating this using FLUX, a reconnection-controlled coronal MHD simulation framework. This work was funded by the NASA SHP-GI program.

  16. Entropy conservation in simulations of magnetic reconnection

    SciTech Connect

    Birn, J.; Hesse, M.; Schindler, K.

    2006-09-15

    Entropy and mass conservation are investigated for the dynamic field evolution associated with fast magnetic reconnection, based on the 'Newton Challenge' problem [Birn et al., Geophys. Res. Lett. 32, L06105 (2005)]. In this problem, the formation of a thin current sheet and magnetic reconnection are initiated in a plane Harris-type current sheet by temporally limited, spatially varying, inflow of magnetic flux. Using resistive magnetohydrodynamic (MHD) and particle-in-cell (PIC) simulations, specifically the entropy and mass integrated along the magnetic flux tubes are compared between the simulations. In the MHD simulation these should be exactly conserved quantities, when slippage and Ohmic dissipation are negligible. It is shown that there is very good agreement between the conservation of these quantities in the two simulation approaches, despite the effects of dissipation, provided that the resistivity in the MHD simulation is strongly localized. This demonstrates that dissipation is highly localized in the PIC simulation also, and that heat flux across magnetic flux tubes has negligible effect as well, so that the entropy increase on a full flux tube remains small even during reconnection. The mass conservation also implies that the frozen-in flux condition of ideal MHD is a good integral approximation outside the reconnection site. This result lends support for using the entropy-conserving MHD approach not only before and after reconnection but even as a constraint connecting the two phases.

  17. Fluctuation dynamics in reconnecting current sheets

    NASA Astrophysics Data System (ADS)

    von Stechow, Adrian; Grulke, Olaf; Ji, Hantao; Yamada, Masaaki; Klinger, Thomas

    2015-11-01

    During magnetic reconnection, a highly localized current sheet forms at the boundary between opposed magnetic fields. Its steep perpendicular gradients and fast parallel drifts can give rise to a range of instabilities which can contribute to the overall reconnection dynamics. In two complementary laboratory reconnection experiments, MRX (PPPL, Princeton) and VINETA.II (IPP, Greifswald, Germany), magnetic fluctuations are observed within the current sheet. Despite the large differences in geometries (toroidal vs. linear), plasma parameters (high vs. low beta) and magnetic configuration (low vs. high magnetic guide field), similar broadband fluctuation characteristics are observed in both experiments. These are identified as Whistler-like fluctuations in the lower hybrid frequency range that propagate along the current sheet in the electron drift direction. They are intrinsic to the localized current sheet and largely independent of the slower reconnection dynamics. This contribution characterizes these magnetic fluctuations within the wide parameter range accessible by both experiments. Specifically, the fluctuation spectra and wave dispersion are characterized with respect to the magnetic topology and plasma parameters of the reconnecting current sheet.

  18. Current sheets, reconnection and adaptive mesh refinement

    NASA Astrophysics Data System (ADS)

    Marliani, Christiane

    1998-11-01

    Adaptive structured mesh refinement methods have proved to be an appropriate tool for the numerical study of a variety of problems where largely separated length scales are involved, e.g. [R. Grauer, C. Marliani, K. Germaschewski, PRL, 80, 4177, (1998)]. A typical example in plasma physics are the current sheets in magnetohydrodynamic flows. Their dynamics is investigated in the framework of incompressible MHD. We present simulations of the ideal and inviscid dynamics in two and three dimensions. In addition, we show numerical simulations for the resistive case in two dimensions. Specifically, we show simulations for the case of the reconnection.html>doubly periodic coalescence instability. At the onset of the reconnection process the kinetic energy rises and drops rapidly and afterwards settles into an oscillatory phase. The timescale of the magnetic reconnection process is not affected by these fast events but consistent with the Sweet-Parker model of stationary reconnection. Taking into account the electron inertia terms in the generalized Ohm's law the electron skin depth is introduced as an additional parameter. The modified equations allow for magnetic reconnection in the collisionless regime. Current density and vorticity concentrate in extremely long and thin sheets. Their dynamics becomes numerically accessible by means of adaptive mesh refinement.

  19. 3-D Seismic Interpretation

    NASA Astrophysics Data System (ADS)

    Moore, Gregory F.

    2009-05-01

    This volume is a brief introduction aimed at those who wish to gain a basic and relatively quick understanding of the interpretation of three-dimensional (3-D) seismic reflection data. The book is well written, clearly illustrated, and easy to follow. Enough elementary mathematics are presented for a basic understanding of seismic methods, but more complex mathematical derivations are avoided. References are listed for readers interested in more advanced explanations. After a brief introduction, the book logically begins with a succinct chapter on modern 3-D seismic data acquisition and processing. Standard 3-D acquisition methods are presented, and an appendix expands on more recent acquisition techniques, such as multiple-azimuth and wide-azimuth acquisition. Although this chapter covers the basics of standard time processing quite well, there is only a single sentence about prestack depth imaging, and anisotropic processing is not mentioned at all, even though both techniques are now becoming standard.

  20. Radiochromic 3D Detectors

    NASA Astrophysics Data System (ADS)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  1. Bootstrapping 3D fermions

    DOE PAGES

    Iliesiu, Luca; Kos, Filip; Poland, David; ...

    2016-03-17

    We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge CT. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  2. Bootstrapping 3D fermions

    SciTech Connect

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-17

    We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge CT. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  3. Dynamics of a reconnection-driven runaway ion tail in a reversed field pinch plasma

    NASA Astrophysics Data System (ADS)

    Anderson, Jay

    2015-11-01

    Non-collisional heating and energization of ions is a powerful process in reversed-field pinch (RFP) plasmas and in many astrophysical settings. Tearing activity in the RFP (including linearly and nonlinearly driven modes which span the plasma column) saturates through dynamo-like feedback on the current density profile, rapidly releasing magnetic energy and inducing a strong impulsive, parallel-to-B electric field as poloidal magnetic flux is converted to toroidal flux. The global reconnection leads to strong ion heating with a known anisotropy in temperature (T⊥ >T| |), suggestive of a perpendicular bulk heating mechanism. In the subset of strongest reconnection events, multiple mechanisms combine to create a most interesting ion distribution. Runaway of the reduced-friction naturally-heated ions generates an asymmetric ion tail with E|| >>E⊥ . The tail is reinforced by a confinement asymmetry where runaway ions approach the limit of classical cross-field transport despite magnetic stochasticity from the broad spectrum of tearing modes. Confinement is lower in other regions of the v⊥ /v| | plane and reduces to Rechester-Rosenbluth-like transport experienced by thermal particles. Experiments with neutral beam injection elegantly confirm the ion runaway process and fast ion confinement characteristics in MST. Neutral particle analyzers measure an unrestricted parallel acceleration of the fast test particle distribution during the reconnection event. The energy gain is larger for higher initial ion energy (reduced drag), and deceleration is observed with reversed electric field (counter-current injection) according to runaway dynamics and confirmed with Fokker-Planck modeling. Full orbit test particle tracing in the 3D time evolving electric and magnetic fields (from visco-resistive MHD simulations) corroborates the understanding of fast ion confinement. Work supported by by US DoE and NSF.

  4. Direct evidence for kinetic effects associated with solar wind reconnection.

    PubMed

    Xu, Xiaojun; Wang, Yi; Wei, Fengsi; Feng, Xueshang; Deng, Xiaohua; Ma, Yonghui; Zhou, Meng; Pang, Ye; Wong, Hon-Cheng

    2015-01-28

    Kinetic effects resulting from the two-fluid physics play a crucial role in the fast collisionless reconnection, which is a process to explosively release massive energy stored in magnetic fields in space and astrophysical plasmas. In-situ observations in the Earth's magnetosphere provide solid consistence with theoretical models on the point that kinetic effects are required in the collisionless reconnection. However, all the observations associated with solar wind reconnection have been analyzed in the context of magnetohydrodynamics (MHD) although a lot of solar wind reconnection exhausts have been reported. Because of the absence of kinetic effects and substantial heating, whether the reconnections are still ongoing when they are detected in the solar wind remains unknown. Here, by dual-spacecraft observations, we report a solar wind reconnection with clear Hall magnetic fields. Its corresponding Alfvenic electron outflow jet, derived from the decouple between ions and electrons, is identified, showing direct evidence for kinetic effects that dominate the collisionless reconnection. The turbulence associated with the exhaust is a kind of background solar wind turbulence, implying that the reconnection generated turbulence has not much developed.

  5. Plasma Compression in Magnetic Reconnection Regions in the Solar Corona

    NASA Astrophysics Data System (ADS)

    Provornikova, E.; Laming, J. M.; Lukin, V. S.

    2016-07-01

    It has been proposed that particles bouncing between magnetized flows converging in a reconnection region can be accelerated by the first-order Fermi mechanism. Analytical considerations of this mechanism have shown that the spectral index of accelerated particles is related to the total plasma compression within the reconnection region, similarly to the case of the diffusive shock acceleration mechanism. As a first step to investigate the efficiency of Fermi acceleration in reconnection regions in producing hard energy spectra of particles in the solar corona, we explore the degree of plasma compression that can be achieved at reconnection sites. In particular, we aim to determine the conditions for the strong compressions to form. Using a two-dimensional resistive MHD numerical model, we consider a set of magnetic field configurations where magnetic reconnection can occur, including a Harris current sheet, a force-free current sheet, and two merging flux ropes. Plasma parameters are taken to be characteristic of the solar corona. Numerical simulations show that strong plasma compressions (≥4) in the reconnection regions can form when the plasma heating due to reconnection is efficiently removed by fast thermal conduction or the radiative cooling process. The radiative cooling process that is negligible in the typical 1 MK corona can play an important role in the low corona/transition region. It is found that plasma compression is expected to be strongest in low-beta plasma β ˜ 0.01-0.07 at reconnection magnetic nulls.

  6. Fabrication of 3D Silicon Sensors

    SciTech Connect

    Kok, A.; Hansen, T.E.; Hansen, T.A.; Lietaer, N.; Summanwar, A.; Kenney, C.; Hasi, J.; Da Via, C.; Parker, S.I.; /Hawaii U.

    2012-06-06

    Silicon sensors with a three-dimensional (3-D) architecture, in which the n and p electrodes penetrate through the entire substrate, have many advantages over planar silicon sensors including radiation hardness, fast time response, active edge and dual readout capabilities. The fabrication of 3D sensors is however rather complex. In recent years, there have been worldwide activities on 3D fabrication. SINTEF in collaboration with Stanford Nanofabrication Facility have successfully fabricated the original (single sided double column type) 3D detectors in two prototype runs and the third run is now on-going. This paper reports the status of this fabrication work and the resulted yield. The work of other groups such as the development of double sided 3D detectors is also briefly reported.

  7. Venus in 3D

    NASA Technical Reports Server (NTRS)

    Plaut, Jeffrey J.

    1993-01-01

    Stereographic images of the surface of Venus which enable geologists to reconstruct the details of the planet's evolution are discussed. The 120-meter resolution of these 3D images make it possible to construct digital topographic maps from which precise measurements can be made of the heights, depths, slopes, and volumes of geologic structures.

  8. 3D photoacoustic imaging

    NASA Astrophysics Data System (ADS)

    Carson, Jeffrey J. L.; Roumeliotis, Michael; Chaudhary, Govind; Stodilka, Robert Z.; Anastasio, Mark A.

    2010-06-01

    Our group has concentrated on development of a 3D photoacoustic imaging system for biomedical imaging research. The technology employs a sparse parallel detection scheme and specialized reconstruction software to obtain 3D optical images using a single laser pulse. With the technology we have been able to capture 3D movies of translating point targets and rotating line targets. The current limitation of our 3D photoacoustic imaging approach is its inability ability to reconstruct complex objects in the field of view. This is primarily due to the relatively small number of projections used to reconstruct objects. However, in many photoacoustic imaging situations, only a few objects may be present in the field of view and these objects may have very high contrast compared to background. That is, the objects have sparse properties. Therefore, our work had two objectives: (i) to utilize mathematical tools to evaluate 3D photoacoustic imaging performance, and (ii) to test image reconstruction algorithms that prefer sparseness in the reconstructed images. Our approach was to utilize singular value decomposition techniques to study the imaging operator of the system and evaluate the complexity of objects that could potentially be reconstructed. We also compared the performance of two image reconstruction algorithms (algebraic reconstruction and l1-norm techniques) at reconstructing objects of increasing sparseness. We observed that for a 15-element detection scheme, the number of measureable singular vectors representative of the imaging operator was consistent with the demonstrated ability to reconstruct point and line targets in the field of view. We also observed that the l1-norm reconstruction technique, which is known to prefer sparseness in reconstructed images, was superior to the algebraic reconstruction technique. Based on these findings, we concluded (i) that singular value decomposition of the imaging operator provides valuable insight into the capabilities of

  9. Shocks produced by impulsively driven reconnection. [during solar flares or emergence of magnetic flux from photosphere into corona

    NASA Technical Reports Server (NTRS)

    Forbes, T. G.

    1988-01-01

    Shock waves produced by impulsively driven reconnection are investigated by carrying out numerical experiments using two-dimensional magnetohydrodynamics. The results of the numerical experiments imply that there are three different categories of shocks associated with impulsively driven reconnection: (1) fast-mode, blast waves which rapidly propagate away from the reconnection site; (2) slow-mode, Petschek shocks which are attached to the reconnection site; and (3) fast-mode, termination shocks which terminate the plasma jets flowing out from the reconnection site.

  10. A Rosetta Stone for in situ Observations of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Scudder, J. D.; Daughton, W. S.; Karimabadi, H.; Roytershteyn, V.

    2015-12-01

    Local conditions that constrain the physics of magnetic reconnection in space in 3D will be discussed, including those observable conditions presently used and new ones that enhance experimental closure. Three classes of tests will be discussed: i) proxies for unmeasurable theoretical properties II) observable properties satisfied by all layers that pass mass flux, including those of the reconnection layer, and (iii) observable kinetic tests that are increasingly peculiar to collisionless magnetic reconnection. A Rosetta Stone of state of the art observables will be proposed, including proxies for unmeasurable theoretical local rate of frozen flux violation and measures of the significance of frozen flux encountered. A suite of kinetic observables involving properties peculiar to electrons will also be demonstrated as promising litmus tests for certifying sites of collisionless magnetic reconnection.

  11. THEMIS Sees Magnetic Reconnection

    NASA Video Gallery

    THEMIS observations confirm for the first time that magnetic reconnection in the magnetotail triggers the onset of substorms. Substorms are the sudden violent eruptions of space weather that releas...

  12. Earth Reconnect -- July 2012

    NASA Video Gallery

    A visualization of Earth's magnetosphere on July 15-16, 2012, shows how constant magnetic reconnection caused by an arriving coronal mass ejection, or CME, from the sun disrupted the magnetosphere,...

  13. Model of Hall Reconnection

    SciTech Connect

    Malyshkin, Leonid M.

    2008-11-28

    The rate of quasistationary, two-dimensional magnetic reconnection is calculated in the framework of incompressible Hall magnetohydrodynamics, which includes the Hall and electron pressure terms in Ohm's law. The Hall-magnetohydrodynamics equations are solved in a local region across the reconnection electron layer, including only the upstream region and the layer center. In the case when the ion inertial length d{sub i} is larger than the Sweet-Parker reconnection layer thickness, the dimensionless reconnection rate is found to be independent of the electrical resistivity and equal to d{sub i}/L, where L is the scale length of the external magnetic field in the upstream region outside the electron layer and the ion layer thickness is found to be d{sub i}.

  14. Model of Hall reconnection.

    PubMed

    Malyshkin, Leonid M

    2008-11-28

    The rate of quasistationary, two-dimensional magnetic reconnection is calculated in the framework of incompressible Hall magnetohydrodynamics, which includes the Hall and electron pressure terms in Ohm's law. The Hall-magnetohydrodynamics equations are solved in a local region across the reconnection electron layer, including only the upstream region and the layer center. In the case when the ion inertial length di is larger than the Sweet-Parker reconnection layer thickness, the dimensionless reconnection rate is found to be independent of the electrical resistivity and equal to di/L, where L is the scale length of the external magnetic field in the upstream region outside the electron layer and the ion layer thickness is found to be di.

  15. Time Scales for Energy Release in Hall Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Huba, J. D.; Rudakov, L. I.

    2004-05-01

    We present a study of the time scales for energy release in 2D Hall magnetic reconnection. We use the NRL Hall MHD code VooDoo for this study. We consider a 2D reversed field current layer with a magnetic perturbation that initiates the reconnection process. We use boundary conditions that allow inflow and outflow (i.e., not periodic) and let the system reach a steady state. We find that the system goes through three stages: a relatively long current layer thinning process, a fast reconnection phase, and a final steady state phase. We define the time scale for energy release as the fast reconnection period: from onset to steady state. Preliminary results indicate that the time for energy release scales as the initial thickness of the current layer. We apply these results to the magnetotail and magnetopause. Research supported by NASA and ONR.

  16. Relativistic magnetic reconnection driven by intense lasers in preformed plasma

    NASA Astrophysics Data System (ADS)

    Campbell, Paul; Raymond, A.; McKelvey, A.; Maksimchuk, A.; Nees, J.; Yanovsky, V.; Krushelnick, K.; Dong, C. F.; Fox, W.; Zulick, C.; Wei, M. S.; Chen, H.; Chvykov, V.; Mileham, C.; Nilson, P. M.; Stoeckl, C.; Thomas, A. G. R.; Willingale, L.

    2016-10-01

    Experiments were performed with the OMEGA EP laser system focusing the two short pulse beams to high intensities on foil targets. Relativistic electrons drive fast reconnection self-generated magnetic fields. To investigate the effects of a preformed plasma on this relativistic magnetic reconnection, a long pulse UV beam was used to ablate the front surface of layered targets. The density and reconnection dynamics in the preformed copper or CH plasma were diagnosed with a 4 ω optical probe. A spherically bent crystal imaged characteristic copper Kα emission induced by fast electrons accelerated into the target in the reconnection diffusion region. This work was supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0002727.

  17. On the relationship between quadrupolar magnetic field and collisionless reconnection

    SciTech Connect

    Smets, R. Belmont, G.; Aunai, N.; Boniface, C.

    2014-06-15

    Using hybrid simulations, we investigate the onset of fast reconnection between two cylindrical magnetic shells initially close to each other. This initial state mimics the plasma structure in High Energy Density Plasmas induced by a laser-target interaction and the associated self-generated magnetic field. We clearly observe that the classical quadrupolar structure of the out-of-plane magnetic field appears prior to the reconnection onset. Furthermore, a parametric study reveals that, with a non-coplanar initial magnetic topology, the reconnection onset is delayed and possibly suppressed. The relation between the out-of-plane magnetic field and the out-of-plane electric field is discussed.

  18. High-Frequency Fluctuations During Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Jara-Almonte, J.; Ji, H.; Daughton, W. S.; Roytershteyn, V.; Yamada, M.; Yoo, J.; Fox, W. R., II

    2014-12-01

    During collisionless reconnection, the decoupling of the field from the plasma is known to occur only within the localized ion and electron diffusion regions, however predictions from fully kinetic simulations do not agree with experimental observations on the size of the electron diffusion region, implying differing reconnection mechanisms. Previous experiments, along with 2D and 3D simulations, have conclusively shown that this discrepancy cannot be explained by either classical collisions or Lower-Hybrid Drift Instability (Roytershtyn 2010, 2013). Due to computational limitations, however, previous simulations were constrained to have minimal scale separation between the electron skin depth and the Debye length (de/λD ~ 10), much smaller than in experiments (de/λD ~ 300). This lack of scale-separation can drastically modify the electrostatic microphysics within the diffusion layer. Using 3D, fully explicit kinetic simulations with a realistic and unprecedentedly large separation between the Debye length and the electron skin depth, de/λD = 64, we show that high frequency electrostatic waves (ω >> ωLH) can exist within the electron diffusion region. These waves generate small-scale turbulence within the electron diffusion region which acts to broaden the layer. Anomalous resistivity is also generated by the turbulence and significantly modifies the force balance. In addition to simulation results, initial experimental measurements of high frequency fluctuations (electrostatic and electromagnetic, f ≤ 1 GHz) in the Magnetic Reconnection Experiment (MRX) will be presented.

  19. Three-dimensional, Impulsive Magnetic Reconnection in a Laboratory Plasma

    SciTech Connect

    S Dorfman, et al

    2013-05-03

    Impulsive, local, 3-D reconnection is identified for the first time in a laboratory current sheet. The events observed in the Magnetic Reconnection Experiment (MRX) are characterized by large local gradients in the third direction and cannot be explained by 2-D models. Detailed measurements show that the ejection of flux rope structures from the current sheet plays a key role in these events. By contrast, even though electromagnetic fluctuations in the lower hybrid frequency range are also observed concurrently with the impulsive behavior, they are not the key physics responsible. A qualitative, 3-D, two-fluid model is proposed to explain the observations. The experimental results may be particularly applicable to space and astrophysical plasmas where impulsive reconnection occurs.

  20. Explosive Turbulent Magnetic Reconnection: A New Approach of MHD-Turbulent Simulation

    NASA Astrophysics Data System (ADS)

    Hoshino, Masahiro; Yokoi, Nobumitsu; Higashimori, Katsuaki

    2013-04-01

    Turbulent flows are often observed in association with magnetic reconnection in space and astrophysical plasmas, and it is often hypothesized that the turbulence can contribute to the fast magnetic reconnection through the enhancement of magnetic dissipation. In this presentation, we demonstrate that an explosive turbulent reconnection can happen by using a new turbulent MHD simulation, in which the evolution of the turbulent transport coefficients are self-consistently solved together with the standard MHD equations. In our model, the turbulent electromotive force defined by the correlation of turbulent fluctuations between v and B is added to the Ohm's law. We discuss that the level of turbulent can control the topology of reconnection, namely the transition from the Sweet-Parker reconnection to the Petscheck reconnection occurs when the level of fluctuations becomes of order of the ambient physical quantities, and show that the growth of the turbulent Petscheck reconnection becomes much faster than the conventional one.

  1. Numerical simulations of multiple X-line reconnection in the dayside magnetopause

    NASA Astrophysics Data System (ADS)

    Kondoh, K.

    2015-12-01

    We study about the magnetic reconnection evolutions in the dayside geomagnetopause using the MHD numerical simulations on the basis of the spontaneous fast magnetic reconnection model. In this spontaneous reconnection model, the diffusion region is localized and the magnetic reconnection drastically evolves by the positive feedback between the growths of the macroscopic plasma flow and the microscopic resistivity. The localized diffusion region eventually becomes longer in the directions of the reconnection outflow. Then, the secondary reconnection occurs to divide into the two diffusion regions before forming the Sweet-Parker type diffusion region. In this term, background sheath flow helps stretching of the diffusion region and causes the difference of the strength of the reconnection rate at the each x-line.

  2. Reconnection and interchange instability in the near magnetotail

    DOE PAGES

    Birn, Joachim; Liu, Yi -Hsin; Daughton, William; ...

    2015-07-16

    This paper provides insights into the possible coupling between reconnection and interchange/ballooning in the magnetotail related to substorms and flow bursts. The results presented are largely based on recent simulations of magnetotail dynamics, exploring onset and progression of reconnection. 2.5-dimensional particle-in-cell (PIC) simulations with different tail deformation demonstrate a clear boundary between stable and unstable cases depending on the amount of deformation, explored up to the real proton/electron mass ratio. The evolution prior to onset, as well as the evolution of stable cases, are governed by the conservation of integral flux tube entropy S as imposed in ideal MHD, maintainingmore » a monotonic increase with distance downtail. This suggests that ballooning instability in the tail should not be expected prior to the onset of tearing and reconnection. 3-D MHD simulations confirm this conclusion, showing no indication of ballooning prior to reconnection, if the initial state is ballooning stable. The simulation also shows that, after imposing resistivity necessary to initiate reconnection, the reconnection rate and energy release initially remain slow. However, when S becomes reduced from plasmoid ejection and lobe reconnection, forming a negative slope in S as a function of distance from Earth, the reconnection rate and energy release increase drastically. The latter condition has been shown to be necessary for ballooning/interchange instability, and the cross-tail structures that develop subsequently in the MHD simulation are consistent with such modes. The simulations support a concept in which tail activity is initiated by tearing instability but significantly enhanced by the interaction with ballooning/interchange enabled by plasmoid loss and lobe reconnection.« less

  3. Reconnection and interchange instability in the near magnetotail

    SciTech Connect

    Birn, Joachim; Liu, Yi -Hsin; Hesse, Michael

    2015-07-16

    This paper provides insights into the possible coupling between reconnection and interchange/ballooning in the magnetotail related to substorms and flow bursts. The results presented are largely based on recent simulations of magnetotail dynamics, exploring onset and progression of reconnection. 2.5-dimensional particle-in-cell (PIC) simulations with different tail deformation demonstrate a clear boundary between stable and unstable cases depending on the amount of deformation, explored up to the real proton/electron mass ratio. The evolution prior to onset, as well as the evolution of stable cases, are governed by the conservation of integral flux tube entropy S as imposed in ideal MHD, maintaining a monotonic increase with distance downtail. This suggests that ballooning instability in the tail should not be expected prior to the onset of tearing and reconnection. 3-D MHD simulations confirm this conclusion, showing no indication of ballooning prior to reconnection, if the initial state is ballooning stable. The simulation also shows that, after imposing resistivity necessary to initiate reconnection, the reconnection rate and energy release initially remain slow. However, when S becomes reduced from plasmoid ejection and lobe reconnection, forming a negative slope in S as a function of distance from Earth, the reconnection rate and energy release increase drastically. The latter condition has been shown to be necessary for ballooning/interchange instability, and the cross-tail structures that develop subsequently in the MHD simulation are consistent with such modes. The simulations support a concept in which tail activity is initiated by tearing instability but significantly enhanced by the interaction with ballooning/interchange enabled by plasmoid loss and lobe reconnection.

  4. Confinement and dynamics of neutral beam injected fast ions in the MST Reversed Field Pinch

    NASA Astrophysics Data System (ADS)

    Liu, D.; Almagri, F.; Anderson, J. K.; den Hartog, D. J.; Nornberg, M. D.; Sarff, J. S.; Waksman, J.; Fiksel, G.; Deichuli, P.; Davydenko, V. I.; Ivanov, A. A.; Polosatkin, S. V.; Stupishin, N.; Andre, R.; McCune, D.

    2010-11-01

    The new 1MW neutral beam injector (97% H, 3% D) on MST provides a good test-bed for study of fast ions in the RFP. Analysis of the D-D fusion neutron flux decay at beam turn-off reveals that the confinement time of the fast ions is at least 10 ms, ten-fold larger than the thermal conferment times for particles and energy in standard stochastic plasmas. Also, the fast ion confinement increases with magnetic field strength. Dependence of fast ion confinement on plasma parameters, beam energy, and injection direction will be characterized and compared with TRANSP simulations. In addition, an advanced neutral particle analyzer and a prototype of fast ion charge exchange spectroscopy are under construction to measure neutralized fast ions and induced Doppler-shifted Hα light, respectively, thereby resolving fast ion density and energy distribution. Initial measurements of fast-ion dynamics during magnetic reconnection events will be presented.

  5. Impact of Heavy Ions on Reconnection Rate and Dipolarization Fronts during Magnetotail Reconnection

    NASA Astrophysics Data System (ADS)

    Liang, H.; Ashour-Abdalla, M.; Lapenta, G.; Walker, R. J.

    2015-12-01

    Spacecraft observations show that near a magnetotail X-line, the concentration of oxygen (O+) ions varies greatly between storm-time and non-storm substorms. While O+ is a minor ion species during the non-storm substorms, it can become a major ion species during some storm-time substorms. It is important to understand how such a significant amount of O+ influences the onset of reconnection, the reconnection rate and the subsequent energy transfer at propagating dipolarization fronts (or reconnection jet fronts). In this work, we have studied the effects of O+ on the reconnection rate and DFs during magnetotail reconnection. We used a 2.5D implicit Particle-in-Cell simulation in a 2D Harris current sheet in the presence of H+ and O+ ions. We carried out a simulation with equal number densities of O+ and H+ (O+ Run) and compared the results with a simulation run using only H+ ions (H+ Run). We found that the reconnection rate in the O+ Run is much less than that in the H+ Run and identified two factors that contribute to this difference: (1) the O+ drag on the convective magnetic flux via an ambipolar electric field in O+ diffusion region; (2) the current sheet O+ inertia, which reduces the DF speed and delays the fast reconnection phase in the O+ Run. For factor (2) the O+ ions provide the main force contributions at the DFs and thereby determine the thickness of DFs provided the concentration of O+ is large enough. The velocity distribution functions of O+ have several peaks that result from ion reflection and acceleration near the DFs. These results illustrate some of the differences between the storm-time and non-storm substorms due to a significant concentration of heavy ions. They also are directly related to the expected observations by the Magnetospheric Multiscale (MMS) mission.

  6. Twin Peaks - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    The two hills in the distance, approximately one to two kilometers away, have been dubbed the 'Twin Peaks' and are of great interest to Pathfinder scientists as objects of future study. 3D glasses are necessary to identify surface detail. The white areas on the left hill, called the 'Ski Run' by scientists, may have been formed by hydrologic processes.

    The IMP is a stereo imaging system with color capability provided by 24 selectable filters -- twelve filters per 'eye.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  7. 3D and beyond

    NASA Astrophysics Data System (ADS)

    Fung, Y. C.

    1995-05-01

    This conference on physiology and function covers a wide range of subjects, including the vasculature and blood flow, the flow of gas, water, and blood in the lung, the neurological structure and function, the modeling, and the motion and mechanics of organs. Many technologies are discussed. I believe that the list would include a robotic photographer, to hold the optical equipment in a precisely controlled way to obtain the images for the user. Why are 3D images needed? They are to achieve certain objectives through measurements of some objects. For example, in order to improve performance in sports or beauty of a person, we measure the form, dimensions, appearance, and movements.

  8. 3D Audio System

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Ames Research Center research into virtual reality led to the development of the Convolvotron, a high speed digital audio processing system that delivers three-dimensional sound over headphones. It consists of a two-card set designed for use with a personal computer. The Convolvotron's primary application is presentation of 3D audio signals over headphones. Four independent sound sources are filtered with large time-varying filters that compensate for motion. The perceived location of the sound remains constant. Possible applications are in air traffic control towers or airplane cockpits, hearing and perception research and virtual reality development.

  9. 3D Surgical Simulation

    PubMed Central

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  10. Martian terrain - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    An area of rocky terrain near the landing site of the Sagan Memorial Station can be seen in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. This image is part of a 3D 'monster' panorama of the area surrounding the landing site.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  11. 3D-printed bioanalytical devices

    NASA Astrophysics Data System (ADS)

    Bishop, Gregory W.; Satterwhite-Warden, Jennifer E.; Kadimisetty, Karteek; Rusling, James F.

    2016-07-01

    While 3D printing technologies first appeared in the 1980s, prohibitive costs, limited materials, and the relatively small number of commercially available printers confined applications mainly to prototyping for manufacturing purposes. As technologies, printer cost, materials, and accessibility continue to improve, 3D printing has found widespread implementation in research and development in many disciplines due to ease-of-use and relatively fast design-to-object workflow. Several 3D printing techniques have been used to prepare devices such as milli- and microfluidic flow cells for analyses of cells and biomolecules as well as interfaces that enable bioanalytical measurements using cellphones. This review focuses on preparation and applications of 3D-printed bioanalytical devices.

  12. A new magnetic reconnection paradigm: Stochastic plasmoid chains

    NASA Astrophysics Data System (ADS)

    Loureiro, Nuno

    2015-11-01

    Recent analytical and numerical research in magnetic reconnection has converged on the notion that reconnection sites (current sheets) are unstable to the formation of multiple magnetic islands (plasmoids), provided that the system is sufficiently large (or, in other words, that the Lundquist number of the plasma is high). Nonlinearly, plasmoids come to define the reconnection geometry. Their nonlinear dynamics is rather complex and best thought of as new form of turbulence whose properties are determined by continuous plasmoid formation and their subsequent ejection from the sheet, as well as the interaction (coalescence) between plasmoids of different sizes. The existence of these stochastic plasmoid chains has powerful implications for several aspects of the reconnection process, from determining the reconnection rate to the details and efficiency of the energy conversion and dissipation. In addition, the plasmoid instability may also directly bear on the little understood problem of the reconnection trigger, or onset, i.e., the abrupt transition from a slow stage of energy accumulation to a fast (explosive) stage of energy release. This talk will first provide a brief overview of these recent developments in the reconnection field. I will then discuss recent work addressing the onset problem in the context of a forming current sheet which becomes progressively more unstable to the plasmoid instability. Work partially supported by Fundação para a Ciência e Tecnologia via Grants UID/FIS/50010/2013 and IF/00530/2013.

  13. Three-Dimensional Turbulent Reconnection Induced by the Plasmoid Instability

    NASA Astrophysics Data System (ADS)

    Bhattacharjee, A.; Huang, Y. M.

    2014-12-01

    It has been established that the Sweet-Parker current layer in high-Lundquist-number reconnection is unstable to the super-Alfvenic plasmoid instability. Past two-dimensional magnetohydrodynamic simulations have demonstrated that the plasmoid instability leads to a new regime in which the Sweet-Parker current layer evolves into a chain of plasmoids connected by secondary current sheets and the averaged reconnection rate becomes nearly independent of the Lundquist number. In a three-dimensional configuration with a guide field, the additional degree of freedom allows plasmoid instabilities to grow at oblique angles [S. Baalrud et al. Phys. Plasmas 19, 022101 (2012)] and develop the complex dynamics of flux ropes which overlap, cause field-line stochasticization, and self-generate a turbulent state. Three-dimensional simulations in the high-Lundquist-number regime show the formation of cigar-shaped eddies elongated in the direction of the local magnetic field, which is a signature of anisotropic MHD turbulence. Furthermore, the energy fluctuation spectra are found to satisfy power laws in the inertial range. The averaged 3D reconnection rate in the self-generated turbulent state is of the order of a hundredth of the characteristic Alfven speed, which is an order of magnitude lower than the reconnection rate reported in recent studies of externally driven 3D turbulent reconnection. The physical reasons for these differences will be discussed.

  14. Gyrotropy During Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Swisdak, M.

    2015-12-01

    Gyrotropic particle distributions -- those that can be characterized completely by temperatures meausred parallel and perpendicular to the local magnetic field -- are the norm in many plasmas. However, near locations where magnetic topology suddenly changes, e.g., where magnetic reconnection occurs, gyrotropy can be expected to be violated. If these departures from gyrotropy are quantifiable they are useful as probes since magnetic topological changes are, in some sense, non-local while gyrotropy can be measured locally. I will discuss previously proposed measures of gyrotropy, give examples of cases where they give unphysical results, and propose a new measure. By applying this measure to particle-in-cell simulations of reconnection I will show that it does an excellent job of localizing reconnection sites. I will also show how gyrotropy can be quickly calculated in any case where the full pressure tensor is available. This has obvious applications to the interpretation of MMS data.

  15. Particle Acceleration Due to Coronal Non-null Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Threlfall, James; Neukirch, Thomas; Parnell, Clare Elizabeth

    2017-03-01

    Various topological features, for example magnetic null points and separators, have been inferred as likely sites of magnetic reconnection and particle acceleration in the solar atmosphere. In fact, magnetic reconnection is not constrained to solely take place at or near such topological features and may also take place in the absence of such features. Studies of particle acceleration using non-topological reconnection experiments embedded in the solar atmosphere are uncommon. We aim to investigate and characterise particle behaviour in a model of magnetic reconnection which causes an arcade of solar coronal magnetic field to twist and form an erupting flux rope, crucially in the absence of any common topological features where reconnection is often thought to occur. We use a numerical scheme that evolves the gyro-averaged orbit equations of single electrons and protons in time and space, and simulate the gyromotion of particles in a fully analytical global field model. We observe and discuss how the magnetic and electric fields of the model and the initial conditions of each orbit may lead to acceleration of protons and electrons up to 2 MeV in energy (depending on model parameters). We describe the morphology of time-dependent acceleration and impact sites for each particle species and compare our findings to those recovered by topologically based studies of three-dimensional (3D) reconnection and particle acceleration. We also broadly compare aspects of our findings to general observational features typically seen during two-ribbon flare events.

  16. Imaging Observations of Magnetic Reconnection in a Solar Eruptive Flare

    NASA Astrophysics Data System (ADS)

    Li, Y.; Sun, X.; Ding, M. D.; Qiu, J.; Priest, E. R.

    2017-02-01

    Solar flares are among the most energetic events in the solar atmosphere. It is widely accepted that flares are powered by magnetic reconnection in the corona. An eruptive flare is usually accompanied by a coronal mass ejection, both of which are probably driven by the eruption of a magnetic flux rope (MFR). Here we report an eruptive flare on 2016 March 23 observed by the Atmospheric Imaging Assembly on board the Solar Dynamics Observatory. The extreme-ultraviolet imaging observations exhibit the clear rise and eruption of an MFR. In particular, the observations reveal solid evidence of magnetic reconnection from both the corona and chromosphere during the flare. Moreover, weak reconnection is observed before the start of the flare. We find that the preflare weak reconnection is of tether-cutting type and helps the MFR to rise slowly. Induced by a further rise of the MFR, strong reconnection occurs in the rise phases of the flare, which is temporally related to the MFR eruption. We also find that the magnetic reconnection is more of 3D-type in the early phase, as manifested in a strong-to-weak shear transition in flare loops, and becomes more 2D-like in the later phase, as shown by the apparent rising motion of an arcade of flare loops.

  17. 3D field harmonics

    SciTech Connect

    Caspi, S.; Helm, M.; Laslett, L.J.

    1991-03-30

    We have developed an harmonic representation for the three dimensional field components within the windings of accelerator magnets. The form by which the field is presented is suitable for interfacing with other codes that make use of the 3D field components (particle tracking and stability). The field components can be calculated with high precision and reduced cup time at any location (r,{theta},z) inside the magnet bore. The same conductor geometry which is used to simulate line currents is also used in CAD with modifications more readily available. It is our hope that the format used here for magnetic fields can be used not only as a means of delivering fields but also as a way by which beam dynamics can suggest correction to the conductor geometry. 5 refs., 70 figs.

  18. Forced magnetic reconnection

    SciTech Connect

    Hahm, T.S.; Kulsrud, R.M.

    1984-11-01

    By studying a simple model problem, we examine the time evolution of magnetic field islands which are induced by perturbing the boundary surrounding an incompressible plasma with a resonant surface inside. We find that for sufficiently small boundary perturbations, the reconnection and island formation process occurs on the tearing mode time scale defined by Furth, Killeen, and Rosenbluth. For larger perturbations the time scale is that defined by Rutherford. The resulting asymptotic equilibrium is such that surface currents in the resonant region vanish. A detailed analytical picture of this reconnection process is presented.

  19. Anisotropic Electron Tail Generation during Tearing Mode Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    DuBois, Ami M.; Almagri, Abdulgader F.; Anderson, Jay K.; Den Hartog, Daniel J.; Lee, John David; Sarff, John S.

    2017-02-01

    The first experimental evidence of anisotropic electron energization during magnetic reconnection that favors a direction perpendicular to the guide magnetic field in a toroidal, magnetically confined plasma is reported in this Letter. Magnetic reconnection plays an important role in particle heating, energization, and transport in space and laboratory plasmas. In toroidal devices like the Madison Symmetric Torus, discrete magnetic reconnection events release large amounts of energy from the equilibrium magnetic field. Fast x-ray measurements imply a non-Maxwellian, anisotropic energetic electron tail is formed at the time of reconnection. The tail is well described by a power-law energy dependence. The expected bremsstrahlung from an electron distribution with an anisotropic energetic tail (v⊥>v∥ ) spatially localized in the core region is consistent with x-ray emission measurements. A turbulent process related to tearing fluctuations is the most likely cause for the energetic electron tail formation.

  20. Integrating Kinetic Effects into Global Models for Reconnection

    NASA Technical Reports Server (NTRS)

    Antiochos, S. K.

    2012-01-01

    Magnetic reconnection is the most striking example of how the coupling between global and kinetic scales can lead to fast energy release. Explosive solar activity, such as coronal mass ejections and flares for example, is widely believed to be due to the release of magnetic energy stored on global scales by magnetic reconnection operating on kinetic scales. Understanding how processes couple across spatial scales is one of the most difficult challenges in all of physics, and is undoubtedly the main obstacle to developing predictive models for the Sun's activity. Consequently, the NASA Living With a Star Program selected a Focused Science Team to attack the problem of cross-scale coupling in reconnection. In this talk I will present some of the results of the Team and review our latest theories and methods for modeling the global-local coupling in solar reconnection.

  1. MRS3D: 3D Spherical Wavelet Transform on the Sphere

    NASA Astrophysics Data System (ADS)

    Lanusse, F.; Rassat, A.; Starck, J.-L.

    2011-12-01

    Future cosmological surveys will provide 3D large scale structure maps with large sky coverage, for which a 3D Spherical Fourier-Bessel (SFB) analysis is natural. Wavelets are particularly well-suited to the analysis and denoising of cosmological data, but a spherical 3D isotropic wavelet transform does not currently exist to analyse spherical 3D data. We present a new fast Discrete Spherical Fourier-Bessel Transform (DSFBT) based on both a discrete Bessel Transform and the HEALPIX angular pixelisation scheme. We tested the 3D wavelet transform and as a toy-application, applied a denoising algorithm in wavelet space to the Virgo large box cosmological simulations and found we can successfully remove noise without much loss to the large scale structure. The new spherical 3D isotropic wavelet transform, called MRS3D, is ideally suited to analysing and denoising future 3D spherical cosmological surveys; it uses a novel discrete spherical Fourier-Bessel Transform. MRS3D is based on two packages, IDL and Healpix and can be used only if these two packages have been installed.

  2. Massively parallel implementation of 3D-RISM calculation with volumetric 3D-FFT.

    PubMed

    Maruyama, Yutaka; Yoshida, Norio; Tadano, Hiroto; Takahashi, Daisuke; Sato, Mitsuhisa; Hirata, Fumio

    2014-07-05

    A new three-dimensional reference interaction site model (3D-RISM) program for massively parallel machines combined with the volumetric 3D fast Fourier transform (3D-FFT) was developed, and tested on the RIKEN K supercomputer. The ordinary parallel 3D-RISM program has a limitation on the number of parallelizations because of the limitations of the slab-type 3D-FFT. The volumetric 3D-FFT relieves this limitation drastically. We tested the 3D-RISM calculation on the large and fine calculation cell (2048(3) grid points) on 16,384 nodes, each having eight CPU cores. The new 3D-RISM program achieved excellent scalability to the parallelization, running on the RIKEN K supercomputer. As a benchmark application, we employed the program, combined with molecular dynamics simulation, to analyze the oligomerization process of chymotrypsin Inhibitor 2 mutant. The results demonstrate that the massive parallel 3D-RISM program is effective to analyze the hydration properties of the large biomolecular systems.

  3. 'Diamond' in 3-D

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This 3-D, microscopic imager mosaic of a target area on a rock called 'Diamond Jenness' was taken after NASA's Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time.

    Opportunity has bored nearly a dozen holes into the inner walls of 'Endurance Crater.' On sols 177 and 178 (July 23 and July 24, 2004), the rover worked double-duty on Diamond Jenness. Surface debris and the bumpy shape of the rock resulted in a shallow and irregular hole, only about 2 millimeters (0.08 inch) deep. The final depth was not enough to remove all the bumps and leave a neat hole with a smooth floor. This extremely shallow depression was then examined by the rover's alpha particle X-ray spectrometer.

    On Sol 178, Opportunity's 'robotic rodent' dined on Diamond Jenness once again, grinding almost an additional 5 millimeters (about 0.2 inch). The rover then applied its Moessbauer spectrometer to the deepened hole. This double dose of Diamond Jenness enabled the science team to examine the rock at varying layers. Results from those grindings are currently being analyzed.

    The image mosaic is about 6 centimeters (2.4 inches) across.

  4. Prominent rocks - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Many prominent rocks near the Sagan Memorial Station are featured in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. Wedge is at lower left; Shark, Half-Dome, and Pumpkin are at center. Flat Top, about four inches high, is at lower right. The horizon in the distance is one to two kilometers away.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  5. Scalable Multi-Platform Distribution of Spatial 3d Contents

    NASA Astrophysics Data System (ADS)

    Klimke, J.; Hagedorn, B.; Döllner, J.

    2013-09-01

    Virtual 3D city models provide powerful user interfaces for communication of 2D and 3D geoinformation. Providing high quality visualization of massive 3D geoinformation in a scalable, fast, and cost efficient manner is still a challenging task. Especially for mobile and web-based system environments, software and hardware configurations of target systems differ significantly. This makes it hard to provide fast, visually appealing renderings of 3D data throughout a variety of platforms and devices. Current mobile or web-based solutions for 3D visualization usually require raw 3D scene data such as triangle meshes together with textures delivered from server to client, what makes them strongly limited in terms of size and complexity of the models they can handle. In this paper, we introduce a new approach for provisioning of massive, virtual 3D city models on different platforms namely web browsers, smartphones or tablets, by means of an interactive map assembled from artificial oblique image tiles. The key concept is to synthesize such images of a virtual 3D city model by a 3D rendering service in a preprocessing step. This service encapsulates model handling and 3D rendering techniques for high quality visualization of massive 3D models. By generating image tiles using this service, the 3D rendering process is shifted from the client side, which provides major advantages: (a) The complexity of the 3D city model data is decoupled from data transfer complexity (b) the implementation of client applications is simplified significantly as 3D rendering is encapsulated on server side (c) 3D city models can be easily deployed for and used by a large number of concurrent users, leading to a high degree of scalability of the overall approach. All core 3D rendering techniques are performed on a dedicated 3D rendering server, and thin-client applications can be compactly implemented for various devices and platforms.

  6. TURBULENT GENERAL MAGNETIC RECONNECTION

    SciTech Connect

    Eyink, G. L.

    2015-07-10

    Plasma flows with a magnetohydrodynamic (MHD)-like turbulent inertial range, such as the solar wind, require a generalization of general magnetic reconnection (GMR) theory. We introduce the slip velocity source vector per unit arclength of field line, the ratio of the curl of the non-ideal electric field in the generalized Ohm’s Law and magnetic field strength. It diverges at magnetic nulls, unifying GMR with null-point reconnection. Only under restrictive assumptions is the slip velocity related to the gradient of quasi-potential (which is the integral of parallel electric field along magnetic field lines). In a turbulent inertial range, the non-ideal field becomes tiny while its curl is large, so that line slippage occurs even while ideal MHD becomes accurate. The resolution is that ideal MHD is valid for a turbulent inertial range only in a weak sense that does not imply magnetic line freezing. The notion of weak solution is explained in terms of renormalization group (RG) type theory. The weak validity of the ideal Ohm’s law in the inertial range is shown via rigorous estimates of the terms in the generalized Ohm’s Law. All non-ideal terms are irrelevant in the RG sense and large-scale reconnection is thus governed solely by ideal dynamics. We discuss the implications for heliospheric reconnection, in particular for deviations from the Parker spiral model. Solar wind observations show that reconnection in a turbulence-broadened heliospheric current sheet, which is consistent with Lazarian–Vishniac theory, leads to slip velocities that cause field lines to lag relative to the spiral model.

  7. High power heating of magnetic reconnection in merging tokamak experiments

    SciTech Connect

    Ono, Y.; Tanabe, H.; Gi, K.; Watanabe, T.; Ii, T.; Yamada, T.; Gryaznevich, M.; Scannell, R.; Conway, N.; Crowley, B.; Michael, C.

    2015-05-15

    Significant ion/electron heating of magnetic reconnection up to 1.2 keV was documented in two spherical tokamak plasma merging experiment on MAST with the significantly large Reynolds number R∼10{sup 5}. Measured 1D/2D contours of ion and electron temperatures reveal clearly energy-conversion mechanisms of magnetic reconnection: huge outflow heating of ions in the downstream and localized heating of electrons at the X-point. Ions are accelerated up to the order of poloidal Alfven speed in the reconnection outflow region and are thermalized by fast shock-like density pileups formed in the downstreams, in agreement with recent solar satellite observations and PIC simulation results. The magnetic reconnection efficiently converts the reconnecting (poloidal) magnetic energy mostly into ion thermal energy through the outflow, causing the reconnection heating energy proportional to square of the reconnecting (poloidal) magnetic field B{sub rec}{sup 2}  ∼  B{sub p}{sup 2}. The guide toroidal field B{sub t} does not affect the bulk heating of ions and electrons, probably because the reconnection/outflow speeds are determined mostly by the external driven inflow by the help of another fast reconnection mechanism: intermittent sheet ejection. The localized electron heating at the X-point increases sharply with the guide toroidal field B{sub t}, probably because the toroidal field increases electron confinement and acceleration length along the X-line. 2D measurements of magnetic field and temperatures in the TS-3 tokamak merging experiment also reveal the detailed reconnection heating mechanisms mentioned above. The high-power heating of tokamak merging is useful not only for laboratory study of reconnection but also for economical startup and heating of tokamak plasmas. The MAST/TS-3 tokamak merging with B{sub p} > 0.4 T will enables us to heat the plasma to the alpha heating regime: T{sub i} > 5 keV without using any additional heating facility.

  8. Flare Particle Escape in 3D Solar Eruptive Events

    NASA Astrophysics Data System (ADS)

    Antiochos, Spiro K.; Masson, Sophie; DeVore, C. R.

    2015-04-01

    Among the most important, but least understood forms of space weather are the so-called Impulsive Solar Energetic Particle (SEP) events, which can be especially hazardous to deep-space astronauts. These energetic particles are generally believed to be produced by the flare reconnection that is the primary driver of solar eruptive events (SEE). A key point is that in the standard model of SEEs, the particles should remain trapped in the coronal flare loops and in the ejected plasmoid, the CME. However, flare-accelerated particles frequently reach the Earth long before the CME does. In previous 2.5D calculations we showed how the external reconnection that is an essential element of the breakout model for CME initiation could lead to the escape of flare-accelerated particles. The problem, however, is that in 2.5D this reconnection also tends to destroy the plasmoid, which disagrees with the observation that SEP events are often associated with well-defined plasmoids at 1 AU known as “magnetic clouds”. Consequently, we have extended our model to a fully 3D topology that includes a multi-polar coronal field suitable for a breakout SEE near a coronal hole region. We performed high-resolution 3D MHD numerical simulations with the Adaptively Refined MHD Solver (ARMS). Our results demonstrate that the model allows for the effective escape of energetic particles from deep within an ejecting well-defined plasmoid. We show how the complex interactions between the flare and breakout reconnection reproduce all the main observational features of SEEs and SEPs. We discuss the implications of our calculations for the upcoming Solar Orbiter and Solar Probe Plus missions, which will measure SEEs and SEPs near the Sun, thereby, mitigating propagation effects.This research was supported, in part, by the NASA SR&T and TR&T Programs.

  9. Streaming energetic electrons in reconnection events

    NASA Astrophysics Data System (ADS)

    Bieber, John W.

    Energetic electrons can be used to probe the large-scale topology of magnetic fields in Earth's magnetotail. In the plasma sheet region near the tail's midplane, these particles normally exhibit the trapped or isotropic angular distributions characteristic of closed magnetic field lines, but brief intervals of intense tailward streaming, indicative of open field lines, are occasionally observed. Such streaming events occur preferentially near the time of substorm onset as the observing spacecraft exits the thinning plasma sheet, and they are usually preceded by a 5-10 minute interval of fast tailward plasma flow and southward magnetic field. These correlated phenomena have been interpreted as evidence for magnetic reconnection at a transient magnetic X-line located ˜15 RE tailward of Earth. Recent studies of energetic electron streaming events report novel reconnection-related phenomena, including heating of plasma electrons, bump-in-tail electron velocity distributions, and possible rotational and tangential magnetic discontinuities.

  10. Streaming energetic electrons in reconnection events

    NASA Astrophysics Data System (ADS)

    Bieber, J. W.

    Energetic electrons can be used to probe the large-scale topology of magnetic fields in earth's magnetotail. In the plasma sheet region near the tail's midplane, these particles normally exhibit the trapped or isotropic angular distributions characteristic of closed magnetic field lines, but brief intervals of intense tailward streaming, indicative of open field lines, are occasionally observed. Such streaming events occur preferentially near the time of substorm onset as the observing spacecraft exits the thinning plasma sheet, and they are usually preceded by a 5-10 minute interval of fast tailward plasma flow and southward magnetic field. These correlated phenomena have been interpreted as evidence for magnetic reconnection at a transient magnetic X-line located at 15 earth radii tailward of earth. Recent studies of energetic electron streaming events report novel reconnection-related phenomena, including heating of plasma electrons, bump-in-tail electron velocity distributions, and possible rotational and tangential magnetic discontinuities.

  11. Crustal Deformation Analysis Using a 3D FE High-fidelity Model with a Fast Computation Method and Its Application to Inversion Analysis of Fault Slip in the 2011 Tohoku Earthquake

    NASA Astrophysics Data System (ADS)

    Agata, R.; Ichimura, T.; Hori, T.; Hirahara, K.; Hori, M.

    2012-12-01

    Crustal deformation analysis is important in order to understand the interplate coupling and coseismic fault slips. To perform it more accurately, we need a high-fidelity crustal structure model. However, in spite of accumulated crustal data, models with simplified flat shapes or relatively low resolution have been used, because the computation cost using high-fidelity models with a large degree-of-freedom (DOF) could be significantly high. Especially, estimation of the interplate coupling and coseismic fault slip requires the calculation of Green's function (the response displacement due to unit fault slip). To execute this computation in a realistic time, we need to reduce the computation cost. The objectives of our research is following: (1)To develop a method to generate 3D Finite Element (FE) models which represent heterogeneous crustal layers with the complex shape of crustal structure; (2)To develop a fast FE analysis method to perform crustal deformation analysis many times using single computation node, supposing the use of a small-scale computation environment. We developed an automatic FE model generation method using background grids with high quality meshes in a large area by extending the method of (Ichimura et al, 2009). We used Finite Element Method (FEM) because it has an advantage in representing the shape. Hybrid meshes consisting of tetrahedral and voxel elements are generated; the former is used when the interface surfaces and the grids intersect so that the shape of the crust is represented well, while the latter is used in the homogeneous areas. Also, we developed a method for crustal deformation analysis due to fault slip, which solves the FEM equation Ku=f assuming that the crust is an elastic body. To compute it fast, firstly we solved the problem by CG method with a simple preconditioning, parallelizing it by OpenMP. However, this computation took a long time, so we improved the method by introducing Multigrid Method (Saam, 2003) to the

  12. Impedance mammograph 3D phantom studies.

    PubMed

    Wtorek, J; Stelter, J; Nowakowski, A

    1999-04-20

    The results obtained using the Technical University of Gdansk Electroimpedance Mammograph (TUGEM) of a 3D phantom study are presented. The TUGEM system is briefly described. The hardware contains the measurement head and DSP-based identification modules controlled by a PC computer. A specially developed reconstruction algorithm, Regulated Correction Frequency Algebraic Reconstruction Technique (RCFART), is used to obtain 3D images. To visualize results, the Advance Visualization System (AVS) is used. It allows a powerful image processing on a fast workstation or on a high-performance computer. Results of three types of 3D conductivity perturbations used in the study (aluminum, Plexiglas, and cucumber) are shown. The relative volumes of perturbations less than 2% of the measurement chamber are easily evidenced.

  13. 3D differential phase contrast microscopy

    NASA Astrophysics Data System (ADS)

    Chen, Michael; Tian, Lei; Waller, Laura

    2016-03-01

    We demonstrate three-dimensional (3D) optical phase and amplitude reconstruction based on coded source illumination using a programmable LED array. Multiple stacks of images along the optical axis are computed from recorded intensities captured by multiple images under off-axis illumination. Based on the first Born approximation, a linear differential phase contrast (DPC) model is built between 3D complex index of refraction and the intensity stacks. Therefore, 3D volume reconstruction can be achieved via a fast inversion method, without the intermediate 2D phase retrieval step. Our system employs spatially partially coherent illumination, so the transverse resolution achieves twice the NA of coherent systems, while axial resolution is also improved 2× as compared to holographic imaging.

  14. Final Report: Laboratory Studies of Spontaneous Reconnection and Intermittent Plasma Objects

    SciTech Connect

    Egedal-Pedersen, Jan; Porkolab, Miklos

    2011-05-31

    The study of the collisionless magnetic reconnection constituted the primary work carried out under this grant. The investigations utilized two magnetic configurations with distinct boundary conditions. Both configurations were based upon the Versatile Toroidal Facility (VTF) at the MIT Plasma Science and Fusion Center and the MIT Physics Department. The NSF/DOE award No. 0613734, supported two graduate students (now Drs. W. Fox and N. Katz) and material expenses. The grant enabled these students to operate the VTF basic plasma physics experiment on magnetic reconnection. The first configuration was characterized by open boundary conditions where the magnetic field lines interface directly with the vacuum vessel walls. The reconnection dynamics for this configuration has been methodically characterized and it has been shown that kinetic effects related to trapped electron trajectories are responsible for the high rates of reconnection observed. This type of reconnection has not been investigated before. Nevertheless, the results are directly relevant to observations by the Wind spacecraft of fast reconnection deep in the Earth magnetotail. The second configuration was developed to be relevant to specifically to numerical simulations of magnetic reconnection, allowing the magnetic field-lines to be contained inside the device. The configuration is compatible with the presence of large current sheets in the reconnection region and reconnection is observed in fast powerful bursts. These reconnection events facilitate the first experimental investigations of the physics governing the spontaneous onset of fast reconnection. In the Report we review the general motivation of this work and provide an overview of our experimental and theoretical results enabled by the support through the awards.

  15. Multi-scale structures of turbulent magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Nakamura, T. K. M.; Nakamura, R.; Narita, Y.; Baumjohann, W.; Daughton, W.

    2016-05-01

    We have analyzed data from a series of 3D fully kinetic simulations of turbulent magnetic reconnection with a guide field. A new concept of the guide filed reconnection process has recently been proposed, in which the secondary tearing instability and the resulting formation of oblique, small scale flux ropes largely disturb the structure of the primary reconnection layer and lead to 3D turbulent features [W. Daughton et al., Nat. Phys. 7, 539 (2011)]. In this paper, we further investigate the multi-scale physics in this turbulent, guide field reconnection process by introducing a wave number band-pass filter (k-BPF) technique in which modes for the small scale (less than ion scale) fluctuations and the background large scale (more than ion scale) variations are separately reconstructed from the wave number domain to the spatial domain in the inverse Fourier transform process. Combining with the Fourier based analyses in the wave number domain, we successfully identify spatial and temporal development of the multi-scale structures in the turbulent reconnection process. When considering a strong guide field, the small scale tearing mode and the resulting flux ropes develop over a specific range of oblique angles mainly along the edge of the primary ion scale flux ropes and reconnection separatrix. The rapid merging of these small scale modes leads to a smooth energy spectrum connecting ion and electron scales. When the guide field is sufficiently weak, the background current sheet is strongly kinked and oblique angles for the small scale modes are widely scattered at the kinked regions. Similar approaches handling both the wave number and spatial domains will be applicable to the data from multipoint, high-resolution spacecraft observations such as the NASA magnetospheric multiscale (MMS) mission.

  16. Why does Steady-State Magnetic Reconnection have a Maximum Local Rate of Order 0.1?

    NASA Astrophysics Data System (ADS)

    Liu, Yi-Hsin; Hesse, M.; Guo, F.; Daughton, W.; Li, H.; Cassak, P. A.; Shay, M. A.

    2017-02-01

    Simulations suggest collisionless steady-state magnetic reconnection of Harris-type current sheets proceeds with a rate of order 0.1, independent of dissipation mechanism. We argue this long-standing puzzle is a result of constraints at the magnetohydrodynamic (MHD) scale. We predict the reconnection rate as a function of the opening angle made by the upstream magnetic fields, finding a maximum reconnection rate close to 0.2. The predictions compare favorably to particle-in-cell simulations of relativistic electron-positron and nonrelativistic electron-proton reconnection. The fact that simulated reconnection rates are close to the predicted maximum suggests reconnection proceeds near the most efficient state allowed at the MHD scale. The rate near the maximum is relatively insensitive to the opening angle, potentially explaining why reconnection has a similar fast rate in differing models.

  17. Colour reconnections in Herwig++

    NASA Astrophysics Data System (ADS)

    Gieseke, Stefan; Röhr, Christian; Siódmok, Andrzej

    2012-11-01

    We describe the implementation details of the colour reconnection model in the event generator Herwig++. We study the impact on final-state observables in detail and confirm the model idea from colour preconfinement on the basis of studies within the cluster hadronization model. Moreover, we show that the description of minimum bias and underlying event data at the LHC is improved with this model and present results of a tune to available data.

  18. Interchange Slip-Running Reconnection and Sweeping SEP-Beams

    NASA Technical Reports Server (NTRS)

    Masson, S.; Aulanier, G.; Pariat, E.; Klein, K.-L.

    2011-01-01

    We present a new model to explain how particles, accelerated at a reconnection site that is not magnetically connected to the Earth, could eventually propagate along the well-connected open flux tube. Our model is based on the results of a low-beta resistive magnetohydrodynamics simulation of a three-dimensional line-tied and initially current-free bipole, that is embedded in a non-uniform open potential field. The topology of this configuration is that of an asymmetric coronal null-point, with a closed fan surface and an open outer spine. When driven by slow photospheric shearing motions, field lines, initially fully anchored below the fan dome, reconnect at the null point, and jump to the open magnetic domain. This is the standard interchange mode as sketched and calculated in 2D. The key result in 3D is that, reconnected open field lines located in the vicinity of the outer spine, keep reconnecting continuously, across an open quasi-separatrix layer, as previously identified for non-open-null-point reconnection. The apparent slipping motion of these field lines leads to form an extended narrow magnetic flux tube at high altitude. Because of the slip-running reconnection, we conjecture that if energetic particles would be travelling through, or be accelerated inside, the diffusion region, they would be successively injected along continuously reconnecting field lines that are connected farther and farther from the spine. At the scale of the full Sun, owing to the super-radial expansion of field lines below 3 solar radius, such energetic particles could easily be injected in field lines slipping over significant distances, and could eventually reach the distant flux tube that is well-connected to the Earth.

  19. Acceleration during magnetic reconnection

    SciTech Connect

    Beresnyak, Andrey; Li, Hui

    2015-07-16

    The presentation begins with colorful depictions of solar x-ray flares and references to pulsar phenomena. Plasma reconnection is complex, could be x-point dominated or turbulent, field lines could break due to either resistivity or non-ideal effects, such as electron pressure anisotropy. Electron acceleration is sometimes observed, and sometimes not. One way to study this complex problem is to have many examples of the process (reconnection) and compare them; the other way is to simplify and come to something robust. Ideal MHD (E=0) turbulence driven by magnetic energy is assumed, and the first-order acceleration is sought. It is found that dissipation in big (length >100 ion skin depths) current sheets is universal and independent on microscopic resistivity and the mean imposed field; particles are regularly accelerated while experiencing curvature drift in flows driven by magnetic tension. One example of such flow is spontaneous reconnection. This explains hot electrons with a power-law tail in solar flares, as well as ultrashort time variability in some astrophysical sources.

  20. Reconnection Between Twisted Flux Tubes - Implications for Coronal Heating

    NASA Astrophysics Data System (ADS)

    Knizhnik, K. J.; Antiochos, S. K.; DeVore, C. R.; Klimchuk, J. A.; Wyper, P. F.

    2015-12-01

    The nature of the heating of the Sun's corona has been a long-standing unanswered problem in solar physics. Beginning with the work of Parker (1972), many authors have argued that the corona is continuously heated through numerous small-scale reconnection events known as nanoflares. In these nanoflare models, stressing of magnetic flux tubes by photospheric motions causes the field to become misaligned, producing current sheets in the corona. These current sheets then reconnect, converting the free energy stored in the magnetic field into heat. In this work, we use the Adaptively Refined MHD Solver (ARMS) to perform 3D MHD simulations that dynamically resolve regions of strong current to study the reconnection between twisted flux tubes in a plane-parallel Parker configuration. We investigate the energetics of the process, and show that the flux tubes accumulate stress gradually before undergoing impulsive reconnection. We study the motion of the individual field lines during reconnection, and demonstrate that the connectivity of the configuration becomes extremely complex, with multiple current sheets being formed, which could lead to enhanced heating. In addition, we show that there is considerable interaction between the twisted flux tubes and the surrounding untwisted field, which contributes further to the formation of current sheets. The implications for observations will be discussed. This work was funded by a NASA Earth and Space Science Fellowship, and by the NASA TR&T Program.

  1. Supernova Remnant in 3-D

    NASA Technical Reports Server (NTRS)

    2009-01-01

    wavelengths. Since the amount of the wavelength shift is related to the speed of motion, one can determine how fast the debris are moving in either direction. Because Cas A is the result of an explosion, the stellar debris is expanding radially outwards from the explosion center. Using simple geometry, the scientists were able to construct a 3-D model using all of this information. A program called 3-D Slicer modified for astronomical use by the Astronomical Medicine Project at Harvard University in Cambridge, Mass. was used to display and manipulate the 3-D model. Commercial software was then used to create the 3-D fly-through.

    The blue filaments defining the blast wave were not mapped using the Doppler effect because they emit a different kind of light synchrotron radiation that does not emit light at discrete wavelengths, but rather in a broad continuum. The blue filaments are only a representation of the actual filaments observed at the blast wave.

    This visualization shows that there are two main components to this supernova remnant: a spherical component in the outer parts of the remnant and a flattened (disk-like) component in the inner region. The spherical component consists of the outer layer of the star that exploded, probably made of helium and carbon. These layers drove a spherical blast wave into the diffuse gas surrounding the star. The flattened component that astronomers were unable to map into 3-D prior to these Spitzer observations consists of the inner layers of the star. It is made from various heavier elements, not all shown in the visualization, such as oxygen, neon, silicon, sulphur, argon and iron.

    High-velocity plumes, or jets, of this material are shooting out from the explosion in the plane of the disk-like component mentioned above. Plumes of silicon appear in the northeast and southwest, while those of iron are seen in the southeast and north. These jets were already known and Doppler velocity measurements have been made for these

  2. Current disruption and its spreading in collision-less magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Jain, Neeraj; Buechner, Joerg; Dorfman, Seth; Ji, Hantao; Sharma, A. Surjalal; Max-Planck/Princeton CenterPlasma Physics Collaboration

    2013-10-01

    Recent magnetic reconnection experiments (MRX) [Dorfman et al., Geophys. Res. Lett. 40, 233 (2012)] have disclosed current disruption in the absence of guide field. During current disruption in MRX, current density and total out-of-reconnection-plane current drop simultaneous with a rise in out-of-reconnection-plane electric field. Here we show that current disruption is an intrinsic property of dynamic formation of X-point configuration of magnetic field in magnetic reconnection, independent of the model used for plasma description and of dimensionality (2-D or 3-D) of reconnection. An analytic expression for the current drop is derived from Ampere's equation and its predictions are verified by 2-D and 3-D electron-magnetohydrodynamic (EMHD) simulations. Three dimensional EMHD simulations show that the current disruption due to localized reconnection spreads along the direction of electron flow with a speed which depends on the wave number of the perturbation. The implications of these results for MRX and other reconnection experiments will be presented. This work was partially funded by the Max-Planck/Princeton Center for Plasma Physics.

  3. Three-Dimensional Turbulent Reconnection Induced by the Plasmoid Instability

    NASA Astrophysics Data System (ADS)

    Huang, Yi-Min; Bhattacharjee, Amitava

    2014-10-01

    It has been established that the Sweet-Parker current layer in high Lundquist number (S) reconnection is unstable to the super-Alfvenic plasmoid instability. Past two-dimensional (2D) magnetohydrodynamic simulations have demonstrated that the plasmoid instability leads to a new regime where the Sweet-Parker current layer changes into a chain of plasmoids connected by secondary current sheets, and the averaged reconnection rate becomes nearly independent of S. In a three-dimensional (3D) configuration with a guide field, the additional degree of freedom allows plasmoid instabilities to grow at oblique angles [Baalrud et al., Phys. Plasmas 19, 022101 (2012)] and develop complex dynamics of flux ropes, which may be viewed as a self-generated turbulent state. In our 3D simulations, kinematic and magnetic energy fluctuations are observed to form cigar-shaped eddies elongated along the direction of local magnetic field, which is a signature of anisotropic MHD turbulence. Additionally, the energy fluctuation spectra are found to satisfy power laws in the inertial range. The characteristics of this self-generated turbulent reconnection are compared with corresponding 2D simulations of the same configuration, as well as turbulent reconnection driven by an external forcing.

  4. Experimental Study of Current-Driven Turbulence During Magnetic Reconnection

    SciTech Connect

    Porkolab, Miklos; Egedal-Pedersen, Jan; Fox, William

    2010-08-31

    nonlinear solitary wave known to evolve from a strong beam-on-tail instability. We established that fast electrons were produced by magnetic reconnection. Overall, these instabilities were found to be a consequence of reconnection, specifically the strong energization of electrons, leading to steep gradients in both coordinate- and velocity-space. Estimates (using quasi-linear theory) of the anomalous resistivity due to these modes did not appear large enough to substantially impact the reconnection process. Relevant publications: W. Fox, M. Porkolab, et al, Phys. Rev. Lett. 101, 255003 (2008). W. Fox, M. Porkolab, et al, Phys. Plasmas 17, 072303, (2010).

  5. 3D Spectroscopy in Astronomy

    NASA Astrophysics Data System (ADS)

    Mediavilla, Evencio; Arribas, Santiago; Roth, Martin; Cepa-Nogué, Jordi; Sánchez, Francisco

    2011-09-01

    Preface; Acknowledgements; 1. Introductory review and technical approaches Martin M. Roth; 2. Observational procedures and data reduction James E. H. Turner; 3. 3D Spectroscopy instrumentation M. A. Bershady; 4. Analysis of 3D data Pierre Ferruit; 5. Science motivation for IFS and galactic studies F. Eisenhauer; 6. Extragalactic studies and future IFS science Luis Colina; 7. Tutorials: how to handle 3D spectroscopy data Sebastian F. Sánchez, Begona García-Lorenzo and Arlette Pécontal-Rousset.

  6. 3D Elevation Program—Virtual USA in 3D

    USGS Publications Warehouse

    Lukas, Vicki; Stoker, J.M.

    2016-04-14

    The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.  

  7. 3D multiplexed immunoplasmonics microscopy

    NASA Astrophysics Data System (ADS)

    Bergeron, Éric; Patskovsky, Sergiy; Rioux, David; Meunier, Michel

    2016-07-01

    Selective labelling, identification and spatial distribution of cell surface biomarkers can provide important clinical information, such as distinction between healthy and diseased cells, evolution of a disease and selection of the optimal patient-specific treatment. Immunofluorescence is the gold standard for efficient detection of biomarkers expressed by cells. However, antibodies (Abs) conjugated to fluorescent dyes remain limited by their photobleaching, high sensitivity to the environment, low light intensity, and wide absorption and emission spectra. Immunoplasmonics is a novel microscopy method based on the visualization of Abs-functionalized plasmonic nanoparticles (fNPs) targeting cell surface biomarkers. Tunable fNPs should provide higher multiplexing capacity than immunofluorescence since NPs are photostable over time, strongly scatter light at their plasmon peak wavelengths and can be easily functionalized. In this article, we experimentally demonstrate accurate multiplexed detection based on the immunoplasmonics approach. First, we achieve the selective labelling of three targeted cell surface biomarkers (cluster of differentiation 44 (CD44), epidermal growth factor receptor (EGFR) and voltage-gated K+ channel subunit KV1.1) on human cancer CD44+ EGFR+ KV1.1+ MDA-MB-231 cells and reference CD44- EGFR- KV1.1+ 661W cells. The labelling efficiency with three stable specific immunoplasmonics labels (functionalized silver nanospheres (CD44-AgNSs), gold (Au) NSs (EGFR-AuNSs) and Au nanorods (KV1.1-AuNRs)) detected by reflected light microscopy (RLM) is similar to the one with immunofluorescence. Second, we introduce an improved method for 3D localization and spectral identification of fNPs based on fast z-scanning by RLM with three spectral filters corresponding to the plasmon peak wavelengths of the immunoplasmonics labels in the cellular environment (500 nm for 80 nm AgNSs, 580 nm for 100 nm AuNSs and 700 nm for 40 nm × 92 nm AuNRs). Third, the developed

  8. Laboratory Experiment of Magnetic Reconnection between Merging Flux Tubes with Strong Guide FIeld

    NASA Astrophysics Data System (ADS)

    Inomoto, M.; Kamio, S.; Kuwahata, A.; Ono, Y.

    2013-12-01

    monochromatic magnetic fluctuations. In conclusion, the laboratory guide field reconnection experiments showed some unique features such as ejection of current sheet, localized enhancement of emission, and excitation of low frequency waves, suggesting intermittent fast reconnection mechanism with significant electron acceleration. [1] N. Nishizuka et al., Astrophysical J. 711, 1062 (2010). [2] Y. Ono et al., Phys. Plasmas 18, 111213 (2011). [3] M. Inomoto et al., Plasma and Fusion Res. 8, 2401112 (2013). [4] M. Inomoto et al., Phys. Plasmas 20, 061209 (2013).

  9. Experimental Study of Lower-hybrid Drift Turbulence in a Reconnecting Current Sheet

    SciTech Connect

    Carter, T. A.; Yamada, M.; Ji, H.; Kulsrud, R. M.; Trintchouck, F.

    2002-06-18

    The role of turbulence in the process of magnetic reconnection has been the subject of a great deal of study and debate in the theoretical literature. At issue in this debate is whether turbulence is essential for fast magnetic reconnection to occur in collisionless current sheets. Some theories claim it is necessary in order to provide anomalous resistivity, while others present a laminar fast reconnection mechanism based on the Hall term in the generalized Ohm's law. In this work, a thorough study of electrostatic potential fluctuations in the current sheet of the Magnetic Reconnection Experiment (MRX) [M. Yamada et al., Phys. Plasmas 4, 1936 (1997)] was performed in order to ascertain the importance of turbulence in a laboratory reconnection experiment. Using amplified floating Langmuir probes, broadband fluctuations in the lower hybrid frequency range (fLH approximately 5-15 MHz) were measured which arise with the formation of the current sheet in MRX. The frequency spectrum, spatial amplitude profile, and spatial correlation characteristics of the measured turbulence were examined carefully, finding consistency with theories of the lower-hybrid drift instability (LHDI). The LHDI and its role in magnetic reconnection has been studied theoretically for decades, but this work represents the first detection and detailed study of the LHDI in a laboratory current sheet. The observation of the LHDI in MRX has provided the unique opportunity to uncover the role of this instability in collisionless reconnection. It was found that: (1) the LHDI fluctuations are confined to the low-beta edge of current sheets in MRX; (2) the LHDI amplitude does not correlate well in time or space with the reconnection electric field, which is directly related to the rate of reconnection; and (3) significant LHDI amplitude persists in high collisionality current sheets where the reconnection rate is classical. These findings suggest that the measured LHDI fluctuations do not play an

  10. 3D World Building System

    ScienceCinema

    None

    2016-07-12

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  11. 3D Buckligami: Digital Matter

    NASA Astrophysics Data System (ADS)

    van Hecke, Martin; de Reus, Koen; Florijn, Bastiaan; Coulais, Corentin

    2014-03-01

    We present a class of elastic structures which exhibit collective buckling in 3D, and create these by a 3D printing/moulding technique. Our structures consist of cubic lattice of anisotropic unit cells, and we show that their mechanical properties are programmable via the orientation of these unit cells.

  12. 3D World Building System

    SciTech Connect

    2013-10-30

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  13. Market study: 3-D eyetracker

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.

  14. Reconnections of Wave Vortex Lines

    ERIC Educational Resources Information Center

    Berry, M. V.; Dennis, M. R.

    2012-01-01

    When wave vortices, that is nodal lines of a complex scalar wavefunction in space, approach transversely, their typical crossing and reconnection is a two-stage process incorporating two well-understood elementary events in which locally coplanar hyperbolas switch branches. The explicit description of this reconnection is a pedagogically useful…

  15. Euro3D Science Conference

    NASA Astrophysics Data System (ADS)

    Walsh, J. R.

    2004-02-01

    The Euro3D RTN is an EU funded Research Training Network to foster the exploitation of 3D spectroscopy in Europe. 3D spectroscopy is a general term for spectroscopy of an area of the sky and derives its name from its two spatial + one spectral dimensions. There are an increasing number of instruments which use integral field devices to achieve spectroscopy of an area of the sky, either using lens arrays, optical fibres or image slicers, to pack spectra of multiple pixels on the sky (``spaxels'') onto a 2D detector. On account of the large volume of data and the special methods required to reduce and analyse 3D data, there are only a few centres of expertise and these are mostly involved with instrument developments. There is a perceived lack of expertise in 3D spectroscopy spread though the astronomical community and its use in the armoury of the observational astronomer is viewed as being highly specialised. For precisely this reason the Euro3D RTN was proposed to train young researchers in this area and develop user tools to widen the experience with this particular type of data in Europe. The Euro3D RTN is coordinated by Martin M. Roth (Astrophysikalisches Institut Potsdam) and has been running since July 2002. The first Euro3D science conference was held in Cambridge, UK from 22 to 23 May 2003. The main emphasis of the conference was, in keeping with the RTN, to expose the work of the young post-docs who are funded by the RTN. In addition the team members from the eleven European institutes involved in Euro3D also presented instrumental and observational developments. The conference was organized by Andy Bunker and held at the Institute of Astronomy. There were over thirty participants and 26 talks covered the whole range of application of 3D techniques. The science ranged from Galactic planetary nebulae and globular clusters to kinematics of nearby galaxies out to objects at high redshift. Several talks were devoted to reporting recent observations with newly

  16. 3D vision system assessment

    NASA Astrophysics Data System (ADS)

    Pezzaniti, J. Larry; Edmondson, Richard; Vaden, Justin; Hyatt, Bryan; Chenault, David B.; Kingston, David; Geulen, Vanilynmae; Newell, Scott; Pettijohn, Brad

    2009-02-01

    In this paper, we report on the development of a 3D vision system consisting of a flat panel stereoscopic display and auto-converging stereo camera and an assessment of the system's use for robotic driving, manipulation, and surveillance operations. The 3D vision system was integrated onto a Talon Robot and Operator Control Unit (OCU) such that direct comparisons of the performance of a number of test subjects using 2D and 3D vision systems were possible. A number of representative scenarios were developed to determine which tasks benefited most from the added depth perception and to understand when the 3D vision system hindered understanding of the scene. Two tests were conducted at Fort Leonard Wood, MO with noncommissioned officers ranked Staff Sergeant and Sergeant First Class. The scenarios; the test planning, approach and protocols; the data analysis; and the resulting performance assessment of the 3D vision system are reported.

  17. 3D printing in dentistry.

    PubMed

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery.

  18. PLOT3D user's manual

    NASA Technical Reports Server (NTRS)

    Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.

    1990-01-01

    PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.

  19. Turbulent reconnection and its implications

    PubMed Central

    Lazarian, A.; Eyink, G.; Vishniac, E.; Kowal, G.

    2015-01-01

    Magnetic reconnection is a process of magnetic field topology change, which is one of the most fundamental processes happening in magnetized plasmas. In most astrophysical environments, the Reynolds numbers corresponding to plasma flows are large and therefore the transition to turbulence is inevitable. This turbulence, which can be pre-existing or driven by magnetic reconnection itself, must be taken into account for any theory of magnetic reconnection that attempts to describe the process in the aforementioned environments. This necessity is obvious as three-dimensional high-resolution numerical simulations show the transition to the turbulence state of initially laminar reconnecting magnetic fields. We discuss ideas of how turbulence can modify reconnection with the focus on the Lazarian & Vishniac (Lazarian & Vishniac 1999 Astrophys. J. 517, 700–718 ()) reconnection model. We present numerical evidence supporting the model and demonstrate that it is closely connected to the experimentally proven concept of Richardson dispersion/diffusion as well as to more recent advances in understanding of the Lagrangian dynamics of magnetized fluids. We point out that the generalized Ohm's law that accounts for turbulent motion predicts the subdominance of the microphysical plasma effects for reconnection for realistically turbulent media. We show that one of the most dramatic consequences of turbulence is the violation of the generally accepted notion of magnetic flux freezing. This notion is a cornerstone of most theories dealing with magnetized plasmas, and therefore its change induces fundamental shifts in accepted paradigms, for instance, turbulent reconnection entails reconnection diffusion process that is essential for understanding star formation. We argue that at sufficiently high Reynolds numbers the process of tearing reconnection should transfer to turbulent reconnection. We discuss flares that are predicted by turbulent reconnection and relate this process to

  20. Turbulent reconnection and its implications.

    PubMed

    Lazarian, A; Eyink, G; Vishniac, E; Kowal, G

    2015-05-13

    Magnetic reconnection is a process of magnetic field topology change, which is one of the most fundamental processes happening in magnetized plasmas. In most astrophysical environments, the Reynolds numbers corresponding to plasma flows are large and therefore the transition to turbulence is inevitable. This turbulence, which can be pre-existing or driven by magnetic reconnection itself, must be taken into account for any theory of magnetic reconnection that attempts to describe the process in the aforementioned environments. This necessity is obvious as three-dimensional high-resolution numerical simulations show the transition to the turbulence state of initially laminar reconnecting magnetic fields. We discuss ideas of how turbulence can modify reconnection with the focus on the Lazarian & Vishniac (Lazarian & Vishniac 1999 Astrophys. J. 517, 700-718 (doi:10.1086/307233)) reconnection model. We present numerical evidence supporting the model and demonstrate that it is closely connected to the experimentally proven concept of Richardson dispersion/diffusion as well as to more recent advances in understanding of the Lagrangian dynamics of magnetized fluids. We point out that the generalized Ohm's law that accounts for turbulent motion predicts the subdominance of the microphysical plasma effects for reconnection for realistically turbulent media. We show that one of the most dramatic consequences of turbulence is the violation of the generally accepted notion of magnetic flux freezing. This notion is a cornerstone of most theories dealing with magnetized plasmas, and therefore its change induces fundamental shifts in accepted paradigms, for instance, turbulent reconnection entails reconnection diffusion process that is essential for understanding star formation. We argue that at sufficiently high Reynolds numbers the process of tearing reconnection should transfer to turbulent reconnection. We discuss flares that are predicted by turbulent reconnection and relate

  1. VirtoScan - a mobile, low-cost photogrammetry setup for fast post-mortem 3D full-body documentations in x-ray computed tomography and autopsy suites.

    PubMed

    Kottner, Sören; Ebert, Lars C; Ampanozi, Garyfalia; Braun, Marcel; Thali, Michael J; Gascho, Dominic

    2017-03-01

    Injuries such as bite marks or boot prints can leave distinct patterns on the body's surface and can be used for 3D reconstructions. Although various systems for 3D surface imaging have been introduced in the forensic field, most techniques are both cost-intensive and time-consuming. In this article, we present the VirtoScan, a mobile, multi-camera rig based on close-range photogrammetry. The system can be integrated into automated PMCT scanning procedures or used manually together with lifting carts, autopsy tables and examination couch. The VirtoScan is based on a moveable frame that carries 7 digital single-lens reflex cameras. A remote control is attached to each camera and allows the simultaneous triggering of the shutter release of all cameras. Data acquisition in combination with the PMCT scanning procedures took 3:34 min for the 3D surface documentation of one side of the body compared to 20:20 min of acquisition time when using our in-house standard. A surface model comparison between the high resolution output from our in-house standard and a high resolution model from the multi-camera rig showed a mean surface deviation of 0.36 mm for the whole body scan and 0.13 mm for a second comparison of a detailed section of the scan. The use of the multi-camera rig reduces the acquisition time for whole-body surface documentations in medico-legal examinations and provides a low-cost 3D surface scanning alternative for forensic investigations.

  2. High-efficiency solid-state dye-sensitized solar cells: fast charge extraction through self-assembled 3D fibrous network of crystalline TiO2 nanowires.

    PubMed

    Tétreault, Nicolas; Horváth, Endre; Moehl, Thomas; Brillet, Jérémie; Smajda, Rita; Bungener, Stéphane; Cai, Ning; Wang, Peng; Zakeeruddin, Shaik M; Forró, László; Magrez, Arnaud; Grätzel, Michael

    2010-12-28

    Herein, we present a novel morphology for solid-state dye-sensitized solar cells based on the simple and straightforward self-assembly of nanorods into a 3D fibrous network of fused single-crystalline anatase nanowires. This architecture offers a high roughness factor, significant light scattering, and up to several orders of magnitude faster electron transport to reach a near-record-breaking conversion efficiency of 4.9%.

  3. Review: Polymeric-Based 3D Printing for Tissue Engineering.

    PubMed

    Wu, Geng-Hsi; Hsu, Shan-Hui

    Three-dimensional (3D) printing, also referred to as additive manufacturing, is a technology that allows for customized fabrication through computer-aided design. 3D printing has many advantages in the fabrication of tissue engineering scaffolds, including fast fabrication, high precision, and customized production. Suitable scaffolds can be designed and custom-made based on medical images such as those obtained from computed tomography. Many 3D printing methods have been employed for tissue engineering. There are advantages and limitations for each method. Future areas of interest and progress are the development of new 3D printing platforms, scaffold design software, and materials for tissue engineering applications.

  4. THEMIS Reconnection Animation

    NASA Technical Reports Server (NTRS)

    2006-01-01

    As the Sun's ionized and magnetized particles are passing by Earth they impart mechanical energy which is transformed into magnetic energy by compressing the tail. The tail field lines eventually merge (or 'reconnect') and slingshot particles towards and away from Earth, thereby converting magnetic into particle energy. This energy finds itself along field lines and powers the aurora on the one hand, and down the tail via the expulsion of a plasma blob, a plasmoid, on the other. This storage-and-release process of solar wind energy by the magnetosphere is called a substorm.

  5. The reconnection gun

    NASA Astrophysics Data System (ADS)

    Cowan, M.; Cnare, E. C.; Duggin, B. W.; Kaye, R. J.; Tucker, T. J.

    1986-11-01

    An electromagnetic launcher called the reconnection gun is introduced. Its potential performance is shown to be superior to that of a modern railgun for projectiles with mass greater than a few hundred grams. It has a 'characteristic velocity' which is an order of magnitude lower for much lower energy loss to ohmic heating. Also, it has several advantages for producing higher acceleration including; no barrel, no drop in acceleration with increase in projectile mass, higher peak pressure on the projectile and smaller differences between average and peak pressure. Experimental results and plans for high-performance, multi-stage designs are briefly discussed.

  6. Evidence of "Tether-Cutting" Reconnection in the Onset of a Quadrupolar Solar Magnetic Eruption

    NASA Technical Reports Server (NTRS)

    Choudhary, Debi Prasad; Sterling, Alphonse C.; Moore, Ronald L.; Yurchyshyn, Vasyl

    2004-01-01

    Extensive study of the near-limb solar filament eruption event on 2000 February 26, involving coronal images from YOHKOH, SOHO EIT and photospheric magnetogram from MID have shown that that both "runaway-tether-cutting-type reconnection" and "fast breakout-type reconnection" may have occurred early in the fast phase of the eruption and may have played an important role in unleashing the explosion (Sterling & Moore 2004). That study did not identify which or if either of these types of reconnection actually triggered the fast phase. Here, together with a magnetogram and He1 10830 A filtergram from NSO/KP, we present Halpha filtergrams from Big Bear Solar Observatory, that show evidence of "tether-cutting-type reconnection" before and during the eruption of the southern filament, situated at one of the neutral lines of the quadrupole magnetic structure.

  7. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITHOUT TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  8. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITH TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  9. 3D printed microfluidics for biological applications.

    PubMed

    Ho, Chee Meng Benjamin; Ng, Sum Huan; Li, King Ho Holden; Yoon, Yong-Jin

    2015-01-01

    The term "Lab-on-a-Chip," is synonymous with describing microfluidic devices with biomedical applications. Even though microfluidics have been developing rapidly over the past decade, the uptake rate in biological research has been slow. This could be due to the tedious process of fabricating a chip and the absence of a "killer application" that would outperform existing traditional methods. In recent years, three dimensional (3D) printing has been drawing much interest from the research community. It has the ability to make complex structures with high resolution. Moreover, the fast building time and ease of learning has simplified the fabrication process of microfluidic devices to a single step. This could possibly aid the field of microfluidics in finding its "killer application" that will lead to its acceptance by researchers, especially in the biomedical field. In this paper, a review is carried out of how 3D printing helps to improve the fabrication of microfluidic devices, the 3D printing technologies currently used for fabrication and the future of 3D printing in the field of microfluidics.

  10. 3D imaging system for biometric applications

    NASA Astrophysics Data System (ADS)

    Harding, Kevin; Abramovich, Gil; Paruchura, Vijay; Manickam, Swaminathan; Vemury, Arun

    2010-04-01

    There is a growing interest in the use of 3D data for many new applications beyond traditional metrology areas. In particular, using 3D data to obtain shape information of both people and objects for applications ranging from identification to game inputs does not require high degrees of calibration or resolutions in the tens of micron range, but does require a means to quickly and robustly collect data in the millimeter range. Systems using methods such as structured light or stereo have seen wide use in measurements, but due to the use of a triangulation angle, and thus the need for a separated second viewpoint, may not be practical for looking at a subject 10 meters away. Even when working close to a subject, such as capturing hands or fingers, the triangulation angle causes occlusions, shadows, and a physically large system that may get in the way. This paper will describe methods to collect medium resolution 3D data, plus highresolution 2D images, using a line of sight approach. The methods use no moving parts and as such are robust to movement (for portability), reliable, and potentially very fast at capturing 3D data. This paper will describe the optical methods considered, variations on these methods, and present experimental data obtained with the approach.

  11. An efficient and robust 3D mesh compression based on 3D watermarking and wavelet transform

    NASA Astrophysics Data System (ADS)

    Zagrouba, Ezzeddine; Ben Jabra, Saoussen; Didi, Yosra

    2011-06-01

    The compression and watermarking of 3D meshes are very important in many areas of activity including digital cinematography, virtual reality as well as CAD design. However, most studies on 3D watermarking and 3D compression are done independently. To verify a good trade-off between protection and a fast transfer of 3D meshes, this paper proposes a new approach which combines 3D mesh compression with mesh watermarking. This combination is based on a wavelet transformation. In fact, the used compression method is decomposed to two stages: geometric encoding and topologic encoding. The proposed approach consists to insert a signature between these two stages. First, the wavelet transformation is applied to the original mesh to obtain two components: wavelets coefficients and a coarse mesh. Then, the geometric encoding is done on these two components. The obtained coarse mesh will be marked using a robust mesh watermarking scheme. This insertion into coarse mesh allows obtaining high robustness to several attacks. Finally, the topologic encoding is applied to the marked coarse mesh to obtain the compressed mesh. The combination of compression and watermarking permits to detect the presence of signature after a compression of the marked mesh. In plus, it allows transferring protected 3D meshes with the minimum size. The experiments and evaluations show that the proposed approach presents efficient results in terms of compression gain, invisibility and robustness of the signature against of many attacks.

  12. Unassisted 3D camera calibration

    NASA Astrophysics Data System (ADS)

    Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.

    2012-03-01

    With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.

  13. Three dimensional reconnection in astrophysical plasmas

    NASA Technical Reports Server (NTRS)

    Spicer, D. S.

    1990-01-01

    Theoretical issues related to three-dimensional reconnection and its application to the space and astrophysical environment are reviewed. Consideration is given to the meaning of reconnection in three dimensions, the way in which periodic and nonperiodic magnetic topologies alter the physics of reconnections, and the effects of chaotic magnetic fields on the reconnection process.

  14. Study of Magnetic Reconnection in Plasma: how it works and energizes plasma particles

    NASA Astrophysics Data System (ADS)

    Yamada, Masaaki

    2015-11-01

    Magnetic reconnection is a phenomenon of nature in which magnetic field lines change their topology in plasma and convert magnetic energy to plasma particles by acceleration and heating. It is a fundamental process at work in laboratory, space and astrophysical plasmas. Magnetic reconnection occurs throughout the Universe: in star forming galaxies; around supernovae; in solar flares; in the earth's magnetosphere; and in fusion plasmas. One of the great challenges in reconnection research has been to understand why reconnection occurs so much faster than predicted by MHD theory. This talk begins with a review of recent discoveries and findings in the research of fast magnetic reconnection in laboratory plasmas and space astrophysical plasmas. I compare the experimental results and space observations with theory and numerical simulations. The collaboration between space and laboratory scientists in reconnection research has reached a point where we can directly compare measurements of the reconnection layer using recently-advanced numerical simulations. In spite of the huge difference in physical scales, we find remarkable commonality between the characteristics of the magnetic reconnection in laboratory and space-astrophysical plasmas. In this talk, I will focus especially on the energy flow, a key feature of reconnection process. We have recently reported our results on the energy conversion and partitioning in a laboratory reconnection layer. In Magnetic Reconnection Experiment (MRX) the mechanisms of ion acceleration and heating are identified and a systematic study of the quantitative inventory of converted energy within a reconnection layer has been made with a well-defined but variable boundary. The measured energy partition in a reconnection region of similar effective size (L ~ 3 ion skin depth) of the Earth's magneto-tail is remarkably consistent with the laboratory results. A more comprehensive study is proposed using MMS satellites very recently put into

  15. Effects of electron inertia in collisionless magnetic reconnection

    SciTech Connect

    Andrés, Nahuel Gómez, Daniel; Martin, Luis; Dmitruk, Pablo

    2014-07-15

    We present a study of collisionless magnetic reconnection within the framework of full two-fluid MHD for a completely ionized hydrogen plasma, retaining the effects of the Hall current, electron pressure and electron inertia. We performed 2.5D simulations using a pseudo-spectral code with no dissipative effects. We check that the ideal invariants of the problem are conserved down to round-off errors. Our numerical results confirm that the change in the topology of the magnetic field lines is exclusively due to the presence of electron inertia. The computed reconnection rates remain a fair fraction of the Alfvén velocity, which therefore qualifies as fast reconnection.

  16. Localized electron heating during magnetic reconnection in MAST

    NASA Astrophysics Data System (ADS)

    Yamada, T.; Tanabe, H.; Watanabe, T. G.; Hayashi, Y.; Imazawa, R.; Inomoto, M.; Ono, Y.; Gryaznevich, M.; Scannell, R.; Michael, C.; The MAST Team

    2016-10-01

    Significant increase in the plasma temperature above 1 keV was measured during the kilogauss magnetic field reconnection of two merging toroidal plasmas under the high-guide field and collision-less conditions. The electron temperature was observed to peak significantly at the X-point inside the current sheet, indicating Joule heating caused by the toroidal electric field along the X-line. This peaked temperature increases significantly with the guide field, in agreement with the electron mean-free path calculation. The slow electron heating in the downstream suggests energy conversion from ions to electrons through ion-electron collisions in the bulk plasma as the second electron heating mechanism in the bulk plasma. The electron density profile clearly reveals the electron density pile-up / fast shock structures in the downstream of reconnection, suggesting energy conversion from ion flow energy to ion thermal energy as well as significant ion heating by reconnection outflow.

  17. Explosive reconnection and particle acceleration in relativistic plasmas

    NASA Astrophysics Data System (ADS)

    Lyutikov, Maxim; Komissarov, Sergey; Porth, Oliver; Sironi, Lorenzo

    2016-10-01

    We develop a model of particle acceleration in explosive reconnection events in relativistic magnetically-dominated plasmas. We identify two stages of particle acceleration: (i) fast explosive prompt X-point collapse and (ii) ensuing island merger. The fastest acceleration occurs during the initial catastrophic X-point collapse, with the reconnection electric field of the order of the magnetic field. During the X-point collapse particles are accelerated by charge-starved electric fields, which can reach (and even exceed) values of the local magnetic field. The explosive stage of reconnection produces non-thermal power-law tails with slopes that depend on the average magnetization sigma. The model has all the ingredients needed for Crab flares: natural formation of highly magnetized regions, explosive dynamics on light travel time, development of high electric fields on macroscopic scales and acceleration of particles to energies well exceeding the average magnetic energy per particle.

  18. Magnetic reconnection in incompressible fluids. [of solar atmosphere and interior

    NASA Technical Reports Server (NTRS)

    Deluca, Edward E.; Craig, Ian J.

    1992-01-01

    The paper investigates the dynamical relaxation of a disturbed X-type magnetic neutral point in a periodic geometry, with an ignorable coordinate, for an incompressible fluid. It is found that the properties of the current sheet cannot be understood in terms of steady state reconnection theory or more recent linear dynamical solutions. Accordingly, a new scaling law for magnetic reconnection is presented, consistent with fast energy dissipation (i.e., the dissipation rate at current maximum is approximately independent of magnetic diffusivity (eta)). The flux annihilation rate, however, scales at eta exp 1/4, faster than the Sweet-Parker rate of sq rt eta but asymptotically much slower than the dissipation rate. These results suggest a flux pile-up regime in which the bulk of the free magnetic energy is released as heat rather than as kinetic energy of mass motion. The implications of our results for reconnection in the solar atmosphere and interior are discussed.

  19. Effects of electron inertia in collisionless magnetic reconnection

    NASA Astrophysics Data System (ADS)

    Andrés, Nahuel; Martin, Luis; Dmitruk, Pablo; Gómez, Daniel

    2014-07-01

    We present a study of collisionless magnetic reconnection within the framework of full two-fluid MHD for a completely ionized hydrogen plasma, retaining the effects of the Hall current, electron pressure and electron inertia. We performed 2.5D simulations using a pseudo-spectral code with no dissipative effects. We check that the ideal invariants of the problem are conserved down to round-off errors. Our numerical results confirm that the change in the topology of the magnetic field lines is exclusively due to the presence of electron inertia. The computed reconnection rates remain a fair fraction of the Alfvén velocity, which therefore qualifies as fast reconnection.

  20. 3D Scan Systems Integration

    DTIC Science & Technology

    2007-11-02

    AGENCY USE ONLY (Leave Blank) 2. REPORT DATE 5 Feb 98 4. TITLE AND SUBTITLE 3D Scan Systems Integration REPORT TYPE AND DATES COVERED...2-89) Prescribed by ANSI Std. Z39-1 298-102 [ EDO QUALITY W3PECTEDI DLA-ARN Final Report for US Defense Logistics Agency on DDFG-T2/P3: 3D...SCAN SYSTEMS INTEGRATION Contract Number SPO100-95-D-1014 Contractor Ohio University Delivery Order # 0001 Delivery Order Title 3D Scan Systems

  1. Magnetic reconnection launcher

    SciTech Connect

    Cowan, M.

    1989-04-04

    An electromagnetic launcher is described, which includes a plurality of electrical stages which are energized sequentially in synchrony with the passage of a projectile. Each stage of the launcher includes two or more coils which are arranged coaxially on either closed-loop or straight lines to form gaps between their ends. The projectile has an electrically conductive gap-portion that passes through all the gaps of all the stages in a direction transverse to the axes of the coils. The coils receive an electric current, store magnetic energy, and convert a significant portion of the stored magnetic energy into kinetic energy of the projectile by magnetic reconnection as the gap portion of the projectile moves through the gap. The magnetic polarity of the opposing coils is in the same direction, e.g. N-S-N-S. A gap portion of the projectile may be made from aluminum and is propelled by the reconnection of magnetic flux stored in the coils which causes accelerating forces to act upon the projectile at both the rear vertical surface of the projectile and at the horizontal surfaces of the projectile near its rear. The gap portion of the projectile may be flat, rectangular and longer than the length of the opposing coils and fit loosely within the gap between the opposing coils.

  2. Magnetic reconnection launcher

    DOEpatents

    Cowan, Maynard

    1989-01-01

    An electromagnetic launcher includes a plurality of electrical stages which are energized sequentially in synchrony with the passage of a projectile. Each stage of the launcher includes two or more coils which are arranged coaxially on either closed-loop or straight lines to form gaps between their ends. The projectile has an electrically conductive gap-portion that passes through all the gaps of all the stages in a direction transverse to the axes of the coils. The coils receive an electric current, store magnetic energy, and convert a significant portion of the stored magnetic energy into kinetic energy of the projectile by magnetic reconnection as the gap portion of the projectile moves through the gap. The magnetic polarity of the opposing coils is in the same direction, e.g. N-S-N-S. A gap portion of the projectile may be made from aluminum and is propelled by the reconnection of magnetic flux stored in the coils which causes accelerating forces to act upon the projectile at both the rear vertical surface of the projectile and at the horizontal surfaces of the projectile near its rear. The gap portion of the projectile may be flat, rectangular and longer than the length of the opposing coils and fit loosely within the gap between the opposing coils.

  3. Prospects for Fermi Particle Acceleration at Coronal Magnetic Reconnection Sites

    NASA Astrophysics Data System (ADS)

    Provornikova, E.; Laming, J. M.; Lukin, V.

    2015-12-01

    The mechanism of first order Fermi acceleration of particles interacting with the converging magnetized flows at a reconnection site was introduced recently in an attempt to predict the energy distribution of particles resulting from violent reconnection in galactic microquasars. More careful consideration of this mechanism showed that the spectral index of accelerated particles is related to the total plasma compression within a reconnection region, similar to that in the formulation for diffusive shock acceleration. In the solar context, reconnection regions producing strong compression could be the source of suprathermal "seed particles". A hard spectrum of such suprathermal particles is believed to be necessary to initiate the particle acceleration process at low Mach number coronal mass ejection shocks close to the Sun where the gradual solar energetic particle events originate. As a first step to investigate the efficiency of Fermi acceleration, we explore the degree of plasma compression that can be achieved at reconnection sites in the solar corona. This work presents a set of 2D two-temperature resistive MHD simulations of the dynamics of several magnetic configurations within a range of lower corona plasma parameters. Energy transport processes in the MHD model include anisotropic thermal conduction for electrons and ions and radiative cooling. Magnetic configurations considered are a Harris current sheet, a force-free current sheet, a flux rope sitting above an arcade of magnetic loops, and two merging flux ropes. We demonstrate that only for some magnetic topologies, corresponding in particular to 3D magnetic nulls, the compression ratio, sufficient for first order Fermi acceleration in the reconnection region, can be achieved. These represent the potential sites in the solar corona where a hard seed particle energetic spectrum could be produced.

  4. New observations of flux ropes in the magnetotail reconnection region

    NASA Astrophysics Data System (ADS)

    Huang, Shiyong; Retino, Alessandro; Phan, Tai; Daughton, W. Bill; Vaivads, Andris; Karimabadi, Homa; Pang, Ye; Zhou, Meng; Sahraoui, Fouad; Li, Guanlai; Yuan, Zhigang; Deng, Xiaohua; Fu, Huishan; Fu, Song; Wang, Dedong

    2016-04-01

    Magnetic reconnection is a fundamental physical process that enables the rapid transfer of magnetic energy into plasma kinetic and thermal energy in the laboratory, astrophysical and space plasma. Flux ropes have been suggested to play important role in controlling the micro-scale physics of magnetic reconnection and electron acceleration. In this presentation, we report new observations of flux ropes in the magnetotail reconnection region based on the Cluster multi-spacecraft data. Firstly, two consecutive magnetic flux ropes, separated by less than 30 s (Δt < 30 s), are observed within one magnetic reconnection diffusion region without strong guide field. In spite of the small but non-trivial global scale negative guide field (-By), there exists a directional change of the core fields of two flux ropes, i.e. -By for the first one, and +By for the second one. This is inconsistent with any theory and simulations. Therefore, we suggest that the core field of flux ropes is formed by compression of the local preexisting By, and that the directional change of core field is due to the change of local preexisting By. Such a change in ambientBy might be caused by some microscale physics. Secondary, we will present in-situ observations of a small scale flux rope locally formed at the separatrix region of magnetic reconnection without large guide field. Bidirectional electron beams (cold and hot beams) and density cavity accompanied by intense wave activities substantiate the crossing of the separatrix region. Density compression and one parallel electron beam are detected inside the flux rope. We suggest that this flux rope is locally generated at the separatrix region due to the tearing instability within the separatrix current layer. This observation sheds new light on the 3D picture of magnetic reconnection in space plasma.

  5. 3D polymer scaffold arrays.

    PubMed

    Simon, Carl G; Yang, Yanyin; Dorsey, Shauna M; Ramalingam, Murugan; Chatterjee, Kaushik

    2011-01-01

    We have developed a combinatorial platform for fabricating tissue scaffold arrays that can be used for screening cell-material interactions. Traditional research involves preparing samples one at a time for characterization and testing. Combinatorial and high-throughput (CHT) methods lower the cost of research by reducing the amount of time and material required for experiments by combining many samples into miniaturized specimens. In order to help accelerate biomaterials research, many new CHT methods have been developed for screening cell-material interactions where materials are presented to cells as a 2D film or surface. However, biomaterials are frequently used to fabricate 3D scaffolds, cells exist in vivo in a 3D environment and cells cultured in a 3D environment in vitro typically behave more physiologically than those cultured on a 2D surface. Thus, we have developed a platform for fabricating tissue scaffold libraries where biomaterials can be presented to cells in a 3D format.

  6. Autofocus for 3D imaging

    NASA Astrophysics Data System (ADS)

    Lee-Elkin, Forest

    2008-04-01

    Three dimensional (3D) autofocus remains a significant challenge for the development of practical 3D multipass radar imaging. The current 2D radar autofocus methods are not readily extendable across sensor passes. We propose a general framework that allows a class of data adaptive solutions for 3D auto-focus across passes with minimal constraints on the scene contents. The key enabling assumption is that portions of the scene are sparse in elevation which reduces the number of free variables and results in a system that is simultaneously solved for scatterer heights and autofocus parameters. The proposed method extends 2-pass interferometric synthetic aperture radar (IFSAR) methods to an arbitrary number of passes allowing the consideration of scattering from multiple height locations. A specific case from the proposed autofocus framework is solved and demonstrates autofocus and coherent multipass 3D estimation across the 8 passes of the "Gotcha Volumetric SAR Data Set" X-Band radar data.

  7. Combinatorial 3D Mechanical Metamaterials

    NASA Astrophysics Data System (ADS)

    Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin

    2015-03-01

    We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist