A time-space domain stereo finite difference method for 3D scalar wave propagation
NASA Astrophysics Data System (ADS)
Chen, Yushu; Yang, Guangwen; Ma, Xiao; He, Conghui; Song, Guojie
2016-11-01
The time-space domain finite difference methods reduce numerical dispersion effectively by minimizing the error in the joint time-space domain. However, their interpolating coefficients are related with the Courant numbers, leading to significantly extra time costs for loading the coefficients consecutively according to velocity in heterogeneous models. In the present study, we develop a time-space domain stereo finite difference (TSSFD) method for 3D scalar wave equation. The method propagates both the displacements and their gradients simultaneously to keep more information of the wavefields, and minimizes the maximum phase velocity error directly using constant interpolation coefficients for different Courant numbers. We obtain the optimal constant coefficients by combining the truncated Taylor series approximation and the time-space domain optimization, and adjust the coefficients to improve the stability condition. Subsequent investigation shows that the TSSFD can suppress numerical dispersion effectively with high computational efficiency. The maximum phase velocity error of the TSSFD is just 3.09% even with only 2 sampling points per minimum wavelength when the Courant number is 0.4. Numerical experiments show that to generate wavefields with no visible numerical dispersion, the computational efficiency of the TSSFD is 576.9%, 193.5%, 699.0%, and 191.6% of those of the 4th-order and 8th-order Lax-Wendroff correction (LWC) method, the 4th-order staggered grid method (SG), and the 8th-order optimal finite difference method (OFD), respectively. Meanwhile, the TSSFD is compatible to the unsplit convolutional perfectly matched layer (CPML) boundary condition for absorbing artificial boundaries. The efficiency and capability to handle complex velocity models make it an attractive tool in imaging methods such as acoustic reverse time migration (RTM).
Parallel 3-D viscoelastic finite difference seismic modelling
NASA Astrophysics Data System (ADS)
Bohlen, Thomas
2002-10-01
Computational power has advanced to a state where we can begin to perform wavefield simulations for realistic (complex) 3-D earth models at frequencies of interest to both seismologists and engineers. On serial platforms, however, 3-D calculations are still limited to small grid sizes and short seismic wave traveltimes. To make use of the efficiency of network computers a parallel 3-D viscoelastic finite difference (FD) code is implemented which allows to distribute the work on several PCs or workstations connected via standard ethernet in an in-house network. By using the portable message passing interface standard (MPI) for the communication between processors, running times can be reduced and grid sizes can be increased significantly. Furthermore, the code shows good performance on massive parallel supercomputers which makes the computation of very large grids feasible. This implementation greatly expands the applicability of the 3-D elastic/viscoelastic finite-difference modelling technique by providing an efficient, portable and practical C-program.
3D Finite Difference Modelling of Basaltic Region
NASA Astrophysics Data System (ADS)
Engell-Sørensen, L.
2003-04-01
The main purpose of the work was to generate realistic data to be applied for testing of processing and migration tools for basaltic regions. The project is based on the three - dimensional finite difference code (FD), TIGER, made by Sintef. The FD code was optimized (parallelized) by the author, to run on parallel computers. The parallel code enables us to model large-scale realistic geological models and to apply traditional seismic and micro seismic sources. The parallel code uses multiple processors in order to manipulate subsets of large amounts of data simultaneously. The general anisotropic code uses 21 elastic coefficients. Eight independent coefficients are needed as input parameters for the general TI medium. In the FD code, the elastic wave field computation is implemented by a higher order FD solution to the elastic wave equation and the wave fields are computed on a staggered grid, shifted half a node in one or two directions. The geological model is a gridded basalt model, which covers from 24 km to 37 km of a real shot line in horizontal direction and from the water surface to the depth of 3.5 km. The 2frac {1}{2}D model has been constructed using the compound modeling software from Norsk Hydro. The vertical parameter distribution is obtained from observations in two wells. At The depth of between 1100 m to 1500 m, a basalt horizon covers the whole sub surface layers. We have shown that it is possible to simulate a line survey in realistic (3D) geological models in reasonable time by using high performance computers. The author would like to thank Norsk Hydro, Statoil, GEUS, and SINTEF for very helpful discussions and Parallab for being helpful with the new IBM, p690 Regatta system.
3D finite-difference seismic migration with parallel computers
Ober, C.C.; Gjertsen, R.; Minkoff, S.; Womble, D.E.
1998-11-01
The ability to image complex geologies such as salt domes in the Gulf of Mexico and thrusts in mountainous regions is essential for reducing the risk associated with oil exploration. Imaging these structures, however, is computationally expensive as datasets can be terabytes in size. Traditional ray-tracing migration methods cannot handle complex velocity variations commonly found near such salt structures. Instead the authors use the full 3D acoustic wave equation, discretized via a finite difference algorithm. They reduce the cost of solving the apraxial wave equation by a number of numerical techniques including the method of fractional steps and pipelining the tridiagonal solves. The imaging code, Salvo, uses both frequency parallelism (generally 90% efficient) and spatial parallelism (65% efficient). Salvo has been tested on synthetic and real data and produces clear images of the subsurface even beneath complicated salt structures.
2015-08-01
information systems (GIS) software. A smaller 6.25 square kilometer area around the Southern Methodist University was extracted from the larger...area and analyzed using an acoustic finite- difference time-domain (FDTD) code. The procedures to model the area using GIS software, extract required...create directories. .................................................. 127 Figure 8.4. Choose section cut to extract data
A 3D staggered-grid finite difference scheme for poroelastic wave equation
NASA Astrophysics Data System (ADS)
Zhang, Yijie; Gao, Jinghuai
2014-10-01
Three dimensional numerical modeling has been a viable tool for understanding wave propagation in real media. The poroelastic media can better describe the phenomena of hydrocarbon reservoirs than acoustic and elastic media. However, the numerical modeling in 3D poroelastic media demands significantly more computational capacity, including both computational time and memory. In this paper, we present a 3D poroelastic staggered-grid finite difference (SFD) scheme. During the procedure, parallel computing is implemented to reduce the computational time. Parallelization is based on domain decomposition, and communication between processors is performed using message passing interface (MPI). Parallel analysis shows that the parallelized SFD scheme significantly improves the simulation efficiency and 3D decomposition in domain is the most efficient. We also analyze the numerical dispersion and stability condition of the 3D poroelastic SFD method. Numerical results show that the 3D numerical simulation can provide a real description of wave propagation.
HEMP 3D -- a finite difference program for calculating elastic-plastic flow
Wilkins, M.L.
1993-05-26
The HEMP 3D program can be used to solve problems in solid mechanics involving dynamic plasticity and time dependent material behavior and problems in gas dynamics. The equations of motion, the conservation equations, and the constitutive relations are solved by finite difference methods following the format of the HEMP computer simulation program formulated in two space dimensions and time. Presented here is an update of the 1975 report on the HEMP 3D numerical technique. The present report includes the sliding surface routines programmed by Robert Gulliford.
3D frequency-domain finite-difference modeling of acoustic wave propagation
NASA Astrophysics Data System (ADS)
Operto, S.; Virieux, J.
2006-12-01
We present a 3D frequency-domain finite-difference method for acoustic wave propagation modeling. This method is developed as a tool to perform 3D frequency-domain full-waveform inversion of wide-angle seismic data. For wide-angle data, frequency-domain full-waveform inversion can be applied only to few discrete frequencies to develop reliable velocity model. Frequency-domain finite-difference (FD) modeling of wave propagation requires resolution of a huge sparse system of linear equations. If this system can be solved with a direct method, solutions for multiple sources can be computed efficiently once the underlying matrix has been factorized. The drawback of the direct method is the memory requirement resulting from the fill-in of the matrix during factorization. We assess in this study whether representative problems can be addressed in 3D geometry with such approach. We start from the velocity-stress formulation of the 3D acoustic wave equation. The spatial derivatives are discretized with second-order accurate staggered-grid stencil on different coordinate systems such that the axis span over as many directions as possible. Once the discrete equations were developed on each coordinate system, the particle velocity fields are eliminated from the first-order hyperbolic system (following the so-called parsimonious staggered-grid method) leading to second-order elliptic wave equations in pressure. The second-order wave equations discretized on each coordinate system are combined linearly to mitigate the numerical anisotropy. Secondly, grid dispersion is minimized by replacing the mass term at the collocation point by its weighted averaging over all the grid points of the stencil. Use of second-order accurate staggered- grid stencil allows to reduce the bandwidth of the matrix to be factorized. The final stencil incorporates 27 points. Absorbing conditions are PML. The system is solved using the parallel direct solver MUMPS developed for distributed
3D Finite-Difference Modeling of Scattered Teleseismic Wavefields in a Subduction Zone
NASA Astrophysics Data System (ADS)
Morozov, I. B.; Zheng, H.
2005-12-01
For a teleseismic array targeting subducting crust in a zone of active subduction, scattering from the zone underlying the trench result in subhorizontally-propagating waves that could be difficult to distinguish from converted P- and S- wave backscattered from the surface. Because back-scattered modes often provide the most spectacular images of subducting slabs, it is important to understand their differences from the arrivals scattered from the trench zone. To investigate the detailed teleseismic wavefield in a subduction zone environment, we performed a full-waveform, 3-D visco-elastic finite-difference modeling of teleseismic wave propagation using a Beowulf cluster. The synthetics show strong scattering from the trench zone, dominated by the mantle and crustal P-waves propagating at 6.2-8.1.km/s and slower. These scattered waves occupy the same time and moveout intervals as the backscattered modes, and also have similar amplitudes. Although their amplitude decay characters are different, with the uncertainties in the velocity and density structure of the subduction zone, unambiguous distinguishing of these modes appears difficult. However, under minimal assumptions (in particular, without invoking slab dehydration), recent observations of receiver function amplitudes decreasing away from the trench favor the interpretation of trench-zone scattering.
Poroelastic Wave Propagation With a 3D Velocity-Stress-Pressure Finite-Difference Algorithm
NASA Astrophysics Data System (ADS)
Aldridge, D. F.; Symons, N. P.; Bartel, L. C.
2004-12-01
Seismic wave propagation within a three-dimensional, heterogeneous, isotropic poroelastic medium is numerically simulated with an explicit, time-domain, finite-difference algorithm. A system of thirteen, coupled, first-order, partial differential equations is solved for the particle velocity vector components, the stress tensor components, and the pressure associated with solid and fluid constituents of the two-phase continuum. These thirteen dependent variables are stored on staggered temporal and spatial grids, analogous to the scheme utilized for solution of the conventional velocity-stress system of isotropic elastodynamics. Centered finite-difference operators possess 2nd-order accuracy in time and 4th-order accuracy in space. Seismological utility is enhanced by an optional stress-free boundary condition applied on a horizontal plane representing the earth's surface. Absorbing boundary conditions are imposed on the flanks of the 3D spatial grid via a simple wavefield amplitude taper approach. A massively parallel computational implementation, utilizing the spatial domain decomposition strategy, allows investigation of large-scale earth models and/or broadband wave propagation within reasonable execution times. Initial algorithm testing indicates that a point force density and/or moment density source activated within a poroelastic medium generates diverging fast and slow P waves (and possibly an S-wave)in accord with Biot theory. Solid and fluid particle velocities are in-phase for the fast P-wave, whereas they are out-of-phase for the slow P-wave. Conversions between all wave types occur during reflection and transmission at interfaces. Thus, although the slow P-wave is regarded as difficult to detect experimentally, its presence is strongly manifest within the complex of waves generated at a lithologic or fluid boundary. Very fine spatial and temporal gridding are required for high-fidelity representation of the slow P-wave, without inducing excessive
3D finite-difference modeling algorithm and anomaly features of ZTEM
NASA Astrophysics Data System (ADS)
Wang, Tao; Tan, Han-Dong; Li, Zhi-Qiang; Wang, Kun-Peng; Hu, Zhi-Ming; Zhang, Xing-Dong
2016-09-01
The Z-Axis tipper electromagnetic (ZTEM) technique is based on a frequency-domain airborne electromagnetic system that measures the natural magnetic field. A survey area was divided into several blocks by using the Maxwell's equations, and the magnetic components at the center of each edge of the grid cell are evaluated by applying the staggered-grid finite-difference method. The tipper and its divergence are derived to complete the 3D ZTEM forward modeling algorithm. A synthetic model is then used to compare the responses with those of 2D finite-element forward modeling to verify the accuracy of the algorithm. ZTEM offers high horizontal resolution to both simple and complex distributions of conductivity. This work is the theoretical foundation for the interpretation of ZTEM data and the study of 3D ZTEM inversion.
Finite-difference model for 3-D flow in bays and estuaries
Smith, Peter E.; Larock, Bruce E.; ,
1993-01-01
This paper describes a semi-implicit finite-difference model for the numerical solution of three-dimensional flow in bays and estuaries. The model treats the gravity wave and vertical diffusion terms in the governing equations implicitly, and other terms explicitly. The model achieves essentially second-order accurate and stable solutions in strongly nonlinear problems by using a three-time-level leapfrog-trapezoidal scheme for the time integration.
DNS of Sheared Particulate Flows with a 3D Explicit Finite-Difference Scheme
NASA Astrophysics Data System (ADS)
Perrin, Andrew; Hu, Howard
2007-11-01
A 3D explicit finite-difference code for direct simulation of the motion of solid particulates in fluids has been developed, and a periodic boundary condition implemented to study the effective viscosity of suspensions in shear. The code enforces the no-slip condition on the surface of spherical particles in a uniform Cartesian grid with a special particle boundary condition based on matching the Stokes flow solutions next to the particle surface with a numerical solution away from it. The method proceeds by approximating the flow next to the particle surface as a Stokes flow in the particle's local coordinates, which is then matched to the finite difference update in the bulk fluid on a ``cage'' of grid points near the particle surface. (The boundary condition is related to the PHYSALIS method (2003), but modified for explicit schemes and with an iterative process removed.) Advantages of the method include superior accuracy of the scheme on a relatively coarse grid for intermediate particle Reynolds numbers, ease of implementation, and the elimination of the need to track the particle surface. For the sheared suspension, the effects of fluid and solid inertia and solid volume fraction on effective viscosity at moderate particle Reynolds numbers and concentrated suspensions will be discussed.
Ground motion simulations in Marmara (Turkey) region from 3D finite difference method
NASA Astrophysics Data System (ADS)
Aochi, Hideo; Ulrich, Thomas; Douglas, John
2016-04-01
In the framework of the European project MARSite (2012-2016), one of the main contributions from our research team was to provide ground-motion simulations for the Marmara region from various earthquake source scenarios. We adopted a 3D finite difference code, taking into account the 3D structure around the Sea of Marmara (including the bathymetry) and the sea layer. We simulated two moderate earthquakes (about Mw4.5) and found that the 3D structure improves significantly the waveforms compared to the 1D layer model. Simulations were carried out for different earthquakes (moderate point sources and large finite sources) in order to provide shake maps (Aochi and Ulrich, BSSA, 2015), to study the variability of ground-motion parameters (Douglas & Aochi, BSSA, 2016) as well as to provide synthetic seismograms for the blind inversion tests (Diao et al., GJI, 2016). The results are also planned to be integrated in broadband ground-motion simulations, tsunamis generation and simulations of triggered landslides (in progress by different partners). The simulations are freely shared among the partners via the internet and the visualization of the results is diffused on the project's homepage. All these simulations should be seen as a reference for this region, as they are based on the latest knowledge that obtained during the MARSite project, although their refinement and validation of the model parameters and the simulations are a continuing research task relying on continuing observations. The numerical code used, the models and the simulations are available on demand.
3-D Finite-Difference Modeling of Earthquakes in the City of Rome, Italy
NASA Astrophysics Data System (ADS)
Akinci, A.; Olsen, K. B.; Rovelli, A.; Marra, F.; Malagnini, L.
2002-12-01
The goal of this study is to estimate 3-D amplification effects from regional and local earthquakes in the city of Rome. Mainly, two distinct seismogenic districts may affect the city of Rome: the (1) Alban Hills region, located about 25 km from downtown Rome, and (2) the Central Apennines, located 80-100 km from Rome where the most recent event occurred on January 13, 1915 (M=6.8) which was felt in Rome with a VII degree intensity. To address the seismic hazard in Rome from such sources we have simulated 0-1 Hz viscoelastic wave propagation in a three-dimensional model of the Tiber Valley, Rome, for an M5.5 scenario earthquake (1 Hz) in the seismogenic area of Alban Hills about 25 km from downtown Rome and an M7.0 earthquake (0.5 Hz) about 100 km east of the valley using a fourth-order staggered-grid finite-difference method. We used a basin model (~ 6 km by 6 km by 0.050 km) which includes sediments with shear-wave velocities as low as 250 m/s in the Tiber River sediments, constrained by more than 3000 borehole measurements. We have also estimated the amplification of the 3D model due to a 1-Hz vertically-incident planar SH wave. Our results suggest that the strongest ground motion amplification in Rome is restricted to the Holocene alluvial areas with a significant concentration close to the edges of the Tiber River valley, in agreement with the results by Tertulliani and Riguzzi (1995). In particular, the fill deposits in the Tiber River generate amplification by up to a factor of 2 with respect to the surrounding volcanics, largest near the contact between the alluvial sediments and the surrounding volcanic deposits for the incident plane wave source. We find 1-Hz peak ground velocities of up to 30 cm/sec for the M5.5, Alban Hills earthquake, largest near the northwestern edges of the Tiber River. The largest 0.5-Hz peak velocity is 24 cm/s for the M7.0 earthquake with extended durations up to about 1 min. The lower maximum frequency for this scenario is
3-D geoelectrical modelling using finite-difference: a new boundary conditions improvement
NASA Astrophysics Data System (ADS)
Maineult, A.; Schott, J.-J.; Ardiot, A.
2003-04-01
Geoelectrical prospecting is a well-known and frequently used method for quantitative and non-destructive subsurface exploration until depths of a few hundreds metres. Thus archeological objects can be efficiently detected as their resistivities often contrast with those of the surrounding media. Nevertheless using the geoelectrical prospecting method has long been restricted due to inhability to model correctly arbitrarily-shaped structures. The one-dimensional modelling and inversion have long been classical, but are of no interest for the majority of field data, since the natural distribution of resistivity is rarely homogeneous or tabular. Since the 1970's some authors developed discrete methods in order to solve the two and three-dimensional problem, using mathematical tools such as finite-element or finite-difference. The finite-difference approach is quite simple, easily understandable and programmable. Since the work of Dey and Morrison (1979), this approach has become quite popular. Nevertheless, one of its major drawbacks is the difficulty to establish satisfying boundary conditions. Recently Lowry et al. (1989) and Zhao and Yedlin (1996) suggested some refinements on the improvement of the boundary problem. We propose a new betterment, based on the splitting of the potential into two terms, the potential due to a reference tabular medium and a secondary potential caused by a disturbance of this medium. The surface response of a tabular medium has long been known (see for example Koefoed 1979). Here we developed the analytical solution for the electrical tabular potential everywhere in the medium, in order to establish more satisfying boundary conditions. The response of the perturbation, that is to say the object of interest, is then solved using volume-difference and preconditioned conjugate gradient. Finally the grid is refined one or more times in the perturbed domain in order to ameliorate the precision. This method of modelling is easy to implement
Finite-Difference Algorithm for Simulating 3D Electromagnetic Wavefields in Conductive Media
NASA Astrophysics Data System (ADS)
Aldridge, D. F.; Bartel, L. C.; Knox, H. A.
2013-12-01
Electromagnetic (EM) wavefields are routinely used in geophysical exploration for detection and characterization of subsurface geological formations of economic interest. Recorded EM signals depend strongly on the current conductivity of geologic media. Hence, they are particularly useful for inferring fluid content of saturated porous bodies. In order to enhance understanding of field-recorded data, we are developing a numerical algorithm for simulating three-dimensional (3D) EM wave propagation and diffusion in heterogeneous conductive materials. Maxwell's equations are combined with isotropic constitutive relations to obtain a set of six, coupled, first-order partial differential equations governing the electric and magnetic vectors. An advantage of this system is that it does not contain spatial derivatives of the three medium parameters electric permittivity, magnetic permeability, and current conductivity. Numerical solution methodology consists of explicit, time-domain finite-differencing on a 3D staggered rectangular grid. Temporal and spatial FD operators have order 2 and N, where N is user-selectable. We use an artificially-large electric permittivity to maximize the FD timestep, and thus reduce execution time. For the low frequencies typically used in geophysical exploration, accuracy is not unduly compromised. Grid boundary reflections are mitigated via convolutional perfectly matched layers (C-PMLs) imposed at the six grid flanks. A shared-memory-parallel code implementation via OpenMP directives enables rapid algorithm execution on a multi-thread computational platform. Good agreement is obtained in comparisons of numerically-generated data with reference solutions. EM wavefields are sourced via point current density and magnetic dipole vectors. Spatially-extended inductive sources (current carrying wire loops) are under development. We are particularly interested in accurate representation of high-conductivity sub-grid-scale features that are common
Finite difference schemes for long-time integration
NASA Technical Reports Server (NTRS)
Haras, Zigo; Taasan, Shlomo
1993-01-01
Finite difference schemes for the evaluation of first and second derivatives are presented. These second order compact schemes were designed for long-time integration of evolution equations by solving a quadratic constrained minimization problem. The quadratic cost function measures the global truncation error while taking into account the initial data. The resulting schemes are applicable for integration times fourfold, or more, longer than similar previously studied schemes. A similar approach was used to obtain improved integration schemes.
Finite difference time domain grid generation from AMC helicopter models
NASA Technical Reports Server (NTRS)
Cravey, Robin L.
1992-01-01
A simple technique is presented which forms a cubic grid model of a helicopter from an Aircraft Modeling Code (AMC) input file. The AMC input file defines the helicopter fuselage as a series of polygonal cross sections. The cubic grid model is used as an input to a Finite Difference Time Domain (FDTD) code to obtain predictions of antenna performance on a generic helicopter model. The predictions compare reasonably well with measured data.
Finite difference time domain calculations of antenna mutual coupling
NASA Technical Reports Server (NTRS)
Luebbers, Raymond J.; Kunz, Karl S.
1991-01-01
The Finite Difference Time Domain (FDTD) technique was applied to a wide variety of electromagnetic analysis problems, including shielding and scattering. However, the method has not been exclusively applied to antennas. Here, calculations of self and mutual admittances between wire antennas are made using FDTD and compared with results obtained during the method of moments. The agreement is quite good, indicating the possibilities for FDTD application to antenna impedance and coupling.
Finite difference time domain calculations of antenna mutual coupling
NASA Technical Reports Server (NTRS)
Luebbers, Raymond J.; Kunz, Karl S.
1991-01-01
The Finite Difference Time Domain (FDTD) technique has been applied to a wide variety of electromagnetic analysis problems, including shielding and scattering. However, the method has not been extensively applied to antennas. In this short paper calculations of self and mutual admittances between wire antennas are made using FDTD and compared with results obtained using the Method of Moments. The agreement is quite good, indicating the possibilities for FDTD application to antenna impedance and coupling.
Finite difference time domain implementation of surface impedance boundary conditions
NASA Technical Reports Server (NTRS)
Beggs, John H.; Luebbers, Raymond J.; Yee, Kane S.; Kunz, Karl S.
1991-01-01
Surface impedance boundary conditions are employed to reduce the solution volume during the analysis of scattering from lossy dielectric objects. In a finite difference solution, they also can be utilized to avoid using small cells, made necessary by shorter wavelengths in conducting media throughout the solution volume. The standard approach is to approximate the surface impedance over a very small bandwidth by its value at the center frequency, and then use that result in the boundary condition. Two implementations of the surface impedance boundary condition are presented. One implementation is a constant surface impedance boundary condition and the other is a dispersive surface impedance boundary condition that is applicable over a very large frequency bandwidth and over a large range of conductivities. Frequency domain results are presented in one dimension for two conductivity values and are compared with exact results. Scattering width results from an infinite square cylinder are presented as a 2-D demonstration. Extensions to 3-D should be straightforward.
Finite difference time domain modeling of spiral antennas
NASA Technical Reports Server (NTRS)
Penney, Christopher W.; Beggs, John H.; Luebbers, Raymond J.
1992-01-01
The objectives outlined in the original proposal for this project were to create a well-documented computer analysis model based on the finite-difference, time-domain (FDTD) method that would be capable of computing antenna impedance, far-zone radiation patterns, and radar cross-section (RCS). The ability to model a variety of penetrable materials in addition to conductors is also desired. The spiral antennas under study by this project meet these requirements since they are constructed of slots cut into conducting surfaces which are backed by dielectric materials.
NASA Astrophysics Data System (ADS)
Li, Y.; Han, B.; Métivier, L.; Brossier, R.
2016-09-01
We investigate an optimal fourth-order staggered-grid finite-difference scheme for 3D frequency-domain viscoelastic wave modeling. An anti-lumped mass strategy is incorporated to minimize the numerical dispersion. The optimal finite-difference coefficients and the mass weighting coefficients are obtained by minimizing the misfit between the normalized phase velocities and the unity. An iterative damped least-squares method, the Levenberg-Marquardt algorithm, is utilized for the optimization. Dispersion analysis shows that the optimal fourth-order scheme presents less grid dispersion and anisotropy than the conventional fourth-order scheme with respect to different Poisson's ratios. Moreover, only 3.7 grid-points per minimum shear wavelength are required to keep the error of the group velocities below 1%. The memory cost is then greatly reduced due to a coarser sampling. A parallel iterative method named CARP-CG is used to solve the large ill-conditioned linear system for the frequency-domain modeling. Validations are conducted with respect to both the analytic viscoacoustic and viscoelastic solutions. Compared with the conventional fourth-order scheme, the optimal scheme generates wavefields having smaller error under the same discretization setups. Profiles of the wavefields are presented to confirm better agreement between the optimal results and the analytic solutions.
Accurate finite difference methods for time-harmonic wave propagation
NASA Technical Reports Server (NTRS)
Harari, Isaac; Turkel, Eli
1994-01-01
Finite difference methods for solving problems of time-harmonic acoustics are developed and analyzed. Multidimensional inhomogeneous problems with variable, possibly discontinuous, coefficients are considered, accounting for the effects of employing nonuniform grids. A weighted-average representation is less sensitive to transition in wave resolution (due to variable wave numbers or nonuniform grids) than the standard pointwise representation. Further enhancement in method performance is obtained by basing the stencils on generalizations of Pade approximation, or generalized definitions of the derivative, reducing spurious dispersion, anisotropy and reflection, and by improving the representation of source terms. The resulting schemes have fourth-order accurate local truncation error on uniform grids and third order in the nonuniform case. Guidelines for discretization pertaining to grid orientation and resolution are presented.
Finite difference time domain analysis of chirped dielectric gratings
NASA Technical Reports Server (NTRS)
Hochmuth, Diane H.; Johnson, Eric G.
1993-01-01
The finite difference time domain (FDTD) method for solving Maxwell's time-dependent curl equations is accurate, computationally efficient, and straight-forward to implement. Since both time and space derivatives are employed, the propagation of an electromagnetic wave can be treated as an initial-value problem. Second-order central-difference approximations are applied to the space and time derivatives of the electric and magnetic fields providing a discretization of the fields in a volume of space, for a period of time. The solution to this system of equations is stepped through time, thus, simulating the propagation of the incident wave. If the simulation is continued until a steady-state is reached, an appropriate far-field transformation can be applied to the time-domain scattered fields to obtain reflected and transmitted powers. From this information diffraction efficiencies can also be determined. In analyzing the chirped structure, a mesh is applied only to the area immediately around the grating. The size of the mesh is then proportional to the electric size of the grating. Doing this, however, imposes an artificial boundary around the area of interest. An absorbing boundary condition must be applied along the artificial boundary so that the outgoing waves are absorbed as if the boundary were absent. Many such boundary conditions have been developed that give near-perfect absorption. In this analysis, the Mur absorbing boundary conditions are employed. Several grating structures were analyzed using the FDTD method.
Iterative methods for 3D implicit finite-difference migration using the complex Padé approximation
NASA Astrophysics Data System (ADS)
Costa, Carlos A. N.; Campos, Itamara S.; Costa, Jessé C.; Neto, Francisco A.; Schleicher, Jörg; Novais, Amélia
2013-08-01
Conventional implementations of 3D finite-difference (FD) migration use splitting techniques to accelerate performance and save computational cost. However, such techniques are plagued with numerical anisotropy that jeopardises the correct positioning of dipping reflectors in the directions not used for the operator splitting. We implement 3D downward continuation FD migration without splitting using a complex Padé approximation. In this way, the numerical anisotropy is eliminated at the expense of a computationally more intensive solution of a large-band linear system. We compare the performance of the iterative stabilized biconjugate gradient (BICGSTAB) and that of the multifrontal massively parallel direct solver (MUMPS). It turns out that the use of the complex Padé approximation not only stabilizes the solution, but also acts as an effective preconditioner for the BICGSTAB algorithm, reducing the number of iterations as compared to the implementation using the real Padé expansion. As a consequence, the iterative BICGSTAB method is more efficient than the direct MUMPS method when solving a single term in the Padé expansion. The results of both algorithms, here evaluated by computing the migration impulse response in the SEG/EAGE salt model, are of comparable quality.
Preliminary simulation of a M6.5 earthquake on the Seattle Fault using 3D finite-difference modeling
Stephenson, William J.; Frankel, Arthur D.
2000-01-01
A three-dimensional finite-difference simulation of a moderate-sized (M 6.5) thrust-faulting earthquake on the Seattle fault demonstrates the effects of the Seattle Basin on strong ground motion in the Puget lowland. The model area includes the cities of Seattle, Bremerton and Bellevue. We use a recently developed detailed 3D-velocity model of the Seattle Basin in these simulations. The model extended to 20-km depth and assumed rupture on a finite fault with random slip distribution. Preliminary results from simulations of frequencies 0.5 Hz and lower suggest amplification can occur at the surface of the Seattle Basin by the trapping of energy in the Quaternary sediments. Surface waves generated within the basin appear to contribute to amplification throughout the modeled region. Several factors apparently contribute to large ground motions in downtown Seattle: (1) radiation pattern and directivity from the rupture; (2) amplification and energy trapping within the Quaternary sediments; and (3) basin geometry and variation in depth of both Quaternary and Tertiary sediments
NASA Astrophysics Data System (ADS)
Schultz, A.
2010-12-01
describe our ongoing efforts to achieve massive parallelization on a novel hybrid GPU testbed machine currently configured with 12 Intel Westmere Xeon CPU cores (or 24 parallel computational threads) with 96 GB DDR3 system memory, 4 GPU subsystems which in aggregate contain 960 NVidia Tesla GPU cores with 16 GB dedicated DDR3 GPU memory, and a second interleved bank of 4 GPU subsystems containing in aggregate 1792 NVidia Fermi GPU cores with 12 GB dedicated DDR5 GPU memory. We are applying domain decomposition methods to a modified version of Weiss' (2001) 3D frequency domain full physics EM finite difference code, an open source GPL licensed f90 code available for download from www.OpenEM.org. This will be the core of a new hybrid 3D inversion that parallelizes frequencies across CPUs and individual forward solutions across GPUs. We describe progress made in modifying the code to use direct solvers in GPU cores dedicated to each small subdomain, iteratively improving the solution by matching adjacent subdomain boundary solutions, rather than iterative Krylov space sparse solvers as currently applied to the whole domain.
Time dependent wave envelope finite difference analysis of sound propagation
NASA Technical Reports Server (NTRS)
Baumeister, K. J.
1984-01-01
A transient finite difference wave envelope formulation is presented for sound propagation, without steady flow. Before the finite difference equations are formulated, the governing wave equation is first transformed to a form whose solution tends not to oscillate along the propagation direction. This transformation reduces the required number of grid points by an order of magnitude. Physically, the transformed pressure represents the amplitude of the conventional sound wave. The derivation for the wave envelope transient wave equation and appropriate boundary conditions are presented as well as the difference equations and stability requirements. To illustrate the method, example solutions are presented for sound propagation in a straight hard wall duct and in a two dimensional straight soft wall duct. The numerical results are in good agreement with exact analytical results.
NASA Astrophysics Data System (ADS)
Kawabe, H.; Kamae, K.
2005-12-01
There is high possibility of the occurrence of the Tonankai and Nankai earthquakes which are capable of causing immense damage. During these huge earthquakes, long period ground motions may strike mega-cities Osaka and Nagoya located inside the Osaka and Nobi basins in which there are many long period and low damping structures (such as tall buildings and oil tanks). It is very important for the earthquake disaster mitigation to predict long period strong ground motions of the future Tonankai and Nankai earthquakes that are capable of exciting long-period strong ground motions over a wide area. In this study, we tried to predict long-period ground motions of the future Tonankai and Nankai earthquakes using 3D finite difference method. We construct a three-dimensional underground structure model including not only the basins but also propagation field from the source to the basins. Resultantly, we can point out that the predominant periods of pseudo-velocity response spectra change basin by basin. Long period ground motions with periods of 5 to 8 second are predominant in the Osaka basin, 3 to 6 second in the Nobi basin and 2 to 5 second in the Kyoto basin. These characteristics of the long-period ground motions are related with the thicknesses of the sediments of the basins. The duration of long period ground motions inside the basin are more than 5 minutes. These results are very useful for the earthquake disaster mitigation of long period structures such as tall buildings and oil tanks.
NASA Astrophysics Data System (ADS)
Perrin, A.; Hu, H.
2006-11-01
We have extended previous work on an 2D explicit finite-difference code for direct simulation of the motion of solid particles in a fluid to 3D. It is challenging to enforce the no-slip condition on the surface of spherical particles in a uniform Cartesian grid. We have implemented a treatment of the boundary condition similar to that in the PHYSALIS method of Takagi et. al. (2003), which is based on matching the Stokes flow solutions next to the particle surface with a numerical solution away from it. The original PHYSALIS method was developed for implicit flow solvers, and required an iterative process to match the Stokes flow solutions with the numerical solution. However, it was easily adapted to work with the present explicit scheme, and found to be more efficient since no iterative process is required in the matching. The method proceeds by approximating the flow next to the particle surface as a Stokes flow in the particle’s local coordinates, which is then matched to the numerically computed external flow on a ``cage'' of grid points near the particle surface. Advantages of the method include superior accuracy of the scheme on a relatively coarse grid for intermediate Reynolds numbers, ease of implementation, and the elimination of the need to track the particle surface. Several examples are presented, including flow over a stationary sphere in a square tube, sedimentation of a particle, and dropping, kissing, and tumbling of two particles. This research is supported by a GAANN fellowship from the U.S. Dept. of Education.
Finite-difference time-domain simulation of GPR data
NASA Astrophysics Data System (ADS)
Chen, How-Wei; Huang, Tai-Min
1998-10-01
Simulation of digital ground penetrating radar (GPR) wave propagation in two-dimensional (2-D) media is developed, tested, implemented, and applied using a time-domain staggered-grid finite-difference (FD) numerical method. Three types of numerical algorithms for constructing synthetic common-shot, constant-offset radar profiles based on an actual transmitter-to-receiver configuration and based on the exploding reflector concept are demonstrated to mimic different types of radar survey geometries. Frequency-dependent attenuation is also incorporated to account for amplitude decay and time shift in the recorded responses. The algorithms are based on an explicit FD solution to Maxwell's curl equations. In addition, the first-order TE mode responses of wave propagation phenomena are considered due to the operating frequency of current GPR instruments. The staggered-grid technique is used to sample the fields and approximate the spatial derivatives with fourth-order FDs. The temporal derivatives are approximated by an explicit second-order difference time-marching scheme. By combining paraxial approximation of the one-way wave equation ( A2) and the damping mechanisms (sponge filter), we propose a new composite absorbing boundary conditions (ABC) algorithm that effectively absorb both incoming and outgoing waves. To overcome the angle- and frequency-dependent characteristic of the absorbing behaviors, each ABC has two types of absorption mechanism. The first ABC uses a modified Clayton and Enquist's A2 condition. Moreover, a fixed and a floating A2 ABC that operates at one grid point is proposed. The second ABC uses a damping mechanism. By superimposing artificial damping and by alternating the physical attenuation properties and impedance contrast of the media within the absorbing region, those waves impinging on the boundary can be effectively attenuated and can prevent waves from reflecting back into the grid. The frequency-dependent characteristic of the damping
Finite difference time domain implementation of surface impedance boundary conditions
NASA Technical Reports Server (NTRS)
Beggs, John H.; Luebbers, Raymond J.; Yee, Kane S.; Kunz, Karl S.
1991-01-01
Surface impedance boundary conditions are employed to reduce the solution volume during the analysis of scattering from lossy dielectric objects. In the finite difference solution, they also can be utilized to avoid using small cells, made necessary by shorter wavelengths in conducting media throughout the solution volume. The standard approach is to approximate the surface impedance over a very small bandwidth by its value at the center frequency, and then use that result in the boundary condition. Here, two implementations of the surface impedance boundary condition are presented. One implementation is a constant surface impedance boundary condition and the other is a dispersive surface impedance boundary condition that is applicable over a very large frequency bandwidth and over a large range of conductivities. Frequency domain results are presented in one dimension for two conductivity values and are compared with exact results. Scattering width results from an infinite square cylinder are presented as a two dimensional demonstration. Extensions to three dimensions should be straightforward.
NASA Technical Reports Server (NTRS)
Baumeister, K. J.; Kreider, K. L.
1996-01-01
An explicit finite difference iteration scheme is developed to study harmonic sound propagation in ducts. To reduce storage requirements for large 3D problems, the time dependent potential form of the acoustic wave equation is used. To insure that the finite difference scheme is both explicit and stable, time is introduced into the Fourier transformed (steady-state) acoustic potential field as a parameter. Under a suitable transformation, the time dependent governing equation in frequency space is simplified to yield a parabolic partial differential equation, which is then marched through time to attain the steady-state solution. The input to the system is the amplitude of an incident harmonic sound source entering a quiescent duct at the input boundary, with standard impedance boundary conditions on the duct walls and duct exit. The introduction of the time parameter eliminates the large matrix storage requirements normally associated with frequency domain solutions, and time marching attains the steady-state quickly enough to make the method favorable when compared to frequency domain methods. For validation, this transient-frequency domain method is applied to sound propagation in a 2D hard wall duct with plug flow.
NASA Technical Reports Server (NTRS)
Baumeister, Kenneth J.; Kreider, Kevin L.
1996-01-01
An explicit finite difference iteration scheme is developed to study harmonic sound propagation in aircraft engine nacelles. To reduce storage requirements for large 3D problems, the time dependent potential form of the acoustic wave equation is used. To insure that the finite difference scheme is both explicit and stable, time is introduced into the Fourier transformed (steady-state) acoustic potential field as a parameter. Under a suitable transformation, the time dependent governing equation in frequency space is simplified to yield a parabolic partial differential equation, which is then marched through time to attain the steady-state solution. The input to the system is the amplitude of an incident harmonic sound source entering a quiescent duct at the input boundary, with standard impedance boundary conditions on the duct walls and duct exit. The introduction of the time parameter eliminates the large matrix storage requirements normally associated with frequency domain solutions, and time marching attains the steady-state quickly enough to make the method favorable when compared to frequency domain methods. For validation, this transient-frequency domain method is applied to sound propagation in a 2D hard wall duct with plug flow.
[Real time 3D echocardiography
NASA Technical Reports Server (NTRS)
Bauer, F.; Shiota, T.; Thomas, J. D.
2001-01-01
Three-dimensional representation of the heart is an old concern. Usually, 3D reconstruction of the cardiac mass is made by successive acquisition of 2D sections, the spatial localisation and orientation of which require complex guiding systems. More recently, the concept of volumetric acquisition has been introduced. A matricial emitter-receiver probe complex with parallel data processing provides instantaneous of a pyramidal 64 degrees x 64 degrees volume. The image is restituted in real time and is composed of 3 planes (planes B and C) which can be displaced in all spatial directions at any time during acquisition. The flexibility of this system of acquisition allows volume and mass measurement with greater accuracy and reproducibility, limiting inter-observer variability. Free navigation of the planes of investigation allows reconstruction for qualitative and quantitative analysis of valvular heart disease and other pathologies. Although real time 3D echocardiography is ready for clinical usage, some improvements are still necessary to improve its conviviality. Then real time 3D echocardiography could be the essential tool for understanding, diagnosis and management of patients.
Transient analysis of printed lines using finite-difference time-domain method
Ahmed, Shahid
2012-03-29
Comprehensive studies of ultra-wideband pulses and electromagnetic coupling on printed coupled lines have been performed using full-wave 3D finite-difference time-domain analysis. Effects of unequal phase velocities of coupled modes, coupling between line traces, and the frequency dispersion on the waveform fidelity and crosstalk have been investigated in detail. To discriminate the contributions of different mechanisms into pulse evolution, single and coupled microstrip lines without (ϵ_{r} = 1) and with (ϵ_{r} > 1) dielectric substrates have been examined. To consistently compare the performance of the coupled lines with substrates of different permittivities and transients of different characteristic times, a generic metric similar to the electrical wavelength has been introduced. The features of pulse propagation on coupled lines with layered and pedestal substrates and on the irregular traces have been explored. Finally, physical interpretations of the simulation results are discussed in the paper.
Finite-difference time-domain simulation of spacetime cloak.
Cornelius, Jason; Liu, Jinjie; Brio, Moysey
2014-05-19
In this work, we present a numerical method that remedies the instabilities of the conventional FDTD approach for solving Maxwell's equations in a space-time dependent magneto-electric medium with direct application to the simulation of the recently proposed spacetime cloak. We utilize a dual grid FDTD method overlapped in the time domain to provide a stable approach for the simulation of a magneto-electric medium with time and space varying permittivity, permeability and coupling coefficient. The developed method can be applied to explore other new physical possibilities offered by spacetime cloaking, metamaterials, and transformation optics.
NASA Technical Reports Server (NTRS)
Beggs, John H.; Luebbers, Raymond J.; Kunz, Karl S.; Yee, Kane S.
1991-01-01
Surface impedance boundary conditions are employed to reduce the solution volume during the analysis of scattering from lossy dielectric objects. In a finite difference solution, they also can be utilized to avoid using small cells, made necessary by shorter wavelengths in conducting media, throughout the solution volume. A 1-D implementation for a surface impedance boundary condition for good conductors in the Finite Difference Time Domain (FDTD) technique.
NASA Astrophysics Data System (ADS)
Bohlen, Thomas; Wittkamp, Florian
2016-03-01
We analyse the performance of a higher order accurate staggered viscoelastic time-domain finite-difference method, in which the staggered Adams-Bashforth (ABS) third-order and fourth-order accurate time integrators are used for temporal discretization. ABS is a multistep method that uses previously calculated wavefields to increase the order of accuracy in time. The analysis shows that the numerical dispersion is much lower than that of the widely used second-order leapfrog method. Numerical dissipation is introduced by the ABS method which is significantly smaller for fourth-order than third-order accuracy. In 1-D and 3-D simulation experiments, we verify the convincing improvements of simulation accuracy of the fourth-order ABS method. In a realistic elastic 3-D scenario, the computing time reduces by a factor of approximately 2.4, whereas the memory requirements increase by approximately a factor of 2.2. The ABS method thus provides an alternative strategy to increase the simulation accuracy in time by investing computer memory instead of computing time.
NASA Technical Reports Server (NTRS)
Beggs, John H.; Luebbers, Raymond J.; Kunz, Karl S.; Yee, Kane S.
1991-01-01
Surface impedance boundary conditions are used to reduce the solution volume during the analysis of scattering from lossy dielectric objects. In a finite difference solution, they also can be used to avoid using small cells, made necessary by shorter wavelengths in conducting media, throughout the solution volume. A one dimensional implementation is presented for a surface impedance boundary condition for good conductors in the Finite Difference Time Domain (FDTD) technique. In order to illustrate the FDTD surface impedance boundary condition, a planar air-lossy dielectric interface is considered.
Parallel electromagnetic simulator based on the Finite-Difference Time Domain method
NASA Astrophysics Data System (ADS)
Walendziuk, Wojciech
2006-03-01
In the following paper the parallel tool for electromagnetic field distribution analysis is presented. The main simulation programme is based on the parallel algorithm of the Finite-Difference Time-Domain method and use Message Passing Interface as a communication library. In the paper also ways of communications among computation nodes in a parallel environment and efficiency of the parallel algorithm are presented.
Finite-difference, spectral and Galerkin methods for time-dependent problems
NASA Technical Reports Server (NTRS)
Tadmor, E.
1983-01-01
Finite difference, spectral and Galerkin methods for the approximate solution of time dependent problems are surveyed. A unified discussion on their accuracy, stability and convergence is given. In particular, the dilemma of high accuracy versus stability is studied in some detail.
Finite Difference Methods for Time-Dependent, Linear Differential Algebraic Equations
1993-10-27
Time-Dependent, Linear Differential Algebraic Equations ’ BY PATRICK J. RABIER AND WERNER C. RHEINBOLDT 2 T r e n - sa le; its tot puba"- c. 2 ed...1993 Finite Difference Methods for Time-Dependent, I Linear Differential Algebraic Equations ’ BY PATRICK J. RABIER AND WERNER C. RHEINBOLDT2...LINEAR DIFFERENTIAL ALGEBRAIC EQUATIONS 1 BY PATRICK J. RABIER AND WERNER C. RHEINBOLDT 2 ABSTRACT. Recently the authors developed a global reduction
NASA Technical Reports Server (NTRS)
Kreider, Kevin L.; Baumeister, Kenneth J.
1996-01-01
An explicit finite difference real time iteration scheme is developed to study harmonic sound propagation in aircraft engine nacelles. To reduce storage requirements for future large 3D problems, the time dependent potential form of the acoustic wave equation is used. To insure that the finite difference scheme is both explicit and stable for a harmonic monochromatic sound field, a parabolic (in time) approximation is introduced to reduce the order of the governing equation. The analysis begins with a harmonic sound source radiating into a quiescent duct. This fully explicit iteration method then calculates stepwise in time to obtain the 'steady state' harmonic solutions of the acoustic field. For stability, applications of conventional impedance boundary conditions requires coupling to explicit hyperbolic difference equations at the boundary. The introduction of the time parameter eliminates the large matrix storage requirements normally associated with frequency domain solutions, and time marching attains the steady-state quickly enough to make the method favorable when compared to frequency domain methods. For validation, this transient-frequency domain method is applied to sound propagation in a 2D hard wall duct with plug flow.
Gabran, S R I; Saad, J H; Salama, M M A; Mansour, R R
2009-01-01
This paper demonstrates the electromagnetic modeling and simulation of an implanted Medtronic deep brain stimulation (DBS) electrode using finite difference time domain (FDTD). The model is developed using Empire XCcel and represents the electrode surrounded with brain tissue assuming homogenous and isotropic medium. The model is created to study the parameters influencing the electric field distribution within the tissue in order to provide reference and benchmarking data for DBS and intra-cortical electrode development.
Accurate finite-difference time-domain simulation of anisotropic media by subpixel smoothing.
Oskooi, Ardavan F; Kottke, Chris; Johnson, Steven G
2009-09-15
Finite-difference time-domain methods suffer from reduced accuracy when discretizing discontinuous materials. We previously showed that accuracy can be significantly improved by using subpixel smoothing of the isotropic dielectric function, but only if the smoothing scheme is properly designed. Using recent developments in perturbation theory that were applied to spectral methods, we extend this idea to anisotropic media and demonstrate that the generalized smoothing consistently reduces the errors and even attains second-order convergence with resolution.
NASA Technical Reports Server (NTRS)
Sun, W.; Loeb, N. G.; Fu, Q.
2002-01-01
The three-dimensional (3-D) finite-difference time-domain (FDTD) technique has been extended to simulate light scattering and absorption by nonspherical particles embedded in an absorbing dielectric medium. A uniaxial perfectly matched layer (UPML) absorbing boundary condition is used to truncate the computational domain. When computing the single-scattering properties of a particle in an absorbing dielectric medium, we derive the single-scattering properties including scattering phase functions, extinction, and absorption efficiencies using a volume integration of the internal field. A Mie solution for light scattering and absorption by spherical particles in an absorbing medium is used to examine the accuracy of the 3-D UPML FDTD code. It is found that the errors in the extinction and absorption efficiencies from the 3-D UPML FDTD are less than similar to 2%. The errors in the scattering phase functions are typically less than similar to 5%. The errors in the asymmetry factors are less than similar to 0.l%. For light scattering by particles in free space, the accuracy of the 3-D UPML FDTD scheme is similar to a previous model.
NASA Astrophysics Data System (ADS)
Weng, W.; Taylor, P. A.
2010-09-01
Based on the early linear and Non-Linear Mixed Spectral Finite-Difference (MSFD and NLMSFD) models, a 3-D non-linear model of planetary boundary-layer flow (NLMSFD-PBL) was developed to study neutral PBL flow over complex terrain. The model assumes upwind or zero-order profiles of mean and turbulence variables about which perturbation quantities are calculated due to the effects of the terrain. In early models, the mean zero-order wind profile was assumed to be a simple logarithmic surface-layer profile and Reynolds stresses were constant throughout the depth of the model domain. This formally limits the applications of model to the surface-layer flow. The new model utilizes the results of early 1-D planetary boundary layer model of Weng and Taylor as the zero-order or upstream profiles of mean and turbulent quantities. The limitations associated with the original MSFD/NLMSFD model (e.g. logarithmic wind profile and constant shear stress layer) are relaxed. The effect of earth's rotation is also included in the model. Model results for planetary boundary-layer flow over complex terrain are discussed, particularly, the flow over Askervein hill - the site of a detailed and much referenced field study of flow over hills in the 1980s. This type of modelling of flow over complex terrain has important applications for wind energy resource assessment and wind farm design.
NASA Technical Reports Server (NTRS)
Lansing, Faiza S.; Rascoe, Daniel L.
1993-01-01
This paper presents a modified Finite-Difference Time-Domain (FDTD) technique using a generalized conformed orthogonal grid. The use of the Conformed Orthogonal Grid, Finite Difference Time Domain (GFDTD) enables the designer to match all the circuit dimensions, hence eliminating a major source o error in the analysis.
Finite difference time domain analysis of microwave ferrite devices and mobile antenna systems
NASA Astrophysics Data System (ADS)
Yildirim, Bahadir Suleyman
This dissertation presents analysis and design of shielded mobile antenna systems and microwave ferrite devices using a finite-difference time-domain method. Novel shielded antenna structures suitable for cellular communications have been analyzed and designed with emphasize on reducing excessive radiated energy absorbed in user's head and hand, while keeping the antenna performance at its peak in the presence of user. These novel antennas include a magnetically shielded antenna, a dual-resonance shielded antenna and, a shorted and truncated microstrip antenna. The effect of magnetic coating on the performance of a shielded monopole antenna is studied extensively. A parametric study is performed to analyze the dual-resonance phenomenon observed in the dual-resonance shielded antenna, optimize the antenna design within the cellular communications band, and improve the antenna performance. Input impedance, near and far fields of the dual-resonance shielded antenna are calculated using the finite-difference time-domain method. Experimental validation is also presented. In addition, performance of a shorted and truncated microstrip antenna has been investigated over a wide range of substrate parameters and dimensions. Objectives of the research work also include development of a finite-difference time-domain technique to accurately model magnetically anisotropic media, including the effect of non-uniform magnetization within the finite-size ferrite material due to demagnetizing fields. A slow wave thin film isolator and a stripline disc junction circulator are analyzed. An extensive parametric study calculates wide-band frequency-dependent parameters of these devices for various device dimensions and material parameters. Finally, a ferrite-filled stripline configuration is analyzed to study the non- linear behaviour of ferrite by introducing a modified damping factor.
Polarization-current-based, finite-difference time-domain, near-to-far-field transformation.
Zeng, Yong; Moloney, Jerome V
2009-05-15
A near-to-far-field transformation algorithm for three-dimensional finite-difference time-domain is presented in this Letter. This approach is based directly on the polarization current of the scatterer, not the scattered near fields. It therefore eliminates the numerical errors originating from the spatial offset of the E and H fields, inherent in the standard near-to-far-field transformation. The proposed method is validated via direct comparisons with the analytical Lorentz-Mie solutions of plane waves scattered by large dielectric and metallic spheres with strong forward-scattering lobes.
NASA Astrophysics Data System (ADS)
Adhikari, Achyut; Dev, Kapil; Asundi, Anand
2016-11-01
Wire grid polarizers (WGP), are sub-wavelength gratings with applications in display projection system due to their compact size, wide field of view and long-term stability. Measurement and testing of these structures are important to optimize their use. This is done by first measuring the Mueller matrix of the WGP using a Mueller matrix polarimeter. Next the finite difference time domain (FDTD) method is used to simulate a similar Mueller matrix thus providing the period and step height of the WGP. This approach may lead to more generic determination of sub-wavelength structures including diffractive optical structures.
The electromagnetic modeling of thin apertures using the finite-difference time-domain technique
NASA Technical Reports Server (NTRS)
Demarest, Kenneth R.
1987-01-01
A technique which computes transient electromagnetic responses of narrow apertures in complex conducting scatterers was implemented as an extension of previously developed Finite-Difference Time-Domain (FDTD) computer codes. Although these apertures are narrow with respect to the wavelengths contained within the power spectrum of excitation, this technique does not require significantly more computer resources to attain the increased resolution at the apertures. In the report, an analytical technique which utilizes Babinet's principle to model the apertures is developed, and an FDTD computer code which utilizes this technique is described.
NASA Astrophysics Data System (ADS)
Yamamoto, Kaho; Iwai, Yosuke; Uchida, Yoshiaki; Nishiyama, Norikazu
2016-08-01
We numerically analyzed the light propagation in cholesteric liquid crystalline (CLC) droplet array by the finite-difference time-domain (FDTD) method. The FDTD method successfully reproduced the experimental light path observed in the complicated photonic structure of the CLC droplet array more accurately than the analysis of CLC droplets by geometric optics with Bragg condition, and this method help us understand the polarization of the propagating light waves. The FDTD method holds great promise for the design of various photonic devices composed of curved photonic materials like CLC droplets and microcapsules.
NASA Astrophysics Data System (ADS)
Gualtieri, L.; Serretti, P.; Morelli, A.
2014-01-01
We present a 3-D P wave velocity model of the crust and shallowest mantle under the Italian region, that includes a revised Moho depth map, obtained by regional seismic travel time tomography. We invert 191,850 Pn and Pg wave arrival times from 6850 earthquakes that occurred within the region from 1988 to 2007, recorded by 264 permanent seismic stations. We adopt a high-resolution linear B-spline model representation, with 0.1° horizontal and 2 km vertical grid spacing, and an accurate finite-difference forward calculation scheme. Our nonlinear iterative inversion process uses the recent European reference 3-D crustal model EPcrust as a priori information. Our resulting model shows two arcs of relatively low velocity in the crust running along both the Alps and the Apennines, underlying the collision belts between plates. Beneath the Western Alps we detect the presence of the Ivrea body, denoted by a strong high P wave velocity anomaly. We also map the Moho discontinuity resulting from the inversion, imaged as the relatively sharp transition between crust and mantle, where P wave velocity steps up to values larger than 8 km/s. This simple condition yields an image quite in agreement with previous studies that use explicit representations for the discontinuity. We find a complex lithospheric structure characterized by shallower Moho close by the Tyrrhenian Sea, intermediate depth along the Adriatic coast, and deepest Moho under the two mountain belts.
Finite-difference time-domain simulation of thermal noise in open cavities
Andreasen, Jonathan; Cao Hui; Taflove, Allen; Kumar, Prem |; Cao Changqi
2008-02-15
A numerical model based on the finite-difference time-domain (FDTD) method is developed to simulate thermal noise in open cavities owing to output coupling. The absorbing boundary of the FDTD grid is treated as a blackbody, whose thermal radiation penetrates the cavity in the grid. The calculated amount of thermal noise in a one-dimensional dielectric cavity recovers the standard result of the quantum Langevin equation in the Markovian regime. Our FDTD simulation also demonstrates that in the non-Markovian regime the buildup of the intracavity noise field depends on the ratio of the cavity photon lifetime to the coherence time of thermal radiation. The advantage of our numerical method is that the thermal noise is introduced in the time domain without prior knowledge of cavity modes.
Samak, M. Mosleh E. Abu; Bakar, A. Ashrif A.; Kashif, Muhammad; Zan, Mohd Saiful Dzulkifly
2016-01-01
This paper discusses numerical analysis methods for different geometrical features that have limited interval values for typically used sensor wavelengths. Compared with existing Finite Difference Time Domain (FDTD) methods, the alternating direction implicit (ADI)-FDTD method reduces the number of sub-steps by a factor of two to three, which represents a 33% time savings in each single run. The local one-dimensional (LOD)-FDTD method has similar numerical equation properties, which should be calculated as in the previous method. Generally, a small number of arithmetic processes, which result in a shorter simulation time, are desired. The alternating direction implicit technique can be considered a significant step forward for improving the efficiency of unconditionally stable FDTD schemes. This comparative study shows that the local one-dimensional method had minimum relative error ranges of less than 40% for analytical frequencies above 42.85 GHz, and the same accuracy was generated by both methods.
Finite difference time domain method for simulation of damage initiation in thin film coatings
NASA Astrophysics Data System (ADS)
Smalakys, Linas; Momgaudis, Balys; Grigutis, Robertas; Melninkaitis, Andrius
2016-12-01
Time resolved digital holography (TRDH) is a versatile tool that provides valuable insights into the dynamics of femtosecond damage initiation by providing spatiotemporal information of excited material. However, interpreting of TRDH data in thin film dielectric coatings is rather complicated without appropriate theoretical models that are able to correctly describe underlying nature of damage formation. Therefore, a model based on finite difference time domain (FDTD) method with complete Keldysh theory for nonlinear ionization of atoms and multiple rate equation (MRE) method for conduction band electrons was developed. The model was used to reproduce both temporal and spatial characteristics of TRDH experiment performed on Ta2O5 dielectric coating. Fitted material parameters were then applied to indirectly estimate LIDT of the coating.
Finite Difference Time Domain Electromagnetic Scattering from Frequency-Dependent Lossy Materials
NASA Technical Reports Server (NTRS)
Luebbers, Raymond J.; Beggs, John H.
1991-01-01
During this effort the tasks specified in the Statement of Work have been successfully completed. The extension of Finite Difference Time Domain (FDTD) to more complicated materials has been made. A three-dimensional FDTD code capable of modeling interactions with both dispersive dielectric and magnetic materials has been written, validated, and documented. This code is efficient and is capable of modeling interesting targets using a modest computer work station platform. However, in addition to the tasks in the Statement of Work, a significant number of other FDTD extensions and calculations have been made. RCS results for two different plate geometries have been reported. The FDTD method has been extended to computing far zone time domain results in two dimensions. Finally, the capability to model nonlinear materials has been incorporated into FDTD and validated. The FDTD computer codes developed have been supplied, along with documentation, and preprints describing the other FDTD advances have been included with this report as attachments.
Finite difference time domain calculation of transients in antennas with nonlinear loads
NASA Technical Reports Server (NTRS)
Luebbers, Raymond J.; Beggs, John H.; Kunz, Karl S.; Chamberlin, Kent
1991-01-01
In this paper transient fields for antennas with more general geometries are calculated directly using Finite Difference Time Domain methods. In each FDTD cell which contains a nonlinear load, a nonlinear equation is solved at each time step. As a test case the transient current in a long dipole antenna with a nonlinear load excited by a pulsed plane wave is computed using this approach. The results agree well with both calculated and measured results previously published. The approach given here extends the applicability of the FDTD method to problems involving scattering from targets including nonlinear loads and materials, and to coupling between antennas containing nonlinear loads. It may also be extended to propagation through nonlinear materials.
Finite-difference time-domain analysis for the dynamics and diffraction of exciton-polaritons.
Chen, Minfeng; Chang, Yia-Chung; Hsieh, Wen-Feng
2015-10-01
We adopted a finite-difference time-domain (FDTD) scheme to simulate the dynamics and diffraction of exciton-polaritons, governed by the coupling of polarization waves with electromagnetic waves. The polarization wave, an approximate solution to the Schrödinger's equation at low frequencies, essentially captures the exciton behavior. Numerical stability of the scheme is analyzed and simple examples are provided to prove its validity. The system considered is both temporally and spatially dispersive, for which the FDTD analysis has attracted less attention in the literature. Here, we demonstrate that the FDTD scheme could be useful for studying the optical response of the exciton-polariton and its dynamics. The diffraction of a polariton wave from a polaritonic grating is also considered, and many sharp resonances are found, which manifest the interference effect of polariton waves. This illustrates that the measurement of transmittance or reflectance near polariton resonance can reveal subwavelength features in semiconductors, which are sensitive to polariton scattering.
Application of the symplectic finite-difference time-domain scheme to electromagnetic simulation
Sha, Wei . E-mail: ws108@ahu.edu.cn; Huang, Zhixiang; Wu, Xianliang; Chen, Mingsheng
2007-07-01
An explicit fourth-order finite-difference time-domain (FDTD) scheme using the symplectic integrator is applied to electromagnetic simulation. A feasible numerical implementation of the symplectic FDTD (SFDTD) scheme is specified. In particular, new strategies for the air-dielectric interface treatment and the near-to-far-field (NFF) transformation are presented. By using the SFDTD scheme, both the radiation and the scattering of three-dimensional objects are computed. Furthermore, the energy-conserving characteristic hold for the SFDTD scheme is verified under long-term simulation. Numerical results suggest that the SFDTD scheme is more efficient than the traditional FDTD method and other high-order methods, and can save computational resources.
A finite difference-time domain technique for modeling narrow apertures in conducting scatterers
NASA Technical Reports Server (NTRS)
Demarest, Kenneth R.
1987-01-01
The finite difference-time domain (FDTD) technique has proven to be a valuable tool for the calculation of the transient and steady state scattering characteristics of relatively complex scatterer and source configurations. In spite of its usefulness, it exhibits serious deficiencies when used to analyze geometries that contain fine detail. An FDTD technique is described that utilizes Babinet's principle to decouple the regions on both sides of the aperture. The result is an FDTD technique that is capable of modeling apertures that are much smaller than the spatial grid used in the analysis and yet is not perturbed by numerical noise when used in the 'scattered field' mode. Numerical results are presented that show the field penetration through cavity-backed apertures that are much smaller than the spatial grid used during the solution.
The analysis of reactively loaded microstrip antennas by finite difference time domain modelling
NASA Technical Reports Server (NTRS)
Hilton, G. S.; Beach, M. A.; Railton, C. J.
1990-01-01
In recent years, much interest has been shown in the use of printed circuit antennas in mobile satellite and communications terminals at microwave frequencies. Although such antennas have many advantages in weight and profile size over more conventional reflector/horn configurations, they do, however, suffer from an inherently narrow bandwidth. A way of optimizing the bandwidth of such antennas by an electronic tuning technique using a loaded probe mounted within the antenna structure is examined, and the resulting far-field radiation patterns are shown. Simulation results from a 2D finite difference time domain (FDTD) model for a rectangular microstrip antenna loaded with shorting pins are given and compared to results obtained with an actual antenna. It is hoped that this work will result in a design package for the analysis of microstrip patch antenna elements.
Development of the Finite Difference Time Domain Method on a Lebedev Grid for Anisotropic Materials
NASA Astrophysics Data System (ADS)
Nauta, Marcel D.
The finite-difference time-domain (FDTD) method is derived on a Lebedev grid, instead of the standard Yee grid, to better represent the constitutive relations in anisotropic materials. The Lebedev grid extends the Yee grid by approximating Maxwell's equations with tensor constitutive relations using only central differences. A dispersion relation with stability criteria is derived and it is proven that the Lebedev grid has a consistent calculus. An integral derivation of the update equations illustrates how to appropriately excite the grid. This approach is also used to derive the update equations at planar material interfaces and domain edge PEC. Lebedev grid results are compared with analytical and Yee grid solutions using an equal memory comparison. Numerical results show that the Lebedev grid suffers greater dispersion error but better represents material interfaces. Focus is given to generalizing the concepts that make the Yee grid robust for isotropic materials. Keywords: FDTD, anisotropic materials, Lebedev grid, collocated grids.
Inclusion of lumped elements in finite difference time domain electromagnetic calculations
Thomas, V.A.; Jones, M.E.; Mason, R.J.
1994-12-31
A general approach for including lumped circuit elements in a finite difference, time domain (FD-TD) solution of Maxwell`s equations is presented. The methodology allows the direct access to SPICE to model the lumped circuits, while the full 3-Dimensional solution to Maxwell`s equations provides the electromagnetic field evolution. This type of approach could be used to mode a pulsed power machine by using a SPICE model for the driver and using an electromagnetic PIC code for the plasma/electromagnetics calculation. The evolution of the driver can be made self consistent with the behavior of the plasma load. Other applications are also possible, including modeling of nonlinear microwave circuits (as long as the non-linearities may be expressed in terms of a lumped element) and self-consistent calculation of very high speed computer interconnections and digital circuits.
NASA Astrophysics Data System (ADS)
Matsui, Tatsunosuke; Okajima, Akiko
2014-01-01
The photonic nanojet (PNJ) from a microcylinder with liquid crystals (LCs) showing tangential molecular alignment inside the microcylinder has been numerically analyzed on the basis of the finite-difference time-domain method. By introducing a small degree of birefringence, the characteristics of the PNJ, such as propagation length and polarization state, can be drastically changed. The azimuth angle and the ellipticity of the elliptically polarized PNJ obtained from the LC microcylinder changes within the propagation lengths in the micrometer range even in the isotropic matrix, which might be attributed to the jet like spatial profile of the PNJ. By using LC microcylinders or microspheres, we may obtain a rich variety of PNJs with unique polarization characteristics, which might open a new avenue for the development of novel optical devices with electrical tunability.
NASA Astrophysics Data System (ADS)
Moczo, Peter; Kristek, Jozef; Galis, Martin; Chaljub, Emmanuel; Etienne, Vincent
2011-12-01
We analyse 13 3-D numerical time-domain explicit schemes for modelling seismic wave propagation and earthquake motion for their behaviour with a varying P-wave to S-wave speed ratio (VP/VS). The second-order schemes include three finite-difference, three finite-element and one discontinuous-Galerkin schemes. The fourth-order schemes include three finite-difference and two spectral-element schemes. All schemes are second-order in time. We assume a uniform cubic grid/mesh and present all schemes in a unified form. We assume plane S-wave propagation in an unbounded homogeneous isotropic elastic medium. We define relative local errors of the schemes in amplitude and the vector difference in one time step and normalize them for a unit time. We also define the equivalent spatial sampling ratio as a ratio at which the maximum relative error is equal to the reference maximum error. We present results of the extensive numerical analysis. We theoretically (i) show how a numerical scheme sees the P and S waves if the VP/VS ratio increases, (ii) show the structure of the errors in amplitude and the vector difference and (iii) compare the schemes in terms of the truncation errors of the discrete approximations to the second mixed and non-mixed spatial derivatives. We find that four of the tested schemes have errors in amplitude almost independent on the VP/VS ratio. The homogeneity of the approximations to the second mixed and non-mixed spatial derivatives in terms of the coefficients of the leading terms of their truncation errors as well as the absolute values of the coefficients are key factors for the behaviour of the schemes with increasing VP/VS ratio. The dependence of the errors in the vector difference on the VP/VS ratio should be accounted for by a proper (sufficiently dense) spatial sampling.
Kemp, Jonathan A; Bilbao, Stefan; McMaster, James; Smith, Richard A
2013-08-01
Wave separation within a trumpet is presented using three high pressure microphones to measure pressure waves within the curved, constant cross-section tuning slide of the instrument while the instrument was being played by a virtuoso trumpet player. A closer inter-microphone spacing was possible in comparison to previous work through the use of time domain windowing on non-causal transfer functions and performing wave separation in the frequency domain. Time domain plots of the experimental wave separation were then compared to simulations using a physical model based on a time domain finite difference simulation of the trumpet bore coupled to a one mass, two degree of freedom lip model. The time domain and frequency spectra of the measured and synthesized sounds showed a similar profile, with the sound produced by the player showing broader spectral peaks in experimental data. Using a quality factor of 5 for the lip model was found to give greater agreement between the simulated and experimental starting transients in comparison to the values in the range 1-3 often assumed. Deviations in the spectral content and wave shape provide insights into the areas where future research may be directed in improving the accuracy of physical modeling synthesis.
NASA Technical Reports Server (NTRS)
Ryan, Deirdre A.; Langdon, H. Scott; Beggs, John H.; Steich, David J.; Luebbers, Raymond J.; Kunz, Karl S.
1992-01-01
The approach chosen to model steady state scattering from jet engines with moving turbine blades is based upon the Finite Difference Time Domain (FDTD) method. The FDTD method is a numerical electromagnetic program based upon the direct solution in the time domain of Maxwell's time dependent curl equations throughout a volume. One of the strengths of this method is the ability to model objects with complicated shape and/or material composition. General time domain functions may be used as source excitations. For example, a plane wave excitation may be specified as a pulse containing many frequencies and at any incidence angle to the scatterer. A best fit to the scatterer is accomplished using cubical cells in the standard cartesian implementation of the FDTD method. The material composition of the scatterer is determined by specifying its electrical properties at each cell on the scatterer. Thus, the FDTD method is a suitable choice for problems with complex geometries evaluated at multiple frequencies. It is assumed that the reader is familiar with the FDTD method.
Finite difference time domain calculation of transients in antennas with nonlinear loads
NASA Technical Reports Server (NTRS)
Luebbers, Raymond J.; Beggs, John H.; Kunz, Karl S.; Chamberlin, Kent
1991-01-01
Determining transient electromagnetic fields in antennas with nonlinear loads is a challenging problem. Typical methods used involve calculating frequency domain parameters at a large number of different frequencies, then applying Fourier transform methods plus nonlinear equation solution techniques. If the antenna is simple enough so that the open circuit time domain voltage can be determined independently of the effects of the nonlinear load on the antennas current, time stepping methods can be applied in a straightforward way. Here, transient fields for antennas with more general geometries are calculated directly using Finite Difference Time Domain (FDTD) methods. In each FDTD cell which contains a nonlinear load, a nonlinear equation is solved at each time step. As a test case, the transient current in a long dipole antenna with a nonlinear load excited by a pulsed plane wave is computed using this approach. The results agree well with both calculated and measured results previously published. The approach given here extends the applicability of the FDTD method to problems involving scattering from targets, including nonlinear loads and materials, and to coupling between antennas containing nonlinear loads. It may also be extended to propagation through nonlinear materials.
Consistent modeling of boundaries in acoustic finite-difference time-domain simulations.
Häggblad, Jon; Engquist, Björn
2012-09-01
The finite-difference time-domain method is one of the most popular for wave propagation in the time domain. One of its advantages is the use of a structured staggered grid, which makes it simple and efficient on modern computer architectures. A drawback, however, is the difficulty in approximating oblique boundaries, having to resort to staircase approximations. In many scattering problems this means that the grid resolution required to obtain an accurate solution is much higher than what is dictated by propagation in a homogeneous material. In this paper zero boundary data are considered, first for the velocity and then the pressure. These two forms of boundary conditions model perfectly rigid and pressure-release boundaries, respectively. A simple and efficient method to consistently model curved rigid boundaries in two dimensions was developed in Tornberg and Engquist [J. Comput. Phys. 227, 6922-6943 (2008)]. Here this treatment is generalized to three dimensions. Based on the approach of this method, a technique to model pressure-release surfaces with second order accuracy and without additional restriction on the timestep is also introduced. The structure of the standard method is preserved, making it easy to use in existing solvers. The effectiveness is demonstrated in several numerical tests.
Kooijman, Gerben; Ouweltjes, Okke
2009-04-01
A lumped element electroacoustic model for a synthetic jet actuator is presented. The model includes the nonlinear flow resistance associated with flow separation and employs a finite difference scheme in the time domain. As opposed to more common analytical frequency domain electroacoustic models, in which the nonlinear resistance can only be considered as a constant, it allows the calculation of higher harmonics, i.e., distortion components, generated as a result of this nonlinear resistance. Model calculations for the time-averaged momentum flux of the synthetic jet as well as the radiated sound power spectrum are compared to experimental results for various configurations. It is shown that a significantly improved prediction of the momentum flux-and thus flow velocity-of the jet is obtained when including the nonlinear resistance. Here, the current model performs slightly better than an analytical model. For the power spectrum of radiated sound, a reasonable agreement is obtained when assuming a plausible slight asymmetry in the nonlinear resistance. However, results suggest that loudspeaker nonlinearities play a significant role as well in the generation of the first few higher harmonics.
Finite-difference time-domain synthesis of infrasound propagation through an absorbing atmosphere.
de Groot-Hedlin, C
2008-09-01
Equations applicable to finite-difference time-domain (FDTD) computation of infrasound propagation through an absorbing atmosphere are derived and examined in this paper. It is shown that over altitudes up to 160 km, and at frequencies relevant to global infrasound propagation, i.e., 0.02-5 Hz, the acoustic absorption in dB/m varies approximately as the square of the propagation frequency plus a small constant term. A second-order differential equation is presented for an atmosphere modeled as a compressible Newtonian fluid with low shear viscosity, acted on by a small external damping force. It is shown that the solution to this equation represents pressure fluctuations with the attenuation indicated above. Increased dispersion is predicted at altitudes over 100 km at infrasound frequencies. The governing propagation equation is separated into two partial differential equations that are first order in time for FDTD implementation. A numerical analysis of errors inherent to this FDTD method shows that the attenuation term imposes additional stability constraints on the FDTD algorithm. Comparison of FDTD results for models with and without attenuation shows that the predicted transmission losses for the attenuating media agree with those computed from synthesized waveforms.
Integration of real-time 3D image acquisition and multiview 3D display
NASA Astrophysics Data System (ADS)
Zhang, Zhaoxing; Geng, Zheng; Li, Tuotuo; Li, Wei; Wang, Jingyi; Liu, Yongchun
2014-03-01
Seamless integration of 3D acquisition and 3D display systems offers enhanced experience in 3D visualization of the real world objects or scenes. The vivid representation of captured 3D objects displayed on a glasses-free 3D display screen could bring the realistic viewing experience to viewers as if they are viewing real-world scene. Although the technologies in 3D acquisition and 3D display have advanced rapidly in recent years, effort is lacking in studying the seamless integration of these two different aspects of 3D technologies. In this paper, we describe our recent progress on integrating a light-field 3D acquisition system and an autostereoscopic multiview 3D display for real-time light field capture and display. This paper focuses on both the architecture design and the implementation of the hardware and the software of this integrated 3D system. A prototype of the integrated 3D system is built to demonstrate the real-time 3D acquisition and 3D display capability of our proposed system.
NASA Astrophysics Data System (ADS)
Yan, Hongyong; Yang, Lei; Dai, Hengchang; Li, Xiang-Yang
2016-10-01
Elastic reverse-time migration (RTM) can reflect the underground elastic information more comprehensively than single-component Pwave migration. One of the most important requirements of elastic RTM is to solve wave equations. The imaging accuracy and efficiency of RTM depends heavily on the algorithms used for solving wave equations. In this paper, we propose an efficient staggered-grid finite-difference (SFD) scheme based on a sampling approximation method with adaptive variable difference operator lengths to implement elastic prestack RTM. Numerical dispersion analysis and wavefield extrapolation results show that the sampling approximation SFD scheme has greater accuracy than the conventional Taylor-series expansion SFD scheme. We also test the elastic RTM algorithm on theoretical models and a field data set, respectively. Experiments presented demonstrate that elastic RTM using the proposed SFD scheme can generate better images than that using the Taylor-series expansion SFD scheme, particularly for PS images. FurH. thermore, the application of adaptive variable difference operator lengths can effectively improve the computational efficiency of elastic RTM.
Finite-difference Time-domain Modeling of Laser-induced Periodic Surface Structures
NASA Astrophysics Data System (ADS)
Römer, G. R. B. E.; Skolski, J. Z. P.; Oboňa, J. Vincenc; Veld, A. J. Huis in't.
Laser-induced periodic surface structures (LIPSSs) consist of regular wavy surface structures with amplitudes the (sub)micrometer range and periodicities in the (sub)wavelength range. It is thought that periodically modulated absorbed laser energy is initiating the growth of LIPSSs. The "Sipe theory" (or "Efficacy factor theory") provides an analytical model of the interaction of laser radiation with a rough surface of the material, predicting modulated absorption just below the surface of the material. To address some limitations of this model, the finite-difference time-domain (FDTD) method was employed to numerically solve the two coupled Maxwell's curl equations, for linear, isotropic, dispersive materials with no magnetic losses. It was found that the numerical model predicts the periodicity and orientation of various types of LIPSSs which might occur on the surface of the material sample. However, it should be noted that the numerical FDTD model predicts the signature or "fingerprints" of several types of LIPSSs, at different depths, based on the inhomogeneously absorbed laser energy at those depths. Whether these types of (combinations of) LIPSSs will actually form on a material will also depend on other physical phenomena, such as the excitation of the material, as well as thermal-mechanical phenomena, such as the state and transport of the material.
NASA Astrophysics Data System (ADS)
Ibey, Bennett L.; Payne, Jason A.; Mixon, Dustin G.; Thomas, Robert J.; Roach, William P.
2008-02-01
Assessing the biological reaction to electromagnetic (EM) radiation of all frequencies and intensities is essential to the understanding of both the potential damage caused by the radiation and the inherent mechanisms within biology that respond, protect, or propagate damage to surrounding tissues. To understand this reaction, one may model the electromagnetic irradiation of tissue phantoms according to empirically measured or intelligently estimated dielectric properties. Of interest in this study is the terahertz region (0.2-2.0 THz), ranging from millimeter to infrared waves, which has been studied only recently due to lack of efficient sources. The specific interaction between this radiation and human tissue is greatly influenced by the significant EM absorption of water across this range, which induces a pronounced heating of the tissue surface. This study compares the Monte Carlo Multi-Layer (MCML) and Finite Difference Time Domain (FDTD) approaches for modeling the terahertz irradiation of human dermal tissue. Two congruent simulations were performed on a one-dimensional tissue model with unit power intensity profile. This works aims to verify the use of either technique for modeling terahertz-tissue interaction for minimally scattering tissues.
Udagedara, Indika; Premaratne, Malin; Rukhlenko, Ivan D; Hattori, Haroldo T; Agrawal, Govind P
2009-11-09
Finite-difference time-domain (FDTD) simulations of any electromagnetic problem require truncation of an often-unbounded physical region by an electromagnetically bounded region by deploying an artificial construct known as the perfectly matched layer (PML). As it is not possible to construct a universal PML that is non-reflective for different materials, PMLs that are tailored to a specific problem are required. For example, depending on the number of dispersive materials being truncated at the boundaries of a simulation region, an FDTD code may contain multiple sets of update equations for PML implementations. However, such an approach is prone to introducing coding errors. It also makes it extremely difficult to maintain and upgrade an existing FDTD code. In this paper, we solve this problem by developing a new, unified PML algorithm that can effectively truncate all types of linearly dispersive materials. The unification of the algorithm is achieved by employing a general form of the medium permittivity that includes three types of dielectric response functions, known as the Debye, Lorentz, and Drude response functions, as particular cases. We demonstrate the versatility and flexibility of the new formulation by implementing a single FDTD code to simulate absorption of electromagnetic pulse inside a medium that is adjacent to dispersive materials described by different dispersion models. The proposed algorithm can also be used for simulations of optical phenomena in metamaterials and materials exhibiting negative refractive indices.
Evaluation of a thin-slot formalism for finite-difference time-domain electromagnetics codes
Turner, C.D.; Bacon, L.D.
1987-03-01
A thin-slot formalism for use with finite-difference time-domain (FDTD) electromagnetics codes has been evaluated in both two and three dimensions. This formalism allows narrow slots to be modeled in the wall of a scatterer without reducing the space grid size to the gap width. In two dimensions, the evaluation involves the calculation of the total fields near two infinitesimally thin coplanar strips separated by a gap. A method-of-moments (MoM) solution of the same problem is used as a benchmark for comparison. Results in two dimensions show that up to 10% error can be expected in total electric and magnetic fields both near (lambda/40) and far (1 lambda) from the slot. In three dimensions, the evaluation is similar. The finite-length slot is placed in a finite plate and an MoM surface patch solution is used for the benchmark. These results, although less extensive than those in two dimensions, show that slightly larger errors can be expected. Considering the approximations made near the slot in incorporating the formalism, the results are very promising. Possibilities also exist for applying this formalism to walls of arbitrary thickness and to other types of slots, such as overlapping joints. 11 refs., 25 figs., 6 tabs.
Transfer-matrix approach for finite-difference time-domain simulation of periodic structures.
Deinega, Alexei; Belousov, Sergei; Valuev, Ilya
2013-11-01
Optical properties of periodic structures can be calculated using the transfer-matrix approach, which establishes a relation between amplitudes of the wave incident on a structure with transmitted or reflected waves. The transfer matrix can be used to obtain transmittance and reflectance spectra of finite periodic structures as well as eigenmodes of infinite structures. Traditionally, calculation of the transfer matrix is performed in the frequency domain and involves linear algebra. In this work, we present a technique for calculation of the transfer matrix using the finite-difference time-domain (FDTD) method and show the way of its implementation in FDTD code. To illustrate the performance of our technique we calculate the transmittance spectra for opal photonic crystal slabs consisting of multiple layers of spherical scatterers. Our technique can be used for photonic band structure calculations. It can also be combined with existing FDTD methods for the analysis of periodic structures at an oblique incidence, as well as for modeling point sources in a periodic environment.
Transfer-matrix approach for finite-difference time-domain simulation of periodic structures
NASA Astrophysics Data System (ADS)
Deinega, Alexei; Belousov, Sergei; Valuev, Ilya
2013-11-01
Optical properties of periodic structures can be calculated using the transfer-matrix approach, which establishes a relation between amplitudes of the wave incident on a structure with transmitted or reflected waves. The transfer matrix can be used to obtain transmittance and reflectance spectra of finite periodic structures as well as eigenmodes of infinite structures. Traditionally, calculation of the transfer matrix is performed in the frequency domain and involves linear algebra. In this work, we present a technique for calculation of the transfer matrix using the finite-difference time-domain (FDTD) method and show the way of its implementation in FDTD code. To illustrate the performance of our technique we calculate the transmittance spectra for opal photonic crystal slabs consisting of multiple layers of spherical scatterers. Our technique can be used for photonic band structure calculations. It can also be combined with existing FDTD methods for the analysis of periodic structures at an oblique incidence, as well as for modeling point sources in a periodic environment.
Simulation of optical devices using parallel finite-difference time-domain method
NASA Astrophysics Data System (ADS)
Li, Kang; Kong, Fanmin; Mei, Liangmo; Liu, Xin
2005-11-01
This paper presents a new parallel finite-difference time-domain (FDTD) numerical method in a low-cost network environment to stimulate optical waveguide characteristics. The PC motherboard based cluster is used, as it is relatively low-cost, reliable and has high computing performance. Four clusters are networked by fast Ethernet technology. Due to the simplicity nature of FDTD algorithm, a native Ethernet packet communication mechanism is used to reduce the overhead of the communication between the adjacent clusters. To validate the method, a microcavity ring resonator based on semiconductor waveguides is chosen as an instance of FDTD parallel computation. Speed-up rate under different division density is calculated. From the result we can conclude that when the decomposing size reaches a certain point, a good parallel computing speed up will be maintained. This simulation shows that through the overlapping of computation and communication method and controlling the decomposing size, the overhead of the communication of the shared data will be conquered. The result indicates that the implementation can achieve significant speed up for the FDTD algorithm. This will enable us to tackle the larger real electromagnetic problem by the low-cost PC clusters.
Finite-difference time-domain approach to acoustic radiation force problems
NASA Astrophysics Data System (ADS)
Silva, Glauber T.
2005-09-01
Acoustic radiation force plays a major role in elastography methods such as vibro-acoustography, acoustic radiation force, shear wave elasticity, and supersonic shear wave imaging. The radiation force (dynamic or static) exerted on an object by an incident wave can be obtained by solving the acoustic scattering problem for the object. However, only in rather simple cases the scattering of waves can be described by exact analytical expressions. In this work, we developed an algorithm based on the finite-difference time-domain (FDTD) method to compute the radiation force exerted on arbitrary shaped objects. The algorithm simulates the wave propagation in a finite extended medium with an embedded object. The radiation force is obtained by numerically calculating a surface integral of the momentum flux, which depends on the incident and scattered fields. Absorbing boundary conditions are used to truncate the medium. We compute the radiation force exerted on a rigid and soft cylinder by a plane wave. Results are in agreement with the theoretical predictions. Discrepancies due to numerical dispersion in the algorithm are under investigation. The presented method might be used to calculate the radiation force on complex objects present in elastography techniques. [Work supported by FAPEAL/CNPq, Brazil.
Light Scattering by Gaussian Particles: A Solution with Finite-Difference Time Domain Technique
NASA Technical Reports Server (NTRS)
Sun, W.; Nousiainen, T.; Fu, Q.; Loeb, N. G.; Videen, G.; Muinonen, K.
2003-01-01
The understanding of single-scattering properties of complex ice crystals has significance in atmospheric radiative transfer and remote-sensing applications. In this work, light scattering by irregularly shaped Gaussian ice crystals is studied with the finite-difference time-domain (FDTD) technique. For given sample particle shapes and size parameters in the resonance region, the scattering phase matrices and asymmetry factors are calculated. It is found that the deformation of the particle surface can significantly smooth the scattering phase functions and slightly reduce the asymmetry factors. The polarization properties of irregular ice crystals are also significantly different from those of spherical cloud particles. These FDTD results could provide a reference for approximate light-scattering models developed for irregular particle shapes and can have potential applications in developing a much simpler practical light scattering model for ice clouds angular-distribution models and for remote sensing of ice clouds and aerosols using polarized light. (copyright) 2003 Elsevier Science Ltd. All rights reserved.
High-performance finite-difference time-domain simulations of C-Mod and ITER RF antennas
Jenkins, Thomas G. Smithe, David N.
2015-12-10
Finite-difference time-domain methods have, in recent years, developed powerful capabilities for modeling realistic ICRF behavior in fusion plasmas [1, 2, 3, 4]. When coupled with the power of modern high-performance computing platforms, such techniques allow the behavior of antenna near and far fields, and the flow of RF power, to be studied in realistic experimental scenarios at previously inaccessible levels of resolution. In this talk, we present results and 3D animations from high-performance FDTD simulations on the Titan Cray XK7 supercomputer, modeling both Alcator C-Mod’s field-aligned ICRF antenna and the ITER antenna module. Much of this work focuses on scans over edge density, and tailored edge density profiles, to study dispersion and the physics of slow wave excitation in the immediate vicinity of the antenna hardware and SOL. An understanding of the role of the lower-hybrid resonance in low-density scenarios is emerging, and possible implications of this for the NSTX launcher and power balance are also discussed. In addition, we discuss ongoing work centered on using these simulations to estimate sputtering and impurity production, as driven by the self-consistent sheath potentials at antenna surfaces.
High-performance finite-difference time-domain simulations of C-Mod and ITER RF antennas
NASA Astrophysics Data System (ADS)
Jenkins, Thomas G.; Smithe, David N.
2015-12-01
Finite-difference time-domain methods have, in recent years, developed powerful capabilities for modeling realistic ICRF behavior in fusion plasmas [1, 2, 3, 4]. When coupled with the power of modern high-performance computing platforms, such techniques allow the behavior of antenna near and far fields, and the flow of RF power, to be studied in realistic experimental scenarios at previously inaccessible levels of resolution. In this talk, we present results and 3D animations from high-performance FDTD simulations on the Titan Cray XK7 supercomputer, modeling both Alcator C-Mod's field-aligned ICRF antenna and the ITER antenna module. Much of this work focuses on scans over edge density, and tailored edge density profiles, to study dispersion and the physics of slow wave excitation in the immediate vicinity of the antenna hardware and SOL. An understanding of the role of the lower-hybrid resonance in low-density scenarios is emerging, and possible implications of this for the NSTX launcher and power balance are also discussed. In addition, we discuss ongoing work centered on using these simulations to estimate sputtering and impurity production, as driven by the self-consistent sheath potentials at antenna surfaces.
Use of the finite-difference time-domain method in electromagnetic dosimetry
Sullivan, D.M.
1987-01-01
Although there are acceptable methods for calculating whole body electromagnetic absorption, no completely acceptable method for calculating the local specific absorption rate (SAR) at points within the body has been developed. Frequency domain methods, such as the method of moments (MoM) have achieved some success; however, the MoM requires computer storage on the order of (3N)/sup 2/, and computation time on the order of (3N)/sup 3/ where N is the number of cells. The finite-difference time-domain (FDTD) method has been employed extensively in calculating the scattering from metallic objects, and recently is seeing some use in calculating the interaction of EM fields with complex, lossy dielectric bodies. Since the FDTD method has storage and time requirements proportional to N, it presents an attractive alternative to calculating SAR distribution in large bodies. This dissertation describes the FDTD method and evaluates it by comparing its results with analytic solutions in 2 and 3 dimensions. The results obtained demonstrate that the FDTD method is capable of calculating internal SAR distribution with acceptable accuracy. The construction of a data base to provide detailed, inhomogeneous man models for use with the FDTD method is described. Using this construction method, a model of 40,000 1.31 cm. cells is developed for use at 350 MHz, and another model consisting of 5000 2.62 cm. cells is developed for use at 100 MHz. To add more realism to the problem, a ground plane is added to the FDTD software. The needed changes to the software are described, along with a test which confirms its accuracy. Using the CRAY II supercomputer, SAR distributions in human models are calculated using incident frequencies of 100 MHz and 350 MHz for three different cases: (1) A homogeneous man model in free space, (2) an inhomogeneous man model in free space, and (3) an inhomogeneous man model standing on a ground plane.
Turovets, Sergei; Volkov, Vasily; Zherdetsky, Aleksej; Prakonina, Alena; Malony, Allen D
2014-01-01
The Electrical Impedance Tomography (EIT) and electroencephalography (EEG) forward problems in anisotropic inhomogeneous media like the human head belongs to the class of the three-dimensional boundary value problems for elliptic equations with mixed derivatives. We introduce and explore the performance of several new promising numerical techniques, which seem to be more suitable for solving these problems. The proposed numerical schemes combine the fictitious domain approach together with the finite-difference method and the optimally preconditioned Conjugate Gradient- (CG-) type iterative method for treatment of the discrete model. The numerical scheme includes the standard operations of summation and multiplication of sparse matrices and vector, as well as FFT, making it easy to implement and eligible for the effective parallel implementation. Some typical use cases for the EIT/EEG problems are considered demonstrating high efficiency of the proposed numerical technique.
NASA Technical Reports Server (NTRS)
Bland, S. R.
1982-01-01
Finite difference methods for unsteady transonic flow frequency use simplified equations in which certain of the time dependent terms are omitted from the governing equations. Kernel functions are derived for two dimensional subsonic flow, and provide accurate solutions of the linearized potential equation with the same time dependent terms omitted. These solutions make possible a direct evaluation of the finite difference codes for the linear problem. Calculations with two of these low frequency kernel functions verify the accuracy of the LTRAN2 and HYTRAN2 finite difference codes. Comparisons of the low frequency kernel function results with the Possio kernel function solution of the complete linear equations indicate the adequacy of the HYTRAN approximation for frequencies in the range of interest for flutter calculations.
NASA Technical Reports Server (NTRS)
1997-01-01
Butler Hine, former director of the Intelligent Mechanism Group (IMG) at Ames Research Center, and five others partnered to start Fourth Planet, Inc., a visualization company that specializes in the intuitive visual representation of dynamic, real-time data over the Internet and Intranet. Over a five-year period, the then NASA researchers performed ten robotic field missions in harsh climes to mimic the end- to-end operations of automated vehicles trekking across another world under control from Earth. The core software technology for these missions was the Virtual Environment Vehicle Interface (VEVI). Fourth Planet has released VEVI4, the fourth generation of the VEVI software, and NetVision. VEVI4 is a cutting-edge computer graphics simulation and remote control applications tool. The NetVision package allows large companies to view and analyze in virtual 3D space such things as the health or performance of their computer network or locate a trouble spot on an electric power grid. Other products are forthcoming. Fourth Planet is currently part of the NASA/Ames Technology Commercialization Center, a business incubator for start-up companies.
Double absorbing boundaries for finite-difference time-domain electromagnetics
NASA Astrophysics Data System (ADS)
LaGrone, John; Hagstrom, Thomas
2016-12-01
We describe the implementation of optimal local radiation boundary condition sequences for second order finite difference approximations to Maxwell's equations and the scalar wave equation using the double absorbing boundary formulation. Numerical experiments are presented which demonstrate that the design accuracy of the boundary conditions is achieved and, for comparable effort, exceeds that of a convolution perfectly matched layer with reasonably chosen parameters. An advantage of the proposed approach is that parameters can be chosen using an accurate a priori error bound.
Real-time monitoring of 3D cell culture using a 3D capacitance biosensor.
Lee, Sun-Mi; Han, Nalae; Lee, Rimi; Choi, In-Hong; Park, Yong-Beom; Shin, Jeon-Soo; Yoo, Kyung-Hwa
2016-03-15
Three-dimensional (3D) cell cultures have recently received attention because they represent a more physiologically relevant environment compared to conventional two-dimensional (2D) cell cultures. However, 2D-based imaging techniques or cell sensors are insufficient for real-time monitoring of cellular behavior in 3D cell culture. Here, we report investigations conducted with a 3D capacitance cell sensor consisting of vertically aligned pairs of electrodes. When GFP-expressing human breast cancer cells (GFP-MCF-7) encapsulated in alginate hydrogel were cultured in a 3D cell culture system, cellular activities, such as cell proliferation and apoptosis at different heights, could be monitored non-invasively and in real-time by measuring the change in capacitance with the 3D capacitance sensor. Moreover, we were able to monitor cell migration of human mesenchymal stem cells (hMSCs) with our 3D capacitance sensor.
Ames Lab 101: Real-Time 3D Imaging
Zhang, Song
2010-01-01
Ames Laboratory scientist Song Zhang explains his real-time 3-D imaging technology. The technique can be used to create high-resolution, real-time, precise, 3-D images for use in healthcare, security, and entertainment applications.
Ames Lab 101: Real-Time 3D Imaging
Zhang, Song
2016-07-12
Ames Laboratory scientist Song Zhang explains his real-time 3-D imaging technology. The technique can be used to create high-resolution, real-time, precise, 3-D images for use in healthcare, security, and entertainment applications.
Study of two-dimensional transient cavity fields using the finite-difference time-domain technique
Crisp, J.L.
1988-06-01
This work is intended to be a study into the application of the finite-difference time-domain, or FD-TD technique, to some of the problems faced by designers of equipment used in modern accelerators. In particular it discusses using the FD-TD algorithm to study the field distribution of a simple two-dimensional cavity in both space and time. 18 refs.
NASA Technical Reports Server (NTRS)
Kaul, Upender K. (Inventor)
2009-01-01
Modeling and simulation of free and forced structural vibrations is essential to an overall structural health monitoring capability. In the various embodiments, a first principles finite-difference approach is adopted in modeling a structural subsystem such as a mechanical gear by solving elastodynamic equations in generalized curvilinear coordinates. Such a capability to generate a dynamic structural response is widely applicable in a variety of structural health monitoring systems. This capability (1) will lead to an understanding of the dynamic behavior of a structural system and hence its improved design, (2) will generate a sufficiently large space of normal and damage solutions that can be used by machine learning algorithms to detect anomalous system behavior and achieve a system design optimization and (3) will lead to an optimal sensor placement strategy, based on the identification of local stress maxima all over the domain.
NASA Astrophysics Data System (ADS)
Chun, Kyungwon; Kim, Huioon; Hong, Hyunpyo; Chung, Youngjoo
GMES which stands for GIST Maxwell's Equations Solver is a Python package for a Finite-Difference Time-Domain (FDTD) simulation. The FDTD method widely used for electromagnetic simulations is an algorithm to solve the Maxwell's equations. GMES follows Object-Oriented Programming (OOP) paradigm for the good maintainability and usability. With the several optimization techniques along with parallel computing environment, we could make the fast and interactive implementation. Execution speed has been tested in a single host and Beowulf class cluster. GMES is open source and available on the web (http://www.sf.net/projects/gmes).
Sprague, Mark W; Luczkovich, Joseph J
2016-01-01
This finite-difference time domain (FDTD) model for sound propagation in very shallow water uses pressure and velocity grids with both 3-dimensional Cartesian and 2-dimensional cylindrical implementations. Parameters, including water and sediment properties, can vary in each dimension. Steady-state and transient signals from discrete and distributed sources, such as the surface of a vibrating pile, can be used. The cylindrical implementation uses less computation but requires axial symmetry. The Cartesian implementation allows asymmetry. FDTD calculations compare well with those of a split-step parabolic equation. Applications include modeling the propagation of individual fish sounds, fish aggregation sounds, and distributed sources.
NASA Technical Reports Server (NTRS)
Yefet, Amir; Petropoulos, Peter G.
1999-01-01
We consider a divergence-free non-dissipative fourth-order explicit staggered finite difference scheme for the hyperbolic Maxwell's equations. Special one-sided difference operators are derived in order to implement the scheme near metal boundaries and dielectric interfaces. Numerical results show the scheme is long-time stable, and is fourth-order convergent over complex domains that include dielectric interfaces and perfectly conducting surfaces. We also examine the scheme's behavior near metal surfaces that are not aligned with the grid axes, and compare its accuracy to that obtained by the Yee scheme.
Finite-difference time-domain methods to analyze ytterbium-doped Q-switched fiber lasers.
Hattori, Haroldo T; Khaleque, Abdul
2016-03-01
Q-switched lasers are widely used in material processing, laser ranging, medicine, and nonlinear optics--in particular, Q-switched lasers in optical fibers are important since they cannot only generate high peak powers but can also concentrate high peak powers in small areas. In this paper, we present new finite-difference time-domain methods that analyze the dynamics of Q-switched fiber lasers, which are more flexible and robust than previous methods. We extend the method to analyze fiber ring lasers and compare the results with our experiments.
Accurate Finite Difference Algorithms
NASA Technical Reports Server (NTRS)
Goodrich, John W.
1996-01-01
Two families of finite difference algorithms for computational aeroacoustics are presented and compared. All of the algorithms are single step explicit methods, they have the same order of accuracy in both space and time, with examples up to eleventh order, and they have multidimensional extensions. One of the algorithm families has spectral like high resolution. Propagation with high order and high resolution algorithms can produce accurate results after O(10(exp 6)) periods of propagation with eight grid points per wavelength.
Temporal and spatial inconsistencies of time-split finite-difference schemes
NASA Technical Reports Server (NTRS)
Dwoyer, D. L.; Thames, F. C.
1981-01-01
The properties of an implicit time-split algorithm, which utilizes locally one dimensional spatial steps, are examined using the two-dimensional heat conduction equation as the test problem. Both temporal and spatial inconsistencies inherent in the scheme are identified. A consistent, implicit splitting approach is developed. The relationship between this method and other time-split implicit schemes is explained, and stability problems encountered with the method in three dimensions are discussed.
Finite difference time domain electromagnetic scattering from frequency-dependent lossy materials
NASA Technical Reports Server (NTRS)
Luebbers, Raymond J.; Beggs, John H.
1991-01-01
Four different FDTD computer codes and companion Radar Cross Section (RCS) conversion codes on magnetic media are submitted. A single three dimensional dispersive FDTD code for both dispersive dielectric and magnetic materials was developed, along with a user's manual. The extension of FDTD to more complicated materials was made. The code is efficient and is capable of modeling interesting radar targets using a modest computer workstation platform. RCS results for two different plate geometries are reported. The FDTD method was also extended to computing far zone time domain results in two dimensions. Also the capability to model nonlinear materials was incorporated into FDTD and validated.
Prospects for Finite-Difference Time-Domain (FDTD) Computational Electrodynamics
NASA Astrophysics Data System (ADS)
Taflove, Allen
2002-08-01
FDTD is the most powerful numerical solution of Maxwell's equations for structures having internal details. Relative to moment-method and finite-element techniques, FDTD can accurately model such problems with 100-times more field unknowns and with nonlinear and/or time-variable parameters. Hundreds of FDTD theory and applications papers are published each year. Currently, there are at least 18 commercial FDTD software packages for solving problems in: defense (especially vulnerability to electromagnetic pulse and high-power microwaves); design of antennas and microwave devices/circuits; electromagnetic compatibility; bioelectromagnetics (especially assessment of cellphone-generated RF absorption in human tissues); signal integrity in computer interconnects; and design of micro-photonic devices (especially photonic bandgap waveguides, microcavities; and lasers). This paper explores emerging prospects for FDTD computational electromagnetics brought about by continuing advances in computer capabilities and FDTD algorithms. We conclude that advances already in place point toward the usage by 2015 of ultralarge-scale (up to 1E11 field unknowns) FDTD electromagnetic wave models covering the frequency range from about 0.1 Hz to 1E17 Hz. We expect that this will yield significant benefits for our society in areas as diverse as computing, telecommunications, defense, and public health and safety.
Real time 3D and heterogeneous data fusion
Little, C.Q.; Small, D.E.
1998-03-01
This project visualizes characterization data in a 3D setting, in real time. Real time in this sense means collecting the data and presenting it before it delays the user, and processing faster than the acquisition systems so no bottlenecks occur. The goals have been to build a volumetric viewer to display 3D data, demonstrate projecting other data, such as images, onto the 3D data, and display both the 3D and projected images as fast as the data became available. The authors have examined several ways to display 3D surface data. The most effective was generating polygonal surface meshes. They have created surface maps form a continuous stream of 3D range data, fused image data onto the geometry, and displayed the data with a standard 3D rendering package. In parallel with this, they have developed a method to project real-time images onto the surface created. A key component is mapping the data on the correct surfaces, which requires a-priori positional information along with accurate calibration of the camera and lens system.
NASA Astrophysics Data System (ADS)
Zhang, Di; Capoglu, Ilker; Li, Yue; Cherkezyan, Lusik; Chandler, John; Spicer, Graham; Subramanian, Hariharan; Taflove, Allen; Backman, Vadim
2016-06-01
Combining finite-difference time-domain (FDTD) methods and modeling of optical microscopy modalities, we previously developed an open-source software package called Angora, which is essentially a "microscope in a computer." However, the samples being simulated were limited to nondispersive media. Since media dispersions are common in biological samples (such as cells with staining and metallic biomarkers), we have further developed a module in Angora to simulate samples having complicated dispersion properties, thereby allowing the synthesis of microscope images of most biological samples. We first describe a method to integrate media dispersion into FDTD, and we validate the corresponding Angora dispersion module by applying Mie theory, as well as by experimentally imaging gold microspheres. Then, we demonstrate how Angora can facilitate the development of optical imaging techniques with a case study.
Silva, F. da
2008-10-15
The EU will supply the plasma position reflectometer for ITER. The system will have channels located at different poloidal positions, some of them obliquely viewing a plasma which has a poloidal density divergence and curvature, both adverse conditions for profile measurements. To understand the impact of such topology in the reconstruction of density profiles a full-wave two-dimensional finite-difference time domain O-mode code with the capability for frequency sweep was used. Simulations show that the reconstructed density profiles still meet the ITER radial accuracy specifications for plasma position (1 cm), except for the highest densities. Other adverse effects such as multireflections induced by the blanket, density fluctuations, and MHD activity were considered and a first understanding on their impact obtained.
NASA Astrophysics Data System (ADS)
Huang, Shi-Hao; Wang, Shiang-Jiu; Tseng, Snow H.
2015-03-01
Optical coherence tomography (OCT) provides high resolution, cross-sectional image of internal microstructure of biological tissue. We use the Finite-Difference Time-Domain method (FDTD) to analyze the data acquired by OCT, which can help us reconstruct the refractive index of the biological tissue. We calculate the refractive index tomography and try to match the simulation with the data acquired by OCT. Specifically, we try to reconstruct the structure of melanin, which has complex refractive indices and is the key component of human pigment system. The results indicate that better reconstruction can be achieved for homogenous sample, whereas the reconstruction is degraded for samples with fine structure or with complex interface. Simulation reconstruction shows structures of the Melanin that may be useful for biomedical optics applications.
NASA Astrophysics Data System (ADS)
Ojima, Masayoshi; Ogawa, Yasuhiro; Ozaki, Ryotaro; Moritake, Hiroshi; Yoshida, Hiroyuki; Fujii, Akihiko; Ozaki, Masanori
2010-03-01
The photonic band structure and circular-polarization dependence of the transmission properties of cholesteric blue phase II were analyzed using a finite-difference time-domain method based on a double-twist cylinder model. The polarization dependence of the calculated band structure was not recognized in the same manner as that in previous studies. However, it can be clearly observed that the calculated transmission spectra depend on the circular polarization; this result agrees well with experimental results. On the basis of the circular-polarization dependence of the transmission spectra in the case of a thick sample, it can be indicated that a total reflection band appears in the selective reflection band.
NASA Technical Reports Server (NTRS)
Vinh, Hoang; Dwyer, Harry A.; Van Dam, C. P.
1992-01-01
The applications of two CFD-based finite-difference methods to computational electromagnetics are investigated. In the first method, the time-domain Maxwell's equations are solved using the explicit Lax-Wendroff scheme and in the second method, the second-order wave equations satisfying the Maxwell's equations are solved using the implicit Crank-Nicolson scheme. The governing equations are transformed to a generalized curvilinear coordinate system and solved on a body-conforming mesh using the scattered-field formulation. The induced surface current and the bistatic radar cross section are computed and the results are validated for several two-dimensional test cases involving perfectly-conducting scatterers submerged in transverse-magnetic plane waves.
Aldridge, David Franklin; Collier, Sandra L.; Marlin, David H.; Ostashev, Vladimir E.; Symons, Neill Phillip; Wilson, D. Keith
2005-05-01
This document is intended to serve as a users guide for the time-domain atmospheric acoustic propagation suite (TDAAPS) program developed as part of the Department of Defense High-Performance Modernization Office (HPCMP) Common High-Performance Computing Scalable Software Initiative (CHSSI). TDAAPS performs staggered-grid finite-difference modeling of the acoustic velocity-pressure system with the incorporation of spatially inhomogeneous winds. Wherever practical the control structure of the codes are written in C++ using an object oriented design. Sections of code where a large number of calculations are required are written in C or F77 in order to enable better compiler optimization of these sections. The TDAAPS program conforms to a UNIX style calling interface. Most of the actions of the codes are controlled by adding flags to the invoking command line. This document presents a large number of examples and provides new users with the necessary background to perform acoustic modeling with TDAAPS.
NASA Astrophysics Data System (ADS)
Lu, Jia; Zhou, Huaichun
2016-09-01
To deal with the staircase approximation problem in the standard finite-difference time-domain (FDTD) simulation, the two-dimensional boundary condition equations (BCE) method is proposed in this paper. In the BCE method, the standard FDTD algorithm can be used as usual, and the curved surface is treated by adding the boundary condition equations. Thus, while maintaining the simplicity and computational efficiency of the standard FDTD algorithm, the BCE method can solve the staircase approximation problem. The BCE method is validated by analyzing near field and far field scattering properties of the PEC and dielectric cylinders. The results show that the BCE method can maintain a second-order accuracy by eliminating the staircase approximation errors. Moreover, the results of the BCE method show good accuracy for cylinder scattering cases with different permittivities. Project supported by the National Natural Science Foundation of China (Grant No. 51025622).
NASA Astrophysics Data System (ADS)
Nagatani, Yoshiki; Imaizumi, Hirotaka; Fukuda, Takashi; Matsukawa, Mami; Watanabe, Yoshiaki; Otani, Takahiko
2006-09-01
In cancellous bone, longitudinal waves often separate into fast and slow waves depending on the alignment of bone trabeculae. This interesting phenomenon becomes an effective tool for the diagnosis of osteoporosis because wave propagation behavior depends on the bone structure. We have, therefore, simulated wave propagation in such a complex medium by the finite-difference time-domain (FDTD) method, using a three-dimensional X-ray computer tomography (CT) model of an actual cancellous bone. In this simulation, experimentally observed acoustic constants of the cortical bone were adopted. As a result, the generation of fast and slow waves was confirmed. The speed of fast waves and the amplitude of slow waves showed good correlations with the bone volume fraction. The simulated results were also compared with the experimental results obtained from the identical cancellous bone.
Coomar, Arunima; Arntsen, Christopher; Lopata, Kenneth A; Pistinner, Shlomi; Neuhauser, Daniel
2011-08-28
We develop near-field (NF), a very efficient finite-difference time-dependent (FDTD) approach for simulating electromagnetic systems in the near-field regime. NF is essentially a time-dependent version of the quasistatic frequency-dependent Poisson algorithm. We assume that the electric field is longitudinal, and hence propagates only a set of time-dependent polarizations and currents. For near-field scales, the time step (dt) is much larger than in the usual Maxwell FDTD approach, as it is not related to the velocity of light; rather, it is determined by the rate of damping and plasma oscillations in the material, so dt = 2.5 a.u. was well converged in our simulations. The propagation in time is done via a leapfrog algorithm much like Yee's method, and only a single spatial convolution is needed per time step. In conjunction, we also develop a new and very accurate 8 and 9 Drude-oscillators fit to the permittivity of gold and silver, desired here because we use a large time step. We show that NF agrees with Mie-theory in the limit of small spheres and that it also accurately describes the evolution of the spectral shape as a function of the separation between two gold or silver spheres. The NF algorithm is especially efficient for systems with small scale dynamics and makes it very simple to introduce additional effects such as embedding.
NASA Astrophysics Data System (ADS)
Cole, James B.
2014-09-01
The finite difference time domain (FDTD) algorithm is a popular tool for photonics design and simulations, but it also can yield deep insights into the fundamental nature of light and - more speculatively - into the discretization and connectivity and geometry of space-time. The CFL stability limit in FDTD can be interpreted as a limit on the speed of light. It depends not only on the dimensionality of space-time, but also on its connectivity. Thus the speed of light not only tells us something about the dimensionality of space-time but also about its connectivity. The computational molecule in conventional 2-D FDTD is (х +/- h,y)-(x,+/- y h)-(x-y), where h= triangle x = triangle y . It yields the CFL stability limit ctriangle/h<= t/h 1 √2 . Including diagonal nodes (x+/- h, y +/- h) in the computational molecule changes the connectivity of the space and changes the CFL limit. The FDTD model also predicts precursor signals (which physically exist). The Green's function of the FDTD model, which differs from that of the wave equation, may tell us something about underlying periodicities in space-time. It may be possible to experimentally observe effects of space-time discretization and connectivity in optics experiments.
NASA Astrophysics Data System (ADS)
Beker, B.
1992-12-01
Numerical modeling of electromagnetic (EM) interaction is normally performed by using either differential or integral equation methods. Both techniques can be implemented to solve problems in frequency or time domain. The method of moments (MOM) approach to solving integral equations has matured to the point where it can be used to solve complex problems. In the past, MOM has only been applied to scattering and radiation problems involving perfectly conducting or isotropic penetrable, lossy or lossless objects. However, many materials, (e.g., composites that are used on the Navy's surface ships in practical applications) exhibit anisotropic properties. To account for these new effects, several integral equation formulations for scattering and radiation by anisotropic objects have been developed recently. The differential equation approach to EM interaction studies has seen the emergence of the finite-difference time-domain (FD-TD) method as the method of choice in many of today's scattering and radiation applications. This approach has been applied to study transient as well as steady-state scattering from many complex structures, radiation from wire antennas, and coupling into wires through narrow apertures in conducting cavities. It is important to determine whether or not, and how effectively, the FD-TD can be used to solve EM interaction problems of interest to the Navy, such as investigating potential EM interference in shipboard communication systems. Consequently, this report partly addresses this issue by dealing exclusively with FD-TD modeling of time-domain EM scattering and radiation.
NASA Astrophysics Data System (ADS)
Maryana, Okky Fajar Tri; Hidayat, Rahmat
2016-08-01
Finite Difference Time Domain (FDTD) method has been much employed for studying light propagation in various structures, from simple one-dimensional structures up to three-dimensional complex structures. One of challenging problems is to implement this method for the case of light propagation in amplifying medium or structures, such as optical amplifier and lasers. The implementation is hindered by the fact that the dielectric constant becomes a complex number when optical gain parameter is involved in the calculation. In general, complex dielectric constant is related to complex susceptibility, in which the imaginary part is related to optical gain. Here, we then modify the formulation for updating electric field in the calculation algorithm. Using this approach, we then finally can calculate light amplification in laser active medium of Nd3+ ion doped glass. The calculation result shows an agreement with the result from the calculation using differential equation for intensity. Although this method is more time consuming, the method seem promising for optical complex micro- and nano-structures, such quantum dot lasers, micro-ring lasers, etc.
NASA Astrophysics Data System (ADS)
Wei, Xiao-Kun; Shao, Wei; Shi, Sheng-Bing; Zhang, Yong; Wang, Bing-Zhong
2015-07-01
An efficient conformal locally one-dimensional finite-difference time-domain (LOD-CFDTD) method is presented for solving two-dimensional (2D) electromagnetic (EM) scattering problems. The formulation for the 2D transverse-electric (TE) case is presented and its stability property and numerical dispersion relationship are theoretically investigated. It is shown that the introduction of irregular grids will not damage the numerical stability. Instead of the staircasing approximation, the conformal scheme is only employed to model the curve boundaries, whereas the standard Yee grids are used for the remaining regions. As the irregular grids account for a very small percentage of the total space grids, the conformal scheme has little effect on the numerical dispersion. Moreover, the proposed method, which requires fewer arithmetic operations than the alternating-direction-implicit (ADI) CFDTD method, leads to a further reduction of the CPU time. With the total-field/scattered-field (TF/SF) boundary and the perfectly matched layer (PML), the radar cross section (RCS) of two 2D structures is calculated. The numerical examples verify the accuracy and efficiency of the proposed method. Project supported by the National Natural Science Foundation of China (Grant Nos. 61331007 and 61471105).
Riley, D.J.
1993-04-01
A technique to integrate a dense, locally non-uniform mesh into finite-difference time-domain (FDTD) codes is presented. The method is designed for the full-wave analysis of multi-material layers that are physically thin, but perhaps electrically thick. Such layers are often used for the purpose of suppressing electromagnetic reflections from conducting surfaces. Throughout the non-uniform local mesh, average values for the conductivity and permittivity are used, where as variations in permeability are accommodated by splitting H-field line integrals and enforcing continuity of the normal B field. A unique interpolation scheme provides accuracy and late-time stability for mesh discontinuities as large as 1000 to 1. Application is made to resistive sheets, the absorbing Salisbury screen, crosstalk on printed circuit boards, and apertures that are narrow both in width and depth with regard to a uniform cell. Where appropriate, comparisons are made with the MoM code CARLOS and transmission-line theory. The hybrid mesh formulation has been highly optimized for both vector and parallel-processing on Cray YMP architectures.
Coherent structures in 3D viscous time-periodic flow
NASA Astrophysics Data System (ADS)
Znaien, J. G.; Speetjens, M. F. M.; Trieling, R. R.; Clercx, H. J. H.
2010-11-01
Periodically driven laminar flows occur in many industrial processes from food-mixing devices to micro-mixer in lab-on-a-chip systems. The present study is motivated by better understanding fundamental transport phenomena in three-dimensional viscous time-periodic flows. Both numerical simulation and three-dimensional Particle Tracking Velocimetry measurements are performed to investigate the 3D advection of a passive scalar in a lid-driven cylindrical cavity flow. The flow is forced by a time-periodic in-plane motion of one endwall via a given forcing protocol. We concentrate on the formation and interaction of coherent structures due to fluid inertia, which play an important role in 3D mixing by geometrically determining the tracer transport. The disintegration of these structures by fluid inertia reflects an essentially 3D route to chaos. Data from tracking experiments of small particles will be compared with predictions from numerical simulations on transport of passive tracers.
NASA Astrophysics Data System (ADS)
Yan, Hongyong; Yang, Lei; Liu, Hong
2015-06-01
Reverse-time migration (RTM) directly solves the two-way wave equation for wavefield propagation; therefore, how to solve the wave equation accurately and quickly is very important for RTM. The conventional staggered-grid finite-difference (SFD) operators are usually based on the Taylor-series expansion theory. If they are used to solve wave equation on a larger frequency content, a strong dispersion will occur, which directly affects the seismic image quality. In this paper, we propose an optimal SFD operator based on least squares to solve acoustic wave equation for prestack RTM, and obtain a new antidispersion RTM algorithm that can use short spatial difference operators. The synthetic and real data tests demonstrate that the least squares SFD (LSSFD) operator can mitigate the numerical dispersion, and the acoustic RTM using the LSSFD operator can effectively improve image quality comparing with that using the Taylor-series expansion SFD (TESFD) operator. Moreover, the LSSFD method can adopt a shorter spatial difference operator to reduce the computing cost.
Silva, F. da; Hacquin, S.
2005-03-01
We present a novel numerical signal injection technique allowing unidirectional injection of a wave in a wave-guiding structure, applicable to 2D finite-difference time-domain electromagnetic codes, both Maxwell and wave-equation. It is particularly suited to continuous wave radar-like simulations. The scheme gives an unidirectional injection of a signal while being transparent to waves propagating in the opposite direction (directional coupling). The reflected or backscattered waves (returned) are separated from the probing waves allowing direct access to the information on amplitude and phase of the returned wave. It also facilitates the signal processing used to extract the phase derivative (or group delay) when simulating radar systems. Although general, the technique is particularly suited to swept frequency sources (frequency modulated) in the context of reflectometry, a fusion plasma diagnostic. The UTS applications presented here are restricted to fusion plasma reflectometry simulations for different physical situations. This method can, nevertheless, also be used in other dispersive media such as dielectrics, being useful, for example, in the simulation of plasma filled waveguides or directional couplers.
NASA Technical Reports Server (NTRS)
Ryan, Deirdre A.; Luebbers, Raymond J.; Nguyen, Truong X.; Kunz, Karl S.; Steich, David J.
1992-01-01
Prediction of anechoic chamber performance is a difficult problem. Electromagnetic anechoic chambers exist for a wide range of frequencies but are typically very large when measured in wavelengths. Three dimensional finite difference time domain (FDTD) modeling of anechoic chambers is possible with current computers but at frequencies lower than most chamber design frequencies. However, two dimensional FDTD (2D-FTD) modeling enables much greater detail at higher frequencies and offers significant insight into compact anechoic chamber design and performance. A major subsystem of an anechoic chamber for which computational electromagnetic analyses exist is the reflector. First, an analysis of the quiet zone fields of a low frequency anechoic chamber produced by a uniform source and a reflector in two dimensions using the FDTD method is presented. The 2D-FDTD results are compared with results from a three dimensional corrected physical optics calculation and show good agreement. Next, a directional source is substituted for the uniform radiator. Finally, a two dimensional anechoic chamber geometry, including absorbing materials, is considered, and the 2D-FDTD results for these geometries appear reasonable.
NASA Technical Reports Server (NTRS)
Sun, W.; Loeb, N. G.; Tanev, S.; Videen, G.
2004-01-01
The two-dimensional (2-D) finite-difference time domain (FDTD) method is applied to calculate light scattering and absorption by an arbitrarily shaped infinite column embedded in an absorbing dielectric medium. A uniaxial perfectly matched layer (UPML) absorbing boundary condition (ABC) is used to truncate the computational domain. The single-scattering properties of the infinite column embedded in the absorbing medium, including scattering phase functions, extinction and absorption efficiencies, are derived using an area integration of the internal field. An exact solution for light scattering and absorption by a circular cylinder in an absorbing medium is used to examine the accuracy of the 2-D UPML FDTD code. With use of a cell size of 1/120 incident wavelength in the FDTD calculations, the errors in the extinction and absorption efficiencies and asymmetry factors from the 2-D UPML FDTD are generally smaller than approx .1%. The errors in the scattering phase functions are typically smaller than approx .4%. Using the 2-D UPML FDTD technique, light scattering and absorption by long noncircular columns embedded in absorbing media can be accurately solved.
NASA Astrophysics Data System (ADS)
Lo, F. S.; Lu, P. S.; Ragan-Kelley, B.; Minnich, A. J.; Lee, T. H.; Lin, M. C.; Verboncoeur, J. P.
2014-02-01
A thermionic energy converter (TEC) is a static device that converts heat directly into electricity by boiling electrons off a hot emitter surface across a small inter-electrode gap to a cooler collector surface. The main challenge in TECs is overcoming the space charge limit, which limits the current transmitted across a gap of a given voltage and width. We have verified the feasibility of studying and developing a TEC using a bounded finite-difference time-domain particle-in-cell plasma simulation code, OOPD1, developed by Plasma Theory and Simulation Group, formerly at UC Berkeley and now at Michigan State University. In this preliminary work, a TEC has been modeled kinetically using OOPD1, and the accuracy has been verified by comparing with an analytically solvable case, giving good agreement. With further improvement of the code, one will be able to quickly and cheaply analyze space charge effects, and seek designs that mitigate the space charge effect, allowing TECs to become more efficient and cost-effective.
Zhao, Huawei; Crozier, Stuart; Liu, Feng
2002-12-01
Numerical modeling of the eddy currents induced in the human body by the pulsed field gradients in MRI presents a difficult computational problem. It requires an efficient and accurate computational method for high spatial resolution analyses with a relatively low input frequency. In this article, a new technique is described which allows the finite difference time domain (FDTD) method to be efficiently applied over a very large frequency range, including low frequencies. This is not the case in conventional FDTD-based methods. A method of implementing streamline gradients in FDTD is presented, as well as comparative analyses which show that the correct source injection in the FDTD simulation plays a crucial rule in obtaining accurate solutions. In particular, making use of the derivative of the input source waveform is shown to provide distinct benefits in accuracy over direct source injection. In the method, no alterations to the properties of either the source or the transmission media are required. The method is essentially frequency independent and the source injection method has been verified against examples with analytical solutions. Results are presented showing the spatial distribution of gradient-induced electric fields and eddy currents in a complete body model.
Ibrahim, T S; Lee, R; Baertlein, B A; Yu, Y; Robitaille, P M
2000-09-01
In this work, a finite difference time domain (FDTD) algorithm is validated at 1.5 tesla using the standard GE Signa quadrature head coil and a muscle phantom. The electrical characteristics of the birdcage head coil are then calculated for the linear and quadrature cases. Unlike previous computational analysis which assume idealized currents on the end rings and the struts of the resonator, a complete computational analysis is provided. This treatment considers the coupling between the resonator and the sample and includes a real coil excitation, a complete current derivation, and a thorough description of both B(1) fields and RF radiation. With this improvement, electromagnetic phenomena such as radiation, standing wave currents on the wires, and field inhomogeneities due to interactions between the coil and the load inside the coil are observed. At 200 MHz, it is demonstrated that this particular coil does not work well due to radiation and non-uniformities on the struts of the device. Also, at this frequency magnetic field inhomogeneities become large when the coil is loaded with a phantom.
NASA Astrophysics Data System (ADS)
Large, Nicolas; Cao, Yang; Manjavacas, Alejandro; Nordlander, Peter
2015-03-01
Electron energy-loss spectroscopy (EELS) is a unique tool that is extensively used to investigate the plasmonic response of metallic nanostructures since the early works in the '50s. To be able to interpret and theoretically investigate EELS results, a myriad of different numerical techniques have been developed for EELS simulations (BEM, DDA, FEM, GDTD, Green dyadic functions). Although these techniques are able to predict and reproduce experimental results, they possess significant drawbacks and are often limited to highly symmetrical geometries, non-penetrating trajectories, small nanostructures, and free standing nanostructures. We present here a novel approach for EELS calculations using the Finite-difference time-domain (FDTD) method: EELS-FDTD. We benchmark our approach by direct comparison with results from the well-established boundary element method (BEM) and published experimental results. In particular, we compute EELS spectra for spherical nanoparticles, nanoparticle dimers, nanodisks supported by various substrates, and gold bowtie antennas on a silicon nitride substrate. Our EELS-FDTD implementation can be easily extended to more complex geometries and configurations and can be directly implemented within other numerical methods. Work funded by the Welch Foundation (C-1222, L-C-004), and the NSF (CNS-0821727, OCI-0959097).
VPython: Writing Real-time 3D Physics Programs
NASA Astrophysics Data System (ADS)
Chabay, Ruth
2001-06-01
VPython (http://cil.andrew.cmu.edu/projects/visual) combines the Python programming language with an innovative 3D graphics module called Visual, developed by David Scherer. Designed to make 3D physics simulations accessible to novice programmers, VPython allows the programmer to write a purely computational program without any graphics code, and produces an interactive realtime 3D graphical display. In a program 3D objects are created and their positions modified by computational algorithms. Running in a separate thread, the Visual module monitors the positions of these objects and renders them many times per second. Using the mouse, one can zoom and rotate to navigate through the scene. After one hour of instruction, students in an introductory physics course at Carnegie Mellon University, including those who have never programmed before, write programs in VPython to model the behavior of physical systems and to visualize fields in 3D. The Numeric array processing module allows the construction of more sophisticated simulations and models as well. VPython is free and open source. The Visual module is based on OpenGL, and runs on Windows, Linux, and Macintosh.
Real-time structured light intraoral 3D measurement pipeline
NASA Astrophysics Data System (ADS)
Gheorghe, Radu; Tchouprakov, Andrei; Sokolov, Roman
2013-02-01
Computer aided design and manufacturing (CAD/CAM) is increasingly becoming a standard feature and service provided to patients in dentist offices and denture manufacturing laboratories. Although the quality of the tools and data has slowly improved in the last years, due to various surface measurement challenges, practical, accurate, invivo, real-time 3D high quality data acquisition and processing still needs improving. Advances in GPU computational power have allowed for achieving near real-time 3D intraoral in-vivo scanning of patient's teeth. We explore in this paper, from a real-time perspective, a hardware-software-GPU solution that addresses all the requirements mentioned before. Moreover we exemplify and quantify the hard and soft deadlines required by such a system and illustrate how they are supported in our implementation.
NASA Astrophysics Data System (ADS)
Cassidy, Nigel J.; Millington, Tim M.
2009-04-01
Numerical modelling has recently established itself as an important, near-surface GPR interpretation tool with the finite-difference, time-domain (FDTD) method becoming one of the most popular techniques. Robust, flexible and accurate, the FDTD technique is capable of simulating GPR wave propagation in complex, three-dimensional, heterogeneous, lossy, subsurface environments to a high degree of realism. Unfortunately, many of the current FDTD methods still consider the subsurface materials as being 'non magnetic' and, as such, do not include the propagation and loss effects associated with magnetic materials (e.g., basic igneous rocks, iron-rich sands, corroded steel reinforced concrete, smelting wastes, etc). For magnetically lossy materials, the inclusion of a complex magnetic permeability into the FDTD scheme can result in smeared or 'fuzzy' interface problems, increased computational demand and equation-level coding changes. Therefore, it is prudent to describe the magnetically derived loss and propagation characteristics in a more generic manner where the 'electric' (e.g., permittivity and conductivity) properties of the material incorporate the magnetic loss effects explicitly. In this paper, we present a "generalised complex effective permittivity" approach to the FDTD material descriptors that allows for the true loss and propagation characteristics of the magnetic materials to modelled fully, regardless of their individual magnetic or electric field relaxation mechanisms. In doing so, we are able to incorporate the lossy, dispersive effects directly into existing FDTD schemes without modification, additional error or increased computational demand. To demonstrate its application, a three-dimensional, 450 MHz, near-surface model of GPR data simulation over a rusty pipe has been included that illustrates how the FDTD modelling can be used to evaluate subtle changes in the spectral nature of the reflected signals. The modelling results show that, for
NASA Astrophysics Data System (ADS)
Maesano, Francesco E.; D'Ambrogi, Chiara
2017-02-01
We present Vel-IO 3D, a tool for 3D velocity model creation and time-depth conversion, as part of a workflow for 3D model building. The workflow addresses the management of large subsurface dataset, mainly seismic lines and well logs, and the construction of a 3D velocity model able to describe the variation of the velocity parameters related to strong facies and thickness variability and to high structural complexity. Although it is applicable in many geological contexts (e.g. foreland basins, large intermountain basins), it is particularly suitable in wide flat regions, where subsurface structures have no surface expression. The Vel-IO 3D tool is composed by three scripts, written in Python 2.7.11, that automate i) the 3D instantaneous velocity model building, ii) the velocity model optimization, iii) the time-depth conversion. They determine a 3D geological model that is consistent with the primary geological constraints (e.g. depth of the markers on wells). The proposed workflow and the Vel-IO 3D tool have been tested, during the EU funded Project GeoMol, by the construction of the 3D geological model of a flat region, 5700 km2 in area, located in the central part of the Po Plain. The final 3D model showed the efficiency of the workflow and Vel-IO 3D tool in the management of large amount of data both in time and depth domain. A 4 layer-cake velocity model has been applied to a several thousand (5000-13,000 m) thick succession, with 15 horizons from Triassic up to Pleistocene, complicated by a Mesozoic extensional tectonics and by buried thrusts related to Southern Alps and Northern Apennines.
Extra dimensions: 3d and time in pdf documentation
NASA Astrophysics Data System (ADS)
Graf, N. A.
2008-07-01
High energy physics is replete with multi-dimensional information which is often poorly represented by the two dimensions of presentation slides and print media. Past efforts to disseminate such information to a wider audience have failed for a number of reasons, including a lack of standards which are easy to implement and have broad support. Adobe's Portable Document Format (PDF) has in recent years become the de facto standard for secure, dependable electronic information exchange. It has done so by creating an open format, providing support for multiple platforms and being reliable and extensible. By providing support for the ECMA standard Universal 3D (U3D) file format in its free Adobe Reader software, Adobe has made it easy to distribute and interact with 3D content. By providing support for scripting and animation, temporal data can also be easily distributed to a wide audience. In this talk, we present examples of HEP applications which take advantage of this functionality. We demonstrate how 3D detector elements can be documented, using either CAD drawings or other sources such as GEANT visualizations as input. Using this technique, higher dimensional data, such as LEGO plots or time-dependent information can be included in PDF files. In principle, a complete event display, with full interactivity, can be incorporated into a PDF file. This would allow the end user not only to customize the view and representation of the data, but to access the underlying data itself.
Extra Dimensions: 3D and Time in PDF Documentation
Graf, Norman A.; /SLAC
2011-11-10
High energy physics is replete with multi-dimensional information which is often poorly represented by the two dimensions of presentation slides and print media. Past efforts to disseminate such information to a wider audience have failed for a number of reasons, including a lack of standards which are easy to implement and have broad support. Adobe's Portable Document Format (PDF) has in recent years become the de facto standard for secure, dependable electronic information exchange. It has done so by creating an open format, providing support for multiple platforms and being reliable and extensible. By providing support for the ECMA standard Universal 3D (U3D) file format in its free Adobe Reader software, Adobe has made it easy to distribute and interact with 3D content. By providing support for scripting and animation, temporal data can also be easily distributed to a wide audience. In this talk, we present examples of HEP applications which take advantage of this functionality. We demonstrate how 3D detector elements can be documented, using either CAD drawings or other sources such as GEANT visualizations as input. Using this technique, higher dimensional data, such as LEGO plots or time-dependent information can be included in PDF files. In principle, a complete event display, with full interactivity, can be incorporated into a PDF file. This would allow the end user not only to customize the view and representation of the data, but to access the underlying data itself.
NASA Astrophysics Data System (ADS)
Zhang, Xi; Liu, Yang; Cai, Xiaohui; Ren, Zhiming
2015-12-01
The reverse-time migration (RTM) crosscorrelation imaging condition requires that the forward-propagated source wavefield and the backward-propagated receiver wavefield must be obtained at the same time. The easiest way to get the source wavefield is to save the entire time history of the full wavefield into computer memory. However, this strategy requires huge amount of data storage. It is impossible for large-scale 3D RTM. To reduce the computer memory cost, the back-propagated source wavefield is reconstructed by using the stored boundary wavefield. Its computer memory is proportional to the saved boundary grid points. For high order of spatial finite-difference (FD) schemes, more boundary grid points are needed to be stored, which consumes a large amount of the computer memory required for RTM. To further reduce the computer memory cost, we adopt the hybrid absorbing boundary condition (ABC) combined with the arbitrarily wide-angle wave equations (AWWEs). In our method, three boundary grid points can obtain good absorption. The source wavefield can be accurately reconstructed by using these points and the mirror-image symmetry method. Numerical experiments demonstrate the correctness and effectiveness of the proposed method. We compared our method with the conventional hybrid ABC method based on the 15°one way wave equations (OWWEs). Comparisons show that our method with three boundary grid points can achieve the same absorption as the conventional method with ten boundary grid points. For twentieth order of accuracy in space, our method uses only about 30% of memory requirement and about 59% of computation time required by the conventional method.
NASA Astrophysics Data System (ADS)
Wang, Ying; Zhou, Hui; Yuan, Sanyi; Ye, Yameng
2017-01-01
The fourth order accuracy finite difference scheme is known advantageous in reducing memory and improving efficiency. Summation-by-parts finite difference operator is a natural way for wavefield simulation in complicated domains containing surface topography and irregular interfaces. The application of summation-by-parts method guarantees the stability of numerical approximation for heterogeneous media on curvilinear grids. This paper extends the second order summation-by-parts finite difference method to the fourth order case for the discretization of acoustic wave equation and perfect matched layer in boundary-conforming grids. In particular, the implementation of the fourth order method for wavefield simulation and reverse time migration in complicated domains can significantly improve the efficiency and decrease the storage. The elliptic method is applied for boundary-conforming grid generation in complicated domains. Under such grids, the two-dimensional acoustic wave equation in second order displacement formulation is compactly reformulated for forward modeling and reverse time migration, and the symmetric and compact form of perfectly matched layers expressed in a curvilinear coordinate system are applied to suppress artificial reflections. The discretizations of the acoustic wave equation and perfectly matched layer formula are fourth and second order accuracy in space and time respectively, where the spatial discretization satisfies the principle of summation-by-parts and is stable. Numerical experiments are presented to compare the accuracy of the second with fourth order summation-by-parts finite difference methods and to evaluate the efficiency of reverse time migration by using these two methods. As well, comparisons are performed between the fourth order accuracy summation-by-parts finite difference method and central finite difference method to illustrate the stability superiority of summation-by-parts operators.
3D time-domain airborne EM forward modeling with topography
NASA Astrophysics Data System (ADS)
Yin, Changchun; Qi, Yanfu; Liu, Yunhe; Cai, Jing
2016-11-01
The time-domain finite-difference method has been widely used in simulation of the electromagnetic field diffusion. However, this method is severely restricted by the mesh size and time step. To overcome the defect, we adopted edge finite-element method for unstructured grid with Backward Euler method to conduct 3D airborne electromagnetic forward modeling directly in time-domain. The tetrahedral meshes provide the flexibility required for representing the rugged topography and complex-shape anomalous bodies. We simulated the practical shape, size and attitude of transmitting source by directly setting the loop into the well-generated grids. The characteristic properties of vector basic functions guarantee automatic satisfaction of divergence-free property of electric fields. The Galerkin's method is used to discretize the governing equations and a direct solver is adopted to solve the large sparse linear system. We adopted an algorithm with constant step in each time segment to speed up the forward modeling. Further we introduced the local mesh strategy to reduce the calculations, in which an optimized grid is designed for each sounding station. We check the accuracy of our 3D modeling results against the solution for a homogenous half-space and those for a buried vertical plate model using integral equation. The numerical experiments for a hill, a valley or undulating topography model with buried anomalous bodies were further studied that show that the topography has a serious effect on airborne EM data.
NASA Astrophysics Data System (ADS)
Zhou, Dong
2005-11-01
Modeling and simulation play increasingly more important roles in the development and commercialization of optical devices and integrated circuits. The current trend in photonic technologies is to push the level of integration and to utilize materials and structures of increasing complexity. On the other hand, the superb characteristics of free-space and fiber-optics continue to hold strong position to serve a wide range of applications. All these constitute significant challenges for the computer-aided modeling, simulation, and design of such optical devices and systems. The research work in this thesis deals with investigation and development of advanced finite-difference time-domain (FDTD) methods with focus on emerging optical devices and integrated circuits with complex material and/or structural properties. On the material aspects, we consider in a systematic fashion the dispersive and anisotropic characteristics of different materials (i.e., insulators, semiconductors, and conductors) in a broad wavelength range. The Lorentz model is examined and adapted as a general model for treating the material dispersion in the context of FDTD solutions. A dispersive FDTD method based on the multi-term Lorentz dispersive model is developed and employed for the modeling and design of the optical devices. In the FDTD scheme, the perfectly matched layer (PML) boundary condition is extended to the dispersive medium with arbitrary high order Lorentz terms. Finally, a parameter extraction scheme that links the Lorentz model to the experimental results is established. Further, the dispersive FDTD method is then applied to modeling and simulation of magneto-optical (MO) disk system, in combination of the vector diffraction theory. While the former is used for analysis of the interaction of the focused optical field interacting with the conducting materials on the surface of disk, the latter is to simulate the beam propagation from the objective lens to the disk surface. The
Real-time hardware for a new 3D display
NASA Astrophysics Data System (ADS)
Kaufmann, B.; Akil, M.
2006-02-01
We describe in this article a new multi-view auto-stereoscopic display system with a real time architecture to generate images of n different points of view of a 3D scene. This architecture generates all the different points of view with only one generation process, the different pictures are not generated independently but all at the same time. The architecture generates a frame buffer that contains all the voxels with their three dimensions and regenerates the different pictures on demand from this frame buffer. The need of memory is decreased because there is no redundant information in the buffer.
NASA Astrophysics Data System (ADS)
Komatitsch, Dimitri; Michéa, David; Erlebacher, Gordon; Göddeke, Dominik
2010-05-01
We first accelerate a three-dimensional finite-difference in the time domain (FDTD) wave propagation code by a factor of about 50 using Graphics Processing Unit (GPU) computing on a cheap NVIDIA graphics card with the CUDA programming language. We implement the code in CUDA in the case of the fully heterogeneous elastic wave equation. We also implement Convolution Perfectly Matched Layers (CPMLs) on the graphics card to efficiently absorb outgoing waves on the fictitious edges of the grid. We show that the code that runs on the graphics card gives the expected results by comparing our results to those obtained by running the same simulation on a classical processor core. The methodology that we present can be used for Maxwell's equations as well because their form is similar to that of the seismic wave equation written in velocity vector and stress tensor. We then implement a high-order finite-element (spectral-element) application, which performs the numerical simulation of seismic wave propagation resulting for instance from earthquakes at the scale of a continent or from active seismic acquisition experiments in the oil industry, on a cluster of NVIDIA Tesla graphics cards using the CUDA programming language and non blocking message passing based on MPI. We compare it to the implementation in C language and MPI on a classical cluster of CPU nodes. We use mesh coloring to efficiently handle summation operations over degrees of freedom on an unstructured mesh, and we exchange information between nodes using non blocking MPI messages. Using non-blocking communications allows us to overlap the communications across the network and the data transfer between the GPU card and the CPU node on which it is installed with calculations on that GPU card. We perform a number of numerical tests to validate the single-precision CUDA and MPI implementation and assess its accuracy. We then analyze performance measurements and in average we obtain a speedup of 20x to 25x.
NASA Astrophysics Data System (ADS)
de Larquier, S.; Pasko, V. P.; Stenbaek-Nielsen, H. C.; Wilson, C. R.; Olson, J. V.
2009-12-01
Atmospheric infrasonic waves are acoustic waves with frequencies ranging from 0.02 to 10 Hz, slightly higher than the acoustic cut-off frequency (approximately 0.032 Hz), but lower than the audible frequencies (typically 20 Hz-15 kHz) [e.g., Blanc, Ann. Geophys., 3, 673, 1985]. A number of natural events have been identified as generating atmospheric infrasound, such as volcanoes, tornadoes, avalanches, earthquakes [e.g., Bedard and Georges, Physics Today, S3, 32, 2000], ocean surfaces [e.g., Gossard and Hooke, Waves in the Atmosphere, Elsevier, 1975, Ch. 9], lightning [e.g., Assink et al., GRL, 35, L15802, 2008; Pasko, JGR, 114, D08205, 2009], or transient luminous events in the middle atmosphere termed sprites [e.g., Farges, Lightning: Principles, Instruments and Applications, H.D. Betz et al. (eds), Springer, 2009, Ch. 18]. The importance of infrasound studies has been emphasized in the past ten years from the Comprehensive Nuclear-Test-Ban Treaty verification perspective [e.g., Le Pichon et al., JGR, 114, D08112, 2009]. A proper understanding of infrasound propagation in the atmosphere is required for identification and classification of different infrasonic waves and their sources [Drob et al., JGR, 108, D21, 4680, 2003]. The goal of the present work is to provide a quantitative interpretation and explanation of infrasonic signatures from pulsating auroras reported recently by Wilson et al. [GRL, 32, L14810, 2005]. The infrasound signals observed with an infrasonic array at Fairbanks, Alaska had a mean amplitude of 0.05 Pa, a delay of about 5 minutes from the pulsating aurora, and an almost normal incidence on the ground plane [Wilson et al., 2005]. We employ a finite-difference time-domain (FDTD) model of infrasound propagation in a realistic atmosphere. We use the absorption model of infrasound introduced by Sutherland and Bass [J. Acoust. Soc. Am., 115, 1012, 2004]. Classical absorption mechanisms as well as molecular relaxation mechanisms are taken into
High Time Resolution Photon Counting 3D Imaging Sensors
NASA Astrophysics Data System (ADS)
Siegmund, O.; Ertley, C.; Vallerga, J.
2016-09-01
Novel sealed tube microchannel plate (MCP) detectors using next generation cross strip (XS) anode readouts and high performance electronics have been developed to provide photon counting imaging sensors for Astronomy and high time resolution 3D remote sensing. 18 mm aperture sealed tubes with MCPs and high efficiency Super-GenII or GaAs photocathodes have been implemented to access the visible/NIR regimes for ground based research, astronomical and space sensing applications. The cross strip anode readouts in combination with PXS-II high speed event processing electronics can process high single photon counting event rates at >5 MHz ( 80 ns dead-time per event), and time stamp events to better than 25 ps. Furthermore, we are developing a high speed ASIC version of the electronics for low power/low mass spaceflight applications. For a GaAs tube the peak quantum efficiency has degraded from 30% (at 560 - 850 nm) to 25% over 4 years, but for Super-GenII tubes the peak quantum efficiency of 17% (peak at 550 nm) has remained unchanged for over 7 years. The Super-GenII tubes have a uniform spatial resolution of <30 μm FWHM ( 1 x106 gain) and single event timing resolution of 100 ps (FWHM). The relatively low MCP gain photon counting operation also permits longer overall sensor lifetimes and high local counting rates. Using the high timing resolution, we have demonstrated 3D object imaging with laser pulse (630 nm 45 ps jitter Pilas laser) reflections in single photon counting mode with spatial and depth sensitivity of the order of a few millimeters. A 50 mm Planacon sealed tube was also constructed, using atomic layer deposited microchannel plates which potentially offer better overall sealed tube lifetime, quantum efficiency and gain stability. This tube achieves standard bialkali quantum efficiency levels, is stable, and has been coupled to the PXS-II electronics and used to detect and image fast laser pulse signals.
Greene, Jethro H; Taflove, Allen
2003-10-01
We report the initial three-dimensional finite-difference time-domain modeling of a vertically coupled photonic racetrack. The modeling reveals details of the full suite of space-time behavior of electromagnetic-wave phenomena involved in guiding, coupling, multimoding, dispersion, and radiation. This behavior is not easily obtainable by analytical or full-vector frequency-domain methods, measurements of terminal properties, or near-field scanning optical microscopy.
NASA Astrophysics Data System (ADS)
Panayappan, Kadappan
With the advent of sub-micron technologies and increasing awareness of Electromagnetic Interference and Compatibility (EMI/EMC) issues, designers are often interested in full- wave solutions of complete systems, taking to account a variety of environments in which the system operates. However, attempts to do this substantially increase the complexities involved in computing full-wave solutions, especially when the problems involve multi- scale geometries with very fine features. For such problems, even the well-established numerical methods, such as the time domain technique FDTD and the frequency domain methods FEM and MoM, are often challenged to the limits of their capabilities. In an attempt to address such challenges, three novel techniques have been introduced in this work, namely Dipole Moment (DM) Approach, Recursive Update in Frequency Domain (RUFD) and New Finite Difference Time Domain ( vFDTD). Furthermore, the efficacy of the above techniques has been illustrated, via several examples, and the results obtained by proposed techniques have been compared with other existing numerical methods for the purpose of validation. The DM method is a new physics-based approach for formulating MoM problems, which is based on the use of dipole moments (DMs), as opposed to the conventional Green's functions. The absence of the Green's functions, as well as those of the vector and scalar potentials, helps to eliminate two of the key sources of difficulties in the conventional MoM formulation, namely the singularity and low-frequency problems. Specifically, we show that there are no singularities that we need to be concerned with in the DM formulation; hence, this obviates the need for special techniques for integrating these singularities. Yet another salutary feature of the DM approach is its ability to handle thin and lossy structures, or whether they are metallic, dielectric-type, or even combinations thereof. We have found that the DM formulation can handle these
Real time 3D scanner: investigations and results
NASA Astrophysics Data System (ADS)
Nouri, Taoufik; Pflug, Leopold
1993-12-01
This article presents a concept of reconstruction of 3-D objects using non-invasive and touch loss techniques. The principle of this method is to display parallel interference optical fringes on an object and then to record the object under two angles of view. According to an appropriated treatment one reconstructs the 3-D object even when the object has no symmetrical plan. The 3-D surface data is available immediately in digital form for computer- visualization and for analysis software tools. The optical set-up for recording the 3-D object, the 3-D data extraction and treatment, as well as the reconstruction of the 3-D object are reported and commented on. This application is dedicated for reconstructive/cosmetic surgery, CAD, animation and research purposes.
NASA Astrophysics Data System (ADS)
Dou, Hu; Ma, Hongmei; Sun, Yu-Bao
2016-09-01
The finite-difference time-domain method is used to simulate the optical characteristics of an in-plane switching blue phase liquid crystal display. Compared with the matrix optic methods and the refractive method, the finite-difference time-domain method, which is used to directly solve Maxwell’s equations, can consider the lateral variation of the refractive index and obtain an accurate convergence effect. The simulation results show that e-rays and o-rays bend in different directions when the in-plane switching blue phase liquid crystal display is driven by the operating voltage. The finite-difference time-domain method should be used when the distribution of the liquid crystal in the liquid crystal display has a large lateral change. Project supported by the National Natural Science Foundation of China (Grant Nos. 11304074, 61475042, and 11274088), the Natural Science Foundation of Hebei Province, China (Grant Nos. A2015202320 and GCC2014048), and the Key Subject Construction Project of Hebei Province University, China.
Improved time-space method for 3-D heat transfer problems including global warming
Saitoh, T.S.; Wakashima, Shinichiro
1999-07-01
In this paper, the Time-Space Method (TSM) which has been proposed for solving general heat transfer and fluid flow problems was improved in order to cover global and urban warming. The TSM is effective in almost all-transient heat transfer and fluid flow problems, and has been already applied to the 2-D melting problems (or moving boundary problems). The computer running time will be reduced to only 1/100th--1/1000th of the existing schemes for 2-D and 3-D problems. However, in order to apply to much larger-scale problems, for example, global warming, urban warming and general ocean circulation, the SOR method (or other iterative methods) in four dimensions is somewhat tedious and provokingly slow. Motivated by the above situation, the authors improved the speed of iteration of the previous TSM by introducing the following ideas: (1) Timewise chopping: Time domain is chopped into small peaches to save memory requirement; (2) Adaptive iteration: Converged region is eliminated for further iteration; (3) Internal selective iteration: Equation with slow iteration speed in iterative procedure is selectively iterated to accelerate entire convergence; and (4) False transient integration: False transient term is added to the Poisson-type equation and the relevant solution is regarded as a parabolic equation. By adopting the above improvements, the higher-order finite different schemes and the hybrid mesh, the computer running time for the TSM is reduced to some 1/4600th of the conventional explicit method for a typical 3-D natural convection problem in a closed cavity. The proposed TSM will be more efficacious for large-scale environmental problems, such as global warming, urban warming and general ocean circulation, in which a tremendous computing time would be required.
Computational time analysis of the numerical solution of 3D electrostatic Poisson's equation
NASA Astrophysics Data System (ADS)
Kamboh, Shakeel Ahmed; Labadin, Jane; Rigit, Andrew Ragai Henri; Ling, Tech Chaw; Amur, Khuda Bux; Chaudhary, Muhammad Tayyab
2015-05-01
3D Poisson's equation is solved numerically to simulate the electric potential in a prototype design of electrohydrodynamic (EHD) ion-drag micropump. Finite difference method (FDM) is employed to discretize the governing equation. The system of linear equations resulting from FDM is solved iteratively by using the sequential Jacobi (SJ) and sequential Gauss-Seidel (SGS) methods, simulation results are also compared to examine the difference between the results. The main objective was to analyze the computational time required by both the methods with respect to different grid sizes and parallelize the Jacobi method to reduce the computational time. In common, the SGS method is faster than the SJ method but the data parallelism of Jacobi method may produce good speedup over SGS method. In this study, the feasibility of using parallel Jacobi (PJ) method is attempted in relation to SGS method. MATLAB Parallel/Distributed computing environment is used and a parallel code for SJ method is implemented. It was found that for small grid size the SGS method remains dominant over SJ method and PJ method while for large grid size both the sequential methods may take nearly too much processing time to converge. Yet, the PJ method reduces computational time to some extent for large grid sizes.
3D Vectorial Time Domain Computational Integrated Photonics
Kallman, J S; Bond, T C; Koning, J M; Stowell, M L
2007-02-16
The design of integrated photonic structures poses considerable challenges. 3D-Time-Domain design tools are fundamental in enabling technologies such as all-optical logic, photonic bandgap sensors, THz imaging, and fast radiation diagnostics. Such technologies are essential to LLNL and WFO sponsors for a broad range of applications: encryption for communications and surveillance sensors (NSA, NAI and IDIV/PAT); high density optical interconnects for high-performance computing (ASCI); high-bandwidth instrumentation for NIF diagnostics; micro-sensor development for weapon miniaturization within the Stockpile Stewardship and DNT programs; and applications within HSO for CBNP detection devices. While there exist a number of photonics simulation tools on the market, they primarily model devices of interest to the communications industry. We saw the need to extend our previous software to match the Laboratory's unique emerging needs. These include modeling novel material effects (such as those of radiation induced carrier concentrations on refractive index) and device configurations (RadTracker bulk optics with radiation induced details, Optical Logic edge emitting lasers with lateral optical inputs). In addition we foresaw significant advantages to expanding our own internal simulation codes: parallel supercomputing could be incorporated from the start, and the simulation source code would be accessible for modification and extension. This work addressed Engineering's Simulation Technology Focus Area, specifically photonics. Problems addressed from the Engineering roadmap of the time included modeling the Auston switch (an important THz source/receiver), modeling Vertical Cavity Surface Emitting Lasers (VCSELs, which had been envisioned as part of fast radiation sensors), and multi-scale modeling of optical systems (for a variety of applications). We proposed to develop novel techniques to numerically solve the 3D multi-scale propagation problem for both the microchip
Real-time 3D video conference on generic hardware
NASA Astrophysics Data System (ADS)
Desurmont, X.; Bruyelle, J. L.; Ruiz, D.; Meessen, J.; Macq, B.
2007-02-01
Nowadays, video-conference tends to be more and more advantageous because of the economical and ecological cost of transport. Several platforms exist. The goal of the TIFANIS immersive platform is to let users interact as if they were physically together. Unlike previous teleimmersion systems, TIFANIS uses generic hardware to achieve an economically realistic implementation. The basic functions of the system are to capture the scene, transmit it through digital networks to other partners, and then render it according to each partner's viewing characteristics. The image processing part should run in real-time. We propose to analyze the whole system. it can be split into different services like central processing unit (CPU), graphical rendering, direct memory access (DMA), and communications trough the network. Most of the processing is done by CPU resource. It is composed of the 3D reconstruction and the detection and tracking of faces from the video stream. However, the processing needs to be parallelized in several threads that have as little dependencies as possible. In this paper, we present these issues, and the way we deal with them.
Extra dimensions: 3D and time in PDF documentation
NASA Astrophysics Data System (ADS)
Graf, N. A.
2011-01-01
Experimental science is replete with multi-dimensional information which is often poorly represented by the two dimensions of presentation slides and print media. Past efforts to disseminate such information to a wider audience have failed for a number of reasons, including a lack of standards which are easy to implement and have broad support. Adobe's Portable Document Format (PDF) has in recent years become the de facto standard for secure, dependable electronic information exchange. It has done so by creating an open format, providing support for multiple platforms and being reliable and extensible. By providing support for the ECMA standard Universal 3D (U3D) file format in its free Adobe Reader software, Adobe has made it easy to distribute and interact with 3D content. By providing support for scripting and animation, temporal data can also be easily distributed to a wide, non-technical audience. We discuss how the field of radiation imaging could benefit from incorporating full 3D information about not only the detectors, but also the results of the experimental analyses, in its electronic publications. In this article, we present examples drawn from high-energy physics, mathematics and molecular biology which take advantage of this functionality. We demonstrate how 3D detector elements can be documented, using either CAD drawings or other sources such as GEANT visualizations as input.
Extra Dimensions: 3D and Time in PDF Documentation
Graf, N.A.; /SLAC
2012-04-11
Experimental science is replete with multi-dimensional information which is often poorly represented by the two dimensions of presentation slides and print media. Past efforts to disseminate such information to a wider audience have failed for a number of reasons, including a lack of standards which are easy to implement and have broad support. Adobe's Portable Document Format (PDF) has in recent years become the de facto standard for secure, dependable electronic information exchange. It has done so by creating an open format, providing support for multiple platforms and being reliable and extensible. By providing support for the ECMA standard Universal 3D (U3D) file format in its free Adobe Reader software, Adobe has made it easy to distribute and interact with 3D content. By providing support for scripting and animation, temporal data can also be easily distributed to a wide, non-technical audience. We discuss how the field of radiation imaging could benefit from incorporating full 3D information about not only the detectors, but also the results of the experimental analyses, in its electronic publications. In this article, we present examples drawn from high-energy physics, mathematics and molecular biology which take advantage of this functionality. We demonstrate how 3D detector elements can be documented, using either CAD drawings or other sources such as GEANT visualizations as input.
NASA Astrophysics Data System (ADS)
Bogatyrev, I. B.; Grojo, D.; Delaporte, P.; Leyder, S.; Sentis, M.; Marine, W.; Itina, T. E.
2011-11-01
We present a theoretical model, which describes local energy deposition inside IR-transparent silicon and gallium arsenide with focused 1.3-μm wavelength femtosecond laser pulses. Our work relies on the ionization rate equation and two temperature model (TTM), as we simulate the non-linear propagation of focused femtosecond light pulses by using a 3D finite difference time domain method. We find a strong absorption dependence on the initial free electron density (doping concentration) that evidences the role of avalanche ionization. Despite an influence of Kerr-type self-focusing at intensity required for non-linear absorption, we show the laser energy deposition remains confined when the focus position is moved down to 1-mm below the surface. Our simulation results are in agreement with the degree of control observed in a simple model experiment.
NASA Technical Reports Server (NTRS)
Carpenter, Mark H.; Gottlieb, David; Abarbanel, Saul
1994-01-01
We present a systematic method for constructing boundary conditions (numerical and physical) of the required accuracy, for compact (Pade-like) high-order finite-difference schemes for hyperbolic systems. First a proper summation-by-parts formula is found for the approximate derivative. A 'simultaneous approximation term' is then introduced to treat the boundary conditions. This procedure leads to time-stable schemes even in the system case. An explicit construction of the fourth-order compact case is given. Numerical studies are presented to verify the efficacy of the approach.
NASA Technical Reports Server (NTRS)
Carpenter, Mark H.; Gottlieb, David; Abarbanel, Saul
1993-01-01
We present a systematic method for constructing boundary conditions (numerical and physical) of the required accuracy, for compact (Pade-like) high-order finite-difference schemes for hyperbolic systems. First, a roper summation-by-parts formula is found for the approximate derivative. A 'simultaneous approximation term' (SAT) is then introduced to treat the boundary conditions. This procedure leads to time-stable schemes even in the system case. An explicit construction of the fourth-order compact case is given. Numerical studies are presented to verify the efficacy of the approach.
Saarelma, Jukka; Savioja, Lauri
2016-12-01
The finite-difference time-domain method has gained increasing interest for room acoustic prediction use. A well-known limitation of the method is a frequency and direction dependent dispersion error. In this study, the audibility of dispersion error in the presence of air absorption is measured. The results indicate that the dispersion error in the worst-case direction of the studied scheme gets masked by the air absorption at a phase velocity error percentage of 0.28% at the frequency of 20 kHz.
NASA Astrophysics Data System (ADS)
Li, Xueyang; Xiao, Aiguo
2014-06-01
The Gross-Pitaevskii equation is the model equation of the single-particle wave function in a Bose-Einstein condensation. A computation difficulty of the Gross-Pitaevskii equation comes from the semiclassical problem in supercritical case. In this paper, we apply a diffeomorphism to transform the original one-dimensional Gross-Pitaevskii equation into a modified equation. The adaptive grids are constructed through the interpolating wavelet method. Then, we use the time-splitting finite difference method with the wavelet-adaptive grids to solve the modified Gross-Pitaevskii equation, where the approximation to the second-order derivative is given by the Lagrange interpolation method. At last, the numerical results are given. It is shown that the obtained time-splitting finite difference method with the wavelet-adaptive grids is very efficient for solving the one-dimensional semiclassical Gross-Pitaevskii equation in supercritical case and it is suitable to deal with the local high oscillation of the solution.
Real-Time Camera Guidance for 3d Scene Reconstruction
NASA Astrophysics Data System (ADS)
Schindler, F.; Förstner, W.
2012-07-01
We propose a framework for operator guidance during the image acquisition process for reliable multi-view stereo reconstruction. Goal is to achieve full coverage of the object and sufficient overlap. Multi-view stereo is a commonly used method to reconstruct both camera trajectory and 3D object shape. After determining an initial solution, a globally optimal reconstruction is usually obtained by executing a bundle adjustment involving all images. Acquiring suitable images, however, still requires an experienced operator to ensure accuracy and completeness of the final solution. We propose an interactive framework for guiding unexperienced users or possibly an autonomous robot. Using approximate camera orientations and object points we estimate point uncertainties within a sliding bundle adjustment and suggest appropriate camera movements. A visual feedback system communicates the decisions to the user in an intuitive way. We demonstrate the suitability of our system with a virtual image acquisition simulation as well as in real-world scenarios. We show that when following the camera movements suggested by our system, the proposed framework is able to generate good approximate values for the bundle adjustment, leading to accurate results compared to ground truth after few iterations. Possible applications are non-professional 3D acquisition systems on low-cost platforms like mobile phones, autonomously navigating robots as well as online flight planning of unmanned aerial vehicles.
Future enhancements to 3D printing and real time production
NASA Astrophysics Data System (ADS)
Landa, Joseph; Jenkins, Jeffery; Wu, Jerry; Szu, Harold
2014-05-01
The cost and scope of additive printing machines range from several hundred to hundreds of thousands of dollars. For the extra money, one can get improvements in build size, selection of material properties, resolution, and consistency. However, temperature control during build and fusing predicts outcome and protects the IP by large high cost machines. Support material options determine geometries that can be accomplished which drives cost and complexity of printing heads. Historically, 3D printers have been used for design and prototyping efforts. Recent advances and cost reduction sparked new interest in developing printed products and consumables such as NASA who is printing food, printing consumer parts (e.g. cell phone cases, novelty toys), making tools and fixtures in manufacturing, and recursively print a self-similar printer (c.f. makerbot). There is a near term promise of the capability to print on demand products at the home or office... directly from the printer to use.
Asakura, T; Ishizuka, T; Miyajima, T; Toyoda, M; Sakamoto, S
2014-09-01
Due to limitations of computers, prediction of structure-borne sound remains difficult for large-scale problems. Herein a prediction method for low-frequency structure-borne sound transmissions on concrete structures using the finite-difference time-domain scheme is proposed. The target structure is modeled as a composition of multiple plate elements to reduce the dimensions of the simulated vibration field from three-dimensional discretization by solid elements to two-dimensional discretization. This scheme reduces both the calculation time and the amount of required memory. To validate the proposed method, the vibration characteristics using the numerical results of the proposed scheme are compared to those measured for a two-level concrete structure. Comparison of the measured and simulated results suggests that the proposed method can be used to simulate real-scale structures.
Integration of real-time 3D capture, reconstruction, and light-field display
NASA Astrophysics Data System (ADS)
Zhang, Zhaoxing; Geng, Zheng; Li, Tuotuo; Pei, Renjing; Liu, Yongchun; Zhang, Xiao
2015-03-01
Effective integration of 3D acquisition, reconstruction (modeling) and display technologies into a seamless systems provides augmented experience of visualizing and analyzing real objects and scenes with realistic 3D sensation. Applications can be found in medical imaging, gaming, virtual or augmented reality and hybrid simulations. Although 3D acquisition, reconstruction, and display technologies have gained significant momentum in recent years, there seems a lack of attention on synergistically combining these components into a "end-to-end" 3D visualization system. We designed, built and tested an integrated 3D visualization system that is able to capture in real-time 3D light-field images, perform 3D reconstruction to build 3D model of the objects, and display the 3D model on a large autostereoscopic screen. In this article, we will present our system architecture and component designs, hardware/software implementations, and experimental results. We will elaborate on our recent progress on sparse camera array light-field 3D acquisition, real-time dense 3D reconstruction, and autostereoscopic multi-view 3D display. A prototype is finally presented with test results to illustrate the effectiveness of our proposed integrated 3D visualization system.
Kitamura, Kyoko; Sakai, Kyosuke; Noda, Susumu
2011-07-18
Radially polarized focused beams have attracted a great deal of attention because of their unique properties characterized by the longitudinal field. Although this longitudinal field is strongly confined to the beam axis, the energy flow, i.e., the Poynting vector, has null intensity on the axis. Hence, the interaction of the focused beam and matter has thus far been unclear. We analyzed the interactions between the focused beam and a subwavelength metal block placed at the center of the focus using three-dimensional finite-difference time-domain (FDTD) calculation. We found that most of the Poynting energy propagates through to the far-field, and that a strong enhancement of the electric field appeared on the metal surface. This enhancement is attributed to the constructive interference of the symmetric electric field and the coupling to the surface plasmon mode.
Potravkin, N N; Perezhogin, I A; Makarov, V A
2012-11-01
We propose an alternative method of integration of Maxwell equations. This method is the generalization of a finite-difference time-domain method with an auxiliary differential equation for the case of a linear optical medium with a frequency dispersion and an arbitrary source of spatial dispersion. We apply this method to the problem of the propagation of short plane-wave linearly polarized light pulses in such a medium. It is shown that some features of their propagation are completely different from those that are generally recognized for the linear optical activity phenomenon. For example, in some cases an initially linearly polarized light pulse becomes elliptically polarized during the propagation. This effect is more prominent in the front part of the pulse.
NASA Technical Reports Server (NTRS)
Mickens, Ronald E.
1996-01-01
A large class of physical phenomena can be modeled by evolution and wave type Partial Differential Equations (PDE). Few of these equations have known explicit exact solutions. Finite-difference techniques are a popular method for constructing discrete representations of these equations for the purpose of numerical integration. However, the solutions to the difference equations often contain so called numerical instabilities; these are solutions to the difference equations that do not correspond to any solution of the PDE's. For explicit schemes, the elimination of this behavior requires functional relations to exist between the time and space steps-sizes. We show that such functional relations can be obtained for certain PDE's by use of a positivity condition. The PDE's studied are the Burgers, Fisher, and linearized Euler equations.
NASA Astrophysics Data System (ADS)
Jarem, John M.
1991-03-01
A multifilament method of moments (MOM) analysis and a finite-difference time-domain (FE-TD) analysis are used to numerically calculate the input impedance of a probe-sleeve fed rectangular waveguide which has been short-circuited on one side. The input impedance of the system is determined by using the above methods for several probe-sleeve configurations, and reasonable agreement between the two methods for the cases studied is found. An MOM Green's function formulation which is based on scattering superposition and which allows the input impedance of a probe-sleeve feed to be calculated when the waveguide is terminated in a given load is derived. The MOM results and FD-TD numerical results are compared for this loaded waveguide input impedance case, and reasonable agreement between the methods is found. A comparison of theory and experiment is given for when the waveguide is terminated in a ground plane aperture.
NASA Astrophysics Data System (ADS)
Lacombe, Jürgen; Sergeev, Oleg; Chakanga, Kambulakwao; von Maydell, Karsten; Agert, Carsten
2011-07-01
In this paper, modeling of light propagation in silicon thin film solar cells without using any fitting parameter is presented. The aim is to create a realistic view of the light trapping effects and of the resulting optical generation rate in the absorbing semiconductor layers. The focus is on real three dimensional systems. Our software Sentaurus tcad, developed by Synopsys, has the ability to import real topography measurements and to model the light propagation using the finite-difference time-domain method. To verify the simulation, we compared the measured and simulated angular distribution functions of a glass/SnO2:F transparent conducting oxide system for different wavelengths. The optical generation rate of charge carriers in amorphous silicon thin film solar cells including rough interfaces is calculated. The distribution of the optical generation rate is correlated with the shape of the interface, and the external quantum efficiencies are calculated and compared to experimental data.
Real-time 3-D ultrasound scan conversion using a multicore processor.
Zhuang, Bo; Shamdasani, Vijay; Sikdar, Siddhartha; Managuli, Ravi; Kim, Yongmin
2009-07-01
Real-time 3-D ultrasound scan conversion (SC) in software has not been practical due to its high computation and I/O data handling requirements. In this paper, we describe software-based 3-D SC with high volume rates using a multicore processor, Cell. We have implemented both 3-D SC approaches: 1) the separable 3-D SC where two 2-D coordinate transformations in orthogonal planes are performed in sequence and 2) the direct 3-D SC where the coordinate transformation is directly handled in 3-D. One Cell processor can scan-convert a 192 x 192 x 192 16-bit volume at 87.8 volumes/s with the separable 3-D SC algorithm and 28 volumes/s with the direct 3-D SC algorithm.
NASA Astrophysics Data System (ADS)
Pallozzi Lavorante, Luca; Dirk Ebert, Hans
2008-07-01
Tensor3D is a geometric modeling program with the capacity to simulate and visualize in real-time the deformation, specified through a tensor matrix and applied to triangulated models representing geological bodies. 3D visualization allows the study of deformational processes that are traditionally conducted in 2D, such as simple and pure shears. Besides geometric objects that are immediately available in the program window, the program can read other models from disk, thus being able to import objects created with different open-source or proprietary programs. A strain ellipsoid and a bounding box are simultaneously shown and instantly deformed with the main object. The principal axes of strain are visualized as well to provide graphical information about the orientation of the tensor's normal components. The deformed models can also be saved, retrieved later and deformed again, in order to study different steps of progressive strain, or to make this data available to other programs. The shape of stress ellipsoids and the corresponding Mohr circles defined by any stress tensor can also be represented. The application was written using the Visualization ToolKit, a powerful scientific visualization library in the public domain. This development choice, allied to the use of the Tcl/Tk programming language, which is independent on the host computational platform, makes the program a useful tool for the study of geometric deformations directly in three dimensions in teaching as well as research activities.
A graph theoretic approach for computing 3D+time biventricular cardiac strain from tagged MRI data.
Li, Ming; Gupta, Himanshu; Lloyd, Steven G; Dell'Italia, Louis J; Denney, Thomas S
2017-01-01
Tagged magnetic resonance imaging (tMRI) is a well-established method for evaluating regional mechanical function of the heart. Many techniques have been developed to compute 2D or 3D cardiac deformation and strain from tMRI images. In this paper, we present a new method for measuring 3D plus time biventricular myocardial strain from tMRI data. The method is composed of two parts. First, we use a Gabor filter bank to extract tag points along tag lines. Second, each tag point is classified to one of a set of indexed reference tag lines using a point classification with graph cuts (PCGC) algorithm and a motion compensation technique. 3D biventricular deformation and strain is computed at each image time frame from the classified tag points using a previously published finite difference method. The strain computation is fully automatic after myocardial contours are defined near end-diastole and end-systole. An in-vivo dataset composed of 30 human imaging studies with a range of pathologies was used for validation. Strains computed with the PCGC method with no manual corrections were compared to strains computed from both manually placed tag points and a manually-corrected unwrapped phase method. A typical cardiac imaging study with 10 short-axis slices and 6 long-axis slices required 30 min for contouring followed by 44 min of automated processing. The results demonstrate that the proposed method can reconstruct accurate 3D plus time cardiac strain maps with minimal user intervention.
NASA Astrophysics Data System (ADS)
Valerio, A.; Rajaram, H.; Zagona, E.
2007-12-01
Accurate representation of groundwater-surface water interactions is critical to modeling low river flow periods in riparian environments in the semi-arid southwestern United States. As an example, over-appropriation of human water use in the Middle Rio Grande region adversely impacts the habitat of the endangered Rio Grande silvery minnow. Improved management practices during low flow conditions could prevent channel desiccation and habitat destruction. We present a modeling tool with significant potential for improved decision-making in stream reaches influenced by significant surface-groundwater interactions. While river basin management models typically represent operational complexities such as human elements of water demand and consumption with a high degree of sophistication, they often represent groundwater-surface water interactions semi-empirically or at coarse resolution. In contrast, distributed groundwater models, with an adequately fine grid represent groundwater-surface water interactions accurately, but seldom incorporate complex details of water rights and user demands. To best exploit the strengths of both classes of models, we have developed a link between the object-oriented river management software package RiverWare and the USGS groundwater modeling program MODFLOW. An interactive time stepping approach is used in the linked model. RiverWare and MODFLOW run in parallel exchanging data after each time-step. This linked framework incorporates several features critical to modeling groundwater-surface interactions in riparian zones, including riparian ET, localized variations in seepage rates and rule-based water allocations to users and/or environmental flows, and is expected to be an improved tool for modeling groundwater-surface water interaction in regions where groundwater storage repose to changing river conditions is rapid. The performance of the linked model is illustrated through applications on the Rio Grande in the vicinity of
Multiple-Relaxation-Time Lattice Boltzmann Models in 3D
NASA Technical Reports Server (NTRS)
dHumieres, Dominique; Ginzburg, Irina; Krafczyk, Manfred; Lallemand, Pierre; Luo, Li-Shi; Bushnell, Dennis M. (Technical Monitor)
2002-01-01
This article provides a concise exposition of the multiple-relaxation-time lattice Boltzmann equation, with examples of fifteen-velocity and nineteen-velocity models in three dimensions. Simulation of a diagonally lid-driven cavity flow in three dimensions at Re=500 and 2000 is performed. The results clearly demonstrate the superior numerical stability of the multiple-relaxation-time lattice Boltzmann equation over the popular lattice Bhatnagar-Gross-Krook equation.
Ebstein's anomaly assessed by real-time 3-D echocardiography.
Acar, Philippe; Abadir, Sylvia; Roux, Daniel; Taktak, Assaad; Dulac, Yves; Glock, Yves; Fournial, Gerard
2006-08-01
The outcome of patients with Ebstein's malformation depends mainly on the severity of the tricuspid valve malformation. Accurate description of the tricuspid anatomy by two-dimensional echocardiography remains difficult. We applied real-time three-dimensional echocardiography to 3 patients with Ebstein's anomaly. Preoperative and postoperative descriptions of the tricuspid valve were obtained from views taken inside the right ventricle. Surface of the leaflets as well as the commissures were obtained by three-dimensional echocardiography. Real time three-dimensional echocardiography is a promising tool, providing new views that will help to evaluate the ability and efficiency of surgical valve repair in patient with Ebstein's malformation.
Sanford, R.F.
1982-01-01
Geological examples of binary diffusion are numerous. They are potential indicators of the duration and rates of geological processes. Analytical solutions to the diffusion equations generally do not allow for variable diffusion coefficients, changing boundary conditions, and impingement of diffusion fields. The three programs presented here are based on Crank-Nicholson finite-difference approximations, which can take into account these complicating factors. Program 1 describes the diffusion of a component into an initially homogeneous phase that has a constant surface composition. Specifically it is written for Fe-Mg exchange in olivine at oxygen fugacities appropriate for the lunar crust, but other components, phases, or fugacities may be substituted by changing the values of the diffusion coefficient. Program 2 simulates the growth of exsolution lamellae. Program 3 describes the growth of reaction rims. These two programs are written for pseudobinary Ca-(Mg, Fe) exchange in pyroxenes. In all three programs, the diffusion coefficients and boundary conditions can be varied systematically with time. To enable users to employ widely different numerical values for diffusion coefficients and diffusion distance, the grid spacing in the space dimension and the increment by which the grid spacing in the time dimension is increased at each time step are input constants that can be varied each time the programs are run to yield a solution of the desired accuracy. ?? 1982.
NASA Astrophysics Data System (ADS)
Peng, Hanchuan; Long, Fuhui
Everyone understands seeing more is knowing more. However, for large-scale 3D microscopic image analysis, it has not been an easy task to efficiently visualize, manipulate and understand high-dimensional data in 3D, 4D or 5D spaces. We developed a new 3D+ image visualization and analysis platform, V3D, to meet this need. The V3D system provides 3D visualization of gigabyte-sized microscopy image stacks in real time on current laptops and desktops. V3D streamlines the online analysis, measurement and proofreading of complicated image patterns by combining ergonomic functions for selecting a location in an image directly in 3D space and for displaying biological measurements, such as from fluorescent probes, using the overlaid surface objects. V3D runs on all major computer platforms and can be enhanced by software plug-ins to address specific biological problems. To demonstrate this extensibility, we built a V3Dbased application, V3D-Neuron, to reconstruct complex 3D neuronal structures from high-resolution brain images. V3D-Neuron can precisely digitize the morphology of a single neuron in a fruitfly brain in minutes, with about a 17-fold improvement in reliability and tenfold savings in time compared with other neuron reconstruction tools. Using V3D-Neuron, we demonstrate the feasibility of building a high-resolution 3D digital atlas of neurite tracts in the fruitfly brain. V3D can be easily extended using a simple-to-use and comprehensive plugin interface.
Real-time 3D vibration measurements in microstructures
NASA Astrophysics Data System (ADS)
Kowarsch, Robert; Ochs, Wanja; Giesen, Moritz; Dräbenstedt, Alexander; Winter, Marcus; Rembe, Christian
2012-04-01
The real-time measurement of three-dimensional vibrations is currently a major interest of academic research and industrial device characterization. The most common and practical solution used so far consists of three single-point laser-Doppler vibrometers which measure vibrations of a scattering surface from three directions. The resulting three velocity vectors are transformed into a Cartesian coordinate system. This technique does also work for microstructures but has some drawbacks: (1) The surface needs to scatter light, (2) the three laser beams can generate optical crosstalk if at least two laser frequencies match within the demodulation bandwidth, and (3) the laser beams have to be separated on the surface under test to minimize optical crosstalk such that reliable measurements are possible. We present a novel optical approach, based on the direction-dependent Doppler effect, which overcomes all the drawbacks of the current technology. We have realized a demonstrator with a measurement spot of < 3.5 μm diameter that does not suffer from optical crosstalk because only one laser beam impinges the specimen surface while the light is collected from three different directions.
3D real time methodology monitoring cement failures in THA.
Qi, Gang; Li, Jihui; Mann, Kenneth A; Mouchon, W Paul; Hamstad, Marvin A; Salehi, Abraham; Whitten, Stephen A
2004-12-01
The present work proposed a methodology to monitor cement microcrack formation in the cemented femoral stem construct using the acoustic emission technique. This technique provides a unique means to automatically tally the number of microcracks, to visualize microcrack distribution, and to animate the progress of crack formation in a given time window of a fatigue test. In this work, the formulation of microcrack source location was derived and a computer program was developed specifically for the proposed application. The program was validated using computer simulation and standard pencil lead break tests. It was found that the mathematical errors complied with the acceptable minimal error. Based on the pencil lead break tests, the average technical error used to estimate the resolution of this technique was 4.7 mm at the present stage. The program was then used to monitor the fatigue damage in precoated cemented femoral hip constructs loaded for a total of more than five million cycles. Two types of microcrack activities were observed in the experiments: Type I and Type II microcracks. A Type I microcrack was a crack that was captured by four or more sensors, and therefore its location was defined uniquely by a set of coordinates. A Type II microcrack was a crack that was captured by three or less sensors, therefore it was unlocatable. Both counts of Type I and Type II microcrack were tallied with respect to the day of fatigue tests. Acoustic emission microcrack graphs were used to visualize the distribution of Type I microcracks in the construct. It was found that the Type I microcracks distributed mainly over the proximal third of the stem. The amount of microcrack events decreased significantly as the number of loading cycles increased.
Chaudhury, Bhaskar; Chaturvedi, Shashank
2006-12-15
Power-flow trajectories of electromagnetic waves through a spatially nonuniform plasma have been computed using direct solutions of Maxwell's equations using the three-dimensional finite-difference time-domain (FDTD) method. This method yields accurate information on refraction as well as absorption effects. The method can be used to compute power-flow trajectories for plasmas with arbitrarily varying density profiles, including effects due to arbitrarily shaped conducting or dielectric surfaces bounding the plasma. Furthermore, since FDTD is computationally expensive, especially for parametric studies, it is desirable to use ray tracing to estimate refraction effects. A quantitative comparison is performed between two different methods of obtaining exact and approximate solutions of Maxwell's equations in order to assess their relative utility in different situations. In the present work, we limit ourselves to a cold, collisional, unmagnetized plasma, where the response to electromagnetic waves is fully specified by a dispersion relation based on magnetoionic theory. It is shown that ray tracing in such plasmas yields accurate results only when two conditions are satisfied. Firstly, the density scale length should be long as compared to the free-space wavelength of the incident wave. Secondly, the conduction current should be small as compared to the displacement current in the medium. The second condition is one which has been identified for the first time.
Fitzgerald, Anthony J.; Pickwell-MacPherson, Emma; Wallace, Vincent P.
2014-01-01
The aim of this work was to evaluate the capabilities of Debye theory combined with Finite Difference Time Domain (FDTD) methods to simulate the terahertz (THz) response of breast tissues. Being able to accurately model breast tissues in the THz regime would facilitate the understanding of image contrast parameters used in THz imaging of breast cancer. As a test case, the model was first validated using liquid water and simulated reflection pulses were compared to experimental measured pulses with very good agreement (p = 1.00). The responses of normal and cancerous breast tissues were simulated with Debye properties and the correlation with measured data was still high for tumour (p = 0.98) and less so for normal breast (p = 0.82). Sections of the time domain pulses showed clear differences that were also evident in the comparison of pulse parameter values. These deviations may arise from the presence of adipose and other inhomogeneities in the breast tissue that are not accounted for when using the Debye model. In conclusion, the study demonstrates the power of the model for simulating THz reflection imaging; however, for biological tissues extra Debye terms or a more detailed theory may be required to link THz image contrast to physiological composition and structural changes of breast tissue associated with differences between normal and tumour tissues. PMID:25010734
An optical real-time 3D measurement for analysis of facial shape and movement
NASA Astrophysics Data System (ADS)
Zhang, Qican; Su, Xianyu; Chen, Wenjing; Cao, Yiping; Xiang, Liqun
2003-12-01
Optical non-contact 3-D shape measurement provides a novel and useful tool for analysis of facial shape and movement in presurgical and postsurgical regular check. In this article we present a system, which allows a precise 3-D visualization of the patient's facial before and after craniofacial surgery. We discussed, in this paper, the real time 3-D image capture, processing and the 3-D phase unwrapping method to recover complex shape deformation when the movement of the mouth. The result of real-time measurement for facial shape and movement will be helpful for the more ideal effect in plastic surgery.
Time within time: 3D printed sculptures within holographic art practice
NASA Astrophysics Data System (ADS)
Chang, Yin-Ren; Richardson, Martin
2015-03-01
Holography is a time-based medium, which uses its own aesthetics and techniques to interpret colour and light. This exclusive descriptive language does not simply represent a particular scenario in the moment of recording, but also documents the performance light during the shooting process. Nowadays 3D graphic software and Internet offer practitioners greater mobility in both the development and the delivery of their artwork. Furthermore, the diverse web-based social media presents unlimited and various spaces to facilitate artists in the exchange of creative knowledge, it enables them to collaborate on their projects with external connections - audience, specialists, etc. Within the analogue holography art practice, there is a primary lack of interface, or, in other words, it cannot utilise any digital creative tools. 3D printing makes it possible to bridge the gap between cyber space and the holographic world; even more so, as this emerging technique also becomes a platform, which can connect computational data and light information. The application of 3D printing in contemporary art will reshape the process of creation, as well as the form of visual narrative itself. New technologies continually and increasingly involve the projection of another artistic dimension, and the term "visual" embarks on challenging the generally accepted notion of understanding art and interacting with it. As new pathways of practice are established, it will take years to build a complete understanding of this medium in order to be able to take a full advantage of the benefits its use offers. This paper is aimed at looking for the potential new ways of artistic expression, deriving from the interrelation between analogue holography and 3D printing. It will also attempt an articulate assessment of 3D printing within the dynamic holographic aesthetics.
NASA Technical Reports Server (NTRS)
Sun, W.; Loeb, N. G.; Videen, G.; Fu, Q.
2004-01-01
Natural particles such as ice crystals in cirrus clouds generally are not pristine but have additional micro-roughness on their surfaces. A two-dimensional finite-difference time-domain (FDTD) program with a perfectly matched layer absorbing boundary condition is developed to calculate the effect of surface roughness on light scattering by long ice columns. When we use a spatial cell size of 1/120 incident wavelength for ice circular cylinders with size parameters of 6 and 24 at wavelengths of 0.55 and 10.8 mum, respectively, the errors in the FDTD results in the extinction, scattering, and absorption efficiencies are smaller than similar to 0.5%. The errors in the FDTD results in the asymmetry factor are smaller than similar to 0.05%. The errors in the FDTD results in the phase-matrix elements are smaller than similar to 5%. By adding a pseudorandom change as great as 10% of the radius of a cylinder, we calculate the scattering properties of randomly oriented rough-surfaced ice columns. We conclude that, although the effect of small surface roughness on light scattering is negligible, the scattering phase-matrix elements change significantly for particles with large surface roughness. The roughness on the particle surface can make the conventional phase function smooth. The most significant effect of the surface roughness is the decay of polarization of the scattered light.
Gao, YingJie; Yang, HongWei
2014-01-01
An explicit high-order, symplectic, finite-difference time-domain (SFDTD) scheme is applied to a bioelectromagnetic simulation using a simple model of a pregnant woman and her fetus. Compared to the traditional FDTD scheme, this scheme maintains the inherent nature of the Hamilton system and ensures energy conservation numerically and a high precision. The SFDTD scheme is used to predict the specific absorption rate (SAR) for a simple model of a pregnant female woman (month 9) using radio frequency (RF) fields from 1.5 T and 3 T MRI systems (operating at approximately 64 and 128 MHz, respectively). The results suggest that by using a plasma protective layer under the 1.5 T MRI system, the SAR values for the pregnant woman and her fetus are significantly reduced. Additionally, for a 90 degree plasma protective layer, the SAR values are approximately equal to the 120 degree layer and the 180 degree layer, and it is reduced relative to the 60 degree layer. This proves that using a 90 degree plasma protective layer is the most effective and economical angle to use. PMID:25493433
Liu, Gui-qiang; Hu, Ying; Liu, Zheng-qi; Chen, Yuan-hao; Cai, Zheng-jie; Zhang, Xiang-nan; Huang, Kuan
2014-03-07
We propose a robust multispectral transparent plasmonic structure and calculate its transparency response by using the three-dimensional finite-difference time-domain (FDTD) method. The proposed structure is composed of a continuous ultrathin metal film sandwiched by double two-dimensional (2D) hexagonal non-close-packed metal-dielectric multilayer core-shell nanoparticle arrays. The top and bottom plasmonic arrays in such a structure, respectively, act as the light input and output couplers to carry out the efficient trapping and release of light. Near-perfect multispectral optical transparency in the visible and near-infrared regions is achieved theoretically. The calculated electric field distribution patterns show that the near-perfect multispectral optical transparency mainly originates from the excitation and hybridization of shell and core plasmon modes, strong near-field coupling of dipole plasmon modes between adjacent nanoparticles as well as the excitation of surface plasmon waves of the metal film. The robust transparency bands can be efficiently tuned in a large range by varying the structural parameters and the surrounding dielectric environment. The proposed structure also shows additional merits such as a deep sub-wavelength size and fully retained electrical and mechanical properties of the natural metal. These features might provide promising applications in highly integrated optoelectronic devices including plasmonic filters, nanoscale multiplexers, and non-linear optics.
NASA Astrophysics Data System (ADS)
Francés, Jorge; Bleda, Sergio; Álvarez, Mariela Lázara; Martínez, Francisco Javier; Márquez, Andres; Neipp, Cristian; Beléndez, Augusto
2014-01-01
The implementation of split-field finite difference time domain (SF-FDTD) applied to light-wave propagation through periodic media with arbitrary anisotropy method in graphics processing units (GPUs) is described. The SF-FDTD technique and the periodic boundary condition allow the consideration of a single period of the structure reducing the simulation grid. Nevertheless, the analysis of the anisotropic media implies considering all the electromagnetic field components and the use of complex notation. These aspects reduce the computational efficiency of the numerical method compared with the isotropic and nonperiodic implementation. Specifically, the implementation of the SF-FDTD in the Kepler family of GPUs of NVIDIA is presented. An analysis of the performance of this implementation is done, and several applications have been considered in order to estimate the possibilities provided by both the formalism and the implementation into GPU: binary phase gratings and twisted-nematic liquid crystal cells. Regarding the analysis of binary phase gratings, the validity of the scalar diffraction theory is evaluated by the comparison of the diffraction efficiencies predicted by SF-FDTD. The analysis for the second order of diffraction is extended, which is considered as a reference for the transmittance obtained by the SF-FDTD scheme for periodic media.
Kinefuchi, K.; Funaki, I.; Shimada, T.; Abe, T.
2012-10-15
Under certain conditions during rocket flights, ionized exhaust plumes from solid rocket motors may interfere with radio frequency transmissions. To understand the relevant physical processes involved in this phenomenon and establish a prediction process for in-flight attenuation levels, we attempted to measure microwave attenuation caused by rocket exhaust plumes in a sea-level static firing test for a full-scale solid propellant rocket motor. The microwave attenuation level was calculated by a coupling simulation of the inviscid-frozen-flow computational fluid dynamics of an exhaust plume and detailed analysis of microwave transmissions by applying a frequency-dependent finite-difference time-domain method with the Drude dispersion model. The calculated microwave attenuation level agreed well with the experimental results, except in the case of interference downstream the Mach disk in the exhaust plume. It was concluded that the coupling estimation method based on the physics of the frozen plasma flow with Drude dispersion would be suitable for actual flight conditions, although the mixing and afterburning in the plume should be considered depending on the flow condition.
Yang, Li; Ge, Manling; Guo, Jia; Wang, Qingmeng; Jiang, Xiaochi; Yan, Weili
2007-01-01
Finite-difference time-domain (FDTD) method and specific absorption rate (SAR) are employed here to study the relationship between the radiation of a mobile handset and the human being health. Nowadays, much more attention has been paid to the simulations for the effects of RF radiation on the particular organs, such as the eyes or the ears because they are more sensitive and more near to the working mobile. In the paper, the simulation of the RF fields is focused on the eyes model and the eyes with glasses of metal frame respectively. A planar inverted F antenna is used as an exposure source at 900 MHz. Under this case, the intensity of the electrical field is calculated and analyzed. Also, SAR is utilized to evaluate the absorption of the organs to the radiation. Through the simulation, the peak values of SAR per 1G tissue at the radiating power being 600mW are obtained. It is concluded that when people are wearing glasses of metal framework, the peak value of SAR is shown to be a little higher than the safety limits. It is suggested that the radiation from the mobile handset do more harmful effect on the eyes with the glasses of metal frameworks.
Gao, YingJie; Yang, HongWei
2014-01-01
An explicit high-order, symplectic, finite-difference time-domain (SFDTD) scheme is applied to a bioelectromagnetic simulation using a simple model of a pregnant woman and her fetus. Compared to the traditional FDTD scheme, this scheme maintains the inherent nature of the Hamilton system and ensures energy conservation numerically and a high precision. The SFDTD scheme is used to predict the specific absorption rate (SAR) for a simple model of a pregnant female woman (month 9) using radio frequency (RF) fields from 1.5 T and 3 T MRI systems (operating at approximately 64 and 128 MHz, respectively). The results suggest that by using a plasma protective layer under the 1.5 T MRI system, the SAR values for the pregnant woman and her fetus are significantly reduced. Additionally, for a 90 degree plasma protective layer, the SAR values are approximately equal to the 120 degree layer and the 180 degree layer, and it is reduced relative to the 60 degree layer. This proves that using a 90 degree plasma protective layer is the most effective and economical angle to use.
NASA Astrophysics Data System (ADS)
Ogino, Akihisa; Naito, Katsutoshi; Terashita, Fumie; Nanko, Shohei; Nagatsu, Masaaki
2005-02-01
In this paper, we presented experimental results on the production of volume wave plasma (VWP) using an internally mounted cylindrical planar microwave launcher, for application to novel plasma processings, such as inner wall coating, impurity-free etching or internal sterilization of medical instruments using VWP. It was demonstrated that the ellipsoidal VWP is produced in front of a microwave launcher in He or Ar gas atmosphere. Numerical analyses of microwave fields radiated from a planar launcher have been carried out using the two-dimensional finite difference time domain (FDTD) method to determine the mechanism of VWP production in middle of the chamber. It was shown that the calculation results showed fairly good agreements with the experimental results measured using a dipole antenna probe. The spatial distributions of plasma density and the temperature of VWP were also measured using a double probe. It was found that the electron density is comparable to or slightly less than cutoff density of 7.4 × 1010 cm-3 corresponding to the microwave frequency of fm=2.45 GHz, and that the electron temperature is approximately 6 eV at the plasma center.
Real-time auto-stereoscopic visualization of 3D medical images
NASA Astrophysics Data System (ADS)
Portoni, Luisa; Patak, Alexandre; Noirard, Pierre; Grossetie, Jean-Claude; van Berkel, Cees
2000-04-01
The work here described regards multi-viewer auto- stereoscopic visualization of 3D models of anatomical structures and organs of the human body. High-quality 3D models of more than 1600 anatomical structures have been reconstructed using the Visualization Toolkit, a freely available C++ class library for 3D graphics and visualization. 2D images used for 3D reconstruction comes from the Visible Human Data Set. Auto-stereoscopic 3D image visualization is obtained using a prototype monitor developed at Philips Research Labs, UK. This special multiview 3D-LCD screen has been connected directly to a SGI workstation, where 3D reconstruction and medical imaging applications are executed. Dedicated software has been developed to implement multiview capability. A number of static or animated contemporary views of the same object can simultaneously be seen on the 3D-LCD screen by several observers, having a real 3D perception of the visualized scene without the use of extra media as dedicated glasses or head-mounted displays. Developed software applications allow real-time interaction with visualized 3D models, didactical animations and movies have been realized as well.
Realization of real-time interactive 3D image holographic display [Invited].
Chen, Jhen-Si; Chu, Daping
2016-01-20
Realization of a 3D image holographic display supporting real-time interaction requires fast actions in data uploading, hologram calculation, and image projection. These three key elements will be reviewed and discussed, while algorithms of rapid hologram calculation will be presented with the corresponding results. Our vision of interactive holographic 3D displays will be discussed.
Application of a novel finite difference method to dynamic crack problems
NASA Technical Reports Server (NTRS)
Chen, Y. M.; Wilkins, M. L.
1976-01-01
A versatile finite difference method (HEMP and HEMP 3D computer programs) was developed originally for solving dynamic problems in continuum mechanics. It was extended to analyze the stress field around cracks in a solid with finite geometry subjected to dynamic loads and to simulate numerically the dynamic fracture phenomena with success. This method is an explicit finite difference method applied to the Lagrangian formulation of the equations of continuum mechanics in two and three space dimensions and time. The calculational grid moves with the material and in this way it gives a more detailed description of the physics of the problem than the Eulerian formulation.
Adaptive finite difference for seismic wavefield modelling in acoustic media.
Yao, Gang; Wu, Di; Debens, Henry Alexander
2016-08-05
Efficient numerical seismic wavefield modelling is a key component of modern seismic imaging techniques, such as reverse-time migration and full-waveform inversion. Finite difference methods are perhaps the most widely used numerical approach for forward modelling, and here we introduce a novel scheme for implementing finite difference by introducing a time-to-space wavelet mapping. Finite difference coefficients are then computed by minimising the difference between the spatial derivatives of the mapped wavelet and the finite difference operator over all propagation angles. Since the coefficients vary adaptively with different velocities and source wavelet bandwidths, the method is capable to maximise the accuracy of the finite difference operator. Numerical examples demonstrate that this method is superior to standard finite difference methods, while comparable to Zhang's optimised finite difference scheme.
Adaptive finite difference for seismic wavefield modelling in acoustic media
Yao, Gang; Wu, Di; Debens, Henry Alexander
2016-01-01
Efficient numerical seismic wavefield modelling is a key component of modern seismic imaging techniques, such as reverse-time migration and full-waveform inversion. Finite difference methods are perhaps the most widely used numerical approach for forward modelling, and here we introduce a novel scheme for implementing finite difference by introducing a time-to-space wavelet mapping. Finite difference coefficients are then computed by minimising the difference between the spatial derivatives of the mapped wavelet and the finite difference operator over all propagation angles. Since the coefficients vary adaptively with different velocities and source wavelet bandwidths, the method is capable to maximise the accuracy of the finite difference operator. Numerical examples demonstrate that this method is superior to standard finite difference methods, while comparable to Zhang’s optimised finite difference scheme. PMID:27491333
Optimized Finite-Difference Coefficients for Hydroacoustic Modeling
NASA Astrophysics Data System (ADS)
Preston, L. A.
2014-12-01
Responsible utilization of marine renewable energy sources through the use of current energy converter (CEC) and wave energy converter (WEC) devices requires an understanding of the noise generation and propagation from these systems in the marine environment. Acoustic noise produced by rotating turbines, for example, could adversely affect marine animals and human-related marine activities if not properly understood and mitigated. We are utilizing a 3-D finite-difference acoustic simulation code developed at Sandia that can accurately propagate noise in the complex bathymetry in the near-shore to open ocean environment. As part of our efforts to improve computation efficiency in the large, high-resolution domains required in this project, we investigate the effects of using optimized finite-difference coefficients on the accuracy of the simulations. We compare accuracy and runtime of various finite-difference coefficients optimized via criteria such as maximum numerical phase speed error, maximum numerical group speed error, and L-1 and L-2 norms of weighted numerical group and phase speed errors over a given spectral bandwidth. We find that those coefficients optimized for L-1 and L-2 norms are superior in accuracy to those based on maximal error and can produce runtimes of 10% of the baseline case, which uses Taylor Series finite-difference coefficients at the Courant time step limit. We will present comparisons of the results for the various cases evaluated as well as recommendations for utilization of the cases studied. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.
Holovideo: Real-time 3D range video encoding and decoding on GPU
NASA Astrophysics Data System (ADS)
Karpinsky, Nikolaus; Zhang, Song
2012-02-01
We present a 3D video-encoding technique called Holovideo that is capable of encoding high-resolution 3D videos into standard 2D videos, and then decoding the 2D videos back into 3D rapidly without significant loss of quality. Due to the nature of the algorithm, 2D video compression such as JPEG encoding with QuickTime Run Length Encoding (QTRLE) can be applied with little quality loss, resulting in an effective way to store 3D video at very small file sizes. We found that under a compression ratio of 134:1, Holovideo to OBJ file format, the 3D geometry quality drops at a negligible level. Several sets of 3D videos were captured using a structured light scanner, compressed using the Holovideo codec, and then uncompressed and displayed to demonstrate the effectiveness of the codec. With the use of OpenGL Shaders (GLSL), the 3D video codec can encode and decode in realtime. We demonstrated that for a video size of 512×512, the decoding speed is 28 frames per second (FPS) with a laptop computer using an embedded NVIDIA GeForce 9400 m graphics processing unit (GPU). Encoding can be done with this same setup at 18 FPS, making this technology suitable for applications such as interactive 3D video games and 3D video conferencing.
Real-time rendering method and performance evaluation of composable 3D lenses for interactive VR.
Borst, Christoph W; Tiesel, Jan-Phillip; Best, Christopher M
2010-01-01
We present and evaluate a new approach for real-time rendering of composable 3D lenses for polygonal scenes. Such lenses, usually called "volumetric lenses," are an extension of 2D Magic Lenses to 3D volumes in which effects are applied to scene elements. Although the composition of 2D lenses is well known, 3D composition was long considered infeasible due to both geometric and semantic complexity. Nonetheless, for a scene with multiple interactive 3D lenses, the problem of intersecting lenses must be considered. Intersecting 3D lenses in meaningful ways supports new interfaces such as hierarchical 3D windows, 3D lenses for managing and composing visualization options, or interactive shader development by direct manipulation of lenses providing component effects. Our 3D volumetric lens approach differs from other approaches and is one of the first to address efficient composition of multiple lenses. It is well-suited to head-tracked VR environments because it requires no view-dependent generation of major data structures, allowing caching and reuse of full or partial results. A Composite Shader Factory module composes shader programs for rendering composite visual styles and geometry of intersection regions. Geometry is handled by Boolean combinations of region tests in fragment shaders, which allows both convex and nonconvex CSG volumes for lens shape. Efficiency is further addressed by a Region Analyzer module and by broad-phase culling. Finally, we consider the handling of order effects for composed 3D lenses.
A novel time-multiplexed autostereoscopic multiview full resolution 3D display
NASA Astrophysics Data System (ADS)
Liou, Jian-Chiun; Chen, Fu-Hao
2012-03-01
Many people believe that in the future, autostereoscopic 3D displays will become a mainstream display type. Achievement of higher quality 3D images requires both higher panel resolution and more viewing zones. Consequently, the transmission bandwidth of the 3D display systems involves enormous amounts of data transfer. We propose and experimentally demonstrate a novel time-multiplexed autostereoscopic multi-view full resolution 3D display based on the lenticular lens array in association with the control of the active dynamic LED backlight. The lenticular lenses of the lens array optical system receive the light and deflect the light into each viewing zone in a time sequence. The crosstalk under different observation scanning angles is showed, including the cases of 4-views field scanning. The crosstalk of any view zones is about 5% respectively; the results are better than other 3D type.
NASA Astrophysics Data System (ADS)
Gainullin, I. K.; Sonkin, M. A.
2015-03-01
A parallelized three-dimensional (3D) time-dependent Schrodinger equation (TDSE) solver for one-electron systems is presented in this paper. The TDSE Solver is based on the finite-difference method (FDM) in Cartesian coordinates and uses a simple and explicit leap-frog numerical scheme. The simplicity of the numerical method provides very efficient parallelization and high performance of calculations using Graphics Processing Units (GPUs). For example, calculation of 106 time-steps on the 1000ṡ1000ṡ1000 numerical grid (109 points) takes only 16 hours on 16 Tesla M2090 GPUs. The TDSE Solver demonstrates scalability (parallel efficiency) close to 100% with some limitations on the problem size. The TDSE Solver is validated by calculation of energy eigenstates of the hydrogen atom (13.55 eV) and affinity level of H- ion (0.75 eV). The comparison with other TDSE solvers shows that a GPU-based TDSE Solver is 3 times faster for the problems of the same size and with the same cost of computational resources. The usage of a non-regular Cartesian grid or problem-specific non-Cartesian coordinates increases this benefit up to 10 times. The TDSE Solver was applied to the calculation of the resonant charge transfer (RCT) in nanosystems, including several related physical problems, such as electron capture during H+-H0 collision and electron tunneling between H- ion and thin metallic island film.
LiveView3D: Real Time Data Visualization for the Aerospace Testing Environment
NASA Technical Reports Server (NTRS)
Schwartz, Richard J.; Fleming, Gary A.
2006-01-01
This paper addresses LiveView3D, a software package and associated data visualization system for use in the aerospace testing environment. The LiveView3D system allows researchers to graphically view data from numerous wind tunnel instruments in real time in an interactive virtual environment. The graphical nature of the LiveView3D display provides researchers with an intuitive view of the measurement data, making it easier to interpret the aerodynamic phenomenon under investigation. LiveView3D has been developed at the NASA Langley Research Center and has been applied in the Langley Unitary Plan Wind Tunnel (UPWT). This paper discusses the capabilities of the LiveView3D system, provides example results from its application in the UPWT, and outlines features planned for future implementation.
Real Time 3D Facial Movement Tracking Using a Monocular Camera
Dong, Yanchao; Wang, Yanming; Yue, Jiguang; Hu, Zhencheng
2016-01-01
The paper proposes a robust framework for 3D facial movement tracking in real time using a monocular camera. It is designed to estimate the 3D face pose and local facial animation such as eyelid movement and mouth movement. The framework firstly utilizes the Discriminative Shape Regression method to locate the facial feature points on the 2D image and fuses the 2D data with a 3D face model using Extended Kalman Filter to yield 3D facial movement information. An alternating optimizing strategy is adopted to fit to different persons automatically. Experiments show that the proposed framework could track the 3D facial movement across various poses and illumination conditions. Given the real face scale the framework could track the eyelid with an error of 1 mm and mouth with an error of 2 mm. The tracking result is reliable for expression analysis or mental state inference. PMID:27463714
Time- and computation-efficient calibration of MEMS 3D accelerometers and gyroscopes.
Stančin, Sara; Tomažič, Sašo
2014-08-13
We propose calibration methods for microelectromechanical system (MEMS) 3D accelerometers and gyroscopes that are efficient in terms of time and computational complexity. The calibration process for both sensors is simple, does not require additional expensive equipment, and can be performed in the field before or between motion measurements. The methods rely on a small number of defined calibration measurements that are used to obtain the values of 12 calibration parameters. This process enables the static compensation of sensor inaccuracies. The values detected by the 3D sensor are interpreted using a generalized 3D sensor model. The model assumes that the values detected by the sensor are equal to the projections of the measured value on the sensor sensitivity axes. Although this finding is trivial for 3D accelerometers, its validity for 3D gyroscopes is not immediately apparent; thus, this paper elaborates on this latter topic. For an example sensor device, calibration parameters were established using calibration measurements of approximately 1.5 min in duration for the 3D accelerometer and 2.5 min in duration for the 3D gyroscope. Correction of each detected 3D value using the established calibration parameters in further measurements requires only nine addition and nine multiplication operations.
Registration of 2D cardiac images to real-time 3D ultrasound volumes for 3D stress echocardiography
NASA Astrophysics Data System (ADS)
Leung, K. Y. Esther; van Stralen, Marijn; Voormolen, Marco M.; van Burken, Gerard; Nemes, Attila; ten Cate, Folkert J.; Geleijnse, Marcel L.; de Jong, Nico; van der Steen, Antonius F. W.; Reiber, Johan H. C.; Bosch, Johan G.
2006-03-01
Three-dimensional (3D) stress echocardiography is a novel technique for diagnosing cardiac dysfunction, by comparing wall motion of the left ventricle under different stages of stress. For quantitative comparison of this motion, it is essential to register the ultrasound data. We propose an intensity based rigid registration method to retrieve two-dimensional (2D) four-chamber (4C), two-chamber, and short-axis planes from the 3D data set acquired in the stress stage, using manually selected 2D planes in the rest stage as reference. The algorithm uses the Nelder-Mead simplex optimization to find the optimal transformation of one uniform scaling, three rotation, and three translation parameters. We compared registration using the SAD, SSD, and NCC metrics, performed on four resolution levels of a Gaussian pyramid. The registration's effectiveness was assessed by comparing the 3D positions of the registered apex and mitral valve midpoints and 4C direction with the manually selected results. The registration was tested on data from 20 patients. Best results were found using the NCC metric on data downsampled with factor two: mean registration errors were 8.1mm, 5.4mm, and 8.0° in the apex position, mitral valve position, and 4C direction respectively. The errors were close to the interobserver (7.1mm, 3.8mm, 7.4°) and intraobserver variability (5.2mm, 3.3mm, 7.0°), and better than the error before registration (9.4mm, 9.0mm, 9.9°). We demonstrated that the registration algorithm visually and quantitatively improves the alignment of rest and stress data sets, performing similar to manual alignment. This will improve automated analysis in 3D stress echocardiography.
Upwind Compact Finite Difference Schemes
NASA Astrophysics Data System (ADS)
Christie, I.
1985-07-01
It was shown by Ciment, Leventhal, and Weinberg ( J. Comput. Phys.28 (1978), 135) that the standard compact finite difference scheme may break down in convection dominated problems. An upwinding of the method, which maintains the fourth order accuracy, is suggested and favorable numerical results are found for a number of test problems.
Advanced Visualization of Experimental Data in Real Time Using LiveView3D
NASA Technical Reports Server (NTRS)
Schwartz, Richard J.; Fleming, Gary A.
2006-01-01
LiveView3D is a software application that imports and displays a variety of wind tunnel derived data in an interactive virtual environment in real time. LiveView3D combines the use of streaming video fed into a three-dimensional virtual representation of the test configuration with networked communications to the test facility Data Acquisition System (DAS). This unified approach to real time data visualization provides a unique opportunity to comprehend very large sets of diverse forms of data in a real time situation, as well as in post-test analysis. This paper describes how LiveView3D has been implemented to visualize diverse forms of aerodynamic data gathered during wind tunnel experiments, most notably at the NASA Langley Research Center Unitary Plan Wind Tunnel (UPWT). Planned future developments of the LiveView3D system are also addressed.
Real-time 3D video compression for tele-immersive environments
NASA Astrophysics Data System (ADS)
Yang, Zhenyu; Cui, Yi; Anwar, Zahid; Bocchino, Robert; Kiyanclar, Nadir; Nahrstedt, Klara; Campbell, Roy H.; Yurcik, William
2006-01-01
Tele-immersive systems can improve productivity and aid communication by allowing distributed parties to exchange information via a shared immersive experience. The TEEVE research project at the University of Illinois at Urbana-Champaign and the University of California at Berkeley seeks to foster the development and use of tele-immersive environments by a holistic integration of existing components that capture, transmit, and render three-dimensional (3D) scenes in real time to convey a sense of immersive space. However, the transmission of 3D video poses significant challenges. First, it is bandwidth-intensive, as it requires the transmission of multiple large-volume 3D video streams. Second, existing schemes for 2D color video compression such as MPEG, JPEG, and H.263 cannot be applied directly because the 3D video data contains depth as well as color information. Our goal is to explore from a different angle of the 3D compression space with factors including complexity, compression ratio, quality, and real-time performance. To investigate these trade-offs, we present and evaluate two simple 3D compression schemes. For the first scheme, we use color reduction to compress the color information, which we then compress along with the depth information using zlib. For the second scheme, we use motion JPEG to compress the color information and run-length encoding followed by Huffman coding to compress the depth information. We apply both schemes to 3D videos captured from a real tele-immersive environment. Our experimental results show that: (1) the compressed data preserves enough information to communicate the 3D images effectively (min. PSNR > 40) and (2) even without inter-frame motion estimation, very high compression ratios (avg. > 15) are achievable at speeds sufficient to allow real-time communication (avg. ~ 13 ms per 3D video frame).
NASA Astrophysics Data System (ADS)
Werner, C. L.; Wegmüller, U.; Strozzi, T.
2012-12-01
The Lost-Hills oil field located in Kern County,California ranks sixth in total remaining reserves in California. Hundreds of densely packed wells characterize the field with one well every 5000 to 20000 square meters. Subsidence due to oil extraction can be grater than 10 cm/year and is highly variable both in space and time. The RADARSAT-1 SAR satellite collected data over this area with a 24-day repeat during a 2 year period spanning 2002-2004. Relatively high interferometric correlation makes this an excellent region for development and test of deformation time-series inversion algorithms. Errors in deformation time series derived from a stack of differential interferograms are primarily due to errors in the digital terrain model, interferometric baselines, variability in tropospheric delay, thermal noise and phase unwrapping errors. Particularly challenging is separation of non-linear deformation from variations in troposphere delay and phase unwrapping errors. In our algorithm a subset of interferometric pairs is selected from a set of N radar acquisitions based on criteria of connectivity, time interval, and perpendicular baseline. When possible, the subset consists of temporally connected interferograms, otherwise the different groups of interferograms are selected to overlap in time. The maximum time interval is constrained to be less than a threshold value to minimize phase gradients due to deformation as well as minimize temporal decorrelation. Large baselines are also avoided to minimize the consequence of DEM errors on the interferometric phase. Based on an extension of the SVD based inversion described by Lee et al. ( USGS Professional Paper 1769), Schmidt and Burgmann (JGR, 2003), and the earlier work of Berardino (TGRS, 2002), our algorithm combines estimation of the DEM height error with a set of finite difference smoothing constraints. A set of linear equations are formulated for each spatial point that are functions of the deformation velocities
A real-time noise filtering strategy for photon counting 3D imaging lidar.
Zhang, Zijing; Zhao, Yuan; Zhang, Yong; Wu, Long; Su, Jianzhong
2013-04-22
For a direct-detection 3D imaging lidar, the use of Geiger mode avalanche photodiode (Gm-APD) could greatly enhance the detection sensitivity of the lidar system since each range measurement requires a single detected photon. Furthermore, Gm-APD offers significant advantages in reducing the size, mass, power and complexity of the system. However the inevitable noise, including the background noise, the dark count noise and so on, remains a significant challenge to obtain a clear 3D image of the target of interest. This paper presents a smart strategy, which can filter out false alarms in the stage of acquisition of raw time of flight (TOF) data and obtain a clear 3D image in real time. As a result, a clear 3D image is taken from the experimental system despite the background noise of the sunny day.
Real-time volume rendering of 4D image using 3D texture mapping
NASA Astrophysics Data System (ADS)
Hwang, Jinwoo; Kim, June-Sic; Kim, Jae Seok; Kim, In Young; Kim, Sun Il
2001-05-01
Four dimensional image is 3D volume data that varies with time. It is used to express deforming or moving object in virtual surgery of 4D ultrasound. It is difficult to render 4D image by conventional ray-casting or shear-warp factorization methods because of their time-consuming rendering time or pre-processing stage whenever the volume data are changed. Even 3D texture mapping is used, repeated volume loading is also time-consuming in 4D image rendering. In this study, we propose a method to reduce data loading time using coherence between currently loaded volume and previously loaded volume in order to achieve real time rendering based on 3D texture mapping. Volume data are divided into small bricks and each brick being loaded is tested for similarity to one which was already loaded in memory. If the brick passed the test, it is defined as 3D texture by OpenGL functions. Later, the texture slices of the brick are mapped into polygons and blended by OpenGL blending functions. All bricks undergo this test. Continuously deforming fifty volumes are rendered in interactive time with SGI ONYX. Real-time volume rendering based on 3D texture mapping is currently available on PC.
NASA Astrophysics Data System (ADS)
Palka, N.; Panowicz, R.; Ospald, F.; Beigang, R.
2015-08-01
An ultra-high molecular weight polyethylene composite sample totally punctured by a projectile was examined by THz TDS raster scanning method in reflection configuration. The scanning results correctly match the distribution of delaminations inside the sample, which was proven with cross-sectional and frontal views after waterjet cutting. For further analysis, a signal-processing algorithm based on the deconvolution method was developed and the modified reference signal was used to reduce disturbances. The complex refractive index of the sample was determined by transmission TDS technique and was later used for the simulation of pulse propagation by the finite difference time domain method. These simulations verified the correctness of the proposed method and showed its constraints. Using the proposed algorithm, the ambiguous raw THz image was converted into a binary 3D image of the sample, which consists only of two areas: sample—polyethylene and delamination—air. As a result, a clear image of the distribution of delaminations with their spatial extent was obtained which can be used for further comparative analysis. The limitation of the proposed method is that parts of the central area of the puncture cannot be analyzed because tilted layers deflect the incident signal.
Real-Time 3D Contrast-Enhanced Transcranial Ultrasound and Aberration Correction
Ivancevich, Nikolas M.; Pinton, Gianmarco F.; Nicoletto, Heather A.; Bennett, Ellen; Laskowitz, Daniel T.; Smith, Stephen W.
2008-01-01
Contrast-enhanced (CE) transcranial ultrasound (US) and reconstructed 3D transcranial ultrasound have shown advantages over traditional methods in a variety of cerebrovascular diseases. We present the results from a novel ultrasound technique, namely real-time 3D contrast-enhanced transcranial ultrasound. Using real-time 3D (RT3D) ultrasound and micro-bubble contrast agent, we scanned 17 healthy volunteers via a single temporal window and 9 via the sub-occipital window and report our detection rates for the major cerebral vessels. In 71% of subjects, both of our observers identified the ipsilateral circle of Willis from the temporal window, and in 59% we imaged the entire circle of Willis. From the sub-occipital window, both observers detected the entire vertebrobasilar circulation in 22% of subjects, and in 44% the basilar artery. After performing phase aberration correction on one subject, we were able to increase the diagnostic value of the scan, detecting a vessel not present in the uncorrected scan. These preliminary results suggest that RT3D CE transcranial US and RT3D CE transcranial US with phase aberration correction have the potential to greatly impact the field of neurosonology. PMID:18395321
Wada, Yuji; Koyama, Daisuke; Nakamura, Kentaro
2014-12-01
The direct finite-difference fluid simulation of acoustic streaming on a fine-meshed three-dimensional model using a graphics processing unit (GPU)-based calculation array is discussed. Airflows are induced by an acoustic traveling wave when an intense sound field is generated in a gap between a bending transducer and a reflector. The calculation results showed good agreement with measurements in a pressure distribution. Several flow vortices were observed near the boundary layer of the reflector and the transducer, which have often been observed near the boundary of acoustic tubes, but have not been observed in previous calculations for this type of ultrasonic air pump.
3D parallel inversion of time-domain airborne EM data
NASA Astrophysics Data System (ADS)
Liu, Yun-He; Yin, Chang-Chun; Ren, Xiu-Yan; Qiu, Chang-Kai
2016-12-01
To improve the inversion accuracy of time-domain airborne electromagnetic data, we propose a parallel 3D inversion algorithm for airborne EM data based on the direct Gauss-Newton optimization. Forward modeling is performed in the frequency domain based on the scattered secondary electrical field. Then, the inverse Fourier transform and convolution of the transmitting waveform are used to calculate the EM responses and the sensitivity matrix in the time domain for arbitrary transmitting waves. To optimize the computational time and memory requirements, we use the EM "footprint" concept to reduce the model size and obtain the sparse sensitivity matrix. To improve the 3D inversion, we use the OpenMP library and parallel computing. We test the proposed 3D parallel inversion code using two synthetic datasets and a field dataset. The time-domain airborne EM inversion results suggest that the proposed algorithm is effective, efficient, and practical.
Linear-time protein 3-D structure searching with insertions and deletions
2010-01-01
Background Two biomolecular 3-D structures are said to be similar if the RMSD (root mean square deviation) between the two molecules' sequences of 3-D coordinates is less than or equal to some given constant bound. Tools for searching for similar structures in biomolecular 3-D structure databases are becoming increasingly important in the structural biology of the post-genomic era. Results We consider an important, fundamental problem of reporting all substructures in a 3-D structure database of chain molecules (such as proteins) which are similar to a given query 3-D structure, with consideration of indels (i.e., insertions and deletions). This problem has been believed to be very difficult but its exact computational complexity has not been known. In this paper, we first prove that the problem in unbounded dimensions is NP-hard. We then propose a new algorithm that dramatically improves the average-case time complexity of the problem in 3-D in case the number of indels k is bounded by a constant. Our algorithm solves the above problem for a query of size m and a database of size N in average-case O(N) time, whereas the time complexity of the previously best algorithm was O(Nmk+1). Conclusions Our results show that although the problem of searching for similar structures in a database based on the RMSD measure with indels is NP-hard in the case of unbounded dimensions, it can be solved in 3-D by a simple average-case linear time algorithm when the number of indels is bounded by a constant. PMID:20047663
Towards real-time change detection in videos based on existing 3D models
NASA Astrophysics Data System (ADS)
Ruf, Boitumelo; Schuchert, Tobias
2016-10-01
Image based change detection is of great importance for security applications, such as surveillance and reconnaissance, in order to find new, modified or removed objects. Such change detection can generally be performed by co-registration and comparison of two or more images. However, existing 3d objects, such as buildings, may lead to parallax artifacts in case of inaccurate or missing 3d information, which may distort the results in the image comparison process, especially when the images are acquired from aerial platforms like small unmanned aerial vehicles (UAVs). Furthermore, considering only intensity information may lead to failures in detection of changes in the 3d structure of objects. To overcome this problem, we present an approach that uses Structure-from-Motion (SfM) to compute depth information, with which a 3d change detection can be performed against an existing 3d model. Our approach is capable of the change detection in real-time. We use the input frames with the corresponding camera poses to compute dense depth maps by an image-based depth estimation algorithm. Additionally we synthesize a second set of depth maps, by rendering the existing 3d model from the same camera poses as those of the image-based depth map. The actual change detection is performed by comparing the two sets of depth maps with each other. Our method is evaluated on synthetic test data with corresponding ground truth as well as on real image test data.
Prestack reverse time migration for 3D marine reflection seismic data
Jang, Seonghyung; Kim, Taeyoun
2015-03-10
Prestack reverse time migration (RTM) is a method for imaging the subsurface using the inner product of wavefield extrapolation in shot domain and in receiver domain. It is well known that RTM is better for preserving amplitudes and phases than other prestack migrations. Since 3D seismic data is huge data volume and it needs heavy computing works, it requires parallel computing in order to have a meaningful depth image of the 3D subsurface. We implemented a parallelized version of 3D RTM for prestack depth migration. The results of numerical example for 3D SEG/EAGE salt model showed good agreement with the original geological model. We applied RTM to offshore 3D seismic reflection data. The study area is 12 × 25 km with 120 survey lines. Shot and receiver spacing is 25 m and 12.5 m. The line spacing is 100 m. Shot gathers were preprocessed to enhance signal to noise ratio and velocity model was calculated from conventional stack velocity. Both of them were used to obtain 3D image using RTM. The results show reasonable subsurface image.
Real-time 3D human capture system for mixed-reality art and entertainment.
Nguyen, Ta Huynh Duy; Qui, Tran Cong Thien; Xu, Ke; Cheok, Adrian David; Teo, Sze Lee; Zhou, ZhiYing; Mallawaarachchi, Asitha; Lee, Shang Ping; Liu, Wei; Teo, Hui Siang; Thang, Le Nam; Li, Yu; Kato, Hirokazu
2005-01-01
A real-time system for capturing humans in 3D and placing them into a mixed reality environment is presented in this paper. The subject is captured by nine cameras surrounding her. Looking through a head-mounted-display with a camera in front pointing at a marker, the user can see the 3D image of this subject overlaid onto a mixed reality scene. The 3D images of the subject viewed from this viewpoint are constructed using a robust and fast shape-from-silhouette algorithm. The paper also presents several techniques to produce good quality and speed up the whole system. The frame rate of our system is around 25 fps using only standard Intel processor-based personal computers. Besides a remote live 3D conferencing and collaborating system, we also describe an application of the system in art and entertainment, named Magic Land, which is a mixed reality environment where captured avatars of human and 3D computer generated virtual animations can form an interactive story and play with each other. This system demonstrates many technologies in human computer interaction: mixed reality, tangible interaction, and 3D communication. The result of the user study not only emphasizes the benefits, but also addresses some issues of these technologies.
Real-time 3D surface-image-guided beam setup in radiotherapy of breast cancer
Djajaputra, David; Li Shidong
2005-01-01
We describe an approach for external beam radiotherapy of breast cancer that utilizes the three-dimensional (3D) surface information of the breast. The surface data of the breast are obtained from a 3D optical camera that is rigidly mounted on the ceiling of the treatment vault. This 3D camera utilizes light in the visible range therefore it introduces no ionization radiation to the patient. In addition to the surface topographical information of the treated area, the camera also captures gray-scale information that is overlaid on the 3D surface image. This allows us to visualize the skin markers and automatically determine the isocenter position and the beam angles in the breast tangential fields. The field sizes and shapes of the tangential, supraclavicular, and internal mammary gland fields can all be determined according to the 3D surface image of the target. A least-squares method is first introduced for the tangential-field setup that is useful for compensation of the target shape changes. The entire process of capturing the 3D surface data and subsequent calculation of beam parameters typically requires less than 1 min. Our tests on phantom experiments and patient images have achieved the accuracy of 1 mm in shift and 0.5 deg. in rotation. Importantly, the target shape and position changes in each treatment session can both be corrected through this real-time image-guided system.
Real-time 3D reconstruction for collision avoidance in interventional environments.
Ladikos, Alexander; Benhimane, Selim; Navab, Nassir
2008-01-01
With the increased presence of automated devices such as C-arms and medical robots and the introduction of a multitude of surgical tools, navigation systems and patient monitoring devices, collision avoidance has become an issue of practical value in interventional environments. In this paper, we present a real-time 3D reconstruction system for interventional environments which aims at predicting collisions by building a 3D representation of all the objects in the room. The 3D reconstruction is used to determine whether other objects are in the working volume of the device and to alert the medical staff before a collision occurs. In the case of C-arms, this allows faster rotational and angular movement which could for instance be used in 3D angiography to obtain a better reconstruction of contrasted vessels. The system also prevents staff to unknowingly enter the working volume of a device. This is of relevance in complex environments with many devices. The recovered 3D representation also opens the path to many new applications utilizing this data such as workflow analysis, 3D video generation or interventional room planning. To validate our claims, we performed several experiments with a real C-arm that show the validity of the approach. This system is currently being transferred to an interventional room in our university hospital.
2011-09-01
time to forward model a travel-time data set when a fully 3D raytracing methods is used. An efficient alternative to full 3D raytracing is travel...when a fully 3D raytracing methods is used. An efficient alternative to full 3D raytracing is travel-time linearization, which approximates the...numerical methods are available for raytracing and travel-time calculation in 3D Earth models, such as the finite-difference eikonal method (e.g
FPGA-based real-time anisotropic diffusion filtering of 3D ultrasound images
NASA Astrophysics Data System (ADS)
Castro-Pareja, Carlos R.; Dandekar, Omkar S.; Shekhar, Raj
2005-02-01
Three-dimensional ultrasonic imaging, especially the emerging real-time version of it, is particularly valuable in medical applications such as echocardiography, obstetrics and surgical navigation. A known problem with ultrasound images is their high level of speckle noise. Anisotropic diffusion filtering has been shown to be effective in enhancing the visual quality of 3D ultrasound images and as preprocessing prior to advanced image processing. However, due to its arithmetic complexity and the sheer size of 3D ultrasound images, it is not possible to perform online, real-time anisotropic diffusion filtering using standard software implementations. We present an FPGA-based architecture that allows performing anisotropic diffusion filtering of 3D images at acquisition rates, thus enabling the use of this filtering technique in real-time applications, such as visualization, registration and volume rendering.
Okamura, Yoshimasa; Yamamoto, Yoshito; Fujita, Kazuhiro; Miyoshi, Taiki; Teramoto, Koji; Kawaguchi, Hideki; Kagami, Shin; Furukawa, Masakazu
2007-07-15
Numerical studies of microwave propagation properties in a conical horn and an adjustable waveguides, and for plasmas generated under disk-plate windows of a 220 mm diameter and in a vacuum chamber are studied by a finite-difference time-domain (FDTD) method including plasma equations. In the numerical studies, a TM01-mode microwave of 2.45 GHz at a power of 1 kW is supplied from the top of the conical horn waveguide. In addition, numerical results by the FDTD method are compared with experimental results, and a validity of the numerical results is investigated. From the numerical results, it is found that the TM01-mode microwave changes its field shape and propagates along inner surfaces of the conical horn and the adjustable waveguides. Then electromagnetic fields of the TM01-mode microwave concentrate at the center surfaces of the disk-plate windows [quartz ({epsilon}{sub r}=3.8), alumina ({epsilon}{sub r}=9.7), and WG20 ({epsilon}{sub r}=20.0)]. A diameter of higher concentration is within 80 mm, and the orientation of electric field is almost vertical to the disk-plate window. The diameters within 80 mm are equivalent to a diameter at a higher electron density in an oxygen plasma experiment in the volume mode at 1 kW and 133 Pa with a quartz window. When heights of the adjustable waveguide are changed from 64 to 244 mm, peaks of electric fields in the heights, where microwave power is estimated to be strongly absorbed into the plasmas, appear and peak positions of the electric fields are observed periodically in surface-wave mode plasmas as well as the volume mode plasmas. Heights of the peaks increase with increasing dielectric constant and peak-to-peak distances of the peak positions decrease with increasing dielectric constant. The peak positions agree to the minimum microwave power reflections tuned by a combination of an autotuning unit and adjustable waveguide heights in experiments. Furthermore, peak positions of relatively absorbed microwave powers in
High-resolution real-time 3D shape measurement on a portable device
NASA Astrophysics Data System (ADS)
Karpinsky, Nikolaus; Hoke, Morgan; Chen, Vincent; Zhang, Song
2013-09-01
Recent advances in technology have enabled the acquisition of high-resolution 3D models in real-time though the use of structured light scanning techniques. While these advances are impressive, they require large amounts of computing power, thus being limited to using large desktop computers with high end CPUs and sometimes GPUs. This is undesirable in making high-resolution real-time 3D scanners ubiquitous in our mobile lives. To address this issue, this work describes and demonstrates a real-time 3D scanning system that is realized on a mobile device, namely a laptop computer, which can achieve speeds of 20fps 3D at a resolution of 640x480 per frame. By utilizing a graphics processing unit (GPU) as a multipurpose parallel processor, along with a parallel phase shifting technique, we are able to realize the entire 3D processing pipeline in parallel. To mitigate high speed camera transfer problems, which typically require a dedicated frame grabber, we make use of USB 3.0 along with direct memory access (DMA) to transfer camera images to the GPU. To demonstrate the effectiveness of the technique, we experiment with the scanner on both static geometry of a statue and dynamic geometry of a deforming material sample in front of the system.
GPU-accelerated 3D mipmap for real-time visualization of ultrasound volume data.
Kwon, Koojoo; Lee, Eun-Seok; Shin, Byeong-Seok
2013-10-01
Ultrasound volume rendering is an efficient method for visualizing the shape of fetuses in obstetrics and gynecology. However, in order to obtain high-quality ultrasound volume rendering, noise removal and coordinates conversion are essential prerequisites. Ultrasound data needs to undergo a noise filtering process; otherwise, artifacts and speckle noise cause quality degradation in the final images. Several two-dimensional (2D) noise filtering methods have been used to reduce this noise. However, these 2D filtering methods ignore relevant information in-between adjacent 2D-scanned images. Although three-dimensional (3D) noise filtering methods are used, they require more processing time than 2D-based methods. In addition, the sampling position in the ultrasonic volume rendering process has to be transformed between conical ultrasound coordinates and Cartesian coordinates. We propose a 3D-mipmap-based noise reduction method that uses graphics hardware, as a typical 3D mipmap requires less time to be generated and less storage capacity. In our method, we compare the density values of the corresponding points on consecutive mipmap levels and find the noise area using the difference in the density values. We also provide a noise detector for adaptively selecting the mipmap level using the difference of two mipmap levels. Our method can visualize 3D ultrasound data in real time with 3D noise filtering.
3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics
Sison, Miguel; Chakrabortty, Sabyasachi; Extermann, Jérôme; Nahas, Amir; James Marchand, Paul; Lopez, Antonio; Weil, Tanja; Lasser, Theo
2017-01-01
We present a 3D time-lapse imaging method for monitoring mitochondrial dynamics in living HeLa cells based on photothermal optical coherence microscopy and using novel surface functionalization of gold nanoparticles. The biocompatible protein-based biopolymer coating contains multiple functional groups which impart better cellular uptake and mitochondria targeting efficiency. The high stability of the gold nanoparticles allows continuous imaging over an extended time up to 3000 seconds without significant cell damage. By combining temporal autocorrelation analysis with a classical diffusion model, we quantify mitochondrial dynamics and cast these results into 3D maps showing the heterogeneity of diffusion parameters across the whole cell volume. PMID:28230188
3D Time-lapse Imaging and Quantification of Mitochondrial Dynamics
NASA Astrophysics Data System (ADS)
Sison, Miguel; Chakrabortty, Sabyasachi; Extermann, Jérôme; Nahas, Amir; James Marchand, Paul; Lopez, Antonio; Weil, Tanja; Lasser, Theo
2017-02-01
We present a 3D time-lapse imaging method for monitoring mitochondrial dynamics in living HeLa cells based on photothermal optical coherence microscopy and using novel surface functionalization of gold nanoparticles. The biocompatible protein-based biopolymer coating contains multiple functional groups which impart better cellular uptake and mitochondria targeting efficiency. The high stability of the gold nanoparticles allows continuous imaging over an extended time up to 3000 seconds without significant cell damage. By combining temporal autocorrelation analysis with a classical diffusion model, we quantify mitochondrial dynamics and cast these results into 3D maps showing the heterogeneity of diffusion parameters across the whole cell volume.
Time-lapse 3-D seismic imaging of shallow subsurface contaminant flow.
McKenna, J; Sherlock, D; Evans, B
2001-12-01
This paper presents a physical modelling study outlining a technique whereby buoyant contaminant flow within water-saturated unconsolidated sand was remotely monitored utilizing the time-lapse 3-D (TL3-D) seismic response. The controlled temperature and pressure conditions, along with the high level of acquisition repeatability attainable using sandbox physical models, allow the TL3-D seismic response to pore fluid movement to be distinguished from all other effects. TL3-D seismic techniques are currently being developed to monitor hydrocarbon reserves within producing reservoirs in an endeavour to improve overall recovery. However, in many ways, sandbox models under atmospheric conditions more accurately simulate the shallow subsurface than petroleum reservoirs. For this reason, perhaps the greatest application for analogue sandbox modelling is to improve our understanding of shallow groundwater and environmental flow mechanisms. Two fluid flow simulations were conducted whereby air and kerosene were injected into separate water-saturated unconsolidated sand models. In both experiments, a base 3-D seismic volume was recorded and compared with six later monitor surveys recorded while the injection program was conducted. Normal incidence amplitude and P-wave velocity information were extracted from the TL3-D seismic data to provide visualization of contaminant migration. Reflection amplitudes displayed qualitative areal distribution of fluids when a suitable impedance contrast existed between pore fluids. TL3-D seismic reflection tomography can potentially monitor the change in areal distribution of fluid contaminants over time, indicating flow patterns. However, other research and this current work have not established a quantifiable relationship between either normal reflection amplitudes and attenuation and fluid saturation. Generally, different pore fluids will have unique seismic velocities due to differences in compressibility and density. The predictable
Finite difference neuroelectric modeling software.
Dang, Hung V; Ng, Kwong T
2011-06-15
This paper describes a finite difference neuroelectric modeling software (FNS), written in C and MATLAB, which can be executed as a standalone program or integrated with other packages for electroencephalography (EEG) analysis. The package from the Oxford Center for Functional MRI of the Brain (FMRIB), FMRIB Software Library (FSL), is used to segment the anatomical magnetic resonance (MR) image for realistic head modeling. The EEG electrode array is fitted to the realistic head model using the Bioelectromagnetism MATLAB toolbox. The finite difference formulation for a general inhomogeneous anisotropic body is used to obtain the system matrix equation, which is then solved using the conjugate gradient algorithm. The reciprocity theorem is utilized to limit the number of required forward solutions to N-1, where N is the number of electrodes. Results show that the forward solver only requires 500 MB of random-access memory (RAM) for a realistic 256×256×256 head model and that the software can be conveniently combined with inverse algorithms such as beamformers and MUSIC. The software is freely available under the GNU Public License.
IMPROVEMENTS TO THE TIME STEPPING ALGORITHM OF RELAP5-3D
Cumberland, R.; Mesina, G.
2009-01-01
The RELAP5-3D time step method is used to perform thermo-hydraulic and neutronic simulations of nuclear reactors and other devices. It discretizes time and space by numerically solving several differential equations. Previously, time step size was controlled by halving or doubling the size of a previous time step. This process caused the code to run slower than it potentially could. In this research project, the RELAP5-3D time step method was modifi ed to allow a new method of changing time steps to improve execution speed and to control error. The new RELAP5-3D time step method being studied involves making the time step proportional to the material courant limit (MCL), while insuring that the time step does not increase by more than a factor of two between advancements. As before, if a step fails or mass error is excessive, the time step is cut in half. To examine performance of the new method, a measure of run time and a measure of error were plotted against a changing MCL proportionality constant (m) in seven test cases. The removal of the upper time step limit produced a small increase in error, but a large decrease in execution time. The best value of m was found to be 0.9. The new algorithm is capable of producing a signifi cant increase in execution speed, with a relatively small increase in mass error. The improvements made are now under consideration for inclusion as a special option in the RELAP5-3D production code.
Generalized Hough transform based time invariant action recognition with 3D pose information
NASA Astrophysics Data System (ADS)
Muench, David; Huebner, Wolfgang; Arens, Michael
2014-10-01
Human action recognition has emerged as an important field in the computer vision community due to its large number of applications such as automatic video surveillance, content based video-search and human robot interaction. In order to cope with the challenges that this large variety of applications present, recent research has focused more on developing classifiers able to detect several actions in more natural and unconstrained video sequences. The invariance discrimination tradeoff in action recognition has been addressed by utilizing a Generalized Hough Transform. As a basis for action representation we transform 3D poses into a robust feature space, referred to as pose descriptors. For each action class a one-dimensional temporal voting space is constructed. Votes are generated from associating pose descriptors with their position in time relative to the end of an action sequence. Training data consists of manually segmented action sequences. In the detection phase valid human 3D poses are assumed as input, e.g. originating from 3D sensors or monocular pose reconstruction methods. The human 3D poses are normalized to gain view-independence and transformed into (i) relative limb-angle space to ensure independence of non-adjacent joints or (ii) geometric features. In (i) an action descriptor consists of the relative angles between limbs and their temporal derivatives. In (ii) the action descriptor consists of different geometric features. In order to circumvent the problem of time-warping we propose to use a codebook of prototypical 3D poses which is generated from sample sequences of 3D motion capture data. This idea is in accordance with the concept of equivalence classes in action space. Results of the codebook method are presented using the Kinect sensor and the CMU Motion Capture Database.
Tan, Sirui; Huang, Lianjie
2014-11-01
For modeling scalar-wave propagation in geophysical problems using finite-difference schemes, optimizing the coefficients of the finite-difference operators can reduce numerical dispersion. Most optimized finite-difference schemes for modeling seismic-wave propagation suppress only spatial but not temporal dispersion errors. We develop a novel optimized finite-difference scheme for numerical scalar-wave modeling to control dispersion errors not only in space but also in time. Our optimized scheme is based on a new stencil that contains a few more grid points than the standard stencil. We design an objective function for minimizing relative errors of phase velocities of waves propagating in all directions within a given range of wavenumbers. Dispersion analysis and numerical examples demonstrate that our optimized finite-difference scheme is computationally up to 2.5 times faster than the optimized schemes using the standard stencil to achieve the similar modeling accuracy for a given 2D or 3D problem. Compared with the high-order finite-difference scheme using the same new stencil, our optimized scheme reduces 50 percent of the computational cost to achieve the similar modeling accuracy. This new optimized finite-difference scheme is particularly useful for large-scale 3D scalar-wave modeling and inversion.
Hierarchical storage and visualization of real-time 3D data
NASA Astrophysics Data System (ADS)
Parry, Mitchell; Hannigan, Brendan; Ribarsky, William; Shaw, Christopher D.; Faust, Nickolas L.
2001-08-01
In this paper 'real-time 3D data' refers to volumetric data that are acquired and used as they are produced. Large scale, real-time data are difficult to store and analyze, either visually or by some other means, within the time frames required. Yet this is often quite important to do when decision-makers must receive and quickly act on new information. An example is weather forecasting, where forecasters must act on information received on severe storm development and movement. To meet the real-time requirements crude heuristics are often used to gather information from the original data. This is in spite of the fact that better and better real-time data are becoming available, the full use of which could significantly improve decisions. The work reported here addresses these issues by providing comprehensive data acquisition, analysis, and storage components with time budgets for the data management of each component. These components are put into a global geospatial hierarchical structure. The volumetric data are placed into this global structure, and it is shown how levels of detail can be derived and used within this structure. A volumetric visualization procedure is developed that conforms to the hierarchical structure and uses the levels of detail. These general methods are focused on the specific case of the VGIS global hierarchical structure and rendering system,. The real-time data considered are from collections of time- dependent 3D Doppler radars although the methods described here apply more generally to time-dependent volumetric data. This paper reports on the design and construction of the above hierarchical structures and volumetric visualizations. It also reports result for the specific application of 3D Doppler radar displayed over photo textured terrain height fields. Results are presented results for the specific application of 3D Doppler radar displayed over photo textured terrain height fields. Results are presented for display of time
Real-time 3-d intracranial ultrasound with an endoscopic matrix array transducer.
Light, Edward D; Mukundan, Srinivasan; Wolf, Patrick D; Smith, Stephen W
2007-08-01
A transducer originally designed for transesophageal echocardiography (TEE) was adapted for real-time volumetric endoscopic imaging of the brain. The transducer consists of a 36 x 36 array with an interelement spacing of 0.18 mm. There are 504 transmitting and 252 receive channels placed in a regular pattern in the array. The operating frequency is 4.5 MHz with a -6 dB bandwidth of 30%. The transducer is fabricated on a 10-layer flexible circuit from Microconnex (Snoqualmie, WA, USA). The purpose of this study is to evaluate the clinical feasibility of real-time 3-D intracranial ultrasound with this device. The Volumetrics Medical Imaging (Durham, NC, USA) 3-D scanner was used to obtain images in a canine model. A transcalvarial acoustic window was created under general anesthesia in the animal laboratory by placing a 10-mm burr hole in the high parietal calvarium of a 50-kg canine subject. The burr-hole was placed in a left parasagittal location to avoid the sagittal sinus, and the transducer was placed against the intact dura mater for ultrasound imaging. Images of the lateral ventricles were produced, including real-time 3-D guidance of a needle puncture of one ventricle. In a second canine subject, contrast-enhanced 3-D Doppler color flow images were made of the cerebral vessels including the complete Circle of Willis. Clinical applications may include real-time 3-D guidance of cerebrospinal fluid extraction from the lateral ventricles and bedside evaluation of critically ill patients where computed tomography and magnetic resonance imaging techniques are unavailable.
Note: Time-gated 3D single quantum dot tracking with simultaneous spinning disk imaging
DeVore, M. S.; Stich, D. G.; Keller, A. M.; Phipps, M. E.; Hollingsworth, J. A.; Goodwin, P. M.; Werner, J. H.; Cleyrat, C.; Lidke, D. S.; Wilson, B. S.
2015-12-15
We describe recent upgrades to a 3D tracking microscope to include simultaneous Nipkow spinning disk imaging and time-gated single-particle tracking (SPT). Simultaneous 3D molecular tracking and spinning disk imaging enable the visualization of cellular structures and proteins around a given fluorescently labeled target molecule. The addition of photon time-gating to the SPT hardware improves signal to noise by discriminating against Raman scattering and short-lived fluorescence. In contrast to camera-based SPT, single-photon arrival times are recorded, enabling time-resolved spectroscopy (e.g., measurement of fluorescence lifetimes and photon correlations) to be performed during single molecule/particle tracking experiments.
Ultra-Wideband Time-Difference-of-Arrival High Resolution 3D Proximity Tracking System
NASA Technical Reports Server (NTRS)
Ni, Jianjun; Arndt, Dickey; Ngo, Phong; Phan, Chau; Dekome, Kent; Dusl, John
2010-01-01
This paper describes a research and development effort for a prototype ultra-wideband (UWB) tracking system that is currently under development at NASA Johnson Space Center (JSC). The system is being studied for use in tracking of lunar./Mars rovers and astronauts during early exploration missions when satellite navigation systems are not available. U IATB impulse radio (UWB-IR) technology is exploited in the design and implementation of the prototype location and tracking system. A three-dimensional (3D) proximity tracking prototype design using commercially available UWB products is proposed to implement the Time-Difference- Of-Arrival (TDOA) tracking methodology in this research effort. The TDOA tracking algorithm is utilized for location estimation in the prototype system, not only to exploit the precise time resolution possible with UWB signals, but also to eliminate the need for synchronization between the transmitter and the receiver. Simulations show that the TDOA algorithm can achieve the fine tracking resolution with low noise TDOA estimates for close-in tracking. Field tests demonstrated that this prototype UWB TDOA High Resolution 3D Proximity Tracking System is feasible for providing positioning-awareness information in a 3D space to a robotic control system. This 3D tracking system is developed for a robotic control system in a facility called "Moonyard" at Honeywell Defense & System in Arizona under a Space Act Agreement.
Display of real-time 3D sensor data in a DVE system
NASA Astrophysics Data System (ADS)
Völschow, Philipp; Münsterer, Thomas; Strobel, Michael; Kuhn, Michael
2016-05-01
This paper describes the implementation of displaying real-time processed LiDAR 3D data in a DVE pilot assistance system. The goal is to display to the pilot a comprehensive image of the surrounding world without misleading or cluttering information. 3D data which can be attributed, i.e. classified, to terrain or predefined obstacle classes is depicted differently from data belonging to elevated objects which could not be classified. Display techniques may be different for head-down and head-up displays to avoid cluttering of the outside view in the latter case. While terrain is shown as shaded surfaces with grid structures or as grid structures alone, respectively, classified obstacles are typically displayed with obstacle symbols only. Data from objects elevated above ground are displayed as shaded 3D points in space. In addition the displayed 3D points are accumulated over a certain time frame allowing on the one hand side a cohesive structure being displayed and on the other hand displaying moving objects correctly. In addition color coding or texturing can be applied based on known terrain features like land use.
Improving GOOGLE'S Cartographer 3d Mapping by Continuous-Time Slam
NASA Astrophysics Data System (ADS)
Nüchter, A.; Bleier, M.; Schauer, J.; Janotta, P.
2017-02-01
This paper shows how to use the result of Google's SLAM solution, called Cartographer, to bootstrap our continuous-time SLAM algorithm. The presented approach optimizes the consistency of the global point cloud, and thus improves on Google's results. We use the algorithms and data from Google as input for our continuous-time SLAM software. We also successfully applied our software to a similar backpack system which delivers consistent 3D point clouds even in absence of an IMU.
Advanced in Visualization of 3D Time-Dependent CFD Solutions
NASA Technical Reports Server (NTRS)
Lane, David A.; Lasinski, T. A. (Technical Monitor)
1995-01-01
Numerical simulations of complex 3D time-dependent (unsteady) flows are becoming increasingly feasible because of the progress in computing systems. Unfortunately, many existing flow visualization systems were developed for time-independent (steady) solutions and do not adequately depict solutions from unsteady flow simulations. Furthermore, most systems only handle one time step of the solutions individually and do not consider the time-dependent nature of the solutions. For example, instantaneous streamlines are computed by tracking the particles using one time step of the solution. However, for streaklines and timelines, particles need to be tracked through all time steps. Streaklines can reveal quite different information about the flow than those revealed by instantaneous streamlines. Comparisons of instantaneous streamlines with dynamic streaklines are shown. For a complex 3D flow simulation, it is common to generate a grid system with several millions of grid points and to have tens of thousands of time steps. The disk requirement for storing the flow data can easily be tens of gigabytes. Visualizing solutions of this magnitude is a challenging problem with today's computer hardware technology. Even interactive visualization of one time step of the flow data can be a problem for some existing flow visualization systems because of the size of the grid. Current approaches for visualizing complex 3D time-dependent CFD solutions are described. The flow visualization system developed at NASA Ames Research Center to compute time-dependent particle traces from unsteady CFD solutions is described. The system computes particle traces (streaklines) by integrating through the time steps. This system has been used by several NASA scientists to visualize their CFD time-dependent solutions. The flow visualization capabilities of this system are described, and visualization results are shown.
Real-time 3D video utilizing a compressed sensing time-of-flight single-pixel camera
NASA Astrophysics Data System (ADS)
Edgar, Matthew P.; Sun, Ming-Jie; Gibson, Graham M.; Spalding, Gabriel C.; Phillips, David B.; Padgett, Miles J.
2016-09-01
Time-of-flight 3D imaging is an important tool for applications such as remote sensing, machine vision and autonomous navigation. Conventional time-of-flight three-dimensional imaging systems that utilize a raster scanned laser to measure the range of each pixel in the scene sequentially, inherently have acquisition times that scale directly with the resolution. Here we show a modified time-of-flight 3D camera employing structured illumination, which uses a visible camera to enable a novel compressed sensing technique, minimising the acquisition time as well as providing a high-resolution reflectivity map for image overlay. Furthermore, a quantitative assessment of the 3D imaging performance is provided.
Audiovisual biofeedback improves image quality and reduces scan time for respiratory-gated 3D MRI
NASA Astrophysics Data System (ADS)
Lee, D.; Greer, P. B.; Arm, J.; Keall, P.; Kim, T.
2014-03-01
The purpose of this study was to test the hypothesis that audiovisual (AV) biofeedback can improve image quality and reduce scan time for respiratory-gated 3D thoracic MRI. For five healthy human subjects respiratory motion guidance in MR scans was provided using an AV biofeedback system, utilizing real-time respiratory motion signals. To investigate the improvement of respiratory-gated 3D MR images between free breathing (FB) and AV biofeedback (AV), each subject underwent two imaging sessions. Respiratory-related motion artifacts and imaging time were qualitatively evaluated in addition to the reproducibility of external (abdominal) motion. In the results, 3D MR images in AV biofeedback showed more anatomic information such as a clear distinction of diaphragm, lung lobes and sharper organ boundaries. The scan time was reduced from 401±215 s in FB to 334±94 s in AV (p-value 0.36). The root mean square variation of the displacement and period of the abdominal motion was reduced from 0.4±0.22 cm and 2.8±2.5 s in FB to 0.1±0.15 cm and 0.9±1.3 s in AV (p-value of displacement <0.01 and p-value of period 0.12). This study demonstrated that audiovisual biofeedback improves image quality and reduces scan time for respiratory-gated 3D MRI. These results suggest that AV biofeedback has the potential to be a useful motion management tool in medical imaging and radiation therapy procedures.
Exploring Drug Dosing Regimens In Vitro Using Real-Time 3D Spheroid Tumor Growth Assays.
Lal-Nag, Madhu; McGee, Lauren; Titus, Steven A; Brimacombe, Kyle; Michael, Sam; Sittampalam, Gurusingham; Ferrer, Marc
2017-03-01
Two-dimensional monolayer cell proliferation assays for cancer drug discovery have made the implementation of large-scale screens feasible but only seem to reflect a simplified view that oncogenes or tumor suppressor genes are the genetic drivers of cancer cell proliferation. However, there is now increased evidence that the cellular and physiological context in which these oncogenic events occur play a key role in how they drive tumor growth in vivo and, therefore, in how tumors respond to drug treatments. In vitro 3D spheroid tumor models are being developed to better mimic the physiology of tumors in vivo, in an attempt to improve the predictability and efficiency of drug discovery for the treatment of cancer. Here we describe the establishment of a real-time 3D spheroid growth, 384-well screening assay. The cells used in this study constitutively expressed green fluorescent protein (GFP), which enabled the real-time monitoring of spheroid formation and the effect of chemotherapeutic agents on spheroid size at different time points of sphere growth and drug treatment. This real-time 3D spheroid assay platform represents a first step toward the replication in vitro of drug dosing regimens being investigated in vivo. We hope that further development of this assay platform will allow the investigation of drug dosing regimens, efficacy, and resistance before preclinical and clinical studies.
Autonomous Real-Time Interventional Scan Plane Control With a 3-D Shape-Sensing Needle
Plata, Juan Camilo; Holbrook, Andrew B.; Park, Yong-Lae; Pauly, Kim Butts; Daniel, Bruce L.; Cutkosky, Mark R.
2016-01-01
This study demonstrates real-time scan plane control dependent on three-dimensional needle bending, as measured from magnetic resonance imaging (MRI)-compatible optical strain sensors. A biopsy needle with embedded fiber Bragg grating (FBG) sensors to measure surface strains is used to estimate its full 3-D shape and control the imaging plane of an MR scanner in real-time, based on the needle’s estimated profile. The needle and scanner coordinate frames are registered to each other via miniature radio-frequency (RF) tracking coils, and the scan planes autonomously track the needle as it is deflected, keeping its tip in view. A 3-D needle annotation is superimposed over MR-images presented in a 3-D environment with the scanner’s frame of reference. Scan planes calculated based on the FBG sensors successfully follow the tip of the needle. Experiments using the FBG sensors and RF coils to track the needle shape and location in real-time had an average root mean square error of 4.2 mm when comparing the estimated shape to the needle profile as seen in high resolution MR images. This positional variance is less than the image artifact caused by the needle in high resolution SPGR (spoiled gradient recalled) images. Optical fiber strain sensors can estimate a needle’s profile in real-time and be used for MRI scan plane control to potentially enable faster and more accurate physician response. PMID:24968093
Autonomous real-time interventional scan plane control with a 3-D shape-sensing needle.
Elayaperumal, Santhi; Plata, Juan Camilo; Holbrook, Andrew B; Park, Yong-Lae; Pauly, Kim Butts; Daniel, Bruce L; Cutkosky, Mark R
2014-11-01
This study demonstrates real-time scan plane control dependent on three-dimensional needle bending, as measured from magnetic resonance imaging (MRI)-compatible optical strain sensors. A biopsy needle with embedded fiber Bragg grating (FBG) sensors to measure surface strains is used to estimate its full 3-D shape and control the imaging plane of an MR scanner in real-time, based on the needle's estimated profile. The needle and scanner coordinate frames are registered to each other via miniature radio-frequency (RF) tracking coils, and the scan planes autonomously track the needle as it is deflected, keeping its tip in view. A 3-D needle annotation is superimposed over MR-images presented in a 3-D environment with the scanner's frame of reference. Scan planes calculated based on the FBG sensors successfully follow the tip of the needle. Experiments using the FBG sensors and RF coils to track the needle shape and location in real-time had an average root mean square error of 4.2 mm when comparing the estimated shape to the needle profile as seen in high resolution MR images. This positional variance is less than the image artifact caused by the needle in high resolution SPGR (spoiled gradient recalled) images. Optical fiber strain sensors can estimate a needle's profile in real-time and be used for MRI scan plane control to potentially enable faster and more accurate physician response.
3D real-time measurement system of seam with laser
NASA Astrophysics Data System (ADS)
Huang, Min-shuang; Huang, Jun-fen
2014-02-01
3-D Real-time Measurement System of seam outline based on Moiré Projection is proposed and designed. The system is composed of LD, grating, CCD, video A/D, FPGA, DSP and an output interface. The principle and hardware makeup of high-speed and real-time image processing circuit based on a Digital Signal Processor (DSP) and a Field Programmable Gate Array (FPGA) are introduced. Noise generation mechanism in poor welding field conditions is analyzed when Moiré stripes are projected on a welding workpiece surface. Median filter is adopted to smooth the acquired original laser image of seam, and then measurement results of a 3-D outline image of weld groove are provided.
Gust Acoustics Computation with a Space-Time CE/SE Parallel 3D Solver
NASA Technical Reports Server (NTRS)
Wang, X. Y.; Himansu, A.; Chang, S. C.; Jorgenson, P. C. E.; Reddy, D. R. (Technical Monitor)
2002-01-01
The benchmark Problem 2 in Category 3 of the Third Computational Aero-Acoustics (CAA) Workshop is solved using the space-time conservation element and solution element (CE/SE) method. This problem concerns the unsteady response of an isolated finite-span swept flat-plate airfoil bounded by two parallel walls to an incident gust. The acoustic field generated by the interaction of the gust with the flat-plate airfoil is computed by solving the 3D (three-dimensional) Euler equations in the time domain using a parallel version of a 3D CE/SE solver. The effect of the gust orientation on the far-field directivity is studied. Numerical solutions are presented and compared with analytical solutions, showing a reasonable agreement.
Real-time 3D radiation risk assessment supporting simulation of work in nuclear environments.
Szőke, I; Louka, M N; Bryntesen, T R; Bratteli, J; Edvardsen, S T; RøEitrheim, K K; Bodor, K
2014-06-01
This paper describes the latest developments at the Institute for Energy Technology (IFE) in Norway, in the field of real-time 3D (three-dimensional) radiation risk assessment for the support of work simulation in nuclear environments. 3D computer simulation can greatly facilitate efficient work planning, briefing, and training of workers. It can also support communication within and between work teams, and with advisors, regulators, the media and public, at all the stages of a nuclear installation's lifecycle. Furthermore, it is also a beneficial tool for reviewing current work practices in order to identify possible gaps in procedures, as well as to support the updating of international recommendations, dissemination of experience, and education of the current and future generation of workers.IFE has been involved in research and development into the application of 3D computer simulation and virtual reality (VR) technology to support work in radiological environments in the nuclear sector since the mid 1990s. During this process, two significant software tools have been developed, the VRdose system and the Halden Planner, and a number of publications have been produced to contribute to improving the safety culture in the nuclear industry.This paper describes the radiation risk assessment techniques applied in earlier versions of the VRdose system and the Halden Planner, for visualising radiation fields and calculating dose, and presents new developments towards implementing a flexible and up-to-date dosimetric package in these 3D software tools, based on new developments in the field of radiation protection. The latest versions of these 3D tools are capable of more accurate risk estimation, permit more flexibility via a range of user choices, and are applicable to a wider range of irradiation situations than their predecessors.
Modelling of 3-D electromagnetic responses using the time-wavenumber method
Lee, S.
1991-12-01
The diffusion of electromagnetic fields in time and the three spatial dimensions can be modelled using a new numerical algorithm that is tailored for geophysical applications. The novel feature of the algorithm is that a large part of the computation is done in the wavenumber domain. Here, the spatial Fourier transforms of the vertical magnetic field and the vertical current density are used to define two scalar potentials. For either a vertical electric or a vertical magnetic dipole source at the subsurface these wavenumber potentials can be represented by a simple Gaussian distribution function. In the air, the fields satisfy the Laplace equation. The flow of this algorithm is as follows: the potentials are defined in the wavenumber domain as an initial condition depending on the source configuration, the vector current density J in space is obtained from the potentials using the inverse Fourier transform, the vector electric field E is obtained by multiplying J by resistivity, the updated potentials are then obtained from the forward Fourier transform of E. Using the updated potential as a subsequent initial condition these steps are repeated until the solution reaches the final time. Since spatial derivatives can be exactly evaluated in the wavenumber domain by simple multiplications, this algorithm requires far less memory than the conventional finite difference (FD) method. The conventional FD method needs finer discretization in space in order to minimize the numerical dispersion caused by numerical differentiation in space. The conductivity distribution for this algorithm is piece-wise continuous and bounded in the wavenumber domain.
Demonstration of digital hologram recording and 3D-scenes reconstruction in real-time
NASA Astrophysics Data System (ADS)
Cheremkhin, Pavel A.; Evtikhiev, Nikolay N.; Krasnov, Vitaly V.; Kulakov, Mikhail N.; Kurbatova, Ekaterina A.; Molodtsov, Dmitriy Y.; Rodin, Vladislav G.
2016-04-01
Digital holography is technique that allows to reconstruct information about 2D-objects and 3D-scenes. This is achieved by registration of interference pattern formed by two beams: object and reference ones. Pattern registered by the digital camera is processed. This allows to obtain amplitude and phase of the object beam. Reconstruction of shape of the 2D objects and 3D-scenes can be obtained numerically (using computer) and optically (using spatial light modulators - SLMs). In this work camera Megaplus II ES11000 was used for digital holograms recording. The camera has 4008 × 2672 pixels with sizes of 9 μm × 9 μm. For hologram recording, 50 mW frequency-doubled Nd:YAG laser with wavelength 532 nm was used. Liquid crystal on silicon SLM HoloEye PLUTO VIS was used for optical reconstruction of digital holograms. SLM has 1920 × 1080 pixels with sizes of 8 μm × 8 μm. At objects reconstruction 10 mW He-Ne laser with wavelength 632.8 nm was used. Setups for digital holograms recording and their optical reconstruction with the SLM were combined as follows. MegaPlus Central Control Software allows to display registered frames by the camera with a little delay on the computer monitor. The SLM can work as additional monitor. In result displayed frames can be shown on the SLM display in near real-time. Thus recording and reconstruction of the 3D-scenes was obtained in real-time. Preliminary, resolution of displayed frames was chosen equaled to the SLM one. Quantity of the pixels was limited by the SLM resolution. Frame rate was limited by the camera one. This holographic video setup was applied without additional program implementations that would increase time delays between hologram recording and object reconstruction. The setup was demonstrated for reconstruction of 3D-scenes.
Laser 3-D measuring system and real-time visual feedback for teaching and correcting breathing.
Povšič, Klemen; Fležar, Matjaž; Možina, Janez; Jezeršek, Matija
2012-03-01
We present a novel method for real-time 3-D body-shape measurement during breathing based on the laser multiple-line triangulation principle. The laser projector illuminates the measured surface with a pattern of 33 equally inclined light planes. Simultaneously, the camera records the distorted light pattern from a different viewpoint. The acquired images are transferred to a personal computer, where the 3-D surface reconstruction, shape analysis, and display are performed in real time. The measured surface displacements are displayed with a color palette, which enables visual feedback to the patient while breathing is being taught. The measuring range is approximately 400×600×500 mm in width, height, and depth, respectively, and the accuracy of the calibrated apparatus is ±0.7 mm. The system was evaluated by means of its capability to distinguish between different breathing patterns. The accuracy of the measured volumes of chest-wall deformation during breathing was verified using standard methods of volume measurements. The results show that the presented 3-D measuring system with visual feedback has great potential as a diagnostic and training assistance tool when monitoring and evaluating the breathing pattern, because it offers a simple and effective method of graphical communication with the patient.
Holographic multi-focus 3D two-photon polymerization with real-time calculated holograms.
Vizsnyiczai, Gaszton; Kelemen, Lóránd; Ormos, Pál
2014-10-06
Two-photon polymerization enables the fabrication of micron sized structures with submicron resolution. Spatial light modulators (SLM) have already been used to create multiple polymerizing foci in the photoresist by holographic beam shaping, thus enabling the parallel fabrication of multiple microstructures. Here we demonstrate the parallel two-photon polymerization of single 3D microstructures by multiple holographically translated foci. Multiple foci were created by phase holograms, which were calculated real-time on an NVIDIA CUDA GPU, and displayed on an electronically addressed SLM. A 3D demonstrational structure was designed that is built up from a nested set of dodecahedron frames of decreasing size. Each individual microstructure was fabricated with the parallel and coordinated motion of 5 holographic foci. The reproducibility and the high uniformity of features of the microstructures were verified by scanning electron microscopy.
Recent Advances in 3D Time-Resolved Contrast-Enhanced MR Angiography
Riederer, Stephen J.; Haider, Clifton R.; Borisch, Eric A.; Weavers, Paul T.; Young, Phillip M.
2015-01-01
Contrast-enhanced MR angiography (CE-MRA) was first introduced for clinical studies approximately 20 years ago. Early work provided 3 to 4 mm spatial resolution with acquisition times in the 30 sec range. Since that time there has been continuing effort to provide improved spatial resolution with reduced acquisition time, allowing high resolution three-dimensional (3D) time-resolved studies. The purpose of this work is to describe how this has been accomplished. Specific technical enablers have been: improved gradients allowing reduced repetition times, improved k-space sampling and reconstruction methods, parallel acquisition particularly in two directions, and improved and higher count receiver coil arrays. These have collectively made high resolution time-resolved studies readily available for many anatomic regions. Depending on the application, approximate 1 mm isotropic resolution is now possible with frame times of several seconds. Clinical applications of time-resolved CE-MRA are briefly reviewed. PMID:26032598
Time-lapse 3D ground-penetrating radar during plot-scale infiltration experiments
NASA Astrophysics Data System (ADS)
Allroggen, Niklas; Jackisch, Conrad; Tronicke, Jens
2016-04-01
In electrical resistive soils, surface-based ground-penetrating radar (GPR) is known as the geophysical tool providing the highest spatial resolution. Thus, 2D and 3D GPR surveys are commonly used for imaging subsurface structures or estimating soil moisture content. Due to its sensitivity to soil moisture and its non-invasive character, GPR provides a large potential to monitor soil moisture variation at high temporal and spatial resolution. As shown in previous experiments, the acquisition of time-lapse GPR data under field conditions requires a high data quality in terms of repeatability as well as spatial and temporal resolution. We present hydrogeophysical field experiments at the plot scale (1m x 1m), during which we record time-lapse 3D GPR. For GPR data acquisition, we use a pulseEKKO PRO GPR system equipped with a pair of 500 MHz antennas in combination with a specially designed metal-free measuring platform. Additionally, we collect tracer and soil moisture data, which are used to improve the interpretation of the GPR data with special focus on preferential flow paths and their structured advective flow field. After an accurate time-lapse GPR data processing, we compare 3D reflection events before and after infiltration and quantitatively interpret their relative time-shift in terms of soil moisture variations. Thereby, we are able to account for basically all of the infiltrated water. The first experiments demonstrate the general applicability of our experimental approach but are limited by the number of acquired time steps and measurement during the sprinkling period (the time of the highest temporal dynamics) are not possible at all. Based on this experience we redesign our experimental setup to continuously collect GPR data during irrigation and infiltration. Thereby, we strongly increase the temporal resolution of our measurements, improve the interpretability of the GPR data, and monitor the temporal and spatial dynamics of shallow subsurface
Real time 3D structural and Doppler OCT imaging on graphics processing units
NASA Astrophysics Data System (ADS)
Sylwestrzak, Marcin; Szlag, Daniel; Szkulmowski, Maciej; Gorczyńska, Iwona; Bukowska, Danuta; Wojtkowski, Maciej; Targowski, Piotr
2013-03-01
In this report the application of graphics processing unit (GPU) programming for real-time 3D Fourier domain Optical Coherence Tomography (FdOCT) imaging with implementation of Doppler algorithms for visualization of the flows in capillary vessels is presented. Generally, the time of the data processing of the FdOCT data on the main processor of the computer (CPU) constitute a main limitation for real-time imaging. Employing additional algorithms, such as Doppler OCT analysis, makes this processing even more time consuming. Lately developed GPUs, which offers a very high computational power, give a solution to this problem. Taking advantages of them for massively parallel data processing, allow for real-time imaging in FdOCT. The presented software for structural and Doppler OCT allow for the whole processing with visualization of 2D data consisting of 2000 A-scans generated from 2048 pixels spectra with frame rate about 120 fps. The 3D imaging in the same mode of the volume data build of 220 × 100 A-scans is performed at a rate of about 8 frames per second. In this paper a software architecture, organization of the threads and optimization applied is shown. For illustration the screen shots recorded during real time imaging of the phantom (homogeneous water solution of Intralipid in glass capillary) and the human eye in-vivo is presented.
V-Man Generation for 3-D Real Time Animation. Chapter 5
NASA Technical Reports Server (NTRS)
Nebel, Jean-Christophe; Sibiryakov, Alexander; Ju, Xiangyang
2007-01-01
The V-Man project has developed an intuitive authoring and intelligent system to create, animate, control and interact in real-time with a new generation of 3D virtual characters: The V-Men. It combines several innovative algorithms coming from Virtual Reality, Physical Simulation, Computer Vision, Robotics and Artificial Intelligence. Given a high-level task like "walk to that spot" or "get that object", a V-Man generates the complete animation required to accomplish the task. V-Men synthesise motion at runtime according to their environment, their task and their physical parameters, drawing upon its unique set of skills manufactured during the character creation. The key to the system is the automated creation of realistic V-Men, not requiring the expertise of an animator. It is based on real human data captured by 3D static and dynamic body scanners, which is then processed to generate firstly animatable body meshes, secondly 3D garments and finally skinned body meshes.
A novel time dependent gamma evaluation function for dynamic 2D and 3D dose distributions.
Podesta, Mark; Persoon, Lucas C G G; Verhaegen, Frank
2014-10-21
Modern external beam radiotherapy requires detailed verification and quality assurance so that confidence can be placed on both the delivery of a single treatment fraction and on the consistency of delivery throughout the treatment course. To verify dose distributions, a comparison between prediction and measurement must be made. Comparisons between two dose distributions are commonly performed using a Gamma evaluation which is a calculation of two quantities on a pixel by pixel basis; the dose difference, and the distance to agreement. By providing acceptance criteria (e.g. 3%, 3 mm), the function will find the most appropriate match within its two degrees of freedom. For complex dynamic treatments such as IMRT or VMAT it is important to verify the dose delivery in a time dependent manner and so a gamma evaluation that includes a degree of freedom in the time domain via a third parameter, time to agreement, is presented here. A C++ (mex) based gamma function was created that could be run on either CPU and GPU computing platforms that would allow a degree of freedom in the time domain. Simple test cases were created in both 2D and 3D comprising of simple geometrical shapes with well-defined boundaries varying over time. Changes of varying magnitude in either space or time were introduced and repeated gamma analyses were performed varying the criteria. A clinical VMAT case was also included, artificial air bubbles of varying size were introduced to a patient geometry, along with shifts of varying magnitude in treatment time. For all test cases where errors in distance, dose or time were introduced, the time dependent gamma evaluation could accurately highlight the errors.The time dependent gamma function presented here allows time to be included as a degree of freedom in gamma evaluations. The function allows for 2D and 3D data sets which are varying over time to be compared using appropriate criteria without penalising minor offsets of subsequent radiation fields
TUNED FINITE-DIFFERENCE DIFFUSION OPERATORS
Maron, Jason; Low, Mordecai-Mark Mac E-mail: mordecai@amnh.org
2009-05-15
Finite-difference simulations of fluid dynamics and magnetohydrodynamics generally require an explicit diffusion operator, either to maintain stability by attenuating grid-scale structure, or to implement physical diffusivities such as viscosity or resistivity. If the goal is stability only, the diffusion must act at the grid scale, but should affect structure at larger scales as little as possible. For physical diffusivities the diffusion scale depends on the problem, and diffusion may act at larger scales as well. Diffusivity can undesirably limit the computational time step in both cases. We construct tuned finite-difference diffusion operators that minimally limit the time step while acting as desired near the diffusion scale. Such operators reach peak values at the diffusion scale rather than at the grid scale, but behave as standard operators at larger scales. These operators will be useful for simulations with high magnetic diffusivity or kinematic viscosity such as in the simulation of astrophysical dynamos with magnetic Prandtl number far from unity, or for numerical stabilization using hyperdiffusivity.
3D inversion of time-lapse CSEM data for reservoir monitoring
NASA Astrophysics Data System (ADS)
Black, N.; Wilson, G. A.; Zhdanov, M. S.
2010-12-01
Effective reservoir monitoring requires time-lapse reservoir information throughout the interwell volume. The ability to understand and control reservoir behavior over the course of production allows for optimization of reservoir performance and production strategies. Good monitoring information makes it possible to improve the timing and location of new drilling (for both production and injection wells), to recognize flow paths, and to map oil that has been bypassed. Recent studies have inferred the feasibility of time-lapse marine controlled-source electromagnetic (CSEM) methods for the monitoring of offshore oil and gas fields. However, quantitative interpretations to ascertain what reservoir information may be recovered have not been performed. The time-lapse CSEM inverse problem can be highly constrained since the geometry of the reservoir is established prior from high resolution seismic surveys, rock and fluid properties are measured from well logs, and multiple history matched production scenarios are contained in dynamic reservoir models. We present a 3D inversion study of synthetic time-lapse CSEM data modeled from dynamic reservoir simulations. We demonstrate that even with few constraints on the model, the hydrocarbon-water front can be recovered from 3D inversion.
NASA Astrophysics Data System (ADS)
Rosas-Carbajal, M.; Linde, N.; Peacock, J.; Zyserman, F. I.; Kalscheuer, T.; Thiel, S.
2015-12-01
Surface-based monitoring of mass transfer caused by injections and extractions in deep boreholes is crucial to maximize oil, gas and geothermal production. Inductive electromagnetic methods, such as magnetotellurics, are appealing for these applications due to their large penetration depths and sensitivity to changes in fluid conductivity and fracture connectivity. In this work, we propose a 3-D Markov chain Monte Carlo inversion of time-lapse magnetotelluric data to image mass transfer following a saline fluid injection. The inversion estimates the posterior probability density function of the resulting plume, and thereby quantifies model uncertainty. To decrease computation times, we base the parametrization on a reduced Legendre moment decomposition of the plume. A synthetic test shows that our methodology is effective when the electrical resistivity structure prior to the injection is well known. The centre of mass and spread of the plume are well retrieved. We then apply our inversion strategy to an injection experiment in an enhanced geothermal system at Paralana, South Australia, and compare it to a 3-D deterministic time-lapse inversion. The latter retrieves resistivity changes that are more shallow than the actual injection interval, whereas the probabilistic inversion retrieves plumes that are located at the correct depths and oriented in a preferential north-south direction. To explain the time-lapse data, the inversion requires unrealistically large resistivity changes with respect to the base model. We suggest that this is partly explained by unaccounted subsurface heterogeneities in the base model from which time-lapse changes are inferred.
Development of a Wireless and Near Real-Time 3D Ultrasound Strain Imaging System.
Chen, Zhaohong; Chen, Yongdong; Huang, Qinghua
2016-04-01
Ultrasound elastography is an important medical imaging tool for characterization of lesions. In this paper, we present a wireless and near real-time 3D ultrasound strain imaging system. It uses a 3D translating device to control a commercial linear ultrasound transducer to collect pre-compression and post-compression radio-frequency (RF) echo signal frames. The RF frames are wirelessly transferred to a high-performance server via a local area network (LAN). A dynamic programming strain estimation algorithm is implemented with the compute unified device architecture (CUDA) on the graphic processing unit (GPU) in the server to calculate the strain image after receiving a pre-compression RF frame and a post-compression RF frame at the same position. Each strain image is inserted into a strain volume which can be rendered in near real-time. We take full advantage of the translating device to precisely control the probe movement and compression. The GPU-based parallel computing techniques are designed to reduce the computation time. Phantom and in vivo experimental results demonstrate that our system can generate strain volumes with good quality and display an incrementally reconstructed volume image in near real-time.
Time-lapse 3D electrical resistivity tomography to monitor soil-plant interactions
NASA Astrophysics Data System (ADS)
Boaga, Jacopo; Rossi, Matteo; Cassiani, Giorgio; Putti, Mario
2013-04-01
In this work we present the application of time-lapse non-invasive 3D micro- electrical tomography (ERT) to monitor soil-plant interactions in the root zone in the framework of the FP7 Project CLIMB (Climate Induced Changes on the Hydrology of Mediterranean Basins). The goal of the study is to gain a better understanding of the soil-vegetation interactions by the use of non-invasive techniques. We designed, built and installed a 3D electrical tomography apparatus for the monitoring of the root zone of a single apple tree in an orchard located in the Trentino region, Northern Italy. The micro-ERT apparatus consists of 48 buried electrodes on 4 instrumented micro boreholes plus 24 mini-electrodes on the surface spaced 0.1 m on a square grid. We collected repeated ERT and TDR soil moisture measurements for one year and performed two different controlled irrigation tests: one during a very dry Summer and one during a very wet and highly dynamic plant growing Spring period. We also ran laboratory analyses on soil specimens, in order to evaluate the electrical response at different saturation steps. The results demonstrate that 3D micro-ERT is capable of characterizing subsoil conditions and monitoring root zone activities, especially in terms of root zone suction regions. In particular, we note that in very dry conditions, 3D micro ERT can image water plumes in the shallow subsoil produced by a drip irrigation system. In the very dynamic growing season, under abundant irrigation, micro 3D ERT can detect the main suction zones caused by the tree root activity. Even though the quantitative use of this technique for moisture content balance suffers from well-known inversion difficulties, even the pure imaging of the active root zone is a valuable contribution. However the integration of the measurements in a fully coupled hydrogeophysical inversion is the way forward for a better understanding of subsoil interactions between biomass, hydrosphere and atmosphere.
Time Lapse of World’s Largest 3-D Printed Object
2016-08-29
Researchers at the MDF have 3D-printed a large-scale trim tool for a Boeing 777X, the world’s largest twin-engine jet airliner. The additively manufactured tool was printed on the Big Area Additive Manufacturing, or BAAM machine over a 30-hour period. The team used a thermoplastic pellet comprised of 80% ABS plastic and 20% carbon fiber from local material supplier. The tool has proven to decrease time, labor, cost and errors associated with traditional manufacturing techniques and increased energy savings in preliminary testing and will undergo further, long term testing.
Infrared Time Lapse of World’s Largest 3D-Printed Object
2016-08-29
Researchers at Oak Ridge National Laboratory have 3D-printed a large-scale trim tool for a Boeing 777X, the world’s largest twin-engine jet airliner. The additively manufactured tool was printed on the Big Area Additive Manufacturing, or BAAM machine over a 30-hour period. The team used a thermoplastic pellet comprised of 80% ABS plastic and 20% carbon fiber from local material supplier. The tool has proven to decrease time, labor, cost and errors associated with traditional manufacturing techniques and increased energy savings in preliminary testing and will undergo further, long term testing.
3D non-LTE time-dependent spectrum synthesis for type Ia supernovae
NASA Astrophysics Data System (ADS)
Kromer, M.; Sim, S. A.; Hillebrandt, W.
2009-09-01
Despite the importance of Type Ia supernovae as standard candles for cosmology and to the chemical evolution of the Universe, it is still not completely understood how these explosions take place and which are the progenitor systems. In this contribution we present a Monte Carlo code for modelling the time-dependent 3D radiative transfer problem in chemically inhomogeneous models of supernova ejecta. We avoid free parameters so that a direct comparison between synthetic spectra and light curves calculated from hydrodynamic explosion models and observations becomes feasible. Calculations for the well known W7 explosion model and first applications to multidimensional toy models are shown.
A Novel 2D-to-3D Video Conversion Method Using Time-Coherent Depth Maps
Yin, Shouyi; Dong, Hao; Jiang, Guangli; Liu, Leibo; Wei, Shaojun
2015-01-01
In this paper, we propose a novel 2D-to-3D video conversion method for 3D entertainment applications. 3D entertainment is getting more and more popular and can be found in many contexts, such as TV and home gaming equipment. 3D image sensors are a new method to produce stereoscopic video content conveniently and at a low cost, and can thus meet the urgent demand for 3D videos in the 3D entertaiment market. Generally, 2D image sensor and 2D-to-3D conversion chip can compose a 3D image sensor. Our study presents a novel 2D-to-3D video conversion algorithm which can be adopted in a 3D image sensor. In our algorithm, a depth map is generated by combining global depth gradient and local depth refinement for each frame of 2D video input. Global depth gradient is computed according to image type while local depth refinement is related to color information. As input 2D video content consists of a number of video shots, the proposed algorithm reuses the global depth gradient of frames within the same video shot to generate time-coherent depth maps. The experimental results prove that this novel method can adapt to different image types, reduce computational complexity and improve the temporal smoothness of generated 3D video. PMID:26131674
Integrated Modeling of Time Evolving 3D Kinetic MHD Equilibria and NTV Torque
NASA Astrophysics Data System (ADS)
Logan, N. C.; Park, J.-K.; Grierson, B. A.; Haskey, S. R.; Nazikian, R.; Cui, L.; Smith, S. P.; Meneghini, O.
2016-10-01
New analysis tools and integrated modeling of plasma dynamics developed in the OMFIT framework are used to study kinetic MHD equilibria evolution on the transport time scale. The experimentally observed profile dynamics following the application of 3D error fields are described using a new OMFITprofiles workflow that directly addresses the need for rapid and comprehensive analysis of dynamic equilibria for next-step theory validation. The workflow treats all diagnostic data as fundamentally time dependent, provides physics-based manipulations such as ELM phase data selection, and is consistent across multiple machines - including DIII-D and NSTX-U. The seamless integration of tokamak data and simulation is demonstrated by using the self-consistent kinetic EFIT equilibria and profiles as input into 2D particle, momentum and energy transport calculations using TRANSP as well as 3D kinetic MHD equilibrium stability and neoclassical transport modeling using General Perturbed Equilibrium Code (GPEC). The result is a smooth kinetic stability and NTV torque evolution over transport time scales. Work supported by DE-AC02-09CH11466.
A new time-to-digital converter for the 3D imaging Lidar
NASA Astrophysics Data System (ADS)
Hu, Chunsheng; Huang, Zongsheng; Qin, Shiqiao; Hu, Feng
2012-10-01
In order to reduce the negative influence caused by the temperature and voltage variations of the FPGA (Field Programmable Gate Array), we propose a new FPGA-based time-to-digital converter. The proposed converter adopts a high-stability TCXO (Temperature Compensated Crystal Oscillator), a FPGA and a new algorithm, which can significantly decrease the negative influence due to the FPGA temperature and voltage variations. This paper introduces the principle of measurement, main framework, delayer chain structure and delay variation compensation method of the proposed converter, and analyzes its measurement precision and the maximum measurement frequency. The proposed converter is successfully implemented with a Cyclone I FPGA chip and a TCXO. And the implementation method is discussed in detail. The measurement precision of the converter is also validated by experiments. The results show that the mean measurement error is less than 260 ps, the standard deviation is less than 300 ps, and the maximum measurement frequency is above 10 million times per second. The precision and frequency of measurement for the proposed converter are adequate for the 3D imaging lidar (light detection and ranging). As well as the 3D imaging lidar, the converter can be applied to the pulsed laser range finder and other time interval measuring areas.
Real time 3D visualization of ultrasonic data using a standard PC.
Nikolov, Svetoslav Ivanov; Pablo Gómez Gonzaléz, Juan; Arendt Jensen, Jørgen
2003-08-01
This paper describes a flexible, software-based scan converter capable of rendering 3D volumetric data in real time on a standard PC. The display system is used in the remotely accessible and software-configurable multichannel ultrasound sampling system (RASMUS system) developed at the Center for Fast Ultrasound Imaging. The display system is split into two modules: data transfer and display. These two modules are independent and communicate using shared memory and a predefined set of functions. It is, thus, possible to use the display program with a different data-transfer module which is tailored to another source of data (scanner, database, etc.). The data-transfer module of the RASMUS system is based on a digital signal processor from Analog Devices--ADSP 21060. The beamformer is connected to a PC via the link channels of the ADSP. A direct memory access channel transfers the data from the ADSP to a memory buffer. The display module, which is based on OpenGL, uses this memory buffer as a texture map that is passed to the graphics board. The scan conversion, image interpolation, and logarithmic compression are performed by the graphics board, thus reducing the load on the main processor to a minimum. The scan conversion is done by mapping the ultrasonic data to polygons. The format of the image is determined only by the coordinates of the polygons allowing for any kind of geometry to be displayed on the screen. Data from color flow mapping is added by alpha-blending. The 3D data are displayed either as cross-sectional planes, or as a fully rendered 3D volume displayed as a pyramid. All sides of the pyramid can be changed to reveal B-mode or C-mode scans, and the pyramid can be rotated in all directions in real time.
Design and Performance Evaluation on Ultra-Wideband Time-Of-Arrival 3D Tracking System
NASA Technical Reports Server (NTRS)
Ni, Jianjun; Arndt, Dickey; Ngo, Phong; Dusl, John
2012-01-01
A three-dimensional (3D) Ultra-Wideband (UWB) Time--of-Arrival (TOA) tracking system has been studied at NASA Johnson Space Center (JSC) to provide the tracking capability inside the International Space Station (ISS) modules for various applications. One of applications is to locate and report the location where crew experienced possible high level of carbon-dioxide and felt upset. In order to accurately locate those places in a multipath intensive environment like ISS modules, it requires a robust real-time location system (RTLS) which can provide the required accuracy and update rate. A 3D UWB TOA tracking system with two-way ranging has been proposed and studied. The designed system will be tested in the Wireless Habitat Testbed which simulates the ISS module environment. In this presentation, we discuss the 3D TOA tracking algorithm and the performance evaluation based on different tracking baseline configurations. The simulation results show that two configurations of the tracking baseline are feasible. With 100 picoseconds standard deviation (STD) of TOA estimates, the average tracking error 0.2392 feet (about 7 centimeters) can be achieved for configuration Twisted Rectangle while the average tracking error 0.9183 feet (about 28 centimeters) can be achieved for configuration Slightly-Twisted Top Rectangle . The tracking accuracy can be further improved with the improvement of the STD of TOA estimates. With 10 picoseconds STD of TOA estimates, the average tracking error 0.0239 feet (less than 1 centimeter) can be achieved for configuration "Twisted Rectangle".
MOEMS-based time-of-flight camera for 3D video capturing
NASA Astrophysics Data System (ADS)
You, Jang-Woo; Park, Yong-Hwa; Cho, Yong-Chul; Park, Chang-Young; Yoon, Heesun; Lee, Sang-Hun; Lee, Seung-Wan
2013-03-01
We suggest a Time-of-Flight (TOF) video camera capturing real-time depth images (a.k.a depth map), which are generated from the fast-modulated IR images utilizing a novel MOEMS modulator having switching speed of 20 MHz. In general, 3 or 4 independent IR (e.g. 850nm) images are required to generate a single frame of depth image. Captured video image of a moving object frequently shows motion drag between sequentially captured IR images, which results in so called `motion blur' problem even when the frame rate of depth image is fast (e.g. 30 to 60 Hz). We propose a novel `single shot' TOF 3D camera architecture generating a single depth image out of synchronized captured IR images. The imaging system constitutes of 2x2 imaging lens array, MOEMS optical shutters (modulator) placed on each lens aperture and a standard CMOS image sensor. The IR light reflected from object is modulated by optical shutters on the apertures of 2x2 lens array and then transmitted images are captured on the image sensor resulting in 2x2 sub-IR images. As a result, the depth image is generated with those simultaneously captured 4 independent sub-IR images, hence the motion blur problem is canceled. The resulting performance is very useful in the applications of 3D camera to a human-machine interaction device such as user interface of TV, monitor, or hand held devices and motion capturing of human body. In addition, we show that the presented 3D camera can be modified to capture color together with depth image simultaneously on `single shot' frame rate.
Single DMD time-multiplexed 64-views autostereoscopic 3D display
NASA Astrophysics Data System (ADS)
Loreti, Luigi
2013-03-01
Based on previous prototype of the Real time 3D holographic display developed last year, we developed a new concept of auto-stereoscopic multiview display (64 views), wide angle (90°) 3D full color display. The display is based on a RGB laser light source illuminating a DMD (Discovery 4100 0,7") at 24.000 fps, an image deflection system made with an AOD (Acoustic Optic Deflector) driven by a piezo-electric transducer generating a variable standing acoustic wave on the crystal that acts as a phase grating. The DMD projects in fast sequence 64 point of view of the image on the crystal cube. Depending on the frequency of the standing wave, the input picture sent by the DMD is deflected in different angle of view. An holographic screen at a proper distance diffuse the rays in vertical direction (60°) and horizontally select (1°) only the rays directed to the observer. A telescope optical system will enlarge the image to the right dimension. A VHDL firmware to render in real-time (16 ms) 64 views (16 bit 4:2:2) of a CAD model (obj, dxf or 3Ds) and depth-map encoded video images was developed into the resident Virtex5 FPGA of the Discovery 4100 SDK, thus eliminating the needs of image transfer and high speed links
Twin-beam real-time position estimation of micro-objects in 3D
NASA Astrophysics Data System (ADS)
Gurtner, Martin; Zemánek, Jiří
2016-12-01
Various optical methods for measuring positions of micro-objects in 3D have been reported in the literature. Nevertheless, the majority of them are not suitable for real-time operation, which is needed, for example, for feedback position control. In this paper, we present a method for real-time estimation of the position of micro-objects in 3D1; the method is based on twin-beam illumination and requires only a very simple hardware setup whose essential part is a standard image sensor without any lens. The performance of the proposed method is tested during a micro-manipulation task in which the estimated position served as feedback for the controller. The experiments show that the estimate is accurate to within ∼3 μm in the lateral position and ∼7 μm in the axial distance with the refresh rate of 10 Hz. Although the experiments are done using spherical objects, the presented method could be modified to handle non-spherical objects as well.
In vivo real-time 3-D intracardiac echo using PMUT arrays.
Dausch, David E; Gilchrist, Kristin H; Carlson, James B; Hall, Stephen D; Castellucci, John B; von Ramm, Olaf T
2014-10-01
Piezoelectric micromachined ultrasound transducer (PMUT) matrix arrays were fabricated containing novel through-silicon interconnects and integrated into intracardiac catheters for in vivo real-time 3-D imaging. PMUT arrays with rectangular apertures containing 256 and 512 active elements were fabricated and operated at 5 MHz. The arrays were bulk micromachined in silicon-on-insulator substrates, and contained flexural unimorph membranes comprising the device silicon, lead zirconate titanate (PZT), and electrode layers. Through-silicon interconnects were fabricated by depositing a thin-film conformal copper layer in the bulk micromachined via under each PMUT membrane and photolithographically patterning this copper layer on the back of the substrate to facilitate contact with the individually addressable matrix array elements. Cable assemblies containing insulated 45-AWG copper wires and a termination silicon substrate were thermocompression bonded to the PMUT substrate for signal wire interconnection to the PMUT array. Side-viewing 14-Fr catheters were fabricated and introduced through the femoral vein in an adult porcine model. Real-time 3-D images were acquired from the right atrium using a prototype ultrasound scanner. Full 60° × 60° volume sectors were obtained with penetration depth of 8 to 10 cm at frame rates of 26 to 31 volumes per second.
Ring array transducers for real-time 3-D imaging of an atrial septal occluder.
Light, Edward D; Lindsey, Brooks D; Upchurch, Joseph A; Smith, Stephen W
2012-08-01
We developed new miniature ring array transducers integrated into interventional device catheters such as used to deploy atrial septal occluders. Each ring array consisted of 55 elements operating near 5 MHz with interelement spacing of 0.20 mm. It was constructed on a flat piece of copper-clad polyimide and then wrapped around an 11 French O.D. catheter. We used a braided cabling technology from Tyco Electronics Corporation to connect the elements to the Volumetric Medical Imaging (VMI) real-time 3-D ultrasound scanner. Transducer performance yielded a -6 dB fractional bandwidth of 20% centered at 4.7 MHz without a matching layer vs. average bandwidth of 60% centered at 4.4 MHz with a matching layer. Real-time 3-D rendered images of an en face view of a Gore Helex septal occluder in a water tank showed a finer texture of the device surface from the ring array with the matching layer.
Real-time physics-based 3D biped character animation using an inverted pendulum model.
Tsai, Yao-Yang; Lin, Wen-Chieh; Cheng, Kuangyou B; Lee, Jehee; Lee, Tong-Yee
2010-01-01
We present a physics-based approach to generate 3D biped character animation that can react to dynamical environments in real time. Our approach utilizes an inverted pendulum model to online adjust the desired motion trajectory from the input motion capture data. This online adjustment produces a physically plausible motion trajectory adapted to dynamic environments, which is then used as the desired motion for the motion controllers to track in dynamics simulation. Rather than using Proportional-Derivative controllers whose parameters usually cannot be easily set, our motion tracking adopts a velocity-driven method which computes joint torques based on the desired joint angular velocities. Physically correct full-body motion of the 3D character is computed in dynamics simulation using the computed torques and dynamical model of the character. Our experiments demonstrate that tracking motion capture data with real-time response animation can be achieved easily. In addition, physically plausible motion style editing, automatic motion transition, and motion adaptation to different limb sizes can also be generated without difficulty.
Wang, Junchen; Suenaga, Hideyuki; Liao, Hongen; Hoshi, Kazuto; Yang, Liangjing; Kobayashi, Etsuko; Sakuma, Ichiro
2015-03-01
Autostereoscopic 3D image overlay for augmented reality (AR) based surgical navigation has been studied and reported many times. For the purpose of surgical overlay, the 3D image is expected to have the same geometric shape as the original organ, and can be transformed to a specified location for image overlay. However, how to generate a 3D image with high geometric fidelity and quantitative evaluation of 3D image's geometric accuracy have not been addressed. This paper proposes a graphics processing unit (GPU) based computer-generated integral imaging pipeline for real-time autostereoscopic 3D display, and an automatic closed-loop 3D image calibration paradigm for displaying undistorted 3D images. Based on the proposed methods, a novel AR device for 3D image surgical overlay is presented, which mainly consists of a 3D display, an AR window, a stereo camera for 3D measurement, and a workstation for information processing. The evaluation on the 3D image rendering performance with 2560×1600 elemental image resolution shows the rendering speeds of 50-60 frames per second (fps) for surface models, and 5-8 fps for large medical volumes. The evaluation of the undistorted 3D image after the calibration yields sub-millimeter geometric accuracy. A phantom experiment simulating oral and maxillofacial surgery was also performed to evaluate the proposed AR overlay device in terms of the image registration accuracy, 3D image overlay accuracy, and the visual effects of the overlay. The experimental results show satisfactory image registration and image overlay accuracy, and confirm the system usability.
Analysis of the repeatability of time-lapse 3d vsp multicomponent surveys, delhi field
NASA Astrophysics Data System (ADS)
Carvalho, Mariana Fernandes de
Delhi Field is a producing oil field located in northeastern Louisiana. In order to monitor the CO2 sweep efficiency, time-lapse 3D seismic data have been acquired in this area. Time-lapse studies are increasingly used to evaluate changes in the seismic response induced by the production of hydrocarbons or the injection of water, CO2 or steam into a reservoir. A 4D seismic signal is generated by a combination of production and injection effects within the reservoir as well as non-repeatability effects. In order to get reliable results from time-lapse seismic methods, it is important to distinguish the production and injection effects from the non-repeatability effects in the 4D seismic signal. Repeatability of 4D land seismic data is affected by several factors. The most significant of them are: source and receiver geometry inaccuracies, differences in seismic sources signatures, variations in the immediate near surface and ambient non-repeatable noise. In this project, two 3D multicomponent VSP surveys acquired in Delhi Field were used to quantify the relative contribution of each factor that can affect the repeatability in land seismic data. The factors analyzed in this study were: source and receiver geometry inaccura- cies, variations in the immediate near surface and ambient non-repeatable noise. This study showed that all these factors had a significant impact on the repeatability of the successive multicomponent VSP surveys in Delhi Field. This project also shows the advantages and disadvantages in the use of different repeata- bility metrics, normalized-root-mean-square (NRMS) difference and signal-to-distortion ratio (SDR) attribute, to evaluate the level of seismic repeatability between successive time-lapse seismic surveys. It is observed that NRMS difference is greatly influenced by time-shifts and that SDR attribute combined with the time-shift may give more distinct and representative repeatability information than the NRMS difference.
Testing & Validating: 3D Seismic Travel Time Tomography (Detailed Shallow Subsurface Imaging)
NASA Astrophysics Data System (ADS)
Marti, David; Marzan, Ignacio; Alvarez-Marron, Joaquina; Carbonell, Ramon
2016-04-01
A detailed full 3 dimensional P wave seismic velocity model was constrained by a high-resolution seismic tomography experiment. A regular and dense grid of shots and receivers was use to image a 500x500x200 m volume of the shallow subsurface. 10 GEODE's resulting in a 240 channels recording system and a 250 kg weight drop were used for the acquisition. The recording geometry consisted in 10x20m geophone grid spacing, and a 20x20 m stagered source spacing. A total of 1200 receivers and 676 source points. The study area is located within the Iberian Meseta, in Villar de Cañas (Cuenca, Spain). The lithological/geological target consisted in a Neogen sedimentary sequence formed from bottom to top by a transition from gyspum to silstones. The main objectives consisted in resolving the underground structure: contacts/discontinuities; constrain the 3D geometry of the lithology (possible cavities, faults/fractures). These targets were achieved by mapping the 3D distribution of the physical properties (P-wave velocity). The regularly space dense acquisition grid forced to acquire the survey in different stages and with a variety of weather conditions. Therefore, a careful quality control was required. More than a half million first arrivals were inverted to provide a 3D Vp velocity model that reached depths of 120 m in the areas with the highest ray coverage. An extended borehole campaign, that included borehole geophysical measurements in some wells provided unique tight constraints on the lithology an a validation scheme for the tomographic results. The final image reveals a laterally variable structure consisting of four different lithological units. In this methodological validation test travel-time tomography features a high capacity of imaging in detail the lithological contrasts for complex structures located at very shallow depths.
3D time dependent thermo-fluid dynamic model of ground deformation at Campi Flegrei caldera
NASA Astrophysics Data System (ADS)
Castaldo, R.; Tizzani, P.; Manconi, A.; Manzo, M.; Pepe, S.; Pepe, A.; Lanari, R.
2012-04-01
In active volcanic areas deformation signals are generally characterized by non-linear spatial and temporal variations [Tizzani P. et al., 2007]. This behaviour has been revealed in the last two decades by the so-called advanced DInSAR processing algorithms, developed to analyze surface deformation phenomena [Berardino P. et al., 2002; Ferretti C. et al., 2001]. Notwithstanding, most of the inverse modelling attempts to characterize the evolution of the volcanic sources are based on the assumption that the Earth's crust behaves as a homogeneous linear elastic material. However, the behaviour of the upper lithosphere in thermally anomalous regions (as active volcanoes are) might be well described as a non-Newtonian fluid, where some of the material proprieties of the rocks (i.e., apparent viscosities) can change over time [Pinkerton H. et al., 1995]. In this context, we considered the thermal proprieties and mechanical heterogeneities of the upper crust in order to develop a new 3D time dependent thermo-fluid dynamic model of Campi Flegrei (CF) caldera, Southern Italy. More specifically, according to Tizzani P. et al. (2010), we integrated in a FEM environment geophysical information (gravimetric, seismic, and borehole data) available for the considered area and performed two FEM optimization procedures to constrain the 3D distribution of unknown physical parameters (temperature and viscosity distributions) that might help explaining the data observed at surface (geothermal wells and DInSAR measurements). First, we searched for the heat production, the volume source distribution and surface emissivity parameters providing the best-fit of the geothermal profiles data measured at six boreholes [Agip ESGE, 1986], by solving the Fourier heat equation over time (about 40 kys). The 3D thermal field resulting from this optimization was used to calculate the 3D brittle-ductile transition. This analysis revealed the presence of a ductile region, located beneath the centre of
Rosas-Carbajal, Marina; Linde, Nicolas; Peacock, Jared R.; Zyserman, F. I.; Kalscheuer, Thomas; Thiel, Stephan
2015-01-01
Surface-based monitoring of mass transfer caused by injections and extractions in deep boreholes is crucial to maximize oil, gas and geothermal production. Inductive electromagnetic methods, such as magnetotellurics, are appealing for these applications due to their large penetration depths and sensitivity to changes in fluid conductivity and fracture connectivity. In this work, we propose a 3-D Markov chain Monte Carlo inversion of time-lapse magnetotelluric data to image mass transfer following a saline fluid injection. The inversion estimates the posterior probability density function of the resulting plume, and thereby quantifies model uncertainty. To decrease computation times, we base the parametrization on a reduced Legendre moment decomposition of the plume. A synthetic test shows that our methodology is effective when the electrical resistivity structure prior to the injection is well known. The centre of mass and spread of the plume are well retrieved.We then apply our inversion strategy to an injection experiment in an enhanced geothermal system at Paralana, South Australia, and compare it to a 3-D deterministic time-lapse inversion. The latter retrieves resistivity changes that are more shallow than the actual injection interval, whereas the probabilistic inversion retrieves plumes that are located at the correct depths and oriented in a preferential north-south direction. To explain the time-lapse data, the inversion requires unrealistically large resistivity changes with respect to the base model. We suggest that this is partly explained by unaccounted subsurface heterogeneities in the base model from which time-lapse changes are inferred.
Hybrid finite element-finite difference method for thermal analysis of blood vessels.
Blanchard, C H; Gutierrez, G; White, J A; Roemer, R B
2000-01-01
A hybrid finite-difference/finite-element technique for the thermal analysis of blood vessels embedded in perfused tissue has been developed and evaluated. This method provides efficient and accurate solutions to the conjugated heat transfer problem of convection by blood coupled to conduction in the tissue. The technique uses a previously developed 3D automatic meshing method for creating a finite element mesh in the tissue surrounding the vessels, coupled iteratively with a 1-D marching finite difference method for the interior of the vessels. This hybrid technique retains the flexibility and ease of automated finite-element meshing techniques for modelling the complex geometry of blood vessels and irregularly shaped tissues, and speeds the solution time by using a simple finite-difference method to calculate the bulk mean temperatures within all blood vessels. The use of the 1D finite-difference technique in the blood vessels also eliminates the large computer memory requirements needed to accurately solve large vessel network problems when fine FE meshes are used in the interior of vessels. The accuracy of the hybrid technique has been verified against previously verified numerical solutions. In summary, the hybrid technique combines the accuracy and flexibility found in automated finite-element techniques, with the speed and reduction of computational memory requirements associated with the 1D finite-difference technique, something which has not been done before. This method, thus, has the potential to provide accurate, flexible and relatively fast solutions for the thermal analysis of coupled perfusion/blood vessel problems, and large vessel network problems.
Crack identification by 3D time-domain elastic or acoustic topological sensitivity
NASA Astrophysics Data System (ADS)
Bellis, Cédric; Bonnet, Marc
2009-03-01
The topological sensitivity analysis, based on the asymptotic behavior of a cost functional associated with the creation of a small trial flaw in a defect-free solid, provides a computationally-fast, non-iterative approach for identifying flaws embedded in solids. This concept is here considered for crack identification using time-dependent measurements on the external boundary. The topological derivative of a cost function under the nucleation of a crack of infinitesimal size is established, in the framework of time-domain elasticity or acoustics. The simplicity and efficiency of the proposed formulation is enhanced by the recourse to an adjoint solution. Numerical results obtained on a 3-D elastodynamic example using the conventional FEM demonstrate the usefulness of the topological derivative as a crack indicator function. To cite this article: C. Bellis, M. Bonnet, C. R. Mecanique 337 (2009).
Integrated Interventional Devices For Real Time 3D Ultrasound Imaging and Therapy
NASA Astrophysics Data System (ADS)
Smith, Stephen W.; Lee, Warren; Gentry, Kenneth L.; Pua, Eric C.; Light, Edward D.
2006-05-01
Two recent advances have expanded the potential of medical ultrasound: the introduction of real-time 3-D ultrasound imaging with catheter, transesophageal and laparoscopic probes and the development of interventional ultrasound therapeutic systems for focused ultrasound surgery, ablation and ultrasound enhanced drug delivery. This work describes devices combining both technologies. A series of transducer probes have been designed, fabricated and tested including: 1) a 12 French side scanning catheter incorporating a 64 element matrix array for imaging at 5MHz and a piston ablation transducer operating at 10 MHz. 2) a 14 Fr forward-scanning catheter integrating a 112 element 2-D array for imaging at 5 MHz encircled by an ablation annulus operating at 10 MHz. Finite element modeling was then used to simulate catheter annular and linear phased array transducers for ablation. 3) Linear phased array transducers were built to confirm the finite element analysis at 4 and 8 MHz including a mechanically focused 86 element 9 MHz array which transmits an ISPTA of 29.3 W/cm2 and creates a lesion in 2 minutes. 4) 2-D arrays of 504 channels operating at 5 MHz have been developed for transesophageal and laparascopic 3D imaging as well as therapeutic heating. All the devices image the heart anatomy including atria, valves, septa and en face views of the pulmonary veins.
In-home hierarchical posture classification with a time-of-flight 3D sensor.
Diraco, Giovanni; Leone, Alessandro; Siciliano, Pietro
2014-01-01
A non-invasive technique for posture classification suitable to be used in several in-home scenarios is proposed and preliminary validation results are presented. 3D point cloud sequences were acquired using a single time-of-flight sensor working in a privacy preserving modality and they were processed with a low power embedded PC. In order to satisfy different application requirements (e.g. covered distance range, processing speed and discrimination capabilities), a twofold discrimination approach was investigated in which features were hierarchically arranged from coarse to fine by exploiting both topological and volumetric representations. The topological representation encoded the intrinsic topology of the body's shape using a skeleton-based structure, thus guaranteeing invariance to scale, rotations and postural changes and achieving a high level of detail with a moderate computational cost. On the other hand, using the volumetric representation features were described in terms of 3D cylindrical histograms working within a wider range of distances in a faster way and also guaranteeing good invariance properties. The discrimination capabilities were evaluated in four different real-home scenarios related with the fields of ambient assisted living and homecare, namely "dangerous event detection", "anomalous behaviour detection", "activities recognition" and "natural human-ambient interaction". For each mentioned scenario, the discrimination capabilities were evaluated in terms of invariance to viewpoint changes, representation capabilities and classification performance, achieving promising results. The two feature representation approaches exhibited complementary characteristics showing high reliability with classification rates greater than 97%.
SU-E-J-237: Real-Time 3D Anatomy Estimation From Undersampled MR Acquisitions
Glitzner, M; Lagendijk, J; Raaymakers, B; Crijns, S; Senneville, B Denis de
2015-06-15
Recent developments made MRI guided radiotherapy feasible. Performing simultaneous imaging during fractions can provide information about changing anatomy by means of deformable image registration for either immediate plan adaptations or accurate dose accumulation on the changing anatomy. In 3D MRI, however, acquisition time is considerable and scales with resolution. Furthermore, intra-scan motion degrades image quality.In this work, we investigate the sensitivity of registration quality on imageresolution: potentially, by employing spatial undersampling, the acquisition timeof MR images for the purpose of deformable image registration can be reducedsignificantly.On a volunteer, 3D-MR imaging data was sampled in a navigator-gated manner, acquiring one axial volume (360×260×100mm{sup 3}) per 3s during exhale phase. A T1-weighted FFE sequence was used with an acquired voxel size of (2.5mm{sup 3}) for a duration of 17min. Deformation vector fields were evaluated for 100 imaging cycles with respect to the initial anatomy using deformable image registration based on optical flow. Subsequently, the imaging data was downsampled by a factor of 2, simulating a fourfold acquisition speed. Displacements of the downsampled volumes were then calculated by the same process.In kidneyliver boundaries and the region around stomach/duodenum, prominent organ drifts could be observed in both the original and the downsampled imaging data. An increasing displacement of approximately 2mm was observed for the kidney, while an area around the stomach showed sudden displacements of 4mm. Comparison of the motile points over time showed high reproducibility between the displacements of high-resolution and downsampled volumes: over a 17min acquisition, the componentwise RMS error was not more than 0.38mm.Based on the synthetic experiments, 3D nonrigid image registration shows little sensitivity to image resolution and the displacement information is preserved even when halving the
Does the mitral annulus shrink or enlarge during systole? A real-time 3D echocardiography study.
Kwan, Jun; Jeon, Min-Jae; Kim, Dae-Hyeok; Park, Keum-Soo; Lee, Woo-Hyung
2009-04-01
This study was conducted to explore the geometrical changes of the mitral annulus during systole. The 3D shape of the mitral annulus was reconstructed in 13 normal subjects who had normal structure of the mitral apparatus using real-time 3D echocardiography (RT3DE) and 3D computer software. The two orthogonal (antero-posterior and commissure-commissure) dimensions, the areas (2D projected and 3D surface) and the non-planarity of the mitral annulus were estimated during early, mid and late systole. We demonstrated that the MA had a "saddle shape" appearance and it consistently enlarged mainly in the antero-posterior direction from early to late systole with lessening of its non-planarity, as was determined by 3D reconstruction using RT3DE and 3D computer software.
Accurate 2D/3D electromagnetic modeling for time-domain airborne EM systems
NASA Astrophysics Data System (ADS)
Yin, C.; Hodges, G.
2012-12-01
The existing industry software cannot deliver correct results for 3D time-domain airborne EM responses. In this paper, starting from the Fourier transform and convolution, we compare the stability of different modeling techniques and analyze the reason for instable calculations of the time-domain airborne EM responses. We find that the singularity of the impulse responses of EM systems at very early time that are used in the convolution is responsible for the instability of the modeling (Fig.1). Based on this finding, we put forward an algorithm that uses step response rather than impulse response of the airborne EM system for the convolution and create a stable algorithm that delivers precise results and maintains well the integral/derivative relationship between the magnetic field B and the magnetic induction dB/dt. A three-step transformation procedure for the modeling is proposed: 1) output the frequency-domain EM response data from the existing software; 2) transform into step-response by digital Fourier/Hankel transform; 3) convolve the step response with the transmitting current or its derivatives. The method has proved to be working very well (Fig. 2). The algorithm can be extended to the modeling of other time-domain ground and airborne EM system responses.Fig. 1: Comparison of impulse and step responses for an airborne EM system Fig. 2: Bz and dBz/dt calculated from step (middle panel) and impulse responses (lower panel) for the same 3D model as in Fig.1.
NASA Astrophysics Data System (ADS)
Xue, Yuan; Cheng, Teng; Xu, Xiaohai; Gao, Zeren; Li, Qianqian; Liu, Xiaojing; Wang, Xing; Song, Rui; Ju, Xiangyang; Zhang, Qingchuan
2017-01-01
This paper presents a system for positioning markers and tracking the pose of a rigid object with 6 degrees of freedom in real-time using 3D digital image correlation, with two examples for medical imaging applications. Traditional DIC method was improved to meet the requirements of the real-time by simplifying the computations of integral pixel search. Experiments were carried out and the results indicated that the new method improved the computational efficiency by about 4-10 times in comparison with the traditional DIC method. The system was aimed for orthognathic surgery navigation in order to track the maxilla segment after LeFort I osteotomy. Experiments showed noise for the static point was at the level of 10-3 mm and the measurement accuracy was 0.009 mm. The system was demonstrated on skin surface shape evaluation of a hand for finger stretching exercises, which indicated a great potential on tracking muscle and skin movements.
Parareal in time 3D numerical solver for the LWR Benchmark neutron diffusion transient model
Baudron, Anne-Marie; Riahi, Mohamed Kamel; Salomon, Julien
2014-12-15
In this paper we present a time-parallel algorithm for the 3D neutrons calculation of a transient model in a nuclear reactor core. The neutrons calculation consists in numerically solving the time dependent diffusion approximation equation, which is a simplified transport equation. The numerical resolution is done with finite elements method based on a tetrahedral meshing of the computational domain, representing the reactor core, and time discretization is achieved using a θ-scheme. The transient model presents moving control rods during the time of the reaction. Therefore, cross-sections (piecewise constants) are taken into account by interpolations with respect to the velocity of the control rods. The parallelism across the time is achieved by an adequate use of the parareal in time algorithm to the handled problem. This parallel method is a predictor corrector scheme that iteratively combines the use of two kinds of numerical propagators, one coarse and one fine. Our method is made efficient by means of a coarse solver defined with large time step and fixed position control rods model, while the fine propagator is assumed to be a high order numerical approximation of the full model. The parallel implementation of our method provides a good scalability of the algorithm. Numerical results show the efficiency of the parareal method on large light water reactor transient model corresponding to the Langenbuch–Maurer–Werner benchmark.
How linguistic and cultural forces shape conceptions of time: English and Mandarin time in 3D.
Fuhrman, Orly; McCormick, Kelly; Chen, Eva; Jiang, Heidi; Shu, Dingfang; Mao, Shuaimei; Boroditsky, Lera
2011-01-01
In this paper we examine how English and Mandarin speakers think about time, and we test how the patterns of thinking in the two groups relate to patterns in linguistic and cultural experience. In Mandarin, vertical spatial metaphors are used more frequently to talk about time than they are in English; English relies primarily on horizontal terms. We present results from two tasks comparing English and Mandarin speakers' temporal reasoning. The tasks measure how people spatialize time in three-dimensional space, including the sagittal (front/back), transverse (left/right), and vertical (up/down) axes. Results of Experiment 1 show that people automatically create spatial representations in the course of temporal reasoning, and these implicit spatializations differ in accordance with patterns in language, even in a non-linguistic task. Both groups showed evidence of a left-to-right representation of time, in accordance with writing direction, but only Mandarin speakers showed a vertical top-to-bottom pattern for time (congruent with vertical spatiotemporal metaphors in Mandarin). Results of Experiment 2 confirm and extend these findings, showing that bilinguals' representations of time depend on both long-term and proximal aspects of language experience. Participants who were more proficient in Mandarin were more likely to arrange time vertically (an effect of previous language experience). Further, bilinguals were more likely to arrange time vertically when they were tested in Mandarin than when they were tested in English (an effect of immediate linguistic context).
Hanson, Randall T.; Leake, Stanley A.
1999-01-01
This report presents a FORTRAN computer program that generates simulated time-series data as output from the U.S. Geological Survey Modular Finite-Difference Ground-Water Flow Model at user-specified point locations or a collection of points that compose a profile through the modeled region. The program can save time-series data at user-specified locations for simulated water levels, drawdown, critical head, compaction, subsidence, streamflow, streamflow stage, and streamflow leakage. A set of locations also can be specified to create time-series profiles through the model. These data can be used to establish the performance of the model and can help with model calibration and other forms of flow-system and water-resource analysis.
NASA Technical Reports Server (NTRS)
Kurtz, L. A.; Smith, R. E.; Parks, C. L.; Boney, L. R.
1978-01-01
Steady state solutions to two time dependent partial differential systems have been obtained by the Method of Lines (MOL) and compared to those obtained by efficient standard finite difference methods: (1) Burger's equation over a finite space domain by a forward time central space explicit method, and (2) the stream function - vorticity form of viscous incompressible fluid flow in a square cavity by an alternating direction implicit (ADI) method. The standard techniques were far more computationally efficient when applicable. In the second example, converged solutions at very high Reynolds numbers were obtained by MOL, whereas solution by ADI was either unattainable or impractical. With regard to 'set up' time, solution by MOL is an attractive alternative to techniques with complicated algorithms, as much of the programming difficulty is eliminated.
NASA Astrophysics Data System (ADS)
Roellig, Mike; Meier, Karsten; Metasch, Rene
2010-11-01
The recent development of 3D-integrated electronic packages is characterized by the need to increase the diversity of functions and to miniaturize. Currently many 3D-integration concepts are being developed and all of them demand new materials, new designs and new processing technologies. The combination of simulation and experimental investigation becomes increasingly accepted since simulations help to shorten the R&D cycle time and reduce costs. Numerical calculations like the Finite-Element-Method are strong tools to calculate stress conditions in electronic packages resulting from thermal strains due to the manufacturing process and environmental loads. It is essential for the application of numerical calculations that the material data is accurate and describes sufficiently the physical behaviour. The developed machine allows the measurement of time and temperature dependent micromechanical properties of solder joints. Solder joints, which are used to mechanically and electrically connect different packages, are physically measured as they leave the process. This allows accounting for process influences, which may change material properties. Additionally, joint sizes and metallurgical interactions between solder and under bump metallization can be respected by this particular measurement. The measurement allows the determination of material properties within a temperature range of 20° C-200° C. Further, the time dependent creep deformation can be measured within a strain-rate range of 10-31/s-10-81/s. Solder alloys based on Sn-Ag/Sn-Ag-Cu with additionally impurities and joint sizes down to O/ 200 μm were investigated. To finish the material characterization process the material model coefficient were extracted by FEM-Simulation to increase the accuracy of data.
NASA Astrophysics Data System (ADS)
Yaron, Avi; Bar-Zohar, Meir; Horesh, Nadav
2007-02-01
Sophisticated surgeries require the integration of several medical imaging modalities, like MRI and CT, which are three-dimensional. Many efforts are invested in providing the surgeon with this information in an intuitive & easy to use manner. A notable development, made by Visionsense, enables the surgeon to visualize the scene in 3D using a miniature stereoscopic camera. It also provides real-time 3D measurements that allow registration of navigation systems as well as 3D imaging modalities, overlaying these images on the stereoscopic video image in real-time. The real-time MIS 'see through tissue' fusion solutions enable the development of new MIS procedures in various surgical segments, such as spine, abdomen, cardio-thoracic and brain. This paper describes 3D surface reconstruction and registration methods using Visionsense camera, as a step toward fully automated multi-modality 3D registration.
Multi-user 3D film on a time-multiplexed side-emission backlight system.
Ting, Chih-Hung; Chang, Yu-Cheng; Chen, Chun-Ho; Huang, Yi-Pai; Tsai, Han-Wen
2016-10-01
The desirable features for a portable 3D display include displaying 2D and 3D images without resolution degradation for multiple users, a 2D/3D switchable functionality, and, in particular, a compact volume. To produce a portable 3D display with these desirable features, we propose here a multi-user 3D film combined with a side-emission backlight system that has a directional-sequential light distribution. According to the simulation and experimental results, the multi-user 3D film successfully uses an inverted trapezoid structure to separate the rays of each light source and increases the number of observers from one to three. Additionally, the specification of the inverted trapezoid structure can be determined via equations for different designated viewing positions of the side observer and for the ratio of light intensities for the central and side observers.
NASA Astrophysics Data System (ADS)
Gorunmez, Zohre; Jana, Debrina; He, Jie; Sagle, Laura; Beck, Thomas
Core-shell (CS) nanostructures have received attention in recent years due to their usefulness in applications ranging from catalysis to cancer treatment. SERS has been shown to be one of the most sensitive techniques for molecular detection, achieving single molecule detection. It has been established that the electromagnetic mechanism (EM) provides the main contribution to SERS enhancement due to the normal Raman spectroscopy arising from coupling of both the incident and re-emitted fields. The FDTD technique has been developed to provide numerical solutions to Maxwell's time-dependent curl equations in order to promise modeling capabilities for EM enhancement of SERS. Herein, we apply this method to the study of three morphologically different gold core-shell nanoparticles to investigate their contributions to SERS. In these structures, the dye/probe molecule resides in between the shell and the core and only the shell morphology is altered. The data shows that the surface plasmon resonances (PRs) influencing the SERS of the probe molecules, due to the coupling of the core and shell, are tunable by changing the shell morphologies and CS structures with sharp features on their surfaces highlight larger enhancements due to stronger localized surface PRs. University of Cincinnati start-up funds, NSF, Ohio Supercomputer Center, and the Ministry of National Education of the Republic of Turkey.
Monitoring strategies at phreatic wellfields: a 3D travel time approach.
Broers, Hans Peter; van Geer, Frans C
2005-01-01
Ground water quality networks for monitoring phreatic drinking water wellfields are generally established for two main purposes: (1) the short-term safeguarding of public water supply and (2) signaling and predicting future quality changes in the extracted ground water. Six monitoring configurations with different well locations and different screen depths and lengths were evaluated using a numerical model of the 3D ground water flow toward a partially penetrating pumping well in a phreatic aquifer. Travel times and breakthrough curves for observation and pumping wells were used to judge the effectiveness of different design configurations for three monitoring objectives: (1) early warning; (2) prediction of future quality changes; and (3) evaluation of protection measures inside a protection zone. Effectiveness was tested for scenarios with advective transport, first-order degradation, and linear sorption. It is shown that the location and especially the depth of the observation wells should be carefully chosen, taking into account the residence time from the surface to the observation well, the residual transit times to the extraction well, and the transformation and retardation rates. Shallow monitoring was most functional for a variety of objectives and conditions. The larger the degradation rates or retardation, the shallower should the monitoring be for effective early warning and prediction of future ground water quality. The general approach followed in the current study is applicable for many geohydrological situations, tuning specific monitoring objectives with residence times and residual transit times obtained from a site-specific ground water flow model.
Monitoring the effects of doxorubicin on 3D-spheroid tumor cells in real-time
Baek, NamHuk; Seo, Ok Won; Kim, MinSung; Hulme, John; An, Seong Soo A
2016-01-01
Recently, increasing numbers of cell culture experiments with 3D spheroids presented better correlating results in vivo than traditional 2D cell culture systems. 3D spheroids could offer a simple and highly reproducible model that would exhibit many characteristics of natural tissue, such as the production of extracellular matrix. In this paper numerous cell lines were screened and selected depending on their ability to form and maintain a spherical shape. The effects of increasing concentrations of doxorubicin (DXR) on the integrity and viability of the selected spheroids were then measured at regular intervals and in real-time. In total 12 cell lines, adenocarcinomic alveolar basal epithelial (A549), muscle (C2C12), prostate (DU145), testis (F9), pituitary epithelial-like (GH3), cervical cancer (HeLa), HeLa contaminant (HEp2), embryo (NIH3T3), embryo (PA317), neuroblastoma (SH-SY5Y), osteosarcoma U2OS, and embryonic kidney cells (293T), were screened. Out of the 12, 8 cell lines, NIH3T3, C2C12, 293T, SH-SY5Y, A549, HeLa, PA317, and U2OS formed regular spheroids and the effects of DXR on these structures were measured at regular intervals. Finally, 5 cell lines, A549, HeLa, SH-SY5Y, U2OS, and 293T, were selected for real-time monitoring and the effects of DXR treatment on their behavior were continuously recorded for 5 days. A potential correlation regarding the effects of DXR on spheroid viability and ATP production was measured on days 1, 3, and 5. Cytotoxicity of DXR seemed to occur after endocytosis, since the cellular activities and ATP productions were still viable after 1 day of the treatment in all spheroids, except SH-SY5Y. Both cellular activity and ATP production were halted 3 and 5 days from the start of the treatment in all spheroids. All cell lines maintained their spheroid shape, except SHSY-5, which behaved in an unpredictable manner when exposed to toxic concentrations of DXR. Cytotoxic effects of DXR towards SH-SY5Y seemed to cause degradation of
Time slicing in 3D momentum imaging of the hydrogen molecular ion photo-fragmentation
NASA Astrophysics Data System (ADS)
Kaya, N.; Kaya, G.; Pham, F. V.; Strohaber, J.; Kolomenskii, A. A.; Schuessler, H. A.
2017-02-01
Photo-fragmentation of the hydrogen molecular ion was investigated with 800 nm, 50 fs laser pulses by employing a time slicing 3D imaging technique that enables the simultaneous measurement of all three momentum components which are linearly related with the pixel position and slicing time. This is done for each individual product particle arriving at the detector. This mode of detection allows us to directly measure the three-dimensional fragment momentum vector distribution without having to rely on mathematical reconstruction methods, which additionally require the investigated system to be cylindrically symmetric. We experimentally reconstruct the laser-induced photo-fragmentation of the hydrogen molecular ion. In previous experiments, neutral molecules were used as a target, but in this work, performed with molecular ions, the initial vibrational level populations are well-defined after electron bombardment, which facilitates the interpretation. We show that the employed time-slicing technique allows us to register the fragment momentum distribution that reflects the initial molecular states with greater detail, revealing features that were concealed in the full time-integrated distribution on the detector.
Observing molecular dynamics with time-resolved 3D momentum imaging
NASA Astrophysics Data System (ADS)
Sturm, F. P.; Wright, T.; Bocharova, I.; Ray, D.; Shivaram, N.; Cryan, J.; Belkacem, A.; Weber, T.; Dörner, R.
2014-05-01
Photo-excitation and ionization trigger rich dynamics in molecular systems which play a key role in many important processes in nature such as vision, photosynthesis or photoprotection. Observing those reactions in real-time without significantly disturbing the molecules by a strong electric field has been a great challenge. Recent experiments using Time-of-Flight and Velocity Map Imaging techniques have revealed important information on the dynamics of small molecular systems upon photo-excitation. We have developed an apparatus for time-resolved momentum imaging of electrons and ions in all three spatial dimensions that employs two-color femtosecond laser pulses in the vacuum and extreme ultraviolet (VUV, XUV) for probing molecular dynamics. Our COLTRIMS style reaction microscope can measure electrons and ions in coincidence and reconstruct the momenta of the reaction fragments in 3D. We use a high power 800 nm laser in a loose focusing geometry gas cell to efficinetly drive High Harmonic Generation. The resulting photon flux is sufficient to perform 2-photon pump-probe experiments using VUV and XUV pulses for both pump and probe. With this setup we investigate non-Born-Oppenheimer dynamics in small molecules such as C2H4 and CO2 on a femtosecond time scale. Supported by Chemical Sciences, Geosciences and Biosciences division of BES/DOE.
Real-time 3D Fourier-domain optical coherence tomography guided microvascular anastomosis
NASA Astrophysics Data System (ADS)
Huang, Yong; Ibrahim, Zuhaib; Lee, W. P. A.; Brandacher, Gerald; Kang, Jin U.
2013-03-01
Vascular and microvascular anastomosis is considered to be the foundation of plastic and reconstructive surgery, hand surgery, transplant surgery, vascular surgery and cardiac surgery. In the last two decades innovative techniques, such as vascular coupling devices, thermo-reversible poloxamers and suture-less cuff have been introduced. Intra-operative surgical guidance using a surgical imaging modality that provides in-depth view and 3D imaging can improve outcome following both conventional and innovative anastomosis techniques. Optical coherence tomography (OCT) is a noninvasive high-resolution (micron level), high-speed, 3D imaging modality that has been adopted widely in biomedical and clinical applications. In this work we performed a proof-of-concept evaluation study of OCT as an assisted intraoperative and post-operative imaging modality for microvascular anastomosis of rodent femoral vessels. The OCT imaging modality provided lateral resolution of 12 μm and 3.0 μm axial resolution in air and 0.27 volume/s imaging speed, which could provide the surgeon with clearly visualized vessel lumen wall and suture needle position relative to the vessel during intraoperative imaging. Graphics processing unit (GPU) accelerated phase-resolved Doppler OCT (PRDOCT) imaging of the surgical site was performed as a post-operative evaluation of the anastomosed vessels and to visualize the blood flow and thrombus formation. This information could help surgeons improve surgical precision in this highly challenging anastomosis of rodent vessels with diameter less than 0.5 mm. Our imaging modality could not only detect accidental suture through the back wall of lumen but also promptly diagnose and predict thrombosis immediately after reperfusion. Hence, real-time OCT can assist in decision-making process intra-operatively and avoid post-operative complications.
Baran, A J; Yang, P; Havemann, S
2001-08-20
We calculated the scattering and absorption properties of randomly oriented hexagonal ice columns using T-matrix theory, employing analytic orientation averaging, and the finite-difference time-domain method, which uses a numerical procedure to simulate random orientation. The total optical properties calculated are the extinction efficiency, absorption efficiency, single-scattering albedo, and the asymmetry parameter. The optical properties are calculated at the wavelengths of 0.66, 8.5, and 12 mum, up to a size parameter of 20 at 0.66 mum and 15 at the two other wavelengths. The phase-matrix elements P11, P12, and P22 are also calculated and compared, up to a size parameter of 20 at 0.66 mum and 15 at 12.0 mum. The scattering and absorption solutions obtained from the two independent electromagnetic methods are compared and contrasted, as well as the central processing unit time and memory load for each size parameter. It is found that the total optical properties calculated by the two methods are well within 3% of each other for all three wavelengths and size parameters. In terms of the phase-matrix elements it is found that there are some differences between the T-matrix and the finite-difference time-domain methods appearing in all three elements. Differences between the two methods for the P11 element are seen particularly at scattering angles from approximately 120 degrees to 180 degrees ; and at the scattering angle of 180 degrees , relative differences are less than 16%. At scattering angles less than 100 degrees , agreement is generally within a few percent. Similar results are also found for the P12 and P22 elements of the phase matrix. The validity of approximating randomly oriented hexagonal ice columns by randomly oriented equal surface area circular cylinders is also investigated in terms of the linear depolarization ratio.
NASA Astrophysics Data System (ADS)
Vaiopoulos, Aristidis D.; Georgopoulos, Andreas; Lozios, Stylianos G.
2012-10-01
A relatively new field of interest, which continuously gains grounds nowadays, is digital 3D modeling. However, the methodologies, the accuracy and the time and effort required to produce a high quality 3D model have been changing drastically the last few years. Whereas in the early days of digital 3D modeling, 3D models were only accessible to computer experts in animation, working many hours in expensive sophisticated software, today 3D modeling has become reasonably fast and convenient. On top of that, with online 3D modeling software, such as 123D Catch, nearly everyone can produce 3D models with minimum effort and at no cost. The only requirement is panoramic overlapping images, of the (still) objects the user wishes to model. This approach however, has limitations in the accuracy of the model. An objective of the study is to examine these limitations by assessing the accuracy of this 3D modeling methodology, with a Terrestrial Laser Scanner (TLS). Therefore, the scope of this study is to present and compare 3D models, produced with two different methods: 1) Traditional TLS method with the instrument ScanStation 2 by Leica and 2) Panoramic overlapping images obtained with DSLR camera and processed with 123D Catch free software. The main objective of the study is to evaluate advantages and disadvantages of the two 3D model producing methodologies. The area represented with the 3D models, features multi-scale folding in a cipollino marble formation. The most interesting part and most challenging to capture accurately, is an outcrop which includes vertically orientated micro folds. These micro folds have dimensions of a few centimeters while a relatively strong relief is evident between them (perhaps due to different material composition). The area of interest is located in Mt. Hymittos, Greece.
Realistic 3D Terrain Roaming and Real-Time Flight Simulation
NASA Astrophysics Data System (ADS)
Que, Xiang; Liu, Gang; He, Zhenwen; Qi, Guang
2014-12-01
This paper presents an integrate method, which can provide access to current status and the dynamic visible scanning topography, to enhance the interactive during the terrain roaming and real-time flight simulation. A digital elevation model and digital ortho-photo map data integrated algorithm is proposed as the base algorithm for our approach to build a realistic 3D terrain scene. A new technique with help of render to texture and head of display for generating the navigation pane is used. In the flight simulating, in order to eliminate flying "jump", we employs the multidimensional linear interpolation method to adjust the camera parameters dynamically and steadily. Meanwhile, based on the principle of scanning laser imaging, we draw pseudo color figures by scanning topography in different directions according to the real-time flying status. Simulation results demonstrate that the proposed algorithm is prospective for applications and the method can improve the effect and enhance dynamic interaction during the real-time flight.
In situ visualization of magma deformation at high temperature using time-lapse 3D tomography
NASA Astrophysics Data System (ADS)
Godinho, jose; Lee, Peter; Lavallee, Yan; Kendrick, Jackie; Von-Aulock, Felix
2016-04-01
We use synchrotron based x-ray computed micro-tomography (sCT) to visualize, in situ, the microstructural evolution of magma samples 3 mm diameter with a resolution of 3 μm during heating and uniaxial compression at temperatures up to 1040 °C. The interaction between crystals, melt and gas bubbles is analysed in 4D (3D + time) during sample deformation. The ability to observe the changes of the microstructure as a function of time allow us to: a) study the effect of temperature in the ability of magma to fracture or deform; b) quantify bubble nucleation and growth rates during heating; c) study the relation between crystal displacement and volatile exsolution. We will show unique beautiful videos of how bubbles grow and coalescence, how samples and crystals within the sample fracture, heal and deform. Our study establishes in situ sCT as a powerful tool to quantify and visualize with micro-scale resolution fast processes taking place in magma that are essential to understand ascent in a volcanic conduit and validate existing models for determining the explosivity of volcanic eruptions. Tracking simultaneously the time and spatial changes of magma microstructures is shown to be primordial to study disequilibrium processes between crystals, melt and gas phases.
NASA Astrophysics Data System (ADS)
da Silva, F.; Heuraux, S.; Ricardo, E.; Quental, P.; Ferreira, J.
2016-11-01
We conducted a first assessment of the measurement performance of the in-vessel components at gap 6 of the ITER plasma position reflectometry with the aid of a synthetic Ordinary Mode (O-mode) broadband frequency-modulated continuous-wave reflectometer implemented with REFMUL, a 2D finite-difference time-domain full-wave Maxwell code. These simulations take into account the system location within the vacuum vessel as well as its access to the plasma. The plasma case considered is a baseline scenario from Fusion for Energy. We concluded that for the analyzed scenario, (i) the plasma curvature and non-equatorial position of the antenna have neglectable impact on the measurements; (ii) the cavity-like space surrounding the antenna can cause deflection and splitting of the probing beam; and (iii) multi-reflections on the blanket wall cause a substantial error preventing the system from operating within the required error margin.
NASA Astrophysics Data System (ADS)
Meléndez, Adrià; Korenaga, Jun; Sallarès, Valentí; Miniussi, Alain; Ranero, César
2015-04-01
We present a new 3-D travel-time tomography code (TOMO3D) for the modelling of active-source seismic data that uses the arrival times of both refracted and reflected seismic phases to derive the propagation velocity distribution and the geometry of reflecting boundaries in the subsurface. The combination of refracted and reflected data provides a denser coverage of the study area. Moreover, because refractions only depend on the velocity parameters, they contribute to the mitigation of the negative effect of the ambiguity between layer thickness and propagation velocity that is intrinsic to the reflections that define these boundaries. This code is based on its renowned 2-D version TOMO2D from which it inherited the methods to solve the forward and inverse problems. The forward travel-time calculations are conducted using a hybrid ray-tracing technique combining the graph or shortest path method and the bending method. The LSQR algorithm is used to perform the iterative inversion of travel-time residuals to update the initial velocity and depth models. In order to cope with the increased computational demand due to the incorporation of the third dimension, the forward problem solver, which takes by far most of the run time (~90%), has been parallelised with a combination of MP and MPI standards. This parallelisation distributes the ray-tracing and travel-time calculations among the available computational resources, allowing the user to set the number of nodes, processors and cores to be used. The code's performance was evaluated with a complex synthetic case simulating a subduction zone. The objective is to retrieve the velocity distribution of both upper and lower plates and the geometry of the interplate and Moho boundaries. Our tomography method is designed to deal with a single reflector per inversion, and we show that a data-driven layer-stripping strategy allows to successfully recover several reflectors in successive inversions. This strategy consists in
A Computational Method for 3D Anisotropic Travel-time Tomography of Rocks in the Laboratory
NASA Astrophysics Data System (ADS)
Ghofranitabari, Mehdi; Young, R. Paul
2013-04-01
True triaxial loading in the laboratory applies three principal stresses on a cubic rock specimen. Elliptical anisotropy and distributed heterogeneities are introduced in the rock due to closure and opening of the pre-existing cracks and creation and growth of the new aligned cracks. The rock sample is tested in a Geophysical Imaging Cell that is armed with an Acoustic Emission monitoring system which can perform transducer to transducer velocity surveys to image velocity structure of the sample during the experiment. Ultrasonic travel-time tomography as a non-destructive method outfits a map of wave propagation velocity in the sample in order to detect the uniformly distributed or localised heterogeneities and provide the spatial variation and temporal evolution of induced damages in rocks at various stages of loading. The rock sample is partitioned into cubic grid cells as model space. Ray-based tomography method measuring body wave travel time along ray paths between pairs of emitting and receiving transducers is used to calculate isotropic ray-path segment matrix elements (Gij) which contain segment lengths of the ith ray in the jth cell in three dimensions. Synthetic P wave travel times are computed between pairs of transducers in a hypothetical isotropic heterogeneous cubic sample as data space along with an error due to precision of measurement. 3D strain of the squeezed rock and the consequent geometrical deformation is also included in computations for further accuracy. Singular Value Decomposition method is used for the inversion from data space to model space. In the next step, the anisotropic ray-path segment matrix and the corresponded data space are computed for hypothetical anisotropic heterogeneous samples based on the elliptical anisotropic model of velocity which is obtained from the real laboratory experimental data. The method is examined for several different synthetic heterogeneous models. An "Inaccuracy factor" is utilized to inquire the
Time-resolved 3D contrast-enhanced MRA of an extended FOV using continuous table motion.
Madhuranthakam, Ananth J; Kruger, David G; Riederer, Stephen J; Glockner, James F; Hu, Houchun H
2004-03-01
A method is presented for acquiring 3D time-resolved MR images of an extended (>100 cm) longitudinal field of view (FOV), as used for peripheral MR angiographic runoff studies. Previous techniques for long-FOV peripheral MRA have generally provided a single image (i.e., with no time resolution). The technique presented here generates a time series of 3D images of the FOV that lies within the homogeneous volume of the magnet. This is achieved by differential sampling of 3D k-space during continuous motion of the patient table. Each point in the object is interrogated in five consecutive 3D image sets generated at 2.5-s intervals. The method was tested experimentally in eight human subjects, and the leading edge of the bolus was observed in real time and maintained within the imaging FOV. The data revealed differential bolus velocities along the vasculature of the legs.
Finite-Difference Algorithms For Computing Sound Waves
NASA Technical Reports Server (NTRS)
Davis, Sanford
1993-01-01
Governing equations considered as matrix system. Method variant of method described in "Scheme for Finite-Difference Computations of Waves" (ARC-12970). Present method begins with matrix-vector formulation of fundamental equations, involving first-order partial derivatives of primitive variables with respect to space and time. Particular matrix formulation places time and spatial coordinates on equal footing, so governing equations considered as matrix system and treated as unit. Spatial and temporal discretizations not treated separately as in other finite-difference methods, instead treated together by linking spatial-grid interval and time step via common scale factor related to speed of sound.
Real-time sensing of mouth 3-D position and orientation
NASA Astrophysics Data System (ADS)
Burdea, Grigore C.; Dunn, Stanley M.; Mallik, Matsumita; Jun, Heesung
1990-07-01
A key problem in using digital subtraction radiography in dentistry is the ability to reposition the X-ray source and patient so as to reproduce an identical imaging geometry. In this paper we describe an approach to solving this problem based on real time sensing of the 3-D position and orientation of the patient's mouth. The research described here is part of a program which has a long term goal to develop an automated digital subtraction radiography system. This will allow the patient and X-ray source to be accurately repositioned without the mechanical fixtures that are presently used to preserve the imaging geometry. If we can measure the position and orientation of the mouth, then the desired position of the source can be computed as the product of the transformation matrices describing the desired imaging geometry and the position vector of the targeted tooth. Position and orientation of the mouth is measured by a real time sensing device using low-frequency magnetic field technology. We first present the problem of repositioning the patient and source and then outline our analytic solution. Then we describe an experimental setup to measure the accuracy, reproducibility and resolution of the sensor and present results of preliminary experiments.
Intersymbol Interference Investigations Using a 3D Time-Dependent Traveling Wave Tube Model
NASA Technical Reports Server (NTRS)
Kory, Carol L.; Andro, Monty
2002-01-01
For the first time, a time-dependent, physics-based computational model has been used to provide a direct description of the effects of the traveling wave tube amplifier (TWTA) on modulated digital signals. The TWT model comprehensively takes into account the effects of frequency dependent AM/AM and AM/PM conversion; gain and phase ripple; drive-induced oscillations; harmonic generation; intermodulation products; and backward waves. Thus, signal integrity can be investigated in the presence of these sources of potential distortion as a function of the physical geometry and operating characteristics of the high power amplifier and the operational digital signal. This method promises superior predictive fidelity compared to methods using TWT models based on swept- amplitude and/or swept-frequency data. First, the TWT model using the three dimensional (3D) electromagnetic code MAFIA is presented. Then, this comprehensive model is used to investigate approximations made in conventional TWT black-box models used in communication system level simulations. To quantitatively demonstrate the effects these approximations have on digital signal performance predictions, including intersymbol interference (ISI), the MAFIA results are compared to the system level analysis tool, Signal Processing Workstation (SPW), using high order modulation schemes including 16 and 64-QAM.
Geo-Referenced Mapping Using AN Airborne 3d Time-Of Camera
NASA Astrophysics Data System (ADS)
Kohoutek, T. K.; Nitsche, M.; Eisenbeiss, H.
2011-09-01
This paper presents the first experience of a close range bird's eye view photogrammetry with range imaging (RIM) sensors for the real time generation of high resolution geo-referenced 3D surface models. The aim of this study was to develop a mobile, versatile and less costly outdoor survey methodology to measure natural surfaces compared to the terrestrial laser scanning (TLS). Two commercial RIM cameras (SR4000 by MESA Imaging AG and a CamCube 2.0 by PMDTechnologies GmbH) were mounted on a lightweight crane and on an unmanned aerial vehicle (UAV). The field experiments revealed various challenges in real time deployment of the two state-of-the-art RIM systems, e.g. processing of the large data volume. Acquisition strategy and data processing and first measurements are presented. The precision of the measured distances is less than 1 cm for good conditions. However, the measurement precision degraded under the test conditions due to direct sunlight, strong illumination contrasts and helicopter vibrations.
Intersymbol Interference Investigations Using a 3D Time-Dependent Traveling Wave Tube Model
NASA Technical Reports Server (NTRS)
Kory, Carol L.; Andro, Monty; Downey, Alan (Technical Monitor)
2001-01-01
For the first time, a physics based computational model has been used to provide a direct description of the effects of the TWT (Traveling Wave Tube) on modulated digital signals. The TWT model comprehensively takes into account the effects of frequency dependent AM/AM and AM/PM conversion; gain and phase ripple; drive-induced oscillations; harmonic generation; intermodulation products; and backward waves. Thus, signal integrity can be investigated in the presence of these sources of potential distortion as a function of the physical geometry of the high power amplifier and the operational digital signal. This method promises superior predictive fidelity compared to methods using TWT models based on swept amplitude and/or swept frequency data. The fully three-dimensional (3D), time-dependent, TWT interaction model using the electromagnetic code MAFIA is presented. This model is used to investigate assumptions made in TWT black box models used in communication system level simulations. In addition, digital signal performance, including intersymbol interference (ISI), is compared using direct data input into the MAFIA model and using the system level analysis tool, SPW (Signal Processing Worksystem).
Time-lapse analysis of sparse 3D seismic data from the CO2 storage pilot site at Ketzin, Germany
NASA Astrophysics Data System (ADS)
Ivandic, M.; Yang, C.; Lüth, S.; Cosma, C.; Juhlin, C.
2012-04-01
Capture and geological storage of CO2 is considered to be a feasible method for reducing carbon emissions. In April 2004, a research pilot project in the German town of Ketzin started as the first onshore CO2 storage project in Europe. Injection started in June 2008 and until the latest repeat survey in February 2011 around 45 kilotons of CO2 had been injected into a saline aquifer at approximately 630-650 m depth. Different seismic methods, such as time-lapse Vertical Seismic Profiling (VSP), Crosswell, Moving Source Profiling (MSP) and surface seismics have been employed to detect and monitor changes in the reservoir. We present here time-lapse results from sparse 3D seismic surveying with a "star" geometry, i.e. with a radial distribution of acquisition profiles directed towards the approximate location of the injection well, which were acquired to link downhole surveys with full 3D surface seismic surveys. The main objectives of the sparse 3D surveys were (1) to identify changes in the seismic response related to the injection of CO2 between the repeat surveys and baseline survey and (2) to compare these results with those from the repeat 3D seismic survey. The results are consistent with the 3D seismic time-lapse studies over the injection site and show that the sparse 3D geometry can be used to qualitatively map the migration of the CO2 plume within the saline reservoir, as well as potential migration out of the reservoir rock at a significantly lower effort than the full 3D surveying. The latest repeat survey indicates preferential migration of the CO2 to the west. Both sparse 3D repeat surveys show that the CO2 is being confined within the aquifer, implying that there is no leakage into the caprock at the time of the repeat surveys. The same observation was obtained from the 3D dataset.
Finite-difference computations of rotor loads
NASA Technical Reports Server (NTRS)
Caradonna, F. X.; Tung, C.
1985-01-01
The current and future potential of finite difference methods for solving real rotor problems which now rely largely on empiricism are demonstrated. The demonstration consists of a simple means of combining existing finite-difference, integral, and comprehensive loads codes to predict real transonic rotor flows. These computations are performed for hover and high-advanced-ratio flight. Comparisons are made with experimental pressure data.
Finite-difference computations of rotor loads
NASA Technical Reports Server (NTRS)
Caradonna, F. X.; Tung, C.
1985-01-01
This paper demonstrates the current and future potential of finite-difference methods for solving real rotor problems which now rely largely on empiricism. The demonstration consists of a simple means of combining existing finite-difference, integral, and comprehensive loads codes to predict real transonic rotor flows. These computations are performed for hover and high-advance-ratio flight. Comparisons are made with experimental pressure data.
3D nanopillar optical antenna photodetectors.
Senanayake, Pradeep; Hung, Chung-Hong; Shapiro, Joshua; Scofield, Adam; Lin, Andrew; Williams, Benjamin S; Huffaker, Diana L
2012-11-05
We demonstrate 3D surface plasmon photoresponse in nanopillar arrays resulting in enhanced responsivity due to both Localized Surface Plasmon Resonances (LSPRs) and Surface Plasmon Polariton Bloch Waves (SPP-BWs). The LSPRs are excited due to a partial gold shell coating the nanopillar which acts as a 3D Nanopillar Optical Antenna (NOA) in focusing light into the nanopillar. Angular photoresponse measurements show that SPP-BWs can be spectrally coincident with LSPRs to result in a x2 enhancement in responsivity at 1180 nm. Full-wave Finite Difference Time Domain (FDTD) simulations substantiate both the spatial and spectral coupling of the SPP-BW / LSPR for enhanced absorption and the nature of the LSPR. Geometrical control of the 3D NOA and the self-aligned metal hole lattice allows the hybridization of both localized and propagating surface plasmon modes for enhanced absorption. Hybridized plasmonic modes opens up new avenues in optical antenna design in nanoscale photodetectors.
NASA Astrophysics Data System (ADS)
Choi, Hee-Jin; Park, Minyoung
2014-11-01
In spite of the developments of various autostereoscopic three-dimensional (3D) technologies, the inferior resolution of the realized 3D image is a severe problem that should be resolved. For that purpose, a time-sequential 3D display is developed to provide 3D images with higher resolution and attracts much attention. Among them, a method using a directional backlight unit (DBLU) is an effective way to be adopted in liquid crystal display (LCD) with higher frame rate such as 120Hz. However, in the conventional time-sequential system, the insufficient frame rate results a flicker problem which means a recognizable fluctuation of image brightness. A dot dithering method can be a good solution for reducing that problem but it was impossible to observe the 3D image in side lobes because the image data and the directivity of light rays from the DBLU do not match in side lobes. In this paper, we propose a new vertical line dithering method to expand the area for 3D image observation by utilizing the side lobes. Since the side lobes locate in the left and right position of the center lobe, it is needed to arrange the image data in LCD panel and directivity of the light rays from the DBLU to have continuity in horizontal direction. Although the observed 3D images in side lobes are flipped ones, the utilization of the side lobes can increase the number of observers in horizontal direction.
3D Markov Process for Traffic Flow Prediction in Real-Time
Ko, Eunjeong; Ahn, Jinyoung; Kim, Eun Yi
2016-01-01
Recently, the correct estimation of traffic flow has begun to be considered an essential component in intelligent transportation systems. In this paper, a new statistical method to predict traffic flows using time series analyses and geometric correlations is proposed. The novelty of the proposed method is two-fold: (1) a 3D heat map is designed to describe the traffic conditions between roads, which can effectively represent the correlations between spatially- and temporally-adjacent traffic states; and (2) the relationship between the adjacent roads on the spatiotemporal domain is represented by cliques in MRF and the clique parameters are obtained by example-based learning. In order to assess the validity of the proposed method, it is tested using data from expressway traffic that are provided by the Korean Expressway Corporation, and the performance of the proposed method is compared with existing approaches. The results demonstrate that the proposed method can predict traffic conditions with an accuracy of 85%, and this accuracy can be improved further. PMID:26821025
Improvements to the ICRH antenna time-domain 3D plasma simulation model
NASA Astrophysics Data System (ADS)
Smithe, David N.; Jenkins, Thomas G.; King, J. R.
2015-12-01
We present a summary of ongoing improvements to the 3D time-domain plasma modeling software that has been used to look at ICRH antennas on Alcator C-Mod, NSTX, and ITER [1]. Our past investigations have shown that in low density cases where the slow wave is propagating, strong amplitude lower hybrid resonant fields can occur. Such a scenario could result in significant parasitic power loss in the SOL. The primary resonance broadening in this case is likely collisions with neutral gas, and thus we are upgrading the model to include realistic neutral gas in the SOL, in order to provide a better understanding of energy balance in these situations. Related to this, we are adding a temporal variation capability to the local plasma density in front of the antenna in order to investigate whether the near fields of the antenna could modify the local density sufficiently to initiate a low density situation. We will start with a simple scalar ponderomotive potential density expulsion model [2] for the density evolution, but are also looking to eventually couple to a more complex fluid treatment that would include tensor pressures and convective physics and sources of neutrals and ionization. We also review continued benchmarking efforts, and ongoing and planned improvements to the computational algorithms, resulting from experience gained during our recent supercomputing runs on the Titan supercomputer, including GPU operations.
Registration of Real-Time 3-D Ultrasound to Tomographic Images of the Abdominal Aorta.
Brekken, Reidar; Iversen, Daniel Høyer; Tangen, Geir Arne; Dahl, Torbjørn
2016-08-01
The purpose of this study was to develop an image-based method for registration of real-time 3-D ultrasound to computed tomography (CT) of the abdominal aorta, targeting future use in ultrasound-guided endovascular intervention. We proposed a method in which a surface model of the aortic wall was segmented from CT, and the approximate initial location of this model relative to the ultrasound volume was manually indicated. The model was iteratively transformed to automatically optimize correspondence to the ultrasound data. Feasibility was studied using data from a silicon phantom and in vivo data from a volunteer with previously acquired CT. Through visual evaluation, the ultrasound and CT data were seen to correspond well after registration. Both aortic lumen and branching arteries were well aligned. The processing was done offline, and the registration took approximately 0.2 s per ultrasound volume. The results encourage further patient studies to investigate accuracy, robustness and clinical value of the approach.
Time lapse 3D geoelectric measurements for monitoring of in-situ remediation
NASA Astrophysics Data System (ADS)
Tildy, Péter; Neducza, Boriszláv; Nagy, Péter; Kanli, Ali Ismet; Hegymegi, Csaba
2017-01-01
In the last decade, different kinds of in-situ methods have been increasingly used for hydrocarbon contamination remediation due to their effectiveness. One of these techniques operates by injection of chemical oxidant solution to remove (degrade) the subsurface contaminants. Our aim was to develop a surface (non-destructive) measurement strategy to monitor oxidative in-situ remediation processes. The difficulties of the presented study originate from the small volume of conductive solution that can be used due to environmental considerations, the effect of conductive groundwater and the high clay content of the targeted layer. Therefore a site specific synthetic modelling was necessary for measurement design involving the results of preliminary 2D ERT measurements, electrical conductivity measurements of different active agents and expected resistivity changes calculated by soil resistivity modelling. The results of soil resistivity modelling have suggested that the reagent have complex effects on contaminated soils because of chemical biodegradation. As a result the plume of resistivity changes caused by the injected agent was determined showing strong fracturing effect because of the high pressure of injection. Based on the sophisticated tests and synthetic modelling 3D time-lapse geo-electric measurements were proven to provide a usable monitoring tool for in-situ remediation to help in-field design of such techniques.
The compatibility of consumer DLP projectors with time-sequential stereoscopic 3D visualisation
NASA Astrophysics Data System (ADS)
Woods, Andrew J.; Rourke, Tegan
2007-02-01
A range of advertised "Stereo-Ready" DLP projectors are now available in the market which allow high-quality flickerfree stereoscopic 3D visualization using the time-sequential stereoscopic display method. The ability to use a single projector for stereoscopic viewing offers a range of advantages, including extremely good stereoscopic alignment, and in some cases, portability. It has also recently become known that some consumer DLP projectors can be used for timesequential stereoscopic visualization, however it was not well understood which projectors are compatible and incompatible, what display modes (frequency and resolution) are compatible, and what stereoscopic display quality attributes are important. We conducted a study to test a wide range of projectors for stereoscopic compatibility. This paper reports on the testing of 45 consumer DLP projectors of widely different specifications (brand, resolution, brightness, etc). The projectors were tested for stereoscopic compatibility with various video formats (PAL, NTSC, 480P, 576P, and various VGA resolutions) and video input connections (composite, SVideo, component, and VGA). Fifteen projectors were found to work well at up to 85Hz stereo in VGA mode. Twenty three projectors would work at 60Hz stereo in VGA mode.
A real-time emergency response workstation using a 3-D numerical model initialized with sodar
Lawver, B.S.; Sullivan, T.J.; Baskett, R.L.
1993-01-28
Many emergency response dispersion modeling systems provide simple Gaussian models driven by single meteorological tower inputs to estimate the downwind consequences from accidental spills or stack releases. Complex meteorological or terrain settings demand more sophisticated resolution of the three-dimensional structure of the atmosphere to reliably calculate plume dispersion. Mountain valleys and sea breeze flows are two common examples of such settings. To address these complexities, the authors have implemented the three-dimensional diagnostic MATHEW mass-adjusted wind field and ADPIC particle-in-cell dispersion models on a workstation for use in real-time emergency response modeling. MATHEW/ADPIC have shown their utility in a variety of complex settings over the last 15 years within the Department of Energy`s Atmospheric Release Advisory Capability (ARAC) project. The models are initialized using an array of surface wind measurements from meteorological towers coupled with vertical profiles from an acoustic sounder (sodar). The workstation automatically acquires the meteorological data every 15 minutes. A source term is generated using either defaults or a real-time stack monitor. Model outputs include contoured isopleths displayed on site geography or plume densities shown over 3-D color shaded terrain. The models are automatically updated every 15 minutes to provide the emergency response manager with a continuous display of potentially hazardous ground-level conditions if an actual release were to occur. Model run time is typically less than 2 minutes on 6 megaflop ({approximately}30 MIPS) workstations. Data acquisition, limited by dial-up modem communications, requires 3 to 5 minutes.
NASA Astrophysics Data System (ADS)
Javidi, Bahram; Yeom, Seokwon; Moon, Inkyu; Daneshpanah, Mehdi
2006-05-01
In this paper, we present an overview of three-dimensional (3D) optical imaging techniques for real-time automated sensing, visualization, and recognition of dynamic biological microorganisms. Real time sensing and 3D reconstruction of the dynamic biological microscopic objects can be performed by single-exposure on-line (SEOL) digital holographic microscopy. A coherent 3D microscope-based interferometer is constructed to record digital holograms of dynamic micro biological events. Complex amplitude 3D images of the biological microorganisms are computationally reconstructed at different depths by digital signal processing. Bayesian segmentation algorithms are applied to identify regions of interest for further processing. A number of pattern recognition approaches are addressed to identify and recognize the microorganisms. One uses 3D morphology of the microorganisms by analyzing 3D geometrical shapes which is composed of magnitude and phase. Segmentation, feature extraction, graph matching, feature selection, and training and decision rules are used to recognize the biological microorganisms. In a different approach, 3D technique is used that are tolerant to the varying shapes of the non-rigid biological microorganisms. After segmentation, a number of sampling patches are arbitrarily extracted from the complex amplitudes of the reconstructed 3D biological microorganism. These patches are processed using a number of cost functions and statistical inference theory for the equality of means and equality of variances between the sampling segments. Also, we discuss the possibility of employing computational integral imaging for 3D sensing, visualization, and recognition of biological microorganisms illuminated under incoherent light. Experimental results with several biological microorganisms are presented to illustrate detection, segmentation, and identification of micro biological events.
Efficient near-real-time monitoring of 3D surface displacements in complex landslide scenarios
NASA Astrophysics Data System (ADS)
Allasia, Paolo; Manconi, Andrea; Giordan, Daniele; Baldo, Marco; Lollino, Giorgio
2013-04-01
Ground deformation measurements play a key role in monitoring activities of landslides. A wide spectrum of instruments and methods is nowadays available, going from in-situ to remote sensing approaches. In emergency scenarios, monitoring is often based on automated instruments capable to achieve accurate measurements, possibly with a very high temporal resolution, in order to achieve the best information about the evolution of the landslide in near-real-time, aiming at early warning purposes. However, the available tools for a rapid and efficient exploitation, understanding and interpretation of the retrieved measurements is still a challenge. This issue is particularly relevant in contexts where monitoring is fundamental to support early warning systems aimed at ensuring safety to people and/or infrastructures. Furthermore, in many cases the results obtained might be of difficult reading and divulgation, especially when people of different backgrounds are involved (e.g. scientists, authorities, civil protection operators, decision makers, etc.). In this work, we extend the concept of automatic and near real time from the acquisition of measurements to the data processing and divulgation, in order to achieve an efficient monitoring of surface displacements in landslide scenarios. We developed an algorithm that allows to go automatically and in near-real-time from the acquisition of 3D displacements on a landslide area to the efficient divulgation of the monitoring results via WEB. This set of straightforward procedures is called ADVICE (ADVanced dIsplaCement monitoring system for Early warning), and has been already successfully applied in several emergency scenarios. The algorithm includes: (i) data acquisition and transfer protocols; (ii) data collection, filtering, and validation; (iii) data analysis and restitution through a set of dedicated software, such as ©3DA [1]; (iv) recognition of displacement/velocity threshold and early warning (v) short term
3D Printing in the Laboratory: Maximize Time and Funds with Customized and Open-Source Labware.
Coakley, Meghan; Hurt, Darrell E
2016-08-01
3D printing, also known as additive manufacturing, is the computer-guided process of fabricating physical objects by depositing successive layers of material. It has transformed manufacturing across virtually every industry, bringing about incredible advances in research and medicine. The rapidly growing consumer market now includes convenient and affordable "desktop" 3D printers. These are being used in the laboratory to create custom 3D-printed equipment, and a growing community of designers are contributing open-source, cost-effective innovations that can be used by both professionals and enthusiasts. User stories from investigators at the National Institutes of Health and the biomedical research community demonstrate the power of 3D printing to save valuable time and funding. While adoption of 3D printing has been slow in the biosciences to date, the potential is vast. The market predicts that within several years, 3D printers could be commonplace within the home; with so many practical uses for 3D printing, we anticipate that the technology will also play an increasingly important role in the laboratory.
Real-Time Climate Simulations in the Interactive 3D Game Universe Sandbox ²
NASA Astrophysics Data System (ADS)
Goldenson, N. L.
2014-12-01
Exploration in an open-ended computer game is an engaging way to explore climate and climate change. Everyone can explore physical models with real-time visualization in the educational simulator Universe Sandbox ² (universesandbox.com/2), which includes basic climate simulations on planets. I have implemented a time-dependent, one-dimensional meridional heat transport energy balance model to run and be adjustable in real time in the midst of a larger simulated system. Universe Sandbox ² is based on the original game - at its core a gravity simulator - with other new physically-based content for stellar evolution, and handling collisions between bodies. Existing users are mostly science enthusiasts in informal settings. We believe that this is the first climate simulation to be implemented in a professionally developed computer game with modern 3D graphical output in real time. The type of simple climate model we've adopted helps us depict the seasonal cycle and the more drastic changes that come from changing the orbit or other external forcings. Users can alter the climate as the simulation is running by altering the star(s) in the simulation, dragging to change orbits and obliquity, adjusting the climate simulation parameters directly or changing other properties like CO2 concentration that affect the model parameters in representative ways. Ongoing visuals of the expansion and contraction of sea ice and snow-cover respond to the temperature calculations, and make it accessible to explore a variety of scenarios and intuitive to understand the output. Variables like temperature can also be graphed in real time. We balance computational constraints with the ability to capture the physical phenomena we wish to visualize, giving everyone access to a simple open-ended meridional energy balance climate simulation to explore and experiment with. The software lends itself to labs at a variety of levels about climate concepts including seasons, the Greenhouse effect
Real-time 3D adaptive filtering for portable imaging systems
NASA Astrophysics Data System (ADS)
Bockenbach, Olivier; Ali, Murtaza; Wainwright, Ian; Nadeski, Mark
2015-03-01
Portable imaging devices have proven valuable for emergency medical services both in the field and hospital environments and are becoming more prevalent in clinical settings where the use of larger imaging machines is impractical. 3D adaptive filtering is one of the most advanced techniques aimed at noise reduction and feature enhancement, but is computationally very demanding and hence often not able to run with sufficient performance on a portable platform. In recent years, advanced multicore DSPs have been introduced that attain high processing performance while maintaining low levels of power dissipation. These processors enable the implementation of complex algorithms like 3D adaptive filtering, improving the image quality of portable medical imaging devices. In this study, the performance of a 3D adaptive filtering algorithm on a digital signal processor (DSP) is investigated. The performance is assessed by filtering a volume of size 512x256x128 voxels sampled at a pace of 10 MVoxels/sec.
Time-lapse 3D VSP monitoring of a carbon dioxide injection project at Delhi Field, Louisiana
NASA Astrophysics Data System (ADS)
Lubis, Muhammad Husni Mubarak
Delhi Field is a producing oil field located in northeastern Louisiana. The estimated original oil in place (OOIP) is 357 mmbo and approximately 54% of OOIP has been produced through the primary production and water-flooding. A CO2-EOR program has been implemented since November 2009 to recover an additional 17% of OOIP. Reservoir surveillance using time-lapse 3D seismic data has been conducted to monitor the CO2 sweep efficiency. The goal of this study is to monitor the CO2 flow-path in the area around the injector using time-lapse 3D VSP data. For this purpose, two 3D VSPs acquired in June 2010 and again in August 2011 were processed together. Fluid substitution and VSP modeling were performed to understand the influence of pore-fluid saturation change on VSP records. A cross-equalization was performed to improve the similarity of the datasets. This step is important to reduce the ambiguity in time-lapse observation. The splice of a 3D VSP image into the surface seismic data becomes the key point in determining the reflector of the reservoir. By integrating the observation from the modeling and the splice of 3D VSP image to surface seismic, the CO2 flow-path from injector 164-3 can be identified from 3D time-lapse VSP data. The CO2 was not radially distributed around the injector, but moved toward southwest direction. This finding is also consistent with the flow-path interpreted from surface seismic. This consistency implies that time-lapse 3D VSP surveys at Delhi Field confirm and augment the time-lapse interpretation from surface seismic data.
Waveform prediction with travel time model LLNL-G3D assessed by Spectral-Element simulation
NASA Astrophysics Data System (ADS)
Morency, C.; Simmons, N. A.; Myers, S. C.; Johannesson, G.; Matzel, E.
2013-12-01
Seismic monitoring requires accurate prediction of travel times, amplitudes, and whole waveforms. As a first step towards developing a model that is suited to seismic monitoring, LLNL developed the LLNL-G3D P-wave travel time model (Simmons et al., 2012, JGR) to improve seismic event location accuracy. LLNL-G3D fulfills the need to predict travel times from events occurring anywhere in the globe to stations ranging from local to teleseismic distances. Prediction over this distance range requires explicit inclusion of detailed 3-dimensional structure from Earths surface to the core. An open question is how well a model optimized to fit P-wave travel time data can predict waveforms? We begin to address this question by using the P-wave velocities in LLNL-G3D as a proxy for S-wave velocity and density, then performing waveform simulations via the SPECFEM3D_GLOBE spectral-element code. We assess the ability of LLNL-G3D to predict waveforms and draw comparisons to other 3D models available in SPECFEM3D_GLOBE package and widely used in the scientific community. Although we do not expect the P-wave model to perform as well as waveform based models, we view our effort as a first step towards accurate prediction of time times, amplitudes and full waveforms based on a single model. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.
Simultaneous elastic parameter inversion in 2-D/3-D TTI medium combined later arrival times
NASA Astrophysics Data System (ADS)
Bai, Chao-ying; Wang, Tao; Yang, Shang-bei; Li, Xing-wang; Huang, Guo-jiao
2016-04-01
Traditional traveltime inversion for anisotropic medium is, in general, based on a "weak" assumption in the anisotropic property, which simplifies both the forward part (ray tracing is performed once only) and the inversion part (a linear inversion solver is possible). But for some real applications, a general (both "weak" and "strong") anisotropic medium should be considered. In such cases, one has to develop a ray tracing algorithm to handle with the general (including "strong") anisotropic medium and also to design a non-linear inversion solver for later tomography. Meanwhile, it is constructive to investigate how much the tomographic resolution can be improved by introducing the later arrivals. For this motivation, we incorporated our newly developed ray tracing algorithm (multistage irregular shortest-path method) for general anisotropic media with a non-linear inversion solver (a damped minimum norm, constrained least squares problem with a conjugate gradient approach) to formulate a non-linear inversion solver for anisotropic medium. This anisotropic traveltime inversion procedure is able to combine the later (reflected) arrival times. Both 2-D/3-D synthetic inversion experiments and comparison tests show that (1) the proposed anisotropic traveltime inversion scheme is able to recover the high contrast anomalies and (2) it is possible to improve the tomographic resolution by introducing the later (reflected) arrivals, but not as expected in the isotropic medium, because the different velocity (qP, qSV and qSH) sensitivities (or derivatives) respective to the different elastic parameters are not the same but are also dependent on the inclination angle.
Discovery of a biofilm electrocline using real-time 3D metabolite analysis.
Koley, Dipankar; Ramsey, Matthew M; Bard, Allen J; Whiteley, Marvin
2011-12-13
Bacteria are social organisms that possess multiple pathways for sensing and responding to small molecules produced by other microbes. Most bacteria in nature exist in sessile communities called biofilms, and the ability of biofilm bacteria to sense and respond to small molecule signals and cues produced by neighboring biofilm bacteria is particularly important. To understand microbial interactions between biofilms, it is necessary to perform rapid, real-time spatial quantification of small molecules in microenvironments immediately surrounding biofilms; however, such measurements have been elusive. In this study, scanning electrochemical microscopy was used to quantify small molecules surrounding a biofilm in 3D space. Measuring concentrations of the redox-active signaling molecule pyocyanin (PYO) produced by biofilms of the bacterium Pseudomonas aeruginosa revealed a high concentration of PYO that is actively maintained in the reduced state proximal to the biofilm. This gradient results in a reduced layer of PYO that we have termed the PYO "electrocline," a gradient of redox potential, which extends several hundred microns from the biofilm surface. We also demonstrate that the PYO electrocline is formed under electron acceptor-limiting conditions, and that growth conditions favoring formation of the PYO electrocline correlate to an increase in soluble iron. Additionally, we have taken a "reactive image" of a biofilm surface, demonstrating the rate of bacterial redox activity across a 2D surface. These studies establish methodology for spatially coordinated concentration and redox status measurements of microbe-produced small molecules and provide exciting insights into the roles these molecules play in microbial competition and nutrient acquisition.
Compact finite difference method for American option pricing
NASA Astrophysics Data System (ADS)
Zhao, Jichao; Davison, Matt; Corless, Robert M.
2007-09-01
A compact finite difference method is designed to obtain quick and accurate solutions to partial differential equation problems. The problem of pricing an American option can be cast as a partial differential equation. Using the compact finite difference method this problem can be recast as an ordinary differential equation initial value problem. The complicating factor for American options is the existence of an optimal exercise boundary which is jointly determined with the value of the option. In this article we develop three ways of combining compact finite difference methods for American option price on a single asset with methods for dealing with this optimal exercise boundary. Compact finite difference method one uses the implicit condition that solutions of the transformed partial differential equation be nonnegative to detect the optimal exercise value. This method is very fast and accurate even when the spatial step size h is large (h[greater-or-equal, slanted]0.1). Compact difference method two must solve an algebraic nonlinear equation obtained by Pantazopoulos (1998) at every time step. This method can obtain second order accuracy for space x and requires a moderate amount of time comparable with that required by the Crank Nicolson projected successive over relaxation method. Compact finite difference method three refines the free boundary value by a method developed by Barone-Adesi and Lugano [The saga of the American put, 2003], and this method can obtain high accuracy for space x. The last two of these three methods are convergent, moreover all the three methods work for both short term and long term options. Through comparison with existing popular methods by numerical experiments, our work shows that compact finite difference methods provide an exciting new tool for American option pricing.
Balestrini, Christopher; Campo-Celaya, Tatiana
2016-01-01
Anatomy is the backbone of medical education and new techniques to improve learning are frequently explored. With the introduction of 3D printers specifically for the home market, the price of this technology has reached affordable levels. Using patient scan data, accurate 3D models can be printed that represent real human variation in anatomy to provide an innovative, inexpensive and valuable adjunct to anatomical teaching. Is it now time for every medical school to have their own 3D printer?
Touring Mars Online, Real-time, in 3D for Math and Science Educators and Students
ERIC Educational Resources Information Center
Jones, Greg; Kalinowski, Kevin
2007-01-01
This article discusses a project that placed over 97% of Mars' topography made available from NASA into an interactive 3D multi-user online learning environment beginning in 2003. In 2005 curriculum materials that were created to support middle school math and science education were developed. Research conducted at the University of North Texas…
Real-Time Large Scale 3d Reconstruction by Fusing Kinect and Imu Data
NASA Astrophysics Data System (ADS)
Huai, J.; Zhang, Y.; Yilmaz, A.
2015-08-01
Kinect-style RGB-D cameras have been used to build large scale dense 3D maps for indoor environments. These maps can serve many purposes such as robot navigation, and augmented reality. However, to generate dense 3D maps of large scale environments is still very challenging. In this paper, we present a mapping system for 3D reconstruction that fuses measurements from a Kinect and an inertial measurement unit (IMU) to estimate motion. Our major achievements include: (i) Large scale consistent 3D reconstruction is realized by volume shifting and loop closure; (ii) The coarse-to-fine iterative closest point (ICP) algorithm, the SIFT odometry, and IMU odometry are combined to robustly and precisely estimate pose. In particular, ICP runs routinely to track the Kinect motion. If ICP fails in planar areas, the SIFT odometry provides incremental motion estimate. If both ICP and the SIFT odometry fail, e.g., upon abrupt motion or inadequate features, the incremental motion is estimated by the IMU. Additionally, the IMU also observes the roll and pitch angles which can reduce long-term drift of the sensor assembly. In experiments on a consumer laptop, our system estimates motion at 8Hz on average while integrating color images to the local map and saving volumes of meshes concurrently. Moreover, it is immune to tracking failures, and has smaller drift than the state-of-the-art systems in large scale reconstruction.
Real-time, high-accuracy 3D imaging and shape measurement.
Nguyen, Hieu; Nguyen, Dung; Wang, Zhaoyang; Kieu, Hien; Le, Minh
2015-01-01
In spite of the recent advances in 3D shape measurement and geometry reconstruction, simultaneously achieving fast-speed and high-accuracy performance remains a big challenge in practice. In this paper, a 3D imaging and shape measurement system is presented to tackle such a challenge. The fringe-projection-profilometry-based system employs a number of advanced approaches, such as: composition of phase-shifted fringe patterns, externally triggered synchronization of system components, generalized system setup, ultrafast phase-unwrapping algorithm, flexible system calibration method, robust gamma correction scheme, multithread computation and processing, and graphics-processing-unit-based image display. Experiments have shown that the proposed system can acquire and display high-quality 3D reconstructed images and/or video stream at a speed of 45 frames per second with relative accuracy of 0.04% or at a reduced speed of 22.5 frames per second with enhanced accuracy of 0.01%. The 3D imaging and shape measurement system shows great promise of satisfying the ever-increasing demands of scientific and engineering applications.
Time-resolved fuel injector flow characterisation based on 3D laser Doppler vibrometry
NASA Astrophysics Data System (ADS)
Crua, Cyril; Heikal, Morgan R.
2014-12-01
Hydrodynamic turbulence and cavitation are known to play a significant role in high-pressure atomizers, but the small geometries and extreme operating conditions hinder the understanding of the flow’s characteristics. Diesel internal flow experiments are generally conducted using x-ray techniques or on transparent, and often enlarged, nozzles with different orifice geometries and surface roughness to those found in production injectors. In order to enable investigations of the fuel flow inside unmodified injectors, we have developed a new experimental approach to measure time-resolved vibration spectra of diesel nozzles using a 3D laser vibrometer. The technique we propose is based on the triangulation of the vibrometer and fuel pressure transducer signals, and enables the quantitative characterisation of quasi-cyclic internal flows without requiring modifications to the injector, the working fluid, or limiting the fuel injection pressure. The vibrometer, which uses the Doppler effect to measure the velocity of a vibrating object, was used to scan injector nozzle tips during the injection event. The data were processed using a discrete Fourier transform to provide time-resolved spectra for valve-closed-orifice, minisac and microsac nozzle geometries, and injection pressures ranging from 60 to 160 MPa, hence offering unprecedented insight into cyclic cavitation and internal mechanical dynamic processes. A peak was consistently found in the spectrograms between 6 and 7.5 kHz for all nozzles and injection pressures. Further evidence of a similar spectral peak was obtained from the fuel pressure transducer and a needle lift sensor mounted into the injector body. Evidence of propagation of the nozzle oscillations to the liquid sprays was obtained by recording high-speed videos of the near-nozzle diesel jet, and computing the fast Fourier transform for a number of pixel locations at the interface of the jets. This 6-7.5 kHz frequency peak is proposed to be the
NASA Astrophysics Data System (ADS)
Gutmann, Matthias J.
2017-03-01
A 3D profile function is presented suitable to integrate reflections arising in time-of-flight (TOF) single crystal neutron diffraction experiments. In order to account for the large asymmetry of the peak shape in the TOF direction, a 3D Gaussian ellipsoid in the pixel (x, z) and time-of-flight coordinates is convoluted with a rising and falling exponential along the time-of-flight direction. An analytic expression is derived, making it suitable for least-squares fitting. The application of this function in detector space or reciprocal space is straightforward.
Applications of an exponential finite difference technique
NASA Technical Reports Server (NTRS)
Handschuh, Robert F.; Keith, Theo G., Jr.
1988-01-01
An exponential finite difference scheme first presented by Bhattacharya for one dimensional unsteady heat conduction problems in Cartesian coordinates was extended. The finite difference algorithm developed was used to solve the unsteady diffusion equation in one dimensional cylindrical coordinates and was applied to two and three dimensional conduction problems in Cartesian coordinates. Heat conduction involving variable thermal conductivity was also investigated. The method was used to solve nonlinear partial differential equations in one and two dimensional Cartesian coordinates. Predicted results are compared to exact solutions where available or to results obtained by other numerical methods.
Hosokawa, Atsushi
2015-06-01
Using a finite-difference time-domain method, ultrasound backscattered waves inside cancellous bone were numerically analyzed to investigate the backscatter mechanism. Two bone models with different thicknesses were modeled with artificial absorbing layers positioned at the back surfaces of the model, and an ultrasound pulse wave was transmitted toward the front surface. By calculating the difference between the simulated waveforms obtained using the two bone models, the backscattered waves from a limited range of depths in cancellous bone could be isolated. The results showed that the fast and slow longitudinal waves, which have previously been observed only in the ultrasound waveform transmitted through the bone, could be distinguished in the backscattered waveform from a deeper bone depth when transmitting the ultrasound wave parallel to the main orientation of the trabecular network. The amplitudes of the fast and slow backscattered waves were more closely correlated with the bone porosity [R2 = 0.84 and 0.66 (p < 0.001), respectively] than the amplitude of the whole (nonisolated) backscattered waves [R2 = 0.48 (p < 0.001)]. In conclusion, the nonisolated backscattered waves could be regarded as the superposition of the fast and slow waves reflected from various bone depths, returning at different times.
NASA Technical Reports Server (NTRS)
Kraft, R. E.
1999-01-01
Single-degree-of-freedom resonators consisting of honeycomb cells covered by perforated facesheets are widely used as acoustic noise suppression liners in aircraft engine ducts. The acoustic resistance and mass reactance of such liners are known to vary with the intensity of the sound incident upon the panel. Since the pressure drop across a perforated liner facesheet increases quadratically with the flow velocity through the facesheet, this is known as the nonlinear resistance effect. In the past, two different empirical frequency domain models have been used to predict the Sound Pressure Level effect of the incident wave on the perforated liner impedance, one that uses the incident particle velocity in isolated narrowbands, and one that models the particle velocity as the overall velocity. In the absence of grazing flow, neither frequency domain model is entirely accurate in predicting the nonlinear effect that is measured for typical perforated sheets. The time domain model is developed in an attempt to understand and improve the model for the effect of spectral shape and amplitude of multi-frequency incident sound pressure on the liner impedance. A computer code for the time-domain finite difference model is developed and predictions using the models are compared to current frequency-domain models.
A real-time 3D end-to-end augmented reality system (and its representation transformations)
NASA Astrophysics Data System (ADS)
Tytgat, Donny; Aerts, Maarten; De Busser, Jeroen; Lievens, Sammy; Rondao Alface, Patrice; Macq, Jean-Francois
2016-09-01
The new generation of HMDs coming to the market is expected to enable many new applications that allow free viewpoint experiences with captured video objects. Current applications usually rely on 3D content that is manually created or captured in an offline manner. In contrast, this paper focuses on augmented reality applications that use live captured 3D objects while maintaining free viewpoint interaction. We present a system that allows live dynamic 3D objects (e.g. a person who is talking) to be captured in real-time. Real-time performance is achieved by traversing a number of representation formats and exploiting their specific benefits. For instance, depth images are maintained for fast neighborhood retrieval and occlusion determination, while implicit surfaces are used to facilitate multi-source aggregation for both geometry and texture. The result is a 3D reconstruction system that outputs multi-textured triangle meshes at real-time rates. An end-to-end system is presented that captures and reconstructs live 3D data and allows for this data to be used on a networked (AR) device. For allocating the different functional blocks onto the available physical devices, a number of alternatives are proposed considering the available computational power and bandwidth for each of the components. As we will show, the representation format can play an important role in this functional allocation and allows for a flexible system that can support a highly heterogeneous infrastructure.
Seismic imaging using finite-differences and parallel computers
Ober, C.C.
1997-12-31
A key to reducing the risks and costs of associated with oil and gas exploration is the fast, accurate imaging of complex geologies, such as salt domes in the Gulf of Mexico and overthrust regions in US onshore regions. Prestack depth migration generally yields the most accurate images, and one approach to this is to solve the scalar wave equation using finite differences. As part of an ongoing ACTI project funded by the US Department of Energy, a finite difference, 3-D prestack, depth migration code has been developed. The goal of this work is to demonstrate that massively parallel computers can be used efficiently for seismic imaging, and that sufficient computing power exists (or soon will exist) to make finite difference, prestack, depth migration practical for oil and gas exploration. Several problems had to be addressed to get an efficient code for the Intel Paragon. These include efficient I/O, efficient parallel tridiagonal solves, and high single-node performance. Furthermore, to provide portable code the author has been restricted to the use of high-level programming languages (C and Fortran) and interprocessor communications using MPI. He has been using the SUNMOS operating system, which has affected many of his programming decisions. He will present images created from two verification datasets (the Marmousi Model and the SEG/EAEG 3D Salt Model). Also, he will show recent images from real datasets, and point out locations of improved imaging. Finally, he will discuss areas of current research which will hopefully improve the image quality and reduce computational costs.
Xin, Xuegang; Wang, Di; Han, Jijun; Feng, Yanqiu; Feng, Qianjin; Chen, Wufan
2012-07-01
The numerical optimization of a three-channel radiofrequency (RF) coil with a physical aperture for the open, vertical-field, MR-guided, focused ultrasound surgery (MRgFUS) system using the hybrid method of moment (MoM)/finite difference time domain (FDTD) method is reported. The numerical simulation of the current density distribution on an RF coil with a complicated irregular structure was performed using MoM. The electromagnetic field simulation containing the full coil-tissue interactions within the region of interest was accomplished using the FDTD method. Huygens' equivalent box with six surfaces smoothly connected the MoM and FDTD method. An electromagnetic model of the human pelvic region was reconstructed and loaded in the FDTD zone to optimize the three-channel RF coil and compensate for the lower sensitivity at the vertical field. In addition, the numerical MoM was used to model the resonance, decoupling and impedance matching of the RF coil in compliance with engineering practices. A prototype RF coil was constructed to verify the simulation results. The results demonstrate that the signal-to-noise ratio and the homogeneity of the B(1) field were both greatly improved compared with previously published results.
Real time 3-D electron density reconstruction over Europe by using TaD profiler
NASA Astrophysics Data System (ADS)
Kutiev, I.; Marinov, P.; Belehaki, A.
2016-07-01
The TaD (Topside Sounder Model (TSM)-assisted Digisonde) profiler, developed on the basis of the Topside Sounder Model (TSM), provides vertical electron density profiles (EDP) over Digisondes from the bottomside ionosphere up to Global Navigation Satellite Systems (GNSS) orbit heights. TaD EDP uses the Digisonde bottomside profile and extends it above the F2 layer peak, representing O+ distribution by α-Chapman formula and H+ distribution by a single exponent. Topside scale height HT and transition height hT are taken from TSM, while the plasmasphere scale height Hp is defined as a function of HT. All profile parameters are adjusted to the current conditions comparing the profile integral with the GNSS vertical total electron content (TEC) retrieved from the European Reference Frame (EUREF) maps. To expand to three dimensions (3-D), European maps of foF2 and hmF2 are produced, based on Digisonde data, with spatial resolution 1°×1° in latitude and longitude, and TaD profiles are calculated at each grid node. Electron density (ED) at any point of the 3-D space is obtained by linear interpolation of TaD parameters between neighbor nodes. Samples of two dimensional (2-D) electron density distribution (EDD) at different cross sections of the 3-D space between 200 km and 1150 km over the mapping area are presented, along with distributions of the electron density along various raypaths of GNSS signals. The modeled 3-D EDD is compared with vertical (vTEC) and slant (sTEC) TEC parameters calculated from individual GNSS receivers. The model error (relative deviation of model from the data), based on 6780 data values, is 10% for sTEC and 6% for vTEC.
Real-time forecasting of Hong Kong beach water quality by 3D deterministic model.
Chan, S N; Thoe, W; Lee, J H W
2013-03-15
Bacterial level (e.g. Escherichia coli) is generally adopted as the key indicator of beach water quality due to its high correlation with swimming associated illnesses. A 3D deterministic hydrodynamic model is developed to provide daily water quality forecasting for eight marine beaches in Tsuen Wan, which are only about 8 km from the Harbour Area Treatment Scheme (HATS) outfall discharging 1.4 million m(3)/d of partially-treated sewage. The fate and transport of the HATS effluent and its impact on the E. coli level at nearby beaches are studied. The model features the seamless coupling of near field jet mixing and the far field transport and dispersion of wastewater discharge from submarine outfalls, and a spatial-temporal dependent E. coli decay rate formulation specifically developed for sub-tropical Hong Kong waters. The model prediction of beach water quality has been extensively validated against field data both before and after disinfection of the HATS effluent. Compared with daily beach E. coli data during August-November 2011, the model achieves an overall accuracy of 81-91% in forecasting compliance/exceedance of beach water quality standard. The 3D deterministic model has been most valuable in the interpretation of the complex variation of beach water quality which depends on tidal level, solar radiation and other hydro-meteorological factors. The model can also be used in optimization of disinfection dosage and in emergency response situations.
Yang, Samuel J; Allen, William E; Kauvar, Isaac; Andalman, Aaron S; Young, Noah P; Kim, Christina K; Marshel, James H; Wetzstein, Gordon; Deisseroth, Karl
2015-12-14
Phase spatial light modulators (SLMs) are widely used for generating multifocal three-dimensional (3D) illumination patterns, but these are limited to a field of view constrained by the pixel count or size of the SLM. Further, with two-photon SLM-based excitation, increasing the number of focal spots penalizes the total signal linearly--requiring more laser power than is available or can be tolerated by the sample. Here we analyze and demonstrate a method of using galvanometer mirrors to time-sequentially reposition multiple 3D holograms, both extending the field of view and increasing the total time-averaged two-photon signal. We apply our approach to 3D two-photon in vivo neuronal calcium imaging.
Yang, Samuel J.; Allen, William E.; Kauvar, Isaac; Andalman, Aaron S.; Young, Noah P.; Kim, Christina K.; Marshel, James H.; Wetzstein, Gordon; Deisseroth, Karl
2016-01-01
Phase spatial light modulators (SLMs) are widely used for generating multifocal three-dimensional (3D) illumination patterns, but these are limited to a field of view constrained by the pixel count or size of the SLM. Further, with two-photon SLM-based excitation, increasing the number of focal spots penalizes the total signal linearly—requiring more laser power than is available or can be tolerated by the sample. Here we analyze and demonstrate a method of using galvanometer mirrors to time-sequentially reposition multiple 3D holograms, both extending the field of view and increasing the total time-averaged two-photon signal. We apply our approach to 3D two-photon in vivo neuronal calcium imaging. PMID:26699047
Finite difference computation of Casimir forces
NASA Astrophysics Data System (ADS)
Pinto, Fabrizio
2016-09-01
In this Invited paper, we begin by a historical introduction to provide a motivation for the classical problems of interatomic force computation and associated challenges. This analysis will lead us from early theoretical and experimental accomplishments to the integration of these fascinating interactions into the operation of realistic, next-generation micro- and nanodevices both for the advanced metrology of fundamental physical processes and in breakthrough industrial applications. Among several powerful strategies enabling vastly enhanced performance and entirely novel technological capabilities, we shall specifically consider Casimir force time-modulation and the adoption of non-trivial geometries. As to the former, the ability to alter the magnitude and sign of the Casimir force will be recognized as a crucial principle to implement thermodynamical nano-engines. As to the latter, we shall first briefly review various reported computational approaches. We shall then discuss the game-changing discovery, in the last decade, that standard methods of numerical classical electromagnetism can be retooled to formulate the problem of Casimir force computation in arbitrary geometries. This remarkable development will be practically illustrated by showing that such an apparently elementary method as standard finite-differencing can be successfully employed to numerically recover results known from the Lifshitz theory of dispersion forces in the case of interacting parallel-plane slabs. Other geometries will be also be explored and consideration given to the potential of non-standard finite-difference methods. Finally, we shall introduce problems at the computational frontier, such as those including membranes deformed by Casimir forces and the effects of anisotropic materials. Conclusions will highlight the dramatic transition from the enduring perception of this field as an exotic application of quantum electrodynamics to the recent demonstration of a human climbing
Romero, Javier M; Madan, Neil; Betancur, Ilda; Ciobanu, Adrian; Murphy, Erin; McCullough, Danielle; Grant, P Ellen
2014-08-01
The purpose of this study was to compare acquisition time efficiency and diagnostic agreement of neonatal brain ultrasound (US) scans obtained with a 3-D volume US acquisition protocol and the conventional 2-D acquisition protocol. Ninety-one consecutive premature neonatal brain ultrasound scans were prospectively performed on 59 neonates with the conventional 2-D acquisition protocol. Immediately after the 2-D study, a coronal 3-D ultrasound volume was acquired and later reconstructed into axial and sagittal planes. All 59 neonates were imaged in the neonatal intensive care unit to rule out intracranial hemorrhage. Total time for 2-D and 3-D acquisition protocols was recorded, and a two-tailed t-test was used to determine if study durations differed significantly. One pediatric neuroradiologist reviewed the reformatted 3-D images, tomographic ultrasound images. Results were compared with the clinical interpretation of the 2-D conventional study. The mean scanning time for the 2-D US acquisition protocol was 10.56 min (standard deviation [SD] = 7.11), and that for the 3-D volume US acquisition protocol was 1.48 min (SD = 0.59) (p ≤ 0.001). Inter-observer agreement revealed k values of 0.84 for hydrocephalus, 0.80 for germinal matrix hemorrhage/intraventricular hemorrhage, 0.74 for periventricular leukomalacia and 0.91 for subdural collection, hence near-perfect to substantial agreement between imaging protocols. There was a significant decrease in acquisition time for the 3-D volume ultrasound acquisition protocol compared with the conventional 2-D US protocol (p = <0.001), without compromising the diagnostic quality compared with a conventional 2-D US imaging protocol.
NASA Astrophysics Data System (ADS)
Li, Boren; Wu, Jianping; Pan, Mao; Huang, Jing
2015-06-01
In hazard management, earthquake researchers have utilized GIS to ease the process of managing disasters. Researchers use WebGIS to assess hazards and seismic risk. Although they can provide a visual analysis platform based on GIS technology, they lack a general description in the extensibility of WebGIS for processing dynamic data, especially real-time data. In this paper, we propose a novel approach for real-time 3D visual earthquake information publishing model based on WebGIS and digital globe to improve the ability of processing real-time data in systems based on WebGIS. On the basis of the model, we implement a real-time 3D earthquake information publishing system—EqMap3D. The system can not only publish real-time earthquake information but also display these data and their background geoscience information in a 3D scene. It provides a powerful tool for display, analysis, and decision-making for researchers and administrators. It also facilitates better communication between researchers engaged in geosciences and the interested public.
NASA Astrophysics Data System (ADS)
Robuchon, G.; Choblet, G.; Sotin, C.; Tobie, G.
2007-08-01
The Cassini spacecraft has observed Iapetus and found two spectacular characteristics. First, the equatorial radius is about 35 km larger than the polar radius, which suggests an equilibrium shape with a 16 hours rotation period whereas the present day rotation is synchronous (79 days). Second, a mountain range about 18 km high, is perfectly aligned with the equator. In order to explain these two striking observations, Castillo et al. (2007) proposes that Iapetus froze its shape as it de-span from a rapid orbital rate of a few hours to the present synchronous rotation. Such a despinning is possible if an additional heat component was present during its early history, including short-lived radiogenic elements such as 26Al, and if heat transfer is inefficient to cool down the interior ( i.e. if no thermal convection starts as the satellite heat up). In this context, we performed numerical simulations of thermal convection for fluids with large viscosity contrasts in 2-D cartesian and 3-D spherical geometries, using a 3-D code named OEDIPUS (Choblet, 2005). Comparisons between 2-D and 3-D simulations allow to constrain the onset time of convection and the cooling rate of the satellite interior during the early stage. In the 3D case, gravity is depth dependent. The results emphasize the importance of taking into account not only the 3D nature of the convection pattern but also the satellite curvature . A first result is that the onset time is shorter in 3D spherical geometry than in 2D Cartesian. When convection initiates, a large number of plumes form due to the large value of the Rayleigh number and the small thickness of the thermal boundary layer. Our results suggest that convection starts if the ice viscosity gets lower than 1016 Pa.s, which corresponds to a temperature of 250 K for pure H2O ice. It puts limits on the time of formation of Iapetus after the formation of CAIs.
Li, Ruijiang; Fahimian, Benjamin P.; Xing, Lei
2011-07-15
Purpose: Monoscopic x-ray imaging with on-board kV devices is an attractive approach for real-time image guidance in modern radiation therapy such as VMAT or IMRT, but it falls short in providing reliable information along the direction of imaging x-ray. By effectively taking consideration of projection data at prior times and/or angles through a Bayesian formalism, the authors develop an algorithm for real-time and full 3D tumor localization with a single x-ray imager during treatment delivery. Methods: First, a prior probability density function is constructed using the 2D tumor locations on the projection images acquired during patient setup. Whenever an x-ray image is acquired during the treatment delivery, the corresponding 2D tumor location on the imager is used to update the likelihood function. The unresolved third dimension is obtained by maximizing the posterior probability distribution. The algorithm can also be used in a retrospective fashion when all the projection images during the treatment delivery are used for 3D localization purposes. The algorithm does not involve complex optimization of any model parameter and therefore can be used in a ''plug-and-play'' fashion. The authors validated the algorithm using (1) simulated 3D linear and elliptic motion and (2) 3D tumor motion trajectories of a lung and a pancreas patient reproduced by a physical phantom. Continuous kV images were acquired over a full gantry rotation with the Varian TrueBeam on-board imaging system. Three scenarios were considered: fluoroscopic setup, cone beam CT setup, and retrospective analysis. Results: For the simulation study, the RMS 3D localization error is 1.2 and 2.4 mm for the linear and elliptic motions, respectively. For the phantom experiments, the 3D localization error is < 1 mm on average and < 1.5 mm at 95th percentile in the lung and pancreas cases for all three scenarios. The difference in 3D localization error for different scenarios is small and is not
Accuracy of real-time single- and multi-beat 3-d speckle tracking echocardiography in vitro.
Hjertaas, Johannes Just; Fosså, Henrik; Dybdahl, Grete Lunestad; Grüner, Renate; Lunde, Per; Matre, Knut
2013-06-01
With little data published on the accuracy of cardiac 3-D strain measurements, we investigated the agreement between 3-D echocardiography and sonomicrometry in an in vitro model with a polyvinyl alcohol phantom. A cardiac scanner with a 3-D probe was used to acquire recordings at 15 different stroke volumes at a heart rate of 60 beats/min, and eight different stroke volumes at a heart rate of 120 beats/min. Sonomicrometry was used as a reference, monitoring longitudinal, circumferential and radial lengths. Both single- and multi-beat acquisitions were recorded. Strain values were compared with sonomicrometer strain using linear correlation coefficients and Bland-Altman analysis. Multi-beat acquisition showed good agreement, whereas real-time images showed less agreement. The best correlation was obtained for a heart rate 60 of beats/min at a volume rate 36.6 volumes/s.
NASA Astrophysics Data System (ADS)
Bustamante, Miguel D.
2011-06-01
We prove by an explicit construction that solutions to incompressible 3D Euler equations defined in the periodic cube Ω=[0 can be mapped bijectively to a new system of equations whose solutions are globally regular. We establish that the usual Beale-Kato-Majda criterion for finite-time singularity (or blowup) of a solution to the 3D Euler system is equivalent to a condition on the corresponding regular solution of the new system. In the hypothetical case of Euler finite-time singularity, we provide an explicit formula for the blowup time in terms of the regular solution of the new system. The new system is amenable to being integrated numerically using similar methods as in Euler equations. We propose a method to simulate numerically the new regular system and describe how to use this to draw robust and reliable conclusions on the finite-time singularity problem of Euler equations, based on the conservation of quantities directly related to energy and circulation. The method of mapping to a regular system can be extended to any fluid equation that admits a Beale-Kato-Majda type of theorem, e.g. 3D Navier-Stokes, 2D and 3D magnetohydrodynamics, and 1D inviscid Burgers. We discuss briefly the case of 2D ideal magnetohydrodynamics. In order to illustrate the usefulness of the mapping, we provide a thorough comparison of the analytical solution versus the numerical solution in the case of 1D inviscid Burgers equation.
Real-time 3D imaging of microstructure growth in battery cells using indirect MRI
Ilott, Andrew J.; Mohammadi, Mohaddese; Chang, Hee Jung; Grey, Clare P.; Jerschow, Alexej
2016-01-01
Lithium metal is a promising anode material for Li-ion batteries due to its high theoretical specific capacity and low potential. The growth of dendrites is a major barrier to the development of high capacity, rechargeable Li batteries with lithium metal anodes, and hence, significant efforts have been undertaken to develop new electrolytes and separator materials that can prevent this process or promote smooth deposits at the anode. Central to these goals, and to the task of understanding the conditions that initiate and propagate dendrite growth, is the development of analytical and nondestructive techniques that can be applied in situ to functioning batteries. MRI has recently been demonstrated to provide noninvasive imaging methodology that can detect and localize microstructure buildup. However, until now, monitoring dendrite growth by MRI has been limited to observing the relatively insensitive metal nucleus directly, thus restricting the temporal and spatial resolution and requiring special hardware and acquisition modes. Here, we present an alternative approach to detect a broad class of metallic dendrite growth via the dendrites’ indirect effects on the surrounding electrolyte, allowing for the application of fast 3D 1H MRI experiments with high resolution. We use these experiments to reconstruct 3D images of growing Li dendrites from MRI, revealing details about the growth rate and fractal behavior. Radiofrequency and static magnetic field calculations are used alongside the images to quantify the amount of the growing structures. PMID:27621444
Assessment of anterior cruciate ligament reconstruction using 3D ultrashort echo-time MR imaging.
Rahmer, Jürgen; Börnert, Peter; Dries, Sebastian P M
2009-02-01
This work demonstrates the potential of ultrashort TE (UTE) imaging for visualizing graft material and fixation elements after surgical repair of soft tissue trauma such as ligament or meniscal injury. Three asymptomatic patients with anterior cruciate ligament (ACL) reconstruction using different graft fixation methods were imaged at 1.5T using a 3D UTE sequence. Conventional multislice turbo spin-echo (TSE) measurements were performed for comparison. 3D UTE imaging yields high signal from tendon graft material at isotropic spatial resolution, thus facilitating direct positive contrast graft visualization. Furthermore, metal and biopolymer graft fixation elements are clearly depicted due to the high contrast between the signal-void implants and the graft material. Thus, the ability of UTE MRI to visualize short-T(2) tissues such as tendons, ligaments, or tendon grafts can provide additional information about the status of the graft and its fixation in the situation after cruciate ligament repair. UTE MRI can therefore potentially support diagnosis when problems occur or persist after surgical procedures involving short-T(2) tissues and implants.
NASA Astrophysics Data System (ADS)
Carlsohn, Matthias F.; Kemmling, André; Petersen, Arne; Wietzke, Lennart
2016-04-01
Cerebral aneurysms require endovascular treatment to eliminate potentially lethal hemorrhagic rupture by hemostasis of blood flow within the aneurysm. Devices (e.g. coils and flow diverters) promote homeostasis, however, measurement of blood flow within an aneurysm or cerebral vessel before and after device placement on a microscopic level has not been possible so far. This would allow better individualized treatment planning and improve manufacture design of devices. For experimental analysis, direct measurement of real-time microscopic cerebrovascular flow in micro-structures may be an alternative to computed flow simulations. An application of microscopic aneurysm flow measurement on a regular basis to empirically assess a high number of different anatomic shapes and the corresponding effect of different devices would require a fast and reliable method at low cost with high throughout assessment. Transparent three dimensional 3D models of brain vessels and aneurysms may be used for microscopic flow measurements by particle image velocimetry (PIV), however, up to now the size of structures has set the limits for conventional 3D-imaging camera set-ups. On line flow assessment requires additional computational power to cope with the processing large amounts of data generated by sequences of multi-view stereo images, e.g. generated by a light field camera capturing the 3D information by plenoptic imaging of complex flow processes. Recently, a fast and low cost workflow for producing patient specific three dimensional models of cerebral arteries has been established by stereo-lithographic (SLA) 3D printing. These 3D arterial models are transparent an exhibit a replication precision within a submillimeter range required for accurate flow measurements under physiological conditions. We therefore test the feasibility of microscopic flow measurements by PIV analysis using a plenoptic camera system capturing light field image sequences. Averaging across a sequence of
Bogner, Wolfgang; Gagoski, Borjan; Hess, Aaron T; Bhat, Himanshu; Tisdall, M Dylan; van der Kouwe, Andre J W; Strasser, Bernhard; Marjańska, Małgorzata; Trattnig, Siegfried; Grant, Ellen; Rosen, Bruce; Andronesi, Ovidiu C
2014-12-01
Gamma-aminobutyric acid (GABA) and glutamate (Glu) are the major neurotransmitters in the brain. They are crucial for the functioning of healthy brain and their alteration is a major mechanism in the pathophysiology of many neuro-psychiatric disorders. Magnetic resonance spectroscopy (MRS) is the only way to measure GABA and Glu non-invasively in vivo. GABA detection is particularly challenging and requires special MRS techniques. The most popular is MEscher-GArwood (MEGA) difference editing with single-voxel Point RESolved Spectroscopy (PRESS) localization. This technique has three major limitations: a) MEGA editing is a subtraction technique, hence is very sensitive to scanner instabilities and motion artifacts. b) PRESS is prone to localization errors at high fields (≥3T) that compromise accurate quantification. c) Single-voxel spectroscopy can (similar to a biopsy) only probe steady GABA and Glu levels in a single location at a time. To mitigate these problems, we implemented a 3D MEGA-editing MRS imaging sequence with the following three features: a) Real-time motion correction, dynamic shim updates, and selective reacquisition to eliminate subtraction artifacts due to scanner instabilities and subject motion. b) Localization by Adiabatic SElective Refocusing (LASER) to improve the localization accuracy and signal-to-noise ratio. c) K-space encoding via a weighted stack of spirals provides 3D metabolic mapping with flexible scan times. Simulations, phantom and in vivo experiments prove that our MEGA-LASER sequence enables 3D mapping of GABA+ and Glx (Glutamate+Gluatmine), by providing 1.66 times larger signal for the 3.02ppm multiplet of GABA+ compared to MEGA-PRESS, leading to clinically feasible scan times for 3D brain imaging. Hence, our sequence allows accurate and robust 3D-mapping of brain GABA+ and Glx levels to be performed at clinical 3T MR scanners for use in neuroscience and clinical applications.
Finite-difference migration to zero offset
Li, Jianchao.
1992-01-01
Migration to zero offset (MZO), also called dip moveout (DMO) or prestack partial migration, transforms prestack offset seismic data into approximate zero-offset data so as to remove reflection point smear and obtain quality stacked results over a range of reflector dips. MZO has become an important step in standard seismic data processing, and a variety of frequency-wavenumber (f-k) and integral MZO algorithms have been used in practice to date. Here, I present a finite-difference MZO algorithm applied to normal-moveout (NMO)-corrected, common-offset sections. This algorithm employs a traditional poststack 15-degree finite-difference migration algorithm and a special velocity function rather than the true migration velocity. This paper shows results of implementation of this MZO algorithm when velocity varies with depth, and discusses the possibility of applying this algorithm to cases where velocity varies with both depth and horizontal distance.
Finite-difference migration to zero offset
Li, Jianchao
1992-07-01
Migration to zero offset (MZO), also called dip moveout (DMO) or prestack partial migration, transforms prestack offset seismic data into approximate zero-offset data so as to remove reflection point smear and obtain quality stacked results over a range of reflector dips. MZO has become an important step in standard seismic data processing, and a variety of frequency-wavenumber (f-k) and integral MZO algorithms have been used in practice to date. Here, I present a finite-difference MZO algorithm applied to normal-moveout (NMO)-corrected, common-offset sections. This algorithm employs a traditional poststack 15-degree finite-difference migration algorithm and a special velocity function rather than the true migration velocity. This paper shows results of implementation of this MZO algorithm when velocity varies with depth, and discusses the possibility of applying this algorithm to cases where velocity varies with both depth and horizontal distance.
Second Order Accurate Finite Difference Methods
1984-08-20
a study of the idealized material has direct applications to some polymer structures (4, 5). Wave propagation studies in hyperelastic materials have...34Acceleration Wave Propagation in Hyperelastic Rods of Variable Cross- section. Wave Motion, V4, pp. 173-180, 1982. 9. M. Hirao and N. Sugimoto...Waves in Hyperelastic Road," Quart. Appl. Math., V37, pp. 377-399, 1979. 11. G. A. Sod. "A Survey of Several Finite Difference Methods for Systems of
Toward real-time endoscopically-guided robotic navigation based on a 3D virtual surgical field model
NASA Astrophysics Data System (ADS)
Gong, Yuanzheng; Hu, Danying; Hannaford, Blake; Seibel, Eric J.
2015-03-01
The challenge is to accurately guide the surgical tool within the three-dimensional (3D) surgical field for roboticallyassisted operations such as tumor margin removal from a debulked brain tumor cavity. The proposed technique is 3D image-guided surgical navigation based on matching intraoperative video frames to a 3D virtual model of the surgical field. A small laser-scanning endoscopic camera was attached to a mock minimally-invasive surgical tool that was manipulated toward a region of interest (residual tumor) within a phantom of a debulked brain tumor. Video frames from the endoscope provided features that were matched to the 3D virtual model, which were reconstructed earlier by raster scanning over the surgical field. Camera pose (position and orientation) is recovered by implementing a constrained bundle adjustment algorithm. Navigational error during the approach to fluorescence target (residual tumor) is determined by comparing the calculated camera pose to the measured camera pose using a micro-positioning stage. From these preliminary results, computation efficiency of the algorithm in MATLAB code is near real-time (2.5 sec for each estimation of pose), which can be improved by implementation in C++. Error analysis produced 3-mm distance error and 2.5 degree of orientation error on average. The sources of these errors come from 1) inaccuracy of the 3D virtual model, generated on a calibrated RAVEN robotic platform with stereo tracking; 2) inaccuracy of endoscope intrinsic parameters, such as focal length; and 3) any endoscopic image distortion from scanning irregularities. This work demonstrates feasibility of micro-camera 3D guidance of a robotic surgical tool.
Passive markers for tracking surgical instruments in real-time 3-D ultrasound imaging.
Stoll, Jeffrey; Ren, Hongliang; Dupont, Pierre E
2012-03-01
A family of passive echogenic markers is presented by which the position and orientation of a surgical instrument can be determined in a 3-D ultrasound volume, using simple image processing. Markers are attached near the distal end of the instrument so that they appear in the ultrasound volume along with the instrument tip. They are detected and measured within the ultrasound image, thus requiring no external tracking device. This approach facilitates imaging instruments and tissue simultaneously in ultrasound-guided interventions. Marker-based estimates of instrument pose can be used in augmented reality displays or for image-based servoing. Design principles for marker shapes are presented that ensure imaging system and measurement uniqueness constraints are met. An error analysis is included that can be used to guide marker design and which also establishes a lower bound on measurement uncertainty. Finally, examples of marker measurement and tracking algorithms are presented along with experimental validation of the concepts.
Feasibility of modulation-encoded TOBE CMUTS for real-time 3-D imaging.
Chee, Ryan K W; Zemp, Roger J
2015-04-01
Modulation-encoded top orthogonal to bottom electrode (TOBE) capacitive micromachined ultrasound transducers (CMUTs) are proposed 2-D ultrasound transducer arrays that could allow 3-D images to be acquired in a single acquisition using only N channels for an N × N array. In the proposed modulation-encoding scheme, columns are not only biased, but also modulated with a different frequency for each column. The modulation frequencies are higher than the passband of the CMUT membranes and mix nonlinearly in CMUT cells with acoustic signals to produce acoustic signal sidebands around the modulation carriers in the frequency domain. Thus, signals from elements along a row may be read out simultaneously via frequency-domain multiplexing. We present the theory and feasibility data behind modulation-encoded TOBE CMUTs. We also present experiments showing necessary modifications to the current TOBE design that would allow for crosstalk-mitigated modulation-encoding.
NASA Astrophysics Data System (ADS)
Nayak, A. M.; Lindquist, K.; Kilb, D.; Newman, R.; Vernon, F.; Leigh, J.; Johnson, A.; Renambot, L.
2003-12-01
The study of time-dependent, three-dimensional natural phenomena like earthquakes can be enhanced with innovative and pertinent 3D computer graphics. Here we display seismic data as 3D glyphs (graphics primitives or symbols with various geometric and color attributes), allowing us to visualize the measured, time-dependent, 3D wave field from an earthquake recorded by a certain seismic network. In addition to providing a powerful state-of-health diagnostic of the seismic network, the graphical result presents an intuitive understanding of the real-time wave field that is hard to achieve with traditional 2D visualization methods. We have named these 3D icons `seismoglyphs' to suggest visual objects built from three components of ground motion data (north-south, east-west, vertical) recorded by a seismic sensor. A seismoglyph changes color with time, spanning the spectrum, to indicate when the seismic amplitude is largest. The spatial extent of the glyph indicates the polarization of the wave field as it arrives at the recording station. We compose seismoglyphs using the real time ANZA broadband data (http://www.eqinfo.ucsd.edu) to understand the 3D behavior of a seismic wave field in Southern California. Fifteen seismoglyphs are drawn simultaneously with a 3D topography map of Southern California, as real time data is piped into the graphics software using the Antelope system. At each station location, the seismoglyph evolves with time and this graphical display allows a scientist to observe patterns and anomalies in the data. The display also provides visual clues to indicate wave arrivals and ~real-time earthquake detection. Future work will involve adding phase detections, network triggers and near real-time 2D surface shaking estimates. The visuals can be displayed in an immersive environment using the passive stereoscopic Geowall (http://www.geowall.org). The stereographic projection allows for a better understanding of attenuation due to distance and earth
NASA Astrophysics Data System (ADS)
Shestopalov, V.; Bondarenko, Y.; Zayonts, I.; Rudenko, Y.
Introduction After the Chernobyl Nuclear Power Plant (CNPP) disaster (04.26.1986) a huge amount (over 2000 sq. km) of nuclear wastes appeared within so-called "Cher- nobyl Exclusion Zone" (CEZ). At present there are not enough storage facilities in the Ukraine for safe disposal of nuclear wastes and hazardous chemical wastes. The urgent problem now is safe isolation of these dangerous wastes. According to the developed state program of radioactive waste management, the construction of a na- tional storage facility of nuclear wastes is planned. It is also possible to create regional storage facilities for hazardous chemical wastes. The region of our exploration cov- ers the eastern part of the Korosten Plutone and its slope, reaching the CNPP. 3D Space-Time Surface Imaging of Geophysical Fields. There are only three direct meth- ods of stress field reconstruction in present practice, namely the field investigations based on the large-scale fracturing tests, petrotectonic and optical polarization meth- ods. Unfortunately, all these methods are extremely laborious and need the regular field tests, which is difficult to conduct in the areas of anisotropic rock outcrops. A compilation of magnetic and gravity data covering the CNPP area was carried out as a prelude to an interpretation study. More than thirty map products were generated from magnetic, gravity and geodesy data to prepare the 3D Space-Time Surface Images (3D STSI). Multi-layer topography and geophysic surfaces included: total magnetic intensity, isostatically-corrected Bouguer gravity, aspect and slope, first and second derivatives, vertical and horizontal curvature, histogram characteristics and space cor- relation coefficients between the gradient fields. Many maps shows the first and sec- ond derivatives of the potential fields, with the results of lineament (edge) structure detection superimposed. The lineament or edges of the potential fields are located from maximal gradient in many directions
NASA Astrophysics Data System (ADS)
Martin-Rojas, Ivan; Alfaro, Pedro; Estévez, Antonio
2014-05-01
We present a study that encompasses several software tools (iGIS©, ArcGIS©, Autocad©, etc.) and data (geological mapping, high resolution digital topographic data, high resolution aerial photographs, etc.) to create a detailed 3D geometric model of an active fault propagation growth fold. This 3D model clearly shows structural features of the analysed fold, as well as growth relationships and sedimentary patterns. The results obtained permit us to discuss the kinematics and structural evolution of the fold and the fault in time and space. The study fault propagation fold is the Crevillente syncline. This fold represents the northern limit of the Bajo Segura Basin, an intermontane basin in the Eastern Betic Cordillera (SE Spain) developed from upper Miocene on. 3D features of the Crevillente syncline, including growth pattern, indicate that limb rotation and, consequently, fault activity was higher during Messinian than during Tortonian; consequently, fault activity was also higher. From Pliocene on our data point that limb rotation and fault activity steadies or probably decreases. This in time evolution of the Crevillente syncline is not the same all along the structure; actually the 3D geometric model indicates that observed lateral heterogeneity is related to along strike variation of fault displacement.
A Lyapunov-Based Approach for Time-Coordinated 3D Path-Following of Multiple Quadrotors
2012-12-01
based on neural networks, is introduced in [9] to achieve vertical take-off and landing. Integral sliding mode and reinforcement learning control are...Multi-agent quadrotor testbed control design: integral sliding mode vs reinforcement learning,” in International Conference on Intelligent Robots and...the Time-Coordinated 3D Path-Following task for multiple quadrotor UAVs in the presence of time- varying communication networks and spatial and temporal
Low-cost real-time 3D PC distributed-interactive-simulation (DIS) application for C4I
NASA Astrophysics Data System (ADS)
Gonthier, David L.; Veron, Harry
1998-04-01
A 3D Distributed Interactive Simulation (DIS) application was developed and demonstrated in a PC environment. The application is capable of running in the stealth mode or as a player which includes battlefield simulations, such as ModSAF. PCs can be clustered together, but not necessarily collocated, to run a simulation or training exercise on their own. A 3D perspective view of the battlefield is displayed that includes terrain, trees, buildings and other objects supported by the DIS application. Screen update rates of 15 to 20 frames per second have been achieved with fully lit and textured scenes thus providing high quality and fast graphics. A complete PC system can be configured for under $2,500. The software runs under Windows95 and WindowsNT. It is written in C++ and uses a commercial API called RenderWare for 3D rendering. The software uses Microsoft Foundation classes and Microsoft DirectPlay for joystick input. The RenderWare libraries enhance the performance through optimization for MMX and the Pentium Pro processor. The RenderWare and the Righteous 3D graphics board from Orchid Technologies with an advertised rendering rate of up to 2 million texture mapped triangles per second. A low-cost PC DIS simulator that can partake in a real-time collaborative simulation with other platforms is thus achieved.
A spheroid toxicity assay using magnetic 3D bioprinting and real-time mobile device-based imaging
Tseng, Hubert; Gage, Jacob A.; Shen, Tsaiwei; Haisler, William L.; Neeley, Shane K.; Shiao, Sue; Chen, Jianbo; Desai, Pujan K.; Liao, Angela; Hebel, Chris; Raphael, Robert M.; Becker, Jeanne L.; Souza, Glauco R.
2015-01-01
An ongoing challenge in biomedical research is the search for simple, yet robust assays using 3D cell cultures for toxicity screening. This study addresses that challenge with a novel spheroid assay, wherein spheroids, formed by magnetic 3D bioprinting, contract immediately as cells rearrange and compact the spheroid in relation to viability and cytoskeletal organization. Thus, spheroid size can be used as a simple metric for toxicity. The goal of this study was to validate spheroid contraction as a cytotoxic endpoint using 3T3 fibroblasts in response to 5 toxic compounds (all-trans retinoic acid, dexamethasone, doxorubicin, 5′-fluorouracil, forskolin), sodium dodecyl sulfate (+control), and penicillin-G (−control). Real-time imaging was performed with a mobile device to increase throughput and efficiency. All compounds but penicillin-G significantly slowed contraction in a dose-dependent manner (Z’ = 0.88). Cells in 3D were more resistant to toxicity than cells in 2D, whose toxicity was measured by the MTT assay. Fluorescent staining and gene expression profiling of spheroids confirmed these findings. The results of this study validate spheroid contraction within this assay as an easy, biologically relevant endpoint for high-throughput compound screening in representative 3D environments. PMID:26365200
Real-time 3D motion tracking for small animal brain PET
NASA Astrophysics Data System (ADS)
Kyme, A. Z.; Zhou, V. W.; Meikle, S. R.; Fulton, R. R.
2008-05-01
High-resolution positron emission tomography (PET) imaging of conscious, unrestrained laboratory animals presents many challenges. Some form of motion correction will normally be necessary to avoid motion artefacts in the reconstruction. The aim of the current work was to develop and evaluate a motion tracking system potentially suitable for use in small animal PET. This system is based on the commercially available stereo-optical MicronTracker S60 which we have integrated with a Siemens Focus-220 microPET scanner. We present measured performance limits of the tracker and the technical details of our implementation, including calibration and synchronization of the system. A phantom study demonstrating motion tracking and correction was also performed. The system can be calibrated with sub-millimetre accuracy, and small lightweight markers can be constructed to provide accurate 3D motion data. A marked reduction in motion artefacts was demonstrated in the phantom study. The techniques and results described here represent a step towards a practical method for rigid-body motion correction in small animal PET. There is scope to achieve further improvements in the accuracy of synchronization and pose measurements in future work.
Real Time Gabor-Domain Optical Coherence Microscopy for 3D Imaging.
Rolland, Jannick P; Canavesi, Cristina; Tankam, Patrice; Cogliati, Andrea; Lanis, Mara; Santhanam, Anand P
2016-01-01
Fast, robust, nondestructive 3D imaging is needed for the characterization of microscopic tissue structures across various clinical applications. A custom microelectromechanical system (MEMS)-based 2D scanner was developed to achieve, together with a multi-level GPU architecture, 55 kHz fast-axis A-scan acquisition in a Gabor-domain optical coherence microscopy (GD-OCM) custom instrument. GD-OCM yields high-definition micrometer-class volumetric images. A dynamic depth of focusing capability through a bio-inspired liquid lens-based microscope design, as in whales' eyes, was developed to enable the high definition instrument throughout a large field of view of 1 mm3 volume of imaging. Developing this technology is prime to enable integration within the workflow of clinical environments. Imaging at an invariant resolution of 2 μm has been achieved throughout a volume of 1 × 1 × 0.6 mm3, acquired in less than 2 minutes. Volumetric scans of human skin in vivo and an excised human cornea are presented.
Selecting step sizes in sensitivity analysis by finite differences
NASA Technical Reports Server (NTRS)
Iott, J.; Haftka, R. T.; Adelman, H. M.
1985-01-01
This paper deals with methods for obtaining near-optimum step sizes for finite difference approximations to first derivatives with particular application to sensitivity analysis. A technique denoted the finite difference (FD) algorithm, previously described in the literature and applicable to one derivative at a time, is extended to the calculation of several simultaneously. Both the original and extended FD algorithms are applied to sensitivity analysis for a data-fitting problem in which derivatives of the coefficients of an interpolation polynomial are calculated with respect to uncertainties in the data. The methods are also applied to sensitivity analysis of the structural response of a finite-element-modeled swept wing. In a previous study, this sensitivity analysis of the swept wing required a time-consuming trial-and-error effort to obtain a suitable step size, but it proved to be a routine application for the extended FD algorithm herein.
Numerical computation of transonic flows by finite-element and finite-difference methods
NASA Technical Reports Server (NTRS)
Hafez, M. M.; Wellford, L. C.; Merkle, C. L.; Murman, E. M.
1978-01-01
Studies on applications of the finite element approach to transonic flow calculations are reported. Different discretization techniques of the differential equations and boundary conditions are compared. Finite element analogs of Murman's mixed type finite difference operators for small disturbance formulations were constructed and the time dependent approach (using finite differences in time and finite elements in space) was examined.
TIME3D-IGGCAS: A New Three-Dimension Theoretical Ionospheric Model in realistic geomagnetic fields
NASA Astrophysics Data System (ADS)
Ren, Zhipeng; Liu, Libo; Huijun Le, lake709.; Wan, Weixing
Based on the previous work, a new global three-dimension theoretical ionospheric model in realistic geomagnetic fields is developed, named Three-Dimension Theoretical Ionospheric Model of the Earth in the Institute of Geology and Geophysics, Chinese Academy of Sciences (TIME3D-IGGCAS). This new model covers the whole ionosphere and plasmasphere. It self-consistently solves the equations of mass continuity, motion and energy of electron and ions to give out the time-dependent three-dimensional structures of the main ionospheric and plasmaspheric parameters in realistic geomagnetic fields, including ion number densities of O+, H+, He+, NO+, O2+ , N2+ and electron; electron and ion temperature; and ion velocity vectors. TIME3D-IGGCAS can also self-consistently run as the module of ionosphere-plasmasphere of GCITEM-IGGCAS (Global Coupled Ionosphere-Thermosphere-Electrodynamics Model developed at Institute of Geology and Geophysics, Chinese Academy of Sciences). We carry out simulations in March Equinox and in June Solstice, and compare the simulated results with that from IRI empirical model. TIME3D-IGGCAS can well reproduce the main ionospheric features in all simulations. We also simulate the ionospheric differences between different kinds of geomagnetic fields. The results suggest that the geomagnetic field configuration obviously affect the ionospheric plasma density, and the differences between NmF2 in realistic geomagnetic fields and that in tilted dipole fields can be larger than 60%.
Ipsen, S; Blanck, O; Lowther, N J; Liney, G P; Rai, R; Bode, F; Dunst, J; Schweikard, A; Keall, P J
2016-11-21
Radiosurgery to the pulmonary vein antrum in the left atrium (LA) has recently been proposed for non-invasive treatment of atrial fibrillation (AF). Precise real-time target localization during treatment is necessary due to complex respiratory and cardiac motion and high radiation doses. To determine the 3D position of the LA for motion compensation during radiosurgery, a tracking method based on orthogonal real-time MRI planes was developed for AF treatments with an MRI-guided radiotherapy system. Four healthy volunteers underwent cardiac MRI of the LA. Contractile motion was quantified on 3D LA models derived from 4D scans with 10 phases acquired in end-exhalation. Three localization strategies were developed and tested retrospectively on 2D real-time scans (sagittal, temporal resolution 100 ms, free breathing). The best-performing method was then used to measure 3D target positions in 2D-2D orthogonal planes (sagittal-coronal, temporal resolution 200-252 ms, free breathing) in 20 configurations of a digital phantom and in the volunteer data. The 3D target localization accuracy was quantified in the phantom and qualitatively assessed in the real data. Mean cardiac contraction was ⩽ 3.9 mm between maximum dilation and contraction but anisotropic. A template matching approach with two distinct template phases and ECG-based selection yielded the highest 2D accuracy of 1.2 mm. 3D target localization showed a mean error of 3.2 mm in the customized digital phantoms. Our algorithms were successfully applied to the 2D-2D volunteer data in which we measured a mean 3D LA motion extent of 16.5 mm (SI), 5.8 mm (AP) and 3.1 mm (LR). Real-time target localization on orthogonal MRI planes was successfully implemented for highly deformable targets treated in cardiac radiosurgery. The developed method measures target shifts caused by respiration and cardiac contraction. If the detected motion can be compensated accordingly, an MRI-guided radiotherapy
NASA Astrophysics Data System (ADS)
Ipsen, S.; Blanck, O.; Lowther, N. J.; Liney, G. P.; Rai, R.; Bode, F.; Dunst, J.; Schweikard, A.; Keall, P. J.
2016-11-01
Radiosurgery to the pulmonary vein antrum in the left atrium (LA) has recently been proposed for non-invasive treatment of atrial fibrillation (AF). Precise real-time target localization during treatment is necessary due to complex respiratory and cardiac motion and high radiation doses. To determine the 3D position of the LA for motion compensation during radiosurgery, a tracking method based on orthogonal real-time MRI planes was developed for AF treatments with an MRI-guided radiotherapy system. Four healthy volunteers underwent cardiac MRI of the LA. Contractile motion was quantified on 3D LA models derived from 4D scans with 10 phases acquired in end-exhalation. Three localization strategies were developed and tested retrospectively on 2D real-time scans (sagittal, temporal resolution 100 ms, free breathing). The best-performing method was then used to measure 3D target positions in 2D-2D orthogonal planes (sagittal-coronal, temporal resolution 200-252 ms, free breathing) in 20 configurations of a digital phantom and in the volunteer data. The 3D target localization accuracy was quantified in the phantom and qualitatively assessed in the real data. Mean cardiac contraction was ⩽ 3.9 mm between maximum dilation and contraction but anisotropic. A template matching approach with two distinct template phases and ECG-based selection yielded the highest 2D accuracy of 1.2 mm. 3D target localization showed a mean error of 3.2 mm in the customized digital phantoms. Our algorithms were successfully applied to the 2D-2D volunteer data in which we measured a mean 3D LA motion extent of 16.5 mm (SI), 5.8 mm (AP) and 3.1 mm (LR). Real-time target localization on orthogonal MRI planes was successfully implemented for highly deformable targets treated in cardiac radiosurgery. The developed method measures target shifts caused by respiration and cardiac contraction. If the detected motion can be compensated accordingly, an MRI-guided radiotherapy
NASA Astrophysics Data System (ADS)
Torbert, R. B.; Burch, J. L.; Russell, C. T.; Magnes, W.; Ergun, R. E.; Lindqvist, P. A.; Le Contel, O.; Vaith, H.; Macri, J.; Myers, S.; Rau, D.; Needell, J.; King, B.; Granoff, M.; Chutter, M.; Dors, I.; Argall, M. R.; Shuster, J. R.; Olsson, G.; Marklund, G. T.; Khotyaintsev, Y. V.; Eriksson, A. I.; Kletzing, C.; Bounds, S. R.; Anderson, B. J.; Baumjohann, W.; Steller, M.; Bromund, K. R.; Le, G.; Nakamura, R.; Strangeway, R. J.; Leinweber, H. K.; Tucker, S.; Westfall, J.; Fischer, D.; Plaschke, F.; Pollock, C. J.; Giles, B. L.; Moore, T. E.; Mauk, B.; Fuselier, S. A.
2015-12-01
The electrodynamics at the magnetopause is key to our understanding of ion and electron acceleration within reconnection regions. The Magnetospheric Multiscale (MMS) fleet of four spacecraft was launched into its Phase-1 equatorial orbit of 12 Re apogee specifically to investigate these regions at the Earth's magnetopause. In addition to a comprehensive suite of particle measurements, MMS makes very high time resolution 3D electric and magnetic field measurements of high accuracy using flux-gate, search coil, 3-axis double probe, and electron drift sensors. In September 2015, the MMS fleet will begin to encounter the dusk-side magnetopause in its initial configuration of approximately 160 km separation, allowing investigation of the spatial and temporal characteristics of important electrodynamics during reconnection. Using these field and particle measurements, we present first observations of 3D magnetic and electric fields (including their parallel component), and inferred current sheets, during active magnetopause crossings using the highest time resolution data available on MMS.
Finite difference methods for approximating Heaviside functions
NASA Astrophysics Data System (ADS)
Towers, John D.
2009-05-01
We present a finite difference method for discretizing a Heaviside function H(u(x→)), where u is a level set function u:Rn ↦ R that is positive on a bounded region Ω⊂Rn. There are two variants of our algorithm, both of which are adapted from finite difference methods that we proposed for discretizing delta functions in [J.D. Towers, Two methods for discretizing a delta function supported on a level set, J. Comput. Phys. 220 (2007) 915-931; J.D. Towers, Discretizing delta functions via finite differences and gradient normalization, Preprint at http://www.miracosta.edu/home/jtowers/; J.D. Towers, A convergence rate theorem for finite difference approximations to delta functions, J. Comput. Phys. 227 (2008) 6591-6597]. We consider our approximate Heaviside functions as they are used to approximate integrals over Ω. We prove that our first approximate Heaviside function leads to second order accurate quadrature algorithms. Numerical experiments verify this second order accuracy. For our second algorithm, numerical experiments indicate at least third order accuracy if the integrand f and ∂Ω are sufficiently smooth. Numerical experiments also indicate that our approximations are effective when used to discretize certain singular source terms in partial differential equations. We mostly focus on smooth f and u. By this we mean that f is smooth in a neighborhood of Ω, u is smooth in a neighborhood of ∂Ω, and the level set u(x)=0 is a manifold of codimension one. However, our algorithms still give reasonable results if either f or u has jumps in its derivatives. Numerical experiments indicate approximately second order accuracy for both algorithms if the regularity of the data is reduced in this way, assuming that the level set u(x)=0 is a manifold. Numerical experiments indicate that dependence on the placement of Ω with respect to the grid is quite small for our algorithms. Specifically, a grid shift results in an O(hp) change in the computed solution
Wakefield Simulation of CLIC PETS Structure Using Parallel 3D Finite Element Time-Domain Solver T3P
Candel, A.; Kabel, A.; Lee, L.; Li, Z.; Ng, C.; Schussman, G.; Ko, K.; Syratchev, I.; /CERN
2009-06-19
In recent years, SLAC's Advanced Computations Department (ACD) has developed the parallel 3D Finite Element electromagnetic time-domain code T3P. Higher-order Finite Element methods on conformal unstructured meshes and massively parallel processing allow unprecedented simulation accuracy for wakefield computations and simulations of transient effects in realistic accelerator structures. Applications include simulation of wakefield damping in the Compact Linear Collider (CLIC) power extraction and transfer structure (PETS).
NASA Astrophysics Data System (ADS)
Levin, Gennady G.; Vishnyakov, Gennady N.; Naumov, Alexey V.; Abramov, Sergey
1998-03-01
We offer to use the 3D surface profile real-time measurement using phase-shifted interference fringe projection technique for the cranioficial identification. Our system realizes the profile measurement by projecting interference fringe pattern on the object surface and by observing the deformed fringe pattern at the direction different from the projection. Fringes are formed by a Michelson interferometer with one mirror mounted on a piezoelectric translator. Four steps self- calibration phase-shift method was used.
Mory, Cyril; Auvray, Vincent; Zhang, Bo; Grass, Michael; Schäfer, Dirk; Chen, S. James; Carroll, John D.; Rit, Simon; Peyrin, Françoise; Douek, Philippe; Boussel, Loïc
2014-02-15
Purpose: Reconstruction of the beating heart in 3D + time in the catheter laboratory using only the available C-arm system would improve diagnosis, guidance, device sizing, and outcome control for intracardiac interventions, e.g., electrophysiology, valvular disease treatment, structural or congenital heart disease. To obtain such a reconstruction, the patient's electrocardiogram (ECG) must be recorded during the acquisition and used in the reconstruction. In this paper, the authors present a 4D reconstruction method aiming to reconstruct the heart from a single sweep 10 s acquisition. Methods: The authors introduce the 4D RecOnstructiOn using Spatial and TEmporal Regularization (short 4D ROOSTER) method, which reconstructs all cardiac phases at once, as a 3D + time volume. The algorithm alternates between a reconstruction step based on conjugate gradient and four regularization steps: enforcing positivity, averaging along time outside a motion mask that contains the heart and vessels, 3D spatial total variation minimization, and 1D temporal total variation minimization. Results: 4D ROOSTER recovers the different temporal representations of a moving Shepp and Logan phantom, and outperforms both ECG-gated simultaneous algebraic reconstruction technique and prior image constrained compressed sensing on a clinical case. It generates 3D + time reconstructions with sharp edges which can be used, for example, to estimate the patient's left ventricular ejection fraction. Conclusions: 4D ROOSTER can be applied for human cardiac C-arm CT, and potentially in other dynamic tomography areas. It can easily be adapted to other problems as regularization is decoupled from projection and back projection.
Finite difference seismic modeling of axial magma chambers
Swift, S.A.; Dougherty, M.E.; Stephen, R.A. )
1990-11-01
The authors tested the feasibility of using finite difference methods to model seismic propagation at {approximately}10 Hx through a two-dimensional representation of an axial magma chamber with a thin, liquid lid. This technique produces time series of displacement or pressure at seafloor receivers to mimic a seismic refraction experiment and snapshots of P and S energy propagation. The results indicate that the implementation is stable for models with sharp velocity contrasts and complex geometries. The authors observe a high-energy, downward-traveling shear phase, observable only with borehole receivers, that would be useful in studying the nature and shape of magma chambers. The ability of finite difference methods to model high-order wave phenomena makes this method ideal for testing velocity models of spreading axes and for planning near-axis drilling of the East Pacific Rise in order to optimize the benefits from shear wave imaging of sub-axis structure.
Finite elements and finite differences for transonic flow calculations
NASA Technical Reports Server (NTRS)
Hafez, M. M.; Murman, E. M.; Wellford, L. C.
1978-01-01
The paper reviews the chief finite difference and finite element techniques used for numerical solution of nonlinear mixed elliptic-hyperbolic equations governing transonic flow. The forms of the governing equations for unsteady two-dimensional transonic flow considered are the Euler equation, the full potential equation in both conservative and nonconservative form, the transonic small-disturbance equation in both conservative and nonconservative form, and the hodograph equations for the small-disturbance case and the full-potential case. Finite difference methods considered include time-dependent methods, relaxation methods, semidirect methods, and hybrid methods. Finite element methods include finite element Lax-Wendroff schemes, implicit Galerkin method, mixed variational principles, dual iterative procedures, optimal control methods and least squares.
Reichenbach, Jürgen R.
2016-01-01
This work’s aim was to minimize the acquisition time of a radial 3D ultra-short echo-time (UTE) sequence and to provide fully automated, gradient delay compensated, and therefore artifact free, reconstruction. The radial 3D UTE sequence (echo time 60 μs) was implemented as single echo acquisition with center-out readouts and improved time efficient spoiling on a clinical 3T scanner without hardware modifications. To assess the sequence parameter dependent gradient delays each acquisition contained a quick calibration scan and utilized the phase of the readouts to detect the actual k-space center. This calibration scan does not require any user interaction. To evaluate the robustness of this automatic delay estimation phantom experiments were performed and 19 in vivo imaging data of the head, tibial cortical bone, feet and lung were acquired from 6 volunteers. As clinical application of this fast 3D UTE acquisition single breath-hold lung imaging is demonstrated. The proposed sequence allowed very short repetition times (TR~1ms), thus reducing total acquisition time. The proposed, fully automated k-phase based gradient delay calibration resulted in accurate delay estimations (difference to manually determined optimal delay −0.13 ± 0.45 μs) and allowed unsupervised reconstruction of high quality images for both phantom and in vivo data. The employed fast spoiling scheme efficiently suppressed artifacts caused by incorrectly refocused echoes. The sequence proved to be quite insensitive to motion, flow and susceptibility artifacts and provides oversampling protection against aliasing foldovers in all directions. Due to the short TR, acquisition times are attractive for a wide range of clinical applications. For short T2* mapping this sequence provides free choice of the second TE, usually within less scan time as a comparable dual echo UTE sequence. PMID:26975051
Herrmann, Karl-Heinz; Krämer, Martin; Reichenbach, Jürgen R
2016-01-01
This work's aim was to minimize the acquisition time of a radial 3D ultra-short echo-time (UTE) sequence and to provide fully automated, gradient delay compensated, and therefore artifact free, reconstruction. The radial 3D UTE sequence (echo time 60 μs) was implemented as single echo acquisition with center-out readouts and improved time efficient spoiling on a clinical 3T scanner without hardware modifications. To assess the sequence parameter dependent gradient delays each acquisition contained a quick calibration scan and utilized the phase of the readouts to detect the actual k-space center. This calibration scan does not require any user interaction. To evaluate the robustness of this automatic delay estimation phantom experiments were performed and 19 in vivo imaging data of the head, tibial cortical bone, feet and lung were acquired from 6 volunteers. As clinical application of this fast 3D UTE acquisition single breath-hold lung imaging is demonstrated. The proposed sequence allowed very short repetition times (TR~1ms), thus reducing total acquisition time. The proposed, fully automated k-phase based gradient delay calibration resulted in accurate delay estimations (difference to manually determined optimal delay -0.13 ± 0.45 μs) and allowed unsupervised reconstruction of high quality images for both phantom and in vivo data. The employed fast spoiling scheme efficiently suppressed artifacts caused by incorrectly refocused echoes. The sequence proved to be quite insensitive to motion, flow and susceptibility artifacts and provides oversampling protection against aliasing foldovers in all directions. Due to the short TR, acquisition times are attractive for a wide range of clinical applications. For short T2* mapping this sequence provides free choice of the second TE, usually within less scan time as a comparable dual echo UTE sequence.
CO2 mass estimation visible in time-lapse 3D seismic data from a saline aquifer and uncertainties
NASA Astrophysics Data System (ADS)
Ivanova, A.; Lueth, S.; Bergmann, P.; Ivandic, M.
2014-12-01
At Ketzin (Germany) the first European onshore pilot scale project for geological storage of CO2 was initiated in 2004. This project is multidisciplinary and includes 3D time-lapse seismic monitoring. A 3D pre-injection seismic survey was acquired in 2005. Then CO2 injection into a sandstone saline aquifer started at a depth of 650 m in 2008. A 1st 3D seismic repeat survey was acquired in 2009 after 22 kilotons had been injected. The imaged CO2 signature was concentrated around the injection well (200-300 m). A 2nd 3D seismic repeat survey was acquired in 2012 after 61 kilotons had been injected. The imaged CO2 signature further extended (100-200 m). The injection was terminated in 2013. Totally 67 kilotons of CO2 were injected. Time-lapse seismic processing, petrophysical data and geophysical logging on CO2 saturation have allowed for an estimate of the amount of CO2 visible in the seismic data. This estimate is dependent upon a choice of a number of parameters and contains a number of uncertainties. The main uncertainties are following. The constant reservoir porosity and CO2 density used for the estimation are probably an over-simplification since the reservoir is quite heterogeneous. May be velocity dispersion is present in the Ketzin reservoir rocks, but we do not consider it to be large enough that it could affect the mass of CO2 in our estimation. There are only a small number of direct petrophysical observations, providing a weak statistical basis for the determination of seismic velocities based on CO2 saturation and we have assumed that the petrophysical experiments were carried out on samples that are representative for the average properties of the whole reservoir. Finally, the most of the time delay values in the both 3D seismic repeat surveys within the amplitude anomaly are near the noise level of 1-2 ms, however a change of 1 ms in the time delay affects significantly the mass estimate, thus the choice of the time-delay cutoff is crucial. In spite
3D-SURFER 2.0: web platform for real-time search and characterization of protein surfaces.
Xiong, Yi; Esquivel-Rodriguez, Juan; Sael, Lee; Kihara, Daisuke
2014-01-01
The increasing number of uncharacterized protein structures necessitates the development of computational approaches for function annotation using the protein tertiary structures. Protein structure database search is the basis of any structure-based functional elucidation of proteins. 3D-SURFER is a web platform for real-time protein surface comparison of a given protein structure against the entire PDB using 3D Zernike descriptors. It can smoothly navigate the protein structure space in real-time from one query structure to another. A major new feature of Release 2.0 is the ability to compare the protein surface of a single chain, a single domain, or a single complex against databases of protein chains, domains, complexes, or a combination of all three in the latest PDB. Additionally, two types of protein structures can now be compared: all-atom-surface and backbone-atom-surface. The server can also accept a batch job for a large number of database searches. Pockets in protein surfaces can be identified by VisGrid and LIGSITE (csc) . The server is available at http://kiharalab.org/3d-surfer/.
NASA Astrophysics Data System (ADS)
Lee, Gun-Ill; Park, Rae-Hong; Song, Young-Seuk; Kim, Cheol-An; Hwang, Jae-Sub
2003-05-01
In this paper, we present a motion compensated frame rate up-conversion method for real-time three-dimensional (3-D) ultrasound fetal image enhancement. The conventional mechanical scan method with one-dimensional (1-D) array converters used for 3-D volume data acquisition has a slow frame rate of multi-planar images. This drawback is not an issue for stationary objects, however in ultrasound images showing a fetus of more than about 25 weeks, we perceive abrupt changes due to fast motions. To compensate for this defect, we propose the frame rate up-conversion method by which new interpolated frames are inserted between two input frames, giving smooth renditions to human eyes. More natural motions can be obtained by frame rate up-conversion. In the proposed algorithm, we employ forward motion estimation (ME), in which motion vectors (MVs) ar estimated using a block matching algorithm (BMA). To smooth MVs over neighboring blocks, vector median filtering is performed. Using these smoothed MVs, interpolated frames are reconstructed by motion compensation (MC). The undesirable blocking artifacts due to blockwise processing are reduced by block boundary filtering using a Gaussian low pass filter (LPF). The proposed method can be used in computer aided diagnosis (CAD), where more natural 3-D ultrasound images are displayed in real-time. Simulation results with several real test sequences show the effectiveness of the proposed algorithm.
Development of real-time motion capture system for 3D on-line games linked with virtual character
NASA Astrophysics Data System (ADS)
Kim, Jong Hyeong; Ryu, Young Kee; Cho, Hyung Suck
2004-10-01
Motion tracking method is being issued as essential part of the entertainment, medical, sports, education and industry with the development of 3-D virtual reality. Virtual human character in the digital animation and game application has been controlled by interfacing devices; mouse, joysticks, midi-slider, and so on. Those devices could not enable virtual human character to move smoothly and naturally. Furthermore, high-end human motion capture systems in commercial market are expensive and complicated. In this paper, we proposed a practical and fast motion capturing system consisting of optic sensors, and linked the data with 3-D game character with real time. The prototype experiment setup is successfully applied to a boxing game which requires very fast movement of human character.
Three-dimensional ultrashort echo time cones T1ρ (3D UTE-cones-T1ρ ) imaging.
Ma, Ya-Jun; Carl, Michael; Shao, Hongda; Tadros, Anthony S; Chang, Eric Y; Du, Jiang
2017-03-20
We report a novel three-dimensional (3D) ultrashort echo time (UTE) sequence employing Cones trajectory and T1ρ preparation (UTE-Cones-T1ρ ) for quantitative T1ρ assessment of short T2 tissues in the musculoskeletal system. A basic 3D UTE-Cones sequence was combined with a spin-locking preparation pulse for T1ρ contrast. A relatively short TR was used to decrease the scan time, which required T1 measurement and compensation using 3D UTE-Cones data acquisitions with variable TRs. Another strategy to reduce the total scan time was to acquire multiple Cones spokes (Nsp ) after each T1ρ preparation and fat saturation. Four spin-locking times (TSL = 0-20 ms) were acquired over 12 min, plus another 7 min for T1 measurement. The 3D UTE-Cones-T1ρ sequence was compared with a two-dimensional (2D) spiral-T1ρ sequence for the imaging of a spherical CuSO4 phantom and ex vivo meniscus and tendon specimens, as well as the knee and ankle joints of healthy volunteers, using a clinical 3-T scanner. The CuSO4 phantom showed a T1ρ value of 76.5 ± 1.6 ms with the 2D spiral-T1ρ sequence, as well as 85.7 ± 3.6 and 89.2 ± 1.4 ms for the 3D UTE-Cones-T1ρ sequences with Nsp of 1 and 5, respectively. The 3D UTE-Cones-T1ρ sequence provided shorter T1ρ values for the bovine meniscus sample relative to the 2D spiral-T1ρ sequence (10-12 ms versus 16 ms, respectively). The cadaveric human Achilles tendon sample could only be imaged with the 3D UTE-Cones-T1ρ sequence (T1ρ = 4.0 ± 0.9 ms), with the 2D spiral-T1ρ sequence demonstrating near-zero signal intensity. Human studies yielded T1ρ values of 36.1 ± 2.9, 18.3 ± 3.9 and 3.1 ± 0.4 ms for articular cartilage, meniscus and the Achilles tendon, respectively. The 3D UTE-Cones-T1ρ sequence allows volumetric T1ρ measurement of short T2 tissues in vivo.
Single-photon pulsed-light indirect time-of-flight 3D ranging.
Bellisai, S; Bronzi, D; Villa, F A; Tisa, S; Tosi, A; Zappa, F
2013-02-25
"Indirect" time-of-flight is one technique to obtain depth-resolved images through active illumination that is becoming more popular in the recent years. Several methods and light timing patterns are used nowadays, aimed at improving measurement precision with smarter algorithms, while using less and less light power. Purpose of this work is to present an indirect time-of-flight imaging camera based on pulsed-light active illumination and a 32 × 32 single-photon avalanche diode array with an improved illumination timing pattern, able to increase depth resolution and to reach single-photon level sensitivity.
NASA Astrophysics Data System (ADS)
Meulien Ohlmann, Odile
2013-02-01
Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?
Li, Harold
2016-06-01
Despite widespread IMRT treatments at modern radiation therapy clinics, precise dosimetric commissioning of an IMRT system remains a challenge. In the most recent report from the Radiological Physics Center (RPC), nearly 20% of institutions failed an end-to-end test with an anthropomorphic head and neck phantom, a test that has rather lenient dose difference and distance-to-agreement criteria of 7% and 4 mm. The RPC report provides strong evidence that IMRT implementation is prone to error and that improved quality assurance tools are required. At the heart of radiation therapy dosimetry is the multidimensional dosimeter. However, due to the limited availability of water-equivalent dosimetry materials, research and development in this important field is challenging. In this session, we will review a few dosimeter developments that are either in the laboratory phase or in the pre-commercialization phase. 1) Radiochromic plastic. Novel formulations exhibit light absorbing optical contrast with very little scatter, enabling faster, broad beam optical CT design. 2) Storage phosphor. After irradiation, the dosimetry panels will be read out using a dedicated 2D scanning apparatus in a non-invasive, electro-optic manner and immediately restored for further use. 3) Liquid scintillator. Scintillators convert the energy from x-rays and proton beams into visible light, which can be recorded with a scientific camera (CCD or CMOS) from multiple angles. The 3D shape of the dose distribution can then be reconstructed. 4) Cherenkov emission imaging. Gated intensified imaging allows video-rate passive detection of Cherenkov emission during radiation therapy with the room lights on.
Concept for an airborne real-time ISR system with multi-sensor 3D data acquisition
NASA Astrophysics Data System (ADS)
Haraké, Laura; Schilling, Hendrik; Blohm, Christian; Hillemann, Markus; Lenz, Andreas; Becker, Merlin; Keskin, Göksu; Middelmann, Wolfgang
2016-10-01
In modern aerial Intelligence, Surveillance and Reconnaissance operations, precise 3D information becomes inevitable for increased situation awareness. In particular, object geometries represented by texturized digital surface models constitute an alternative to a pure evaluation of radiometric measurements. Besides the 3D data's level of detail aspect, its availability is time-relevant in order to make quick decisions. Expanding the concept of our preceding remote sensing platform developed together with OHB System AG and Geosystems GmbH, in this paper we present an airborne multi-sensor system based on a motor glider equipped with two wing pods; one carries the sensors, whereas the second pod downlinks sensor data to a connected ground control station by using the Aerial Reconnaissance Data System of OHB. An uplink is created to receive remote commands from the manned mobile ground control station, which on its part processes and evaluates incoming sensor data. The system allows the integration of efficient image processing and machine learning algorithms. In this work, we introduce a near real-time approach for the acquisition of a texturized 3D data model with the help of an airborne laser scanner and four high-resolution multi-spectral (RGB, near-infrared) cameras. Image sequences from nadir and off-nadir cameras permit to generate dense point clouds and to texturize also facades of buildings. The ground control station distributes processed 3D data over a linked geoinformation system with web capabilities to off-site decision-makers. As the accurate acquisition of sensor data requires boresight calibrated sensors, we additionally examine the first steps of a camera calibration workflow.
Dharmaraj, Christopher D.; Thadikonda, Kishan; Fletcher, Anthony R.; Doan, Phuc N.; Devasahayam, Nallathamby; Matsumoto, Shingo; Johnson, Calvin A.; Cook, John A.; Mitchell, James B.; Subramanian, Sankaran; Krishna, Murali C.
2009-01-01
Three-dimensional Oximetric Electron Paramagnetic Resonance Imaging using the Single Point Imaging modality generates unpaired spin density and oxygen images that can readily distinguish between normal and tumor tissues in small animals. It is also possible with fast imaging to track the changes in tissue oxygenation in response to the oxygen content in the breathing air. However, this involves dealing with gigabytes of data for each 3D oximetric imaging experiment involving digital band pass filtering and background noise subtraction, followed by 3D Fourier reconstruction. This process is rather slow in a conventional uniprocessor system. This paper presents a parallelization framework using OpenMP runtime support and parallel MATLAB to execute such computationally intensive programs. The Intel compiler is used to develop a parallel C++ code based on OpenMP. The code is executed on four Dual-Core AMD Opteron shared memory processors, to reduce the computational burden of the filtration task significantly. The results show that the parallel code for filtration has achieved a speed up factor of 46.66 as against the equivalent serial MATLAB code. In addition, a parallel MATLAB code has been developed to perform 3D Fourier reconstruction. Speedup factors of 4.57 and 4.25 have been achieved during the reconstruction process and oximetry computation, for a data set with 23 × 23 × 23 gradient steps. The execution time has been computed for both the serial and parallel implementations using different dimensions of the data and presented for comparison. The reported system has been designed to be easily accessible even from low-cost personal computers through local internet (NIHnet). The experimental results demonstrate that the parallel computing provides a source of high computational power to obtain biophysical parameters from 3D EPR oximetric imaging, almost in real-time. PMID:19672315
Lanthanum halide scintillators for time-of-flight 3-D pet
Karp, Joel S.; Surti, Suleman
2008-06-03
A Lanthanum Halide scintillator (for example LaCl.sub.3 and LaBr.sub.3) with fast decay time and good timing resolution, as well as high light output and good energy resolution, is used in the design of a PET scanner. The PET scanner includes a cavity for accepting a patient and a plurality of PET detector modules arranged in an approximately cylindrical configuration about the cavity. Each PET detector includes a Lanthanum Halide scintillator having a plurality of Lanthanum Halide crystals, a light guide, and a plurality of photomultiplier tubes arranged respectively peripherally around the cavity. The good timing resolution enables a time-of-flight (TOF) PET scanner to be developed that exhibits a reduction in noise propagation during image reconstruction and a gain in the signal-to-noise ratio. Such a PET scanner includes a time stamp circuit that records the time of receipt of gamma rays by respective PET detectors and provides timing data outputs that are provided to a processor that, in turn, calculates time-of-flight (TOF) of gamma rays through a patient in the cavity and uses the TOF of gamma rays in the reconstruction of images of the patient.
Linden, Katharina; Dewald, Oliver; Gatzweiler, Eva; Seehase, Matthias; Duerr, Georg Daniel; Dörner, Jonas; Kleppe, Stephanie
2016-01-01
Background Pressure-volume loops (PVL) provide vital information regarding ventricular performance and pathophysiology in cardiac disease. Unfortunately, acquisition of PVL by conductance technology is not feasible in neonates and small children due to the available human catheter size and resulting invasiveness. The aim of the study was to validate the accuracy of PVL in small hearts using volume data obtained by real-time three-dimensional echocardiography (3DE) and simultaneously acquired pressure data. Methods In 17 piglets (weight range: 3.6–8.0 kg) left ventricular PVL were generated by 3DE and simultaneous recordings of ventricular pressure using a mini pressure wire (PVL3D). PVL3D were compared to conductance catheter measurements (PVLCond) under various hemodynamic conditions (baseline, alpha-adrenergic stimulation with phenylephrine, beta-adrenoreceptor-blockage using esmolol). In order to validate the accuracy of 3D volumetric data, cardiac magnetic resonance imaging (CMR) was performed in another 8 piglets. Results Correlation between CMR- and 3DE-derived volumes was good (enddiastolic volume: mean bias -0.03ml ±1.34ml). Computation of PVL3D in small hearts was feasible and comparable to results obtained by conductance technology. Bland-Altman analysis showed a low bias between PVL3D and PVLCond. Systolic and diastolic parameters were closely associated (Intraclass-Correlation Coefficient for: systolic myocardial elastance 0.95, arterial elastance 0.93, diastolic relaxation constant tau 0.90, indexed end-diastolic volume 0.98). Hemodynamic changes under different conditions were well detected by both methods (ICC 0.82 to 0.98). Inter- and intra-observer coefficients of variation were below 5% for all parameters. Conclusions PVL3D generated from 3DE combined with mini pressure wire represent a novel, feasible and reliable method to assess different hemodynamic conditions of cardiac function in hearts comparable to neonate and infant size. This
NASA Astrophysics Data System (ADS)
Gao, J.; Zhang, H.
2015-12-01
Near surface geophysical exploration for the purpose of engineering design or construction For this reason, geophysical imaging demands a higher resolution and a better quantitative interpretation. Seismic travel time tomography and direct current resistivity tomography are two main methods for the near surface survey. Because of the limited coverage of observation system and the complex physical relationship between physical parameters and observations, individual geophysical method suffers issues of non-uniqueness and resolution limitation to some degree. We have developed a joint inversion method to combine seismic travel time tomography and full channel resistivity tomography. For the full channel resistivity survey, it uses two electrodes for power supply and all the other electrodes for recording. Compared with the traditional resistivity method, it collects more data and has a better model converge. Our joint inversion strategy relies on the structure constraint enforced through minimizing cross gradients between seismic velocity and resistivity models (Gallardo, 2003). For resistivity tomography, sensitivity kernels are obtained through the adjoint method by solving the electrostatic field equation with the finite-difference method. For seismic travel time tomography, ray paths and travel times are calculated using the fast marching method. We have tested our joint inversion method for a 2D cross-hole problem where two small zones with high and low velocity/resistivity anomalies. Seismic/electrical sources/receivers are installed in two boreholes. For separate seismic inversion, the smearing effect is evident and two anomaly zones are distorted and misplaced. For separate electric resistivity inversion, although two anomaly zones are positioned correctly their values are not accurate. By joint inversion, two velocity anomaly zones are clearly imaged and the smearing effect is greatly reduced. In comparison, for the resistivity model, the two anomaly zones
Radiation and polarization signatures of the 3D multizone time-dependent hadronic blazar model
Zhang, Haocheng; Diltz, Chris; Bottcher, Markus
2016-09-23
We present a newly developed time-dependent three-dimensional multizone hadronic blazar emission model. By coupling a Fokker–Planck-based lepto-hadronic particle evolution code, 3DHad, with a polarization-dependent radiation transfer code, 3DPol, we are able to study the time-dependent radiation and polarization signatures of a hadronic blazar model for the first time. Our current code is limited to parameter regimes in which the hadronic γ-ray output is dominated by proton synchrotron emission, neglecting pion production. Our results demonstrate that the time-dependent flux and polarization signatures are generally dominated by the relation between the synchrotron cooling and the light-crossing timescale, which is largely independent of the exact model parameters. We find that unlike the low-energy polarization signatures, which can vary rapidly in time, the high-energy polarization signatures appear stable. Lastly, future high-energy polarimeters may be able to distinguish such signatures from the lower and more rapidly variable polarization signatures expected in leptonic models.
Radiation and polarization signatures of the 3D multizone time-dependent hadronic blazar model
Zhang, Haocheng; Diltz, Chris; Bottcher, Markus
2016-09-23
We present a newly developed time-dependent three-dimensional multizone hadronic blazar emission model. By coupling a Fokker–Planck-based lepto-hadronic particle evolution code, 3DHad, with a polarization-dependent radiation transfer code, 3DPol, we are able to study the time-dependent radiation and polarization signatures of a hadronic blazar model for the first time. Our current code is limited to parameter regimes in which the hadronic γ-ray output is dominated by proton synchrotron emission, neglecting pion production. Our results demonstrate that the time-dependent flux and polarization signatures are generally dominated by the relation between the synchrotron cooling and the light-crossing timescale, which is largely independent ofmore » the exact model parameters. We find that unlike the low-energy polarization signatures, which can vary rapidly in time, the high-energy polarization signatures appear stable. Lastly, future high-energy polarimeters may be able to distinguish such signatures from the lower and more rapidly variable polarization signatures expected in leptonic models.« less
5D Data Modelling: Full Integration of 2D/3D Space, Time and Scale Dimensions
NASA Astrophysics Data System (ADS)
van Oosterom, Peter; Stoter, Jantien
This paper proposes an approach for data modelling in five dimensions. Apart from three dimensions for geometrical representation and a fourth dimension for time, we identify scale as fifth dimensional characteristic. Considering scale as an extra dimension of geographic information, fully integrated with the other dimensions, is new. Through a formal definition of geographic data in a conceptual 5D continuum, the data can be handled by one integrated approach assuring consistency across scale and time dimensions. Because the approach is new and challenging, we choose to step-wise studying several combinations of the five dimensions, ultimately resulting in the optimal 5D model. We also propose to apply mathematical theories on multidimensional modelling to well established principles of multidimensional modelling in the geo-information domain. The result is a conceptual full partition of the 3Dspace+time+scale space (i.e. no overlaps, no gaps) realised in a 5D data model implemented in a Database Management System.
Real-time geometric scene estimation for RGBD images using a 3D box shape grammar
NASA Astrophysics Data System (ADS)
Willis, Andrew R.; Brink, Kevin M.
2016-06-01
This article describes a novel real-time algorithm for the purpose of extracting box-like structures from RGBD image data. In contrast to conventional approaches, the proposed algorithm includes two novel attributes: (1) it divides the geometric estimation procedure into subroutines having atomic incremental computational costs, and (2) it uses a generative "Block World" perceptual model that infers both concave and convex box elements from detection of primitive box substructures. The end result is an efficient geometry processing engine suitable for use in real-time embedded systems such as those on an UAVs where it is intended to be an integral component for robotic navigation and mapping applications.
Time-resolved diffusion tomographic 2D and 3D imaging in highly scattering turbid media
NASA Technical Reports Server (NTRS)
Alfano, Robert R. (Inventor); Cai, Wei (Inventor); Liu, Feng (Inventor); Lax, Melvin (Inventor); Das, Bidyut B. (Inventor)
1999-01-01
A method for imaging objects in highly scattering turbid media. According to one embodiment of the invention, the method involves using a plurality of intersecting source/detectors sets and time-resolving equipment to generate a plurality of time-resolved intensity curves for the diffusive component of light emergent from the medium. For each of the curves, the intensities at a plurality of times are then inputted into the following inverse reconstruction algorithm to form an image of the medium: ##EQU1## wherein W is a matrix relating output at source and detector positions r.sub.s and r.sub.d, at time t, to position r, .LAMBDA. is a regularization matrix, chosen for convenience to be diagonal, but selected in a way related to the ratio of the noise,
Time-resolved diffusion tomographic 2D and 3D imaging in highly scattering turbid media
NASA Technical Reports Server (NTRS)
Alfano, Robert R. (Inventor); Cai, Wei (Inventor); Gayen, Swapan K. (Inventor)
2000-01-01
A method for imaging objects in highly scattering turbid media. According to one embodiment of the invention, the method involves using a plurality of intersecting source/detectors sets and time-resolving equipment to generate a plurality of time-resolved intensity curves for the diffusive component of light emergent from the medium. For each of the curves, the intensities at a plurality of times are then inputted into the following inverse reconstruction algorithm to form an image of the medium: wherein W is a matrix relating output at source and detector positions r.sub.s and r.sub.d, at time t, to position r, .LAMBDA. is a regularization matrix, chosen for convenience to be diagonal, but selected in a way related to the ratio of the noise,
Enhancing Time-Connectives with 3D Immersive Virtual Reality (IVR)
ERIC Educational Resources Information Center
Passig, David; Eden, Sigal
2010-01-01
This study sought to test the most efficient representation mode with which children with hearing impairment could express a story while producing connectives indicating relations of time and of cause and effect. Using Bruner's (1973, 1986, 1990) representation stages, we tested the comparative effectiveness of Virtual Reality (VR) as a mode of…
NPSNET: Real-Time 3D Ground-Based Vehicle Dynamics
1992-03-01
9 C. NEWTON -EULER EQUATIONS .................................... 9 1 . Linear And Angular Acceleration............................. 9 2...Baraff, 91]. C. NEWTON -EULER EQUATIONS 1. Linear and Angular Acceleration Two parts of Newton -Euler equations are the translational motion of its...in each time step. 2. Vehicle Speed And Direction The vehicle speed is computed by linear acceleration using Newton -Euler equations. Newton -Euler
Real-time 3D imaging of Haines jumps in porous media flow
Berg, Steffen; Ott, Holger; Klapp, Stephan A.; Schwing, Alex; Neiteler, Rob; Brussee, Niels; Makurat, Axel; Leu, Leon; Enzmann, Frieder; Schwarz, Jens-Oliver; Kersten, Michael; Irvine, Sarah; Stampanoni, Marco
2013-01-01
Newly developed high-speed, synchrotron-based X-ray computed microtomography enabled us to directly image pore-scale displacement events in porous rock in real time. Common approaches to modeling macroscopic fluid behavior are phenomenological, have many shortcomings, and lack consistent links to elementary pore-scale displacement processes, such as Haines jumps and snap-off. Unlike the common singular pore jump paradigm based on observations of restricted artificial capillaries, we found that Haines jumps typically cascade through 10–20 geometrically defined pores per event, accounting for 64% of the energy dissipation. Real-time imaging provided a more detailed fundamental understanding of the elementary processes in porous media, such as hysteresis, snap-off, and nonwetting phase entrapment, and it opens the way for a rigorous process for upscaling based on thermodynamic models. PMID:23431151
Time-resolved (kHz) 3D imaging of OH PLIF in a flame
NASA Astrophysics Data System (ADS)
Wellander, Rikard; Richter, Mattias; Aldén, Marcus
2014-06-01
Based on scanning planar laser-induced fluorescence of OH, a measurement system with the capability to record time-resolved three-dimensional image sequences of the OH concentration and the flame front is demonstrated on a premixed flame. A dual-mirror scanning system is used to obtain equidistance between the illuminated planes. Non-uniformities in the laser sheet and laser absorption in the flame are compensated for as the position- and time-dependent OH concentration is calculated throughout the measurement volume. A method for identifying the flame front in large data sets with a single set of filtering parameter is demonstrated. The artefacts introduced by the non-instantaneous recording of the measurement volume are suppressed using linear interpolation from successive recordings in the same measurement plane. The impact from filtering and image post-processing on the achieved spatial resolution is investigated. A final spatial and temporal resolution of 3.2 × 3.2 × 0.75 lines/mm and 2 ms, respectively, are obtained in a measurement volume spanning 11 × 22 × 6 mm during a time span of 0.5 s.
Time dependence of Fe/O ratio within a 3D solar energetic particle propagation model including drift
NASA Astrophysics Data System (ADS)
Dalla, S.; Marsh, M. S.; Zelina, P.; Laitinen, T.
2017-02-01
Context. The intensity profiles of iron and oxygen in Solar Energetic Particle (SEP) events often display differences that result in a decreasing Fe/O ratio over time. The physical mechanisms behind this behaviour are not fully understood, but these observational signatures provide important tests of physical modelling efforts. Aims: In this paper we study the propagation of iron and oxygen SEP ions using a 3D model of propagation which includes the effect of guiding centre drift in a Parker spiral magnetic field. We derive time intensity profiles for a variety of observer locations and study the temporal evolution of the Fe/O ratio. Methods: We use a 3D full orbit test particle model which includes scattering. The configuration of the interplanetary magnetic field is a unipolar Parker spiral. Particles are released instantaneously from a compact region at two solar radii and allowed to propagate in 3D. Results: Both Fe and O experience significant transport across the magnetic field due to gradient and curvature drifts. We find that Fe ions drift more than O ions due to their larger mass-to-charge ratio, so that an observer that is not magnetically well connected to the source region will observe Fe arriving before O, for particles within the same range in energy per nucleon. As a result, for the majority of observer locations, the Fe/O ratio displays a decrease in time. Conclusions: We conclude that propagation effects associated with drifts produce a decay over time of the Fe/O ratio, qualitatively reproducing that observed in SEP event profiles.
In vitro 3-D model based on extending time of culture for studying chronological epidermis aging.
Dos Santos, Morgan; Metral, Elodie; Boher, Aurélie; Rousselle, Patricia; Thepot, Amélie; Damour, Odile
2015-09-01
Skin aging is a complex phenomenon in which several mechanisms operate simultaneously. Among them, intrinsic aging is a time-dependent process, which leads to gradual skin changes affecting its structure and function such as thinning down of both epidermal and dermal compartments and a flattening and fragility of the dermo-epidermal junction. Today, several approaches have been proposed for the generation of aged skin in vitro, including skin explants from aged donors and three-dimensional skin equivalent treated by aging-inducing chemical compounds or engineered with human cells isolated from aged donors. The aim of this study was to develop and validate a new in vitro model of aging based on skin equivalent demonstrating the same phenotypic changes that were observed in chronological aging. By using prolonged culture as a proxy for cellular aging, we extended to 120 days the culture time of a skin equivalent model based on collagen-glycosaminoglycan-chitosan porous polymer and engineered with human skin cells from photo-protected sites of young donors. Morphological, immunohistological and ultrastructural analysis at different time points of the culture allowed characterizing the phenotypic changes observed in our model in comparison to samples of non photo-exposed normal human skin from different ages. We firstly confirmed that long-term cultured skin equivalents are still morphologically consistent and functionally active even after 120 days of culture. However, similar to in vivo chronological skin aging a significant decrease of the epidermis thickness as well as the number of keratinocyte expressing proliferation marker Ki67 are observed in extended culture time skin equivalent. Epidermal differentiation markers loricrin, filaggrin, involucrin and transglutaminase, also strongly decreased. Ultrastructural analysis of basement membrane showed typical features of aged skin such as duplication of lamina densa and alterations of hemidesmosomes. Moreover, the
Enhanced imaging of CO2 at the Ketzin storage site: Inversion of 3D time-lapse seismic data
NASA Astrophysics Data System (ADS)
Gil, M.; Götz, J.; Ivanova, A.; Juhlin, C.; Krawczyk, C. M.; Lüth, S.; Yang, C.
2012-04-01
The Ketzin test site, located near Berlin, is Europe's longest-operating on-shore CO2 storage site. As of December 2011, more than 56,000 tons of food grade CO2 has been injected since June 2008 in an anticlinal structure of the Northeast German Basin. The target reservoir consists of porous, brine bearing sandstone units of the Upper Triassic Stuttgart Formation at approximately 630 to 650 m depth. In order to enhance the understanding of the structural geometry of the site and to investigate the extension of the CO2-plume, several geophysical monitoring methods are being applied at Ketzin, among these are active seismic measurements, geoelectrics and borehole measurements. Among the various seismic techniques (e.g. 2D reflection surveys, crosshole tomography, Vertical Seismic Profiling, 2D- and 3D-Moving Source Profiling) employed at this pilot site, 3D time-lapse reflection surveys are an important component. The baseline 3D survey was acquired in 2005 and the first repeat measurements were performed in 2009 after injection of about 22,000 tons of CO2. The second repeat survey is planned to be carried out in fall 2012. These measurements allow the time-lapse signature of the injected CO2 to be imaged. The time-lapse amplitude variation attributed to the injected CO2 in the reservoir matches, considering detection limits of seismic surface measurements, the expected distribution of the CO2 plume derived from reservoir simulations. Previous attempts towards a quantitative interpretation were based on integrative considerations of different types of geophysical measurements using strict assumptions and characterized by large error bars. In order to increase the resolution and reliability of the data and to improve estimation of rock properties and especially to enhance the imaging resolution of the CO2-plume, the time-lapse 3D seismic data have now been inverted for seismic impedances with different methods, which is the focus of this presentation. One difficulty
Time-dependent 3-D modelling of laser surface heating for the hardening of metallic materials
NASA Astrophysics Data System (ADS)
Colombo, V.; Mentrelli, A.; Trombetti, T.
2003-12-01
A numerical code for the time-dependent three-dimensional modelling of the laser surface heating for the hardening of metallic materials has been developed by the authors. The temperature-dependence of the thermal properties of the material (stainless steel) is taken into account in the frame of a heating process that doesn’t lead to material melting or evaporation. Calculations have been carried out for various dimensions of the parallelepiped-shaped and of the square-shaped spot of the laser beam, as well as for different scanning velocity and for different levels of the laser source power. Various patterns of the laser spot path have also been studied, including a single-pass hardening pattern, a double-pass hardening pattern with and without overlapping, multiple discontinuous and continuous hardening patterns and spiral hardening patterns. The presented results show how the proposed model can be usefully employed in the prediction of the time-evolution of temperature distribution which arises in the workpiece as a consequence of the laser-workpiece interaction under operating conditions typically encountered in industrial applications of the laser hardening process.
Registration and real-time visualization of transcranial magnetic stimulation with 3-D MR images.
Noirhomme, Quentin; Ferrant, Matthieu; Vandermeeren, Yves; Olivier, Etienne; Macq, Benoît; Cuisenaire, Olivier
2004-11-01
This paper describes a method for registering and visualizing in real-time the results of transcranial magnetic stimulations (TMS) in physical space on the corresponding anatomical locations in MR images of the brain. The method proceeds in three main steps. First, the patient scalp is digitized in physical space with a magnetic-field digitizer, following a specific digitization pattern. Second, a registration process minimizes the mean square distance between those points and a segmented scalp surface extracted from the magnetic resonance image. Following this registration, the physician can follow the change in coil position in real-time through the visualization interface and adjust the coil position to the desired anatomical location. Third, amplitude of motor evoked potentials can be projected onto the segmented brain in order to create functional brain maps. The registration has subpixel accuracy in a study with simulated data, while we obtain a point to surface root-mean-square error of 1.17+/-0.38 mm in a 24 subject study.
Real-time 3-D SAFT-UT system evaluation and validation
Doctor, S.R.; Schuster, G.J.; Reid, L.D.; Hall, T.E.
1996-09-01
SAFT-UT technology is shown to provide significant enhancements to the inspection of materials used in US nuclear power plants. This report provides guidelines for the implementation of SAFT-UT technology and shows the results from its application. An overview of the development of SAFT-UT is provided so that the reader may become familiar with the technology. Then the basic fundamentals are presented with an extensive list of references. A comprehensive operating procedure, which is used in conjunction with the SAFT-UT field system developed by Pacific Northwest Laboratory (PNL), provides the recipe for both SAFT data acquisition and analysis. The specification for the hardware implementation is provided for the SAFT-UT system along with a description of the subsequent developments and improvements. One development of technical interest is the SAFT real time processor. Performance of the real-time processor is impressive and comparison is made of this dedicated parallel processor to a conventional computer and to the newer high-speed computer architectures designed for image processing. Descriptions of other improvements, including a robotic scanner, are provided. Laboratory parametric and application studies, performed by PNL and not previously reported, are discussed followed by a section on field application work in which SAFT was used during inservice inspections of operating reactors.
Contribution of 3-D time-lapse ERT to the study of leachate recirculation in a landfill
Clement, R.; Oxarango, L.; Descloitres, M.
2011-03-15
Leachate recirculation is a key process in the operation of municipal waste landfills as bioreactors. It aims at increasing the moisture content to optimise the biodegradation. Because waste is a very heterogeneous and anisotropic porous media, the geometry of the leachate plume recirculation is difficult to delineate from the surface at the scale of the bioreactor site. In this study, 3-D time-lapse electrical resistivity tomography (ERT) was used to obtain useful information for understanding leachate recirculation hydrodynamics. The ERT inversion methodology and the electrode arrays were optimised using numerical modelling simulating a 3-D leachate injection scenario. Time-lapse ERT was subsequently applied at the field scale during an experimental injection. We compared ERT images with injected volumes to evaluate the sensitivity of time-lapse ERT to delineate the plume migration. The results show that time-lapse ERT can accomplish the following: (i) accurately locate the injection plume, delineating its depth and lateral extension; (ii) be used to estimate some hydraulic properties of waste.
An eliminating method of motion-induced vertical parallax for time-division 3D display technology
NASA Astrophysics Data System (ADS)
Lin, Liyuan; Hou, Chunping
2015-10-01
A time difference between the left image and right image of the time-division 3D display makes a person perceive alternating vertical parallax when an object is moving vertically on a fixed depth plane, which causes the left image and right image perceived do not match and makes people more prone to visual fatigue. This mismatch cannot eliminate simply rely on the precise synchronous control of the left image and right image. Based on the principle of time-division 3D display technology and human visual system characteristics, this paper establishes a model of the true vertical motion velocity in reality and vertical motion velocity on the screen, and calculates the amount of the vertical parallax caused by vertical motion, and then puts forward a motion compensation method to eliminate the vertical parallax. Finally, subjective experiments are carried out to analyze how the time difference affects the stereo visual comfort by comparing the comfort values of the stereo image sequences before and after compensating using the eliminating method. The theoretical analysis and experimental results show that the proposed method is reasonable and efficient.
Dubart, Philippe; Hautot, Felix; Morichi, Massimo; Abou-Khalil, Roger
2015-07-01
Good management of dismantling and decontamination (D and D) operations and activities is requiring safety, time saving and perfect radiological knowledge of the contaminated environment as well as optimization for personnel dose and minimization of waste volume. In the same time, Fukushima accident has imposed a stretch to the nuclear measurement operational approach requiring in such emergency situation: fast deployment and intervention, quick analysis and fast scenario definition. AREVA, as return of experience from his activities carried out at Fukushima and D and D sites has developed a novel multi-sensor solution as part of his D and D research, approach and method, a system with real-time 3D photo-realistic spatial radiation distribution cartography of contaminated premises. The system may be hand-held or mounted on a mobile device (robot, drone, e.g). In this paper, we will present our current development based on a SLAM technology (Simultaneous Localization And Mapping) and integrated sensors and detectors allowing simultaneous topographic and radiological (dose rate and/or spectroscopy) data acquisitions. This enabling technology permits 3D gamma activity cartography in real-time. (authors)
NASA Astrophysics Data System (ADS)
Wang, Dezhong; Zhuang, Tiange
2001-09-01
A real time nondestructive temperature measurement technique based on laser holographic interference tomography technique is presented. An He-Ne laser is used as light source, and a CCD video camera is used to grab the interferogram. This laser holographic tomography technique is applied to the measurement of the temperature fields generated by two heated rods. Since data error is inevitable in engineering measurement, it is necessary to study the reconstruction techniques for reconstructing the temperature field. Three techniques including convolution back projection (CBP), algebra reconstruction technique (ART) and simultaneous iterative reconstruction technique (SIRT) are studied. Based on the reconstruction techniques and experimental situation, ART is used to reconstruct the asymmetric temperature fields. The thermocouples are used to measure the temperatures of the two heated rods. Comparing the reconstructed result with the measured temperature value, a satisfactory result is obtained.
Real-Time Estimation of 3-D Needle Shape and Deflection for MRI-Guided Interventions
Park, Yong-Lae; Elayaperumal, Santhi; Daniel, Bruce; Ryu, Seok Chang; Shin, Mihye; Savall, Joan; Black, Richard J.; Moslehi, Behzad; Cutkosky, Mark R.
2015-01-01
We describe a MRI-compatible biopsy needle instrumented with optical fiber Bragg gratings for measuring bending deflections of the needle as it is inserted into tissues. During procedures, such as diagnostic biopsies and localized treatments, it is useful to track any tool deviation from the planned trajectory to minimize positioning errors and procedural complications. The goal is to display tool deflections in real time, with greater bandwidth and accuracy than when viewing the tool in MR images. A standard 18 ga × 15 cm inner needle is prepared using a fixture, and 350-μm-deep grooves are created along its length. Optical fibers are embedded in the grooves. Two sets of sensors, located at different points along the needle, provide an estimate of the bent profile, as well as temperature compensation. Tests of the needle in a water bath showed that it produced no adverse imaging artifacts when used with the MR scanner. PMID:26405428
Detection of hidden objects using a real-time 3-D millimeter-wave imaging system
NASA Astrophysics Data System (ADS)
Rozban, Daniel; Aharon, Avihai; Levanon, Assaf; Abramovich, Amir; Yitzhaky, Yitzhak; Kopeika, N. S.
2014-10-01
Millimeter (mm)and sub-mm wavelengths or terahertz (THz) band have several properties that motivate their use in imaging for security applications such as recognition of hidden objects, dangerous materials, aerosols, imaging through walls as in hostage situations, and also in bad weather conditions. There is no known ionization hazard for biological tissue, and atmospheric degradation of THz radiation is relatively low for practical imaging distances. We recently developed a new technology for the detection of THz radiation. This technology is based on very inexpensive plasma neon indicator lamps, also known as Glow Discharge Detector (GDD), that can be used as very sensitive THz radiation detectors. Using them, we designed and constructed a Focal Plane Array (FPA) and obtained recognizable2-dimensional THz images of both dielectric and metallic objects. Using THz wave it is shown here that even concealed weapons made of dielectric material can be detected. An example is an image of a knife concealed inside a leather bag and also under heavy clothing. Three-dimensional imaging using radar methods can enhance those images since it can allow the isolation of the concealed objects from the body and environmental clutter such as nearby furniture or other people. The GDDs enable direct heterodyning between the electric field of the target signal and the reference signal eliminating the requirement for expensive mixers, sources, and Low Noise Amplifiers (LNAs).We expanded the ability of the FPA so that we are able to obtain recognizable 2-dimensional THz images in real time. We show here that the THz detection of objects in three dimensions, using FMCW principles is also applicable in real time. This imaging system is also shown here to be capable of imaging objects from distances allowing standoff detection of suspicious objects and humans from large distances.
Gregersen, Tine; Haase, Anne-Mette; Schlageter, Vincent; Gronbaek, Henning; Krogh, Klaus
2015-01-01
Background/Aims The paucity of knowledge regarding gastrointestinal motility in patients with neuroendocrine tumors and carcinoid diarrhea restricts targeted treatment. 3D-Transit is a novel, minimally invasive, ambulatory method for description of gastrointestinal motility. The system has not yet been evaluated in any group of patients. We aimed to test the performance of 3D-Transit in patients with carcinoid diarrhea and to compare the patients’ regional gastrointestinal transit times (GITT) and colonic motility patterns with those of healthy subjects. Methods Fifteen healthy volunteers and seven patients with neuroendocrine tumor and at least 3 bowel movements per day were investigated with 3D-Transit and standard radiopaque markers. Results Total GITT assessed with 3D-Transit and radiopaque markers were well correlated (Spearman’s rho = 0.64, P = 0.002). Median total GITT was 12.5 (range: 8.5–47.2) hours in patients versus 25.1 (range: 13.1–142.3) hours in healthy (P = 0.007). There was no difference in gastric emptying (P = 0.778). Median small intestinal transit time was 3.8 (range: 1.4–5.5) hours in patients versus 4.4 (range: 1.8–7.2) hours in healthy subjects (P = 0.044). Median colorectal transit time was 5.2 (range: 2.9–40.1) hours in patients versus 18.1 (range: 5.0–134.0) hours in healthy subjects (P = 0.012). Median frequency of pansegmental colonic movements was 0.45 (range: 0.03–1.02) per hour in patients and 0.07 (range: 0–0.61) per hour in healthy subjects (P = 0.045). Conclusions Three-dimensional Transit allows assessment of regional GITT in patients with diarrhea. Patients with carcinoid diarrhea have faster than normal gastrointestinal transit due to faster small intestinal and colorectal transit times. The latter is caused by an increased frequency of pansegmental colonic movements. PMID:26130638
Chen, Alvin I.; Balter, Max L.; Maguire, Timothy J.; Yarmush, Martin L.
2016-01-01
This paper presents a portable imaging device designed to detect peripheral blood vessels for cannula insertion that are otherwise difficult to visualize beneath the skin. The device combines near infrared stereo vision, ultrasound, and real-time image analysis to map the 3D structure of subcutaneous vessels. We show that the device can identify adult forearm vessels and be used to guide manual insertions in tissue phantoms with increased first-stick accuracy compared to unassisted cannulation. We also demonstrate that the system may be coupled with a robotic manipulator to perform automated, image-guided venipuncture. PMID:27981261
Random center vortex lines in continuous 3D space-time
Höllwieser, Roman; Altarawneh, Derar; Engelhardt, Michael
2016-01-22
We present a model of center vortices, represented by closed random lines in continuous 2+1-dimensional space-time. These random lines are modeled as being piece-wise linear and an ensemble is generated by Monte Carlo methods. The physical space in which the vortex lines are defined is a cuboid with periodic boundary conditions. Besides moving, growing and shrinking of the vortex configuration, also reconnections are allowed. Our ensemble therefore contains not a fixed, but a variable number of closed vortex lines. This is expected to be important for realizing the deconfining phase transition. Using the model, we study both vortex percolation and the potential V(R) between quark and anti-quark as a function of distance R at different vortex densities, vortex segment lengths, reconnection conditions and at different temperatures. We have found three deconfinement phase transitions, as a function of density, as a function of vortex segment length, and as a function of temperature. The model reproduces the qualitative features of confinement physics seen in SU(2) Yang-Mills theory.
Left ventricular endocardial surface detection based on real-time 3D echocardiographic data
NASA Technical Reports Server (NTRS)
Corsi, C.; Borsari, M.; Consegnati, F.; Sarti, A.; Lamberti, C.; Travaglini, A.; Shiota, T.; Thomas, J. D.
2001-01-01
OBJECTIVE: A new computerized semi-automatic method for left ventricular (LV) chamber segmentation is presented. METHODS: The LV is imaged by real-time three-dimensional echocardiography (RT3DE). The surface detection model, based on level set techniques, is applied to RT3DE data for image analysis. The modified level set partial differential equation we use is solved by applying numerical methods for conservation laws. The initial conditions are manually established on some slices of the entire volume. The solution obtained for each slice is a contour line corresponding with the boundary between LV cavity and LV endocardium. RESULTS: The mathematical model has been applied to sequences of frames of human hearts (volume range: 34-109 ml) imaged by 2D and reconstructed off-line and RT3DE data. Volume estimation obtained by this new semi-automatic method shows an excellent correlation with those obtained by manual tracing (r = 0.992). Dynamic change of LV volume during the cardiac cycle is also obtained. CONCLUSION: The volume estimation method is accurate; edge based segmentation, image completion and volume reconstruction can be accomplished. The visualization technique also allows to navigate into the reconstructed volume and to display any section of the volume.
Levin, David; Aladl, Usaf; Germano, Guido; Slomka, Piotr
2005-09-01
We exploit consumer graphics hardware to perform real-time processing and visualization of high-resolution, 4D cardiac data. We have implemented real-time, realistic volume rendering, interactive 4D motion segmentation of cardiac data, visualization of multi-modality cardiac data and 3D display of multiple series cardiac MRI. We show that an ATI Radeon 9700 Pro can render a 512x512x128 cardiac Computed Tomography (CT) study at 0.9 to 60 frames per second (fps) depending on rendering parameters and that 4D motion based segmentation can be performed in real-time. We conclude that real-time rendering and processing of cardiac data can be implemented on consumer graphics cards.
NASA Astrophysics Data System (ADS)
Tobón, Luis E.; Ren, Qiang; Liu, Qing Huo
2015-02-01
A new Discontinuous Galerkin Time Domain (DGTD) method for solving the 3D time dependent Maxwell's equations via the electric field intensity E and magnetic flux density B fields is proposed for the first time. It uses curl-conforming and divergence-conforming basis functions for E and B, respectively, with the same order of interpolation. In this way, higher accuracy is achieved at lower memory consumption than the conventional approach based on the field variables E and H. The centered flux and Riemann solver are both used to treat interfaces with non-conforming meshes, and both explicit Runge-Kutta method and implicit Crank-Nicholson method are implemented for time integration. Numerical examples for realistic cases will be presented to verify that the proposed method is a non-spurious and efficient DGTD scheme.
NASA Astrophysics Data System (ADS)
Pouch, Alison M.; Yushkevich, Paul A.; Jackson, Benjamin M.; Gorman, Joseph H., III; Gorman, Robert C.; Sehgal, Chandra M.
2012-03-01
Purpose: Patient-specific shape analysis of the mitral valve from real-time 3D ultrasound (rt-3DUS) has broad application to the assessment and surgical treatment of mitral valve disease. Our goal is to demonstrate that continuous medial representation (cm-rep) is an accurate valve shape representation that can be used for statistical shape modeling over the cardiac cycle from rt-3DUS images. Methods: Transesophageal rt-3DUS data acquired from 15 subjects with a range of mitral valve pathology were analyzed. User-initialized segmentation with level sets and symmetric diffeomorphic normalization delineated the mitral leaflets at each time point in the rt-3DUS data series. A deformable cm-rep was fitted to each segmented image of the mitral leaflets in the time series, producing a 4D parametric representation of valve shape in a single cardiac cycle. Model fitting accuracy was evaluated by the Dice overlap, and shape interpolation and principal component analysis (PCA) of 4D valve shape were performed. Results: Of the 289 3D images analyzed, the average Dice overlap between each fitted cm-rep and its target segmentation was 0.880+/-0.018 (max=0.912, min=0.819). The results of PCA represented variability in valve morphology and localized leaflet thickness across subjects. Conclusion: Deformable medial modeling accurately captures valve geometry in rt-3DUS images over the entire cardiac cycle and enables statistical shape analysis of the mitral valve.
NASA Astrophysics Data System (ADS)
Obermann, Anne; Planès, Thomas; Hadziioannou, Céline; Campillo, Michel
2016-10-01
In the context of seismic monitoring, recent studies made successful use of seismic coda waves to locate medium changes on the horizontal plane. Locating the depth of the changes, however, remains a challenge. In this paper, we use 3-D wavefield simulations to address two problems: first, we evaluate the contribution of surface- and body-wave sensitivity to a change at depth. We introduce a thin layer with a perturbed velocity at different depths and measure the apparent relative velocity changes due to this layer at different times in the coda and for different degrees of heterogeneity of the model. We show that the depth sensitivity can be modelled as a linear combination of body- and surface-wave sensitivity. The lapse-time-dependent sensitivity ratio of body waves and surface waves can be used to build 3-D sensitivity kernels for imaging purposes. Second, we compare the lapse-time behaviour in the presence of a perturbation in horizontal and vertical slabs to address, for instance, the origin of the velocity changes detected after large earthquakes.
Povšič, K; Jezeršek, M; Možina, J
2015-07-01
Real-time 3D visualization of the breathing displacements can be a useful diagnostic tool in order to immediately observe the most active regions on the thoraco-abdominal surface. The developed method is capable of separating non-relevant torso movement and deformations from the deformations that are solely related to breathing. This makes it possible to visualize only the breathing displacements. The system is based on the structured laser triangulation principle, with simultaneous spatial and color data acquisition of the thoraco-abdominal region. Based on the tracking of the attached passive markers, the torso movement and deformation is compensated using rigid and non-rigid transformation models on the three-dimensional (3D) data. The total time of 3D data processing together with visualization equals 20 ms per cycle.In vitro verification of the rigid movement extraction was performed using the iterative closest point algorithm as a reference. Furthermore, a volumetric evaluation on a live subject was performed to establish the accuracy of the rigid and non-rigid model. The root mean square deviation between the measured and the reference volumes shows an error of ±0.08 dm(3) for rigid movement extraction. Similarly, the error was calculated to be ±0.02 dm(3) for torsional deformation extraction and ±0.11 dm(3) for lateral bending deformation extraction. The results confirm that during the torso movement and deformation, the proposed method is sufficiently accurate to visualize only the displacements related to breathing. The method can be used, for example, during the breathing exercise on an indoor bicycle or a treadmill.
SU-E-T-353: Effects of Time and Temperature On a Potential Reusable 3D Dosimeter
Juang, T; Miles, D; Crockett, E; Adamovics, J; Oldham, M
2015-06-15
Purpose: Preliminary studies of a novel, optically-clearing PRESAGE 3D dosimeter formulation (Presage-RU) demonstrated potential reusability. This study investigates the effects of time and temperature on the accuracy and reusability of Presage-RU, and reports on progress toward developing a reusable 3D dosimeter. Methods: Presage-RU was cast as small volume samples (1×1×4.5cm). The effect of dose response sensitivity with reirradiation and time was evaluated by irradiating samples from 0–10Gy, measuring change in optical density (ΔOD), clearing at room temperature (RT) (5–7 days to fully clear), and then repeating for a total of 5 irradiations. Effects of heating on clearing rate were investigated by irradiating samples to 8Gy, then tracking measurements with samples held at RT, 35°C, and 45°C. Two cylindrical dosimeters (11cm diameter, 9.5cm length) were evaluated for dosimetric accuracy when stored at RT and −3°C prior to irradiation. Plans delivered were 2 overlapping AP fields (RT) and VMAT (-3°C). Results: Heating the dosimeters reduced the clearing half-life from 16.3h at RT to 5.8h (35°C) and 5.1h (45°C), but also increased background ΔOD by 1.7x (35°C) and 2.3x (45°C). Reductions in dose response were more closely linked to age than reirradiation, and storage at RT showed pronounced desensitization from dosimeter edges. These results suggest desensitization from oxygen diffusion. It should be noted that atmospheric diffusion into the dosimeter is not seen in standard, single-use PRESAGE, and is likely caused by differences in the Presage-RU polyurethane matrix. The dosimeter kept in cold storage, however, showed no evidence of desensitization and exhibited accuracy on par with standard PRESAGE with a 3%/3mm 3D gamma passing rate of 98.1%. Conclusions: Presage-RU is sensitive to storage temperatures and time, both of which affect oxygen diffusion and subsequent desensitization. Development shows promising progress with further formulation
1D-3D hybrid modeling-from multi-compartment models to full resolution models in space and time.
Grein, Stephan; Stepniewski, Martin; Reiter, Sebastian; Knodel, Markus M; Queisser, Gillian
2014-01-01
Investigation of cellular and network dynamics in the brain by means of modeling and simulation has evolved into a highly interdisciplinary field, that uses sophisticated modeling and simulation approaches to understand distinct areas of brain function. Depending on the underlying complexity, these models vary in their level of detail, in order to cope with the attached computational cost. Hence for large network simulations, single neurons are typically reduced to time-dependent signal processors, dismissing the spatial aspect of each cell. For single cell or networks with relatively small numbers of neurons, general purpose simulators allow for space and time-dependent simulations of electrical signal processing, based on the cable equation theory. An emerging field in Computational Neuroscience encompasses a new level of detail by incorporating the full three-dimensional morphology of cells and organelles into three-dimensional, space and time-dependent, simulations. While every approach has its advantages and limitations, such as computational cost, integrated and methods-spanning simulation approaches, depending on the network size could establish new ways to investigate the brain. In this paper we present a hybrid simulation approach, that makes use of reduced 1D-models using e.g., the NEURON simulator-which couples to fully resolved models for simulating cellular and sub-cellular dynamics, including the detailed three-dimensional morphology of neurons and organelles. In order to couple 1D- and 3D-simulations, we present a geometry-, membrane potential- and intracellular concentration mapping framework, with which graph- based morphologies, e.g., in the swc- or hoc-format, are mapped to full surface and volume representations of the neuron and computational data from 1D-simulations can be used as boundary conditions for full 3D simulations and vice versa. Thus, established models and data, based on general purpose 1D-simulators, can be directly coupled to the
1D-3D hybrid modeling—from multi-compartment models to full resolution models in space and time
Grein, Stephan; Stepniewski, Martin; Reiter, Sebastian; Knodel, Markus M.; Queisser, Gillian
2014-01-01
Investigation of cellular and network dynamics in the brain by means of modeling and simulation has evolved into a highly interdisciplinary field, that uses sophisticated modeling and simulation approaches to understand distinct areas of brain function. Depending on the underlying complexity, these models vary in their level of detail, in order to cope with the attached computational cost. Hence for large network simulations, single neurons are typically reduced to time-dependent signal processors, dismissing the spatial aspect of each cell. For single cell or networks with relatively small numbers of neurons, general purpose simulators allow for space and time-dependent simulations of electrical signal processing, based on the cable equation theory. An emerging field in Computational Neuroscience encompasses a new level of detail by incorporating the full three-dimensional morphology of cells and organelles into three-dimensional, space and time-dependent, simulations. While every approach has its advantages and limitations, such as computational cost, integrated and methods-spanning simulation approaches, depending on the network size could establish new ways to investigate the brain. In this paper we present a hybrid simulation approach, that makes use of reduced 1D-models using e.g., the NEURON simulator—which couples to fully resolved models for simulating cellular and sub-cellular dynamics, including the detailed three-dimensional morphology of neurons and organelles. In order to couple 1D- and 3D-simulations, we present a geometry-, membrane potential- and intracellular concentration mapping framework, with which graph- based morphologies, e.g., in the swc- or hoc-format, are mapped to full surface and volume representations of the neuron and computational data from 1D-simulations can be used as boundary conditions for full 3D simulations and vice versa. Thus, established models and data, based on general purpose 1D-simulators, can be directly coupled to
A GRASS GIS based Spatio-Temporal Algebra for Raster-, 3D Raster- and Vector Time Series Data
NASA Astrophysics Data System (ADS)
Leppelt, Thomas; Gebbert, Sören
2015-04-01
Enhancing the well known and widely used map algebra proposed by Dr. Charles Dana Tomlin [1] with the time dimension is an ongoing research topic. The efficient processing of large time series of raster, 3D raster and vector datasets, e. g. raster datasets for temperature or precipitations on continental scale, requires a sophisticated spatio-temporal algebra that is capable of handling datasets with different temporal granularities and spatio-temporal extents. With the temporal enabled GRASS GIS [2] and the GRASS GIS Temporal Framework new spatio-temporal data types are available in GRASS GIS 7, called space time datasets. These space time datasets represent time series of raster, 3D raster and vector map layers. Furthermore the temporal framework provides a wide range of functionalities to support the implementation of a temporal algebra. While spatial capabilities of GRASS GIS are used to perform the spatial processing of the time stamped map layers that are registered in a space time dataset, the temporal processing is provided by the GRASS GIS temporal framework that supports time intervals and time instances. Mixing time instance and time intervals as well as gaps, overlapping or inclusion of intervals and instances is possible. Hence this framework allows an arbitrary layout of the time dimension. We implemented two ways to process space time datasets with arbitrary temporal layout, the temporal topology and the granularity based spatio-temporal algebra. The algebra provides the functionality to define complex spatio-temporal topological operators that process time and space in a single expression. The algebra includes methods to select map layers from space time datasets based on their temporal relations, to temporally shift time stamped map layers, to create temporal buffer and to snap time instances of time stamped map layers to create a valid temporal topology. In addition spatio-temporal operations can be evaluated within conditional statements. These
Development of CT and 3D-CT Using Flat Panel Detector Based Real-Time Digital Radiography System
Ravindran, V. R.; Sreelakshmi, C.; Vibin
2008-09-26
The application of Digital Radiography in the Nondestructive Evaluation (NDE) of space vehicle components is a recent development in India. A Real-time DR system based on amorphous silicon Flat Panel Detector has been developed for the NDE of solid rocket motors at Rocket Propellant Plant of VSSC in a few years back. The technique has been successfully established for the nondestructive evaluation of solid rocket motors. The DR images recorded for a few solid rocket specimens are presented in the paper. The Real-time DR system is capable of generating sufficient digital X-ray image data with object rotation for the CT image reconstruction. In this paper the indigenous development of CT imaging based on the Realtime DR system for solid rocket motor is presented. Studies are also carried out to generate 3D-CT image from a set of adjacent CT images of the rocket motor. The capability of revealing the spatial location and characterisation of defect is demonstrated by the CT and 3D-CT images generated.
NASA Astrophysics Data System (ADS)
Wang, Bo; Xiao, Jiaying; Jiang, Huabei
2014-08-01
Objective. Neurovascular coupling in epilepsy is poorly understood; its study requires simultaneous monitoring of hemodynamic changes and neural activity in the brain. Approach. Here for the first time we present a combined real-time 3D photoacoustic tomography (PAT) and electrophysiology/electroencephalography (EEG) system for the study of neurovascular coupling in epilepsy, whose ability was demonstrated with a pentylenetetrazol (PTZ) induced generalized seizure model in rats. Two groups of experiments were carried out with different wavelengths to detect the changes of oxy-hemoglobin (HbO2) and deoxy-hemoglobin (HbR) signals in the rat brain. We extracted the average PAT signals of the superior sagittal sinus (SSS), and compared them with the EEG signal. Main results. Results showed that the seizure process can be divided into three stages. A ‘dip’ lasting for 1-2 min in the first stage and the following hyperfusion in the second stage were observed. The HbO2 signal and the HbR signal were generally negatively correlated. The change of blood flow was also estimated. All the acquired results here were in accordance with other published results. Significance. Compared to other existing functional neuroimaging tools, the method proposed here enables reliable tracking of hemodynamic signal with both high spatial and high temporal resolution in 3D, so it is more suitable for neurovascular coupling study of epilepsy.
Development of CT and 3D-CT Using Flat Panel Detector Based Real-Time Digital Radiography System
NASA Astrophysics Data System (ADS)
Ravindran, V. R.; Sreelakshmi, C.; Vibin, Vibin
2008-09-01
The application of Digital Radiography in the Nondestructive Evaluation (NDE) of space vehicle components is a recent development in India. A Real-time DR system based on amorphous silicon Flat Panel Detector has been developed for the NDE of solid rocket motors at Rocket Propellant Plant of VSSC in a few years back. The technique has been successfully established for the nondestructive evaluation of solid rocket motors. The DR images recorded for a few solid rocket specimens are presented in the paper. The Real-time DR system is capable of generating sufficient digital X-ray image data with object rotation for the CT image reconstruction. In this paper the indigenous development of CT imaging based on the Realtime DR system for solid rocket motor is presented. Studies are also carried out to generate 3D-CT image from a set of adjacent CT images of the rocket motor. The capability of revealing the spatial location and characterisation of defect is demonstrated by the CT and 3D-CT images generated.
NASA Technical Reports Server (NTRS)
Bauer, F.; Shiota, T.; Qin, J. X.; White, R. D.; Thomas, J. D.
2001-01-01
The measurement of the left ventricular ejection fraction is important for the evaluation of cardiomyopathy and depends on the measurement of left ventricular volumes. There are no existing conventional echocardiographic means of measuring the true left atrial and ventricular volumes without mathematical approximations. The aim of this study was to test anew real time 3-dimensional echocardiographic system of calculating left atrial and ventricular volumes in 40 patients after in vitro validation. The volumes of the left atrium and ventricle acquired from real time 3-D echocardiography in the apical view, were calculated in 7 sections parallel to the surface of the probe and compared with atrial (10 patients) and ventricular (30 patients) volumes calculated by nuclear magnetic resonance with the simpson method and with volumes of water in balloons placed in a cistern. Linear regression analysis showed an excellent correlation between the real volume of water in the balloons and volumes given in real time 3-dimensional echocardiography (y = 0.94x + 5.5, r = 0.99, p < 0.001, D = -10 +/- 4.5 ml). A good correlation was observed between real time 3-dimensional echocardiography and nuclear magnetic resonance for the measurement of left atrial and ventricular volumes (y = 0.95x - 10, r = 0.91, p < 0.001, D = -14.8 +/- 19.5 ml and y = 0.87x + 10, r = 0.98, P < 0.001, D = -8.3 +/- 18.7 ml, respectively. The authors conclude that real time three-dimensional echocardiography allows accurate measurement of left heart volumes underlying the clinical potential of this new 3-D method.
Three-dimensional finite difference viscoelastic wave modelling including surface topography
NASA Astrophysics Data System (ADS)
Hestholm, Stig
1999-12-01
I have undertaken 3-D finite difference (FD) modelling of seismic scattering fromfree-surface topography. Exact free-surface boundary conditions for arbitrary 3-D topographies have been derived for the particle velocities. The boundary conditions are combined with a velocity-stress formulation of the full viscoelastic wave equations. A curved grid represents the physical medium and its upper boundary represents the free-surface topography. The wave equations are numerically discretized by an eighth-order FD method on a staggered grid in space, and a leap-frog technique and the Crank-Nicholson method in time. I simulate scattering from teleseismic P waves by using plane incident wave fronts and real topography from a 60 x 60 km area that includes the NORESS array of seismic receiver stations in southeastern Norway. Synthetic snapshots and seismograms of the wavefield show clear conversion from P to Rg (short-period fundamental-mode Rayleigh) waves in areas of rough topography, which is consistent with numerous observations. By parallelization on fast supercomputers, it is possible to model higher frequencies and/or larger areas than before.
NASA Astrophysics Data System (ADS)
Brissaud, Q.; Garcia, R.; Martin, R.; Komatitsch, D.
2015-12-01
The acoustic and gravity waves propagating in the planetary atmospheres have been studied intensively as markers of specific phenomena (tectonic events, explosions) or as contributors to the atmosphere dynamics. To get a better understanding of the physic behind these dynamic processes, both acoustic and gravity waves propagation should be modeled in an attenuating and windy 3D atmosphere from the ground to the upper thermosphere. Thus, In order to provide an efficient numerical tool at the regional or the global scale a high order finite difference time domain (FDTD) approach is proposed that relies on the linearized compressible Navier-Stokes equations (Landau 1959) with non constant physical parameters (density, viscosities and speed of sound) and background velocities (wind). One significant benefit from this code is its versatility. Indeed, it handles both acoustic and gravity waves in the same simulation that enables one to observe correlations between the two. Simulations will also be performed on 2D/3D realistic cases such as tsunamis in a full MSISE-00 atmosphere and gravity-wave generation through atmospheric explosions. Computations are validated by comparison to well-known analytical solutions based on dispersion relations in specific benchmark cases (atmospheric explosion and bottom displacement forcing).
Brounstein, Anna; Hacihaliloglu, Ilker; Guy, Pierre; Hodgson, Antony; Abugharbieh, Rafeef
2011-01-01
In order to use pre-operatively acquired computed tomography (CT) scans to guide surgical tool movements in orthopaedic surgery, the CT scan must first be registered to the patient's anatomy. Three-dimensional (3D) ultrasound (US) could potentially be used for this purpose if the registration process could be made sufficiently automatic, fast and accurate, but existing methods have difficulties meeting one or more of these criteria. We propose a near-real-time US-to-CT registration method that matches point clouds extracted from local phase images with points selected in part on the basis of local curvature. The point clouds are represented as Gaussian Mixture Models (GMM) and registration is achieved by minimizing the statistical dissimilarity between the GMMs using an L2 distance metric. We present quantitative and qualitative results on both phantom and clinical pelvis data and show a mean registration time of 2.11 s with a mean accuracy of 0.49 mm.
Ibrahim, El-Sayed H; Pooley, Robert A; Bridges, Mellena D; Cernigliaro, Joseph G; Haley, William E
2014-01-01
Computed tomography (CT) is the current gold standard for imaging kidney stones, albeit at the cost of radiation exposure. Conventional magnetic resonance imaging (MRI) sequences are insensitive to detecting the stones because of their appearance as a signal void. With the development of 2D ultra-short echo-time (UTE) MRI sequences, it becomes possible to image kidney stones in vitro. In this work, we optimize and implement a modified 3D UTE MRI sequence for imaging kidney stones embedded in agarose phantoms mimicking the kidney tissue and in urine phantoms at 3.0T. The proposed technique is capable of imaging the stones with high spatial resolution in a short scan time.
NASA Astrophysics Data System (ADS)
Benhamouche, Mehdi; Bernard, Laurent; Serhir, Mohammed; Pichon, Lionel; Lesselier, Dominique
2013-11-01
This paper proposes a criterion for locating obstacles by time reversal (TR) of electromagnetic (EM) waves based on the analysis of the density of EM energy map in time domain. Contrarily to a monochromatic study of the TR, the wide-band approach requires to determine the instant of the wave focus. This enables us to locate the focal spots that are indicative of the positions. The criterion proposed is compared to the inverse of the minimum entropy criterion as used in the literature [X. Xu, E.L. Miller, C.M. Rappaport, IEEE Trans. Geosci. Remote Sens. 41, 1804 (2003)]. An application for the localization of 3D metal targets is proposed using finite integration technique (FIT) as computational tool at the modeling stage. An experimental validation is presented for canonical three-dimensional configurations with two kinds of metal objects. Contribution to the Topical Issue "Numelec 2012", Edited by Adel Razek.
C-ME: A 3D Community-Based, Real-Time Collaboration Tool for Scientific Research and Training
Kolatkar, Anand; Kennedy, Kevin; Halabuk, Dan; Kunken, Josh; Marrinucci, Dena; Bethel, Kelly; Guzman, Rodney; Huckaby, Tim; Kuhn, Peter
2008-01-01
The need for effective collaboration tools is growing as multidisciplinary proteome-wide projects and distributed research teams become more common. The resulting data is often quite disparate, stored in separate locations, and not contextually related. Collaborative Molecular Modeling Environment (C-ME) is an interactive community-based collaboration system that allows researchers to organize information, visualize data on a two-dimensional (2-D) or three-dimensional (3-D) basis, and share and manage that information with collaborators in real time. C-ME stores the information in industry-standard databases that are immediately accessible by appropriate permission within the computer network directory service or anonymously across the internet through the C-ME application or through a web browser. The system addresses two important aspects of collaboration: context and information management. C-ME allows a researcher to use a 3-D atomic structure model or a 2-D image as a contextual basis on which to attach and share annotations to specific atoms or molecules or to specific regions of a 2-D image. These annotations provide additional information about the atomic structure or image data that can then be evaluated, amended or added to by other project members. PMID:18286178
Travel time calculation in regular 3D grid in local and regional scale using fast marching method
NASA Astrophysics Data System (ADS)
Polkowski, M.
2015-12-01
Local and regional 3D seismic velocity models of crust and sediments are very important for numerous technics like mantle and core tomography, localization of local and regional events and others. Most of those techniques require calculation of wave travel time through the 3D model. This can be achieved using multiple approaches from simple ray tracing to advanced full waveform calculation. In this study simple and efficient implementation of fast marching method is presented. This method provides more information than ray tracing and is much less complicated than methods like full waveform being the perfect compromise. Presented code is written in C++, well commented and is easy to modify for different types of studies. Additionally performance is widely discussed including possibilities of multithreading and massive parallelism like GPU. Source code will be published in 2016 as it is part of the PhD thesis. National Science Centre Poland provided financial support for this work via NCN grant DEC-2011/02/A/ST10/00284.
Lindsey, Brooks D.; Nicoletto, Heather A.; Bennett, Ellen R.; Laskowitz, Daniel T.; Smith, Stephen W.
2013-01-01
Ultrasound imaging has been proposed as a rapid, portable alternative imaging modality to examine stroke patients in pre-hospital or emergency room settings. However, in performing transcranial ultrasound examinations, 8%–29% of patients in a general population may present with window failure, in which case it is not possible to acquire clinically useful sonographic information through the temporal bone acoustic window. In this work, we describe the technical considerations, design and fabrication of low-frequency (1.2 MHz), large aperture (25.3 mm) sparse matrix array transducers for 3-D imaging in the event of window failure. These transducers are integrated into a system for real-time 3-D bilateral transcranial imaging—the ultrasound brain helmet—and color flow imaging capabilities at 1.2 MHz are directly compared with arrays operating at 1.8 MHz in a flow phantom with attenuation comparable to the in vivo case. Contrast-enhanced imaging allowed visualization of arteries of the Circle of Willis in 5 of 5 subjects and 8 of 10 sides of the head despite probe placement outside of the acoustic window. Results suggest that this type of transducer may allow acquisition of useful images either in individuals with poor windows or outside of the temporal acoustic window in the field. PMID:23415287
Lindsey, Brooks D; Nicoletto, Heather A; Bennett, Ellen R; Laskowitz, Daniel T; Smith, Stephen W
2013-04-01
Ultrasound imaging has been proposed as a rapid, portable alternative imaging modality to examine stroke patients in pre-hospital or emergency room settings. However, in performing transcranial ultrasound examinations, 8%-29% of patients in a general population may present with window failure, in which case it is not possible to acquire clinically useful sonographic information through the temporal bone acoustic window. In this work, we describe the technical considerations, design and fabrication of low-frequency (1.2 MHz), large aperture (25.3 mm) sparse matrix array transducers for 3-D imaging in the event of window failure. These transducers are integrated into a system for real-time 3-D bilateral transcranial imaging-the ultrasound brain helmet-and color flow imaging capabilities at 1.2 MHz are directly compared with arrays operating at 1.8 MHz in a flow phantom with attenuation comparable to the in vivo case. Contrast-enhanced imaging allowed visualization of arteries of the Circle of Willis in 5 of 5 subjects and 8 of 10 sides of the head despite probe placement outside of the acoustic window. Results suggest that this type of transducer may allow acquisition of useful images either in individuals with poor windows or outside of the temporal acoustic window in the field.
NASA Astrophysics Data System (ADS)
Li, P.; Turk, J.; Vu, Q.; Knosp, B.; Hristova-Veleva, S. M.; Lambrigtsen, B.; Poulsen, W. L.; Licata, S.
2009-12-01
NASA is planning a new field experiment, the Genesis and Rapid Intensification Processes (GRIP), in the summer of 2010 to better understand how tropical storms form and develop into major hurricanes. The DC-8 aircraft and the Global Hawk Unmanned Airborne System (UAS) will be deployed loaded with instruments for measurements including lightning, temperature, 3D wind, precipitation, liquid and ice water contents, aerosol and cloud profiles. During the field campaign, both the spaceborne and the airborne observations will be collected in real-time and integrated with the hurricane forecast models. This observation-model integration will help the campaign achieve its science goals by allowing team members to effectively plan the mission with current forecasts. To support the GRIP experiment, JPL developed a website for interactive visualization of all related remote-sensing observations in the GRIP’s geographical domain using the new Google Earth API. All the observations are collected in near real-time (NRT) with 2 to 5 hour latency. The observations include a 1KM blended Sea Surface Temperature (SST) map from GHRSST L2P products; 6-hour composite images of GOES IR; stability indices, temperature and vapor profiles from AIRS and AMSU-B; microwave brightness temperature and rain index maps from AMSR-E, SSMI and TRMM-TMI; ocean surface wind vectors, vorticity and divergence of the wind from QuikSCAT; the 3D precipitation structure from TRMM-PR and vertical profiles of cloud and precipitation from CloudSAT. All the NRT observations are collected from the data centers and science facilities at NASA and NOAA, subsetted, re-projected, and composited into hourly or daily data products depending on the frequency of the observation. The data products are then displayed on the 3D Google Earth plug-in at the JPL Tropical Cyclone Information System (TCIS) website. The data products offered by the TCIS in the Google Earth display include image overlays, wind vectors, clickable
NASA Astrophysics Data System (ADS)
Mulungye, Rachel M.; Lucas, Dan; Bustamante, Miguel D.
2016-02-01
We revisit, both numerically and analytically, the finite-time blowup of the infinite-energy solution of 3D Euler equations of stagnation-point-type introduced by Gibbon et al. (1999). By employing the method of mapping to regular systems, presented in Bustamante (2011) and extended to the symmetry-plane case by Mulungye et al. (2015), we establish a curious property of this solution that was not observed in early studies: before but near singularity time, the blowup goes from a fast transient to a slower regime that is well resolved spectrally, even at mid-resolutions of $512^2.$ This late-time regime has an atypical spectrum: it is Gaussian rather than exponential in the wavenumbers. The analyticity-strip width decays to zero in a finite time, albeit so slowly that it remains well above the collocation-point scale for all simulation times $t < T^* - 10^{-9000}$, where $T^*$ is the singularity time. Reaching such a proximity to singularity time is not possible in the original temporal variable, because floating point double precision ($\\approx 10^{-16}$) creates a `machine-epsilon' barrier. Due to this limitation on the \\emph{original} independent variable, the mapped variables now provide an improved assessment of the relevant blowup quantities, crucially with acceptable accuracy at an unprecedented closeness to the singularity time: $T^*- t \\approx 10^{-140}.$
Automated real-time search and analysis algorithms for a non-contact 3D profiling system
NASA Astrophysics Data System (ADS)
Haynes, Mark; Wu, Chih-Hang John; Beck, B. Terry; Peterman, Robert J.
2013-04-01
The purpose of this research is to develop a new means of identifying and extracting geometrical feature statistics from a non-contact precision-measurement 3D profilometer. Autonomous algorithms have been developed to search through large-scale Cartesian point clouds to identify and extract geometrical features. These algorithms are developed with the intent of providing real-time production quality control of cold-rolled steel wires. The steel wires in question are prestressing steel reinforcement wires for concrete members. The geometry of the wire is critical in the performance of the overall concrete structure. For this research a custom 3D non-contact profilometry system has been developed that utilizes laser displacement sensors for submicron resolution surface profiling. Optimizations in the control and sensory system allow for data points to be collected at up to an approximate 400,000 points per second. In order to achieve geometrical feature extraction and tolerancing with this large volume of data, the algorithms employed are optimized for parsing large data quantities. The methods used provide a unique means of maintaining high resolution data of the surface profiles while keeping algorithm running times within practical bounds for industrial application. By a combination of regional sampling, iterative search, spatial filtering, frequency filtering, spatial clustering, and template matching a robust feature identification method has been developed. These algorithms provide an autonomous means of verifying tolerances in geometrical features. The key method of identifying the features is through a combination of downhill simplex and geometrical feature templates. By performing downhill simplex through several procedural programming layers of different search and filtering techniques, very specific geometrical features can be identified within the point cloud and analyzed for proper tolerancing. Being able to perform this quality control in real time
Aydmer, A.A.; Chew, W.C.; Cui, T.J.; Wright, D.L.; Smith, D.V.; Abraham, J.D.
2001-01-01
A simple and efficient method for large scale three-dimensional (3-D) subsurface imaging of inhomogeneous background is presented. One-dimensional (1-D) multifrequency distorted Born iterative method (DBIM) is employed in the inversion. Simulation results utilizing synthetic scattering data are given. Calibration of the very early time electromagnetic (VETEM) experimental waveforms is detailed along with major problems encountered in practice and their solutions. This discussion is followed by the results of a large scale application of the method to the experimental data provided by the VETEM system of the U.S. Geological Survey. The method is shown to have a computational complexity that is promising for on-site inversion.
Incorporation of 3-D Scanning Lidar Data into Google Earth for Real-time Air Pollution Observation
NASA Astrophysics Data System (ADS)
Chiang, C.; Nee, J.; Das, S.; Sun, S.; Hsu, Y.; Chiang, H.; Chen, S.; Lin, P.; Chu, J.; Su, C.; Lee, W.; Su, L.; Chen, C.
2011-12-01
3-D Differential Absorption Scanning Lidar (DIASL) system has been designed with small size, light weight, and suitable for installation in various vehicles and places for monitoring of air pollutants and displays a detailed real-time temporal and spatial variability of trace gases via the Google Earth. The fast scanning techniques and visual information can rapidly identify the locations and sources of the polluted gases and assess the most affected areas. It is helpful for Environmental Protection Agency (EPA) to protect the people's health and abate the air pollution as quickly as possible. The distributions of the atmospheric pollutants and their relationship with local metrological parameters measured with ground based instruments will also be discussed. Details will be presented in the upcoming symposium.
NASA Astrophysics Data System (ADS)
Bertseva, E.; Singh, A. S. G.; Lekki, J.; Thévenaz, P.; Lekka, M.; Jeney, S.; Gremaud, G.; Puttini, S.; Nowak, W.; Dietler, G.; Forró, L.; Unser, M.; Kulik, A. J.
2009-07-01
A traditional photonic-force microscope (PFM) results in huge sets of data, which requires tedious numerical analysis. In this paper, we propose instead an analog signal processor to attain real-time capabilities while retaining the richness of the traditional PFM data. Our system is devoted to intracellular measurements and is fully interactive through the use of a haptic joystick. Using our specialized analog hardware along with a dedicated algorithm, we can extract the full 3D stiffness matrix of the optical trap in real time, including the off-diagonal cross-terms. Our system is also capable of simultaneously recording data for subsequent offline analysis. This allows us to check that a good correlation exists between the classical analysis of stiffness and our real-time measurements. We monitor the PFM beads using an optical microscope. The force-feedback mechanism of the haptic joystick helps us in interactively guiding the bead inside living cells and collecting information from its (possibly anisotropic) environment. The instantaneous stiffness measurements are also displayed in real time on a graphical user interface. The whole system has been built and is operational; here we present early results that confirm the consistency of the real-time measurements with offline computations.
NASA Technical Reports Server (NTRS)
Roback, VIncent E.; Amzajerdian, Farzin; Brewster, Paul F.; Barnes, Bruce W.; Kempton, Kevin S.; Reisse, Robert A.; Bulyshev, Alexander E.
2013-01-01
A second generation, compact, real-time, air-cooled 3-D imaging Flash Lidar sensor system, developed from a number of cutting-edge components from industry and NASA, is lab characterized and helicopter flight tested under the Autonomous Precision Landing and Hazard Detection and Avoidance Technology (ALHAT) project. The ALHAT project is seeking to develop a guidance, navigation, and control (GN&C) and sensing system based on lidar technology capable of enabling safe, precise crewed or robotic landings in challenging terrain on planetary bodies under any ambient lighting conditions. The Flash Lidar incorporates a 3-D imaging video camera based on Indium-Gallium-Arsenide Avalanche Photo Diode and novel micro-electronic technology for a 128 x 128 pixel array operating at a video rate of 20 Hz, a high pulse-energy 1.06 µm Neodymium-doped: Yttrium Aluminum Garnet (Nd:YAG) laser, a remote laser safety termination system, high performance transmitter and receiver optics with one and five degrees field-of-view (FOV), enhanced onboard thermal control, as well as a compact and self-contained suite of support electronics housed in a single box and built around a PC-104 architecture to enable autonomous operations. The Flash Lidar was developed and then characterized at two NASA-Langley Research Center (LaRC) outdoor laser test range facilities both statically and dynamically, integrated with other ALHAT GN&C subsystems from partner organizations, and installed onto a Bell UH-1H Iroquois "Huey" helicopter at LaRC. The integrated system was flight tested at the NASA-Kennedy Space Center (KSC) on simulated lunar approach to a custom hazard field consisting of rocks, craters, hazardous slopes, and safe-sites near the Shuttle Landing Facility runway starting at slant ranges of 750 m. In order to evaluate different methods of achieving hazard detection, the lidar, in conjunction with the ALHAT hazard detection and GN&C system, operates in both a narrow 1deg FOV raster
Finite Difference Elastic Wave Field Simulation On GPU
NASA Astrophysics Data System (ADS)
Hu, Y.; Zhang, W.
2011-12-01
Numerical modeling of seismic wave propagation is considered as a basic and important aspect in investigation of the Earth's structure, and earthquake phenomenon. Among various numerical methods, the finite-difference method is considered one of the most efficient tools for the wave field simulation. However, with the increment of computing scale, the power of computing has becoming a bottleneck. With the development of hardware, in recent years, GPU shows powerful computational ability and bright application prospects in scientific computing. Many works using GPU demonstrate that GPU is powerful . Recently, GPU has not be used widely in the simulation of wave field. In this work, we present forward finite difference simulation of acoustic and elastic seismic wave propagation in heterogeneous media on NVIDIA graphics cards with the CUDA programming language. We also implement perfectly matched layers on the graphics cards to efficiently absorb outgoing waves on the fictitious edges of the grid Simulations compared with the results on CPU platform shows reliable accuracy and remarkable efficiency. This work proves that GPU can be an effective platform for wave field simulation, and it can also be used as a practical tool for real-time strong ground motion simulation.
Viscoelastic Finite Difference Modeling Using Graphics Processing Units
NASA Astrophysics Data System (ADS)
Fabien-Ouellet, G.; Gloaguen, E.; Giroux, B.
2014-12-01
Full waveform seismic modeling requires a huge amount of computing power that still challenges today's technology. This limits the applicability of powerful processing approaches in seismic exploration like full-waveform inversion. This paper explores the use of Graphics Processing Units (GPU) to compute a time based finite-difference solution to the viscoelastic wave equation. The aim is to investigate whether the adoption of the GPU technology is susceptible to reduce significantly the computing time of simulations. The code presented herein is based on the freely accessible software of Bohlen (2002) in 2D provided under a General Public License (GNU) licence. This implementation is based on a second order centred differences scheme to approximate time differences and staggered grid schemes with centred difference of order 2, 4, 6, 8, and 12 for spatial derivatives. The code is fully parallel and is written using the Message Passing Interface (MPI), and it thus supports simulations of vast seismic models on a cluster of CPUs. To port the code from Bohlen (2002) on GPUs, the OpenCl framework was chosen for its ability to work on both CPUs and GPUs and its adoption by most of GPU manufacturers. In our implementation, OpenCL works in conjunction with MPI, which allows computations on a cluster of GPU for large-scale model simulations. We tested our code for model sizes between 1002 and 60002 elements. Comparison shows a decrease in computation time of more than two orders of magnitude between the GPU implementation run on a AMD Radeon HD 7950 and the CPU implementation run on a 2.26 GHz Intel Xeon Quad-Core. The speed-up varies depending on the order of the finite difference approximation and generally increases for higher orders. Increasing speed-ups are also obtained for increasing model size, which can be explained by kernel overheads and delays introduced by memory transfers to and from the GPU through the PCI-E bus. Those tests indicate that the GPU memory size
Zhou, Guangni; Zhu, Wenxin; Shen, Hao; Li, Yao; Zhang, Anfeng; Tamura, Nobumichi; Chen, Kai
2016-01-01
Synchrotron-based Laue microdiffraction has been widely applied to characterize the local crystal structure, orientation, and defects of inhomogeneous polycrystalline solids by raster scanning them under a micro/nano focused polychromatic X-ray probe. In a typical experiment, a large number of Laue diffraction patterns are collected, requiring novel data reduction and analysis approaches, especially for researchers who do not have access to fast parallel computing capabilities. In this article, a novel approach is developed by plotting the distributions of the average recorded intensity and the average filtered intensity of the Laue patterns. Visualization of the characteristic microstructural features is realized in real time during data collection. As an example, this method is applied to image key features such as microcracks, carbides, heat affected zone, and dendrites in a laser assisted 3D printed Ni-based superalloy, at a speed much faster than data collection. Such analytical approach remains valid for a wide range of crystalline solids, and therefore extends the application range of the Laue microdiffraction technique to problems where real-time decision-making during experiment is crucial (for instance time-resolved non-reversible experiments). PMID:27302087
NASA Astrophysics Data System (ADS)
Mulder, W. A.; Zhebel, E.; Minisini, S.
2014-02-01
We analyse the time-stepping stability for the 3-D acoustic wave equation, discretized on tetrahedral meshes. Two types of methods are considered: mass-lumped continuous finite elements and the symmetric interior-penalty discontinuous Galerkin method. Combining the spatial discretization with the leap-frog time-stepping scheme, which is second-order accurate and conditionally stable, leads to a fully explicit scheme. We provide estimates of its stability limit for simple cases, namely, the reference element with Neumann boundary conditions, its distorted version of arbitrary shape, the unit cube that can be partitioned into six tetrahedra with periodic boundary conditions and its distortions. The Courant-Friedrichs-Lewy stability limit contains an element diameter for which we considered different options. The one based on the sum of the eigenvalues of the spatial operator for the first-degree mass-lumped element gives the best results. It resembles the diameter of the inscribed sphere but is slightly easier to compute. The stability estimates show that the mass-lumped continuous and the discontinuous Galerkin finite elements of degree 2 have comparable stability conditions, whereas the mass-lumped elements of degree one and three allow for larger time steps.
NASA Astrophysics Data System (ADS)
Zhou, Guangni; Zhu, Wenxin; Shen, Hao; Li, Yao; Zhang, Anfeng; Tamura, Nobumichi; Chen, Kai
2016-06-01
Synchrotron-based Laue microdiffraction has been widely applied to characterize the local crystal structure, orientation, and defects of inhomogeneous polycrystalline solids by raster scanning them under a micro/nano focused polychromatic X-ray probe. In a typical experiment, a large number of Laue diffraction patterns are collected, requiring novel data reduction and analysis approaches, especially for researchers who do not have access to fast parallel computing capabilities. In this article, a novel approach is developed by plotting the distributions of the average recorded intensity and the average filtered intensity of the Laue patterns. Visualization of the characteristic microstructural features is realized in real time during data collection. As an example, this method is applied to image key features such as microcracks, carbides, heat affected zone, and dendrites in a laser assisted 3D printed Ni-based superalloy, at a speed much faster than data collection. Such analytical approach remains valid for a wide range of crystalline solids, and therefore extends the application range of the Laue microdiffraction technique to problems where real-time decision-making during experiment is crucial (for instance time-resolved non-reversible experiments).
3D Deep Learning for Multi-modal Imaging-Guided Survival Time Prediction of Brain Tumor Patients
Nie, Dong; Zhang, Han; Adeli, Ehsan; Liu, Luyan
2016-01-01
High-grade glioma is the most aggressive and severe brain tumor that leads to death of almost 50% patients in 1–2 years. Thus, accurate prognosis for glioma patients would provide essential guidelines for their treatment planning. Conventional survival prediction generally utilizes clinical information and limited handcrafted features from magnetic resonance images (MRI), which is often time consuming, laborious and subjective. In this paper, we propose using deep learning frameworks to automatically extract features from multi-modal preoperative brain images (i.e., T1 MRI, fMRI and DTI) of high-grade glioma patients. Specifically, we adopt 3D convolutional neural networks (CNNs) and also propose a new network architecture for using multi-channel data and learning supervised features. Along with the pivotal clinical features, we finally train a support vector machine to predict if the patient has a long or short overall survival (OS) time. Experimental results demonstrate that our methods can achieve an accuracy as high as 89.9% We also find that the learned features from fMRI and DTI play more important roles in accurately predicting the OS time, which provides valuable insights into functional neuro-oncological applications. PMID:28149967
3D Deep Learning for Multi-modal Imaging-Guided Survival Time Prediction of Brain Tumor Patients.
Nie, Dong; Zhang, Han; Adeli, Ehsan; Liu, Luyan; Shen, Dinggang
2016-10-01
High-grade glioma is the most aggressive and severe brain tumor that leads to death of almost 50% patients in 1-2 years. Thus, accurate prognosis for glioma patients would provide essential guidelines for their treatment planning. Conventional survival prediction generally utilizes clinical information and limited handcrafted features from magnetic resonance images (MRI), which is often time consuming, laborious and subjective. In this paper, we propose using deep learning frameworks to automatically extract features from multi-modal preoperative brain images (i.e., T1 MRI, fMRI and DTI) of high-grade glioma patients. Specifically, we adopt 3D convolutional neural networks (CNNs) and also propose a new network architecture for using multi-channel data and learning supervised features. Along with the pivotal clinical features, we finally train a support vector machine to predict if the patient has a long or short overall survival (OS) time. Experimental results demonstrate that our methods can achieve an accuracy as high as 89.9% We also find that the learned features from fMRI and DTI play more important roles in accurately predicting the OS time, which provides valuable insights into functional neuro-oncological applications.
Medical applications of fast 3D cameras in real-time image-guided radiotherapy (IGRT) of cancer
NASA Astrophysics Data System (ADS)
Li, Shidong; Li, Tuotuo; Geng, Jason
2013-03-01
Dynamic volumetric medical imaging (4DMI) has reduced motion artifacts, increased early diagnosis of small mobile tumors, and improved target definition for treatment planning. High speed cameras for video, X-ray, or other forms of sequential imaging allow a live tracking of external or internal movement useful for real-time image-guided radiation therapy (IGRT). However, none of 4DMI can track real-time organ motion and no camera has correlated with 4DMI to show volumetric changes. With a brief review of various IGRT techniques, we propose a fast 3D camera for live-video stereovision, an automatic surface-motion identifier to classify body or respiratory motion, a mechanical model for synchronizing the external surface movement with the internal target displacement by combination use of the real-time stereovision and pre-treatment 4DMI, and dynamic multi-leaf collimation for adaptive aiming the moving target. Our preliminary results demonstrate that the technique is feasible and efficient in IGRT of mobile targets. A clinical trial has been initiated for validation of its spatial and temporal accuracies and dosimetric impact for intensity-modulated RT (IMRT), volumetric-modulated arc therapy (VMAT), and stereotactic body radiotherapy (SBRT) of any mobile tumors. The technique can be extended for surface-guided stereotactic needle insertion in biopsy of small lung nodules.
A parallel algorithm for solving the 3d Schroedinger equation
Strickland, Michael; Yager-Elorriaga, David
2010-08-20
We describe a parallel algorithm for solving the time-independent 3d Schroedinger equation using the finite difference time domain (FDTD) method. We introduce an optimized parallelization scheme that reduces communication overhead between computational nodes. We demonstrate that the compute time, t, scales inversely with the number of computational nodes as t {proportional_to} (N{sub nodes}){sup -0.95} {sup {+-} 0.04}. This makes it possible to solve the 3d Schroedinger equation on extremely large spatial lattices using a small computing cluster. In addition, we present a new method for precisely determining the energy eigenvalues and wavefunctions of quantum states based on a symmetry constraint on the FDTD initial condition. Finally, we discuss the usage of multi-resolution techniques in order to speed up convergence on extremely large lattices.
NASA Astrophysics Data System (ADS)
Li, S.
2002-05-01
Taking advantage of the recent developments in groundwater modeling research and computer, image and graphics processing, and objected oriented programming technologies, Dr. Li and his research group have recently developed a comprehensive software system for unified deterministic and stochastic groundwater modeling. Characterized by a new real-time modeling paradigm and improved computational algorithms, the software simulates 3D unsteady flow and reactive transport in general groundwater formations subject to both systematic and "randomly" varying stresses and geological and chemical heterogeneity. The software system has following distinct features and capabilities: Interactive simulation and real time visualization and animation of flow in response to deterministic as well as stochastic stresses. Interactive, visual, and real time particle tracking, random walk, and reactive plume modeling in both systematically and randomly fluctuating flow. Interactive statistical inference, scattered data interpolation, regression, and ordinary and universal Kriging, conditional and unconditional simulation. Real-time, visual and parallel conditional flow and transport simulations. Interactive water and contaminant mass balance analysis and visual and real-time flux update. Interactive, visual, and real time monitoring of head and flux hydrographs and concentration breakthroughs. Real-time modeling and visualization of aquifer transition from confined to unconfined to partially de-saturated or completely dry and rewetting Simultaneous and embedded subscale models, automatic and real-time regional to local data extraction; Multiple subscale flow and transport models Real-time modeling of steady and transient vertical flow patterns on multiple arbitrarily-shaped cross-sections and simultaneous visualization of aquifer stratigraphy, properties, hydrological features (rivers, lakes, wetlands, wells, drains, surface seeps), and dynamically adjusted surface flooding area
NASA Astrophysics Data System (ADS)
Park, Young Woo; Guo, Bing; Mogensen, Monique; Wang, Kevin; Law, Meng; Liu, Brent
2010-03-01
When a patient is accepted in the emergency room suspected of stroke, time is of the utmost importance. The infarct brain area suffers irreparable damage as soon as three hours after the onset of stroke symptoms. A CT scan is one of standard first line of investigations with imaging and is crucial to identify and properly triage stroke cases. The availability of an expert Radiologist in the emergency environment to diagnose the stroke patient in a timely manner only increases the challenges within the clinical workflow. Therefore, a truly zero-footprint web-based system with powerful advanced visualization tools for volumetric imaging including 2D. MIP/MPR, 3D display can greatly facilitate this dynamic clinical workflow for stroke patients. Together with mobile technology, the proper visualization tools can be delivered at the point of decision anywhere and anytime. We will present a small pilot project to evaluate the use of mobile technologies using devices such as iPhones in evaluating stroke patients. The results of the evaluation as well as any challenges in setting up the system will also be discussed.
NASA Astrophysics Data System (ADS)
Bada, Adedayo; Wang, Qi; Alcaraz-Calero, Jose M.; Grecos, Christos
2016-04-01
This paper proposes a new approach to improving the application of 3D video rendering and streaming by jointly exploring and optimizing both cloud-based virtualization and web-based delivery. The proposed web service architecture firstly establishes a software virtualization layer based on QEMU (Quick Emulator), an open-source virtualization software that has be