Science.gov

Sample records for 3d kinematic study

  1. A 3D kinematic study of the northern ejecta `jet' of the Crab nebula

    NASA Astrophysics Data System (ADS)

    Black, Christine S.; Fesen, Robert A.

    2015-03-01

    We present moderate resolution [O III] λλ4959, 5007 line emission spectra of the Crab nebula's northern ejecta jet. These data along with an [O III] image of the Crab nebula were used to build three-dimensional kinematic maps of the jet and adjacent remnant nebulosity to better understand the jet's properties and thus its likely origin. We find the jet's systemic velocity to be +170 ± 15 km s-1 with radial velocities ranging from -190 to +480 km s-1. Our data indicate that the jet consists of thin filamentary walls (Vexp ≃ 40-75 km s-1), is virtually hollow in [O III] emission, and elliptical and funnel-like in shape rather than a straight cylindrical tube as previously thought. Examination of the Crab's 3D filamentary structure along the jet's base reveals a large and nearly emission-free opening in the remnant's thick outer ejecta shell. The jet's blueshifted and redshifted sides are surprisingly well defined and, like the jet's sharp western limb, appear radially aligned with the remnant's centre of expansion. These alignments, along with the opening in the nebula at the jet's base and proper motions indicating an expansion age in line with the 1054 supernova event, suggest a direct connection between the jet's formation and the Crab's radial expansion. While our analysis supports the scenario that the jet may simply represent the highest velocity material of the remnant's N-S bipolar expansion, the nature of this expansion asymmetry remains unclear.

  2. A 2D 3D registration with low dose radiographic system for in vivo kinematic studies.

    PubMed

    Jerbi, T; Burdin, V; Stindel, E; Roux, C

    2011-01-01

    The knowledge of the poses and the positions of the knee bones and prostheses is of a great interest in the orthopedic and biomechanical applications. In this context, we use an ultra low dose bi-planar radiographic system called EOS to acquire two radiographs of the studied bones in each position. In this paper, we develop a new method for 2D 3D registration based on the frequency domain to determine the poses and the positions during quasi static motion analysis for healthy and prosthetic knees. Data of two healthy knees and four knees with unicompartimental prosthesis performing three different poses (full extension, 30° and 60° of flexion) were used in this work. The results we obtained are in concordance with the clinical accuracy and with the accuracy reported in other previous studies.

  3. Study of human body: Kinematics and kinetics of a martial arts (Silat) performers using 3D-motion capture

    NASA Astrophysics Data System (ADS)

    Soh, Ahmad Afiq Sabqi Awang; Jafri, Mohd Zubir Mat; Azraai, Nur Zaidi

    2015-04-01

    The Interest in this studies of human kinematics goes back very far in human history drove by curiosity or need for the understanding the complexity of human body motion. To find new and accurate information about the human movement as the advance computing technology became available for human movement that can perform. Martial arts (silat) were chose and multiple type of movement was studied. This project has done by using cutting-edge technology which is 3D motion capture to characterize and to measure the motion done by the performers of martial arts (silat). The camera will detect the markers (infrared reflection by the marker) around the performer body (total of 24 markers) and will show as dot in the computer software. The markers detected were analyzing using kinematic kinetic approach and time as reference. A graph of velocity, acceleration and position at time,t (seconds) of each marker was plot. Then from the information obtain, more parameters were determined such as work done, momentum, center of mass of a body using mathematical approach. This data can be used for development of the effectiveness movement in martial arts which is contributed to the people in arts. More future works can be implemented from this project such as analysis of a martial arts competition.

  4. Stumbling reactions during perturbed walking: Neuromuscular reflex activity and 3-D kinematics of the trunk - A pilot study.

    PubMed

    Müller, Juliane; Müller, Steffen; Engel, Tilman; Reschke, Antje; Baur, Heiner; Mayer, Frank

    2016-04-11

    Reflex activity of the lower leg muscles involved when compensating for falls has already been thoroughly investigated. However, the trunk׳s role in this compensation strategy remains unclear. The purpose of this study, therefore, was to analyze the kinematics and muscle activity of the trunk during perturbed walking. Ten subjects (29 ± 3 yr;79 ± 11 cm;74 ± 14 kg) walked (1m/s) on a split-belt treadmill, while 5 randomly timed, right-sided perturbations (treadmill belt deceleration: 40 m/s(2)) were applied. Trunk muscle activity was assessed with a 12-lead-EMG. Trunk kinematics were measured with a 3D-motion analysis system (12 markers framing 3 segments: upper thoracic area (UTA), lower thoracic area (LTA), lumbar area (LA)). The EMG-RMS [%] (0-200 ms after perturbation) was analyzed and then normalized to the RMS of normal walking. The total range of motion (ROM;[°]) for the extension/flexion, lateral flexion and rotation of each segment were calculated. Individual kinematic differences between walking and stumbling [%; ROM] were also computed. Data analysis was conducted descriptively, followed by one- and two-way ANOVAs (α=0.05). Stumbling led to an increase in ROM, compared to unperturbed gait, in all segments and planes. These increases ranged between 107 ± 26% (UTA/rotation) and 262 ± 132% (UTS/lateral flexion), significant only in lateral flexion. EMG activity of the trunk was increased during stumbling (abdominal: 665 ± 283%; back: 501 ± 215%), without significant differences between muscles. Provoked stumbling leads to a measurable effect on the trunk, quantifiable by an increase in ROM and EMG activity, compared to normal walking. Greater abdominal muscle activity and ROM of lateral flexion may indicate a specific compensation pattern occurring during stumbling.

  5. In vivo kinematic study of the tarsal joints complex based on fluoroscopic 3D-2D registration technique.

    PubMed

    Chen Wang, M D; Geng, Xiang; Wang, Shaobai; Xin Ma, M D; Xu Wang, M D; Jiazhang Huang, M D; Chao Zhang, M D; Li Chen, M S; Yang, Junsheng; Wang, Kan

    2016-09-01

    The tarsal bones articulate with each other and demonstrate complicated kinematic characteristics. The in vivo motions of these tarsal joints during normal gait are still unclear. Seven healthy subjects were recruited and fourteen feet in total were tested in the current study. Three dimensional models of the tarsal bones were first created using CT scanning. Corresponding local 3D coordinate systems of each tarsal bone was subsequently established for 6DOF motion decompositions. The fluoroscopy system captured the lateral fluoroscopic images of the targeted tarsal region whilst the subject was walking. Seven key pose images during the stance phase were selected and 3D to 2D bone model registrations were performed on each image to determine joint positions. The 6DOF motions of each tarsal joint during gait were then obtained by connecting these positions together. The TNJ (talo-navicular joint) exhibited the largest ROMs (range of motion) on all rotational directions with 7.39±2.75°of dorsi/plantarflexion, 21.12±4.68°of inversion/eversion, and 16.11±4.44°of internal/external rotation. From heel strike to midstance, the TNJ, STJ (subtalar joint), and CCJ (calcaneao-cuboid joint) were associated with 5.97°, 5.04°, and 3.93°of dorsiflexion; 15.46°, 8.21°, and 5.82°of eversion; and 9.75°, 7.6°, and 4.99°of external rotation, respectively. Likewise, from midstance to heel off, the TNJ, STJ, and CCJ were associated with 6.39, 6.19°, and 4.47°of plantarflexion; 18.57°, 11.86°, and 6.32°of inversion and 13.95°, 9.66°, and 7.58°of internal rotation, respectively. In conclusion, among the tarsal joints, the TNJ exhibited the greatest rotational mobility. Synchronous and homodromous rotational motions were detected for TNJ, STJ, and CCJ during the stance phase.

  6. Spontaneous Facial Motility in Infancy: A 3D Kinematic Analysis

    PubMed Central

    Green, Jordan R.; Wilson, Erin M.

    2008-01-01

    Early spontaneous orofacial movements have rarely been studied experimentally, though the motor experiences gained from these behaviors may influence the development of motor skills emerging for speech. This investigation quantitatively describes developmental changes in silent, spontaneous lip and jaw movements from 1 to 12 months of age using optically based 3D motion capture technology. Twenty-nine typically developing infants at five ages (1, 5, 7, 9, and 12 months) were studied cross-sectionally. Infants exhibited spontaneous facial movements at all ages studied. Several age-related changes were detected in lip and jaw kinematics: the occurrence of spontaneous movements increased, movement speed increased, the duration of movement epochs decreased and movement coupling among different facial regions increased. Additionally, evidence for stereotypic movements was not strong. The present findings suggest that, during the first year of life, early spontaneous facial movements undergo significant developmental change in the direction of skill development for speech. PMID:16381029

  7. Measuring the Stellar Halo Velocity Anisotropy With 3D Kinematics

    NASA Astrophysics Data System (ADS)

    Cunningham, Emily C.; Deason, Alis J.; Guhathakurta, Puragra; Rockosi, Constance M.; van der Marel, Roeland P.; Sohn, S. Tony

    2016-08-01

    We present the first measurement of the anisotropy parameter β using 3D kinematic information outside of the solar neighborhood. Our sample consists of 13 Milky Way halo stars with measured proper motions and radial velocities in the line of sight of M31. Proper motions were measured using deep, multi-epoch HST imaging, and radial velocities were measured from Keck II/DEIMOS spectra. We measure β = -0.3-0.9 +0.4, which is consistent with isotropy, and inconsistent with measurements in the solar neighborhood. We suggest that this may be the kinematic signature of a relatively early, massive accretion event, or perhaps several such events.

  8. Complete 3D kinematics of upper extremity functional tasks.

    PubMed

    van Andel, Carolien J; Wolterbeek, Nienke; Doorenbosch, Caroline A M; Veeger, DirkJan H E J; Harlaar, Jaap

    2008-01-01

    Upper extremity (UX) movement analysis by means of 3D kinematics has the potential to become an important clinical evaluation method. However, no standardized protocol for clinical application has yet been developed, that includes the whole upper limb. Standardization problems include the lack of a single representative function, the wide range of motion of joints and the complexity of the anatomical structures. A useful protocol would focus on the functional status of the arm and particularly the orientation of the hand. The aim of this work was to develop a standardized measurement method for unconstrained movement analysis of the UX that includes hand orientation, for a set of functional tasks for the UX and obtain normative values. Ten healthy subjects performed four representative activities of daily living (ADL). In addition, six standard active range of motion (ROM) tasks were executed. Joint angles of the wrist, elbow, shoulder and scapula were analyzed throughout each ADL task and minimum/maximum angles were determined from the ROM tasks. Characteristic trajectories were found for the ADL tasks, standard deviations were generally small and ROM results were consistent with the literature. The results of this study could form the normative basis for the development of a 'UX analysis report' equivalent to the 'gait analysis report' and would allow for future comparisons with pediatric and/or pathologic movement patterns.

  9. Kinematics and flow fields in 3D around swimming lamprey using light field PIV

    NASA Astrophysics Data System (ADS)

    Lehn, Andrea M.; Techet, Alexandra H.

    2016-11-01

    The fully time-resolved 3D kinematics and flow field velocities around freely swimming sea lamprey are derived using 3D light field imaging PIV. Lighthill's Elongated Body Theory (EBT) predicts that swimmers with anguilliform kinematics likened to lamprey, and similarly eels, will exhibit relatively poor propulsive efficiency. However, previous experimental studies of eel locomotion utilizing 2D PIV suggest disagreement with EBT estimates of wake properties; although, the thrust force generated by such swimmers has yet to be fully resolved using 3D measurements. A light field imaging array of multiple high-speed cameras is used to perform 3D synthetic aperture PIV around ammocoete sea lamprey (Petromyzon marinus). Fluid mechanics equations are used to determine thrust force generation, leading experimental studies closer to underpinning the physical mechanisms that enable aquatic locomotion of long, slender undulatory swimmers.

  10. Accurate 3D kinematic measurement of temporomandibular joint using X-ray fluoroscopic images

    NASA Astrophysics Data System (ADS)

    Yamazaki, Takaharu; Matsumoto, Akiko; Sugamoto, Kazuomi; Matsumoto, Ken; Kakimoto, Naoya; Yura, Yoshiaki

    2014-04-01

    Accurate measurement and analysis of 3D kinematics of temporomandibular joint (TMJ) is very important for assisting clinical diagnosis and treatment of prosthodontics and orthodontics, and oral surgery. This study presents a new 3D kinematic measurement technique of the TMJ using X-ray fluoroscopic images, which can easily obtain the TMJ kinematic data in natural motion. In vivo kinematics of the TMJ (maxilla and mandibular bone) is determined using a feature-based 2D/3D registration, which uses beads silhouette on fluoroscopic images and 3D surface bone models with beads. The 3D surface models of maxilla and mandibular bone with beads were created from CT scans data of the subject using the mouthpiece with the seven strategically placed beads. In order to validate the accuracy of pose estimation for the maxilla and mandibular bone, computer simulation test was performed using five patterns of synthetic tantalum beads silhouette images. In the clinical applications, dynamic movement during jaw opening and closing was conducted, and the relative pose of the mandibular bone with respect to the maxilla bone was determined. The results of computer simulation test showed that the root mean square errors were sufficiently smaller than 1.0 mm and 1.0 degree. In the results of clinical application, during jaw opening from 0.0 to 36.8 degree of rotation, mandibular condyle exhibited 19.8 mm of anterior sliding relative to maxillary articular fossa, and these measurement values were clinically similar to the previous reports. Consequently, present technique was thought to be suitable for the 3D TMJ kinematic analysis.

  11. Market study: 3-D eyetracker

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.

  12. Numerical model of sonic boom in 3D kinematic turbulence

    NASA Astrophysics Data System (ADS)

    Coulouvrat, François; Luquet, David; Marchiano, Régis

    2015-10-01

    Sonic boom is one of the key issues to be considered in the development of future supersonic or hypersonic civil aircraft concepts. The classical sonic boom, typical for Concorde with an N-wave shape and a ground amplitude of the order of 100 Pa, prevents overland flight. Future concepts target carefully shaped sonic booms with low amplitude weak shocks. However, sonic boom when perceived at the ground level is influenced not only by the aircraft characteristics, but also by atmospheric propagation. In particular, the effect of atmospheric turbulence on sonic boom propagation near the ground is not well characterized. Flight tests performed as early as the 1960s demonstrated that classical sonic booms are sensitive to atmospheric turbulence. However, this sensitivity remains only partially understood. This is related to the fact that i) turbulence is a random process that requires a statistical approach, ii) standard methods used to predict sonic booms, mainly geometrical acoustics based on ray tracing, are inadequate within the turbulent planetary boundary layer. Moreover, the ray theory fails to predict the acoustical field in many areas of interest, such as caustics or shadow zones. These zones are of major interest for sonic boom acceptability (highest levels, lateral extent of zone of impact). These limitations outline the need for a numerical approach that is sufficiently efficient to perform a large number of realizations for a statistical approach, but that goes beyond the limitations of ray theory. With this in view, a 3D one-way numerical method solving a nonlinear scalar wave equation established for heterogeneous, moving and absorbing atmosphere, is used to assess the effects of a 3D kinematic turbulence on sonic boom in various configurations. First, a plane N-wave is propagated in the free field through random realizations of kinematic fluctuations. Then the case of a more realistic Atmospheric Boundary Layer (ABL) is investigated, with a mean

  13. Bore-Sight Calibration of Multiple Laser Range Finders for Kinematic 3D Laser Scanning Systems.

    PubMed

    Jung, Jaehoon; Kim, Jeonghyun; Yoon, Sanghyun; Kim, Sangmin; Cho, Hyoungsig; Kim, Changjae; Heo, Joon

    2015-05-04

    The Simultaneous Localization and Mapping (SLAM) technique has been used for autonomous navigation of mobile systems; now, its applications have been extended to 3D data acquisition of indoor environments. In order to reconstruct 3D scenes of indoor space, the kinematic 3D laser scanning system, developed herein, carries three laser range finders (LRFs): one is mounted horizontally for system-position correction and the other two are mounted vertically to collect 3D point-cloud data of the surrounding environment along the system's trajectory. However, the kinematic laser scanning results can be impaired by errors resulting from sensor misalignment. In the present study, the bore-sight calibration of multiple LRF sensors was performed using a specially designed double-deck calibration facility, which is composed of two half-circle-shaped aluminum frames. Moreover, in order to automatically achieve point-to-point correspondences between a scan point and the target center, a V-shaped target was designed as well. The bore-sight calibration parameters were estimated by a constrained least squares method, which iteratively minimizes the weighted sum of squares of residuals while constraining some highly-correlated parameters. The calibration performance was analyzed by means of a correlation matrix. After calibration, the visual inspection of mapped data and residual calculation confirmed the effectiveness of the proposed calibration approach.

  14. Bore-Sight Calibration of Multiple Laser Range Finders for Kinematic 3D Laser Scanning Systems

    PubMed Central

    Jung, Jaehoon; Kim, Jeonghyun; Yoon, Sanghyun; Kim, Sangmin; Cho, Hyoungsig; Kim, Changjae; Heo, Joon

    2015-01-01

    The Simultaneous Localization and Mapping (SLAM) technique has been used for autonomous navigation of mobile systems; now, its applications have been extended to 3D data acquisition of indoor environments. In order to reconstruct 3D scenes of indoor space, the kinematic 3D laser scanning system, developed herein, carries three laser range finders (LRFs): one is mounted horizontally for system-position correction and the other two are mounted vertically to collect 3D point-cloud data of the surrounding environment along the system’s trajectory. However, the kinematic laser scanning results can be impaired by errors resulting from sensor misalignment. In the present study, the bore-sight calibration of multiple LRF sensors was performed using a specially designed double-deck calibration facility, which is composed of two half-circle-shaped aluminum frames. Moreover, in order to automatically achieve point-to-point correspondences between a scan point and the target center, a V-shaped target was designed as well. The bore-sight calibration parameters were estimated by a constrained least squares method, which iteratively minimizes the weighted sum of squares of residuals while constraining some highly-correlated parameters. The calibration performance was analyzed by means of a correlation matrix. After calibration, the visual inspection of mapped data and residual calculation confirmed the effectiveness of the proposed calibration approach. PMID:25946627

  15. Effect of Kayak Ergometer Elastic Tension on Upper Limb EMG Activity and 3D Kinematics.

    PubMed

    Fleming, Neil; Donne, Bernard; Fletcher, David

    2012-01-01

    Despite the prevalence of shoulder injury in kayakers, limited published research examining associated upper limb kinematics and recruitment patterns exists. Altered muscle recruitment patterns on-ergometer vs. on-water kayaking were recently reported, however, mechanisms underlying changes remain to be elucidated. The current study assessed the effect of ergometer recoil tension on upper limb recruitment and kinematics during the kayak stroke. Male kayakers (n = 10) performed 4 by 1 min on-ergometer exercise bouts at 85%VO2max at varying elastic recoil tension; EMG, stroke force and three-dimensional 3D kinematic data were recorded. While stationary recoil forces significantly increased across investigated tensions (125% increase, p < 0.001), no significant differences were detected in assessed force variables during the stroke cycle. In contrast, increasing tension induced significantly higher Anterior Deltoid (AD) activity in the latter stages (70 to 90%) of the cycle (p < 0.05). No significant differences were observed across tension levels for Triceps Brachii or Latissimus Dorsi. Kinematic analysis revealed that overhead arm movements accounted for 39 ± 16% of the cycle. Elbow angle at stroke cycle onset was 144 ± 10°; maximal elbow angle (151 ± 7°) occurred at 78 ± 10% into the cycle. All kinematic markers moved to a more anterior position as tension increased. No significant change in wrist marker elevation was observed, while elbow and shoulder marker elevations significantly increased across tension levels (p < 0.05). In conclusion, data suggested that kayakers maintained normal upper limb kinematics via additional AD recruitment despite ergometer induced recoil forces. Key pointsKayak ergometer elastic tension significantly alters Anterior Deltoid recruitment patterns.Kayakers maintain optimal arm kinematics despite changing external forces via altered shoulder muscle recruitment.Overhead arm movements account for a high proportion of the kayak

  16. Effect of Kayak Ergometer Elastic Tension on Upper Limb EMG Activity and 3D Kinematics

    PubMed Central

    Fleming, Neil; Donne, Bernard; Fletcher, David

    2012-01-01

    Despite the prevalence of shoulder injury in kayakers, limited published research examining associated upper limb kinematics and recruitment patterns exists. Altered muscle recruitment patterns on-ergometer vs. on-water kayaking were recently reported, however, mechanisms underlying changes remain to be elucidated. The current study assessed the effect of ergometer recoil tension on upper limb recruitment and kinematics during the kayak stroke. Male kayakers (n = 10) performed 4 by 1 min on-ergometer exercise bouts at 85%VO2max at varying elastic recoil tension; EMG, stroke force and three-dimensional 3D kinematic data were recorded. While stationary recoil forces significantly increased across investigated tensions (125% increase, p < 0.001), no significant differences were detected in assessed force variables during the stroke cycle. In contrast, increasing tension induced significantly higher Anterior Deltoid (AD) activity in the latter stages (70 to 90%) of the cycle (p < 0.05). No significant differences were observed across tension levels for Triceps Brachii or Latissimus Dorsi. Kinematic analysis revealed that overhead arm movements accounted for 39 ± 16% of the cycle. Elbow angle at stroke cycle onset was 144 ± 10°; maximal elbow angle (151 ± 7°) occurred at 78 ± 10% into the cycle. All kinematic markers moved to a more anterior position as tension increased. No significant change in wrist marker elevation was observed, while elbow and shoulder marker elevations significantly increased across tension levels (p < 0.05). In conclusion, data suggested that kayakers maintained normal upper limb kinematics via additional AD recruitment despite ergometer induced recoil forces. Key pointsKayak ergometer elastic tension significantly alters Anterior Deltoid recruitment patterns.Kayakers maintain optimal arm kinematics despite changing external forces via altered shoulder muscle recruitment.Overhead arm movements account for a high proportion of the kayak

  17. A Theoretical Study of the Build-up of the Sun’s Polar Magnetic Field by using a 3D Kinematic Dynamo Model

    NASA Astrophysics Data System (ADS)

    Hazra, Gopal; Choudhuri, Arnab Rai; Miesch, Mark S.

    2017-01-01

    We develop a three-dimensional kinematic self-sustaining model of the solar dynamo in which the poloidal field generation is from tilted bipolar sunspot pairs placed on the solar surface above regions of strong toroidal field by using the SpotMaker algorithm, and then the transport of this poloidal field to the tachocline is primarily caused by turbulent diffusion. We obtain a dipolar solution within a certain range of parameters. We use this model to study the build-up of the polar magnetic field and show that some insights obtained from surface flux transport models have to be revised. We present results obtained by putting a single bipolar sunspot pair in a hemisphere and two symmetrical sunspot pairs in two hemispheres. We find that the polar fields produced by them disappear due to the upward advection of poloidal flux at low latitudes, which emerges as oppositely signed radial flux and which is then advected poleward by the meridional flow. We also study the effect that a large sunspot pair, violating Hale’s polarity law, would have on the polar field. We find that there would be some effect—especially if the anti-Hale pair appears at high latitudes in the mid-phase of the cycle—though the effect is not very dramatic.

  18. The valuable use of Microsoft Kinect™ sensor 3D kinematic in the rehabilitation process in basketball

    NASA Astrophysics Data System (ADS)

    Braidot, Ariel; Favaretto, Guillermo; Frisoli, Melisa; Gemignani, Diego; Gumpel, Gustavo; Massuh, Roberto; Rayan, Josefina; Turin, Matías

    2016-04-01

    Subjects who practice sports either as professionals or amateurs, have a high incidence of knee injuries. There are a few publications that show studies from a kinematic point of view of lateral-structure-knee injuries, including meniscal (meniscal tears or chondral injury), without anterior cruciate ligament rupture. The use of standard motion capture systems for measuring outdoors sport is hard to implement due to many operative reasons. Recently released, the Microsoft Kinect™ is a sensor that was developed to track movements for gaming purposes and has seen an increased use in clinical applications. The fact that this device is a simple and portable tool allows the acquisition of data of sport common movements in the field. The development and testing of a set of protocols for 3D kinematic measurement using the Microsoft Kinect™ system is presented in this paper. The 3D kinematic evaluation algorithms were developed from information available and with the use of Microsoft’s Software Development Kit 1.8 (SDK). Along with this, an algorithm for calculating the lower limb joints angles was implemented. Thirty healthy adult volunteers were measured, using five different recording protocols for sport characteristic gestures which involve high knee injury risk in athletes.

  19. Reproducibility of 3D kinematics and surface electromyography measurements of mastication.

    PubMed

    Remijn, Lianne; Groen, Brenda E; Speyer, Renée; van Limbeek, Jacques; Nijhuis-van der Sanden, Maria W G

    2016-03-01

    The aim of this study was to determine the measurement reproducibility for a procedure evaluating the mastication process and to estimate the smallest detectable differences of 3D kinematic and surface electromyography (sEMG) variables. Kinematics of mandible movements and sEMG activity of the masticatory muscles were obtained over two sessions with four conditions: two food textures (biscuit and bread) of two sizes (small and large). Twelve healthy adults (mean age 29.1 years) completed the study. The second to the fifth chewing cycle of 5 bites were used for analyses. The reproducibility per outcome variable was calculated with an intraclass correlation coefficient (ICC) and a Bland-Altman analysis was applied to determine the standard error of measurement relative error of measurement and smallest detectable differences of all variables. ICCs ranged from 0.71 to 0.98 for all outcome variables. The outcome variables consisted of four bite and fourteen chewing cycle variables. The relative standard error of measurement of the bite variables was up to 17.3% for 'time-to-swallow', 'time-to-transport' and 'number of chewing cycles', but ranged from 31.5% to 57.0% for 'change of chewing side'. The relative standard error of measurement ranged from 4.1% to 24.7% for chewing cycle variables and was smaller for kinematic variables than sEMG variables. In general, measurements obtained with 3D kinematics and sEMG are reproducible techniques to assess the mastication process. The duration of the chewing cycle and frequency of chewing were the best reproducible measurements. Change of chewing side could not be reproduced. The published measurement error and smallest detectable differences will aid the interpretation of the results of future clinical studies using the same study variables.

  20. 3D Kinematics and Hydrodynamic Analysis of Freely Swimming Cetacean

    NASA Astrophysics Data System (ADS)

    Ren, Yan; Sheinberg, Dustin; Liu, Geng; Dong, Haibo; Fish, Frank; Javed, Joveria

    2015-11-01

    It's widely thought that flexibility and the ability to control flexibility are crucial elements in determining the performance of animal swimming. However, there is a lack of quantification of both span-wise and chord-wise deformation of Cetacean's flukes and associated hydrodynamic performance during actively swimming. To fill this gap, we examined the motion and flexure of both dolphin fluke and orca fluke in steady swimming using a combined experimental and computational approach. It is found that the fluke surface morphing can effectively modulate the flow structures and influence the propulsive performance. Findings from this work are fundamental for understanding key kinematic features of effective Cetacean propulsors, and for quantifying the hydrodynamic force production that naturally occurs during different types of swimming. This work is supported by ONR MURI N00014-14-1-0533 and NSF CBET-1313217.

  1. The influence of 3D kinematic and electromyographical parameters on cycling economy.

    PubMed

    Sinclair, Jonathan; Hebron, Jack; Atkins, Stephen; Hurst, Howard; Taylor, Paul J

    2014-01-01

    Economy is considered to be a key factor for the determination of performance in endurance events such as cycling. There have been no investigations which have related cycling economy to simultaneous measurements of 3D kinematics and muscular activation. This study examined selected biomechanical and neuromuscular parameters which have the strongest association with cycling economy. Twenty-five trained cyclists (31.27 ± 3.19 years) completed steady state cycling time trials at a workload of 180 W. Simultaneous measurements of 3D kinematics and electromyographical parameters were obtained. Continuous measurements of expired gases were used to provide a measure of cycling economy. A multiple regression analysis showed that key parameters of peak knee extension velocity and mean activity of the rectus femoris muscles were significant predictors of VO2 during steady state cycling (P < 0.01). This study has documented the key biomechanical parameters pertinent to cycling economy. As economy has been shown to influence aerobic performance, future work should focus on optimising these parameters to improve cycling economy.

  2. pynoddy 1.0: an experimental platform for automated 3-D kinematic and potential field modelling

    NASA Astrophysics Data System (ADS)

    Florian Wellmann, J.; Thiele, Sam T.; Lindsay, Mark D.; Jessell, Mark W.

    2016-03-01

    We present a novel methodology for performing experiments with subsurface structural models using a set of flexible and extensible Python modules. We utilize the ability of kinematic modelling techniques to describe major deformational, tectonic, and magmatic events at low computational cost to develop experiments testing the interactions between multiple kinematic events, effect of uncertainty regarding event timing, and kinematic properties. These tests are simple to implement and perform, as they are automated within the Python scripting language, allowing the encapsulation of entire kinematic experiments within high-level class definitions and fully reproducible results. In addition, we provide a link to geophysical potential-field simulations to evaluate the effect of parameter uncertainties on maps of gravity and magnetics. We provide relevant fundamental information on kinematic modelling and our implementation, and showcase the application of our novel methods to investigate the interaction of multiple tectonic events on a pre-defined stratigraphy, the effect of changing kinematic parameters on simulated geophysical potential fields, and the distribution of uncertain areas in a full 3-D kinematic model, based on estimated uncertainties in kinematic input parameters. Additional possibilities for linking kinematic modelling to subsequent process simulations are discussed, as well as additional aspects of future research. Our modules are freely available on github, including documentation and tutorial examples, and we encourage the contribution to this project.

  3. pynoddy 1.0: an experimental platform for automated 3-D kinematic and potential field modelling

    NASA Astrophysics Data System (ADS)

    Wellmann, J. F.; Thiele, S. T.; Lindsay, M. D.; Jessell, M. W.

    2015-11-01

    We present a novel methodology for performing experiments with subsurface structural models using a set of flexible and extensible Python modules. We utilise the ability of kinematic modelling techniques to describe major deformational, tectonic, and magmatic events at low computational cost to develop experiments testing the interactions between multiple kinematic events, effect of uncertainty regarding event timing, and kinematic properties. These tests are simple to implement and perform, as they are automated within the Python scripting language, allowing the encapsulation of entire kinematic experiments within high-level class definitions and fully reproducible results. In addition, we provide a~link to geophysical potential-field simulations to evaluate the effect of parameter uncertainties on maps of gravity and magnetics. We provide relevant fundamental information on kinematic modelling and our implementation, and showcase the application of our novel methods to investigate the interaction of multiple tectonic events on a pre-defined stratigraphy, the effect of changing kinematic parameters on simulated geophysical potential-fields, and the distribution of uncertain areas in a full 3-D kinematic model, based on estimated uncertainties in kinematic input parameters. Additional possibilities for linking kinematic modelling to subsequent process simulations are discussed, as well as additional aspects of future research. Our modules are freely available on github, including documentation and tutorial examples, and we encourage the contribution to this project.

  4. 3D Motion Planning Algorithms for Steerable Needles Using Inverse Kinematics

    PubMed Central

    Duindam, Vincent; Xu, Jijie; Alterovitz, Ron; Sastry, Shankar; Goldberg, Ken

    2010-01-01

    Steerable needles can be used in medical applications to reach targets behind sensitive or impenetrable areas. The kinematics of a steerable needle are nonholonomic and, in 2D, equivalent to a Dubins car with constant radius of curvature. In 3D, the needle can be interpreted as an airplane with constant speed and pitch rate, zero yaw, and controllable roll angle. We present a constant-time motion planning algorithm for steerable needles based on explicit geometric inverse kinematics similar to the classic Paden-Kahan subproblems. Reachability and path competitivity are analyzed using analytic comparisons with shortest path solutions for the Dubins car (for 2D) and numerical simulations (for 3D). We also present an algorithm for local path adaptation using null-space results from redundant manipulator theory. Finally, we discuss several ways to use and extend the inverse kinematics solution to generate needle paths that avoid obstacles. PMID:21359051

  5. 3D kinematics using dual quaternions: theory and applications in neuroscience

    PubMed Central

    Leclercq, Guillaume; Lefèvre, Philippe; Blohm, Gunnar

    2013-01-01

    In behavioral neuroscience, many experiments are developed in 1 or 2 spatial dimensions, but when scientists tackle problems in 3-dimensions (3D), they often face problems or new challenges. Results obtained for lower dimensions are not always extendable in 3D. In motor planning of eye, gaze or arm movements, or sensorimotor transformation problems, the 3D kinematics of external (stimuli) or internal (body parts) must often be considered: how to describe the 3D position and orientation of these objects and link them together? We describe how dual quaternions provide a convenient way to describe the 3D kinematics for position only (point transformation) or for combined position and orientation (through line transformation), easily modeling rotations, translations or screw motions or combinations of these. We also derive expressions for the velocities of points and lines as well as the transformation velocities. Then, we apply these tools to a motor planning task for manual tracking and to the modeling of forward and inverse kinematics of a seven-dof three-link arm to show the interest of dual quaternions as a tool to build models for these kinds of applications. PMID:23443667

  6. Kinematical invariance groups of the 3d Schrödinger equations with position dependent masses

    NASA Astrophysics Data System (ADS)

    Nikitin, A. G.

    2017-08-01

    Kinematical invariance groups of the 3d Schrödinger equations with position dependent masses and arbitrary potentials are classified. All non-equivalent classes of such equations are presented together with the corresponding symmetry algebras. The specific symmetries connected with the presence of the ordering-ambiguity parameters are discussed, and an extended class of systems which keep their forms for arbitrary or particular changes of these parameters is specified.

  7. The influence of different footwear on 3-D kinematics and muscle activation during the barbell back squat in males.

    PubMed

    Sinclair, Jonathan; McCarthy, Derek; Bentley, Ian; Hurst, Howard Thomas; Atkins, Stephen

    2015-01-01

    The barbell back squat is commonly used by athletes participating in resistance training. The barbell squat is typically performed using standard athletic shoes, or specially designed weightlifting footwear, although there are now a large number of athletes who prefer to squat barefoot or in barefoot-inspired footwear. This study aimed to determine how these footwear influence 3-D kinematics and muscle activation potentials during the barbell back squat. Fourteen experienced male participants completed squats at 70% 1 rep max in each footwear condition. 3-D kinematics from the torso, hip, knee and ankle were measured using an eight-camera motion analysis system. In addition, electromyographical (EMG) measurements were obtained from the rectus femoris, tibialis anterior, gastrocnemius, erector spinae and biceps femoris muscles. EMG parameters and joint kinematics were compared between footwear using repeated-measures analyses of variance. Participants were also asked to subjectively rate which footwear they preferred when performing their squat lifts; this was examined a chi-squared test. The kinematic analysis indicated that, in comparison to barefoot the running shoe was associated with increased squat depth, knee flexion and rectus femoris activation. The chi-squared test was significant and showed that participants preferred to squat barefoot. This study supports anecdotal evidence of athletes who prefer to train barefoot or in barefoot-inspired footwear although no biomechanical evidence was found to support this notion.

  8. Evaluation of RSA set-up from a clinical biplane fluoroscopy system for 3D joint kinematic analysis

    PubMed Central

    BONANZINGA, TOMMASO; SIGNORELLI, CECILIA; BONTEMPI, MARCO; RUSSO, ALESSANDRO; ZAFFAGNINI, STEFANO; MARCACCI, MAURILIO; BRAGONZONI, LAURA

    2016-01-01

    Purpose dinamic roentgen stereophotogrammetric analysis (RSA), a technique currently based only on customized radiographic equipment, has been shown to be a very accurate method for detecting three-dimensional (3D) joint motion. The aim of the present work was to evaluate the applicability of an innovative RSA set-up for in vivo knee kinematic analysis, using a biplane fluoroscopic image system. To this end, the Authors describe the set-up as well as a possible protocol for clinical knee joint evaluation. The accuracy of the kinematic measurements is assessed. Methods the Authors evaluated the accuracy of 3D kinematic analysis of the knee in a new RSA set-up, based on a commercial biplane fluoroscopy system integrated into the clinical environment. The study was organized in three main phases: an in vitro test under static conditions, an in vitro test under dynamic conditions reproducing a flexion-extension range of motion (ROM), and an in vivo analysis of the flexion-extension ROM. For each test, the following were calculated, as an indication of the tracking accuracy: mean, minimum, maximum values and standard deviation of the error of rigid body fitting. Results in terms of rigid body fitting, in vivo test errors were found to be 0.10±0.05 mm. Phantom tests in static and kinematic conditions showed precision levels, for translations and rotations, of below 0.1 mm/0.2° and below 0.5 mm/0.3° respectively for all directions. Conclusions the results of this study suggest that kinematic RSA can be successfully performed using a standard clinical biplane fluoroscopy system for the acquisition of slow movements of the lower limb. Clinical relevance a kinematic RSA set-up using a clinical biplane fluoroscopy system is potentially applicable and provides a useful method for obtaining better characterization of joint biomechanics. PMID:27602352

  9. Does tester experience influence the reliability with which 3D gait kinematics are collected in healthy adults?

    PubMed

    Leigh, Ryan J; Pohl, Michael B; Ferber, Reed

    2014-05-01

    To determine whether tester experience influences the reliability of three-dimensional gait collections. Reliability study. Ten healthy subjects visited a university gait laboratory on two separate days and underwent a walking gait analysis. During each visit, kinematic data were collected by a biomechanist with 8 years of 3D gait analysis experience (EXP) and a physical therapist with no previous 3D gait analysis experience (NOV). Joint kinematic angles were calculated using either a functional or predictive joint identification method. Within-tester and between-tester measures of reliability were determined by calculating the root mean square error (RMS) and coefficient of multiple correlations (CMC). Within-tester RMS and CMC values were not significantly different (P > 0.05) between the EXP and NOV testers using either a functional or predictive joint approach. Within-tester CMC values exceeded 0.90 for both testers across all kinematic variables. Between-tester CMC reliability values were greater than 0.85 for all variables measured. Following basic training, a physiotherapy clinician with no previous 3D gait experience is as reliable as an experienced gait biomechanist with respect to marker placement accuracy. In addition, reliability comparisons between an experienced and novice tester appear independent of the joint identification method chosen. Copyright © 2013 Elsevier Ltd. All rights reserved.

  10. Case study of 3D fingerprints applications.

    PubMed

    Liu, Feng; Liang, Jinrong; Shen, Linlin; Yang, Meng; Zhang, David; Lai, Zhihui

    2017-01-01

    Human fingers are 3D objects. More information will be provided if three dimensional (3D) fingerprints are available compared with two dimensional (2D) fingerprints. Thus, this paper firstly collected 3D finger point cloud data by Structured-light Illumination method. Additional features from 3D fingerprint images are then studied and extracted. The applications of these features are finally discussed. A series of experiments are conducted to demonstrate the helpfulness of 3D information to fingerprint recognition. Results show that a quick alignment can be easily implemented under the guidance of 3D finger shape feature even though this feature does not work for fingerprint recognition directly. The newly defined distinctive 3D shape ridge feature can be used for personal authentication with Equal Error Rate (EER) of ~8.3%. Also, it is helpful to remove false core point. Furthermore, a promising of EER ~1.3% is realized by combining this feature with 2D features for fingerprint recognition which indicates the prospect of 3D fingerprint recognition.

  11. A kinematic model for 3-D head-free gaze-shifts

    PubMed Central

    Daemi, Mehdi; Crawford, J. Douglas

    2015-01-01

    Rotations of the line of sight are mainly implemented by coordinated motion of the eyes and head. Here, we propose a model for the kinematics of three-dimensional (3-D) head-unrestrained gaze-shifts. The model was designed to account for major principles in the known behavior, such as gaze accuracy, spatiotemporal coordination of saccades with vestibulo-ocular reflex (VOR), relative eye and head contributions, the non-commutativity of rotations, and Listing's and Fick constraints for the eyes and head, respectively. The internal design of the model was inspired by known and hypothesized elements of gaze control physiology. Inputs included retinocentric location of the visual target and internal representations of initial 3-D eye and head orientation, whereas outputs were 3-D displacements of eye relative to the head and head relative to shoulder. Internal transformations decomposed the 2-D gaze command into 3-D eye and head commands with the use of three coordinated circuits: (1) a saccade generator, (2) a head rotation generator, (3) a VOR predictor. Simulations illustrate that the model can implement: (1) the correct 3-D reference frame transformations to generate accurate gaze shifts (despite variability in other parameters), (2) the experimentally verified constraints on static eye and head orientations during fixation, and (3) the experimentally observed 3-D trajectories of eye and head motion during gaze-shifts. We then use this model to simulate how 2-D eye-head coordination strategies interact with 3-D constraints to influence 3-D orientations of the eye-in-space, and the implications of this for spatial vision. PMID:26113816

  12. Static versus dynamic kinematics in cyclists: A comparison of goniometer, inclinometer and 3D motion capture.

    PubMed

    Holliday, W; Fisher, J; Theo, R; Swart, J

    2017-07-27

    Kinematic measurements conducted during bike set-ups utilise either static or dynamic measures. There is currently limited data on reliability of static and dynamic measures nor consensus on which is the optimal method. The aim of the study was to assess the difference between static and dynamic measures of the ankle, knee, hip, shoulder and elbow. Nineteen subjects performed three separate trials for a 10-min duration at a fixed workload (70% of peak power output). Static measures were taken with a standard goniometer (GM), an inclinometer (IM) and dynamic three-dimensional motion capture (3DMC) using an eight camera motion capture system. Static and dynamic joint angles were compared over the three trials to assess repeatability of the measurements and differences between static and dynamic values. There was a positive correlation between GM and IM measures for all joints. Only the knee, shoulder and elbow were positively correlated between GM and 3DMC, and IM and 3DMC. Although all three instruments were reliable, 3D motion analysis utilised different landmarks for most joints and produced different means. Changes in knee flexion angle from static to dynamic are attributable to changes in the positioning of the foot. Controlling for this factor, the differences are negated. It was demonstrated that 3DMC is not interchangeable with GM and IM, and it is recommended that 3DMC develop independent reference values for bicycle configuration.

  13. The relationship between 3-D kinematics and gliding performance in the southern flying squirrel, Glaucomys volans.

    PubMed

    Bishop, Kristin L

    2006-02-01

    Gliding is the simplest form of flight, yet relatively little is known about its mechanics in animals. The goal of this study was to describe the body position and performance of a gliding mammal and to identify correlates between kinematics and aerodynamic performance. To do this, I used a pair of high-speed digital cameras to record a portion of the middle of glides by southern flying squirrels, Glaucomys volans. The squirrels launched from a height of 4 m and landed on a vertical pole. Reflective markers were applied to anatomical landmarks and the 3-D coordinates of these points were computed to describe the kinematics of the glides. From these data I estimated the lift and drag generated during the glide, and correlated these variables with gliding performance as measured by glide angle, glide speed and stability. In the majority of the glide sequences the squirrels accelerated in the downward direction and accelerated horizontally forward as they moved through the calibrated volume in the middle of the glide trajectory, rather than exhibiting a steady glide in which the body weight is balanced by the resultant aerodynamic force. Compared to human engineered airfoils, the angles of attack used by the squirrels were unexpectedly high, ranging from 35.4 degrees to 53.5 degrees , far above the angle of attack at which an aircraft wing would typically stall. As expected based on aerodynamic theory, there was a negative correlation between angle of attack and lift coefficient, indicating that the wings are stalled, and a positive correlation between angle of attack and drag coefficient. Also as expected, there was a negative correlation between lift-to-drag ratio and angle of attack, as increasing angle of attack produced both less lift and more drag. Within glides, there was a strong correlation between nose-down pitching rotations and limb movements that tended to increase the angle of attack of the wing membrane, suggesting that the animals actively control

  14. Kinematics of a growth fault/raft system on the West African margin using 3-D restoration

    NASA Astrophysics Data System (ADS)

    Rouby, Delphine; Raillard, Stéphane; Guillocheau, François; Bouroullec, Renaud; Nalpas, Thierry

    2002-04-01

    The ability to quantify the movement history associated with growth structures is crucial in the understanding of fundamental processes such as the growth of folds or faults in 3-D. In this paper, we present an application of an original approach to restore in 3-D a listric growth fault system resulting from gravity-induced extension located on the West African margin. Our goal is to establish the 3-D structural framework and kinematics of the study area. We construct a 3-D geometrical model of the fault system (from 3-D seismic data), then restore six stratigraphic surfaces and reconstruct the 3-D geometry of the system at six incremental steps of its history. The evolution of the growth fault/raft system corresponds to the progressive separation of two rafts by regional extension, resulting in the development of an intervening basin located between them that evolved in three main stages: (1) the rise of an evaporite wall, (2) the development of a symmetric basin as the elevation of the diapir is reduced and buried, and (3) the development of asymmetric basins related to two systems of listric faults (the main fault F1 and the graben located between the rollovers and the lower raft). Important features of the growth fault/raft system could only be observed in 3-D and with increments of deformation restored. The rollover anticline (associated with the listric fault F1) is composed of two sub-units separated by an E-W oriented transverse graben indicating that the displacement field was divergent in map view. The rollover units are located within the overlap area of two fault systems and displays a 'mock-turtle' anticline structure. The seaward translation of the lower raft is associated with two successive vertical axis rotations in the opposite sense (clockwise then counter-clockwise by about 10°). This results from the fact that the two main fault systems developed successively. Fault system F1 formed during the Upper Albian, and the graben during the Cenomanian

  15. Impedance mammograph 3D phantom studies.

    PubMed

    Wtorek, J; Stelter, J; Nowakowski, A

    1999-04-20

    The results obtained using the Technical University of Gdansk Electroimpedance Mammograph (TUGEM) of a 3D phantom study are presented. The TUGEM system is briefly described. The hardware contains the measurement head and DSP-based identification modules controlled by a PC computer. A specially developed reconstruction algorithm, Regulated Correction Frequency Algebraic Reconstruction Technique (RCFART), is used to obtain 3D images. To visualize results, the Advance Visualization System (AVS) is used. It allows a powerful image processing on a fast workstation or on a high-performance computer. Results of three types of 3D conductivity perturbations used in the study (aluminum, Plexiglas, and cucumber) are shown. The relative volumes of perturbations less than 2% of the measurement chamber are easily evidenced.

  16. 3D kinematic in-vitro comparison of posterolateral corner reconstruction techniques in a combined injury model.

    PubMed

    Nau, Thomas; Chevalier, Yan; Hagemeister, Nicola; Duval, Nicolas; deGuise, Jacques A

    2005-10-01

    With the variable injury pattern to the posterolateral structures (PLS) of the knee, a number of reconstructive procedures have been introduced. It was the aim of the present study to evaluate the resulting 3D kinematics following three different surgical techniques of reconstruction in a combined posterior cruciate ligament (PCL)/PLS injury model. In nine human cadaveric knees, 3D kinematics were recorded during the path of flexion-extension using a computer based custom made 6-degree-of-freedom (DOF) testing apparatus. Additional laxity tests were conducted at 30 and 90 degrees of flexion. Testing was performed before and after cutting the PLS and PCL, followed by PCL reconstruction alone. Reconstructing the posterolateral corner, three surgical techniques were compared: (a) the posterolateral corner sling procedure (PLCS), (b) the biceps tenodesis (BT), and (c) a bone patellar-tendon bone (BTB) allograft reconstruction. Posterior as well as rotational laxity were significantly increased after PCL/PLS transection at 30 and 90 degrees of flexion. Isolated PCL reconstruction resulted in a remaining external rotational deficiency for both tested flexion angles. Additional PLS reconstruction closely restored external rotation as well as posterior translation to intact values by all tested procedures. Compared to the intact knee, dynamic testing revealed a significant internal tibial rotation for (b) BT (mean=3.9 degrees, p=0.043) and for (c) BTB allograft (mean=4.3 degrees, p=0.012). (a) The PLCS demonstrated a tendency to internal tibial rotation between 0 and 60 degrees of flexion (mean=2.2 degrees, p=0.079). Varus/valgus rotation as well as anterior/posterior translation did not show significant differences for any of the tested techniques. The present study shows that despite satisfying results in static laxity testing, pathological 3D knee kinematics were not restored to normal, demonstrated by a nonphysiological internal tibial rotation during the path of

  17. A Cray T3D performance study

    SciTech Connect

    Nallana, A.; Kincaid, D.R.

    1996-05-01

    We carry out a performance study using the Cray T3D parallel supercomputer to illustrate some important features of this machine. Timing experiments show the speed of various basic operations while more complicated operations give some measure of its parallel performance.

  18. Initial Comparison Between a 3D MHD Model and the HAFv2 Kinematic 3D Model: The October/November 2003 Events from the Sun to 6 AU

    SciTech Connect

    Intriligator, Devrie S.; Detman, Thomas; Fry, Craig D.; Sun Wei; Deehr, Charles; Intriligator, James

    2005-08-01

    A first-generation 3D kinematic, space weather forecasting solar wind model (HAFv2) has been used to show the importance of solar generated disturbances in Voyager 1 and Voyager 2 observations in the outer heliosphere. We extend this work by using a 3D MHD model (HHMS) that, like HAFv2, incorporates a global, pre-event, inhomogeneous, background solar wind plasma and interplanetary magnetic field. Initial comparisons are made between the two models of the solar wind out to 6 AU and with in-situ observations at the ACE spacecraft before and after the October/November 2003 solar events.

  19. Using the Microsoft Kinect™ to assess 3-D shoulder kinematics during computer use.

    PubMed

    Xu, Xu; Robertson, Michelle; Chen, Karen B; Lin, Jia-Hua; McGorry, Raymond W

    2017-11-01

    Shoulder joint kinematics has been used as a representative indicator to investigate musculoskeletal symptoms among computer users for office ergonomics studies. The traditional measurement of shoulder kinematics normally requires a laboratory-based motion tracking system which limits the field studies. In the current study, a portable, low cost, and marker-less Microsoft Kinect™ sensor was examined for its feasibility on shoulder kinematics measurement during computer tasks. Eleven healthy participants performed a standardized computer task, and their shoulder kinematics data were measured by a Kinect sensor and a motion tracking system concurrently. The results indicated that placing the Kinect sensor in front of the participants would yielded a more accurate shoulder kinematics measurements then placing the Kinect sensor 15° or 30° to one side. The results also showed that the Kinect sensor had a better estimate on shoulder flexion/extension, compared with shoulder adduction/abduction and shoulder axial rotation. The RMSE of front-placed Kinect sensor on shoulder flexion/extension was less than 10° for both the right and the left shoulder. The measurement error of the front-placed Kinect sensor on the shoulder adduction/abduction was approximately 10° to 15°, and the magnitude of error is proportional to the magnitude of that joint angle. After the calibration, the RMSE on shoulder adduction/abduction were less than 10° based on an independent dataset of 5 additional participants. For shoulder axial rotation, the RMSE of front-placed Kinect sensor ranged between approximately 15° to 30°. The results of the study suggest that the Kinect sensor can provide some insight on shoulder kinematics for improving office ergonomics. Copyright © 2017 Elsevier Ltd. All rights reserved.

  20. The impact of high-heeled shoes on ankle complex during walking in young women-In vivo kinematic study based on 3D to 2D registration technique.

    PubMed

    Wang, Chen; Geng, Xiang; Wang, Shaobai; Ma, Xin; Wang, Xu; Huang, Jiazhang; Zhang, Chao; Chen, Li; Yang, Junsheng; Li, Jiabei; Wang, Kan

    2016-06-01

    To explore the accurate in vivo kinematic changes in the ankle complex when wearing low- and high-heel shoes (LHS and HHS, respectively). Twelve young women were tested unilaterally. Three-dimensional models of the tibia, talus, and calcaneus were first created based on CT scan results. The subjects walked at a self-controlled speed in barefoot, LHS (4cm), and HHS (10cm) conditions. A fluoroscopy system captured the lateral fluoroscopic images of the ankle complex. The images of seven key positions in the stance phase were selected, and 3D to 2D bone model registrations were performed to determine the joint positions. The mean of 6 degree of freedom (DOF) range of motions (ROM), joint positions, and angular displacements of the ankle complex during the gait were then obtained. For the talocrural joint, the rotational ROMs of the subjects either in LHS or HHS condition displayed no significant difference from those in barefoot condition. For the subtalar joint, all the rotational ROMs in the HHS condition and the internal/external rotations in the LHS condition significantly decreased compared with those in the barefoot condition. The talocrural joint was positioned significantly more plantarflexed, inverted, internally rotated, and posteriorly seated in all seven poses in HHS condition, compared with those in barefoot condition. HHS mainly affected the rotational motion of the ankle complex during walking. The talocrural joint position was abnormal, and the subtalar joint ROM decreased during the gait in HHS condition. Only a few kinematic changes occurred in LHS condition relative to the barefoot condition. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Closed-loop control concept for kinematic 3D-profile bending

    NASA Astrophysics Data System (ADS)

    Staupendahl, Daniel; Chatti, Sami; Tekkaya, A. Erman

    2016-10-01

    Kinematic tube and profile bending processes produce bending contours by the relative movement of single process axes. Tools only need to be adapted to fit the cross-section of the tubular material. While offering a great flexibility in production, kinematic bending processes cause a high part springback and as a result, compensatory methods are needed to achieve target contours. These compensatory methods are generally embedded in bending tables or analytical calculations that in turn are embedded into the process control software. This procedure can cope with known material behavior, as for instance gained through a tensile test of the material batch prior to the bending process. Material variations inside a batch cannot be detected however and cause contour deviations. To counter this error, a closed-loop control system can be used, which can quickly adapt axes' movements to produce target shapes and thus reduce scrap. In this paper, two methods to apply closed-loop control to 3D profile bending will be presented. An indirect approach, using the bending force and torque, and a direct approach, by measuring the profile contour after bending.

  2. 3D kinematics of the near-IR HH 223 outflow in L723

    NASA Astrophysics Data System (ADS)

    López, R.; Acosta-Pulido, J. A.; Estalella, R.; Gómez, G.; García-Lorenzo, B.

    2015-03-01

    In this work, we derive the full 3D kinematics of the near-infrared outflow HH 223, located in the dark cloud Lynds 723 (L723), where a well-defined quadrupolar CO outflow is found. HH 223 appears projected on to the two lobes of the east-west CO outflow. The radio continuum source VLA 2, towards the centre of the CO outflow, harbours a multiple system of low-mass young stellar objects. One of the components has been proposed to be the exciting source of the east-west CO outflow. From the analysis of the kinematics, we get further evidence on the relationship between the near-infrared and CO outflows and on the location of their exciting source. The proper motions were derived using multi-epoch, narrow-band H2 (2.122 μm line) images. Radial velocities were derived from the 2.122 μm line of the spectra. Because of the extended (˜5 arcmin), S-shaped morphology of the target, the spectra were obtained with the multi-object-spectroscopy (MOS) observing mode using the instrument Long-Slit Intermediate Resolution Infrared Spectrograph (LIRIS) at the 4.2 m William Herschel Telescope. To our knowledge, this work is the first time that MOS observing mode has been successfully used in the near-infrared range for an extended target.

  3. Pseudo-automatic Determination of Coronal Mass Ejections’ Kinematics in 3D

    NASA Astrophysics Data System (ADS)

    Braga, Carlos Roberto; Dal Lago, Alisson; Echer, Ezequiel; Stenborg, Guillermo; Rodrigues Souza de Mendonça, Rafael

    2017-06-01

    Coronal mass ejection (CME) events are among the main drivers of geomagnetic disturbances, and hence play a central role in the Sun-Earth system. Their monitoring and, in particular, the determination of their speed and direction of propagation are key issues for the forecasting of space weather near to Earth. We have implemented a method to track CME events in three dimensions by combining triangulation and tie-pointing analysis with a supervised computer vision algorithm. This novel approach does not rely on any geometric constraint, and eliminates the need for visual identification of the CME boundaries. We applied our method to 17 CME events observed simultaneously by the twin Solar Terrestrial Relations Observatory (STEREO) COR2 coronagraph imagers from 2008 December to 2011 November in order to obtain their 3D kinematical characterization (i.e., the velocity vector) along with their morphological properties. About ten of these events have already been analyzed using other methodologies. In these cases, we carried out a thorough comparison with our results and found that, in spite of the different nature and spatial coverage range of the other methods with respect to CORSET3D, the majority of the results agree. We found, however, that three events exhibited discrepancies in the magnitude of the velocity vector, four in the longitudinal direction of propagation, and in only one case was there a discrepancy in latitude. The discrepancies appeared in those cases where quasi-simultaneous, quasi-co-located events were observed in the coronagraphs’ fields of view.

  4. From the Tachocline Into the Heliosphere: Coupling a 3D kinematic dynamo to a Non-Linear Coronal Evolution Model

    NASA Astrophysics Data System (ADS)

    Munoz-Jaramillo, A.; Yeates, A. R.

    2013-12-01

    During the last decade, axisymmetric kinematic dynamo models have contributed greatly to our understanding of the solar cycle. However, with the advent of more powerful computers the limitation to axisymmetry has been lifted. Here we present a 3D kinematic dynamo model where active regions are driven by velocity perturbations calibrated to reproduce observed active region properties (including the size and flux of active regions, and the distribution of tilt angle with latitude), resulting in a more consistent treatment of flux-tube emergence in kinematic dynamo models than artificial flux deposition. We demonstrate how this technique can be used to assimilate active region observations obtained from the US National Solar Observatory/Kitt Peak (NSO/KP) synoptic magnetograms and how our model couples naturally with three-dimensional simulations of the Sun's coronal magnetic field paving the way for the simultaneous study of the evolution of the magnetic field in the solar interior as well as its impact on the heliosphere. This research is supported by the NASA Living With a Star Jack Eddy Postdoctoral Fellowship Program, administered by the UCAR Visiting Scientist Programs.

  5. Beowulf 3D: a case study

    NASA Astrophysics Data System (ADS)

    Engle, Rob

    2008-02-01

    This paper discusses the creative and technical challenges encountered during the production of "Beowulf 3D," director Robert Zemeckis' adaptation of the Old English epic poem and the first film to be simultaneously released in IMAX 3D and digital 3D formats.

  6. Analysis of 3D kinematics concerning three different clubs in golf swing.

    PubMed

    Egret, C I; Vincent, O; Weber, J; Dujardin, F H; Chollet, D

    2003-08-01

    Although many professionals have produced books or videotapes which offer a novel approach to the game, a review of the scientific literature reports limited research evaluating the actual biomechanics of the golf swing in comparison with other sports. The aim of this study was to investigate the influence of kinematic pattern in golf swing using three different clubs: driver, five-iron, pitching-wedge. These three golf clubs have been chosen for their available range of ball flight. The measures of kinematic data during swing were established with the optoelectronic system VICON (Oxford's Metrics, Oxford, UK) with five cameras operating at 50 frames per second. Clubhead speed was measured using a swing made detector (Bell-Tronics, Ltd, Covington, USA). Seven right-handed male golfers with a high level of skill participated in the study. The results showed that there was an identical timing (movement time and proportion for each phase of the swing) between the three clubs tested, but the kinematics and the clubhead speed were different depending on the three different clubs used.

  7. Computer-Assisted 3D Kinematic Analysis of All Leg Joints in Walking Insects

    PubMed Central

    Bender, John A.; Simpson, Elaine M.; Ritzmann, Roy E.

    2010-01-01

    High-speed video can provide fine-scaled analysis of animal behavior. However, extracting behavioral data from video sequences is a time-consuming, tedious, subjective task. These issues are exacerbated where accurate behavioral descriptions require analysis of multiple points in three dimensions. We describe a new computer program written to assist a user in simultaneously extracting three-dimensional kinematics of multiple points on each of an insect's six legs. Digital video of a walking cockroach was collected in grayscale at 500 fps from two synchronized, calibrated cameras. We improved the legs' visibility by painting white dots on the joints, similar to techniques used for digitizing human motion. Compared to manual digitization of 26 points on the legs over a single, 8-second bout of walking (or 106,496 individual 3D points), our software achieved approximately 90% of the accuracy with 10% of the labor. Our experimental design reduced the complexity of the tracking problem by tethering the insect and allowing it to walk in place on a lightly oiled glass surface, but in principle, the algorithms implemented are extensible to free walking. Our software is free and open-source, written in the free language Python and including a graphical user interface for configuration and control. We encourage collaborative enhancements to make this tool both better and widely utilized. PMID:21049024

  8. Structure, Kinematics and Origin of Radial Faults: 3D Seismic Observations from the Santos Basin, offshore Brazil

    NASA Astrophysics Data System (ADS)

    Coleman, Alexander; Jackson, Christopher A.-L.

    2017-04-01

    Salt stock growth is typically accompanied by the development of geometrically and kinematically complex fault networks in the surrounding country rock. The most common networks comprise radial faults; these are characterised by low displacement (<100 m) normal faults that extend radially outwards from the salt stock into flanking strata. Radial faults are commonly observed in an arched, unpierced roof developed above a rising salt stock; in these cases, the faults are typically well-imaged seismically and likely form due to outer-arc extension during overburden stretching. Radial faults are also found at deeper structural levels, in strata flanking the diapir stem; in these cases, they are typically less well-imaged, thus their structure, kinematics and origin are less well understood. Furthermore, understanding the growth of radial faults may provide insights into hydrocarbon reservoir compartmentalisation and the evolution of neighbouring salt stocks. Here, we use high-quality 3D seismic reflection data from the Santos Basin, offshore Brazil to determine the structure and kinematics, and infer the likely origin of exceptionally well-imaged radial faults overlying and flanking a mature salt stock. Furthermore, we compare the geometric (e.g. throw, geometry, spacing, distribution etc.) and kinematic (e.g. timing of formation and duration of activity) characteristics of radial faults at both structural levels, allowing us to infer their temporal relationship and likely origins. We show that radial faults regardless of their structural level typically have aspect ratios of c. 1.8 - 2, are laterally-restricted in the vicinity of the salt, and have lengths of <3 km that vary with depth. Expansion indices of c. 1, with low throw gradients of 0.05 - 0.1 at the upper tip indicate that radial faults were likely blind. Throws range from 5 - 80 ms, with throw-maxima within 1 - 2 radii of the salt diapir. However, we note that the position of the throw maxima is not at the

  9. Tibiofemoral and patellofemoral joint 3D-kinematics in patients with posterior cruciate ligament deficiency compared to healthy volunteers

    PubMed Central

    2012-01-01

    Background The posterior cruciate ligament (PCL) plays an important role in maintaining physiological kinematics and function of the knee joint. To date mainly in-vitro models or combined magnetic resonance and fluoroscopic systems have been used for quantifying the importance of the PCL. We hypothesized, that both tibiofemoral and patellofemoral kinematic patterns are changed in PCL-deficient knees, which is increased by isometric muscle flexion. Therefore the aim of this study was to simultaneously investigate tibiofemoral and patellofemoral 3D kinematics in patients suffering from PCL deficiency during different knee flexion angles and under neuromuscular activation. Methods We enrolled 12 patients with isolated PCL-insufficiency as well as 20 healthy volunteers. Sagittal MR-images of the knee joint were acquired in different positions of the knee joint (0°, 30°, 90° flexion, with and without flexing isometric muscle activity) on a 0.2 Tesla open MR-scanner. After segmentation of the patella, femur and tibia local coordinate systems were established to define the spatial position of these structures in relation to each other. Results At full extension and 30° flexion no significant difference was observed in PCL-deficient knee joints neither for tibiofemoral nor for patellofemoral kinematics. At 90° flexion the femur of PCL-deficient patients was positioned significantly more anteriorly in relation to the tibia and both, the patellar tilt and the patellar shift to the lateral side, significantly increased compared to healthy knee joints. While no significant effect of isometric flexing muscle activity was observed in healthy individuals, in PCL-deficient knee joints an increased paradoxical anterior translation of the femur was observed at 90° flexion compared to the status of muscle relaxation. Conclusions Significant changes in tibiofemoral and patellofemoral joint kinematics occur in patients with isolated PCL-insufficiency above 30 degrees of flexion

  10. Development of kinematic 3D laser scanning system for indoor mapping and as-built BIM using constrained SLAM.

    PubMed

    Jung, Jaehoon; Yoon, Sanghyun; Ju, Sungha; Heo, Joon

    2015-10-16

    The growing interest and use of indoor mapping is driving a demand for improved data-acquisition facility, efficiency and productivity in the era of the Building Information Model (BIM). The conventional static laser scanning method suffers from some limitations on its operability in complex indoor environments, due to the presence of occlusions. Full scanning of indoor spaces without loss of information requires that surveyors change the scanner position many times, which incurs extra work for registration of each scanned point cloud. Alternatively, a kinematic 3D laser scanning system, proposed herein, uses line-feature-based Simultaneous Localization and Mapping (SLAM) technique for continuous mapping. Moreover, to reduce the uncertainty of line-feature extraction, we incorporated constrained adjustment based on an assumption made with respect to typical indoor environments: that the main structures are formed of parallel or orthogonal line features. The superiority of the proposed constrained adjustment is its reduction for uncertainties of the adjusted lines, leading to successful data association process. In the present study, kinematic scanning with and without constrained adjustment were comparatively evaluated in two test sites, and the results confirmed the effectiveness of the proposed system. The accuracy of the 3D mapping result was additionally evaluated by comparison with the reference points acquired by a total station: the Euclidean average distance error was 0.034 m for the seminar room and 0.043 m for the corridor, which satisfied the error tolerance for point cloud acquisition (0.051 m) according to the guidelines of the General Services Administration for BIM accuracy.

  11. Isotropic at the Break? 3D Kinematics of Milky Way Halo Stars in the Foreground of M31

    NASA Astrophysics Data System (ADS)

    Cunningham, Emily C.; Deason, Alis J.; Guhathakurta, Puragra; Rockosi, Constance M.; van der Marel, Roeland P.; Toloba, Elisa; Gilbert, Karoline M.; Sohn, Sangmo Tony; Dorman, Claire E.

    2016-03-01

    We present the line-of-sight (LOS) velocities for 13 distant main sequence Milky Way halo stars with published proper motions (PMs). The PMs were measured using long baseline (5-7 years) multi-epoch Hubble Space Telescope/Advanced Camera for Surveys photometry, and the LOS velocities were extracted from deep (5-6 hr integrations) Keck II/DEIMOS spectra. We estimate the parameters of the velocity ellipsoid of the stellar halo using a Markov chain Monte Carlo ensembler sampler method. The velocity second moments in the directions of the Galactic (l, b, LOS) coordinate system are {< {v}l2> }1/2={138}-26+43 km s-1, {< {v}b2> }1/2={88}-17+28 {\\text{km s}}-1, and {< {v}{{LOS}}2> }1/2={91}-14+27 {\\text{km s}}-1. We use these ellipsoid parameters to constrain the velocity anisotropy of the stellar halo. Ours is the first measurement of the anisotropy parameter β using 3D kinematics outside of the solar neighborhood. We find β =-{0.3}-0.9+0.4, consistent with isotropy and lower than solar neighborhood β measurements by 2σ (βSN ˜ 0.5-0.7). We identify two stars in our sample that are likely members of the known TriAnd substructure, and excluding these objects from our sample increases our estimate of the anisotropy to β ={0.1}-1.0+0.4, which is still lower than solar neighborhood measurements by 1σ. The potential decrease in β with Galactocentric radius is inconsistent with theoretical predictions, though consistent with recent observational studies, and may indicate the presence of large, shell-type structure (or structures) at r ˜ 25 kpc. The methods described in this paper will be applied to a much larger sample of stars with 3D kinematics observed through the ongoing HALO7D program.

  12. Development of Kinematic 3D Laser Scanning System for Indoor Mapping and As-Built BIM Using Constrained SLAM

    PubMed Central

    Jung, Jaehoon; Yoon, Sanghyun; Ju, Sungha; Heo, Joon

    2015-01-01

    The growing interest and use of indoor mapping is driving a demand for improved data-acquisition facility, efficiency and productivity in the era of the Building Information Model (BIM). The conventional static laser scanning method suffers from some limitations on its operability in complex indoor environments, due to the presence of occlusions. Full scanning of indoor spaces without loss of information requires that surveyors change the scanner position many times, which incurs extra work for registration of each scanned point cloud. Alternatively, a kinematic 3D laser scanning system, proposed herein, uses line-feature-based Simultaneous Localization and Mapping (SLAM) technique for continuous mapping. Moreover, to reduce the uncertainty of line-feature extraction, we incorporated constrained adjustment based on an assumption made with respect to typical indoor environments: that the main structures are formed of parallel or orthogonal line features. The superiority of the proposed constrained adjustment is its reduction for uncertainties of the adjusted lines, leading to successful data association process. In the present study, kinematic scanning with and without constrained adjustment were comparatively evaluated in two test sites, and the results confirmed the effectiveness of the proposed system. The accuracy of the 3D mapping result was additionally evaluated by comparison with the reference points acquired by a total station: the Euclidean average distance error was 0.034 m for the seminar room and 0.043 m for the corridor, which satisfied the error tolerance for point cloud acquisition (0.051 m) according to the guidelines of the General Services Administration for BIM accuracy. PMID:26501292

  13. Kinematic ground motion simulations on rough faults including effects of 3D stochastic velocity perturbations

    USGS Publications Warehouse

    Graves, Robert; Pitarka, Arben

    2016-01-01

    We describe a methodology for generating kinematic earthquake ruptures for use in 3D ground‐motion simulations over the 0–5 Hz frequency band. Our approach begins by specifying a spatially random slip distribution that has a roughly wavenumber‐squared fall‐off. Given a hypocenter, the rupture speed is specified to average about 75%–80% of the local shear wavespeed and the prescribed slip‐rate function has a Kostrov‐like shape with a fault‐averaged rise time that scales self‐similarly with the seismic moment. Both the rupture time and rise time include significant local perturbations across the fault surface specified by spatially random fields that are partially correlated with the underlying slip distribution. We represent velocity‐strengthening fault zones in the shallow (<5  km) and deep (>15  km) crust by decreasing rupture speed and increasing rise time in these regions. Additional refinements to this approach include the incorporation of geometric perturbations to the fault surface, 3D stochastic correlated perturbations to the P‐ and S‐wave velocity structure, and a damage zone surrounding the shallow fault surface characterized by a 30% reduction in seismic velocity. We demonstrate the approach using a suite of simulations for a hypothetical Mw 6.45 strike‐slip earthquake embedded in a generalized hard‐rock velocity structure. The simulation results are compared with the median predictions from the 2014 Next Generation Attenuation‐West2 Project ground‐motion prediction equations and show very good agreement over the frequency band 0.1–5 Hz for distances out to 25 km from the fault. Additionally, the newly added features act to reduce the coherency of the radiated higher frequency (f>1  Hz) ground motions, and homogenize radiation‐pattern effects in this same bandwidth, which move the simulations closer to the statistical characteristics of observed motions as illustrated by comparison with recordings from

  14. Magnitude and pattern of 3D kinematic and kinetic gait profiles in persons with stroke: Relationship to walking speed

    PubMed Central

    Kim, C Maria; Eng, Janice J

    2011-01-01

    The purpose of this study was to identify 3D kinematic and kinetic gait profiles in individuals with chronic stroke and to determine whether the magnitude or pattern (shape and direction of curve) of these profiles relate to gait performance (as measured by self-selected gait speed). More than one type of kinematic and kinetic pattern was identified in all three planes in 20 individuals with stroke (age = 61.2 ± 8.4 years). Persons in the “fast” speed group did not necessarily exhibit the gait patterns closest to the ones reported for healthy adults. For example, in the frontal plane, a variation from the typical pattern (i.e., a hip abductor pattern in swing) was more common among the “fast” group. Correlations revealed that in addition to the sagittal profiles, the magnitudes of the frontal and transverse profiles are also related to speed, particularly the frontal hip powers. The results support the importance of hip abductors, in addition to the sagittal plane muscle groups, for both the paretic and non-paretic limbs. Furthermore, profiles which resemble gait patterns of neurologically healthy adults do not necessarily result in the faster gait speeds for individuals with chronic stroke. PMID:15336283

  15. Magnitude and pattern of 3D kinematic and kinetic gait profiles in persons with stroke: relationship to walking speed.

    PubMed

    Kim, C Maria; Eng, Janice J

    2004-10-01

    The purpose of this study was to identify 3D kinematic and kinetic gait profiles in individuals with chronic stroke and to determine whether the magnitude or pattern (shape and direction of curve) of these profiles relate to gait performance (as measured by self-selected gait speed). More than one type of kinematic and kinetic pattern was identified in all three planes in 20 individuals with stroke (age: 61.2+/-8.4 years). Persons in the "fast" speed group did not necessarily exhibit the gait patterns closest to the ones reported for healthy adults. For example, in the frontal plane, a variation from the typical pattern (i.e., a hip abductor pattern in swing) was more common among the "fast" group. Correlations revealed that in addition to the sagittal profiles, the magnitudes of the frontal and transverse profiles are also related to speed, particularly the frontal hip powers. The results support the importance of hip abductors, in addition to the sagittal plane muscle groups, for both the paretic and non-paretic limbs. Furthermore, profiles which resemble gait patterns of neurologically healthy adults do not necessarily result in the faster gait speeds for individuals with chronic stroke.

  16. Kinematics of local and high-z galaxies through 3D modeling of emission-line datacubes

    NASA Astrophysics Data System (ADS)

    Di Teodoro, Enrico M.

    2015-12-01

    The kinematics is a fundamental tool to infer the dynamical structure of galaxies and to understand their formation and evolution. Spectroscopic observations of gas emission lines are often used to derive rotation curves and velocity dispersions. It is however difficult to disentangle these two quantities in low spatial-resolution data because of beam smearing. In this thesis, we present 3D-Barolo, a new software to derive the gas kinematics of disk galaxies from emission-line data-cubes. The code builds tilted-ring models in the 3D observational space and compares them with the actual data-cubes. 3D-Barolo works with data at a wide range of spatial resolutions without being affected by instrumental biases. We use 3D-Barolo to derive rotation curves and velocity dispersions of several galaxies in both the local and the high-redshift Universe. We run our code on HI observations of nearby galaxies and we compare our results with 2D traditional approaches. We show that a 3D approach to the derivation of the gas kinematics has to be preferred to a 2D approach whenever a galaxy is resolved with less than about 20 elements across the disk. We moreover analyze a sample of galaxies at z~1, observed in the H-alpha line with the KMOS/VLT spectrograph. Our 3D modeling reveals that the kinematics of these high-z systems is comparable to that of local disk galaxies, with steeply-rising rotation curves followed by a flat part and H-alpha velocity dispersions of 15-40 km/s over the whole disks. This evidence suggests that disk galaxies were already fully settled about 7-8 billion years ago. In summary, 3D-Barolo is a powerful and robust tool to separate physical and instrumental effects and to derive a reliable kinematics. The analysis of large samples of galaxies at different redshifts with 3D-Barolo will provide new insights on how galaxies assemble and evolve throughout cosmic time.

  17. 3D kinematics of the tarsal joints from magnetic resonance images

    NASA Astrophysics Data System (ADS)

    Hirsch, Bruce E.; Udupa, Jayaram K.; Okereke, Enyi; Hillstrom, Howard J.; Siegler, Sorin; Ringleb, Stacie I.; Imhauser, Carl W.

    2001-09-01

    We have developed a method for analyzing motion at skeletal joints based on the 3D reconstruction of magnetic resonance (MR) image data. Since the information about each voxel in MR images includes its location in the scanner, it follows that information is available for each organ whose 3D surface is computed from a series of MR slices. In addition, there is information on the shape and orientation of each organ, and the contact areas of adjacent bones. By collecting image data in different positions we can calculate the motion of the individual bones. We have used this method to study human foot bones, in order to understand normal and abnormal foot function. It has been used to evaluate patients with tarsal coalitions, various forms of pes planus, ankle sprains, and several other conditions. A newly described feature of this system is the ability to visualize the contact area at a joint, as determined by the region of minimum distance. The display of contact area helps understand abnormal joint function. Also, the use of 3D imaging reveals motions in joints which cannot otherwise be visualized, such as the subtalar joint, for more accurate diagnosis of joint injury.

  18. The Appropriateness of the Helical Axis Technique and Six Available Cardan Sequences for the Representation of 3-D Lead Leg Kinematics During the Fencing Lunge

    PubMed Central

    Sinclair, Jonathan; Taylor, Paul J; Bottoms, Lindsay

    Cardan/Euler angles represent the most common technique for the quantification of segmental rotations. Cardan angles are influenced by their ordered sequence, and sensitive to planar-cross talk from the dominant rotation plane, which may affect the angular parameters. The International Society of Biomechanics (ISB) currently recommends a sagittal, coronal, and then transverse (XYZ) ordered sequence, although it has been proposed that when quantifying non-sagittal rotations this may not be the most appropriate technique. This study examined the influence of the helical and six available Cardan sequences on lower extremity three-dimensional (3-D) kinematics of the lead leg during the fencing lunge. Kinematic data were obtained using a 3-D motion capture system as participants completed simulated lunges. Repeated measures ANOVAs were used to compare discrete kinematic parameters, and intraclass correlations were also utilized to determine evidence of planar crosstalk. The results indicate that in all three planes of rotation, peak angle and range of motion angles using the YXZ and ZXY sequences were significantly greater than the other sequences. It was also noted that the utilization of the YXZ and ZXY sequences was associated with the strongest correlations from the sagittal plane, and the XYZ sequence was found habitually to be associated with the lowest correlations. It appears that for accurate representation of 3-D kinematics of the lead leg during the fencing lunge, the XYZ sequence is the most appropriate and as such its continued utilization is encouraged. PMID:24146700

  19. The appropriateness of the helical axis technique and six available cardan sequences for the representation of 3-d lead leg kinematics during the fencing lunge.

    PubMed

    Sinclair, Jonathan; Taylor, Paul J; Bottoms, Lindsay

    2013-01-01

    Cardan/Euler angles represent the most common technique for the quantification of segmental rotations. Cardan angles are influenced by their ordered sequence, and sensitive to planar-cross talk from the dominant rotation plane, which may affect the angular parameters. The International Society of Biomechanics (ISB) currently recommends a sagittal, coronal, and then transverse (XYZ) ordered sequence, although it has been proposed that when quantifying non-sagittal rotations this may not be the most appropriate technique. This study examined the influence of the helical and six available Cardan sequences on lower extremity three-dimensional (3-D) kinematics of the lead leg during the fencing lunge. Kinematic data were obtained using a 3-D motion capture system as participants completed simulated lunges. Repeated measures ANOVAs were used to compare discrete kinematic parameters, and intraclass correlations were also utilized to determine evidence of planar crosstalk. The results indicate that in all three planes of rotation, peak angle and range of motion angles using the YXZ and ZXY sequences were significantly greater than the other sequences. It was also noted that the utilization of the YXZ and ZXY sequences was associated with the strongest correlations from the sagittal plane, and the XYZ sequence was found habitually to be associated with the lowest correlations. It appears that for accurate representation of 3-D kinematics of the lead leg during the fencing lunge, the XYZ sequence is the most appropriate and as such its continued utilization is encouraged.

  20. Scenario Testing and Sensitivity Analysis for 3-D Kinematic Models and Geophysical Fields

    NASA Astrophysics Data System (ADS)

    Wellmann, Florian; Lindsay, Mark; Jessell, Mark

    2015-04-01

    Geological models are widely used to represent the structural setting of the subsurface. Commonly, a single model is generated for a region, representing the best interpretation of the structural setting in the light of all available information. It is, however, widely accepted that a such created model still contains uncertainties. We hypothesise here that it is possible to transform a single kinematic model into a powerful predictive tool for scenario analysis and uncertainty quantification. We extend the functionality of a kinematic structural and geophysical modelling approach, implemented in the software Noddy, with a set newly developed Python modules to expose, generalise and automate essential parts of the modelling workflow. We show how these methods enable us to quickly generate and analyse different geological scenarios. In addition to the geological model, Noddy also enables the direct calculation of geophysical fields of gravity and magnetics. We can use this functionality to compare the model to measured potential fields. With an example for a fold and thrust belt model, we show how to quickly estimate how changes in the model (due to parameter uncertainties, for example) affect the calculated gravity field in the model range. Finally, we present the possibility to efficiently generate an ensemble of model realisations for predictive geomodel analysis with an application to a case study in the Gippsland Basin, Victoria. The results show that our approach can successfully extend the functionality of traditional modelling methods with an additional layer of predictive power towards an efficient evaluation of uncertainties in structural geological models.

  1. A volumetric model-based 2D to 3D registration method for measuring kinematics of natural knees with single-plane fluoroscopy

    SciTech Connect

    Tsai, Tsung-Yuan; Lu, Tung-Wu; Chen, Chung-Ming; Kuo, Mei-Ying; Hsu, Horng-Chaung

    2010-03-15

    Purpose: Accurate measurement of the three-dimensional (3D) rigid body and surface kinematics of the natural human knee is essential for many clinical applications. Existing techniques are limited either in their accuracy or lack more realistic experimental evaluation of the measurement errors. The purposes of the study were to develop a volumetric model-based 2D to 3D registration method, called the weighted edge-matching score (WEMS) method, for measuring natural knee kinematics with single-plane fluoroscopy to determine experimentally the measurement errors and to compare its performance with that of pattern intensity (PI) and gradient difference (GD) methods. Methods: The WEMS method gives higher priority to matching of longer edges of the digitally reconstructed radiograph and fluoroscopic images. The measurement errors of the methods were evaluated based on a human cadaveric knee at 11 flexion positions. Results: The accuracy of the WEMS method was determined experimentally to be less than 0.77 mm for the in-plane translations, 3.06 mm for out-of-plane translation, and 1.13 deg. for all rotations, which is better than that of the PI and GD methods. Conclusions: A new volumetric model-based 2D to 3D registration method has been developed for measuring 3D in vivo kinematics of natural knee joints with single-plane fluoroscopy. With the equipment used in the current study, the accuracy of the WEMS method is considered acceptable for the measurement of the 3D kinematics of the natural knee in clinical applications.

  2. Case study: Beauty and the Beast 3D: benefits of 3D viewing for 2D to 3D conversion

    NASA Astrophysics Data System (ADS)

    Handy Turner, Tara

    2010-02-01

    From the earliest stages of the Beauty and the Beast 3D conversion project, the advantages of accurate desk-side 3D viewing was evident. While designing and testing the 2D to 3D conversion process, the engineering team at Walt Disney Animation Studios proposed a 3D viewing configuration that not only allowed artists to "compose" stereoscopic 3D but also improved efficiency by allowing artists to instantly detect which image features were essential to the stereoscopic appeal of a shot and which features had minimal or even negative impact. At a time when few commercial 3D monitors were available and few software packages provided 3D desk-side output, the team designed their own prototype devices and collaborated with vendors to create a "3D composing" workstation. This paper outlines the display technologies explored, final choices made for Beauty and the Beast 3D, wish-lists for future development and a few rules of thumb for composing compelling 2D to 3D conversions.

  3. Characterizing Kinematics of Passive Tracer Paths in Simulations of Mantle Convection in a 3D Spherical Shell

    NASA Astrophysics Data System (ADS)

    Peterson, J. A.; Schröder, S.; Heien, E. M.; Turcotte, D. L.; Kellogg, L. H.

    2011-12-01

    Geochemical evidence from mantle-derived basalt at mid-ocean ridges and oceanic islands reveal a spectrum of heterogeneity in the mantle, with much of the MORB source largely homogeneous, while other regions may remain isolated for billions of years. Heterogeneity appears in MORB at all scales, as would be expected from sampling a marble-cake structure in the upper mantle. The origin of these diverse mantle reservoirs is poorly understood. In particular, although stirring has been studied extensively in 2D models of mantle convection and in 3D flows in a Cartesian box, the kinematics of mixing due to thermal convection in a 3D spherical shell is not well-characterized. To quantitatively investigate the mechanisms of stirring, we use the finite element model CitComS to carry out a series of models of convection in a spherical shell at low to moderate Rayleigh number. We use passive tracers as proxies for geochemical heterogeneity. We investigate both low-Rayleigh number isoviscous flows for which the pattern of convection reaches steady state, as well as the influence on stirring of the transition to time-varying flows. For each model, after the initial transient has passed, a field of particles is added and advected forward in time. We modified the passive tracer advection in CitcomS to enable precise long-term tracking of individual tracers. The particle paths are then visualized and quantitative measures of mixing are applied, such as the divergence of initial neighbors. Regions where particles do not intermix are located and residence times are calculated to determine the stability of the isolated regions.

  4. In vivo measurement of the 3D kinematics of the temporomandibular joint using miniaturized electromagnetic trackers: technical report.

    PubMed

    Baeyens, J-P; Gilomen, H; Erdmann, B; Clijsen, R; Cabri, J; Vissers, D

    2013-04-01

    The aim of this study was to evaluate the use of miniaturized electromagnetic trackers (1 × 0.5 × 0.5 cm) fixed on teeth of the maxilla and mandible to analyse in vivo the 3D kinematics of the temporomandibular joint (TMJ). A third sensor was fixed to the forehead, and a fourth sensor was used as a stylus pointer to detect several anatomical landmarks in order to embed a local frame on the cranium. Temporomandibular opening/closing, chewing, laterotrusion and protrusion were examined. The prime objective within this study was to rigidly attach electromagnetic minisensors on teeth. The key for a successful affixation was the kevlar interface. The distances between the two mandibular affixed sensors and between the two maxillar affixed sensors were overall smaller than 0.033 cm for position and 0.2° for attitude throughout the temporomandibular motions. The relative motions between a forehead sensor and the maxilla affixed sensor are too big to suggest a forehead sensor as an alternative for a maxilla affixed sensor. The technique using miniaturized electromagnetic trackers furthers on the methods using electromagnetic trackers on external appliances. The method allows full range of motion of the TMJ and does not disturb normal TMJ function.

  5. Real-Time Motion Capture Toolbox (RTMocap): an open-source code for recording 3-D motion kinematics to study action-effect anticipations during motor and social interactions.

    PubMed

    Lewkowicz, Daniel; Delevoye-Turrell, Yvonne

    2016-03-01

    We present here a toolbox for the real-time motion capture of biological movements that runs in the cross-platform MATLAB environment (The MathWorks, Inc., Natick, MA). It provides instantaneous processing of the 3-D movement coordinates of up to 20 markers at a single instant. Available functions include (1) the setting of reference positions, areas, and trajectories of interest; (2) recording of the 3-D coordinates for each marker over the trial duration; and (3) the detection of events to use as triggers for external reinforcers (e.g., lights, sounds, or odors). Through fast online communication between the hardware controller and RTMocap, automatic trial selection is possible by means of either a preset or an adaptive criterion. Rapid preprocessing of signals is also provided, which includes artifact rejection, filtering, spline interpolation, and averaging. A key example is detailed, and three typical variations are developed (1) to provide a clear understanding of the importance of real-time control for 3-D motion in cognitive sciences and (2) to present users with simple lines of code that can be used as starting points for customizing experiments using the simple MATLAB syntax. RTMocap is freely available (http://sites.google.com/site/RTMocap/) under the GNU public license for noncommercial use and open-source development, together with sample data and extensive documentation.

  6. CASTOR3D: linear stability studies for 2D and 3D tokamak equilibria

    NASA Astrophysics Data System (ADS)

    Strumberger, E.; Günter, S.

    2017-01-01

    The CASTOR3D code, which is currently under development, is able to perform linear stability studies for 2D and 3D, ideal and resistive tokamak equilibria in the presence of ideal and resistive wall structures and coils. For these computations ideal equilibria represented by concentric nested flux surfaces serve as input (e.g. computed with the NEMEC code). Solving an extended eigenvalue problem, the CASTOR3D code takes simultaneously plasma inertia and wall resistivity into account. The code is a hybrid of the CASTOR_3DW stability code and the STARWALL code. The former is an extended version of the CASTOR and CASTOR_FLOW code, respectively. The latter is a linear 3D code computing the growth rates of resistive wall modes in the presence of multiply-connected wall structures. The CASTOR_3DW code, and some parts of the STARWALL code have been reformulated in a general 3D flux coordinate representation that allows to choose between various types of flux coordinates. Furthermore, the implemented many-valued current potentials in the STARWALL part allow a correct treatment of the m  =  0, n  =  0 perturbation. In this paper, we outline the theoretical concept, and present some numerical results which illustrate the present status of the code and demonstrate its numerous application possibilities.

  7. Instantaneous helical axis estimation from 3-D video data in neck kinematics for whiplash diagnostics.

    PubMed

    Woltring, H J; Long, K; Osterbauer, P J; Fuhr, A W

    1994-12-01

    To date, the diagnosis of whiplash injuries has been very difficult and largely based on subjective, clinical assessment. The work by Winters and Peles Multiple Muscle Systems--Biomechanics and Movement Organization. Springer, New York (1990) suggests that the use of finite helical axes (FHAs) in the neck may provide an objective assessment tool for neck mobility. Thus, the position of the FHA describing head-trunk motion may allow discrimination between normal and pathological cases such as decreased mobility in particular cervical joints. For noisy, unsmoothed data, the FHAs must be taken over rather large angular intervals if the FHAs are to be reconstructed with sufficient accuracy; in the Winters and Peles study, these intervals were approximately 10 degrees. in order to study the movements' microstructure, the present investigation uses instantaneous helical axes (IHAs) estimated from low-pass smoothed video data. Here, the small-step noise sensitivity of the FHA no longer applies, and proper low-pass filtering allows estimation of the IHA even for small rotation velocity omega of the moving neck. For marker clusters mounted on the head and trunk, technical system validation showed that the IHAs direction dispersions were on the order of one degree, while their position dispersions were on the order of 1 mm, for low-pass cut-off frequencies of a few Hz (the dispersions were calculated from omega-weighted errors, in order to account for the adverse effects of vanishing omega). Various simple, planar models relating the instantaneous, 2-D centre of rotation with the geometry and kinematics of a multi-joint neck model are derived, in order to gauge the utility of the FHA and IHA approaches. Some preliminary results on asymptomatic and pathological subjects are provided, in terms of the 'ruled surface' formed by sampled IHAs and of their piercing points through the mid-sagittal plane during a prescribed flexion-extension movement of the neck.

  8. The development, preliminary validation and clinical utility of a shoe model to quantify foot and footwear kinematics in 3-D.

    PubMed

    Pratt, Emma J; Reeves, Mark L; van der Meulen, Jill M; Heller, Ben W; Good, Tim R

    2012-07-01

    Functional electrical stimulation (FES) applied to the common peroneal nerve is commonly prescribed to correct both equinus and excessive foot inversion in swing and initial contact. This paper presents the development of a simple shoe model, to allow quantification of 3-D shoe (foot and footwear) kinematics in clinical situations when footwear is required, e.g. with FES systems requiring footswitches. To preliminarily validate the shoe model, barefoot 'normal' adult data (n=11) processed using validated 3-D foot models, were reprocessed with the shoe model. Outputs were compared through calculation of waveform similarity and correlation. Clinical utility of the shoe model is demonstrated through the presentation of 3-D shoe kinematics, calculated from a cohort of existing unilateral common peroneal FES users (n=16), both with and without FES. A trend of reduced inversion at mid-swing and initial contact was seen, although this was not found to be statistically significant (p≤0.0125). The shoe model was found to be practical to use in a clinical environment, and has potential to contribute to the evidence base for interventions such as common peroneal FES.

  9. 3D shoulder kinematics for static vs dynamic and passive vs active testing conditions.

    PubMed

    Robert-Lachaine, Xavier; Allard, Paul; Godbout, Véronique; Begon, Mickael

    2015-09-18

    Shoulder motion analysis provides clinicians with references of normal joint rotations. Shoulder joints orientations assessment is often based on series of static positions, while clinicians perform either passive or active tests and exercises mostly in dynamic. These conditions of motion could modify joint coordination and lead to discrepancies with the established references. Hence, the objective was to evaluate the influence of static vs dynamic and passive vs active testing conditions on shoulder joints orientations. Twenty asymptomatic subjects setup with 45 markers on the upper limb and trunk were tracked by an optoelectronic system. Static positions (30°, 60°, 90° and 120° of thoracohumeral elevation) and dynamic motion both in active condition and passively mobilised by an examiner were executed. Three-dimensional sternoclavicular, acromioclavicular, scapulothoracic and glenohumeral joint angles (12 in total) representing the distal segment orientation relative to the proximal segment orientation were estimated using a shoulder kinematical chain model. Separate four-way repeated measures ANOVA were applied on the 12 joint angles with factors of static vs dynamic, passive vs active, thoracohumeral elevation angle (30°, 60°, 90° and 120°) and plane of elevation (frontal and sagittal). Scapulothoracic lateral rotation progressed more during arm elevation in static than in dynamic gaining 4.2° more, and also in passive than in active by 6.6°. Glenohumeral elevation increased more during arm elevation in active than in passive by 4.4°. Shoulder joints orientations are affected by the testing conditions, which should be taken into consideration for data acquisition, inter-study comparison or clinical applications.

  10. A methodology to accurately quantify patellofemoral cartilage contact kinematics by combining 3D image shape registration and cine-PC MRI velocity data.

    PubMed

    Borotikar, Bhushan S; Sipprell, William H; Wible, Emily E; Sheehan, Frances T

    2012-04-05

    Patellofemoral osteoarthritis and its potential precursor patellofemoral pain syndrome (PFPS) are common, costly, and debilitating diseases. PFPS has been shown to be associated with altered patellofemoral joint mechanics; however, an actual variation in joint contact stresses has not been established due to challenges in accurately quantifying in vivo contact kinematics (area and location). This study developed and validated a method for tracking dynamic, in vivo cartilage contact kinematics by combining three magnetic resonance imaging (MRI) techniques, cine-phase contrast (CPC), multi-plane cine (MPC), and 3D high-resolution static imaging. CPC and MPC data were acquired from 12 healthy volunteers while they actively extended/flexed their knee within the MRI scanner. Since no gold standard exists for the quantification of in vivo dynamic cartilage contact kinematics, the accuracy of tracking a single point (patellar origin relative to the femur) represented the accuracy of tracking the kinematics of an entire surface. The accuracy was determined by the average absolute error between the PF kinematics derived through registration of MPC images to a static model and those derived through integration of the CPC velocity data. The accuracy ranged from 0.47 mm to 0.77 mm for the patella and femur and from 0.68 mm to 0.86 mm for the patellofemoral joint. For purely quantifying joint kinematics, CPC remains an analytically simpler and more accurate (accuracy <0.33 mm) technique. However, for application requiring the tracking of an entire surface, such as quantifying cartilage contact kinematics, this combined imaging approach produces accurate results with minimal operator intervention.

  11. Understanding patellofemoral pain with maltracking in the presence of joint laxity: complete 3D in vivo patellofemoral and tibiofemoral kinematics.

    PubMed

    Sheehan, Frances T; Derasari, Aditya; Brindle, Timothy J; Alter, Katharine E

    2009-05-01

    Patellofemoral pain is widely accepted as one of the most common pathologies involving the knee, yet the etiology of this pain is still an open debate. Generalized joint laxity has been associated with patellofemoral pain, but is not often discussed as a potential source of patellar maltracking. Thus, the objective of this study was to compare the complete 6 degree of freedom patellofemoral and tibiofemoral kinematics from a group of patients diagnosed with patellofemoral pain syndrome and maltracking to those from an asymptomatic population. The following null hypotheses were tested: kinematic alterations in patellofemoral maltracking are limited to the axial plane; knee joint kinematics are the same in maltrackers with and without generalized joint laxity (defined by a clinical diagnosis of Ehlers Danlos Syndrome); and no correlations exist between tibiofemoral and patellofemoral kinematics or within patellofemoral kinematics. This study demonstrated that alterations in patellofemoral kinematics, associated with patellofemoral pain, are not limited to the axial plane, minimal correlations exist between patellofemoral and tibiofemoral kinematics, and distinct subgroups likely exist within the general population of maltrackers. Being able to identify subgroups correctly within the omnibus diagnosis of patellar maltracking is a crucial step in correctly defining the pathophysiology and the eventual treatment of these patients.

  12. Global and regional kinematics of the cervical spine during upper cervical spine manipulation: a reliability analysis of 3D motion data.

    PubMed

    Dugailly, Pierre-Michel; Beyer, Benoît; Sobczak, Stéphane; Salvia, Patrick; Feipel, Véronique

    2014-10-01

    Studies reporting spine kinematics during cervical manipulation are usually related to continuous global head-trunk motion or discrete angular displacements for pre-positioning. To date, segmental data analyzing continuous kinematics of cervical manipulation is lacking. The objective of this study was to investigate upper cervical spine (UCS) manipulation in vitro. This paper reports an inter- and intra-rater reliability analysis of kinematics during high velocity low amplitude manipulation of the UCS. Integration of kinematics into specific-subject 3D models has been processed as well for providing anatomical motion representation during thrust manipulation. Three unembalmed specimens were included in the study. Restricted dissection was realized to attach technical clusters to each bone of interest (skull, C1-C4 and sternum). During manipulation, bone motion data was computed using an optoelectronic system. The reliability of manipulation kinematics was assessed for three experimented practitioners performing two trials of 3 repetitions on two separate days. During UCS manipulation, average global head-trunk motion ROM (±SD) were 14 ± 5°, 35 ± 7° and 14 ± 8° for lateral bending, axial rotation and flexion-extension, respectively. For regional ROM (C0-C2), amplitudes were 10 ± 5°, 30 ± 5° and 16 ± 4° for the same respective motions. Concerning the reliability, mean RMS ranged from 1° to 4° and from 3° to 6° for intra- and inter-rater comparisons, respectively. The present results confirm the limited angular displacement during manipulation either for global head-trunk or for UCS motion components, especially for axial rotation. Additionally, kinematics variability was low confirming intra- and inter-practitioners consistency of UCS manipulation achievement.

  13. 3D kinematic measurement of human movement using low cost fish-eye cameras

    NASA Astrophysics Data System (ADS)

    Islam, Atiqul; Asikuzzaman, Md.; Garratt, Matthew A.; Pickering, Mark R.

    2017-02-01

    3D motion capture is difficult when the capturing is performed in an outdoor environment without controlled surroundings. In this paper, we propose a new approach of using two ordinary cameras arranged in a special stereoscopic configuration and passive markers on a subject's body to reconstruct the motion of the subject. Firstly for each frame of the video, an adaptive thresholding algorithm is applied for extracting the markers on the subject's body. Once the markers are extracted, an algorithm for matching corresponding markers in each frame is applied. Zhang's planar calibration method is used to calibrate the two cameras. As the cameras use the fisheye lens, they cannot be well estimated using a pinhole camera model which makes it difficult to estimate the depth information. In this work, to restore the 3D coordinates we use a unique calibration method for fisheye lenses. The accuracy of the 3D coordinate reconstruction is evaluated by comparing with results from a commercially available Vicon motion capture system.

  14. The Use of IMMUs in a Water Environment: Instrument Validation and Application of 3D Multi-Body Kinematic Analysis in Medicine and Sport

    PubMed Central

    Mangia, Anna Lisa; Cortesi, Matteo; Fantozzi, Silvia; Giovanardi, Andrea; Borra, Davide; Gatta, Giorgio

    2017-01-01

    The aims of the present study were the instrumental validation of inertial-magnetic measurements units (IMMUs) in water, and the description of their use in clinical and sports aquatic applications applying customized 3D multi-body models. Firstly, several tests were performed to map the magnetic field in the swimming pool and to identify the best volume for experimental test acquisition with a mean dynamic orientation error lower than 5°. Successively, the gait and the swimming analyses were explored in terms of spatiotemporal and joint kinematics variables. The extraction of only spatiotemporal parameters highlighted several critical issues and the joint kinematic information has shown to be an added value for both rehabilitative and sport training purposes. Furthermore, 3D joint kinematics applied using the IMMUs provided similar quantitative information than that of more expensive and bulky systems but with a simpler and faster setup preparation, a lower time consuming processing phase, as well as the possibility to record and analyze a higher number of strides/strokes without limitations imposed by the cameras. PMID:28441739

  15. The Use of IMMUs in a Water Environment: Instrument Validation and Application of 3D Multi-Body Kinematic Analysis in Medicine and Sport.

    PubMed

    Mangia, Anna Lisa; Cortesi, Matteo; Fantozzi, Silvia; Giovanardi, Andrea; Borra, Davide; Gatta, Giorgio

    2017-04-22

    The aims of the present study were the instrumental validation of inertial-magnetic measurements units (IMMUs) in water, and the description of their use in clinical and sports aquatic applications applying customized 3D multi-body models. Firstly, several tests were performed to map the magnetic field in the swimming pool and to identify the best volume for experimental test acquisition with a mean dynamic orientation error lower than 5°. Successively, the gait and the swimming analyses were explored in terms of spatiotemporal and joint kinematics variables. The extraction of only spatiotemporal parameters highlighted several critical issues and the joint kinematic information has shown to be an added value for both rehabilitative and sport training purposes. Furthermore, 3D joint kinematics applied using the IMMUs provided similar quantitative information than that of more expensive and bulky systems but with a simpler and faster setup preparation, a lower time consuming processing phase, as well as the possibility to record and analyze a higher number of strides/strokes without limitations imposed by the cameras.

  16. Performing Accurate Rigid Kinematics Measurements from 3D in vivo Image Sequences through Median Consensus Simultaneous Registration.

    PubMed

    Cresson, T; Jacq, J; Burdin, V; Roux, Ch

    2005-01-01

    While focusing at accurate 3D joint kinematics, this paper explores the problem of how to perform a robust rigid registration for a sequence of object surfaces observed using standard 3D medical imaging techniques. Each object instance is assumed to give access to a polyhedral encoding of its boundary. We consider the case where object instances are noised with significant truncations and segmentation errors. The proposed method aims to tackle this problem in a global way, fully exploiting the duality between redundancy and complementarity of the available instances set. The algorithm operates through robust and simultaneous registration of all geometrical instances on a virtual instance accounting for their median consensus. When compared with standard robust techniques, trials reveal significant gains, as much in robustness as in accuracy. The considered applications are mainly focused on generating highly accurate kinematics in relation to the bone structures of the most complex joints - the tarsus and the carpus - for which no alternative examination techniques exist, enabling fine morphological analysis as well as access to internal joint motions.

  17. Polyphase tertiary fold-and-thrust tectonics in the Belluno Dolomites: new mapping, kinematic analysis, and 3D modelling

    NASA Astrophysics Data System (ADS)

    Chistolini, Filippo; Bistacchi, Andrea; Massironi, Matteo; Consonni, Davide; Cortinovis, Silvia

    2014-05-01

    The Belluno Dolomites are comprised in the eastern sector of the Southern Alps, which corresponds to the fold-and-thrust belt at the retro-wedge of the Alpine collisional orogen. They are characterized by a complex and polyphase fold-and-thrust tectonics, highlighted by multiple thrust sheets and thrust-related folding. We have studied this tectonics in the Vajont area where a sequence of Jurassic, Cretaceous and Tertiary units have been involved in multiple deformations. The onset of contractional tectonics in this part of the Alps is constrained to be Tertiary (likely Post-Eocene) by structural relationships with the Erto Flysch, whilst in the Mesozoic tectonics was extensional. We have recognized two contractional deformation phases (D1 and D2 in the following), of which only the second was mentioned in previous studies of the area and attributed to the Miocene Neoalpine event. D1 and D2 are characterized by roughly top-to-WSW (possibly Dinaric) and top-to-S (Alpine) transport directions respectively, implying a 90° rotation of the regional-scale shortening axis, and resulting in complex thrust and fold interference and reactivation patterns. Geological mapping and detailed outcrop-scale kinematic analysis allowed us to characterize the kinematics and chronology of deformations. Particularly, relative chronology was unravelled thanks to (1) diagnostic fold interference patterns and (2) crosscutting relationships between thrust faults and thrust-related folds. A km-scale D1 syncline, filled with the Eocene Erto Flysch and "decapitated" by a D2 thrust fault, provides the best map-scale example of crosscutting relationships allowing to reconstruct the faulting history. Due to the strong competence contrast between Jurassic carbonates and Tertiary flysch, in this syncline spectacular duplexes were also developed during D2. In order to quantitatively characterize the complex interference pattern resulting from two orthogonal thrusting and folding events, we

  18. 3D Geometry and Kinematics of the Taiwan Arc-continent Collision

    NASA Astrophysics Data System (ADS)

    Carena, S.; Suppe, J.; Wu, Y. M.

    2015-12-01

    In Taiwan two subduction zones (Manila trench and Ryukyu trench) come together in a quasi-orthogonal, kinematically stable configuration. Subduction is ongoing in both trenches, even though the tectonic setting in the Manila trench is that of an arc-continent collision. The upper crust of Eurasia (EU) is decoupled from the rest of the lithosphere by a detachment horizon, which is the main subduction interface between EU and Philippine Sea plate (PSP). The interface is visible in both seismicity and crustal tomography at shallow depths, and it can be followed into the mantle to 450-500 km depth with global tomography. Shortening across the plate boundary is accomplished by a combination of subduction of EU lithosphere, folding and thrusting in the Eurasian upper crust, and a secondary subduction zone within the PSP. We hypothesize that: (1) once arc-continent collision occurs, subduction of Eurasian continental lower crust and upper mantle can continue by lithospheric delamination and by continuity with the much larger Eurasian slab to the south; (2) the upper crust of EU deforms by faulting and folding; (3) the present convergence rate of about 90 mm/yr is limited at most to the last 2 Ma, whereas the long-term rate is about 30 mm/yr and in Taiwan the difference is being taken up by secondary subduction within the PSP margin; (4) a margin-parallel STEP (Subduction-Transform-Edge-Propagator) fault forms the northern limit of Eurasian subduction, which allows the whole system to propagate self-similarly southwestward. No slab breakoff is required for the kinematics of the margin, and none is observed in geophysical or geological data either. This kinematics is consistent with geologic observations: from timing of opening of the southern Okinawa trough, to geometry of geologic boundaries within the Taiwan mountain belt, to geographic distribution, geochemical character, and timing of Quaternary volcanism in the northern Taiwan volcanic zone. We constrained the long

  19. Studying 3D Collisions with Smartphones

    ERIC Educational Resources Information Center

    Pereira, Vanda; Martin-Ramos, Pablo; da Silva, Pedro Pereira; Silva, Manuela Ramos

    2017-01-01

    This paper describes a conservation of momentum experiment using just smartphones and two beach balls, thus making the experimental study of this movement available to any classroom. For a more thorough analysis of the data, a computer can also be used. Experiments making use of smartphone sensors have been described before, contributing to an…

  20. Automated kinematic modelling of warped galaxy discs in large H I surveys: 3D tilted-ring fitting of H I emission cubes

    NASA Astrophysics Data System (ADS)

    Kamphuis, P.; Józsa, G. I. G.; Oh, S.-. H.; Spekkens, K.; Urbancic, N.; Serra, P.; Koribalski, B. S.; Dettmar, R.-J.

    2015-09-01

    Kinematical parametrizations of disc galaxies, employing emission line observations, are indispensable tools for studying the formation and evolution of galaxies. Future large-scale H I surveys will resolve the discs of many thousands of galaxies, allowing a statistical analysis of their disc and halo kinematics, mass distribution and dark matter content. Here, we present an automated procedure which fits tilted-ring models to H I data cubes of individual, well-resolved galaxies. The method builds on the 3D Tilted Ring Fitting Code (TIRIFIC) and is called Fully Automated TIRIFIC (FAT). To assess the accuracy of the code, we apply it to a set of 52 artificial galaxies and 25 real galaxies from the Local Volume H I Survey (LVHIS). Using LVHIS data, we compare our 3D modelling to the 2D modelling methods DISKFIT and ROTCUR. A conservative result is that FAT accurately models the kinematics and the morphologies of galaxies with an extent of eight beams across the major axis in the inclination range 20°-90° without the need for priors such as disc inclination. When comparing to 2D methods we find that velocity fields cannot be used to determine inclinations in galaxies that are marginally resolved. We conclude that with the current code tilted-ring models can be produced in a fully automated fashion. This will be essential for future H I surveys, with the Square Kilometre Array and its pathfinders, which will allow us to model the gas kinematics of many thousands of well-resolved galaxies. Performance studies of FAT close to our conservative limits, as well as the introduction of more parametrized models will open up the possibility to study even less resolved galaxies.

  1. Kinematic analysis of healthy hips during weight-bearing activities by 3D-to-2D model-to-image registration technique.

    PubMed

    Hara, Daisuke; Nakashima, Yasuharu; Hamai, Satoshi; Higaki, Hidehiko; Ikebe, Satoru; Shimoto, Takeshi; Hirata, Masanobu; Kanazawa, Masayuki; Kohno, Yusuke; Iwamoto, Yukihide

    2014-01-01

    Dynamic hip kinematics during weight-bearing activities were analyzed for six healthy subjects. Continuous X-ray images of gait, chair-rising, squatting, and twisting were taken using a flat panel X-ray detector. Digitally reconstructed radiographic images were used for 3D-to-2D model-to-image registration technique. The root-mean-square errors associated with tracking the pelvis and femur were less than 0.3 mm and 0.3° for translations and rotations. For gait, chair-rising, and squatting, the maximum hip flexion angles averaged 29.6°, 81.3°, and 102.4°, respectively. The pelvis was tilted anteriorly around 4.4° on average during full gait cycle. For chair-rising and squatting, the maximum absolute value of anterior/posterior pelvic tilt averaged 12.4°/11.7° and 10.7°/10.8°, respectively. Hip flexion peaked on the way of movement due to further anterior pelvic tilt during both chair-rising and squatting. For twisting, the maximum absolute value of hip internal/external rotation averaged 29.2°/30.7°. This study revealed activity dependent kinematics of healthy hip joints with coordinated pelvic and femoral dynamic movements. Kinematics' data during activities of daily living may provide important insight as to the evaluating kinematics of pathological and reconstructed hips.

  2. Evaluation of the Kinect™ sensor for 3-D kinematic measurement in the workplace.

    PubMed

    Dutta, Tilak

    2012-07-01

    Recording posture and movement is important for determining risk of musculoskeletal injury in the workplace, but existing motion capture systems are not suited for field work. Estimates of the 3-D relative positions of four 0.10 m cubes from the Kinect were compared to estimates from a Vicon motion capture system to determine whether the hardware sensing components were sensitive enough to be used as a portable 3-D motion capture system for workplace ergonomic assessments. The root-mean-squared errors (SD) were 0.0065 m (0.0048 m), 0.0109 m (0.0059 m), 0.0057 m (0.0042 m) in the x, y and z directions (with x axis to the right, y axis away from the sensor and z axis upwards). These data were collected over a range of 1.0-3.0m from the device covering a field of view of 54.0 degrees horizontally and 39.1 degrees vertically. Requirements for software, hardware and subject preparation were also considered to determine the usability of the Kinect in the field.

  3. Studying 3D collisions with smartphones

    NASA Astrophysics Data System (ADS)

    Pereira, Vanda; Martín-Ramos, Pablo; da Silva, Pedro Pereira; Silva, Manuela Ramos

    2017-05-01

    This paper describes a conservation of momentum experiment using just smartphones and two beach balls, thus making the experimental study of this movement available to any classroom. For a more thorough analysis of the data, a computer can also be used. Experiments making use of smartphone sensors have been described before, contributing to an improved teaching of classical mechanics. In this experiment, we have made use of two smartphone cameras together with the VidAnalysis free app to track the position of two balls colliding in air during a projectile motion (Fig. 1).

  4. Accuracy assessment of Tri-plane B-mode ultrasound for non-invasive 3D kinematic analysis of knee joints.

    PubMed

    Masum, Md Abdullah; Pickering, Mark; Lambert, Andrew; Scarvell, Jennie; Smith, Paul

    2014-08-26

    Currently the clinical standard for measuring the motion of the bones in knee joints with sufficient precision involves implanting tantalum beads into the bones. These beads appear as high intensity features in radiographs and can be used for precise kinematic measurements. This procedure imposes a strong coupling between accuracy and invasiveness. In this paper, a tri-plane B-mode ultrasound (US) based non-invasive approach is proposed for use in kinematic analysis of knee joints in 3D space. The 3D analysis is performed using image processing procedures on the 2D US slices. The novelty of the proposed procedure and its applicability to the unconstrained 3D kinematic analysis of knee joints is outlined. An error analysis for establishing the method's feasibility is included for different artificial compositions of a knee joint phantom. Some in-vivo and in-vitro scans are presented to demonstrate that US scans reveal enough anatomical details, which further supports the experimental setup used using knee bone phantoms. The error between the displacements measured by the registration of the US image slices and the true displacements of the respective slices measured using the precision mechanical stages on the experimental apparatus is evaluated for translation and rotation in two simulated environments. The mean and standard deviation of errors are shown in tabular form. This method provides an average measurement precision of less than 0.1 mm and 0.1 degrees, respectively. In this paper, we have presented a novel non-invasive approach to measuring the motion of the bones in a knee using tri-plane B-mode ultrasound and image registration. In our study, the image registration method determines the position of bony landmarks relative to a B-mode ultrasound sensor array with sub-pixel accuracy. The advantages of our proposed system over previous techniques are that it is non-invasive, does not require the use of ionizing radiation and can be used conveniently if

  5. In Vivo Kinematics of the Anterior Cruciate Ligament Deficient Knee During Wide-Based Squat Using a 2D/3D Registration Technique.

    PubMed

    Miyaji, Takeshi; Gamada, Kazuyoshi; Kidera, Kenichi; Ikuta, Futoshi; Yoneta, Kei; Shindo, Hiroyuki; Osaki, Makoto; Yonekura, Akihiko

    2012-01-01

    Anterior cruciate ligament (ACL) deficiency increases the risk of early osteoarthritis (OA). Studies of ACL deficient knee kinematics would be important to reveal the disease process and therefore to find mechanisms which would potentially slow OA progression. The purpose of this study was to determine if in vivo kinematics of the anterior cruciate ligament deficient (ACLD) knee during a wide-based squat activity differ from kinematics of the contralateral intact knee. Thirty-three patients with a unilateral ACLD knee consented to participate in this institutional review board approved study with the contralateral intact knee serving as the control. In vivo knee kinematics during the wide-based squat were analyzed using a 2D/3D registration technique utilizing CT-based bone models and lateral fluoroscopy. Comparisons were performed using values between 0 and 100° flexion both in flexion and extension phases of the squat activity. Both the ACLD and intact knees demonstrated increasing tibial internal rotation with knee flexion, and no difference was observed in tibial rotation between the groups. The tibia in the ACLD knee was more anterior than that of the contralateral knees at 0 and 5° flexion in both phases (p < 0.05). Tibiofemoral medial contact points of the ACLD knees were more posterior than that of the contralateral knees at 5, 10 and 15° of knee flexion in the extension phase of the squat activity (p < 0.05). Tibiofemoral lateral contact points of the ACLD knees were more posterior than that of the contralateral knees at 0° flexion in the both phases (p < 0.05). The kinematics of the ACLD and contralateral intact knees were similar during the wide-based squat except at the low flexion angles. Therefore, we conclude the wide-based squat may be recommended for the ACLD knee by avoiding terminal extension.

  6. 2D vs. 3D mammography observer study

    NASA Astrophysics Data System (ADS)

    Fernandez, James Reza F.; Hovanessian-Larsen, Linda; Liu, Brent

    2011-03-01

    Breast cancer is the most common type of non-skin cancer in women. 2D mammography is a screening tool to aid in the early detection of breast cancer, but has diagnostic limitations of overlapping tissues, especially in dense breasts. 3D mammography has the potential to improve detection outcomes by increasing specificity, and a new 3D screening tool with a 3D display for mammography aims to improve performance and efficiency as compared to 2D mammography. An observer study using a mammography phantom was performed to compare traditional 2D mammography with this ne 3D mammography technique. In comparing 3D and 2D mammography there was no difference in calcification detection, and mass detection was better in 2D as compared to 3D. There was a significant decrease in reading time for masses, calcifications, and normals in 3D compared to 2D, however, as well as more favorable confidence levels in reading normal cases. Given the limitations of the mammography phantom used, however, a clearer picture in comparing 3D and 2D mammography may be better acquired with the incorporation of human studies in the future.

  7. Image based 3D city modeling : Comparative study

    NASA Astrophysics Data System (ADS)

    Singh, S. P.; Jain, K.; Mandla, V. R.

    2014-06-01

    3D city model is a digital representation of the Earth's surface and it's related objects such as building, tree, vegetation, and some manmade feature belonging to urban area. The demand of 3D city modeling is increasing rapidly for various engineering and non-engineering applications. Generally four main image based approaches were used for virtual 3D city models generation. In first approach, researchers were used Sketch based modeling, second method is Procedural grammar based modeling, third approach is Close range photogrammetry based modeling and fourth approach is mainly based on Computer Vision techniques. SketchUp, CityEngine, Photomodeler and Agisoft Photoscan are the main softwares to represent these approaches respectively. These softwares have different approaches & methods suitable for image based 3D city modeling. Literature study shows that till date, there is no complete such type of comparative study available to create complete 3D city model by using images. This paper gives a comparative assessment of these four image based 3D modeling approaches. This comparative study is mainly based on data acquisition methods, data processing techniques and output 3D model products. For this research work, study area is the campus of civil engineering department, Indian Institute of Technology, Roorkee (India). This 3D campus acts as a prototype for city. This study also explains various governing parameters, factors and work experiences. This research work also gives a brief introduction, strengths and weakness of these four image based techniques. Some personal comment is also given as what can do or what can't do from these softwares. At the last, this study shows; it concluded that, each and every software has some advantages and limitations. Choice of software depends on user requirements of 3D project. For normal visualization project, SketchUp software is a good option. For 3D documentation record, Photomodeler gives good result. For Large city

  8. True 3D kinematic analysis for slope instability assessment in the Siq of Petra (Jordan), from high resolution TLS

    NASA Astrophysics Data System (ADS)

    Gigli, Giovanni; Margottini, Claudio; Spizzichino, Daniele; Ruther, Heinz; Casagli, Nicola

    2016-04-01

    released, stratigraphic setting and tectonic activity can be recognized. As a consequence, rock-falls have been occurring, even recently, with unstable rock mass volumes ranging from 0.1 m3 up to over some hundreds m3. Slope instability, acceleration of crack deformation and consequent increasing of rock-fall hazard conditions, could threaten the safety of tourist as well as the integrity of the heritage. 3D surface model coming from Terrestrial Laser Scanner acquisitions was developed almost all over the site of Petra, including the Siq. Comprehensively, a point cloud of five billion points was generated making the site of Petra likely the largest scanned archaeological site in the word. As far as the Siq, the scanner was positioned on the path floor at intervals of not more than 10 meters from each station. The total number of scans in the Siq was 220 with an average point cloud interval of approximately 3 cm. Subsequently, for the definition of the main rockfall source areas, a spatial kinematic analysis for the whole Siq has been performed, by using discontinuity orientation data extracted from the point cloud by means of the software Diana. Orientation, number of sets, spacing/frequency, persistence, block size and scale dependent roughness was obtained combining fieldwork and automatic analysis. This kind of analysis is able to establish where a particular instability mechanism is kinematically feasible, given the geometry of the slope, the orientation of discontinuities and shear strength of the rock. The final outcome of this project was a detail landslide kinematic index map, reporting main potential instability mechanisms for a given area. The kinematic index was finally calibrated for each instability mechanism (plane failure; wedge failure; block toppling; flexural toppling) surveyed in the site. The latter is including the collapse occurred in May 2015, likely not producing any victim, in a sector clearly identified by the susceptibility maps produced by the

  9. GestAction3D: A Platform for Studying Displacements and Deformations of 3D Objects Using Hands

    NASA Astrophysics Data System (ADS)

    Lingrand, Diane; Renevier, Philippe; Pinna-Déry, Anne-Marie; Cremaschi, Xavier; Lion, Stevens; Rouel, Jean-Guilhem; Jeanne, David; Cuisinaud, Philippe; Soula*, Julien

    We present a low-cost hand-based device coupled with a 3D motion recovery engine and 3D visualization. This platform aims at studying ergonomic 3D interactions in order to manipulate and deform 3D models by interacting with hands on 3D meshes. Deformations are done using different modes of interaction that we will detail in the paper. Finger extremities are attached to vertices, edges or facets. Switching from one mode to another or changing the point of view is done using gestures. The determination of the more adequate gestures is part of the work

  10. M3D project for simulation studies of plasmas

    SciTech Connect

    Park, W.; Belova, E.V.; Fu, G.Y.; Strauss, H.R.; Sugiyama, L.E.

    1998-12-31

    The M3D (Multi-level 3D) project carries out simulation studies of plasmas of various regimes using multi-levels of physics, geometry, and mesh schemes in one code package. This paper and papers by Strauss, Sugiyama, and Belova in this workshop describe the project, and present examples of current applications. The currently available physics models of the M3D project are MHD, two-fluids, gyrokinetic hot particle/MHD hybrid, and gyrokinetic particle ion/two-fluid hybrid models. The code can be run with both structured and unstructured meshes.

  11. Autonomous surgical robotics using 3-D ultrasound guidance: feasibility study.

    PubMed

    Whitman, John; Fronheiser, Matthew P; Ivancevich, Nikolas M; Smith, Stephen W

    2007-10-01

    The goal of this study was to test the feasibility of using a real-time 3D (RT3D) ultrasound scanner with a transthoracic matrix array transducer probe to guide an autonomous surgical robot. Employing a fiducial alignment mark on the transducer to orient the robot's frame of reference and using simple thresholding algorithms to segment the 3D images, we tested the accuracy of using the scanner to automatically direct a robot arm that touched two needle tips together within a water tank. RMS measurement error was 3.8% or 1.58 mm for an average path length of 41 mm. Using these same techniques, the autonomous robot also performed simulated needle biopsies of a cyst-like lesion in a tissue phantom. This feasibility study shows the potential for 3D ultrasound guidance of an autonomous surgical robot for simple interventional tasks, including lesion biopsy and foreign body removal.

  12. NGT-3D: a simple nematode cultivation system to study Caenorhabditis elegans biology in 3D.

    PubMed

    Lee, Tong Young; Yoon, Kyoung-Hye; Lee, Jin Il

    2016-04-15

    The nematodeCaenorhabditiselegansis one of the premier experimental model organisms today. In the laboratory, they display characteristic development, fertility, and behaviors in a two dimensional habitat. In nature, however,C. elegansis found in three dimensional environments such as rotting fruit. To investigate the biology ofC. elegansin a 3D controlled environment we designed a nematode cultivation habitat which we term the nematode growth tube or NGT-3D. NGT-3D allows for the growth of both nematodes and the bacteria they consume. Worms show comparable rates of growth, reproduction and lifespan when bacterial colonies in the 3D matrix are abundant. However, when bacteria are sparse, growth and brood size fail to reach levels observed in standard 2D plates. Using NGT-3D we observe drastic deficits in fertility in a sensory mutant in 3D compared to 2D, and this defect was likely due to an inability to locate bacteria. Overall, NGT-3D will sharpen our understanding of nematode biology and allow scientists to investigate questions of nematode ecology and evolutionary fitness in the laboratory.

  13. NGT-3D: a simple nematode cultivation system to study Caenorhabditis elegans biology in 3D

    PubMed Central

    Lee, Tong Young; Yoon, Kyoung-hye; Lee, Jin Il

    2016-01-01

    ABSTRACT The nematode Caenorhabditis elegans is one of the premier experimental model organisms today. In the laboratory, they display characteristic development, fertility, and behaviors in a two dimensional habitat. In nature, however, C. elegans is found in three dimensional environments such as rotting fruit. To investigate the biology of C. elegans in a 3D controlled environment we designed a nematode cultivation habitat which we term the nematode growth tube or NGT-3D. NGT-3D allows for the growth of both nematodes and the bacteria they consume. Worms show comparable rates of growth, reproduction and lifespan when bacterial colonies in the 3D matrix are abundant. However, when bacteria are sparse, growth and brood size fail to reach levels observed in standard 2D plates. Using NGT-3D we observe drastic deficits in fertility in a sensory mutant in 3D compared to 2D, and this defect was likely due to an inability to locate bacteria. Overall, NGT-3D will sharpen our understanding of nematode biology and allow scientists to investigate questions of nematode ecology and evolutionary fitness in the laboratory. PMID:26962047

  14. A Preliminary Study of 3D Printing on Rock Mechanics

    NASA Astrophysics Data System (ADS)

    Jiang, Chao; Zhao, Gao-Feng

    2015-05-01

    3D printing is an innovative manufacturing technology that enables the printing of objects through the accumulation of successive layers. This study explores the potential application of this 3D printing technology for rock mechanics. Polylactic acid (PLA) was used as the printing material, and the specimens were constructed with a "3D Touch" printer that employs fused deposition modelling (FDM) technology. Unconfined compressive strength (UCS) tests and direct tensile strength (DTS) tests were performed to determine the Young's modulus ( E) and Poisson's ratio ( υ) for these specimens. The experimental results revealed that the PLA specimens exhibited elastic to brittle behaviour in the DTS tests and exhibited elastic to plastic behaviour in the UCS tests. The influence of structural changes in the mechanical response of the printed specimen was investigated; the results indicated that the mechanical response is highly influenced by the input structures, e.g., granular structure, and lattice structure. Unfortunately, our study has demonstrated that the FDM 3D printing with PLA is unsuitable for the direct simulation of rock. However, the ability for 3D printing on manufactured rock remains appealing for researchers of rock mechanics. Additional studies should focus on the development of an appropriate substitution for the printing material (brittle and stiff) and modification of the printing technology (to print 3D grains with arbitrary shapes).

  15. Assessment of in vivo 3D kinematics of cervical spine manipulation: Influence of practitioner experience and occurrence of cavitation noise.

    PubMed

    Van Geyt, Bernard; Dugailly, Pierre-Michel; Klein, Paul; Lepers, Yves; Beyer, Benoît; Feipel, Véronique

    2017-04-01

    Investigations on 3D kinematics during spinal manipulation are widely reported for assessing motion data, task reliability and clinical effects. However the link between cavitation occurrence and specific kinematics remains questionable. This paper investigates the 3D head-trunk kinematics during high velocity low amplitude (HVLA) manipulation for different practitioners with respect to the occurrence of cavitation. Head-trunk 3D motions were sampled during HVLA manipulation in twenty asymptomatic volunteers manipulated by four practitioners with different seniority (years of experience). Four target levels were selected, C3 and C5 on each side, and were randomly allocated to the different practitioners. The data was recorded before, during and after each set of trial in each anatomical plane. The number of trials with cavitation occurrence was collected for each practitioner. The manipulation task was performed using extension, ipsilateral side bending and contra-lateral axial rotation independent of side or target level. The displayed angular motion magnitudes did not exceed normal active ROM. Regardless cavitation occurrence, wide variations were observed between practitioners, especially in terms of velocity and acceleration. Cavitation occurrence was related to several kinematics features (i.e. frontal ROM and velocity, sagittal acceleration) and practitioner experience. In addition, multilevel cavitation was observed regularly. Kinematics of cervical manipulation is dependent on practitioner and years of experience. Cavitation occurrence could be related to particular kinematics features. These aspects should be further investigated in order to improve teaching and learning of cervical manipulation technique. Copyright © 2017 Elsevier Ltd. All rights reserved.

  16. In vivo 3D analysis of clavicular kinematics during scapular plane abduction: comparison of dominant and non-dominant shoulders.

    PubMed

    Matsuki, Keisuke; Matsuki, Kei O; Mu, Shang; Kenmoku, Tomonori; Yamaguchi, Satoshi; Ochiai, Nobuyasu; Sasho, Takahisa; Sugaya, Hiroyuki; Toyone, Tomoaki; Wada, Yuichi; Takahashi, Kazuhisa; Banks, Scott A

    2014-01-01

    The purpose of this study was to evaluate side-to-side differences in three-dimensional clavicle kinematics in normal shoulders during dynamic scapular plane elevation using model-image registration techniques. Twelve healthy males with a mean age of 32 years (range, 27-36 years old) were enrolled in this study. Clavicle rotations were computed with bilateral fluoroscopic images and CT-derived bone models using model-image registration techniques and compared between dominant and nondominant shoulders. There was no difference in retraction between both shoulders. The clavicle in dominant shoulders was less elevated during abduction than in nondominant shoulders (P=0.03). Backward rotation angles of dominant shoulders were significantly smaller than those of nondominant shoulders throughout the activity (P=0.03). Clavicular kinematics during scapular plane abduction were different according to hand-dominance.

  17. The reliability of the ELEPAP clinical protocol for the 3D kinematic evaluation of upper limb function.

    PubMed

    Vanezis, Athanasios; Robinson, Mark A; Darras, Nikolaos

    2015-02-01

    Upper limb (UL) kinematic assessment protocols are becoming integrated into clinical practice due to their development over the last few years. We propose the ELEPAP UL protocol, a contemporary UL kinematic protocol that can be applied to different pathological conditions. This model is based on ISB modeling recommendations, uses functional joint definitions, and models three joints of the shoulder girdle. The specific aim of this study was to determine the within and between session reliability of the ELEPAP UL model. Ten healthy subjects (mean age: 13.6±4.3 years) performed four reach-to-grasp and five functional tasks, which included a novel throwing task to assess a wide spectrum of motor skills. Three trials of every task in two different sessions were analyzed. The reliability of angular waveforms was evaluated by measurement error (σ) and coefficient of multiple correlation (CMC). Spatiotemporal parameters were assessed by standard error of measurement (SEM). Generally joint kinematics presented low σw and σb errors (<100). A selection of angular waveforms errors was presented to inspect error fluctuation in different phases, which was found to be related to the demands of the different movements. CMCw and CMCb values (>0.60) were found, demonstrating good to excellent reliability especially in joints with larger ranges of motion. The throwing task proved equally reliable, enhancing the universal application of the protocol. Compared to the literature, this study demonstrated higher reliability of the thorax, scapula and wrist joints. This was attributed to the highly standardized procedure and the implementation of recent methodological advancements. In conclusion, ELEPAP protocol was proved a reliable tool to analyze UL kinematics. Copyright © 2014 Elsevier B.V. All rights reserved.

  18. Jurassic extension and Cenozoic inversion tectonics in the Asturian Basin, NW Iberian Peninsula: 3D structural model and kinematic evolution

    NASA Astrophysics Data System (ADS)

    Uzkeda, Hodei; Bulnes, Mayte; Poblet, Josep; García-Ramos, José Carlos; Piñuela, Laura

    2016-09-01

    We constructed a geological map, a 3D model and cross-sections, carried out a structural analysis, determined the stress fields and tectonic transport vectors, restored a cross section and performed a subsidence analysis to unravel the kinematic evolution of the NE emerged portion of the Asturian Basin (NW Iberian Peninsula), where Jurassic rocks crop out. The major folds run NW-SE, normal faults exhibit three dominant orientations: NW-SE, NE-SW and E-W, and thrusts display E-W strikes. After Upper Triassic-Lower Jurassic thermal subsidence, Middle Jurassic doming occurred, accompanied by normal faulting, high heat flow and basin uplift, followed by Upper Jurassic high-rate basin subsidence. Another extensional event, possibly during Late Jurassic-Early Cretaceous, caused an increment in the normal faults displacement. A contractional event, probably of Cenozoic age, led to selective and irregularly distributed buttressing and fault reactivation as reverse or strike-slip faults, and folding and/or offset of some previous faults by new generation folds and thrusts. The Middle Jurassic event could be a precursor of the Bay of Biscay and North Atlantic opening that occurred from Late Jurassic to Early Cretaceous, whereas the Cenozoic event would be responsible for the Pyrenean and Cantabrian ranges and the partial closure of the Bay of Biscay.

  19. An intelligent recovery progress evaluation system for ACL reconstructed subjects using integrated 3-D kinematics and EMG features.

    PubMed

    Malik, Owais A; Senanayake, S M N Arosha; Zaheer, Dansih

    2015-03-01

    An intelligent recovery evaluation system is presented for objective assessment and performance monitoring of anterior cruciate ligament reconstructed (ACL-R) subjects. The system acquires 3-D kinematics of tibiofemoral joint and electromyography (EMG) data from surrounding muscles during various ambulatory and balance testing activities through wireless body-mounted inertial and EMG sensors, respectively. An integrated feature set is generated based on different features extracted from data collected for each activity. The fuzzy clustering and adaptive neuro-fuzzy inference techniques are applied to these integrated feature sets in order to provide different recovery progress assessment indicators (e.g., current stage of recovery, percentage of recovery progress as compared to healthy group, etc.) for ACL-R subjects. The system was trained and tested on data collected from a group of healthy and ACL-R subjects. For recovery stage identification, the average testing accuracy of the system was found above 95% (95-99%) for ambulatory activities and above 80% (80-84%) for balance testing activities. The overall recovery evaluation performed by the proposed system was found consistent with the assessment made by the physiotherapists using standard subjective/objective scores. The validated system can potentially be used as a decision supporting tool by physiatrists, physiotherapists, and clinicians for quantitative rehabilitation analysis of ACL-R subjects in conjunction with the existing recovery monitoring systems.

  20. Study of capabilities and limitations of 3D printing technology

    NASA Astrophysics Data System (ADS)

    Lemu, H. G.

    2012-04-01

    3D printing is one of the developments in rapid prototyping technology. The inception and development of the technology has highly assisted the product development phase of product design and manufacturing. The technology is particularly important in educating product design and 3D modeling because it helps students to visualize their design idea, to enhance their creative design process and enables them to touch and feel the result of their innovative work. The availability of many 3D printers on the market has created a certain level of challenge for the user. Among others, complexity of part geometry, material type, compatibility with 3D CAD models and other technical aspects still need in-depth study. This paper presents results of the experimental work on the capabilities and limitations of the Z510 3D printer from Z-corporation. Several parameters such as dimensional and geometrical accuracy, surface quality and strength as a function of model size, orientation and file exchange format are closely studied.

  1. 3D Geo-Information in Urban Climate Studies

    NASA Astrophysics Data System (ADS)

    Petrescu, F.; Aldea, M.; Luca, O.; Iacoboaea, C.; Gaman, F.; Parlow, E.

    2016-10-01

    3D geo-information is essential for urban climate studies. It is obvious that both natural environment and built-up environment play the fundamental role in defining the climatic conditions for urban areas, which affect the quality of human life and human comfort. The paper presents the main categories of 3D geo-information used in urban climate studies and roles in creating and operating the numerical models specially designed to simulate urban planning scenarios and improvement of the urban climate situation.

  2. Photogrammetric 3D skull/photo superimposition: A pilot study.

    PubMed

    Santoro, Valeria; Lubelli, Sergio; De Donno, Antonio; Inchingolo, Alessio; Lavecchia, Fulvio; Introna, Francesco

    2017-04-01

    The identification of bodies through the examination of skeletal remains holds a prominent place in the field of forensic investigations. Technological advancements in 3D facial acquisition techniques have led to the proposal of a new body identification technique that involves a combination of craniofacial superimposition and photogrammetry. The aim of this study was to test the method by superimposing various computerized 3D images of skulls onto various photographs of missing people taken while they were still alive in cases when there was a suspicion that the skulls in question belonged to them. The technique is divided into four phases: preparatory phase, 3d acquisition phase, superimposition phase, and metric image analysis 3d. The actual superimposition of the images was carried out in the fourth step. and was done so by comparing the skull images with the selected photos. Using a specific software, the two images (i.e. the 3D avatar and the photo of the missing person) were superimposed. Cross-comparisons of 5 skulls discovered in a mass grave, and of 2 skulls retrieved in the crawlspace of a house were performed. The morphologyc phase reveals a full overlap between skulls and photos of disappeared persons. Metric phase reveals that correlation coefficients of this values, higher than 0.998-0,997 allow to confirm identification hypothesis.

  3. Case study: The Avengers 3D: cinematic techniques and digitally created 3D

    NASA Astrophysics Data System (ADS)

    Clark, Graham D.

    2013-03-01

    Marvel's THE AVENGERS was the third film Stereo D collaborated on with Marvel; it was a summation of our artistic development of what Digitally Created 3D and Stereo D's artists and toolsets affords Marvel's filmmakers; the ability to shape stereographic space to support the film and story, in a way that balances human perception and live photography. We took our artistic lead from the cinematic intentions of Marvel, the Director Joss Whedon, and Director of Photography Seamus McGarvey. In the digital creation of a 3D film from a 2D image capture, recommendations to the filmmakers cinematic techniques are offered by Stereo D at each step from pre-production onwards, through set, into post. As the footage arrives at our facility we respond in depth to the cinematic qualities of the imagery in context of the edit and story, with the guidance of the Directors and Studio, creating stereoscopic imagery. Our involvement in The Avengers was early in production, after reading the script we had the opportunity and honor to meet and work with the Director Joss Whedon, and DP Seamus McGarvey on set, and into post. We presented what is obvious to such great filmmakers in the ways of cinematic techniques as they related to the standard depth cues and story points we would use to evaluate depth for their film. Our hope was any cinematic habits that supported better 3D would be emphasized. In searching for a 3D statement for the studio and filmmakers we arrived at a stereographic style that allowed for comfort and maximum visual engagement to the viewer.

  4. Enigmatic structures within salt walls of the Santos Basin-Part 1: Geometry and kinematics from 3D seismic reflection and well data

    NASA Astrophysics Data System (ADS)

    Jackson, Christopher A.-L.; Jackson, Martin P. A.; Hudec, Michael R.; Rodriguez, Clara R.

    2015-06-01

    Understanding intrasalt structure may elucidate the fundamental kinematics and, ultimately, the mechanics of diapir growth. However, there have been relatively few studies of the internal structure of salt diapirs outside the mining industry because their cores are only partly exposed in the field and poorly imaged on seismic reflection data. This study uses 3D seismic reflection and borehole data from the São Paulo Plateau, Santos Basin, offshore Brazil to document the variability in intrasalt structural style in natural salt diapirs. We document a range of intrasalt structures that record: (i) initial diapir rise; (ii) rise of lower mobile halite through an arched and thinned roof of denser, layered evaporites, and emplacement of an intrasalt sheet or canopy; (iii) formation of synclinal flaps kinematically linked to emplacement of the intrasalt allochthonous bodies; and (iv) diapir squeezing. Most salt walls contain simple internal anticlines. Only a few salt walls contain allochthonous bodies and breakout-related flaps. The latter occur in an area having a density inversion within the autochthonous salt layer, such that upper, anhydrite-rich, layered evaporites are denser than lower, more halite-rich evaporites. We thus interpret that most diapirs rose through simple fold amplification of internal salt stratigraphy but that locally, where a density inversion existed in the autochthonous salt, Rayleigh-Taylor overturn within the growing diapir resulted in the ascent of less dense evaporites into the diapir crest by breaching of the internal anticline. This resulted in the formation of steep salt-ascension zones or feeders and the emplacement of high-level intrasalt allocthonous sheets underlain by breakout-related flaps. Although regional shortening undoubtedly occurred on the São Paulo Plateau during the Late Cretaceous, we suggest this was only partly responsible for the complex intrasalt deformation. We suggest that, although based on the Santos Basin, our

  5. Studies of the 3D surface roughness height

    SciTech Connect

    Avisane, Anita; Rudzitis, Janis; Kumermanis, Maris

    2013-12-16

    Nowadays nano-coatings occupy more and more significant place in technology. Innovative, functional coatings acquire new aspects from the point of view of modern technologies, considering the aggregate of physical properties that can be achieved manipulating in the production process with the properties of coatings’ surfaces on micro- and nano-level. Nano-coatings are applied on machine parts, friction surfaces, contacting parts, corrosion surfaces, transparent conducting films (TCF), etc. The equipment available at present for the production of transparent conducting oxide (TCO) coatings with highest quality is based on expensive indium tin oxide (ITO) material; therefore cheaper alternatives are being searched for. One such offered alternative is zink oxide (ZnO) nano-coatings. Evaluating the TCF physical and mechanical properties and in view of the new ISO standard (EN ISO 25178) on the introduction of surface texture (3D surface roughness) in the engineering calculations, it is necessary to examine the height of 3D surface roughness, which is one of the most significant roughness parameters. The given paper studies the average values of 3D surface roughness height and the most often applied distribution laws are as follows: the normal distribution and Rayleigh distribution. The 3D surface is simulated by a normal random field.

  6. Numerical study on 3D composite morphing actuators

    NASA Astrophysics Data System (ADS)

    Oishi, Kazuma; Saito, Makoto; Anandan, Nishita; Kadooka, Kevin; Taya, Minoru

    2015-04-01

    There are a number of actuators using the deformation of electroactive polymer (EAP), where fewer papers seem to have focused on the performance of 3D morphing actuators based on the analytical approach, due mainly to their complexity. The present paper introduces a numerical analysis approach on the large scale deformation and motion of a 3D half dome shaped actuator composed of thin soft membrane (passive material) and EAP strip actuators (EAP active coupon with electrodes on both surfaces), where the locations of the active EAP strips is a key parameter. Simulia/Abaqus Static and Implicit analysis code, whose main feature is the high precision contact analysis capability among structures, are used focusing on the whole process of the membrane to touch and wrap around the object. The unidirectional properties of the EAP coupon actuator are used as input data set for the material properties for the simulation and the verification of our numerical model, where the verification is made as compared to the existing 2D solution. The numerical results can demonstrate the whole deformation process of the membrane to wrap around not only smooth shaped objects like a sphere or an egg, but also irregularly shaped objects. A parametric study reveals the proper placement of the EAP coupon actuators, with the modification of the dome shape to induce the relevant large scale deformation. The numerical simulation for the 3D soft actuators shown in this paper could be applied to a wider range of soft 3D morphing actuators.

  7. Construction of semi-dynamic model of subduction zone with given plate kinematics in 3D sphere

    NASA Astrophysics Data System (ADS)

    Morishige, M.; Honda, S.; Tackley, P. J.

    2010-09-01

    We present a semi-dynamic subduction zone model in a three-dimensional spherical shell. In this model, velocity is imposed on the top surface and in a small three-dimensional region around the shallow plate boundary while below this region, the slab is able to subduct under its own weight. Surface plate velocities are given by Euler's theorem of rigid plate rotation on a sphere. The velocity imposed in the region around the plate boundary is determined so that mass conservation inside the region is satisfied. A kinematic trench migration can be easily incorporated in this model. As an application of this model, mantle flow around slab edges is considered, and we find that the effect of Earth curvature is small by comparing our model with a similar one in a rectangular box, at least for the parameters used in this study. As a second application of the model, mantle flow around a plate junction is studied, and we find the existence of mantle return flow perpendicular to the plate boundary. Since this model can naturally incorporate the spherical geometry and plate movement on the sphere, it is useful for studying a specific subduction zone where the plate kinematics is well constrained.

  8. 3D Regression Heat Map Analysis of Population Study Data.

    PubMed

    Klemm, Paul; Lawonn, Kai; Glaßer, Sylvia; Niemann, Uli; Hegenscheid, Katrin; Völzke, Henry; Preim, Bernhard

    2016-01-01

    Epidemiological studies comprise heterogeneous data about a subject group to define disease-specific risk factors. These data contain information (features) about a subject's lifestyle, medical status as well as medical image data. Statistical regression analysis is used to evaluate these features and to identify feature combinations indicating a disease (the target feature). We propose an analysis approach of epidemiological data sets by incorporating all features in an exhaustive regression-based analysis. This approach combines all independent features w.r.t. a target feature. It provides a visualization that reveals insights into the data by highlighting relationships. The 3D Regression Heat Map, a novel 3D visual encoding, acts as an overview of the whole data set. It shows all combinations of two to three independent features with a specific target disease. Slicing through the 3D Regression Heat Map allows for the detailed analysis of the underlying relationships. Expert knowledge about disease-specific hypotheses can be included into the analysis by adjusting the regression model formulas. Furthermore, the influences of features can be assessed using a difference view comparing different calculation results. We applied our 3D Regression Heat Map method to a hepatic steatosis data set to reproduce results from a data mining-driven analysis. A qualitative analysis was conducted on a breast density data set. We were able to derive new hypotheses about relations between breast density and breast lesions with breast cancer. With the 3D Regression Heat Map, we present a visual overview of epidemiological data that allows for the first time an interactive regression-based analysis of large feature sets with respect to a disease.

  9. New registration algorithm for determining 3D knee kinematics using CT and single-plane fluoroscopy with improved out-of-plane translation accuracy.

    PubMed

    Scarvell, Jennifer M; Pickering, Mark R; Smith, Paul N

    2010-03-01

    To understand the kinematic effects of surgery, arthroplasty or conservative treatments, a noninvasive system to capture accurate 3D imaging of functional activities in prospective, controlled studies is required. To provide such a technique, a new algorithm was developed to register 3D CT data of normal bones to the same bones in a 2D fluoroscopy frame. The algorithm produces a digitally reconstructed radiograph (DRR) from the CT data and then filters this to produce an edge-enhanced image. The resulting image is then registered with an edge-enhanced version of the fluoroscopy frame using a new similarity measure called Cross-Correlation Residual Entropy (CCRE). The system was evaluated by implanting tantalum beads into three cadaveric knees to act as fiducial markers. The knees were flexed between 0 degrees and 70 degrees , and single-plane fluoroscopy data of the knees were acquired. CT data of the femur and tibia were then individually registered to the fluoroscopy images. No significant measurement bias was observed, and the standard deviation of the error in bead positions was 0.38 mm for in-plane translation and 0.42 degrees for rotation. To determine the accuracy of the registration algorithm for out-of-plane translations, fluoroscopy frames were scaled in size by fixed increments; the average standard deviation of the errors for out-of-plane translation was 0.65 mm. The ability to obtain such accurate 3D motion data from a noninvasive technique will enable prospective, longitudinal, and controlled studies of reconstruction surgery, and conservative management of joint pathologies.

  10. Gait pattern in myotonic dystrophy (Steinert disease): a kinematic, kinetic and EMG evaluation using 3D gait analysis.

    PubMed

    Galli, Manuela; Cimolin, Veronica; Crugnola, Veronica; Priano, Lorenzo; Menegoni, Francesco; Trotti, Claudio; Milano, Eva; Mauro, Alessandro

    2012-03-15

    We investigated the gait pattern of 10 patients with myotonic dystrophy (Steinert disease; 4 females, 6 males; age: 41.5+7.6 years), compared to 20 healthy controls, through manual muscle test and gait analysis, in terms of kinematic, kinetic and EMG data. In most of patients (80%) distal muscle groups were weaker than proximal ones. Weakness at lower limbs was in general moderate to severe and MRC values evidenced a significant correlation between tibialis anterior and gastrocnemius medialis (R=0.91). An overall observation of gait pattern in patients when compared to controls showed that most spatio-temporal parameters (velocity, step length and cadence) were significantly different. As concerns kinematics, patients' pelvic tilt was globally in a higher position than control group, with reduced hip extension ability in stance phase and limited range of motion; 60% of the limbs revealed knee hyperextension during midstance and ankle joints showed a quite physiological position at initial contact and higher dorsiflexion during stance phase if compared to healthy individuals. Kinetic plots evidenced higher hip power during loading response and lower ankle power generation in terminal stance. The main EMG abnormalities were seen in tibialis anterior and gastrocnemius medialis muscles. In this study gait analysis gives objective and quantitative information about the gait pattern and the deviations due to the muscular situation of these patients; these results are important from a clinical point of view and suggest that rehabilitation programs for them should take these findings into account.

  11. Improving stall design: use of 3-D kinematics to measure space use by dairy cows when lying down.

    PubMed

    Ceballos, A; Sanderson, D; Rushen, J; Weary, D M

    2004-07-01

    Uncomfortable stalls reduce the time cows spend resting and are a risk factor for lameness. Although recommendations for stall dimensions are available, little research supports these recommendations. In this study, kinematic techniques were used to provide the first accurate measures of space used by Holstein dairy cows during lying-down movements in an open space and in a free stall. Cows (n=5, mean parity 3.2 +/- 1.0, body weight=607 +/- 21 kg) used up to 300 cm of longitudinal space when lying down, more than is typically provided by current industry recommendations for stall length. Cows used up to 109 cm of lateral space (180% of hip width), an estimate that is within current recommendations for stall width. During the lying-down movement, maximal lateral displacements at the hip occurred in two vertical zones: one between 95 and 135 cm, and the second less than 50 cm above the lying surface. Maximal longitudinal displacements of the nose were clustered 10 to 30 cm above the surface. These heights should be taken into account when designing and positioning stall partitions. Maximum instantaneous velocity of body markers approached 220 cm/s, indicating that cows can contact inappropriately placed stall partitions and the lying surface with considerable force. Kinematic techniques are promising ways of assessing spatial requirements of cattle to improve stall design. Further work is required to assess a wider range of cow sizes and stall configurations.

  12. Geometry and kinematics of accretionary wedge faults inherited from the structure and rheology of the incoming sedimentary section; insights from 3D seismic reflection data

    NASA Astrophysics Data System (ADS)

    Bell, Rebecca; Orme, Haydn; Lenette, Kathryn; Jackson, Christopher; Fitch, Peter; Phillips, Thomas; Moore, Gregory

    2017-04-01

    Intra-wedge thrust faults represent important conduits for fluid flow in accretionary prisms, modulating pore fluid pressure, effective stress and, ultimately, the seismic hazard potential of convergent plate boundaries. Despite its importance, we know surprisingly little regarding the 3D geometry and kinematics of thrust networks in accretionary prisms, largely due to a lack of 3D seismic reflection data providing high-resolution, 3D images. To address this we here present observations from two subduction zones, the Nankai and Lesser Antilles margins, where 3D seismic and borehole data allow us to constrain the geometry and kinematics of intra-wedge fault networks and to thus shed light on the mechanisms responsible for their structural style variability. At the Muroto transect, Nankai margin we find that the style of protothrust zone deformation varies markedly along-strike over distances of only a few km. Using structural restoration and quantitative fault analysis, we reveal that in the northern part of the study area deformation occurred by buckle folding followed by faulting. Further south, intra-wedge faults nucleate above the décollement and propagate radially with no folding, resulting in variable connectivity between faults and the décollement. The seismic facies character of sediments immediately above the décollement varies along strike, with borehole data revealing that, in the north, where buckle folding dominates un-cemented Lower Shikoku Basin sediments overlie the décollement. In contrast, further south, Opal CT-cemented, and thus rigid Upper Shikoku Basin sediments overlie the décollement. We suggest these along-strike variations in diagenesis and thus rheology control the observed structural style variability. Near Barbados, at the Lesser Antilles margin, rough subducting plate relief is blanketed by up to 700 m of sediment. 3D seismic data reveal that basement relief is defined by linear normal fault blocks and volcanic ridges, and sub

  13. THE KMOS{sup 3D} SURVEY: DESIGN, FIRST RESULTS, AND THE EVOLUTION OF GALAXY KINEMATICS FROM 0.7 ≤ z ≤ 2.7

    SciTech Connect

    Wisnioski, E.; Förster Schreiber, N. M.; Wuyts, S.; Wuyts, E.; Bandara, K.; Genzel, R.; Bender, R.; Davies, R.; Lang, P.; Mendel, J. T.; Beifiori, A.; Chan, J.; Fabricius, M.; Fudamoto, Y.; Kulkarni, S.; Kurk, J.; Lutz, D.; Wilman, D.; Fossati, M.; Brammer, G.; and others

    2015-02-01

    We present the KMOS{sup 3D} survey, a new integral field survey of over 600 galaxies at 0.7 < z < 2.7 using KMOS at the Very Large Telescope. The KMOS{sup 3D} survey utilizes synergies with multi-wavelength ground- and space-based surveys to trace the evolution of spatially resolved kinematics and star formation from a homogeneous sample over 5 Gyr of cosmic history. Targets, drawn from a mass-selected parent sample from the 3D-HST survey, cover the star formation-stellar mass (M {sub *}) and rest-frame (U – V) – M {sub *} planes uniformly. We describe the selection of targets, the observations, and the data reduction. In the first-year of data we detect Hα emission in 191 M {sub *} = 3 × 10{sup 9}-7 × 10{sup 11} M {sub ☉} galaxies at z = 0.7-1.1 and z = 1.9-2.7. In the current sample 83% of the resolved galaxies are rotation dominated, determined from a continuous velocity gradient and v {sub rot}/σ{sub 0} > 1, implying that the star-forming ''main sequence'' is primarily composed of rotating galaxies at both redshift regimes. When considering additional stricter criteria, the Hα kinematic maps indicate that at least ∼70% of the resolved galaxies are disk-like systems. Our high-quality KMOS data confirm the elevated velocity dispersions reported in previous integral field spectroscopy studies at z ≳ 0.7. For rotation-dominated disks, the average intrinsic velocity dispersion decreases by a factor of two from 50 km s{sup –1}at z ∼ 2.3 to 25 km s{sup –1}at z ∼ 0.9. Combined with existing results spanning z ∼ 0-3, we show that disk velocity dispersions follow an evolution that is consistent with the dependence of velocity dispersion on gas fractions predicted by marginally stable disk theory.

  14. The KMOS3D Survey: Design, First Results, and the Evolution of Galaxy Kinematics from 0.7 <= z <= 2.7

    NASA Astrophysics Data System (ADS)

    Wisnioski, E.; Förster Schreiber, N. M.; Wuyts, S.; Wuyts, E.; Bandara, K.; Wilman, D.; Genzel, R.; Bender, R.; Davies, R.; Fossati, M.; Lang, P.; Mendel, J. T.; Beifiori, A.; Brammer, G.; Chan, J.; Fabricius, M.; Fudamoto, Y.; Kulkarni, S.; Kurk, J.; Lutz, D.; Nelson, E. J.; Momcheva, I.; Rosario, D.; Saglia, R.; Seitz, S.; Tacconi, L. J.; van Dokkum, P. G.

    2015-02-01

    We present the KMOS3D survey, a new integral field survey of over 600 galaxies at 0.7 < z < 2.7 using KMOS at the Very Large Telescope. The KMOS3D survey utilizes synergies with multi-wavelength ground- and space-based surveys to trace the evolution of spatially resolved kinematics and star formation from a homogeneous sample over 5 Gyr of cosmic history. Targets, drawn from a mass-selected parent sample from the 3D-HST survey, cover the star formation-stellar mass (M *) and rest-frame (U - V) - M * planes uniformly. We describe the selection of targets, the observations, and the data reduction. In the first-year of data we detect Hα emission in 191 M * = 3 × 109-7 × 1011 M ⊙ galaxies at z = 0.7-1.1 and z = 1.9-2.7. In the current sample 83% of the resolved galaxies are rotation dominated, determined from a continuous velocity gradient and v rot/σ0 > 1, implying that the star-forming "main sequence" is primarily composed of rotating galaxies at both redshift regimes. When considering additional stricter criteria, the Hα kinematic maps indicate that at least ~70% of the resolved galaxies are disk-like systems. Our high-quality KMOS data confirm the elevated velocity dispersions reported in previous integral field spectroscopy studies at z >~ 0.7. For rotation-dominated disks, the average intrinsic velocity dispersion decreases by a factor of two from 50 km s-1at z ~ 2.3 to 25 km s-1at z ~ 0.9. Combined with existing results spanning z ~ 0-3, we show that disk velocity dispersions follow an evolution that is consistent with the dependence of velocity dispersion on gas fractions predicted by marginally stable disk theory. Based on observations obtained at the Very Large Telescope (VLT) of the European Southern Observatory (ESO), Paranal, Chile (ESO program IDS 092A-0091, 093.A-0079).

  15. Method and simulation to study 3D crosstalk perception

    NASA Astrophysics Data System (ADS)

    Khaustova, Dar'ya; Blondé, Laurent; Huynh-Thu, Quan; Vienne, Cyril; Doyen, Didier

    2012-03-01

    To various degrees, all modern 3DTV displays suffer from crosstalk, which can lead to a decrease of both visual quality and visual comfort, and also affect perception of depth. In the absence of a perfect 3D display technology, crosstalk has to be taken into account when studying perception of 3D stereoscopic content. In order to improve 3D presentation systems and understand how to efficiently eliminate crosstalk, it is necessary to understand its impact on human perception. In this paper, we present a practical method to study the perception of crosstalk. The approach consists of four steps: (1) physical measurements of a 3DTV, (2) building of a crosstalk surface based on those measurements and representing specifically the behavior of that 3TV, (3) manipulation of the crosstalk function and application on reference images to produce test images degraded by crosstalk in various ways, and (4) psychophysical tests. Our approach allows both a realistic representation of the behavior of a 3DTV and the easy manipulation of its resulting crosstalk in order to conduct psycho-visual experiments. Our approach can be used in all studies requiring the understanding of how crosstalk affects perception of stereoscopic content and how it can be corrected efficiently.

  16. Accurate and reproducible reconstruction of coronary arteries and endothelial shear stress calculation using 3D OCT: comparative study to 3D IVUS and 3D QCA.

    PubMed

    Toutouzas, Konstantinos; Chatzizisis, Yiannis S; Riga, Maria; Giannopoulos, Andreas; Antoniadis, Antonios P; Tu, Shengxian; Fujino, Yusuke; Mitsouras, Dimitrios; Doulaverakis, Charalampos; Tsampoulatidis, Ioannis; Koutkias, Vassilis G; Bouki, Konstantina; Li, Yingguang; Chouvarda, Ioanna; Cheimariotis, Grigorios; Maglaveras, Nicos; Kompatsiaris, Ioannis; Nakamura, Sunao; Reiber, Johan H C; Rybicki, Frank; Karvounis, Haralambos; Stefanadis, Christodoulos; Tousoulis, Dimitris; Giannoglou, George D

    2015-06-01

    Geometrically-correct 3D OCT is a new imaging modality with the potential to investigate the association of local hemodynamic microenvironment with OCT-derived high-risk features. We aimed to describe the methodology of 3D OCT and investigate the accuracy, inter- and intra-observer agreement of 3D OCT in reconstructing coronary arteries and calculating ESS, using 3D IVUS and 3D QCA as references. 35 coronary artery segments derived from 30 patients were reconstructed in 3D space using 3D OCT. 3D OCT was validated against 3D IVUS and 3D QCA. The agreement in artery reconstruction among 3D OCT, 3D IVUS and 3D QCA was assessed in 3-mm-long subsegments using lumen morphometry and ESS parameters. The inter- and intra-observer agreement of 3D OCT, 3D IVUS and 3D QCA were assessed in a representative sample of 61 subsegments (n = 5 arteries). The data processing times for each reconstruction methodology were also calculated. There was a very high agreement between 3D OCT vs. 3D IVUS and 3D OCT vs. 3D QCA in terms of total reconstructed artery length and volume, as well as in terms of segmental morphometric and ESS metrics with mean differences close to zero and narrow limits of agreement (Bland-Altman analysis). 3D OCT exhibited excellent inter- and intra-observer agreement. The analysis time with 3D OCT was significantly lower compared to 3D IVUS. Geometrically-correct 3D OCT is a feasible, accurate and reproducible 3D reconstruction technique that can perform reliable ESS calculations in coronary arteries. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

  17. On the use of a Euclidean norm function for the estimation of local dynamic stability from 3D kinematics using time-delayed Lyapunov analyses.

    PubMed

    Beaudette, Shawn M; Howarth, Samuel J; Graham, Ryan B; Brown, Stephen H M

    2016-10-01

    Several different state-space reconstruction methods have been employed to assess the local dynamic stability (LDS) of a 3D kinematic system. One common method is to use a Euclidean norm (N) transformation of three orthogonal x, y, and z time-series' followed by the calculation of the maximum finite-time Lyapunov exponent (λmax) from the resultant N waveform (using a time-delayed state space reconstruction technique). By essentially acting as a weighted average, N has been suggested to account for simultaneous expansion and contraction along separate degrees of freedom within a 3D system (e.g. the coupling of dynamic movements between orthogonal planes). However, when estimating LDS using N, non-linear transformations inherent within the calculation of N should be accounted for. Results demonstrate that the use of N on 3D time-series data with arbitrary magnitudes of relative bias and zero-crossings cause the introduction of error in estimates of λmax obtained through N. To develop a standard for the analysis of 3D dynamic kinematic waveforms, we suggest that all dimensions of a 3D signal be independently shifted to avoid the incidence of zero-crossings prior to the calculation of N and subsequent estimation of LDS through the use of λmax.

  18. Studying 3D Spherical Shell Convection using ASPECT

    NASA Astrophysics Data System (ADS)

    Euen, G.; King, S. D.; Liu, S.

    2016-12-01

    Modeling convection in spherical geometries is crucial to gain an understanding of planet-scale mantle processes. However, modeling 3D spherical shells is computationally challenging. Few studies have been done using full 3D spherical shells. Here I present test cases for modeling 3D spherical shells using ASPECT. These cases are based on previous work using CitcomS done by Zhong et al., 2008. The cases were run on the BlueRidge and NewRiver clusters at ARC at Virginia Tech. Cases were run using varying numbers of processors and 2-5 global mesh refinements. Each added refinement increases the number of cells by a factor of 8. Two global refinements corresponds to 6,144 cells, three refinements have 49,152 cells, four refinements have 393,216 cells, and five refinements have 3,145,728 cells. To make these results comparable to Zhong et al., 2008 all adaptive mesh refinement was turned off. Cases ran very sporadically at first, with three major error types emerging. However, after ASPECT version 1.5.0 was released and the latest version was cloned from Github and built July 10 th -15 th , 2016, the cases ran with no errors. It should be noted that 2D spherical cases ran with no errors throughout the testing. ASPECT results matched well with the Zhong et al., 2008 results. We will present results varying the refinement and number of processors to demonstrate scaling and efficiency of the code for spherical problems.

  19. From nearby to distant galaxies: kinematical and dynamical studies

    NASA Astrophysics Data System (ADS)

    Epinat, Benoit

    2009-09-01

    Kinematical studies of low and high redshift galaxies enables to probe galaxy formation and evolution scenarios. Integral field spectroscopy is a powerful tool to study with accuracy nearby galaxies kinematics. Recent observations also gives a new 2D vision of high redshift galaxies kinematics. This work mostly relies on the kinematical sample of galaxies GHASP. This control sample, composed of 203 local spiral and irregular galaxies in low density environments observed with Fabry-Perot techniques in the Ha line (6563 A), is by now the largest sample of Fabry-Perot data. After a revue on Fabry-Perot interferometry and a presentation of new data reduction procedures, my implications on both 3D-NTT Fabry-Perot instrument and the wide field spectrograph project (WFSpec) for galaxy evolution study with the european ELT are developed. The second section is dedicated to GHASP data. This sample have been fully reduced and analysed using new methods. The kinematical analysis of 2D kinematical maps has been undertaken with the study of the dark matter distribution, the rotation curves shape, bar signatures and the ionized gas velocity dispersion. In a third section, this local reference sample is used as a zero point for high redshift galaxies kinematical studies. The GHASP sample is projected at high redshift (z=1.7) in order to disentangle evolution effects from distance biases in high redshift galaxies kinematical data observed with SINFONI, OSIRIS and GIRAFFE. The kinematical analysis of new SINFONI high redshift observations is also presented and high redshift data found in the literature are compared with GHASP projected sample, suggesting some evolution of the galaxy dynamical support within the ages.

  20. Extracting a high-quality data space for stereo-tomography based on a 3D structure tensor algorithm and kinematic de-migration

    NASA Astrophysics Data System (ADS)

    Xiong, Kai; Yang, Kai; Wang, Yu-Xiang

    2017-08-01

    To extract a high-quality data space (the so-called kinematic invariants) is a key factor to a successful implementation of stereo-tomography. The structure tensor algorithm demonstrated itself a robust tool to pick the kinematic invariants for stereo-tomography. However, if there are lots of diffractions and other noises in the data, it could be risky to extract the data space from the data domain. Meanwhile, for any reflector, we try to pick all the relevant primary reflections as much as possible within a wide offset range. To achieve this, in this paper, we design a scheme to extract a high-quality data space for stereo-tomography based on 3D structure tensor and kinematic de-migration. Firstly, we apply an automatic, dense volumetric picking for residual move-out (RMO) and the structural dip in the depth-migrated domain with an advanced 3D structure tensor algorithm. Then, a set of key horizons are picked manually in a few selected depth-migrated common offset gathers. Finally, all the picked horizons are extrapolated along the offset axis based on the RMO information picked in advance. Thus, the initial high-density points picked in the depth-migrated volume are greatly refined. After this processing, a final and refined data space for stereo-tomography is extracted through a kinematic de-migration. We demonstrate the correctness and the robustness of the presented scheme with synthetic and real data examples.

  1. A 3D optical study of Low Surface Brightness galaxies

    NASA Astrophysics Data System (ADS)

    Chemin, L.; Amram, P.; Carignan, C.; Balkowski, C.; van Driel, W.; Cayatte, V.; Hernandez, O.

    2004-12-01

    Integral field spectroscopy observations of the ionized gas in Low Surface Brightness Galaxies (LSBs) are presented. The goal of this study is to map their kinematics at high angular resolution and to study their dark matter (DM) distribution. For that purpose, we have used Fabry-Perot observations obtained at the CFH and ESO 3.6m telescopes. The new contribution of highly resolved velocity fields is crucial to study the role of non-circular motions on the dynamics of LSBs, and particularly on the shape of their DM halo profile (cusp- or core- dominated halo). Here are shown some examples of galaxies in which such motions exist in their central parts and prevent from determining the accurate shape of their DM halo.

  2. Surface topography study of prepared 3D printed moulds via 3D printer for silicone elastomer based nasal prosthesis

    NASA Astrophysics Data System (ADS)

    Abdullah, Abdul Manaf; Din, Tengku Noor Daimah Tengku; Mohamad, Dasmawati; Rahim, Tuan Noraihan Azila Tuan; Akil, Hazizan Md; Rajion, Zainul Ahmad

    2016-12-01

    Conventional prosthesis fabrication is highly depends on the hand creativity of laboratory technologist. The development in 3D printing technology offers a great help in fabricating affordable and fast yet esthetically acceptable prostheses. This study was conducted to discover the potential of 3D printed moulds for indirect silicone elastomer based nasal prosthesis fabrication. Moulds were designed using computer aided design (CAD) software (Solidworks, USA) and converted into the standard tessellation language (STL) file. Three moulds with layer thickness of 0.1, 0.2 and 0.3mm were printed utilizing polymer filament based 3D printer (Makerbot Replicator 2X, Makerbot, USA). Another one mould was printed utilizing liquid resin based 3D printer (Objet 30 Scholar, Stratasys, USA) as control. The printed moulds were then used to fabricate maxillofacial silicone specimens (n=10)/mould. Surface profilometer (Surfcom Flex, Accretech, Japan), digital microscope (KH77000, Hirox, USA) and scanning electron microscope (Quanta FEG 450, Fei, USA) were used to measure the surface roughness as well as the topological properties of fabricated silicone. Statistical analysis of One-Way ANOVA was employed to compare the surface roughness of the fabricated silicone elastomer. Result obtained demonstrated significant differences in surface roughness of the fabricated silicone (p<0.01). Further post hoc analysis also revealed significant differences in silicone fabricated using different 3D printed moulds (p<0.01). A 3D printed mould was successfully prepared and characterized. With surface topography that could be enhanced, inexpensive and rapid mould fabrication techniques, polymer filament based 3D printer is potential for indirect silicone elastomer based nasal prosthesis fabrication.

  3. In vitro quantification of the performance of model-based mono-planar and bi-planar fluoroscopy for 3D joint kinematics estimation.

    PubMed

    Tersi, Luca; Barré, Arnaud; Fantozzi, Silvia; Stagni, Rita

    2013-03-01

    Model-based mono-planar and bi-planar 3D fluoroscopy methods can quantify intact joints kinematics with performance/cost trade-off. The aim of this study was to compare the performances of mono- and bi-planar setups to a marker-based gold-standard, during dynamic phantom knee acquisitions. Absolute pose errors for in-plane parameters were lower than 0.6 mm or 0.6° for both mono- and bi-planar setups. Mono-planar setups resulted critical in quantifying the out-of-plane translation (error < 6.5 mm), and bi-planar in quantifying the rotation along bone longitudinal axis (error < 1.3°). These errors propagated to joint angles and translations differently depending on the alignment of the anatomical axes and the fluoroscopic reference frames. Internal-external rotation was the least accurate angle both with mono- (error < 4.4°) and bi-planar (error < 1.7°) setups, due to bone longitudinal symmetries. Results highlighted that accuracy for mono-planar in-plane pose parameters is comparable to bi-planar, but with halved computational costs, halved segmentation time and halved ionizing radiation dose. Bi-planar analysis better compensated for the out-of-plane uncertainty that is differently propagated to relative kinematics depending on the setup. To take its full benefits, the motion task to be investigated should be designed to maintain the joint inside the visible volume introducing constraints with respect to mono-planar analysis.

  4. 3D ultrasound computer tomography: update from a clinical study

    NASA Astrophysics Data System (ADS)

    Hopp, T.; Zapf, M.; Kretzek, E.; Henrich, J.; Tukalo, A.; Gemmeke, H.; Kaiser, C.; Knaudt, J.; Ruiter, N. V.

    2016-04-01

    Ultrasound Computer Tomography (USCT) is a promising new imaging method for breast cancer diagnosis. We developed a 3D USCT system and tested it in a pilot study with encouraging results: 3D USCT was able to depict two carcinomas, which were present in contrast enhanced MRI volumes serving as ground truth. To overcome severe differences in the breast shape, an image registration was applied. We analyzed the correlation between average sound speed in the breast and the breast density estimated from segmented MRIs and found a positive correlation with R=0.70. Based on the results of the pilot study we now carry out a successive clinical study with 200 patients. For this we integrated our reconstruction methods and image post-processing into a comprehensive workflow. It includes a dedicated DICOM viewer for interactive assessment of fused USCT images. A new preview mode now allows intuitive and faster patient positioning. We updated the USCT system to decrease the data acquisition time by approximately factor two and to increase the penetration depth of the breast into the USCT aperture by 1 cm. Furthermore the compute-intensive reflectivity reconstruction was considerably accelerated, now allowing a sub-millimeter volume reconstruction in approximately 16 minutes. The updates made it possible to successfully image first patients in our ongoing clinical study.

  5. Nonlinear 3D MHD verification study: SpeCyl and PIXIE3D codes for RFP and Tokamak plasmas

    NASA Astrophysics Data System (ADS)

    Bonfiglio, D.; Cappello, S.; Chacon, L.

    2010-11-01

    A strong emphasis is presently placed in the fusion community on reaching predictive capability of computational models. An essential requirement of such endeavor is the process of assessing the mathematical correctness of computational tools, termed verification [1]. We present here a successful nonlinear cross-benchmark verification study between the 3D nonlinear MHD codes SpeCyl [2] and PIXIE3D [3]. Excellent quantitative agreement is obtained in both 2D and 3D nonlinear visco-resistive dynamics for reversed-field pinch (RFP) and tokamak configurations [4]. RFP dynamics, in particular, lends itself as an ideal non trivial test-bed for 3D nonlinear verification. Perspectives for future application of the fully-implicit parallel code PIXIE3D to RFP physics, in particular to address open issues on RFP helical self-organization, will be provided. [4pt] [1] M. Greenwald, Phys. Plasmas 17, 058101 (2010) [0pt] [2] S. Cappello and D. Biskamp, Nucl. Fusion 36, 571 (1996) [0pt] [3] L. Chac'on, Phys. Plasmas 15, 056103 (2008) [0pt] [4] D. Bonfiglio, L. Chac'on and S. Cappello, Phys. Plasmas 17 (2010)

  6. Controlled architectural and chemotactic studies of 3D cell migration.

    PubMed

    Tayalia, Prakriti; Mazur, Eric; Mooney, David J

    2011-04-01

    Chemotaxis plays a critical role in tissue development and wound repair, and is widely studied using ex vivo model systems in applications such as immunotherapy. However, typical chemotactic models employ 2D systems that are less physiologically relevant or use end-point assays, that reveal little about the stepwise dynamics of the migration process. To overcome these limitations, we developed a new model system using microfabrication techniques, sustained drug delivery approaches, and theoretical modeling of chemotactic agent diffusion. This model system allows us to study the effects of 3D architecture and chemotactic agent gradient on immune cell migration in real time. We find that dendritic cell migration is characterized by a strong interplay between matrix architecture and chemotactic gradients, and migration is also influenced dramatically by the cell activation state. Our results indicate that Lipopolysaccharide-activated dendritic cells studied in a traditional transwell system actually exhibit anomalous migration behavior. Such a 3D ex vivo system lends itself for analyzing cell migratory behavior in response to single or multiple competitive cues and could prove useful in vaccine development.

  7. Permeability studies on 3D Ni foam/graphene composites

    NASA Astrophysics Data System (ADS)

    Yang, Zhuxian; Chen, Hongmei; Wang, Nannan; Xia, Yongde; Zhu, Yanqiu

    2017-09-01

    This study investigates the permeability of new 3D Ni foam/graphene composites (Ni foam covered with graphene) using compressed air, Ar and N2 as the probe gases. The results show that the introduction of graphene on the surface of Ni foam via in situ chemical vapour deposition is not detrimental to the permeability of the composites; on the contrary, in some cases it improves permeability. A modified Ergun-type correlation has been proposed, which represents very well the permeability of the Ni foam/graphene composites, especially at flow rates higher than 0.3 m s-1. Further studies show that graphene also helps to improve the thermal conductivity of the composite. These results suggest that the graphene involvement will make the Ni foam/graphene composite a good candidate for potential applications such as filters or heat exchangers suitable for working under harsh conditions such as at high temperatures, in corrosive environments, etc.

  8. Evaluation of 3-D graphics software: A case study

    NASA Technical Reports Server (NTRS)

    Lores, M. E.; Chasen, S. H.; Garner, J. M.

    1984-01-01

    An efficient 3-D geometry graphics software package which is suitable for advanced design studies was developed. The advanced design system is called GRADE--Graphics for Advanced Design. Efficiency and ease of use are gained by sacrificing flexibility in surface representation. The immediate options were either to continue development of GRADE or to acquire a commercially available system which would replace or complement GRADE. Test cases which would reveal the ability of each system to satisfy the requirements were developed. A scoring method which adequately captured the relative capabilities of the three systems was presented. While more complex multi-attribute decision methods could be used, the selected method provides all the needed information without being so complex that it is difficult to understand. If the value factors are modestly perturbed, system Z is a clear winner based on its overall capabilities. System Z is superior in two vital areas: surfacing and ease of interface with application programs.

  9. Improved Surgery Planning Using 3-D Printing: a Case Study.

    PubMed

    Singhal, A J; Shetty, V; Bhagavan, K R; Ragothaman, Ananthan; Shetty, V; Koneru, Ganesh; Agarwala, M

    2016-04-01

    The role of 3-D printing is presented for improved patient-specific surgery planning. Key benefits are time saved and surgery outcome. Two hard-tissue surgery models were 3-D printed, for orthopedic, pelvic surgery, and craniofacial surgery. We discuss software data conversion in computed tomography (CT)/magnetic resonance (MR) medical image for 3-D printing. 3-D printed models save time in surgery planning and help visualize complex pre-operative anatomy. Time saved in surgery planning can be as much as two thirds. In addition to improved surgery accuracy, 3-D printing presents opportunity in materials research. Other hard-tissue and soft-tissue cases in maxillofacial, abdominal, thoracic, cardiac, orthodontics, and neurosurgery are considered. We recommend using 3-D printing as standard protocol for surgery planning and for teaching surgery practices. A quick turnaround time of a 3-D printed surgery model, in improved accuracy in surgery planning, is helpful for the surgery team. It is recommended that these costs be within 20 % of the total surgery budget.

  10. Development of a kinematic 3D carpal model to analyze in vivo soft-tissue interaction across multiple static postures.

    PubMed

    Marai, G; Crisco, Joseph J; Laidlaw, David H

    2009-01-01

    We developed a subject-specific kinematic model to analyze in vivo soft-tissue interaction in the carpus in static, unloaded postures. The bone geometry was extracted from a reference computed tomography volume image. The soft-tissue geometry, including cartilage and ligament tissues, was computationally modeled based on kinematic constraints; the constraints were extracted from multiple computed tomography scans corresponding to different carpal postures. The data collected in vivo was next coupled with numerical simulation in order to analyze the role of soft-tissues in different postures. The resulting model extends the state of biomechanical modeling by incorporating soft-tissue constraints across the carpus range of motion, while successfully using only physiological constraints. The model results suggest that soft-tissue wrapping constraints have substantial impact on carpus stability.

  11. Posture and low back pain during pregnancy - 3D study.

    PubMed

    Glinkowski, Wojciech M; Tomasik, Paweł; Walesiak, Katarzyna; Głuszak, Michał; Krawczak, Karolina; Michoński, Jakub; Czyżewska, Anna; Żukowska, Agnieszka; Sitnik, Robert; Wielgoś, Mirosław

    2016-01-01

    Back pain is a common complaint of pregnant women. The posture, curvatures of the spine and the center of gravity changes are considered as the mechanisms leading to pain. The study aimed to assess spinal curvatures and static postural characteristics with three-dimensional surface topography and search for relationships with the occurrence of back pain complaints among pregnant women. The study was conducted from December 2012 to February 2014. Patients referred from University Clinic of Gynecology and Obstetrics were examined outpatient at the Posture Study Unit of Department of Orthopaedics and Traumatology. Sixty-five women at 4-39 weeks of pregnancy were assessed and surveyed with Oswestry Disability Index; posture was evaluated using surface topography. The study confirmed that difficulties in sitting and standing are significant in the third trimester of the pregnancy. The overall tendency for significant lumbar curvature changes in pregnant women was not confirmed. Major changes in sagittal trunk inclination in relation to the plumb line were not observed in the study group. The issue regarding how the pregnancy causes changes in spinal curvature and posture remains open for further studies. Presented method of 3D surface topography can reveal postural changes, but that requires several exams of each subject and strict follow-up of the series of cases.

  12. Kinematic Analysis of Fold-Thrust-Belt Using Integrated Analogue Sandbox Modeling and 3D Palinspatic Reconstructions in Babar-Selaru Area, Banda Sea Region, Indonesia

    NASA Astrophysics Data System (ADS)

    Sapiie, Benyamin; Hadiana, Meli; Kurniawan, Ade; Daniel, Dicky; Danio, Harya; Fujimoto, Masamichi; Ohara, Michio; Alam Perdana, Lisnanda; Saputra, Afif

    2016-04-01

    Kinematic analysis of Babar-Selaru fold-thrust-belt is challenging and often difficult particularly in conducting seismic interpretation due to complex structural geometries. Resolving such as issue, in this study we proposed to use integrated seismic interpretation, analogue sandbox modeling and 3D palinspatic reconstructions. This paper is presented results of detail kinematic analysis for understanding tectonic evolution as well as mechanism of fold-thrust-belt in relation to their hydrocarbon prospect. Babar-Selaru Area is located within the collisional boundary between Australian continental margin and Banda Arc region of Indonesia. The area is characterized by complex deformation zone of fold-thrust-belt, involving Mesozoic and Tertiary sedimentary sequences of Australian continental margin. The age of deformation is ranging from 8-5 Ma. Seismic interpretations show two styles of faults developed in the area, which are thrust and normal faults system. The last deformation observed in the Babar Selaru area is controlled by south verging imbricated thin-skinned thrust fault system, with the staircase style of fault detachment. Although, both structural styles occurred in separated locations, they are formed not only in the same time but also related in time and space. Total extension is ranging from 1-3 % where average shortening is in the order of 35-38%. Sandbox modeling is an effective way to study and understand the style, pattern and geometry of the deformed sedimentary sequences in the study area. Based on comparison of five settings experiments (mainly different geological boundary condition) with more than 50 different modeling; deformation is particularly controlled by types and thickness of lithology package and detachment geometry. These two parameters were quite sensitive in generating different deformation style and pattern in Babar-Selaru fold-thrust-belt. Therefore, choosing the right combination of stratigraphy model and material setting are

  13. 3D surface flow kinematics derived from airborne UAVSAR interferometric synthetic aperture radar to constrain the physical mechanisms controlling landslide motion

    NASA Astrophysics Data System (ADS)

    Delbridge, B. G.; Burgmann, R.; Fielding, E. J.; Hensley, S.; Schulz, W. H.

    2013-12-01

    This project focuses on improving our understanding of the physical mechanisms controlling landslide motion by studying the landslide-wide kinematics of the Slumgullion landslide in southwestern Colorado using interferometric synthetic aperture radar (InSAR) and GPS. The NASA/JPL UAVSAR airborne repeat-pass SAR interferometry system imaged the Slumgullion landslide from 4 look directions on eight flights in 2011 and 2012. Combining the four look directions allows us to extract the full 3-D velocity field of the surface. Observing the full 3-dimensional flow field allows us to extract the full strain tensor (assuming free surface boundary conditions and incompressible flow) since we have both the spatial resolution to take spatial derivates and full deformation information. COSMO-SkyMed(CSK) high-resolution Spotlight data was also acquired during time intervals overlapping with the UAVSAR one-week pairs, with intervals as short as one day. These observations allow for the quantitative testing of the deformation magnitude and estimated formal errors in the UAVSAR derived deformation field. We also test the agreement of the deformation at 20 GPS monitoring sites concurrently acquired by the USGS. We also utilize the temporal resolution of real-time GPS acquired by the UC Berkeley Active Tectonics Group during a temporary deployment from July 22nd - August 2nd. By combining this data with the kinematic data we hope to elucidate the response of the landslide to environmental changes such as rainfall, snowmelt, and atmospheric pressure, and consequently the mechanisms controlling the dynamics of the landslide system. To constrain the longer temporal dynamics, interferograms made from pairs of CSK images acquired in 2010, 2011, 2012 and 2013 reveal the slide deformation on a longer timescale by allowing us to measure meters of motion and see the average rates over year long intervals using pixel offset tracking of the high-resolution SAR amplitude images. The results of

  14. Elemental concentration distribution in human fingernails - A 3D study

    NASA Astrophysics Data System (ADS)

    Pineda-Vargas, C. A.; Mars, J. A.; Gihwala, D.

    2012-02-01

    The verification of pathologies has normally been based on analysis of blood (serum and plasma), and physiological tissue. Recently, nails and in particular human fingernails have become an important medium for pathological studies, especially those of environmental origin. The analytical technique of PIXE has been used extensively in the analysis of industrial samples and human tissue specimens. The application of the analytical technique to nails has been mainly to bulk samples. In this study we use micro-PIXE and -RBS, as both complementary and supplementary, to determine the elemental concentration distribution of human fingernails of individuals. We report on the 3D quantitative elemental concentration distributions (QECDs) of various elements that include C, N and O as major elements (10-20%), P, S, Cl, K and Ca as minor elements (1-10%) and Fe, Mn, Zn, Ti, Na, Mg, Cu, Ni, Cr, Rb, Br, Sr and Se as trace elements (less than 1%). For PIXE and RBS the specimens were bombarded with a 3 MeV proton beam. To ascertain any correlations in the quantitative elemental concentration distributions, a linear traverse analysis was performed across the width of the nail. Elemental distribution correlations were also obtained.

  15. Precision analysis of a multi-slice ultrasound sensor for non-invasive 3D kinematic analysis of knee joints.

    PubMed

    Masum, Md Abdullah; Lambert, Andrew J; Pickering, Mark R; Scarvell, J M; Smith, P N

    2012-01-01

    Currently the standard clinical practice for measuring the motion of bones in a knee joint with sufficient precision involves implanting tantalum beads into the bones to act as fiducial markers prior to imaging using X-ray equipment. This procedure is invasive in nature and exposure to ionizing radiation imposes a cancer risk and the patient's movements are confined to a narrow field of view. In this paper, an ultrasound based system for non-invasive kinematic evaluation of knee joints is proposed. The results of an initial analysis show that this system can provide the precision required for non-invasive motion analysis while the patient performs normal physical activities.

  16. A comparative study on 3D range data compression methods

    NASA Astrophysics Data System (ADS)

    Bell, Tyler; Zhang, Song

    2016-05-01

    As high-quality 3D range scanners become increasingly adopted, a common issue emerges that is how best to properly store captured 3D data as it inherently contains a large amount of information per each frame. One approach that has proved successful is to convert 3D range data to 2D regular color images that can be further compressed using traditional image compression techniques (e.g., JPEG). In literature, there are three major conversion methods: (1) virtual fringe projection; (2) direct depth encoding; and (3) multiwavelength depth en- coding. This paper compares the effectiveness and limitations of all three major compression methods, especially when the resultant 2D images are stored with low-quality lossy (i.e., JPEG) image formats. Experimental data found that multiwavelength depth encoding outperforms both other methods, especially under various levels of lossy JPEG compression. Principles of each method will be explained, and experimental data will be presented to evaluate each method.

  17. Application of 3D printing technology in aerodynamic study

    NASA Astrophysics Data System (ADS)

    Olasek, K.; Wiklak, P.

    2014-08-01

    3D printing, as an additive process, offers much more than traditional machining techniques in terms of achievable complexity of a model shape. That fact was a motivation to adapt discussed technology as a method for creating objects purposed for aerodynamic testing. The following paper provides an overview of various 3D printing techniques. Four models of a standard NACA0018 aerofoil were manufactured in different materials and methods: MultiJet Modelling (MJM), Selective Laser Sintering (SLS) and Fused Deposition Modeling (FDM). Various parameters of the models have been included in the analysis: surface roughness, strength, details quality, surface imperfections and irregularities as well as thermal properties.

  18. Evolution of large amplitude 3D fold patterns: A FEM study

    NASA Astrophysics Data System (ADS)

    Schmid, D. W.; Dabrowski, M.; Krotkiewski, M.

    2008-12-01

    The numerical study of three-dimensional (3D) fold patterns formation in randomly perturbed layers requires large numbers of degrees of freedom (≥100,000,000). We have developed BILAMIN, an unstructured (geometry fitted) mesh implementation of the finite element method for incompressible Stokes flow that is capable of solving such systems. All repetitive and computationally intensive steps are fully parallelized. One of the main components is the iterative solver. We chose the minimum residual method (MINRES) because it allows operating directly on the indefinite systems resulting from the incompressibility condition. We use BILAMIN in a case study of fold pattern evolution. Folds are ubiquitous in nature, and contain both mechanical and kinematic information that can be deciphered with appropriate tools. Our results show that there is a relationship between fold aspect ratio and in-plane loading conditions. We propose that this finding can be used to determine the complete parameter set potentially contained in the geometry of three-dimensional folds: mechanical properties of natural rocks, maximum strain, and relative strength of the in-plane far-field load components. Furthermore, we show how folds in 3D amplify and that there is a second deformation mode, besides continuous amplification, where compression leads to a lateral rearrangement of blocks of folds. Finally, we demonstrate that the textbook prediction of egg carton-shaped dome and basin structures resulting from folding instabilities in constriction is largely oversimplified. The fold patterns resulting in this setting are curved, elongated folds with random orientation.

  19. In Vivo 3D Analysis of Thoracic Kinematics: Changes in Size and Shape During Breathing and Their Implications for Respiratory Function in Recent Humans and Fossil Hominins.

    PubMed

    Bastir, Markus; García-Martínez, Daniel; Torres-Tamayo, Nicole; Sanchis-Gimeno, Juan Alberto; O'Higgins, Paul; Utrilla, Cristina; Torres Sánchez, Isabel; García Río, Francisco

    2017-02-01

    The human ribcage expands and contracts during respiration as a result of the interaction between the morphology of the ribs, the costo-vertebral articulations and respiratory muscles. Variations in these factors are said to produce differences in the kinematics of the upper thorax and the lower thorax, but the extent and nature of any such differences and their functional implications have not yet been quantified. Applying geometric morphometrics we measured 402 three-dimensional (3D) landmarks and semilandmarks of 3D models built from computed tomographic scans of thoraces of 20 healthy adult subjects in maximal forced inspiration (FI) and expiration (FE). We addressed the hypothesis that upper and lower parts of the ribcage differ in kinematics and compared different models of functional compartmentalization. During inspiration the thorax superior to the level of the sixth ribs undergoes antero-posterior expansion that differs significantly from the medio-lateral expansion characteristic of the thorax below this level. This supports previous suggestions for dividing the thorax into a pulmonary and diaphragmatic part. While both compartments differed significantly in mean size and shape during FE and FI the size changes in the lower compartment were significantly larger. Additionally, for the same degree of kinematic shape change, the pulmonary thorax changes less in size than the diaphragmatic thorax. Therefore, variations in the form and function of the diaphragmatic thorax will have a strong impact on respiratory function. This has important implications for interpreting differences in thorax shape in terms of respiratory functional differences within and among recent humans and fossil hominins. Anat Rec, 300:255-264, 2017. © 2016 Wiley Periodicals, Inc.

  20. Assessment of 3D Models Used in Contours Studies

    ERIC Educational Resources Information Center

    Alvarez, F. J. Ayala; Parra, E. B. Blazquez; Tubio, F. Montes

    2015-01-01

    This paper presents an experimental research focusing on the view of first year students. The aim is to check the quality of implementing 3D models integrated in the curriculum. We search to determine students' preference between the various means facilitated in order to understand the given subject. Students have been respondents to prove the…

  1. 3D tomodosimetry using long scintillating fibers: a feasibility study.

    PubMed

    Goulet, Mathieu; Archambault, Louis; Beaulieu, Luc; Gingras, Luc

    2013-10-01

    3D dosimetry is recognized as an ideal for patient-specific quality assurance (QA) of highly conformal radiotherapy treatments. However, existing 3D dosimeters are not straightforward to implement in the clinic, as their read-out procedure is often tedious and their accuracy, precision, and∕or sample size exhibit limitations. The purpose of this work is to develop a 3D dosimeter based on the concept of tomodosimetry inside concentric cylindrical planes using long scintillating fibers for the QA of modern radiotherapy techniques such as intensity-modulated radiation therapy (IMRT) or intensity-modulated arc therapy (IMAT). Using a model-based simulation, scintillating fibers were modeled on three concentric cylindrical planes of radii 2.5, 5.0, and 7.5 cm, inside a 10 cm radius water-equivalent cylinder phantom. The phantom was set to rotate around its central axis, made parallel to the linac gantry axis of rotation. Light acquisitions were simulated using the calculated dose from the treatment planning software and reconstructed in each cylindrical plane at a resolution of 1 mm(2) using a total-variation minimization iterative reconstruction algorithm. The 3D dose was then interpolated from the reconstructed cylindrical plane doses at a resolution of 1 mm(3). Different scintillating fiber patterns were compared by varying the angle of each fiber in its cylindrical plane and introducing a light-tight cut in each fiber. The precision of the reconstructed cylindrical dose distribution was evaluated using a Poisson modeling of the acquired light signals and the accuracy of the interpolated 3D dose was evaluated using an IMRT clinical plan for a prostate case. Straight scintillating fiber patterns with light-tight cuts were the most accurate in cylindrical dose reconstruction, showing less than 0.5 mm distance-to-agreement in dose gradients and a mean local dose difference of less than 0.2% in the high dose region for a 10 × 10 cm(2) field. The precision attained

  2. A 3D measurement of the offset in paleoseismological studies

    NASA Astrophysics Data System (ADS)

    Ferrater, Marta; Echeverria, Anna; Masana, Eulàlia; Martínez-Díaz, José J.; Sharp, Warren D.

    2016-05-01

    The slip rate of a seismogenic fault is a crucial parameter for establishing the contribution of the fault to the seismic hazard. It is calculated from measurements of the offset of linear landforms, such channels, produced by the fault combined with their age. The three-dimensional measurement of offset in buried paleochannels is subject to uncertainties that need to be quantitatively assessed and propagated into the slip rate. Here, we present a set of adapted scripts to calculate the net, lateral and vertical tectonic offset components caused by faults, together with their associated uncertainties. This technique is applied here to a buried channel identified in the stratigraphic record during a paleoseismological study at the El Saltador site (Alhama de Murcia fault, Iberian Peninsula). After defining and measuring the coordinates of the key points of a buried channel in the walls of eight trenches excavated parallel to the fault, we (a) adjusted a 3D straight line to these points and then extrapolated the tendency of this line onto a simplified fault plane; (b) repeated these two steps for the segment of the channel in the other side of the fault; and (c) measured the distance between the two resulting intersection points with the fault plane. In doing so, we avoided the near fault modification of the channel trace and obtained a three-dimensional measurement of offset and its uncertainty. This methodology is a substantial modification of previous procedures that require excavating progressively towards the fault, leading to possible underestimation of offset due to diffuse deformation near the fault. Combining the offset with numerical dating of the buried channel via U-series on soil carbonate, we calculated a maximum estimate of the net slip rate and its vertical and lateral components for the Alhama de Murcia fault.

  3. Study, simulation and design of a 3D clinostat

    NASA Astrophysics Data System (ADS)

    Pavone, Valentina; Guarnieri, Vincenzo; Lobascio, Cesare; Soma, Aurelio; Bosso, Nicola; Lamantea, Matteo Maria

    High cost and limited number of physically executable experiments in space have introduced the need for ground simulation systems that enable preparing experiments to be carried out on board, identifying phenomena associated with the altered gravity conditions, and taking advantage of these conditions, as in Biotechnology. Among systems developed to simulate microgravity, especially for life sciences experiments, different types of clinostats were realized. This work deals with mechanical design of a three-dimensional clinostat and simulation of the dynamic behavior of the system by varying the operating parameters. The design and simulation phase was preceded by a careful analysis of the state of art and by the review of the most recent results, in particular from the major investigators of Life Sciences in Space. The mechanical design is quite innovative by adoption of a structure entirely in aluminum, which allows robustness while reducing the overall weight. The transmission system of motion has been optimized by means of brushless DC micro motors, light and compact, which helped to reduce weight, dimensions, power consumption and increase the reliability and durability of the system. The study of the dynamic behavior using SIMPACK, a multibody simulation software, led to results in line with those found in the most important and recent scientific publications. This model was also appropriately configured to represent any desired operating condition, and for eventual system scalability. It would be interesting to generate simulated hypogravity - e.g.: 0.38-g (Mars) or 0.17-g (Moon). This would allow to investigate how terrestrial life forms can grow in other planetary habitats, or to determine the gravity threshold response of different organisms. At the moment, such a system can only be achieved by centrifuges in real microgravity. We are confident that simulation and associated tests with our 3D clinostat can help adjusting the parameters allowing variable g

  4. Coupling GB-SAR and visual photography for 3D modelling of an Alpine glacier surface kinematics

    NASA Astrophysics Data System (ADS)

    Dematteis, Niccolò; Luzi, Guido; Giordan, Daniele; Zucca, Francesco; Allasia, Paolo

    2017-04-01

    We present the 3-dimensional modelling of a glacier kinematics, obtained by coupling the results of two monitoring campaigns, simultaneously collecting data from two different and independent remote sensing devices, focused on the surface deformation of the Planpincieux glacier, on the Italian side of the Mont Blanc massif. The analysed period lasted 25 days and occurred in correspondence of the beginning of the Alpine cold season. The unstable weather conditions, affecting both the monitored surfaces and the signal propagation, demanded an accurate understanding of the atmospheric effect and the development of a specific correction procedure for radar data. The considered devices are a low-cost optical photography station (OPS) and a ground-based synthetic aperture radar (GB-SAR). The OPS is placed frontally to the glacier surface and measures the daily motion components orthogonal to the line of sight (LOS). The processing is performed through spatial cross-correlation between consecutive images, acquired at the same hours to limit shadow effects. The images are orthorectified on a 1 m-resolution digital surface model (DSM) of the glacier and a pixel-to-metric conversion is performed. The GB-SAR acquires data every 16 minutes. The GB-SAR location is decided aiming at maximising the parallel condition to the LOS and the estimated direction of the main flow. The main processing steps include i) a coherence-driven pixel-selection criterion to identify glacier areas, ii) 2D unwrapping algorithm, iii) atmosphere phase screen (APS) filtering with a newly 2D polynomial model, function of the elevation. The radar maps are also georeferenced on the DSM. Finally, from the 3 different components of the glacier surface motion it is possible to reconstruct the actual deformation vector. The results are mapped on the DSM. The proposed method allows to determine the evolution of the 3-dimensional kinematics of the observed surface; it can be applied in general to the

  5. OB3D, a new set of 3D objects available for research: a web-based study

    PubMed Central

    Buffat, Stéphane; Chastres, Véronique; Bichot, Alain; Rider, Delphine; Benmussa, Frédéric; Lorenceau, Jean

    2014-01-01

    Studying object recognition is central to fundamental and clinical research on cognitive functions but suffers from the limitations of the available sets that cannot always be modified and adapted to meet the specific goals of each study. We here present a new set of 3D scans of real objects available on-line as ASCII files, OB3D. These files are lists of dots, each defined by a triplet of spatial coordinates and their normal that allow simple and highly versatile transformations and adaptations. We performed a web-based experiment to evaluate the minimal number of dots required for the denomination and categorization of these objects, thus providing a reference threshold. We further analyze several other variables derived from this data set, such as the correlations with object complexity. This new stimulus set, which was found to activate the Lower Occipital Complex (LOC) in another study, may be of interest for studies of cognitive functions in healthy participants and patients with cognitive impairments, including visual perception, language, memory, etc. PMID:25339920

  6. On 3D Dimension: Study cases for Archaeological sites

    NASA Astrophysics Data System (ADS)

    D'Urso, M. G.; Marino, C. L.; Rotondi, A.

    2014-04-01

    For more than a century the tridimensional vision has been of interest for scientists and users in several fields of application. The mathematical bases have remained substantially unchanged but only the new technologies have allowed us to make the vision really impressive. Photography opens new frontiers and has enriched of physical, mathematical, chemical, informatical and topographic notions by making the images so real to make the observer fully immersed into the represented scene. By means of active googless the 3D digital technique, commonly used for video games, makes possible animations without limitations in the dimension of the images thanks to the improved performances of the graphic processor units and related hardware components. In this paper we illustrate an experience made by the students of the MSc'degree course of Topography, active at the University of Cassino and Southern Lazio, in which the photography has been applied as an innovative technique for the surveying of cultural heritage. The tests foresee the use of traditional techniques of survey with 3D digital images and use of GPS sensors. The ultimate objective of our experience is the insertion in the web, allowing us the visualization of the 3D images equipped with all data. In conclusion these new methods of survey allow for the fusion of extremely different techniques, in such an impressive way to make them inseparable and justifying the origin of the neologism "Geomatics" coined at the Laval University (Canada) during the eighties.

  7. 3D tomodosimetry using long scintillating fibers: A feasibility study

    SciTech Connect

    Goulet, Mathieu; Archambault, Louis; Beaulieu, Luc; Gingras, Luc

    2013-10-15

    Purpose: 3D dosimetry is recognized as an ideal for patient-specific quality assurance (QA) of highly conformal radiotherapy treatments. However, existing 3D dosimeters are not straightforward to implement in the clinic, as their read-out procedure is often tedious and their accuracy, precision, and/or sample size exhibit limitations. The purpose of this work is to develop a 3D dosimeter based on the concept of tomodosimetry inside concentric cylindrical planes using long scintillating fibers for the QA of modern radiotherapy techniques such as intensity-modulated radiation therapy (IMRT) or intensity-modulated arc therapy (IMAT).Methods: Using a model-based simulation, scintillating fibers were modeled on three concentric cylindrical planes of radii 2.5, 5.0, and 7.5 cm, inside a 10 cm radius water-equivalent cylinder phantom. The phantom was set to rotate around its central axis, made parallel to the linac gantry axis of rotation. Light acquisitions were simulated using the calculated dose from the treatment planning software and reconstructed in each cylindrical plane at a resolution of 1 mm{sup 2} using a total-variation minimization iterative reconstruction algorithm. The 3D dose was then interpolated from the reconstructed cylindrical plane doses at a resolution of 1 mm{sup 3}. Different scintillating fiber patterns were compared by varying the angle of each fiber in its cylindrical plane and introducing a light-tight cut in each fiber. The precision of the reconstructed cylindrical dose distribution was evaluated using a Poisson modeling of the acquired light signals and the accuracy of the interpolated 3D dose was evaluated using an IMRT clinical plan for a prostate case.Results: Straight scintillating fiber patterns with light-tight cuts were the most accurate in cylindrical dose reconstruction, showing less than 0.5 mm distance-to-agreement in dose gradients and a mean local dose difference of less than 0.2% in the high dose region for a 10 × 10 cm{sup 2

  8. Clinical Study of 3D Imaging and 3D Printing Technique for Patient-Specific Instrumentation in Total Knee Arthroplasty.

    PubMed

    Qiu, Bing; Liu, Fei; Tang, Bensen; Deng, Biyong; Liu, Fang; Zhu, Weimin; Zhen, Dong; Xue, Mingyuan; Zhang, Mingjiao

    2017-01-25

    Patient-specific instrumentation (PSI) was designed to improve the accuracy of preoperative planning and postoperative prosthesis positioning in total knee arthroplasty (TKA). However, better understanding needs to be achieved due to the subtle nature of the PSI systems. In this study, 3D printing technique based on the image data of computed tomography (CT) has been utilized for optimal controlling of the surgical parameters. Two groups of TKA cases have been randomly selected as PSI group and control group with no significant difference of age and sex (p > 0.05). The PSI group is treated with 3D printed cutting guides whereas the control group is treated with conventional instrumentation (CI). By evaluating the proximal osteotomy amount, distal osteotomy amount, valgus angle, external rotation angle, and tibial posterior slope angle of patients, it can be found that the preoperative quantitative assessment and intraoperative changes can be controlled with PSI whereas CI is relied on experience. In terms of postoperative parameters, such as hip-knee-ankle (HKA), frontal femoral component (FFC), frontal tibial component (FTC), and lateral tibial component (LTC) angles, there is a significant improvement in achieving the desired implant position (p < 0.05). Assigned from the morphology of patients' knees, the PSI represents the convergence of congruent designs with current personalized treatment tools. The PSI can achieve less extremity alignment and greater accuracy of prosthesis implantation compared against control method, which indicates potential for optimal HKA, FFC, and FTC angles.

  9. MESA: A 3-D Eulerian hydrocode for penetration mechanics studies

    SciTech Connect

    Mandell, D.A.; Holian, K.S.; Henninger, R.

    1991-01-01

    We describe an explicit, finite-difference hydrocode, called MESA, and compare calculations to metal and ceramic plate impacts with spall and to Taylor cylinder tests. The MESA code was developed with support from DARPA, the Army and the Marine Corps for use in armor/anti-armor problems primarily, but the code has been used for a number of other applications. MESA includes 2-D and 3-D Eulerian hydrodynamics, a number of material strength and fracture models, and a programmed burn high explosives model. 15 refs., 4 figs.

  10. Performing accurate joint kinematics from 3-D in vivo image sequences through consensus-driven simultaneous registration.

    PubMed

    Jacq, Jean-José; Cresson, Thierry; Burdin, Valérie; Roux, Christian

    2008-05-01

    This paper addresses the problem of the robust registration of multiple observations of the same object. Such a problem typically arises whenever it becomes necessary to recover the trajectory of an evolving object observed through standard 3-D medical imaging techniques. The instances of the tracked object are assumed to be variously truncated, locally subject to morphological evolutions throughout the sequence, and imprinted with significant segmentation errors as well as significant noise perturbations. The algorithm operates through the robust and simultaneous registration of all surface instances of a given object through median consensus. This operation consists of two interwoven processes set up to work in close collaboration. The first one progressively generates a median and implicit shape computed with respect to current estimations of the registration transformations, while the other refines these transformations with respect to the current estimation of their median shape. When compared with standard robust techniques, tests reveal significant improvements, both in robustness and precision. The algorithm is based on widely-used techniques, and proves highly effective while offering great flexibility of utilization.

  11. A Mechanistic Study of Wetting Superhydrophobic Porous 3D Meshes.

    PubMed

    Yohe, Stefan T; Freedman, Jonathan D; Falde, Eric J; Colson, Yolonda L; Grinstaff, Mark W

    2013-08-07

    Superhydrophobic, porous, 3D materials composed of poly( ε -caprolactone) (PCL) and the hydrophobic polymer dopant poly(glycerol monostearate- co- ε -caprolactone) (PGC-C18) are fabricated using the electrospinning technique. These 3D materials are distinct from 2D superhydrophobic surfaces, with maintenance of air at the surface as well as within the bulk of the material. These superhydrophobic materials float in water, and when held underwater and pressed, an air bubble is released and will rise to the surface. By changing the PGC-C18 doping concentration in the meshes and/or the fiber size from the micro- to nanoscale, the long-term stability of the entrapped air layer is controlled. The rate of water infiltration into the meshes, and the resulting displacement of the entrapped air, is quantitatively measured using X-ray computed tomography. The properties of the meshes are further probed using surfactants and solvents of different surface tensions. Finally, the application of hydraulic pressure is used to quantify the breakthrough pressure to wet the meshes. The tools for fabrication and analysis of these superhydrophobic materials as well as the ability to control the robustness of the entrapped air layer are highly desirable for a number of existing and emerging applications.

  12. A Mechanistic Study of Wetting Superhydrophobic Porous 3D Meshes

    PubMed Central

    Yohe, Stefan T.; Freedman, Jonathan D.; Falde, Eric J.; Colson, Yolonda L.; Grinstaff, Mark W.

    2014-01-01

    Superhydrophobic, porous, 3D materials composed of poly( ε -caprolactone) (PCL) and the hydrophobic polymer dopant poly(glycerol monostearate-co- ε -caprolactone) (PGC-C18) are fabricated using the electrospinning technique. These 3D materials are distinct from 2D superhydrophobic surfaces, with maintenance of air at the surface as well as within the bulk of the material. These superhydrophobic materials float in water, and when held underwater and pressed, an air bubble is released and will rise to the surface. By changing the PGC-C18 doping concentration in the meshes and/or the fiber size from the micro- to nanoscale, the long-term stability of the entrapped air layer is controlled. The rate of water infiltration into the meshes, and the resulting displacement of the entrapped air, is quantitatively measured using X-ray computed tomography. The properties of the meshes are further probed using surfactants and solvents of different surface tensions. Finally, the application of hydraulic pressure is used to quantify the breakthrough pressure to wet the meshes. The tools for fabrication and analysis of these superhydrophobic materials as well as the ability to control the robustness of the entrapped air layer are highly desirable for a number of existing and emerging applications. PMID:25309305

  13. Study on 3D CFBG vibration sensor and its application

    NASA Astrophysics Data System (ADS)

    Nan, Qiuming; Li, Sheng

    2016-03-01

    A novel variety of three dimensional (3D) vibration sensor based on chirped fiber Bragg grating (CFBG) is developed to measure 3D vibration in the mechanical equipment field. The sensor is composed of three independent vibration sensing units. Each unit uses double matched chirped gratings as sensing elements, and the sensing signal is processed by the edge filtering demodulation method. The structure and principle of the sensor are theoretically analyzed, and its performances are obtained from some experiments and the results are as follows: operating frequency range of the sensor is 10 Hz‒500 Hz; acceleration measurement range is 2 m·s-2‒30 m·s-2; sensitivity is about 70 mV/m·s-2; crosstalk coefficient is greater than 22 dB; self-compensation for temperature is available. Eventually the sensor is applied to monitor the vibration state of radiation pump. Seen from its experiments and applications, the sensor has good sensing performances, which can meet a certain requirement for some engineering measurement.

  14. Markerless 3D motion capture for animal locomotion studies

    PubMed Central

    Sellers, William Irvin; Hirasaki, Eishi

    2014-01-01

    ABSTRACT Obtaining quantitative data describing the movements of animals is an essential step in understanding their locomotor biology. Outside the laboratory, measuring animal locomotion often relies on video-based approaches and analysis is hampered because of difficulties in calibration and often the limited availability of possible camera positions. It is also usually restricted to two dimensions, which is often an undesirable over-simplification given the essentially three-dimensional nature of many locomotor performances. In this paper we demonstrate a fully three-dimensional approach based on 3D photogrammetric reconstruction using multiple, synchronised video cameras. This approach allows full calibration based on the separation of the individual cameras and will work fully automatically with completely unmarked and undisturbed animals. As such it has the potential to revolutionise work carried out on free-ranging animals in sanctuaries and zoological gardens where ad hoc approaches are essential and access within enclosures often severely restricted. The paper demonstrates the effectiveness of video-based 3D photogrammetry with examples from primates and birds, as well as discussing the current limitations of this technique and illustrating the accuracies that can be obtained. All the software required is open source so this can be a very cost effective approach and provides a methodology of obtaining data in situations where other approaches would be completely ineffective. PMID:24972869

  15. 3D Modeling and Printing in History/Social Studies Classrooms: Initial Lessons and Insights

    ERIC Educational Resources Information Center

    Maloy, Robert; Trust, Torrey; Kommers, Suzan; Malinowski, Allison; LaRoche, Irene

    2017-01-01

    This exploratory study examines the use of 3D technology by teachers and students in four middle school history/social studies classrooms. As part of a university-developed 3D Printing 4 Teaching & Learning project, teachers integrated 3D modeling and printing into curriculum topics in world geography, U.S. history, and government/civics.…

  16. Central South Atlantic kinematics: a 3D ocean basin-scale model of the Walvis Ridge and Rio Grande Rise

    NASA Astrophysics Data System (ADS)

    Bird, D. E.; Hall, S. A.

    2009-12-01

    Prior to the breakup of western Gondwana, ca. 130 Ma, the Tristan da Cuhna mantle plume produced the eastern South American Parana, and western African Etendeka, flood basalts. As the South Atlantic basin opened, the ridge-centered plume produced seaward extending hotspot tracks: Rio Grande Rise on the South American Plate, and Walvis Ridge on the African Plate. Several ocean floor edifices on the hotspot trends appear to produce lower than expected amplitude free air gravity anomalies, suggesting that they are composed of lower density material. We have constructed a 3D gravity model of the South Atlantic basin to examine variations in crustal density associated with the hot spot trends. The model, which encompasses a region that extends from 46°S to 10 °S and from 20°E to 60°W, comprises the following layers: water, sediment, crust, and upper mantle. Variable density sediment and upper mantle layers are incorporated to estimate density changes related to sediment thickness and compaction, and upper mantle temperatures, respectively. The initial Moho horizon is estimated from isostatic equilibrium calculations; however the isostatic effect is scaled away from the seafloor spreading center to simulate the active spreading center. Three open-file grids were used to generate the model: satellite-derived free air gravity, global topography, and sediment thickness of the world. Inverting the model for crustal density reveals a distribution of low-density areas: along the coasts, the seafloor spreading axis, and along the Rio Grande Rise and Walvis Ridge hotspot trends. Coastal and spreading axis low density areas are thought to be related to continental crust and high temperature upper mantle. Hotspot track low density areas might be related to variable densities within the volcanic edifices, variations in their crustal thickness, or upper mantle densities beneath them. Detailed 2D models approximate reasonable density and geometry limits along select transects

  17. Organizational Learning Goes Virtual?: A Study of Employees' Learning Achievement in Stereoscopic 3D Virtual Reality

    ERIC Educational Resources Information Center

    Lau, Kung Wong

    2015-01-01

    Purpose: This study aims to deepen understanding of the use of stereoscopic 3D technology (stereo3D) in facilitating organizational learning. The emergence of advanced virtual technologies, in particular to the stereo3D virtual reality, has fundamentally changed the ways in which organizations train their employees. However, in academic or…

  18. Organizational Learning Goes Virtual?: A Study of Employees' Learning Achievement in Stereoscopic 3D Virtual Reality

    ERIC Educational Resources Information Center

    Lau, Kung Wong

    2015-01-01

    Purpose: This study aims to deepen understanding of the use of stereoscopic 3D technology (stereo3D) in facilitating organizational learning. The emergence of advanced virtual technologies, in particular to the stereo3D virtual reality, has fundamentally changed the ways in which organizations train their employees. However, in academic or…

  19. Comparison of 3D-OP-OSEM and 3D-FBP reconstruction algorithms for High-Resolution Research Tomograph studies: effects of randoms estimation methods

    NASA Astrophysics Data System (ADS)

    van Velden, Floris H. P.; Kloet, Reina W.; van Berckel, Bart N. M.; Wolfensberger, Saskia P. A.; Lammertsma, Adriaan A.; Boellaard, Ronald

    2008-06-01

    The High-Resolution Research Tomograph (HRRT) is a dedicated human brain positron emission tomography (PET) scanner. Recently, a 3D filtered backprojection (3D-FBP) reconstruction method has been implemented to reduce bias in short duration frames, currently observed in 3D ordinary Poisson OSEM (3D-OP-OSEM) reconstructions. Further improvements might be expected using a new method of variance reduction on randoms (VRR) based on coincidence histograms instead of using the delayed window technique (DW) to estimate randoms. The goal of this study was to evaluate VRR in combination with 3D-OP-OSEM and 3D-FBP reconstruction techniques. To this end, several phantom studies and a human brain study were performed. For most phantom studies, 3D-OP-OSEM showed higher accuracy of observed activity concentrations with VRR than with DW. However, both positive and negative deviations in reconstructed activity concentrations and large biases of grey to white matter contrast ratio (up to 88%) were still observed as a function of scan statistics. Moreover 3D-OP-OSEM+VRR also showed bias up to 64% in clinical data, i.e. in some pharmacokinetic parameters as compared with those obtained with 3D-FBP+VRR. In the case of 3D-FBP, VRR showed similar results as DW for both phantom and clinical data, except that VRR showed a better standard deviation of 6-10%. Therefore, VRR should be used to correct for randoms in HRRT PET studies.

  20. Study on portable optical 3D coordinate measuring system

    NASA Astrophysics Data System (ADS)

    Ren, Tongqun; Zhu, Jigui; Guo, Yinbiao

    2009-05-01

    A portable optical 3D coordinate measuring system based on digital Close Range Photogrammetry (CRP) technology and binocular stereo vision theory is researched. Three ultra-red LED with high stability is set on a hand-hold target to provide measuring feature and establish target coordinate system. Ray intersection based field directional calibrating is done for the intersectant binocular measurement system composed of two cameras by a reference ruler. The hand-hold target controlled by Bluetooth wireless communication is free moved to implement contact measurement. The position of ceramic contact ball is pre-calibrated accurately. The coordinates of target feature points are obtained by binocular stereo vision model from the stereo images pair taken by cameras. Combining radius compensation for contact ball and residual error correction, object point can be resolved by transfer of axes using target coordinate system as intermediary. This system is suitable for on-field large-scale measurement because of its excellent portability, high precision, wide measuring volume, great adaptability and satisfying automatization. It is tested that the measuring precision is near to +/-0.1mm/m.

  1. A comparative study between a rectilinear 3-D seismic survey and a concentric-circle 3-D seismic survey

    SciTech Connect

    Maldonado, B.; Hussein, H.S.

    1994-12-31

    Due to the rectilinear nature of the previous 3D seismic survey, the details necessary for proper interpretation were absent. Theoretically, concentric 3D seismic technology may provide an avenue for gaining more and higher quality data coverage. Problems associated with recording a rectilinear 3D seismic grid over the salt dome in this area have created the need to investigate the use of such procedures as the concentric-circle 3D seismic acquisition technique. The difficulty of imaging salt dome flanks with conventional rectilinear 3D seismic may be a result of the inability to precisely predict the lateral velocity-field variation adjacent to both salt and sediments. The dramatic difference in the interval velocities of salt and sediments causes the returning ray to severely deviate from being a hyperbolic path. This hampers the ability to predict imaging points near the salt/sediment interface. Perhaps the most difficult areas to image with rectilinear seismic surveys are underneath salt overhangs. Modeling suggests that a significant increase in the number of rays captured from beneath a salt overhang can be achieved with the concentric-circle method. This paper demonstrates the use of the ``circle shoot`` on a survey conducted over a salt dome in the Gulf of Mexico. A total of 80 concentric circles cover an area which is equivalent to 31,000 acres. The final post-stack data were sorted into bins with dimensions of 25 meters by 25 meters. A comparison of 3D rectilinear shooting vs. 3D concentric circle shooting over the same area will show an improvement in data quality and signal-to-noise characteristics.

  2. Deciphering the bipolar planetary nebula Abell 14 with 3D ionization and morphological studies

    NASA Astrophysics Data System (ADS)

    Akras, S.; Clyne, N.; Boumis, P.; Monteiro, H.; Gonçalves, D. R.; Redman, M. P.; Williams, S.

    2016-04-01

    Abell 14 is a poorly studied object despite being considered a born-again planetary nebula. We performed a detailed study of its 3D morphology and ionization structure using the SHAPE and MOCASSIN codes. We found that Abell 14 is a highly evolved, bipolar nebula with a kinematical age of ˜19 400 yr for a distance of 4 kpc. The high He abundance, and N/O ratio indicate a progenitor of 5 M⊙ that has experienced the third dredge-up and hot bottom burning phases. The stellar parameters of the central source reveal a star at a highly evolved stage near to the white dwarf cooling track, being inconsistent with the born-again scenario. The nebula shows unexpectedly strong [N I] λ5200 and [O I] λ6300 emission lines indicating possible shock interactions. Abell 14 appears to be a member of a small group of highly evolved, extreme type-I planetary nebulae (PNe). The members of this group lie at the lower-left corner of the PNe regime on the [N II]/Hα versus [S II]/Hα diagnostic diagram, where shock-excited regions/objects are also placed. The low luminosity of their central stars, in conjunction with the large physical size of the nebulae, result in a very low photoionization rate, which can make any contribution of shock interaction easily perceptible, even for small velocities.

  3. [3D Virtual Reality Laparoscopic Simulation in Surgical Education - Results of a Pilot Study].

    PubMed

    Kneist, W; Huber, T; Paschold, M; Lang, H

    2016-06-01

    The use of three-dimensional imaging in laparoscopy is a growing issue and has led to 3D systems in laparoscopic simulation. Studies on box trainers have shown differing results concerning the benefit of 3D imaging. There are currently no studies analysing 3D imaging in virtual reality laparoscopy (VRL). Five surgical fellows, 10 surgical residents and 29 undergraduate medical students performed abstract and procedural tasks on a VRL simulator using conventional 2D and 3D imaging in a randomised order. No significant differences between the two imaging systems were shown for students or medical professionals. Participants who preferred three-dimensional imaging showed significantly better results in 2D as wells as in 3D imaging. First results on three-dimensional imaging on box trainers showed different results. Some studies resulted in an advantage of 3D imaging for laparoscopic novices. This study did not confirm the superiority of 3D imaging over conventional 2D imaging in a VRL simulator. In the present study on 3D imaging on a VRL simulator there was no significant advantage for 3D imaging compared to conventional 2D imaging. Georg Thieme Verlag KG Stuttgart · New York.

  4. Computational study of 3-D Benard convection with gravitational modulation

    NASA Technical Reports Server (NTRS)

    Biringen, S.; Peltier, L. J.

    1989-01-01

    In this numerical study the effects of a modulated gravitational field on three-dimensional Rayleigh-Benard convection with heating from above or from below is investigated. The full, nonlinear, time-dependent, Boussinesq Navier-Stokes equations and the energy equation are solved by a semiimplicit, pseudo-spectral procedure. This study has been motivated by the need to better understand the effects of vibration (G-Jitter) on fluids systems especially in the low gravity environment.

  5. Computational study of 3-D Benard convection with gravitational modulation

    NASA Technical Reports Server (NTRS)

    Biringen, S.; Peltier, L. J.

    1989-01-01

    In this numerical study the effects of a modulated gravitational field on three-dimensional Rayleigh-Benard convection with heating from above or from below is investigated. The full, nonlinear, time-dependent, Boussinesq Navier-Stokes equations and the energy equation are solved by a semiimplicit, pseudo-spectral procedure. This study has been motivated by the need to better understand the effects of vibration (G-Jitter) on fluids systems especially in the low gravity environment.

  6. Towards a collaborative and interoperable 3D Building database - A case study in Walloon region

    NASA Astrophysics Data System (ADS)

    Hajji, R.; Billen, R.

    2012-10-01

    The definition of a 3D Reference model is the prerequisite for increasing data interoperability and facing regional, national and international challenges around geographic information. Such action requires investigation of 3D user requirements and a collaborative framework to reach a consensus on common 3D data specifications. The paper presents premise reflexions about relevant issues to shape efforts towards a methodological and generic approach for dealing with a collaborative 3D reference model as a fundamental building block of 3D GIS collaborative solution. As a pilot project, we demonstrate, through a case study of the Liege city in Belgium, how data collected from different providers in Walloon region can be reengineered and then integrated in a 3D collaborative interoperable database compatible with CityGML.

  7. 3D MHD Study of Helias and Heliotron

    DTIC Science & Technology

    1992-09-01

    Loss and Radial Electric Field in Wendelstein VII-A Stellarator ; Oct. 1991 N IFS-i 18 Y. Kondoh and Y. Hosaka, Kernel Optimum Nearly-analytical...30 September -- 7 October 1992 IAEA-CN-56/D-1 -4 31) MIlD Study or Ielias and lIfliotron 1’. Hayashi. T. Sato, W. Lotz. P. Merkel, J. Nuifirenbyerg...AGENCY Ŕ •JI" " FOURTEENTH INTERNATIONAL CONFERENCE ON PLASMA Zo PHYSICS AND CONTROLLED NUCLEAR FUSION RESEARCH Wirzburg, Germany, 30 September - 7

  8. 3-D LDA study of a rectangular jet

    NASA Technical Reports Server (NTRS)

    Morrison, Gerald L.; Tatterson, Gary B.; Swan, David H.

    1988-01-01

    The flow field of a rectangular jet with a 2:1 aspect ratio was studied at an axial Reynolds number of 100,000 (Mach number 0.09) using three-dimensional laser Doppler velocimetry. The flow field survey resulted in mean velocity vector field plots and contour plots of the Reynolds stress tensor components. This paper presents contour plots in the planes of the jet minor and major axes at different axial locations. These data contribute substantially to currently available data of jet flow fields and will provide a valuable database for three-dimensional modeling.

  9. DIY 3D printing of custom orthopaedic implants: a proof of concept study.

    PubMed

    Frame, Mark; Leach, William

    2014-03-01

    3D printing is an emerging technology that is primarily used for aiding the design and prototyping of implants. As this technology has evolved it has now become possible to produce functional and definitive implants manufactured using a 3D printing process. This process, however, previously required a large financial investment in complex machinery and professionals skilled in 3D product design. Our pilot study's aim was to design and create a 3D printed custom orthopaedic implant using only freely available consumer hardware and software.

  10. Scalable nanohelices for predictive studies and enhanced 3D visualization.

    PubMed

    Meagher, Kwyn A; Doblack, Benjamin N; Ramirez, Mercedes; Davila, Lilian P

    2014-11-12

    Spring-like materials are ubiquitous in nature and of interest in nanotechnology for energy harvesting, hydrogen storage, and biological sensing applications. For predictive simulations, it has become increasingly important to be able to model the structure of nanohelices accurately. To study the effect of local structure on the properties of these complex geometries one must develop realistic models. To date, software packages are rather limited in creating atomistic helical models. This work focuses on producing atomistic models of silica glass (SiO₂) nanoribbons and nanosprings for molecular dynamics (MD) simulations. Using an MD model of "bulk" silica glass, two computational procedures to precisely create the shape of nanoribbons and nanosprings are presented. The first method employs the AWK programming language and open-source software to effectively carve various shapes of silica nanoribbons from the initial bulk model, using desired dimensions and parametric equations to define a helix. With this method, accurate atomistic silica nanoribbons can be generated for a range of pitch values and dimensions. The second method involves a more robust code which allows flexibility in modeling nanohelical structures. This approach utilizes a C++ code particularly written to implement pre-screening methods as well as the mathematical equations for a helix, resulting in greater precision and efficiency when creating nanospring models. Using these codes, well-defined and scalable nanoribbons and nanosprings suited for atomistic simulations can be effectively created. An added value in both open-source codes is that they can be adapted to reproduce different helical structures, independent of material. In addition, a MATLAB graphical user interface (GUI) is used to enhance learning through visualization and interaction for a general user with the atomistic helical structures. One application of these methods is the recent study of nanohelices via MD simulations for

  11. Scalable Nanohelices for Predictive Studies and Enhanced 3D Visualization

    PubMed Central

    Meagher, Kwyn A.; Doblack, Benjamin N.; Ramirez, Mercedes; Davila, Lilian P.

    2014-01-01

    Spring-like materials are ubiquitous in nature and of interest in nanotechnology for energy harvesting, hydrogen storage, and biological sensing applications.  For predictive simulations, it has become increasingly important to be able to model the structure of nanohelices accurately.  To study the effect of local structure on the properties of these complex geometries one must develop realistic models.  To date, software packages are rather limited in creating atomistic helical models.  This work focuses on producing atomistic models of silica glass (SiO2) nanoribbons and nanosprings for molecular dynamics (MD) simulations. Using an MD model of “bulk” silica glass, two computational procedures to precisely create the shape of nanoribbons and nanosprings are presented.  The first method employs the AWK programming language and open-source software to effectively carve various shapes of silica nanoribbons from the initial bulk model, using desired dimensions and parametric equations to define a helix.  With this method, accurate atomistic silica nanoribbons can be generated for a range of pitch values and dimensions.  The second method involves a more robust code which allows flexibility in modeling nanohelical structures.  This approach utilizes a C++ code particularly written to implement pre-screening methods as well as the mathematical equations for a helix, resulting in greater precision and efficiency when creating nanospring models.  Using these codes, well-defined and scalable nanoribbons and nanosprings suited for atomistic simulations can be effectively created.  An added value in both open-source codes is that they can be adapted to reproduce different helical structures, independent of material.  In addition, a MATLAB graphical user interface (GUI) is used to enhance learning through visualization and interaction for a general user with the atomistic helical structures.  One application of these methods is the recent study of nanohelices

  12. High pressure system for 3-D study of elastic anisotropy

    NASA Astrophysics Data System (ADS)

    Lokajicek, T.; Pros, Z.; Klima, K.

    2003-04-01

    New high pressure system was designed for the study of elastic anisotropy of condensed matter under high confining pressure up to 700 MPa. Simultaneously could be measured dynamic and static parameters: a) dynamic parameters by ultrasonic sounding, b) static parameters by measuring of spherical sample deformation. The measurement is carried out on spherical samples diameter 50 +/- 0.01 mm. Higher value of confining pressure was reached due to the new construction of sample positioning unit. The positioning unit is equipped with two Portecap step motors, which are located inside the vessel and make possible to rotate with the sphere and couple of piezoceramic transducers. Sample deformation is measured in the same direction as ultrasonic signal travel time. Only electric leads connects inner part of high pressure vessel with surrounding environment. Experimental set up enables: - simultaneous P-wave ultrasonic sounding, - measurement of current sample deformation at sounding points, - measurement of current value of confining pressure and - measurement of current stress media temperature. Air driven high pressure pump Haskel is used to produce high value of confining pressure up to 700 MPa. Ultrasonic signals are recorded by digital scope Agilent 54562 with sampling frequency 100 MHz. Control and measuring software was developed under Agilent VEE software environment working under MS Win 2000 operating system. Measuring set up was tested by measurement of monomineral spherical samples of quartz and corundum. Both of them have trigonal symmetry. The measurement showed that the P-wave velocity range of quartz was between 5.7-7.0 km/sec. and velocity range of corundum was between 9.7-10.9 km/sec. High pressure resistant LVDT transducers Mesing together with Intronix electronic unit were used to monitor sample deformation. Sample deformation is monitored with the accuracy of 0.1 micron. All test measurements proved the good accuracy of the whole measuring set up. This

  13. Developing and Testing a 3d Cadastral Data Model a Case Study in Australia

    NASA Astrophysics Data System (ADS)

    Aien, A.; Kalantari, M.; Rajabifard, A.; Williamson, I. P.; Shojaei, D.

    2012-07-01

    and physical extent of 3D properties and associated interests. The data model extends the traditional cadastral requirements to cover other applications such as urban planning and land valuation and taxation. A demonstration of a test system on the proposed data model is also presented. The test is based on a case study in Victoria, Australia to evaluate the effectiveness of the data model.

  14. Experimental Studies on the 3D Macro- and Microphysics of Magnetic Reconnection

    NASA Astrophysics Data System (ADS)

    Jara-Almonte, J.; Ji, H.; Yamada, M.; Yoo, J.; Fox, W. R., II

    2015-12-01

    Magnetic reconnection has been extensively studied in 2D geometries for many decades and considerable progress has been made in understating 2D reconnection physics, yet in real plasmas reconnection is fundamentally 3D in nature. Only recently has it become possible to study 3D reconnection using simulations, however some initial results have suggested that the inclusion of 3D effects does not strongly affect the basic properties of reconnection (e.g. reconnection rate or particle acceleration). Yet on the other hand, previous experiments, without direct 3D measurements, have implied that 3D effects could be important even in a quasi-2D system. Here we experimentally study both the (1) macro- and (2) microphysics of 3D reconnection in order to directly test the importance of 3D effects in a quasi-2D experiment. Using fully simultaneous 3D measurements, it is shown that during highly driven reconnection the macroscopic structure of the current sheet can become strongly 3D despite an essentially 2D upstream region. The correlation length along the current sheet is measured to be far shorter than suggested by kinetic simulations. Results from new experiments with stronger reconnection drive and diagnostics designed to estimate the 3D reconnection rate will be discussed. With regards to (2), the 3D microphysics, new diagnostics capable of measuring fluctuations at frequencies up to the electron cyclotron frequency (~ 300 MHz) have been developed and have identified the presence of very high frequency waves (~ 100 MHz) during asymmetric reconnection, localized to the low-density side. The detailed properties of these waves, including the measured power spectra and dispersion relation, will be discussed and compared with both previous satellite observations of high-frequency waves as well as with theoretical predictions on the generation of whistler waves during reconnection.

  15. Possibility of reconstruction of dental plaster cast from 3D digital study models

    PubMed Central

    2013-01-01

    Objectives To compare traditional plaster casts, digital models and 3D printed copies of dental plaster casts based on various criteria. To determine whether 3D printed copies obtained using open source system RepRap can replace traditional plaster casts in dental practice. To compare and contrast the qualities of two possible 3D printing options – open source system RepRap and commercially available 3D printing. Design and settings A method comparison study on 10 dental plaster casts from the Orthodontic department, Department of Stomatology, 2nd medical Faulty, Charles University Prague, Czech Republic. Material and methods Each of 10 plaster casts were scanned by inEos Blue scanner and the printed on 3D printer RepRap [10 models] and ProJet HD3000 3D printer [1 model]. Linear measurements between selected points on the dental arches of upper and lower jaws on plaster casts and its 3D copy were recorded and statistically analyzed. Results 3D printed copies have many advantages over traditional plaster casts. The precision and accuracy of the RepRap 3D printed copies of plaster casts were confirmed based on the statistical analysis. Although the commercially available 3D printing enables to print more details than the RepRap system, it is expensive and for the purpose of clinical use can be replaced by the cheaper prints obtained from RepRap printed copies. Conclusions Scanning of the traditional plaster casts to obtain a digital model offers a pragmatic approach. The scans can subsequently be used as a template to print the plaster casts as required. Using 3D printers can replace traditional plaster casts primarily due to their accuracy and price. PMID:23721330

  16. Possibility of reconstruction of dental plaster cast from 3D digital study models.

    PubMed

    Kasparova, Magdalena; Grafova, Lucie; Dvorak, Petr; Dostalova, Tatjana; Prochazka, Ales; Eliasova, Hana; Prusa, Josef; Kakawand, Soroush

    2013-05-31

    To compare traditional plaster casts, digital models and 3D printed copies of dental plaster casts based on various criteria. To determine whether 3D printed copies obtained using open source system RepRap can replace traditional plaster casts in dental practice. To compare and contrast the qualities of two possible 3D printing options--source system RepRap and commercially available 3D printing. A method comparison study on 10 dental plaster casts from the Orthodontic department, Department of Stomatology, 2nd medical Faulty, Charles University Prague, Czech Republic. Each of 10 plaster casts were scanned by inEos Blue scanner and the printed on 3D printer RepRap [10 models] and ProJet HD3000 3D printer [1 model]. Linear measurements between selected points on the dental arches of upper and lower jaws on plaster casts and its 3D copy were recorded and statistically analyzed. 3D printed copies have many advantages over traditional plaster casts. The precision and accuracy of the RepRap 3D printed copies of plaster casts were confirmed based on the statistical analysis. Although the commercially available 3D printing enables to print more details than the RepRap system, it is expensive and for the purpose of clinical use can be replaced by the cheaper prints obtained from RepRap printed copies. Scanning of the traditional plaster casts to obtain a digital model offers a pragmatic approach. The scans can subsequently be used as a template to print the plaster casts as required. Using 3D printers can replace traditional plaster casts primarily due to their accuracy and price.

  17. Understanding Human Perception of Building Categories in Virtual 3d Cities - a User Study

    NASA Astrophysics Data System (ADS)

    Tutzauer, P.; Becker, S.; Niese, T.; Deussen, O.; Fritsch, D.

    2016-06-01

    Virtual 3D cities are becoming increasingly important as a means of visually communicating diverse urban-related information. To get a deeper understanding of a human's cognitive experience of virtual 3D cities, this paper presents a user study on the human ability to perceive building categories (e.g. residential home, office building, building with shops etc.) from geometric 3D building representations. The study reveals various dependencies between geometric properties of the 3D representations and the perceptibility of the building categories. Knowledge about which geometries are relevant, helpful or obstructive for perceiving a specific building category is derived. The importance and usability of such knowledge is demonstrated based on a perception-guided 3D building abstraction process.

  18. Improving Assistive Technology Service by Using 3D Printing: Three Case Studies.

    PubMed

    Watanabe, Takashi; Hatakeyama, Takuro; Tomiita, Mitsuru

    2015-01-01

    Assistive technology services are essential for adapting assistive devices to the individual needs of users with disabilities. In this study, we attempted to apply three-dimensional (3D) printing technology to three actual cases, and to study its use, effectiveness, and future applications. We assessed the usefulness of 3D printing technology by categorizing its utilization after reviewing the outcomes of these case studies. In future work, we aim to gather additional case studies and derive information on using 3D printing technology that will enable its effective application in the process of assistive technology services.

  19. Genre Matters: A Comparative Study on the Entertainment Effects of 3D in Cinematic Contexts

    NASA Astrophysics Data System (ADS)

    Ji, Qihao; Lee, Young Sun

    2014-09-01

    Built upon prior comparative studies of 3D and 2D films, the current project investigates the effects of 2D and 3D on viewers' perception of enjoyment, narrative engagement, presence, involvement, and flow across three movie genres (Action/fantasy vs. Drama vs. Documentary). Through a 2 by 3 mixed factorial design, participants (n = 102) were separated into two viewing conditions (2D and 3D) and watched three 15-min film segments. Result suggested both visual production methods are equally efficient in terms of eliciting people's enjoyment, narrative engagement, involvement, flow and presence, no effects of visual production method was found. In addition, through examining the genre effects in both 3D and 2D conditions, we found that 3D works better for action movies than documentaries in terms of eliciting viewers' perception of enjoyment and presence, similarly, it improves views' narrative engagement for documentaries than dramas substantially. Implications and limitations are discussed in detail.

  20. Effects of 6 degree elevation of the heels on 3D kinematics of the distal portion of the forelimb in the walking horse.

    PubMed

    Chateau, H; Degueurce, C; Denoix, J M

    2004-12-01

    Understanding of the biomechanical effects of heel elevation remains incomplete because in vivo studies performed with skin markers do not measure the actual movements of the 3 digital joints. To quantify the effects of 6 degree heel wedge on the 3-dimensional movements of the 4 distal segments of the forelimb in the walking horse. Four healthy horses were used. Kinematics of the distal segments was measured invasively with a system based on ultrasonic triangulation. Three-dimensional rotations of the digital joints were calculated by use of a 'joint coordinate system' (JCS). Data obtained with heel wedges were compared to those obtained with standard shoes during the stance phase of the stride. Heel wedges significantly increased maximal flexion of the proximal (PIPJ) and distal (DIPJ) interphalangeal joints and maximal extension (mean +/- s.d. +0.8 +/- 0.3 degrees) of the metacarpophalangeal joint (MPJ). Extension of the PIPJ and DIPJ was decreased at heel-off. Few effects were observed in extrasagittal planes of movement. Heel wedges affect the sagittal plane kinematics of the 3 digital joints. Controversial effects previously observed on the MPJ may be explained by the substantial involvement of the PIPJ, which was wrongly neglected in previous studies performed on the moving horse.

  1. Gait strategy in patients with Ehlers-Danlos syndrome hypermobility type: a kinematic and kinetic evaluation using 3D gait analysis.

    PubMed

    Galli, Manuela; Cimolin, Veronica; Rigoldi, Chiara; Castori, Marco; Celletti, Claudia; Albertini, Giorgio; Camerota, Filippo

    2011-01-01

    The aim of this study was to quantify the gait patterns of adults with joint hypermobility syndrome/Ehlers-Danlos syndrome (JHS/EDS-HT) hypermobility type, using Gait Analysis. We quantified the gait strategy in 12 JHS/EDS-HT adults individuals (age: 43.08+6.78 years) compared to 20 healthy controls (age: 37.23±8.91 years), in terms of kinematics and kinetics. JHS/EDS-HT individuals were characterized by a non-physiological gait pattern. In particular, spatio-temporal parameters evidenced lower anterior step length and higher stance phase duration in JHS/EDS-HT than controls. In term of kinematics, in JHS/EDS-HT patients the main gait limitations involved pelvis, distal joints and ankle joint. Conversely, hip and knee joint showed physiological values. Ankle moment and power revealed reduced peak values during terminal stance. Differences in stiffness at hip and ankle joints were found between JHS/EDS-HT and controls. JHS/EDS-HT patients showed significant decreased of Kh and Ka parameters very probably due to congenital hypotonia and ligament laxity. These findings help to elucidate the complex biomechanical changes in JHS/EDS-HT and may have a major role in the multidimensional evaluation and tailored management of these patients.

  2. 3D-Flow processor for a programmable Level-1 trigger (feasibility study)

    SciTech Connect

    Crosetto, D.

    1992-10-01

    A feasibility study has been made to use the 3D-Flow processor in a pipelined programmable parallel processing architecture to identify particles such as electrons, jets, muons, etc., in high-energy physics experiments.

  3. Three-dimensional (3D) printed endovascular simulation models: a feasibility study

    PubMed Central

    Nesbitt, Craig; McCaslin, James; Bagnall, Alan; Davey, Philip; Bose, Pentop; Williams, Rob

    2017-01-01

    Background Three-dimensional (3D) printing is a manufacturing process in which an object is created by specialist printers designed to print in additive layers to create a 3D object. Whilst there are initial promising medical applications of 3D printing, a lack of evidence to support its use remains a barrier for larger scale adoption into clinical practice. Endovascular virtual reality (VR) simulation plays an important role in the safe training of future endovascular practitioners, but existing VR models have disadvantages including cost and accessibility which could be addressed with 3D printing. Methods This study sought to evaluate the feasibility of 3D printing an anatomically accurate human aorta for the purposes of endovascular training. Results A 3D printed model was successfully designed and printed and used for endovascular simulation. The stages of development and practical applications are described. Feedback from 96 physicians who answered a series of questions using a 5 point Likert scale is presented. Conclusions Initial data supports the value of 3D printed endovascular models although further educational validation is required. PMID:28251121

  4. Differentiating bladder carcinoma from bladder wall using 3D textural features: an initial study

    NASA Astrophysics Data System (ADS)

    Xu, Xiaopan; Zhang, Xi; Liu, Yang; Tian, Qiang; Zhang, Guopeng; Lu, Hongbing

    2016-03-01

    Differentiating bladder tumors from wall tissues is of critical importance for the detection of invasion depth and cancer staging. The textural features embedded in bladder images have demonstrated their potentials in carcinomas detection and classification. The purpose of this study was to investigate the feasibility of differentiating bladder carcinoma from bladder wall using three-dimensional (3D) textural features extracted from MR bladder images. The widely used 2D Tamura features were firstly wholly extended to 3D, and then different types of 3D textural features including 3D features derived from gray level co-occurrence matrices (GLCM) and grey level-gradient co-occurrence matrix (GLGCM), as well as 3D Tamura features, were extracted from 23 volumes of interest (VOIs) of bladder tumors and 23 VOIs of patients' bladder wall. Statistical results show that 30 out of 47 features are significantly different between cancer tissues and wall tissues. Using these features with significant differences between these two types of tissues, classification performance with a supported vector machine (SVM) classifier demonstrates that the combination of three types of selected 3D features outperform that of using only one type of features. All the observations demonstrate that significant textural differences exist between carcinomatous tissues and bladder wall, and 3D textural analysis may be an effective way for noninvasive staging of bladder cancer.

  5. The Use of 3D Printing Technology in the Ilizarov Method Treatment: Pilot Study.

    PubMed

    Burzyńska, Karolina; Morasiewicz, Piotr; Filipiak, Jarosław

    2016-01-01

    Significant developments in additive manufacturing technology have occurred in recent years. 3D printing techniques can also be helpful in the Ilizarov method treatment. The aim of this study was to evaluate the usefulness of 3D printing technology in the Ilizarov method treatment. Physical models of bones used to plan the spatial design of Ilizarov external fixator were manufactured by FDM (Fused Deposition Modeling) spatial printing technology. Bone models were made of poly(L-lactide) (PLA). Printed 3D models of both lower leg bones allow doctors to prepare in advance for the Ilizarov method treatment: detailed consideration of the spatial configuration of the external fixation, experimental assembly of the Ilizarov external fixator onto the physical models of bones prior to surgery, planning individual osteotomy level and Kirschner wires introduction sites. Printed 3D bone models allow for accurate preparation of the Ilizarov apparatus spatially matched to the size of the bones and prospective bone distortion. Employment of the printed 3D models of bone will enable a more precise design of the apparatus, which is especially useful in multiplanar distortion and in the treatment of axis distortion and limb length discrepancy in young children. In the course of planning the use of physical models manufactured with additive technology, attention should be paid to certain technical aspects of model printing that have an impact on the accuracy of mapping of the geometry and physical properties of the model. 3D printing technique is very useful in 3D planning of the Ilizarov method treatment.

  6. Oxygen ingress study of 3D printed gaseous radiation detector enclosures

    SciTech Connect

    Steer, Christopher A.; Durose, Aaron

    2015-07-01

    As part of our ongoing studies into the potential application of 3D printing techniques to gaseous radiation detectors, we have studied the ability of 3D printed enclosures to resist environmental oxygen ingress. A set of cuboid and hexagonal prism shaped enclosures with wall thicknesses of 4 mm, 6 mm, 8 mm and 10 mm were designed and printed in nylon using a EOSINT P 730 Selective Laser Sintering 3D printer system These test enclosures provide a comparison of different environmental gas ingress for different 3D printing techniques. The rate of change of oxygen concentration was found to be linear, decreasing as the wall thickness increases. It was also found that the hexagonal prism geometry produced a lower rate of change of oxygen concentration compared with the cuboid shaped enclosures. Possible reasons as to why these results were obtained are discussed The implications for the this study for deployable systems are also discussed (authors)

  7. A study on radiative transfer effects in 3-D cloudy atmosphere using satellite data

    NASA Astrophysics Data System (ADS)

    Okata, M.; Nakajima, T.; Suzuki, K.; Inoue, T.; Nakajima, T. Y.; Okamoto, H.

    2017-01-01

    This study evaluates 3-D cloud effects on the radiation budget with a combined use of active sensor cloud profiling radar/CloudSat and imager Moderate Resolution Imaging Spectroradiometer/Aqua data on the A-train. An algorithm is devised for constructing 3-D cloud fields based on satellite-observed cloud information. The 3-D cloud fields thus constructed are used to calculate the broadband solar and thermal radiative fluxes with a 3-D radiative transfer code developed by the authors. The aim of this study is to investigate the effects of cloud morphology on solar radiative transfer in cloudy atmosphere. For this purpose, 3-D cloud fields are constructed with the new satellite-based method, to which full 3D-RT (radiative transfer) simulations are applied. The simulated 3-D radiation fields are then used to examine and quantify errors of existing typical plane-parallel approximations, i.e., Plane-Parallel Approximation, Independent Pixel Approximation and Tilted Independent Pixel Approximation. Such 3D-RT simulations also serve to address another objective of this study, i.e., to devise an accurate approximation and to characterize the observed specific 3D-RT effects by the cloud morphology based on knowledge of idealized 3D-RT effects. We introduce a modified approach based on an optimum value of diffusivity factor to better approximate the radiative fluxes for arbitrary solar zenith angle determined from the results of 3-D radiative transfer simulations to redeem the overcorrections of these approximations for large solar zenith angles (SZAs). This new approach, called Slant path Independent Pixel Approximation, is found to be better than other approximations when SZA is large for some cloud cases. Based on the SZA dependence of the errors of these approximations relative to 3-D computations, satellite-observed real cloud cases are found to fall into either of three types of different morphologies, i.e., isolated cloud type, upper cloud-roughened type and lower

  8. Computation of the 3D kinematics in a global frame over a 40m-long pathway using a rolling motion analysis system.

    PubMed

    Begon, Mickaël; Colloud, Floren; Fohanno, Vincent; Bahuaud, Pascal; Monnet, Tony

    2009-12-11

    A rolling motion analysis system has been purpose-built to acquire an accurate three-dimensional kinematics of human motion with large displacement. Using this device, the kinematics is collected in a local frame associated with the rolling motion analysis system. The purpose of this paper is to express the local kinematics of a subject walking on a 40 m-long pathway in a global system of co-ordinates. One participant performed five trials of walking while he was followed by a rolling eight camera optoelectronic motion analysis system. The kinematics of the trials were reconstructed in the global frame using two different algorithms and 82 markers placed on the floor organized in two parallel and horizontal lines. The maximal error ranged from 0.033 to 0.187 m (<0.5% of the volume diagonal). As a result, this device is accurate enough for acquiring the kinematics of cyclic activities with large displacements in ecological environment.

  9. Understanding the thermal history, exhumation patterns, and role of fault systems on Goodenough Island, Papua New Guinea: Insights from 3D thermo-kinematic modelling

    NASA Astrophysics Data System (ADS)

    Bermudez, M. A.; Baldwin, S.; Fitzgerald, P. G.; Braun, J.

    2012-12-01

    The world's youngest eclogites, exhumed from depths of ca. 90 km since 8 Ma, are located in the D'Entrecasteaux Islands in the active Woodlark rift of southeastern Papua New Guinea. These (U)HP rocks formed during/following subduction of Australian margin-derived volcaniclastic sediments, and were exhumed during rifting within the larger, obliquely convergent Australian-Pacific plate boundary zone. Several (U)HP exhumation mechanisms have been proposed including diapiric rise of buoyant crust from mantle to crustal depths, and rifting of heterogeneous crust ahead of the east-to-west propagating Woodlark seafloor spreading center. In order to constrain the relative importance of different exhumation mechanisms through time (i.e., timing and rates of diapirism vs crustal faulting), we apply 3D thermo-kinematic modeling (Pecube) to constrain cooling and exhumation histories derived from thermochronologic data from Goodenough Island, the western-most of the D'Entrecasteaux Islands. More than 500,000 Pecube inverse models were run to evaluate scenarios involving vertical exhumation velocities (i.e., simulating simple buoyancy due to diapirism), low-angle normal faulting and combinations of both processes. These preliminary models assume steady-state topography. Preliminary models (starting at 8 Ma) include: (i) continuous exhumation, (ii) two exhumation phases with different exhumation rates (increasing and/or decreasing), and (iii) three exhumation phases with variable exhumation rates. For buoyancy-only models, the first two scenarios (i and ii) result in poor fits between model-derived and observed (experimental) data. Notably, scenarios (i) and (ii) produce indistinguishable ages for all thermochronologic systems, uniformly long apatite fission-track (AFT) lengths, excessive temperatures at the Moho and geological starting parameters (depth, T) that are not consistent with other data. Scenario (iii) with three exhumation phases has the least misfit between model

  10. The application of transabdominal 3D ultrasound for the diagnosis of gastric varices: a preliminary study.

    PubMed

    Maruyama, Hitoshi; Kamezaki, Hidehiro; Kondo, Takayuki; Sekimoto, Tadashi; Shimada, Taro; Takahashi, Masanori; Yokosuka, Osamu

    2013-09-01

    The aim of this study was to determine the feasibility of using transabdominal three-dimensional (3D) colour Doppler ultrasound as a non-invasive tool to demonstrate and quantify gastric varices. A phantom study compared the 3D water flow volume data in a hose with the actual volume inside the hose at three different flow velocities. The prospective clinical study examined the reliability and reproducibility of 3D volume data for gastric varices (mild 28, moderate 26, large 8) in 62 patients. The 3D images were acquired using the colour Doppler with both convex and micro-convex probes. The phantom study showed a 12.4-17.6% difference between the 3D data and the actual volume with no difference between the two types of probes or three velocities. The detectability of gastric varices was identical between the two probes (54/62, 87.1%). However, the scanning efficiency was significantly greater for the micro-convex probe (66.9 ± 14.1%) than the convex probe (57.3 ± 14%, p=0.012). Body mass index was the only factor that had a significant relationship with the detectability of varices. The mean volume (mL) of the 3D signal was 0.82 ± 0.74 for mild varices, 5.48 ± 3.84 for moderate varices, and 10.63 ± 6.67 for large varices with significant differences between different grades. The intra-/inter-rater reliability was excellent. The method of 3D colour Doppler ultrasound is reliable and reproducible in the quantitative assessment of vascular volume and is applicable for grading gastric varices. This study may offer a practical usefulness for 3D ultrasonography as an alternative to endoscopy. Copyright © 2013 Elsevier Ireland Ltd. All rights reserved.

  11. Comparison of 2D versus 3D mammography with screening cases: an observer study

    NASA Astrophysics Data System (ADS)

    Fernandez, James Reza; Deshpande, Ruchi; Hovanessian-Larsen, Linda; Liu, Brent

    2012-02-01

    Breast cancer is the most common type of non-skin cancer in women. 2D mammography is a screening tool to aid in the early detection of breast cancer, but has diagnostic limitations of overlapping tissues, especially in dense breasts. 3D mammography has the potential to improve detection outcomes by increasing specificity, and a new 3D screening tool with a 3D display for mammography aims to improve performance and efficiency as compared to 2D mammography. An observer study using human studies collected from was performed to compare traditional 2D mammography with this new 3D mammography technique. A prior study using a mammography phantom revealed no difference in calcification detection, but improved mass detection in 2D as compared to 3D. There was a significant decrease in reading time for masses, calcifications, and normals in 3D compared to 2D, however, as well as more favorable confidence levels in reading normal cases. Data for this current study is currently being obtained, and a full report should be available in the next few weeks.

  12. Study of the suitability of 3D printing for Ultra-High Vacuum applications

    NASA Astrophysics Data System (ADS)

    Jenzer, Stéphane; Alves, Manuel; Delerue, Nicolas; Gonnin, Alexandre; Grasset, Denis; Letellier-Cohen, Frederic; Mercier, Bruno; Mistretta, Eric; Prevost, Christophe; Vion, Alexis; Wilmes, Jean-Pierre

    2017-07-01

    In the recent year additive manufacturing (3D printing) has revolutionized mechanical engineering by allowing the quick production of mechanical components with complex shapes. So far most of these components are made in plastic and therefore can not be used in accelerator beam pipes. We have investigated samples printed using a metal 3D printer to study their behavior under vacuum. We report on our first tests showing that such samples are vacuum compatible and comparing pumping time.

  13. Study of Multi-level Characteristics for 3D Vertical Resistive Switching Memory

    PubMed Central

    Bai, Yue; Wu, Huaqiang; Wu, Riga; Zhang, Ye; Deng, Ning; Yu, Zhiping; Qian, He

    2014-01-01

    Three-dimensional (3D) integration and multi-level cell (MLC) are two attractive technologies to achieve ultra-high density for mass storage applications. In this work, a three-layer 3D vertical AlOδ/Ta2O5-x/TaOy resistive random access memories were fabricated and characterized. The vertical cells in three layers show good uniformity and high performance (e.g. >1000X HRS/LRS windows, >1010 endurance cycles, >104 s retention times at 125°C). Meanwhile, four level MLC is demonstrated with two operation strategies, current controlled scheme (CCS) and voltage controlled scheme (VCS). The switching mechanism of 3D vertical RRAM cells is studied based on temperature-dependent transport characteristics. Furthermore, the applicability of CCS and VCS in 3D vertical RRAM array is compared using resistor network circuit simulation. PMID:25047906

  14. 3D current source density imaging based on acoustoelectric effect: a simulation study using unipolar pulses

    PubMed Central

    Yang, Renhuan; Li, Xu; Liu, Jun; He, Bin

    2011-01-01

    It is of importance to image electrical activity and properties of biological tissues. Recently hybrid imaging modality combing ultrasound scanning and source imaging through the acousto-electric (AE) effect has generated considerable interest. Such modality has the potential to provide high spatial resolution current density imaging by utilizing the pressure induced AE resistivity change confined at the ultrasound focus. In this study, we investigate a novel 3-dimensional (3D) ultrasound current source density imaging (UCSDI) approach using unipolar ultrasound pulses. Utilizing specially designed unipolar ultrasound pulses and by combining AE signals associated to the local resistivity changes at the focusing point, we are able to reconstruct the 3D current density distribution with the boundary voltage measurements obtained while performing a 3D ultrasound scan. We have shown in computer simulation that using the present method, it is feasible to image with high spatial resolution an arbitrary 3D current density distribution in an inhomogeneous conductive media. PMID:21628774

  15. Monoplane 3D reconstruction of mapping ablation catheters: a feasibility study.

    PubMed

    Fallavollita, P

    2010-01-01

    Radiofrequency (RF) catheter ablation has transformed treatment for arrhythmias and has become first-line therapy for some tachycardias. The precise localization of the arrhythmogenic site and the positioning of the RF catheter over that site are problematic: they can impair the efficiency of the procedure and are time consuming (several hours). This study evaluates the feasibility of using only single plane C-arm images in order to estimate the 3D coordinates of RF catheter electrodes in a cardiac phase. The method makes use of a priori 3D model of the RF mapping catheter assuming rigid body motion equations in order to estimate the 3D locations of the catheter tip-electrodes in single view C-arm fluoroscopy images. Validation is performed on both synthetic and clinical data using computer simulation models. The authors' monoplane reconstruction algorithm is applied to a 3D helix mimicking the shape of a catheter and undergoing solely rigid motion. Similarly, the authors test the feasibility of recovering nonrigid motion by applying their method on true 3D coordinates of 13 ventricular markers from a sheep's ventricle. The results of this study showed that the proposed monoplane algorithm recovers rigid motion adequately when using the spatial positions of a catheter in six consecutive C-arm image frames yielding maximum 3D root mean squares errors of 4.3 mm. On the other hand, the suggested algorithm did not recover nonrigid motion precisely as suggested by a maximum 3D root mean square value of 8 mm. Since RF catheter electrodes are rigid structures, the authors conclude that there is promise in recovering the 3D coordinates of the electrodes when making use of only single view images. Future work will involve adding nonrigid motion equations to their algorithm, which will then be applied to actual clinical data.

  16. Brachial plexus 3D reconstruction from MRI with dissection validation: a baseline study for clinical applications.

    PubMed

    Van de Velde, Joris; Bogaert, Stephanie; Vandemaele, Pieter; Huysse, Wouter; Achten, Eric; Leijnse, Joris; De Neve, Wilfried; Van Hoof, Tom

    2016-03-01

    The present study aimed to establish a baseline for detailed 3D brachial plexus reconstruction from magnetic resonance imaging (MRI). Concretely, the goal was to determine the individual brachial plexus anatomy with maximum detail and accuracy achievable, as yet irrespective of whether the methods used could be economically and practically applied in the clinical setting. Six embalmed cadavers were randomly taken for MRI imaging of the brachial plexus. Detailed two-dimensional (2D) segmentation for all brachial plexus parts was done. The 2D brachial plexus segmentations were 3D reconstructed using Mimics(®) software. Then, these 3D reconstructions were anatomically validated by dissection of the cadavers. After finalising the cadaver experiments, brachial plexus MRIs were obtained in three healthy male volunteers and the same reconstruction procedure as in vitro was followed. A procedure was developed for brachial plexus 3D reconstruction based on MRI without the use of any contrast agent. Anatomical validation of six cadaver brachial plexus reconstructions showed high correspondence with the dissected brachial plexuses. Anatomical variations of the main branches were equally present in the 3D reconstructions generated. However, there were also some differences that related to the difference between the surface anatomy of the nerve and the internal nerve structure. In vivo, it was possible to reconstruct the complete brachial plexus in such a manner that normal-appearing BPs were derived in a reproducible way. This study showed that the described procedure results in accurate and reproducible brachial plexus 3D reconstructions.

  17. Why 3D Cameras are Not Popular: A Qualitative User Study on Stereoscopic Photography Acceptance

    NASA Astrophysics Data System (ADS)

    Hakala, Jussi; Westman, Stina; Salmimaa, Marja; Pölönen, Monika; Järvenpää, Toni; Häkkinen, Jukka

    2014-03-01

    Digital stereoscopic 3D cameras have entered the consumer market in recent years, but the acceptance of this novel technology has not yet been studied. The aim of this study was to identify the benefits and problems that novice users encounter in 3D photography by equipping five users with 3D cameras for a 4-week trial. We gathered data using a weekly questionnaire, an exit interview, and a stereoscopic disparity analysis of the 699 photographs taken during the trial. The results indicate that the participants took photographs at too-close distances, which caused excessive disparities. They learned to avoid the problem to some extent; the number of failed photographs due to excessive stereoscopic disparity decreased 70 % in 4 weeks. The participants also developed a preference for subjects that included clear depth differences and started to avoid photographing people because they looked unnatural in 3D photographs. They also regarded flash-induced shadows and edge violations problematic because of the unnatural effects in the photographs. We propose in-camera assistance tools for 3D cameras to make 3D photography easier.

  18. The application of 3D image processing to studies of the musculoskeletal system

    NASA Astrophysics Data System (ADS)

    Hirsch, Bruce Elliot; Udupa, Jayaram K.; Siegler, Sorin; Winkelstein, Beth A.

    2009-10-01

    Three dimensional renditions of anatomical structures are commonly used to improve visualization, surgical planning, and patient education. However, such 3D images also contain information which is not readily apparent, and which can be mined to elucidate, for example, such parameters as joint kinematics, spacial relationships, and distortions of those relationships with movement. Here we describe two series of experiments which demonstrate the functional application of 3D imaging. The first concerns the joints of the ankle complex, where the usual description of motions in the talocrural joint is shown to be incomplete, and where the roles of the anterior talofibular and calcaneofibular ligaments are clarified in ankle sprains. Also, the biomechanical effects of two common surgical procedures for repairing torn ligaments were examined. The second series of experiments explores changes in the anatomical relationships between nerve elements and the cervical vertebrae with changes in neck position. They provide preliminary evidence that morphological differences may exist between asymptomatic subjects and patients with radiculopathy in certain positions, even when conventional imaging shows no difference.

  19. The performance & flow visualization studies of three-dimensional (3-D) wind turbine blade models

    NASA Astrophysics Data System (ADS)

    Sutrisno, Prajitno, Purnomo, W., Setyawan B.

    2016-06-01

    Recently, studies on the design of 3-D wind turbine blades have a less attention even though 3-D blade products are widely sold. In contrary, advanced studies in 3-D helicopter blade tip have been studied rigorously. Studies in wind turbine blade modeling are mostly assumed that blade spanwise sections behave as independent two-dimensional airfoils, implying that there is no exchange of momentum in the spanwise direction. Moreover, flow visualization experiments are infrequently conducted. Therefore, a modeling study of wind turbine blade with visualization experiment is needed to be improved to obtain a better understanding. The purpose of this study is to investigate the performance of 3-D wind turbine blade models with backward-forward swept and verify the flow patterns using flow visualization. In this research, the blade models are constructed based on the twist and chord distributions following Schmitz's formula. Forward and backward swept are added to the rotating blades. Based on this, the additional swept would enhance or diminish outward flow disturbance or stall development propagation on the spanwise blade surfaces to give better blade design. Some combinations, i. e., b lades with backward swept, provide a better 3-D favorable rotational force of the rotor system. The performance of the 3-D wind turbine system model is measured by a torque meter, employing Prony's braking system. Furthermore, the 3-D flow patterns around the rotating blade models are investigated by applying "tuft-visualization technique", to study the appearance of laminar, separated, and boundary layer flow patterns surrounding the 3-dimentional blade system.

  20. Rapid prototyping for tissue-engineered bone scaffold by 3D printing and biocompatibility study

    PubMed Central

    He, Hui-Yu; Zhang, Jia-Yu; Mi, Xue; Hu, Yang; Gu, Xiao-Yu

    2015-01-01

    The prototyping of tissue-engineered bone scaffold (calcined goat spongy bone-biphasic ceramic composite/PVA gel) by 3D printing was performed, and the biocompatibility of the fabricated bone scaffold was studied. Pre-designed STL file was imported into the GXYZ303010-XYLE 3D printing system, and the tissue-engineered bone scaffold was fabricated by 3D printing using gel extrusion. Rabbit bone marrow stromal cells (BMSCs) were cultured in vitro and then inoculated to the sterilized bone scaffold obtained by 3D printing. The growth of rabbit BMSCs on the bone scaffold was observed under the scanning electron microscope (SEM). The effect of the tissue-engineered bone scaffold on the proliferation and differentiation of rabbit BMSCs using MTT assay. Universal testing machine was adopted to test the tensile strength of the bone scaffold. The leachate of the bone scaffold was prepared and injected into the New Zealand rabbits. Cytotoxicity test, acute toxicity test, pyrogenic test and intracutaneous stimulation test were performed to assess the biocompatibility of the bone scaffold. Bone scaffold manufactured by 3D printing had uniform pore size with the porosity of about 68.3%. The pores were well interconnected, and the bone scaffold showed excellent mechanical property. Rabbit BMSCs grew and proliferated on the surface of the bone scaffold after adherence. MTT assay indicated that the proliferation and differentiation of rabbit BMSCs on the bone scaffold did not differ significantly from that of the cells in the control. In vivo experiments proved that the bone scaffold fabricated by 3D printing had no acute toxicity, pyrogenic reaction or stimulation. Bone scaffold manufactured by 3D printing allows the rabbit BMSCs to adhere, grow and proliferate and exhibits excellent biomechanical property and high biocompatibility. 3D printing has a good application prospect in the prototyping of tissue-engineered bone scaffold. PMID:26380018

  1. Rapid prototyping for tissue-engineered bone scaffold by 3D printing and biocompatibility study.

    PubMed

    He, Hui-Yu; Zhang, Jia-Yu; Mi, Xue; Hu, Yang; Gu, Xiao-Yu

    2015-01-01

    The prototyping of tissue-engineered bone scaffold (calcined goat spongy bone-biphasic ceramic composite/PVA gel) by 3D printing was performed, and the biocompatibility of the fabricated bone scaffold was studied. Pre-designed STL file was imported into the GXYZ303010-XYLE 3D printing system, and the tissue-engineered bone scaffold was fabricated by 3D printing using gel extrusion. Rabbit bone marrow stromal cells (BMSCs) were cultured in vitro and then inoculated to the sterilized bone scaffold obtained by 3D printing. The growth of rabbit BMSCs on the bone scaffold was observed under the scanning electron microscope (SEM). The effect of the tissue-engineered bone scaffold on the proliferation and differentiation of rabbit BMSCs using MTT assay. Universal testing machine was adopted to test the tensile strength of the bone scaffold. The leachate of the bone scaffold was prepared and injected into the New Zealand rabbits. Cytotoxicity test, acute toxicity test, pyrogenic test and intracutaneous stimulation test were performed to assess the biocompatibility of the bone scaffold. Bone scaffold manufactured by 3D printing had uniform pore size with the porosity of about 68.3%. The pores were well interconnected, and the bone scaffold showed excellent mechanical property. Rabbit BMSCs grew and proliferated on the surface of the bone scaffold after adherence. MTT assay indicated that the proliferation and differentiation of rabbit BMSCs on the bone scaffold did not differ significantly from that of the cells in the control. In vivo experiments proved that the bone scaffold fabricated by 3D printing had no acute toxicity, pyrogenic reaction or stimulation. Bone scaffold manufactured by 3D printing allows the rabbit BMSCs to adhere, grow and proliferate and exhibits excellent biomechanical property and high biocompatibility. 3D printing has a good application prospect in the prototyping of tissue-engineered bone scaffold.

  2. Receptor-based 3D-QSAR in Drug Design: Methods and Applications in Kinase Studies.

    PubMed

    Fang, Cheng; Xiao, Zhiyan

    2016-01-01

    Receptor-based 3D-QSAR strategy represents a superior integration of structure-based drug design (SBDD) and three-dimensional quantitative structure-activity relationship (3D-QSAR) analysis. It combines the accurate prediction of ligand poses by the SBDD approach with the good predictability and interpretability of statistical models derived from the 3D-QSAR approach. Extensive efforts have been devoted to the development of receptor-based 3D-QSAR methods and two alternative approaches have been exploited. One associates with computing the binding interactions between a receptor and a ligand to generate structure-based descriptors for QSAR analyses. The other concerns the application of various docking protocols to generate optimal ligand poses so as to provide reliable molecular alignments for the conventional 3D-QSAR operations. This review highlights new concepts and methodologies recently developed in the field of receptorbased 3D-QSAR, and in particular, covers its application in kinase studies.

  3. Mitral valve analysis using a novel 3D holographic display: a feasibility study of 3D ultrasound data converted to a holographic screen.

    PubMed

    Beitnes, Jan Otto; Klæboe, Lars Gunnar; Karlsen, Jørn Skaarud; Urheim, Stig

    2015-02-01

    The aim of the present study was to test the feasibility of analyzing 3D ultrasound data on a novel holographic display. An increasing number of mini-invasive procedures for mitral valve repair require more effective visualization to improve patient safety and speed of procedures. A novel 3D holographic display has been developed and may have the potential to guide interventional cardiac procedures in the near future. Forty patients with degenerative mitral valve disease were analyzed. All had complete 2D transthoracic (TTE) and transoesophageal (TEE) echocardiographic examinations. In addition, 3D TTE of the mitral valve was obtained and recordings were converted from the echo machine to the holographic screen. Visual inspection of the mitral valve during surgery or TEE served as the gold standard. 240 segments were analyzed by 2 independent observers. A total of 53 segments were prolapsing. The majority included P2 (31), the remaining located at A2 (8), A3 (6), P3 (5), P1 (2) and A1 (1). The sensitivity and specificity of the 3D display was 87 and 99 %, respectively (observer I), and for observer II 85 and 97 %, respectively. The accuracies and precisions were 96.7 and 97.9 %, respectively, (observer I), 94.3 and 88.2 % (observer II), and inter-observer agreement was 0.954 with Cohen's Kappa 0.86. We were able to convert 3D ultrasound data to the holographic display. A very high accuracy and precision was shown, demonstrating the feasibility of analyzing 3D echo of the mitral valve on the holographic screen.

  4. Protein-protein interaction networks studies and importance of 3D structure knowledge.

    PubMed

    Lu, Hui-Chun; Fornili, Arianna; Fraternali, Franca

    2013-12-01

    Protein-protein interaction networks (PPINs) are a powerful tool to study biological processes in living cells. In this review, we present the progress of PPIN studies from abstract to more detailed representations. We will focus on 3D interactome networks, which offer detailed information at the atomic level. This information can be exploited in understanding not only the underlying cellular mechanisms, but also how human variants and disease-causing mutations affect protein functions and complexes' stability. Recent studies have used structural information on PPINs to also understand the molecular mechanisms of binding partner selection. We will address the challenges in generating 3D PPINs due to the restricted number of solved protein structures. Finally, some of the current use of 3D PPINs will be discussed, highlighting their contribution to the studies in genotype-phenotype relationships and in the optimization of targeted studies to design novel chemical compounds for medical treatments.

  5. Seeing biological actions in 3D: An fMRI study

    PubMed Central

    Jastorff, Jan; Abdollahi, Rouhollah O.; Fasano, Fabrizio

    2015-01-01

    Abstract Precise kinematics or body configuration cannot be recovered from visual input without disparity information. Yet, no imaging study has investigated the role of disparity on action observation. Here, we investigated the interaction between disparity and the main cues of biological motion, kinematics and configuration, in two fMRI experiments. Stimuli were presented as point‐light figures, depicting complex action sequences lasting 21 s. We hypothesized that interactions could occur at any of the three levels of the action observation network, comprising occipitotemporal, parietal and premotor cortex, with premotor cortex being the most likely location. The main effects of kinematics and configuration confirmed that the biological motion sequences activated all three levels of the action observation network, validating our approach. The interaction between configuration and disparity activated only premotor cortex, whereas interactions between kinematics and disparity occurred at all levels of the action observation network but were strongest at the premotor level. Control experiments demonstrated that these interactions could not be accounted for by low level motion in depth, task effects, spatial attention, or eye movements, including vergence. These results underscore the role of premotor cortex in action observation, and in imitating others or responding to their actions. Hum Brain Mapp 37:203–219, 2016. © 2015 The Authors Human Brain Mapping Published by Wiley Periodicals, Inc. PMID:26510637

  6. Description of an evaluation system for knee kinematics in ligament lesions, by means of optical tracking and 3D tomography☆☆☆

    PubMed Central

    Fernandes, Tiago Lazzaretti; Ribeiro, Douglas Badillo; da Rocha, Diogo Cristo; Albuquerque, Cyro; Pereira, César Augusto Martins; Pedrinelli, André; Hernandez, Arnaldo José

    2014-01-01

    Objective To describe and demonstrate the viability of a method for evaluating knee kinematics, by means of a continuous passive motion (CPM) machine, before and after anterior cruciate ligament (ACL) injury. Methods This study was conducted on a knee from a cadaver, in a mechanical pivot-shift simulator, with evaluations using optical tracking, and also using computed tomography. Results This study demonstrated the viability of a protocol for measuring the rotation and translation of the knee, using reproducible and objective tools (error < 0.2 mm). The mechanized provocation system of the pivot-shift test was independent of the examiner and always allowed the same angular velocity and traction of 20 N throughout the movement. Conclusion The clinical relevance of this method lies in making inferences about the in vivo behavior of a knee with an ACL injury and providing greater methodological quality in future studies for measuring surgical techniques with grafts in relatively close positions. PMID:26229854

  7. Cancer Cytokines and the Relevance of 3D Cultures for Studying those Implicated in Human Cancers.

    PubMed

    Maddaly, Ravi; Subramaniyan, Aishwarya; Balasubramanian, Harini

    2017-03-06

    Cancers are complex conditions and involving several factors for oncogenesis and progression. Of the various factors influencing the physiology of cancers, cytokines are known to play significant roles as mediators of functions. Intricate cytokine networks have been identified in cancers and interest in cytokines associated with cancers has been gaining ground. Of late, some of these cytokines are even identified as potential targets for cancer therapy apart from a few others such as IL-6 being identified as markers for disease prognosis. Of the major contributors to cancer research, cancer cell lines occupy the top slot as the most widely used material in vitro. In vitro cell cultures have seen significant evolution by the introduction of 3 dimensional (3D) culture systems. 3D cell cultures are now widely accepted as excellent material for cancer research which surpasses the traditional monolayer cultures. Cancer research has benefitted from 3D cell cultures for understanding the various hallmarks of cancers. However, the potential of these culture systems are still unexploited for cancer cytokine research compared to the other aspects of cancers such as gene expression changes, drug-induced toxicity, morphology, angiogenesis and invasion. Considering the importance of cancer cytokines, 3D cell cultures can be better utilized in understanding their roles and functions. Some of the possibilities where 3D cell cultures can contribute to cancer cytokine research arise from the distinct morphology of the tumor spheroids, the extracellular matrix (ECM), and the spontaneous occurrence of nutrient and oxygen gradients. Also, the 3D culture models enable one to co-culture different types of cells as a simulation of in vivo conditions, enhancing their utility to study cancer cytokines. We review here the cancer associated cytokines the contributions of 3D cancer cell cultures for studying cancer cytokines. This article is protected by copyright. All rights reserved.

  8. 3D printed nanocomposite matrix for the study of breast cancer bone metastasis.

    PubMed

    Zhu, Wei; Holmes, Benjamin; Glazer, Robert I; Zhang, Lijie Grace

    2016-01-01

    Bone is one of the most common metastatic sites of breast cancer, but the underlying mechanisms remain unclear, in part due to an absence of advanced platforms for cancer culture and study that mimic the bone microenvironment. In the present study, we integrated a novel stereolithography-based 3D printer and a unique 3D printed nano-ink consisting of hydroxyapatite nanoparticles suspended in hydrogel to create a biomimetic bone-specific environment for evaluating breast cancer bone invasion. Breast cancer cells cultured in a geometrically optimized matrix exhibited spheroid morphology and migratory characteristics. Co-culture of tumor cells with bone marrow mesenchymal stem cells increased the formation of spheroid clusters. The 3D matrix also allowed for higher drug resistance of breast cancer cells than 2D culture. These results validate that our 3D bone matrix can mimic tumor bone microenvironments, suggesting that it can serve as a tool for studying metastasis and assessing drug sensitivity. From the Clinical Editor: Cancer remains a major cause of mortality for patients in the clinical setting. For breast cancer, bone is one of the most common metastatic sites. In this intriguing article, the authors developed a bone-like environment using 3D printing technology to investigate the underlying biology of bone metastasis. Their results would also allow a new model for other researchers who work on cancer to use. Copyright © 2015 Elsevier Inc. All rights reserved.

  9. Application of 3D photo-reconstruction in soil erosion studies

    NASA Astrophysics Data System (ADS)

    Castillo, Carlos; James, Michael; Pérez, Rafael; Gómez, Jose Alfonso

    2014-05-01

    3D photo-reconstruction (3D-PR) has been applied successfully to obtain elevation models using uncalibrated and nonmetric cameras for a range of geoscience applications (e.g. James and Robson, 2012), including gully erosion assessment (Castillo et al., 2012). However, its application in soil erosion studies is currently at the outset. The aim of this work is to compare 3D-PR with conventional techniques that have been employed traditionally for different purposes in soil erosion studies. In this preliminary work, we tested three applications that involve volume calculations: estimation of soil bulk density (BD), quantification of soil erosion at road banks (RB) and sedimentation rates behind check dams (CD). For each analysis, a PR field survey was carried out simultaneously with a conventional method (volume of water was used for BD, and total station surveys for RB and CD). For the 3D-PR technique, the accuracy as a function of the number of pictures taken was evaluated. In this study we explore the difference in the volume estimates between 3D-PR and conventional techniques as well as the time requirements for each method in order to compare their performance and optimal field of application.

  10. Study on Construction of 3d Building Based on Uav Images

    NASA Astrophysics Data System (ADS)

    Xie, F.; Lin, Z.; Gui, D.; Lin, H.

    2012-07-01

    Based on the characteristics of Unmanned Aerial Vehicle (UAV) system for low altitude aerial photogrammetry and the need of three dimensional (3D)city modeling, a method of fast 3D building modeling using the images from UAV carrying four-combined camera is studied. Firstly, by contrasting and analyzing the mosaic structures of the existing four-combined cameras, a new type of four-combined camera with special design of overlap images is designed, which improves the self-calibration function to achieve the high precision imaging by automatically eliminating the error of machinery deformation and the time lag with every exposure, and further reduce the weight of the imaging system. Secondly, several-angle images including vertical images and oblique images gotten by the UAV system are used for the detail measure of building surfaces and the texture extraction. Finally, two tests that are aerial photography with large scale mapping of 1:1000 and 3D building construction in Shandong University of Science and Technology and aerial photography with large scale mapping of 1:500 and 3D building construction in Henan University of Urban Construction, provide authentication model for construction of 3D building based on combined wide-angle camera images from UAV system. It is demonstrated that the UAV system for low altitude aerial photogrammetry can be used in the construction of 3D building production, and the technology solution in this paper offers a new, fast and technical plan for the 3D expression of the city landscape, fine modeling and visualization.

  11. Computational study of 3-D hot-spot initiation in shocked insensitive high-explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.; Manaa, M. R.; Nichols, A., III; Levesque, G.

    2012-03-01

    High-explosive (HE) material consists of large-sized grains with micron-sized embedded impurities and pores. Under various mechanical/thermal insults, these pores collapse generating hightemperature regions leading to ignition. A hydrodynamic study has been performed to investigate the mechanisms of pore collapse and hot spot initiation in TATB crystals, employing a multiphysics code, ALE3D, coupled to the chemistry module, Cheetah. This computational study includes reactive dynamics. Two-dimensional high-resolution large-scale meso-scale simulations have been performed. The parameter space is systematically studied by considering various shock strengths, pore diameters and multiple pore configurations. Preliminary 3-D simulations are undertaken to quantify the 3-D dynamics.

  12. Virgo cluster and field dwarf ellipticals in 3D - I. On the variety of stellar kinematic and line-strength properties

    NASA Astrophysics Data System (ADS)

    Ryś, Agnieszka; Falcón-Barroso, Jesús; van de Ven, Glenn

    2013-02-01

    We present the first large-scale stellar kinematic and line-strength maps for dwarf elliptical galaxies (nine in the Virgo cluster and three in the field environment) obtained with the SAURON (Spectrographic Areal Unit for Research on Optical Nebulae) integral-field unit. No two galaxies in our sample are alike: we see that the level of rotation is not tied to flattening (we have, e.g., round rotators and flattened non-rotators); we observe kinematic twists in one Virgo and one field object; we discover large-scale kinematically decoupled components in two field galaxies; we see varying gradients in line-strength maps, from nearly flat to strongly peaked in the centre. The great variety of morphological, kinematic and stellar population parameters seen in our data points to a formation scenario in which properties are shaped stochastically. A combined effect of ram-pressure stripping and galaxy harassment is the most probable explanation. We show the need for a comprehensive analysis of kinematic, dynamical and stellar population properties which will enable us to place dwarf ellipticals and processes that govern their evolution in the wider context of galaxy formation.

  13. Comparative studies on gravisensitive protists on ground (2D and 3D clinostats) and in microgravity

    NASA Astrophysics Data System (ADS)

    Hemmersbach, Ruth; Strauch, Sebastian M.; Seibt, Dieter; Schuber, Marianne

    2006-09-01

    In order to prepare and support space experiments, 2D and 3D clinostats are widely applied to study the influence of simulated weightlessness on biological systems. In order to evaluate the results a comparison between the data obtained in simulation experiments and in real microgravity is necessary. We are currently analyzing the gravity-dependent behavior of the protists Paramecium biaurelia (ciliate) and Euglena gracilis (photosynthetic flagellate) on these different experimental platforms. So far, first results are presented concerning the behaviour of Euglena on a 2D fast rotating clinostat and a 3D clinostat as well as under real microgravity conditions (TEXUS sounding rocket flight), of Paramecium on a 2D clinostat and in microgravity. Our data show similar results during 2D and 3D clinorotation compared to real microgravity with respect to loss of orientation (gravitaxis) of Paramecium and Euglena and a decrease of linearity of the cell tracks of Euglena. However, the increase of the mean swimming velocities, especially during 3D clinorotation (Euglena) and 2D clinorotation of Paramecium might indicate a persisting mechanostimulation of the cells. Further studies including long-term 2D and 3D clinostat exposition will enable us to demonstrate the qualification of the applied simulation methods.

  14. Study of objective evaluation indicators of 3D visual fatigue based on RDS related tasks

    NASA Astrophysics Data System (ADS)

    Huang, Yi; Liu, Yue; Zou, Bochao; Wang, Yongtian; Cheng, Dewen

    2015-03-01

    Three dimensional (3D) displays have witnessed rapid progress in recent years because of its highly realistic sensation and sense of presence to humanist users. However, the comfort issues of 3D display are often reported and thus restrict its wide applications. In order to study the objective evaluation indicators associated with 3D visual fatigue, an experiment is designed in which subjects are required to accomplish a task realized with random dot stereogram (RDS). The aim of designing the task is to induce 3D visual fatigue of subjects and exclude the impacts of monocular depth cues. The visual acuity, critical flicker frequency (CFF), reaction time and correct rate of subjects during the experiment are recorded and analyzed. Correlation of the experimental data with the subjective evaluation scores is studied to find which indicator is closely related to 3D visual fatigue. Analysis of the experimental data shows that the trends of the correct rate are in line with the result of subjective evaluation.

  15. Reaching the Limit of the Oculomotor Plant: 3D Kinematics after Abducens Nerve Stimulation during the Torsional Vestibulo-Ocular Reflex

    PubMed Central

    Meng, Hui; Angelaki, Dora E.

    2012-01-01

    Accumulating evidence shows that the oculomotor plant is capable of implementing aspects of three-dimensional kinematics such as Listing's law and the half-angle rule. But these studies have only examined the eye under static conditions or with movements that normally obey these rules (e.g., saccades and pursuit). Here we test the capability of the oculomotor plant to rearrange itself as necessary for non-half-angle behavior. Three monkeys (Macaca mulatta) fixated five vertically displaced targets along the midsagittal plane while sitting on a motion platform that rotated sinusoidally about the naso-occipital axis. This activated the torsional, rotational vestibulo-ocular reflex, which exhibits a zero-angle or negative-angle rule (depending on the visual stimulus). On random sinusoidal cycles, we stimulated the abducens nerve and observed the resultant eye movements. If the plant has rearranged itself to implement this non-half-angle behavior, then stimulation should reveal this behavior. On the other hand, if the plant is only capable of half-angle behavior, then stimulation should reveal a half-angle rule. We find the latter to be true and therefore additional neural signals are likely necessary to implement non-half-angle behavior. PMID:22993439

  16. Model studies of blood flow in basilar artery with 3D laser Doppler anemometer

    NASA Astrophysics Data System (ADS)

    Frolov, S. V.; Sindeev, S. V.; Liepsch, D.; Balasso, A.; Proskurin, S. G.; Potlov, A. Y.

    2015-03-01

    It is proposed an integrated approach to the study of basilar artery blood flow using 3D laser Doppler anemometer for identifying the causes of the formation and development of cerebral aneurysms. Feature of the work is the combined usage of both mathematical modeling and experimental methods. Described the experimental setup and the method of measurement of basilar artery blood flow, carried out in an interdisciplinary laboratory of Hospital Rechts der Isar of Technical University of Munich. The experimental setup used to simulate the blood flow in the basilar artery and to measure blood flow characteristics using 3D laser Doppler anemometer (3D LDA). Described a method of numerical studies carried out in Tambov State Technical University and the Bakoulev Center for Cardiovascular Surgery. Proposed an approach for sharing experimental and numerical methods of research to identify the causes of the basilar artery aneurysms.

  17. Data compression studies for NOAA Hyperspectral Environmental Suite (HES) using 3D integer wavelet transforms with 3D set partitioning in hierarchical trees

    NASA Astrophysics Data System (ADS)

    Huang, Bormin; Huang, Hung-Lung; Chen, Hao; Ahuja, Alok; Baggett, Kevin; Schmit, Timothy J.; Heymann, Roger W.

    2004-02-01

    The next-generation NOAA/NESDIS GOES-R hyperspectral sounder, now referred to as the HES (Hyperspectral Environmental Suite), will have hyperspectral resolution (over one thousand channels with spectral widths on the order of 0.5 wavenumber) and high spatial resolution (less than 10 km). Hyperspectral sounder data is a particular class of data requiring high accuracy for useful retrieval of atmospheric temperature and moisture profiles, surface characteristics, cloud properties, and trace gas information. Hence compression of these data sets is better to be lossless or near lossless. Given the large volume of three-dimensional hyperspectral sounder data that will be generated by the HES instrument, the use of robust data compression techniques will be beneficial to data transfer and archive. In this paper, we study lossless data compression for the HES using 3D integer wavelet transforms via the lifting schemes. The wavelet coefficients are processed with the 3D set partitioning in hierarchical trees (SPIHT) scheme followed by context-based arithmetic coding. SPIHT provides better coding efficiency than Shapiro's original embedded zerotree wavelet (EZW) algorithm. We extend the 3D SPIHT scheme to take on any size of 3D satellite data, each of whose dimensions need not be divisible by 2N, where N is the levels of the wavelet decomposition being performed. The compression ratios of various kinds of wavelet transforms are presented along with a comparison with the JPEG2000 codec.

  18. Lossless data compression studies for NOAA hyperspectral environmental suite using 3D integer wavelet transforms with 3D embedded zerotree coding

    NASA Astrophysics Data System (ADS)

    Huang, Bormin; Huang, Hung-Lung; Chen, Hao; Ahuja, Alok; Baggett, Kevin; Schmit, Timothy J.; Heymann, Roger W.

    2003-09-01

    Hyperspectral sounder data is a particular class of data that requires high accuracy for useful retrieval of atmospheric temperature and moisture profiles, surface characteristics, cloud properties, and trace gas information. Therefore compression of these data sets is better to be lossless or near lossless. The next-generation NOAA/NESDIS GOES-R hyperspectral sounder, now referred to as the HES (Hyperspectral Environmental Suite), will have hyperspectral resolution (over one thousand channels with spectral widths on the order of 0.5 wavenumber) and high spatial resolution (less than 10 km). Given the large volume of three-dimensional hyperspectral sounder data that will be generated by the HES instrument, the use of robust data compression techniques will be beneficial to data transfer and archive. In this paper, we study lossless data compression for the HES using 3D integer wavelet transforms via the lifting schemes. The wavelet coefficients are then processed with the 3D embedded zerotree wavelet (EZW) algorithm followed by context-based arithmetic coding. We extend the 3D EZW scheme to take on any size of 3D satellite data, each of whose dimensions need not be divisible by 2N, where N is the levels of the wavelet decomposition being performed. The compression ratios of various kinds of wavelet transforms are presented along with a comparison with the JPEG2000 codec.

  19. Studies of the 3D Structure of the Nucleon at Jlab

    SciTech Connect

    Avakian, Harut

    2016-07-01

    Studies of the 3D structure of the nucleon encoded in Transverse Momentum Dependent distribution and fragmentation functions of partons and Generalized Parton Distributions are among the key objectives of the JLab 12 GeV upgrade and the Electron Ion Collider. Main challenges in extracting 3D partonic distributions from precision measurements of hard scattering processes include clear understanding of leading twist QCD fundamentals, higher twist effects, and also correlations of hadron production in target and current fragmentation regions. In this contribution we discuss some ongoing studies and future measurements of spin-orbit correlations at Jefferson Lab.

  20. Carboxy-Methyl-Cellulose (CMC) hydrogel-filled 3-D scaffold: Preliminary study through a 3-D antiproliferative activity of Centella asiatica extract

    NASA Astrophysics Data System (ADS)

    Aizad, Syazwan; Yahaya, Badrul Hisham; Zubairi, Saiful Irwan

    2015-09-01

    This study focuses on the effects of using the water extract from Centella asiatica on the mortality of human lung cancer cells (A549) with the use of novel 3-D scaffolds infused with CMC hydrogel. A biodegradable polymer, poly (hydroxybutyrate-co-hydroxyvalerate) (PHBV) was used in this study as 3-D scaffolds, with some modifications made by introducing the gel structure on its pore, which provides a great biomimetic microenvironment for cells to grow apart from increasing the interaction between the cells and cell-bioactive extracts. The CMC showed a good hydrophilic characteristic with mean contact angle of 24.30 ± 22.03°. To ensure the CMC gel had good attachments with the scaffolds, a surface treatment was made before the CMC gel was infused into the scaffolds. The results showed that these modified scaffolds contained 42.41 ± 0.14% w/w of CMC gel, which indicated that the gel had already filled up the entire pore of 3-D scaffolds. Besides, the infused hydrogel scaffolds took only 24 hours to be saturated when absorbing the water. The viability of cancer cells by MTS assay after being treated with Centella asiatica showed that the scaffolds infused with CMC hydrogel had the cell viability of 46.89 ± 1.20% followed by porous 3-D model with 57.30 ± 1.60% of cell viability, and the 2-D model with 67.10 ± 1.10% of cell viability. The inhibitory activity in cell viability between 2-D and 3-D models did not differ significantly (p>0.05) due to the limitation of time in incubating the extract with the cell in the 3-D model microenvironment. In conclusion, with the application of 3-D scaffolds infused with CMC hydrogel, the extracts of Centella asiatica has been proven to have the ability to kill cancer cells and have a great potential to become one of the alternative methods in treating cancer patients.

  1. Best Practices for Designing Online Learning Environments for 3D Modeling Curricula: A Delphi Study

    ERIC Educational Resources Information Center

    Mapson, Kathleen Harrell

    2011-01-01

    The purpose of this study was to develop an inventory of best practices for designing online learning environments for 3D modeling curricula. Due to the instructional complexity of three-dimensional modeling, few have sought to develop this type of course for online teaching and learning. Considering this, the study aimed to collectively aggregate…

  2. Best Practices for Designing Online Learning Environments for 3D Modeling Curricula: A Delphi Study

    ERIC Educational Resources Information Center

    Mapson, Kathleen Harrell

    2011-01-01

    The purpose of this study was to develop an inventory of best practices for designing online learning environments for 3D modeling curricula. Due to the instructional complexity of three-dimensional modeling, few have sought to develop this type of course for online teaching and learning. Considering this, the study aimed to collectively aggregate…

  3. PRESAGETM - Development and optimization studies of a 3D radiochromic plastic dosimeter - Part 1

    NASA Astrophysics Data System (ADS)

    Adamovics, J.; Jordan, K.; Dietrich, J.

    2006-12-01

    This paper studies the polymerization of six different transparent plastics as potential 3D dosimeter matrices. In addition, six different leuco dyes and sixteen different free radical initiators were evaluated. Finally, the photoreactivity of the dosimeter was studied so that the effect of exposure to UV could be minimized.

  4. 3D Scanning Cloud Radar Observations at Azores during the ARM AMF field campaign: Reconstruction and study of 3D cloud structures and properties

    NASA Astrophysics Data System (ADS)

    Bowley, K.; Jo, I.; Tatarevic, A.; Kollias, P.

    2010-12-01

    The U.S. Department of Energy Atmospheric Radiation Measurement (ARM) Mobile Facility (AMF) has been operating at Graciosa Island (Azores) since May 2009. This 21-month field campaign focuses on the study of marine stratus clouds. The ARM/AMF instrumentation and location provides a unique opportunity to observe the cloud properties of marine stratocumulus utilizing a variety of active and passive remote sensors. In addition to the standard profiling instrumentation, the first scanning W-band (94-GHz) ARM Cloud Radar (SWACR) was deployed for a short two-month period (October-November 2009). Several scan strategies were tested during the SWACR deployment. The scan strategies were designed specifically to provide the ability to reconstruct the 3D cloud structure. The raw radar observations are quality controlled with the identification of radar volumes with significant detections, water vapor attenuation and unfolding of the radar Doppler velocity. The observations are also transformed from the original radar coordinate system (spherical) to a Cartesian coordinate system using an adaptive gridding algorithm. The 3D gridding of the radar observables, along with spatial data analysis, allow us to evaluate important issues, specifically spatial variability of cloud and drizzle structures. Column profiles of SWACR observables are used in combination with Liquid Water Path measurements from the collocated Microwave Radiometer (MWR) to develop new relationships to compute Liquid Water Content (LWC). The best possible estimate of the 3D LWC structure is reconstructed by assessing both our relationship and other known relationships between radar reflectivity and LWC. This is required in order to use the 3D cloud observations for radiative transfer modeling. Additional drizzle-identification techniques are also being developed to allow the isolation of 3D cloud-only or liquid-only fields. These types of variables have a key impact on the understanding of the radiative budget

  5. 3D electrical structure of porphyry copper deposit: A case study of Shaxi copper deposit

    NASA Astrophysics Data System (ADS)

    Chen, Xiang-Bin; Lü, Qing-Tian; Yan, Jia-Yong

    2012-06-01

    Located in Lu-Zong ore concentration area, middle-lower Yangtze metallogenic belt, ShaXi porphyry copper deposit is a typical hydrothermal deposit. To investigate the distribution of deep ore bodies and spatial characteristics of host structures, an AMT survey was conducted in mining area. Eighteen pseudo-2D resistivity sections were constructed through careful processing and inversion. These sections clearly show resistivity difference between the Silurian sandstones formation and quartz diorite porphyry and this porphyry copper formation was controlled by the highly resistive anticlines. Using 3D block Kriging interpolation method and 3D visualization techniques, we constructed a detailed 3D resistivity model of quartz diorite porphyry which shows the shape and spatial distribution of deep ore bodies. This case study can serve as a good example for future ore prospecting in and around this mining area.

  6. 3D study of intermetallics and their effect on the corrosion morphology of rheocast aluminium alloy

    SciTech Connect

    Mingo, B.; Arrabal, R.; Pardo, A.; Matykina, E.; Skeldon, P.

    2016-02-15

    In the present study, the effect of heat treatment T6.1 on the microstructure and corrosion behaviour of rheocast aluminium alloy A356 is investigated on the basis of 2D/3D characterization techniques and electrochemical and SKPFM measurements. Heat treatment strengthens the α-Al matrix, modifies the intermetallic particles and spheroidizes eutectic Si. These changes do not modify significantly the corrosion behaviour of the alloy. 3D SEM-Tomography clearly shows that the corrosion advances in the shape of narrow paths between closely spaced intermetallics without a major influence of eutectic Si. - Highlights: • T6.1 spheroidizes Si, strengthens the matrix and modifies the intermetallics. • Electrochemical behaviour of untreated and heat-treated alloys is similar. • 3D SEM-Tomography provides additional information on the corrosion morphology. • Corrosion advances as paths between intermetallics with little influence of Si.

  7. A Survey Study of the Blast Furnace at Kuangshan Village Using 3D Laser Scanning

    NASA Astrophysics Data System (ADS)

    Wang, Jin; Huang, Xing; Qian, Wei

    2017-01-01

    The blast furnace from the Northern Song Dynasty at Kuangshan Village is the tallest blast furnace that remains from ancient China. Previous studies have assumed that the furnace had a closed mouth. In this paper, a three-dimensional (3D) model of the blast furnace is constructed using 3D laser scanning technology, and accurate profile data are obtained using software. It is shown that the furnace throat is smaller than had been previously thought and that the furnace mouth is of the open type. This new furnace profile constitutes a discovery in the history of iron-smelting technology.

  8. 3D evaluation of palatal rugae for human identification using digital study models

    PubMed Central

    Taneva, Emilia D.; Johnson, Andrew; Viana, Grace; Evans, Carla A.

    2015-01-01

    Background: While there is literature suggesting that the palatal rugae could be used for human identification, most of these studies use two-dimensional (2D) approach. Aim: The aims of this study were to evaluate palatal ruga patterns using three-dimensional (3D) digital models; compare the most clinically relevant digital model conversion techniques for identification of the palatal rugae; develop a protocol for overlay registration; determine changes in palatal ruga individual patterns through time; and investigate the efficiency and accuracy of 3D matching processes between different individuals’ patterns. Material and Methods: Five cross sections in the anteroposterior dimension and four cross sections in the transverse dimension were computed which generated 18 2D variables. In addition, 13 3D variables were defined: The posterior point of incisive papilla (IP), and the most medial and lateral end points of the palatal rugae (R1MR, R1ML, R1LR, R1LL, R2MR, R2ML, R2LR, R2LL, R3MR, R3ML, R3LR, and R3LL). The deviation magnitude for each variable was statistically analyzed in this study. Five different data sets with the same 31 landmarks were evaluated in this study. Results: The results demonstrated that 2D images and linear measurements in the anteroposterior and transverse dimensions were not sufficient for comparing different digital model conversion techniques using the palatal rugae. 3D digital models proved to be a highly effective tool in evaluating different palatal ruga patterns. The 3D landmarks showed no statistically significant mean differences over time or as a result of orthodontic treatment. No statistically significant mean differences were found between different digital model conversion techniques, that is, between OrthoCAD™ and Ortho Insight 3D™, and between Ortho Insight 3D™ and the iTero® scans, when using 12 3D palatal rugae landmarks for comparison. Conclusion: Although 12 palatal 3D landmarks could be used for human

  9. Design, synthesis and 3D-QSAR study of cytotoxic flavonoid derivatives.

    PubMed

    Ou, Lili; Han, Shuang; Ding, Wenbo; Chen, Zhe; Ye, Ziqi; Yang, Hongyu; Zhang, Goulin; Lou, Yijia; Chen, Jian-Zhong; Yu, Yongping

    2011-08-01

    Three series of flavonoid derivatives were designed and synthesized. All synthesized compounds were evaluated for cytotoxic activities against five human cancer cell lines, including K562, PC-3, MCF-7, A549, and HO8910. Among the compounds tested, compound 9 d exhibited the most potent cytotoxic activity with IC(50) values of 2.76-6.98 μM. Further comparative molecular field analysis was performed to conduct a 3D quantitative structure-activity relationship study. The generated 3D-QSAR model could be used for further rational design of novel flavonoid analogs as highly potent cytotoxic agents.

  10. Paper/PMMA Hybrid 3D Cell Culture Microfluidic Platform for the Study of Cellular Crosstalk.

    PubMed

    Lei, Kin Fong; Chang, Chih-Hsuan; Chen, Ming-Jie

    2017-04-06

    Studying cellular crosstalk is important for understanding tumor initiation, progression, metastasis, and therapeutic resistance. Moreover, a three-dimensional (3D) cell culture model can provide a more physiologically meaningful culture microenvironment. However, studying cellular crosstalk in a 3D cell culture model involves tedious processing. In this study, a paper/poly(methyl methacrylate) (PMMA) hybrid 3D cell culture microfluidic platform was successfully developed for the study of cellular crosstalk. The platform was a paper substrate with culture microreactors placed on a PMMA substrate with hydrogel-infused channels. Different types of cells were directly seeded and cultured in the microreactors. Aberrant cell proliferation of the affected cells was induced by secretions from transfected cells, and the proliferation ratios were investigated using a colorimetric method. The results showed that the responses of cellular crosstalk were different in different types of cells. Moreover, neutralizing and competitive assays were performed to show the functionality of the platform. Additionally, the triggered signaling pathways of the affected cells were directly analyzed by a subsequent immunoassay. The microfluidic platform provides a simple method for studying cellular crosstalk and the corresponding signaling pathways in a 3D culture model.

  11. Impact of 3D root uptake on solute transport: a numerical study

    NASA Astrophysics Data System (ADS)

    Schröder, N.; Javaux, M.; Vanderborght, J.; Steffen, B.; Vereecken, H.

    2011-12-01

    Plant transpiration is an important component of the hydrological cycle. Through root water uptake, plants do not only affect the 3D soil water flow velocity distribution, but also solute movement in soil. This numerical study aims at investigating how solute fate is impacted by root uptake using the 3D biophysical model R-SWMS (Javaux et al., 2008). This model solves the Richards equation in 3D in the soil and the flow equation within the plant root xylem vessels. Furthermore, for solute transport simulations, the 3D particle tracker PARTRACE (Bechtold et al., 2011) was used. . We generated 3D virtual steady-state breakthrough curves (BTC) experiments in soils with transpiring plants. The averaged BTCs were then fitted with a 1D numerical flow model under steady-state conditions to obtain apparent CDE parameters. Two types of root architecture, a fibrous and a taprooted structure, were compared in virtual 3D experiments. The solute uptake type or the transpiration rate were also modified and we analyzed how these parameters affected apparent disperisivity and velocity profiles. Our simulation results show, that both, apparent velocity and dispersivity length are affected by water and solute root uptake. In addition, under high exclusion processes (slight or no active uptake), solute accumulates around roots and generates a long tailing to the breakthrough curves, which cannot be reproduced by 1D models that simulate root water uptake with solute exclusion. This observation may have an important impact on how to model pollutant mass transfer to groundwater at larger scales. Javaux, M., T. Schröder, J. Vanderborght, and H. Vereecken. 2008. Use of a three-dimensional detailed modeling approach for predicting root water uptake. Vadose Zone J. 7:1079-1088.doi: 10.2136/vzj2007.0115. Bechtold, M., S. Haber-Pohlmeier, J. Vanderborght, A. Pohlmeier, P.A. Ferre, and H. Vereecken. 2011. Near-surface solute redistribution during evaporation. Submitted to Geophys. Res. Lett

  12. Effect of mental fatigue caused by mobile 3D viewing on selective attention: an ERP study.

    PubMed

    Mun, Sungchul; Kim, Eun-Soo; Park, Min-Chul

    2014-12-01

    This study investigated behavioral responses to and auditory event-related potential (ERP) correlates of mental fatigue caused by mobile three-dimensional (3D) viewing. Twenty-six participants (14 women) performed a selective attention task in which they were asked to respond to the sounds presented at the attended side while ignoring sounds at the ignored side before and after mobile 3D viewing. Considering different individual susceptibilities to 3D, participants' subjective fatigue data were used to categorize them into two groups: fatigued and unfatigued. The amplitudes of d-ERP components were defined as differences in amplitudes between time-locked brain oscillations of the attended and ignored sounds, and these values were used to calculate the degree to which spatial selective attention was impaired by 3D mental fatigue. The fatigued group showed significantly longer response times after mobile 3D viewing compared to before the viewing. However, response accuracy did not significantly change between the two conditions, implying that the participants used a behavioral strategy to cope with their performance accuracy decrement by increasing their response times. No significant differences were observed for the unfatigued group. Analysis of covariance revealed group differences with significant and trends toward significant decreases in the d-P200 and d-late positive potential (LPP) amplitudes at the occipital electrodes of the fatigued and unfatigued groups. Our findings indicate that mentally fatigued participants did not effectively block out distractors in their information processing mechanism, providing support for the hypothesis that 3D mental fatigue impairs spatial selective attention and is characterized by changes in d-P200 and d-LPP amplitudes.

  13. 3-D Magnetotelluric studies of Pre-Cambrian basement beneath southern Alberta

    NASA Astrophysics Data System (ADS)

    Nieuwenhuis, G.; Unsworth, M.; Pana, D.; Craven, J.

    2012-12-01

    The Pre-Cambrian basement rocks beneath Alberta record the tectonic events that led to the assembly of Laurentia in the Proterozoic. Since these rocks are covered with younger sedimentary rocks, they must be investigated with geophysical methods. In the 1990s, these basement rocks were studied with a number of long-period magnetotelluric (MT) profiles collected by the Lithoprobe project. Dimensionality analysis of these data show that they appear to be two dimensional (2-D) in the period band 1-1000 s. However 2-D inversion models were unable to reproduce these MT data with a realistic resistivity model. The inversion models were very rough and characterized by many closely spaced conductors. Since the Lithoprobe data gave indications of 3-D resistivity structure, especially in the Archean Loverna block, additional MT data were collected by the University of Alberta from 2006-2010 using NIMS instruments. The goal was to develop an array that would constrain a fully 3-D model of crustal and upper mantle resistivity. The data at periods 1-10,000 s were inverted using a 3-D inversion algorithm. Comparisons between 2-D and 3-D inversions show that both models fit the measured MT data equally well. The 3-D model shows that the structure is dominated by an upper mantle conductor beneath the Loverna Block (the Loverna conductor). This conductor was previously imaged by the 2-D inversion of the Lithoprobe data. Our 3-D model shows that the Loverna conductor extends throughout the Archean Loverna block (part of the Hearne Domain) and is bounded to the south by a potential field anomaly known as the Vulcan Structure. Initial interpretations of the Vulcan Structure explained it as an intracontinental rift zone, while more recent studies show that it is more likely a north dipping subduction zone between two Archean blocks. This interpretation is supported by our 3-D resistivity model, which shows a good correlation between north dipping reflectors and the top of conductivity

  14. Supporting Distributed Team Working in 3D Virtual Worlds: A Case Study in Second Life

    ERIC Educational Resources Information Center

    Minocha, Shailey; Morse, David R.

    2010-01-01

    Purpose: The purpose of this paper is to report on a study into how a three-dimensional (3D) virtual world (Second Life) can facilitate socialisation and team working among students working on a team project at a distance. This models the situation in many commercial sectors where work is increasingly being conducted across time zones and between…

  15. Supporting Distributed Team Working in 3D Virtual Worlds: A Case Study in Second Life

    ERIC Educational Resources Information Center

    Minocha, Shailey; Morse, David R.

    2010-01-01

    Purpose: The purpose of this paper is to report on a study into how a three-dimensional (3D) virtual world (Second Life) can facilitate socialisation and team working among students working on a team project at a distance. This models the situation in many commercial sectors where work is increasingly being conducted across time zones and between…

  16. Segmented images and 3D images for studying the anatomical structures in MRIs

    NASA Astrophysics Data System (ADS)

    Lee, Yong Sook; Chung, Min Suk; Cho, Jae Hyun

    2004-05-01

    For identifying the pathological findings in MRIs, the anatomical structures in MRIs should be identified in advance. For studying the anatomical structures in MRIs, an education al tool that includes the horizontal, coronal, sagittal MRIs of entire body, corresponding segmented images, 3D images, and browsing software is necessary. Such an educational tool, however, is hard to obtain. Therefore, in this research, such an educational tool which helps medical students and doctors study the anatomical structures in MRIs was made as follows. A healthy, young Korean male adult with standard body shape was selected. Six hundred thirteen horizontal MRIs of the entire body were scanned and inputted to the personal computer. Sixty anatomical structures in the horizontal MRIs were segmented to make horizontal segmented images. Coronal, sagittal MRIs and coronal, sagittal segmented images were made. 3D images of anatomical structures in the segmented images were reconstructed by surface rendering method. Browsing software of the MRIs, segmented images, and 3D images was composed. This educational tool that includes horizontal, coronal, sagittal MRIs of entire body, corresponding segmented images, 3D images, and browsing software is expected to help medical students and doctors study anatomical structures in MRIs.

  17. Testing the effectiveness of 3D film for laboratory-based studies of emotion.

    PubMed

    Bride, Daniel L; Crowell, Sheila E; Baucom, Brian R; Kaufman, Erin A; O'Connor, Caitlin G; Skidmore, Chloe R; Yaptangco, Mona

    2014-01-01

    Research in psychology and affective neuroscience often relies on film as a standardized and reliable method for evoking emotion. However, clip validation is not undertaken regularly. This presents a challenge for research with adolescent and young adult samples who are exposed routinely to high-definition (HD) three-dimensional (3D) stimuli and may not respond to older, validated film clips. Studies with young people inform understanding of emotional development, dysregulated affect, and psychopathology, making it critical to assess whether technological advances improve the study of emotion. In the present study, we examine whether 3D film is more evocative than 2D using a tightly controlled within-subjects design. Participants (n  =  408) viewed clips during a concurrent psychophysiological assessment. Results indicate that both 2D and 3D technology are highly effective tools for emotion elicitation. However, 3D does not add incremental benefit over 2D, even when individual differences in anxiety, emotion dysregulation, and novelty seeking are considered.

  18. Testing the Effectiveness of 3D Film for Laboratory-Based Studies of Emotion

    PubMed Central

    Bride, Daniel L.; Crowell, Sheila E.; Baucom, Brian R.; Kaufman, Erin A.; O'Connor, Caitlin G.; Skidmore, Chloe R.; Yaptangco, Mona

    2014-01-01

    Research in psychology and affective neuroscience often relies on film as a standardized and reliable method for evoking emotion. However, clip validation is not undertaken regularly. This presents a challenge for research with adolescent and young adult samples who are exposed routinely to high-definition (HD) three-dimensional (3D) stimuli and may not respond to older, validated film clips. Studies with young people inform understanding of emotional development, dysregulated affect, and psychopathology, making it critical to assess whether technological advances improve the study of emotion. In the present study, we examine whether 3D film is more evocative than 2D using a tightly controlled within-subjects design. Participants (n  =  408) viewed clips during a concurrent psychophysiological assessment. Results indicate that both 2D and 3D technology are highly effective tools for emotion elicitation. However, 3D does not add incremental benefit over 2D, even when individual differences in anxiety, emotion dysregulation, and novelty seeking are considered. PMID:25170878

  19. Zig-Zag Thermal-Chemical 3-D Instabilities in the Mantle Wedge: Numerical Study

    NASA Astrophysics Data System (ADS)

    Zhu, G.; Gerya, T. V.; Arcay, D.; Yuen, D. A.

    2008-12-01

    To understand the plume initiation and propagation it is important to understand whether small-scale convection is occurring under the back-arc in the Low Viscosity Wedge(LVW) and its implication on the island-arc volcanism. Honda et al. [Honda and Saito, 2003; Honda, et al., 2007]) already deployed small- scale convection in the Low Viscosity Wedge (LVW) above a subducting slab with kinematically imposed velocity boundary condition. They have suggested that a roll (finger)-like pattern of hot and cold anomalies emerges in the mantle wedge above the subducting slab. Here, we perform three-dimensional coupled petrological-thermomechanical numerical simulations of intraoceanic one-sided subduction with spontaneously bending retreating slab characterized by weak hydrated upper interface by using multigrid approach combined with characteristics-based marker-in-cell method with conservative finite difference schemes[Gerya and Yuen, 2003a], to investigate the 3D instabilities above the slab and lateral variation along the arc. Our results show that water released from subducting slab through dehydration reactions may lower the viscosity of the mantle. It allows the existence of wave-like small-scale convection in the LVW, which is shown as roll-like structure in 2D petrological-thermomechanical numerical experiments [Gorczyk et al., 2006] using in-situ rock properties computed on the basis of Gibbs free energy minimization. However, in our 3D cases, the rolls aligning with the arc mainly occur earlier , while zig-zag small-scale thermal-chemical instabilities may episodically form above the slab at later stages, which is different from the aligning finger-like pattern in purely thermal models (Honda et al,2003;2007). Also in contrast to thermal convection chemically buoyant hydrated plumes rising from the slab in our models are actually colder then the mantle wedge [Gerya and Yuen 2003b] which also strongly modify both the convection pattern and the seismic structure in

  20. 3D SEM for surface topography quantification - a case study on dental surfaces

    NASA Astrophysics Data System (ADS)

    Glon, F.; Flys, O.; Lööf, P.-J.; Rosén, B.-G.

    2014-03-01

    3D analysis of surface topography is becoming a more used tool for industry and research. New ISO standards are being launched to assist in quantifying engineering surfaces. The traditional optical measuring instrumentation used for 3D surface characterization has been optical interferometers and confocal based instrumentation. However, the resolution here is limited in the lateral dimension to the wavelength of visible light to about 500 nm. The great advantage using the SEM for topography measurements is the high flexibility to zoom from low magnifications and locating interesting areas to high magnification of down to nanometer large surface features within seconds. This paper presents surface characterization of dental implant micro topography. 3D topography data was created from SEM images using commercial photogrammetric software. A coherence scanning interferometer was used for reference measurements to compare with the 3D SEM measurements on relocated areas. As a result of this study, measurements emphasizes that the correlation between the accepted CSI measurements and the new technology represented by photogrammetry based on SEM images for many areal characterization parameters are around or less than 20%. The importance of selecting sampling and parameter sensitivity to varying sampling is high-lighted. Future work includes a broader study of limitations of the photogrammetry technique on certified micro-geometries and more application surfaces at different scales.

  1. System-crosstalk effect on stereopsis human factor study for 3D displays

    NASA Astrophysics Data System (ADS)

    Huang, Kuo-Chung; Yang, Jinn-Cherng; Wu, Chou-Lin; Lee, Kuen; Hwang, Sheue-Ling

    2010-02-01

    The ghost image induced by System-Crosstalk (SCT) of 3D display, due to optical hardware imperfections, is the major factor to jeopardize stereopsis. The system crosstalk can be measured by optical measuring instrument and describes the optical leakage from the neighboring viewing zones. The amount of crosstalk reduces the ability of the viewer to fuse the stereo-images into 3D images. The Viewer-Crosstalk (VCT), combined with hardware and content issues, is an overall evaluation of the ghost image and can be easily interpreted based on the principle of binocular 3D display. The examination of different SCT values was carried out with a seven-grade subjective evaluation test. In our previous study, it was shown that many other factors, such as contrast ratio, disparity and monocular cues of the images, play important roles in the stereopsis. In this paper, we study the factors of stereo-images with different crosstalk levels that may affect stereopsis. For simulate the interference between stereo-images, digital image processing are employed to assign different levels of crosstalk to each other at properly specified disparity between images. Results of this research can provide valuable reference to the content makers and for the optimized design of 3D displays with minimum System Crosstalk.

  2. 3D Visualization Types in Multimedia Applications for Science Learning: A Case Study for 8th Grade Students in Greece

    ERIC Educational Resources Information Center

    Korakakis, G.; Pavlatou, E. A.; Palyvos, J. A.; Spyrellis, N.

    2009-01-01

    This research aims to determine whether the use of specific types of visualization (3D illustration, 3D animation, and interactive 3D animation) combined with narration and text, contributes to the learning process of 13- and 14- years-old students in science courses. The study was carried out with 212 8th grade students in Greece. This…

  3. 3D Visualization Types in Multimedia Applications for Science Learning: A Case Study for 8th Grade Students in Greece

    ERIC Educational Resources Information Center

    Korakakis, G.; Pavlatou, E. A.; Palyvos, J. A.; Spyrellis, N.

    2009-01-01

    This research aims to determine whether the use of specific types of visualization (3D illustration, 3D animation, and interactive 3D animation) combined with narration and text, contributes to the learning process of 13- and 14- years-old students in science courses. The study was carried out with 212 8th grade students in Greece. This…

  4. 3D Gravity Inversion of Northern Sinai Peninsula: A Case Study

    NASA Astrophysics Data System (ADS)

    Khalil, Mohamed A.; Santos, Fernando M.

    2014-07-01

    The Sinai Peninsula has attracted the attention of many geological and geophysical studies as it is influenced and bounded by major tectonic events. Those are (1) the Mesozoic to Early Cenozoic tectonically active opening of the Tethys, (2) the Late Cretaceous to Early Tertiary (Laramide) Syrian arc system, due to closing of the Tethys (3) the Oligo-Miocene Gulf of Suez rifted basin, and (4) the Late Miocene to Recent transform Dead Sea-Gulf of Aqaba rift. Additionally, the shear zones inside Sinai such as the Ragabet El-Naam and Minsherah-Abu Kandu Shear Zones. Each of these major tectonic events has affected dramatically the structure evolution of the northern Sinai area. The present paper estimates the 3D density contrast model using the gravity data of northern Sinai. The estimated 3D density contrast model elucidated the peculiarities of the main structural elements in the region. The estimated 3D density contrast model showed the high and low gravity anomalies that form the main mountains and main valleys in northern Sinai. The estimated low density zones are in agreement with the inferred faults resulting from the first horizontal derivative. Comparing the 3D model with the tectonic history of the region and the results of the first horizontal derivative and least square separation increased the reliability of the model.

  5. Validity Study of Vertebral Rotation Measurement Using 3-D Ultrasound in Adolescent Idiopathic Scoliosis.

    PubMed

    Wang, Qian; Li, Meng; Lou, Edmond H M; Chu, Winnie C W; Lam, Tsz-Ping; Cheng, Jack C Y; Wong, Man-Sang

    2016-07-01

    This study aimed to assess the validity of 3-D ultrasound measurements on the vertebral rotation of adolescent idiopathic scoliosis (AIS) under clinical settings. Thirty curves (mean Cobb angle: 21.7° ± 15.9°) from 16 patients with AIS were recruited. 3-D ultrasound and magnetic resonance imaging scans were performed at the supine position. Each of the two raters measured the apical vertebral rotation using the center of laminae (COL) method in the 3-D ultrasound images and the Aaro-Dahlborn method in the magnetic resonance images. The intra- and inter-reliability of the COL method was demonstrated by the intra-class correlation coefficient (ICC) (both [2, K] >0.9, p < 0.05). The COL method showed no significant difference (p < 0.05) compared with the Aaro-Dahlborn method. Furthermore, the agreement between these two methods was demonstrated by the Bland-Altman method, and high correlation was found (r > 0.9, p < 0.05). These results validated the proposed 3-D ultrasound method in the measurements of vertebral rotation in the patients with AIS.

  6. 3D visualization of the scoliotic spine: longitudinal studies, data acquisition, and radiation dosage constraints

    NASA Astrophysics Data System (ADS)

    Kalvin, Alan D.; Adler, Roy L.; Margulies, Joseph Y.; Tresser, Charles P.; Wu, Chai W.

    1999-05-01

    Decision making in the treatment of scoliosis is typically based on longitudinal studies that involve the imaging and visualization the progressive degeneration of a patient's spine over a period of years. Some patients will need surgery if their spinal deformation exceeds a certain degree of severity. Currently, surgeons rely on 2D measurements, obtained from x-rays, to quantify spinal deformation. Clearly working only with 2D measurements seriously limits the surgeon's ability to infer 3D spinal pathology. Standard CT scanning is not a practical solution for obtaining 3D spinal measurements of scoliotic patients. Because it would expose the patient to a prohibitively high dose of radiation. We have developed 2 new CT-based methods of 3D spinal visualization that produce 3D models of the spine by integrating a very small number of axial CT slices with data obtained from CT scout data. In the first method the scout data are converted to sinogram data, and then processed by a tomographic image reconstruction algorithm. In the second method, the vertebral boundaries are detected in the scout data, and these edges are then used as linear constraints to determine 2D convex hulls of the vertebrae.

  7. A 3D tension bioreactor platform to study the interplay between ECM stiffness and tumor phenotype.

    PubMed

    Cassereau, Luke; Miroshnikova, Yekaterina A; Ou, Guanqing; Lakins, Johnathon; Weaver, Valerie M

    2015-01-10

    Extracellular matrix (ECM) structure, composition, and stiffness have profound effects on tissue development and pathologies such as cardiovascular disease and cancer. Accordingly, a variety of synthetic hydrogel systems have been designed to study the impact of ECM composition, density, mechanics, and topography on cell and tissue phenotype. However, these synthetic systems fail to accurately recapitulate the biological properties and structure of the native tissue ECM. Natural three dimensional (3D) ECM hydrogels, such as collagen or hyaluronic acid, feature many of the chemical and physical properties of tissue, yet, these systems have limitations including the inability to independently control biophysical properties such as stiffness and pore size. Here, we present a 3D tension bioreactor system that permits precise mechanical tuning of collagen hydrogel stiffness, while maintaining consistent composition and pore size. We achieve this by mechanically loading collagen hydrogels covalently-conjugated to a polydimethylsiloxane (PDMS) membrane to induce hydrogel stiffening. We validated the biological application of this system with oncogenically transformed mammary epithelial cell organoids embedded in a 3D collagen I hydrogel, either uniformly stiffened or calibrated to create a gradient of ECM stiffening, to visually demonstrate the impact of ECM stiffening on transformation and tumor cell invasion. As such, this bioreactor presents the first tunable 3D natural hydrogel system that is capable of independently assessing the role of ECM stiffness on tissue phenotype.

  8. Preliminary study of the dosimetric characteristics of 3D-printed materials with megavoltage photons

    NASA Astrophysics Data System (ADS)

    Jeong, Seonghoon; Yoon, Myonggeun; Chung, Weon Kuu; Kim, Dong Wook

    2015-07-01

    These days, 3D-printers are on the rise in various fields including radiation therapy. This preliminary study aimed to estimate the dose characteristics of 3D-printer materials that could be used as compensators or immobilizers in radiation treatment. The cubes with length of 5 cm and different densities of 50%, 75% and 100% were printed by using a 3D-printer. Planning CT scans of the cubes were performed by using a CT simulator (Brilliance CT, Philips Medical System, Netherlands). Dose distributions behind the cube were calculated after a 6 MV photon beam had passed through the cube. The dose responses for the 3D-printed cube, air and water were measured by using EBT3 film and a 2D array detector. When the results of air case were normalized to 100, the dose calculated by the TPS and the measured doses to 50% and 75% cube were of the 96 ~ 99. The measured and the calculated doses to water and to 100% of the cube were 82 ~ 84. The HU values for the 50%, 75% and 100% density cases were -910, -860 and -10, respectively. The dose characteristics of the 50% and the 75% products were similar to that of air while the 100% product seemed to be similar to that of water. This information will provide guidelines for making an immobilization tool that can play the role of a compensator and for making a real human phantom that can exactly describe the inside of the human body. This study was necessary for Poly Lactic Acid (PLA) based 3D-printer users who are planning to make something related to radiation therapy.

  9. Studying Host-Pathogen Interactions In 3-D: Organotypic Models For Infectious Disease And Drug Development

    NASA Technical Reports Server (NTRS)

    Nickerson, Cheryl A.; Richter, Emily G.; Ott, C. Mark

    2006-01-01

    Representative, reproducible and high-throughput models of human cells and tissues are critical for a meaningful evaluation of host-pathogen interactions and are an essential component of the research developmental pipeline. The most informative infection models - animals, organ explants and human trials - are not suited for extensive evaluation of pathogenesis mechanisms and screening of candidate drugs. At the other extreme, more cost effective and accessible infection models such as conventional cell culture and static co-culture may not capture physiological and three-dimensional aspects of tissue biology that are important in assessing pathogenesis, and effectiveness and cytotoxicity of therapeutics. Our lab has used innovative bioengineering technology to establish biologically meaningful 3-D models of human tissues that recapitulate many aspects of the differentiated structure and function of the parental tissue in vivo, and we have applied these models to study infectious disease. We have established a variety of different 3-D models that are currently being used in infection studies - including small intestine, colon, lung, placenta, bladder, periodontal ligament, and neuronal models. Published work from our lab has shown that our 3-D models respond to infection with bacterial and viral pathogens in ways that reflect the infection process in vivo. By virtue of their physiological relevance, 3-D cell cultures may also hold significant potential as models to provide insight into the neuropathogenesis of HIV infection. Furthermore, the experimental flexibility, reproducibility, cost-efficiency, and high throughput platform afforded by these 3-D models may have important implications for the design and development of drugs with which to effectively treat neurological complications of HIV infection.

  10. Laboratory Study of Magnetic Reconnection in 3D Geometry Relevant to Magnetopause and Magnetotail

    NASA Astrophysics Data System (ADS)

    Ren, Y.; Lu, Q.; Ji, H.; Mao, A.; Wang, X.; E, P.; Wang, Z.; Xiao, Q.; Ding, W.; Zheng, J.

    2015-12-01

    Laboratory Study of Magnetic Reconnection in 3D Geometry Relevant to Magnetopause and Magnetotail Y. Ren1,2, Quaming Lu3, Hantao Ji1,2, Aohua Mao1, Xiaogang Wang1, Peng E1, Zhibin Wang1, Qingmei Xiao1, Weixing Ding4, Jinxing Zheng51 Harbin Institute of Technology, Harbin, China2 Princeton Plasma Physics Laboratory, Princeton University, Princeton, NJ 08543 3University of Science and Technology of China, Hefei, China 4University of California at Los Angeles, Los Angeles, CA, 90095 5ASIPP, Hefei, China A new magnetic reconnection experiment, Harbin reconnection eXperiment (HRX), is currently being designed as a key part of Space Plasma Environment Research Facility (SPERF) at Harbin Institute of Technology in Harbin, China. HRX aims to provide a unique experimental platform for studying reconnections in 3D geometry relevant to magnetopause and magnetotail to address: the role of electron and ion-scale dynamics in the current sheet; particle and energy transfer from magnetosheath to magnetosphere; particle energization/heating mechanisms during magnetic reconnection; 3D effects in fast reconnection, e.g. the role of 3D magnetic null point. HRX employs a unique set of coils to generate the required 3D magnetic geometry and provides a wide range of plasma parameters. Here, important motivating scientific problems are reviewed and the physics design of HRX is presented, including plasma parameters determined from Vlasov scaling law, reconnection scenarios explored using vacuum magnetic field calculations and numerical simulations of HRX using hybrid and MHD codes. Plasma diagnostics plan and engineering design of important coils will also be briefly presented.

  11. Adaptive clutter rejection for 3D color Doppler imaging: preliminary clinical study.

    PubMed

    Yoo, Yang Mo; Sikdar, Siddhartha; Karadayi, Kerem; Kolokythas, Orpheus; Kim, Yongmin

    2008-08-01

    In three-dimensional (3D) ultrasound color Doppler imaging (CDI), effective rejection of flash artifacts caused by tissue motion (clutter) is important for improving sensitivity in visualizing blood flow in vessels. Since clutter characteristics can vary significantly during volume acquisition, a clutter rejection technique that can adapt to the underlying clutter conditions is desirable for 3D CDI. We have previously developed an adaptive clutter rejection (ACR) method, in which an optimum filter is dynamically selected from a set of predesigned clutter filters based on the measured clutter characteristics. In this article, we evaluated the ACR method with 3D in vivo data acquired from 37 kidney transplant patients clinically indicated for a duplex ultrasound examination. We compared ACR against a conventional clutter rejection method, down-mixing (DM), using a commonly-used flow signal-to-clutter ratio (SCR) and a new metric called fractional residual clutter area (FRCA). The ACR method was more effective in removing the flash artifacts while providing higher sensitivity in detecting blood flow in the arcuate arteries and veins in the parenchyma of transplanted kidneys. ACR provided 3.4 dB improvement in SCR over the DM method (11.4 +/- 1.6 dB versus 8.0 +/- 2.0 dB, p < 0.001) and had lower average FRCA values compared with the DM method (0.006 +/- 0.003 versus 0.036 +/- 0.022, p < 0.001) for all study subjects. These results indicate that the new ACR method is useful for removing nonstationary tissue motion while improving the image quality for visualizing 3D vascular structure in 3D CDI.

  12. 3D printed polyurethane prosthesis for partial tracheal reconstruction: a pilot animal study.

    PubMed

    Jung, Soo Yeon; Lee, Sang Jin; Kim, Ha Yeong; Park, Hae Sang; Wang, Zhan; Kim, Hyun Jun; Yoo, James J; Chung, Sung Min; Kim, Han Su

    2016-10-27

    A ready-made, acellular patch-type prosthesis is desirable in repairing partial tracheal defects in the clinical setting. However, many of these prostheses may not show proper biological integration and biomechanical function when they are transplanted. In this study, we developed a novel 3D printed polyurethane (PU) tracheal scaffold with micro-scale architecture to allow host tissue infiltration and adequate biomechanical properties to withstand physiological tracheal condition. A half-pipe shaped PU scaffold (1.8 cm of height, 0.18 cm thickness, and 2 cm of diameter) was fabricated by 3D printing of PU 200 μm PU beam. The 3D printed tracheal scaffolds consisted of a porous inner microstructure with 200 × 200 × 200 μm(3) sized pores and a non-porous outer layer. The mechanical properties of the scaffolds were 3.21 ± 1.02 MPa of ultimate tensile strength, 2.81 ± 0.58 MPa of Young's modulus, and 725% ± 41% of elongation at break. To examine the function of the 3D printed tracheal scaffolds in vivo, the scaffolds were implanted into 1.0 × 0.7 cm(2) sized anterior tracheal defect of rabbits. After implantation, bronchoscopic examinations revealed that the implanted tracheal scaffolds were patent for a 16 week-period. Histologic findings showed that re-epithelialization after 4 weeks of implantation and ciliated respiratory epithelium with ciliary beating after 8 weeks of implantation were observed at the lumen of the implanted tracheal scaffolds. The ingrowth of the connective tissue into the scaffolds was observed at 4 weeks after implantation. The biomechanical properties of the implanted tracheal scaffolds were continually maintained for 16 week-period. The results demonstrated that 3D printed tracheal scaffold could provide an alternative solution as a therapeutic treatment for partial tracheal defects.

  13. 3D Echo Pilot Study of Geometric Left Ventricular Changes after Acute Myocardial Infarction

    PubMed Central

    Vieira, Marcelo Luiz Campos; Oliveira, Wercules Antonio; Cordovil, Adriana; Rodrigues, Ana Clara Tude; Mônaco, Cláudia Gianini; Afonso, Tânia; Lira Filho, Edgar Bezerra; Perin, Marco; Fischer, Cláudio Henrique; Morhy, Samira Saady

    2013-01-01

    Background Left ventricular remodeling (LVR) after AMI characterizes a factor of poor prognosis. There is little information in the literature on the LVR analyzed with three-dimensional echocardiography (3D ECHO). Objective To analyze, with 3D ECHO, the geometric and volumetric modifications of the left ventricle (VE) six months after AMI in patients subjected to percutaneous primary treatment. Methods Prospective study with 3D ECHO of 21 subjects (16 men, 56 ± 12 years-old), affected by AMI with ST segment elevation. The morphological and functional analysis (LV) with 3D ECHO (volumes, LVEF, 3D sphericity index) was carried out up to seven days and six months after the AMI. The LVR was considered for increase > 15% of the end diastolic volume of the LV (LVEDV) six months after the AMI, compared to the LVEDV up to seven days from the event. Results Eight (38%) patients have presented LVR. Echocardiographic measurements (n = 21 patients): I- up to seven days after the AMI: 1- LVEDV: 92.3 ± 22.3 mL; 2- LVEF: 0.51 ± 0.01; 3- sphericity index: 0.38 ± 0.05; II- after six months: 1- LVEDV: 107.3 ± 26.8 mL; 2- LVEF: 0.59 ± 0.01; 3- sphericity index: 0.31 ± 0.05. Correlation coefficient (r) between the sphericity index up to seven days after the AMI and the LVEDV at six months (n = 8) after the AMI: r: 0.74, p = 0.0007; (r) between the sphericity index six months after the AMI and the LVEDV at six months after the AMI: r: 0.85, p < 0.0001. Conclusion In this series, LVR has been observed in 38% of the patients six months after the AMI. The three-dimensional sphericity index has been associated to the occurrence of LVR. PMID:23740401

  14. D Recording for 2d Delivering - the Employment of 3d Models for Studies and Analyses -

    NASA Astrophysics Data System (ADS)

    Rizzi, A.; Baratti, G.; Jiménez, B.; Girardi, S.; Remondino, F.

    2011-09-01

    In the last years, thanks to the advances of surveying sensors and techniques, many heritage sites could be accurately replicated in digital form with very detailed and impressive results. The actual limits are mainly related to hardware capabilities, computation time and low performance of personal computer. Often, the produced models are not visible on a normal computer and the only solution to easily visualized them is offline using rendered videos. This kind of 3D representations is useful for digital conservation, divulgation purposes or virtual tourism where people can visit places otherwise closed for preservation or security reasons. But many more potentialities and possible applications are available using a 3D model. The problem is the ability to handle 3D data as without adequate knowledge this information is reduced to standard 2D data. This article presents some surveying and 3D modeling experiences within the APSAT project ("Ambiente e Paesaggi dei Siti d'Altura Trentini", i.e. Environment and Landscapes of Upland Sites in Trentino). APSAT is a multidisciplinary project funded by the Autonomous Province of Trento (Italy) with the aim documenting, surveying, studying, analysing and preserving mountainous and hill-top heritage sites located in the region. The project focuses on theoretical, methodological and technological aspects of the archaeological investigation of mountain landscape, considered as the product of sequences of settlements, parcelling-outs, communication networks, resources, and symbolic places. The mountain environment preserves better than others the traces of hunting and gathering, breeding, agricultural, metallurgical, symbolic activities characterised by different lengths and environmental impacts, from Prehistory to the Modern Period. Therefore the correct surveying and documentation of this heritage sites and material is very important. Within the project, the 3DOM unit of FBK is delivering all the surveying and 3D material to

  15. 3D Propagation and Geoacoustic Inversion Studies in the Mid-Atlantic Bight

    DTIC Science & Technology

    2016-06-07

    3D Propagation and Geoacoustic Inversion Studies in the Mid-Atlantic Bight Kevin B. Smith Code PH/Sk, Department of Physics Naval Postgraduate...properties and measured transmission loss. Results from this analysis will be considered in the context of geoacoustic inversions . OBJECTIVES To...bathymetric features and ocean fronts near the shelf break of the mid-Atlantic Bight, and use of various data for geoacoutic inversion studies. The results

  16. In vitro systems to study nephropharmacology: 2D versus 3D models.

    PubMed

    Sánchez-Romero, Natalia; Schophuizen, Carolien M S; Giménez, Ignacio; Masereeuw, Rosalinde

    2016-11-05

    The conventional 2-dimensional (2D) cell culture is an invaluable tool in, amongst others, cell biology and experimental pharmacology. However, cells cultured in 2D, on the top of stiff plastic plates lose their phenotypical characteristics and fail in recreating the physiological environment found in vivo. This is a fundamental requirement when the goal of the study is to get a rigorous predictive response of human drug action and safety. Recent approaches in the field of renal cell biology are focused on the generation of 3D cell culture models due to the more bona fide features that they exhibit and the fact that they are more closely related to the observed physiological conditions, and better predict in vivo drug handling. In this review, we describe the currently available 3D in vitro models of the kidney, and some future directions for studying renal drug handling, disease modeling and kidney regeneration.

  17. Reconstruction of quadratic curves in 3D using two or more perspective views: simulation studies

    NASA Astrophysics Data System (ADS)

    Kumar, Sanjeev; Sukavanam, N.; Balasubramanian, R.

    2006-01-01

    The shapes of many natural and man-made objects have planar and curvilinear surfaces. The images of such curves usually do not have sufficient distinctive features to apply conventional feature-based reconstruction algorithms. In this paper, we describe a method of reconstruction of a quadratic curve in 3-D space as an intersection of two cones containing the respective projected curve images. The correspondence between this pair of projections of the curve is assumed to be established in this work. Using least-square curve fitting, the parameters of a curve in 2-D space are found. From this we are reconstructing the 3-D quadratic curve. Relevant mathematical formulations and analytical solutions for obtaining the equation of reconstructed curve are given. The result of the described reconstruction methodology are studied by simulation studies. This reconstruction methodology is applicable to LBW decision in cricket, path of the missile, Robotic Vision, path lanning etc.

  18. [Study of 3D-pcASL in differentiation of acute cerebral infarction and acute encephalitis].

    PubMed

    Mao, Chuanwan; Fu, Yuchuan; Ye, Xinjian; Wu, Aiqin; Yan, Zhihan

    2015-06-16

    To investigate the value of three-dimentional pseudo-continuous arterial spin labeling (ASL) perfusion imaging in differentiating acute cerebral infarction from acute encephalitis. From September 2013 to September 2014, 42 patients with actue stroke onset and 20 healthy volunteers underwent conventional brain MRI DWI and 3D-ASL Perfusion Imaging in our hospital. Only 20 patients whose lesions located in the middle cerebral artery (MCA) territory were enrolled in this study. Of these cases, 12 cases were diagnosed with acute cerebral infarction, 8 were diagnosed with encephalitis. First, we analyzed the imaging features of the 20 patients and 20 volunteers. Then, CBF values of the lesions in the 20 patients and the gray matter of MCA territory in the 20 volunteers were measured on 3D-pcASL images. Third, the difference of mean CBF values between patients and volunteers were analyzed. Out of 20 study group, 19 patients whose lesions presented high signal intensity on DWI images, 12 cases were acute cerebral infarction and 8 were encephalitis. All the lesions of 20 cases showed abnormal perfusion on 3D-pcASL images. 3D-pcASL has good consistency with DWI in diagnostic capabilities (χ² = 0.565, P = 0.01). On 3D-pcASL, 11 acute cerebral infarction patients presented perfusion defects or low perfusion, 1 acute cerebral infarction patients showed high perfusion, 8 encephalitis patients showed inhomogeneous perfusion. The mean value of CBF was (17 ± 6) ml · min⁻¹ · 100 g⁻¹ in 12 acute cerebral infarction patients, (136 ± 69) ml · min⁻¹ · 100 g⁻¹ in 8 encephalitis patients and (68 ± 12) ml · min⁻¹ · 100 g⁻¹ three in 20 healthy volunteers. The difference in mean value of CBF among the three groups was statistically significant (P < 0.01). Acute cerebral infarction often shows low perfusion and acute encephalitis shows high perfusion on 3D-pcASL images, which has a higher application value in diagnosis and differentiation of acute cerebral

  19. 3D Morphometric and posture study of felid scapulae using statistical shape modelling.

    PubMed

    Zhang, Kai Yu; Wiktorowicz-Conroy, Alexis; Hutchinson, John R; Doube, Michael; Klosowski, Michal; Shefelbine, Sandra J; Bull, Anthony M J

    2012-01-01

    We present a three dimensional (3D) morphometric modelling study of the scapulae of Felidae, with a focus on the correlations between forelimb postures and extracted scapular shape variations. Our shape modelling results indicate that the scapular infraspinous fossa becomes larger and relatively broader along the craniocaudal axis in larger felids. We infer that this enlargement of the scapular fossa may be a size-related specialization for postural support of the shoulder joint.

  20. 3D Morphometric and Posture Study of Felid Scapulae Using Statistical Shape Modelling

    PubMed Central

    Zhang, Kai Yu; Wiktorowicz-Conroy, Alexis; Hutchinson, John R.; Doube, Michael; Klosowski, Michal; Shefelbine, Sandra J.; Bull, Anthony M. J.

    2012-01-01

    We present a three dimensional (3D) morphometric modelling study of the scapulae of Felidae, with a focus on the correlations between forelimb postures and extracted scapular shape variations. Our shape modelling results indicate that the scapular infraspinous fossa becomes larger and relatively broader along the craniocaudal axis in larger felids. We infer that this enlargement of the scapular fossa may be a size-related specialization for postural support of the shoulder joint. PMID:22509335

  1. Two Eyes, 3D: A New Project to Study Stereoscopy in Astronomy Education

    NASA Astrophysics Data System (ADS)

    Price, Aaron; SubbaRao, M.; Wyatt, R.

    2012-01-01

    "Two Eyes, 3D" is a 3-year NSF funded research project to study the educational impacts of using stereoscopic representations in informal settings. The project funds two experimental studies. The first is focused on how children perceive various spatial qualities of scientific objects displayed in static 2D and 3D formats. The second is focused on how adults perceive various spatial qualities of scientific objects and processes displayed in 2D and 3D movie formats. As part of the project, two brief high-definition films about variable stars will be developed. Both studies will be mixed-method and look at prior spatial ability and other demographic variables as covariates. The project is run by the American Association of Variable Star Observers, Boston Museum of Science and the Adler Planetarium and Astronomy Museum with consulting from the California Academy of Sciences. Early pilot results will be presented. All films will be released into the public domain, as will the assessment software designed to run on tablet computers (iOS or Android).

  2. The Mouse Limb Anatomy Atlas: an interactive 3D tool for studying embryonic limb patterning.

    PubMed

    Delaurier, April; Burton, Nicholas; Bennett, Michael; Baldock, Richard; Davidson, Duncan; Mohun, Timothy J; Logan, Malcolm Po

    2008-09-15

    The developing mouse limb is widely used as a model system for studying tissue patterning. Despite this, few references are available that can be used for the correct identification of developing limb structures, such as muscles and tendons. Existing textual references consist of two-dimensional (2D) illustrations of the adult rat or mouse limb that can be difficult to apply when attempting to describe the complex three-dimensional (3D) relationship between tissues. To improve the resources available in the mouse model, we have generated a free, web-based, interactive reference of limb muscle, tendon, and skeletal structures at embryonic day (E) 14.5 http://www.nimr.mrc.ac.uk/3dlimb/. The Atlas was generated using mouse forelimb and hindlimb specimens stained using immunohistochemistry to detect muscle and tendon. Limbs were scanned using Optical Projection Tomography (OPT), reconstructed to make 3D models and annotated using computer-assisted segmentation tools in Amira 3D Visualisation software. The annotated dataset is visualised using Java, JAtlasView software. Users click on the names of structures and view their shape, position and relationship with other structures within the 3D model and also in 2D virtual sections. The Mouse Limb Anatomy Atlas provides a novel and valuable tool for researchers studying limb development and can be applied to a range of research areas, including the identification of abnormal limb patterning in transgenic lines and studies of models of congenital limb abnormalities. By using the Atlas for "virtual" dissection, this resource offers an alternative to animal dissection. The techniques we have developed and employed are also applicable to many other model systems and anatomical structures.

  3. The Mouse Limb Anatomy Atlas: An interactive 3D tool for studying embryonic limb patterning

    PubMed Central

    DeLaurier, April; Burton, Nicholas; Bennett, Michael; Baldock, Richard; Davidson, Duncan; Mohun, Timothy J; Logan, Malcolm PO

    2008-01-01

    Background The developing mouse limb is widely used as a model system for studying tissue patterning. Despite this, few references are available that can be used for the correct identification of developing limb structures, such as muscles and tendons. Existing textual references consist of two-dimensional (2D) illustrations of the adult rat or mouse limb that can be difficult to apply when attempting to describe the complex three-dimensional (3D) relationship between tissues. Results To improve the resources available in the mouse model, we have generated a free, web-based, interactive reference of limb muscle, tendon, and skeletal structures at embryonic day (E) 14.5 . The Atlas was generated using mouse forelimb and hindlimb specimens stained using immunohistochemistry to detect muscle and tendon. Limbs were scanned using Optical Projection Tomography (OPT), reconstructed to make 3D models and annotated using computer-assisted segmentation tools in Amira 3D Visualisation software. The annotated dataset is visualised using Java, JAtlasView software. Users click on the names of structures and view their shape, position and relationship with other structures within the 3D model and also in 2D virtual sections. Conclusion The Mouse Limb Anatomy Atlas provides a novel and valuable tool for researchers studying limb development and can be applied to a range of research areas, including the identification of abnormal limb patterning in transgenic lines and studies of models of congenital limb abnormalities. By using the Atlas for "virtual" dissection, this resource offers an alternative to animal dissection. The techniques we have developed and employed are also applicable to many other model systems and anatomical structures. PMID:18793391

  4. A study of the 3D radiative transfer effect in cloudy atmospheres

    NASA Astrophysics Data System (ADS)

    Okata, M.; Teruyuki, N.; Suzuki, K.

    2015-12-01

    Evaluation of the effect of clouds in the atmosphere is a significant problem in the Earth's radiation budget study with their large uncertainties of microphysics and the optical properties. In this situation, we still need more investigations of 3D cloud radiative transer problems using not only models but also satellite observational data.For this purpose, we have developed a 3D-Monte-Carlo radiative transfer code that is implemented with various functions compatible with the OpenCLASTR R-Star radiation code for radiance and flux computation, i.e. forward and backward tracing routines, non-linear k-distribution parameterization (Sekiguchi and Nakajima, 2008) for broad band solar flux calculation, and DM-method for flux and TMS-method for upward radiance (Nakajima and Tnaka 1998). We also developed a Minimum cloud Information Deviation Profiling Method (MIDPM) as a method for a construction of 3D cloud field with MODIS/AQUA and CPR/CloudSat data. We then selected a best-matched radar reflectivity factor profile from the library for each of off-nadir pixels of MODIS where CPR profile is not available, by minimizing the deviation between library MODIS parameters and those at the pixel. In this study, we have used three cloud microphysical parameters as key parameters for the MIDPM, i.e. effective particle radius, cloud optical thickness and top of cloud temperature, and estimated 3D cloud radiation budget. We examined the discrepancies between satellite observed and mode-simulated radiances and three cloud microphysical parameter's pattern for studying the effects of cloud optical and microphysical properties on the radiation budget of the cloud-laden atmospheres.

  5. A porous 3D cell culture micro device for cell migration study.

    PubMed

    Ma, Liang; Zhou, Changchun; Lin, Biaoyang; Li, Wei

    2010-08-01

    Cell migration under chemoattractant is an important biological step in cancer metastasis that causes the spread of malignant tumor cells. Porous polymeric materials are widely used to mimic the extracellular matrix (ECM) environment for applications such as three dimensional (3D) cell culturing and tissue engineering. In this paper we report a novel 3D cell culture device based on porous polymeric material to study cancer migration. We fabricated a porous channel on a polymeric chip using a selective ultrasonic foaming method. We demonstrate that a chemical concentration gradient could be established through the porous channel due to the slow diffusion process. We show that significant cell migration could be observed through the porous channel within 1-2 weeks of cell culturing when metastatic M4A4-GFP breast cancer cells were induced by 20% fetal bovine serum (FBS).We also developed a mathematical model to evaluate the diffusivity and concentration gradient through the fabricated porous structure.

  6. 3D Ultrasound Guidance of Autonomous Robotic Breast Biopsy: Feasibility Study

    PubMed Central

    Liang, Kaicheng; Rogers, Albert J.; Light, Edward D.; von Allmen, Daniel; Smith, Stephen W.

    2009-01-01

    Feasibility studies of autonomous robot biopsies in tissue have been conducted using real time 3D ultrasound combined with simple thresholding algorithms. The robot first autonomously processed 3D image volumes received from the ultrasound scanner to locate a metal rod target embedded in turkey breast tissue simulating a calcification, and in a separate experiment, the center of a water-filled void in the breast tissue simulating a cyst. In both experiments the robot then directed a needle to the desired target, with no user input required. Separate needle-touch experiments performed by the image-guided robot in a water tank yielded an rms error of 1.15 mm. PMID:19900753

  7. Study on 3D Flow Structures and Bed Deformations in Curved Open Channels

    NASA Astrophysics Data System (ADS)

    Shimada, Ryuichi; Kimura, Ichiro; Shimizu, Yasuyuki

    Bed deformations in river bends are crucial for river management. However, due to the complex flow structures, the prediction of bed deformations in river bends is difficult. In this study, flow structures and bed deformations in curved open channels are discussed through laboratory experiments and 3D numerical simulations. In the 3D model, RANS approach was adopted. The numerical results were compared with experimental data performed by Hinokidani (1998). It is indicated that the fundamental properties of both flow and bed deformation can be captured well by present computations. In addition, numerical and laboratory experiments were conducted for verifying the difference of bed deformation patterns depending on different channel and hydraulic conditions. The experimental results showed that bed deformation patterns in river bends closely depend on two dimensionless parameters; the Dean number and the depth over the curvature radius.

  8. 3D Bioprinting a Cell-Laden Bone Matrix for Breast Cancer Metastasis Study.

    PubMed

    Zhou, Xuan; Zhu, Wei; Nowicki, Margaret; Miao, Shida; Cui, Haitao; Holmes, Benjamin; Glazer, Robert I; Zhang, Lijie Grace

    2016-11-09

    Metastasis is one of the deadliest consequences of breast cancer, with bone being one of the primary sites of occurrence. Insufficient 3D biomimetic models currently exist to replicate this process in vitro. In this study, we developed a biomimetic bone matrix using 3D bioprinting technology to investigate the interaction between breast cancer (BrCa) cells and bone stromal cells (fetal osteoblasts and human bone marrow mesenchymal stem cells (MSCs)). A tabletop stereolithography 3D bioprinter was employed to fabricate a series of bone matrices consisting of osteoblasts or MSCs encapsulated in gelatin methacrylate (GelMA) hydrogel with nanocrystalline hydroxyapatite (nHA). When BrCa cells were introduced into the stromal cell-laden bioprinted matrices, we found that the growth of BrCa cells was enhanced by the presence of osteoblasts or MSCs, whereas the proliferation of the osteoblasts or MSCs was inhibited by the BrCa cells. The BrCa cells co-cultured with MSCs or osteoblasts presented increased vascular endothelial growth factor (VEGF) secretion in comparison to that of monocultured BrCa cells. Additionally, the alkaline phosphatase activity of MSCs or osteoblasts was reduced after BrCa cell co-culture. These results demonstrate that the 3D bioprinted matrix, with BrCa cells and bone stromal cells, provides a suitable model with which to study the interactive effects of cells in the context of an artificial bone microenvironment and thus may serve as a valuable tool for the investigation of postmetastatic breast cancer progression in bone.

  9. The use of a low cost 3D scanning and printing tool in the manufacture of custom-made foot orthoses: a preliminary study

    PubMed Central

    2014-01-01

    Background Custom foot orthoses are currently recognized as the gold standard for treatment of foot and lower limb pathology. While foam and plaster casting methods are most widely used in clinical practice, technology has emerged, permitting the use of 3D scanning, computer aided design (CAD) and computer aided manufacturing (CAM) for fabrication of foot molds and custom foot orthotic components. Adoption of 3D printing, as a form of CAM, requires further investigation for use as a clinical tool. This study provides a preliminary description of a new method to manufacture foot orthoses using a novel 3D scanner and printer and compare gait kinematic outputs from shod and traditional plaster casted orthotics. Findings One participant (male, 25 years) was included with no lower extremity injuries. Foot molds were created from both plaster casting and 3D scanning/printing methods. Custom foot orthoses were then fabricated from each mold. Lower body plug-in-gait with the Oxford Foot Model on the right foot was collected for both orthotic and control (shod) conditions. The medial longitudinal arch was measured using arch height index (AHI) where a decrease in AHI represented a drop in arch height. The lowest AHI was 21.2 mm in the running shoes, followed by 21.4 mm wearing the orthoses made using 3D scanning and printing, with the highest AHI of 22.0 mm while the participant wore the plaster casted orthoses. Conclusion This preliminary study demonstrated a small increase in AHI with the 3D printing orthotic compared to the shod condition. A larger sample size may demonstrate significant patterns for the tested conditions. PMID:25015013

  10. An Experimental Study of Mixing Dynamics in 3D Granular Flows

    NASA Astrophysics Data System (ADS)

    Zaman, Zafir

    Compared with the mixing of fluids, the mixing and segregation of granular materials remains one of the big questions of science. Unlike fluids, granular materials segregate based on differences in particle properties, such as density and size. For 2D granular flows, a dynamical systems framework has been effective in describing regions of mixing and segregation. However, computational and theoretical results are just starting to form a framework for 3D granular flows, such as the bi-axial spherical tumbler (BST) flow. This thesis builds on this emerging framework through a series of experimental studies with theoretical and model support with the goal of better understanding 3D mixing. The first study tests the commonly used assumption in continuum models of granular flow that single axis tumbler flow is two dimensional. Utilizing both surface and destructive subsurface imaging, this study shows that weak 3D deviations occur in the form of an axial drift within single axis tumbler flow of varying material spanwise depth. Afterward, this thesis focuses on the development of a custom-built X-ray imaging system to non-destructively visualize the tumbler subsurface. The second study revisits the axial drift and demonstrates that wall roughness impacts the curvature and overall displacement of particle trajectories throughout the tumbler domain using subsurface particle trajectories provided by the X-ray imaging system. Finally, mixing in the fully 3D BST flow is studied. In particular, 3D persistent mixing barriers that are predicted by the dynamical systems framework are shown to exist. Some barriers are remarkably persistent for as much as 500 protocol iterations despite the presence of collisional diffusion. The structures arise from two competing effects, the cutting and shuffling action of the protocol and the stretching from the flowing layer. The tumbling protocol controls the mixing behavior as well as the types of non-mixing barriers observed. Supplementary

  11. Comparison of conventional study model measurements and 3D digital study model measurements from laser scanned dental impressions

    NASA Astrophysics Data System (ADS)

    Nugrahani, F.; Jazaldi, F.; Noerhadi, N. A. I.

    2017-08-01

    The field of orthodontics is always evolving,and this includes the use of innovative technology. One type of orthodontic technology is the development of three-dimensional (3D) digital study models that replace conventional study models made by stone. This study aims to compare the mesio-distal teeth width, intercanine width, and intermolar width measurements between a 3D digital study model and a conventional study model. Twelve sets of upper arch dental impressions were taken from subjects with non-crowding teeth. The impressions were taken twice, once with alginate and once with polivinylsiloxane. The alginate impressions used in the conventional study model and the polivinylsiloxane impressions were scanned to obtain the 3D digital study model. Scanning was performed using a laser triangulation scanner device assembled by the School of Electrical Engineering and Informatics at the Institut Teknologi Bandung and David Laser Scan software. For the conventional model, themesio-distal width, intercanine width, and intermolar width were measured using digital calipers; in the 3D digital study model they were measured using software. There were no significant differences between the mesio-distal width, intercanine width, and intermolar width measurments between the conventional and 3D digital study models (p>0.05). Thus, measurements using 3D digital study models are as accurate as those obtained from conventional study models

  12. Intracranial Catheter for Integrated 3D Ultrasound Imaging & Hyperthermia: Feasibility Study

    NASA Astrophysics Data System (ADS)

    Herickhoff, Carl D.; Light, Edward D.; Bing, Kristin Frinkley; Mukundan, Srinivasan; Grant, Gerald A.; Wolf, Patrick D.; Dixon-Tulloch, Ellen; Shih, Timothy; Hsu, Stephen J.; Smith, Stephen W.

    2009-04-01

    In this study, we investigated the feasibility of an intracranial catheter transducer capable of real-time 3D (RT3D) imaging and ultrasound hyperthermia, for application in the visualization and treatment of tumors in the brain. We designed and constructed a 12 Fr, integrated matrix and linear array catheter transducer prototype for combined RT3D imaging and heating capability. This dual-mode catheter incorporated 153 matrix array elements and 11 linear array elements, on a 0.2 mm pitch, with a total aperture size of 8.4 mm×2.3 mm. This array achieved a 3.5° C in vitro temperature rise at a 2 cm focal distance in tissue-mimicking material. The dual-mode catheter prototype was compared with a Siemens 10 Fr AcuNav™ catheter as a gold standard in experiments assessing image quality and therapeutic potential, and both probes were used in a canine brain model to image anatomical structures and color Doppler blood flow and to attempt in vivo heating.

  13. Quantification of blood perfusion using 3D power Doppler: an in-vitro flow phantom study

    NASA Astrophysics Data System (ADS)

    Raine-Fenning, N. J.; Ramnarine, K. V.; Nordin, N. M.; Campbell, B. K.

    2004-01-01

    Three-dimensional (3D) power Doppler data is increasingly used to assess and quantify blood flow and tissue perfusion. The objective of this study was to assess the validity of common 3D power Doppler ‘vascularity’ indices by quantification in well characterised in-vitro flow models. A computer driven gear pump was used to circulate a steady flow of a blood mimicking fluid through various well characterised flow phantoms to investigate the effect of the number of flow channels, flow rate, depth dependent tissue attenuation, blood mimic scatter particle concentration and ultrasound settings. 3D Power Doppler data were acquired with a Voluson 530D scanner and 7.5 MHz transvaginal transducer (GE Kretz). Virtual Organ Computer-aided Analysis software (VOCAL) was used to quantify the vascularisation index (VI), flow index (FI) and vascularisation-flow index (VFI). The vascular indices were affected by many factors, some intuitive and some with more complex or unexpected relationships (e.g. VI increased linearly with an increase in flow rate, blood mimic scatter particle concentration and number of flow channels, and had a complex dependence on pulse repetition frequency). Use of standardised settings and appropriate calibration are required in any attempt at relating ‘vascularity indices’ with flow.

  14. The human myotendinous junction: an ultrastructural and 3D analysis study.

    PubMed

    Knudsen, A B; Larsen, M; Mackey, A L; Hjort, M; Hansen, K K; Qvortrup, K; Kjaer, M; Krogsgaard, M R

    2015-02-01

    The myotendinous junction (MTJ) is a specialized structure in the musculotendinous system, where force is transmitted from muscle to tendon. Animal models have shown that the MTJ takes form of tendon finger-like processes merging with muscle tissue. The human MTJ is largely unknown and has never been described in three dimensions (3D). The aim of this study was to describe the ultrastructure of the human MTJ and render 3D reconstructions. Fourteen subjects (age 25 ± 3 years) with isolated injury of the anterior cruciate ligament (ACL), scheduled for reconstruction with a semitendinosus/gracilis graft were included. Semitendinosus and gracilis tendons were stripped as grafts for the ACL reconstruction. The MTJ was isolated from the grafts and prepared for transmission electron microscopy (TEM) and focused ion beam/scanning electron microscopy. It was possible to isolate recognizable MTJ tissue from all 14 patients. TEM images displayed similarities to observations in animals: Sarcolemmal evaginations observed as finger-like processes from the tendon and endomysium surrounding the muscle fibers, with myofilaments extending from the final Z-line of the muscle fiber merging with the tendon tissue. The 3D reconstruction revealed that tendon made ridge-like protrusions, which interdigitiated with groove-like indentations in the muscle cell. © 2014 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

  15. Motor control of voluntary arm movements. Kinematic and modelling study.

    PubMed

    Corradini, M L; Gentilucci, M; Leo, T; Rizzolatti, G

    1992-01-01

    The motor control of pointing and reaching-to-grasp movements was investigated using two different approaches (kinematic and modelling) in order to establish whether the type of control varies according to modifications of arm kinematics. Kinematic analysis of arm movements was performed on subjects' hand trajectories directed to large and small stimuli located at two different distances. The subjects were required either to grasp and to point to each stimulus. The kinematics of the subsequent movement, during which subject's hand came back to the starting position, were also studied. For both movements, kinematic analysis was performed on hand linear trajectories as well as on joint angular trajectories of shoulder and elbow. The second approach consisted in the parametric identification of the black box (ARMAX) model of the controller driving the arm movement. Such controller is hypothesized to work for the correct execution of the motor act. The order of the controller ARMAX model was analyzed with respect to the different experimental conditions (distal task, stimulus size and distance). Results from kinematic analysis showed that target distance and size influenced kinematic parameters both of angular and linear displacements. Nevertheless, the structure of the motor program was found to remain constant with distance and distal task, while it varied with precision requirements due to stimulus size. The estimated model order of the controller confirmed the invariance of the control law with regard to movement amplitude, whereas it was sensitive to target size.

  16. A Novel 3D Skin Explant Model to Study Anaerobic Bacterial Infection

    PubMed Central

    Maboni, Grazieli; Davenport, Rebecca; Sessford, Kate; Baiker, Kerstin; Jensen, Tim K.; Blanchard, Adam M.; Wattegedera, Sean; Entrican, Gary; Tötemeyer, Sabine

    2017-01-01

    Skin infection studies are often limited by financial and ethical constraints, and alternatives, such as monolayer cell culture, do not reflect many cellular processes limiting their application. For a more functional replacement, 3D skin culture models offer many advantages such as the maintenance of the tissue structure and the cell types present in the host environment. A 3D skin culture model can be set up using tissues acquired from surgical procedures or post slaughter, making it a cost effective and attractive alternative to animal experimentation. The majority of 3D culture models have been established for aerobic pathogens, but currently there are no models for anaerobic skin infections. Footrot is an anaerobic bacterial infection which affects the ovine interdigital skin causing a substantial animal welfare and financial impact worldwide. Dichelobacter nodosus is a Gram-negative anaerobic bacterium and the causative agent of footrot. The mechanism of infection and host immune response to D. nodosus is poorly understood. Here we present a novel 3D skin ex vivo model to study anaerobic bacterial infections using ovine skin explants infected with D. nodosus. Our results demonstrate that D. nodosus can invade the skin explant, and that altered expression of key inflammatory markers could be quantified in the culture media. The viability of explants was assessed by tissue integrity (histopathological features) and cell death (DNA fragmentation) over 76 h showing the model was stable for 28 h. D. nodosus was quantified in all infected skin explants by qPCR and the bacterium was visualized invading the epidermis by Fluorescent in situ Hybridization. Measurement of pro-inflammatory cytokines/chemokines in the culture media revealed that the explants released IL1β in response to bacteria. In contrast, levels of CXCL8 production were no different to mock-infected explants. The 3D skin model realistically simulates the interdigital skin and has demonstrated that D

  17. An in vitro 3D model using collagen coated gelatin nanofibers for studying breast cancer metastasis.

    PubMed

    Janani, G; Pillai, Mamatha M; Selvakumar, R; Bhattacharyya, Amitava; Sabarinath, C

    2017-02-07

    The study of breast cancer metastasis is limited due to poor knowledge of molecular progression of breast tumor and varied heterogeneity. For a better understanding of tumor metastasis, a reliable 3D in vitro model bridging the gap between 2D cultures and in vivo animal model studies is essential. Our study is focused on two key points: (i) designing a 3D microenvironment for studying metastasis and (ii) simulating the metastasis milieu by inducing epithelial to mesenchymal transition (EMT) and mesenchymal to epithelial transition (MET). An electrospun gelatin nanofiber matrix (EGNF) was fabricated using electrospinning and further dip coated with different concentrations of collagen to obtain surface complexity and mechanical properties, similar to connective tissues. Nanofiber matrices were physically characterized by Fourier transform infrared spectroscopy (FTIR), atomic force microscopy (AFM), and field-emission scanning electron microscopy (FESEM). The FTIR, AFM, and FESEM results indicated the crosslinking and confirmed the presence of pores in the nanofiber matrices. Comparative studies on biocompatibility, cell attachment, and the proliferation of MCF-7 cells on EGNF and collagen coated gelatin nanofibrous matrix (CCGM) revealed higher cellular attachment and proliferation in CCGM. CCGM with human metastatic breast cancer cell line (MCF-7) was taken to study breast cancer metastasis using estrogen (induces EMT) and progesterone (induces MET) hormones for 24 h. Quantitative real-time PCR was used for quantifying the expression of metastasis related genes, and fluorescence microscopy for verifying the invasion of cells to the matrices. The expression of E-cadherin and matrix metalloproteinase 2 (MMP 2) confirmed the occurrence of EMT and MET. Live cell imaging and cellular attachment showed significant increase of cellular invasion in crosslinked 0.15% CCGM that serves as a suitable non-toxic, biocompatible, and affordable scaffold for studying breast cancer

  18. Molecular field analysis and 3D-quantitative structure-activity relationship study (MFA 3D-QSAR) unveil novel features of bile acid recognition at TGR5.

    PubMed

    Macchiarulo, Antonio; Gioiello, Antimo; Thomas, Charles; Massarotti, Alberto; Nuti, Roberto; Rosatelli, Emiliano; Sabbatini, Paola; Schoonjans, Kristina; Auwerx, Johan; Pellicciari, Roberto

    2008-09-01

    Bile acids regulate nongenomic actions through the activation of TGR5, a membrane receptor that is G protein-coupled to the induction of adenylate cyclase. In this work, a training set of 43 bile acid derivatives is used to develop a molecular interaction field analysis (MFA) and a 3D-quantitative structure-activity relationship study (3D-QSAR) of TGR5 agonists. The predictive ability of the resulting model is evaluated using an external set of compounds with known TGR5 activity, and six bile acid derivatives whose unknown TGR5 activity is herein assessed with in vitro luciferase assay of cAMP formation. The results show a good predictive model and indicate a statistically relevant degree of correlation between the TGR5 activity and the molecular interaction fields produced by discrete positions of the bile acid scaffold. This information is instrumental to extend on a quantitative basis the current structure-activity relationships of bile acids as TGR5 modulators and will be fruitful to design new potent and selective agonists of the receptor.

  19. A 3-D Computational Study of a Variable Camber Continuous Trailing Edge Flap (VCCTEF) Spanwise Segment

    NASA Technical Reports Server (NTRS)

    Kaul, Upender K.; Nguyen, Nhan T.

    2015-01-01

    Results of a computational study carried out to explore the effects of various elastomer configurations joining spanwise contiguous Variable Camber Continuous Trailing Edge Flap (VCCTEF) segments are reported here. This research is carried out as a proof-of-concept study that will seek to push the flight envelope in cruise with drag optimization as the objective. The cruise conditions can be well off design such as caused by environmental conditions, maneuvering, etc. To handle these off-design conditions, flap deflection is used so when the flap is deflected in a given direction, the aircraft angle of attack changes accordingly to maintain a given lift. The angle of attack is also a design parameter along with the flap deflection. In a previous 2D study,1 the effect of camber was investigated and the results revealed some insight into the relative merit of various camber settings of the VCCTEF. The present state of the art has not advanced sufficiently to do a full 3-D viscous analysis of the whole NASA Generic Transport Model (GTM) wing with VCCTEF deployed with elastomers. Therefore, this study seeks to explore the local effects of three contiguous flap segments on lift and drag of a model devised here to determine possible trades among various flap deflections to achieve desired lift and drag results. Although this approach is an approximation, it provides new insights into the "local" effects of the relative deflections of the contiguous spanwise flap systems and various elastomer segment configurations. The present study is a natural extension of the 2-D study to assess these local 3-D effects. Design cruise condition at 36,000 feet at free stream Mach number of 0.797 and a mean aerodynamic chord (MAC) based Reynolds number of 30.734x10(exp 6) is simulated for an angle of attack (AoA) range of 0 to 6 deg. In the previous 2-D study, the calculations revealed that the parabolic arc camber (1x2x3) and circular arc camber (VCCTEF222) offered the best L

  20. 3-D QSAR studies on histone deacetylase inhibitors. A GOLPE/GRID approach on different series of compounds.

    PubMed

    Ragno, Rino; Simeoni, Silvia; Valente, Sergio; Massa, Silvio; Mai, Antonello

    2006-01-01

    Docking simulation and three-dimensional quantitative structure-activity relationships (3D-QSARs) analyses were conducted on four series of HDAC inhibitors. The studies were performed using the GRID/GOLPE combination using structure-based alignment. Twelve 3-D QSAR models were derived and discussed. Compared to previous studies on similar inhibitors, the present 3-D QSAR investigation proved to be of higher statistical value, displaying for the best global model r2, q2, and cross-validated SDEP values of 0.94, 0.83, and 0.41, respectively. A comparison of the 3-D QSAR maps with the structural features of the binding site showed good correlation. The results of 3D-QSAR and docking studies validated each other and provided insight into the structural requirements for anti-HDAC activity. To our knowledge this is the first 3-D QSAR application on a broad molecular diversity training set of HDACIs.

  1. Monte Carlo generators for studies of the 3D structure of the nucleon

    DOE PAGES

    Avakian, Harut; D'Alesio, U.; Murgia, F.

    2015-01-23

    In this study, extraction of transverse momentum and space distributions of partons from measurements of spin and azimuthal asymmetries requires development of a self consistent analysis framework, accounting for evolution effects, and allowing control of systematic uncertainties due to variations of input parameters and models. Development of realistic Monte-Carlo generators, accounting for TMD evolution effects, spin-orbit and quark-gluon correlations will be crucial for future studies of quark-gluon dynamics in general and 3D structure of the nucleon in particular.

  2. 2D and 3D Terahertz Imaging and X-Rays CT for Sigillography Study

    NASA Astrophysics Data System (ADS)

    Fabre, M.; Durand, R.; Bassel, L.; Recur, B.; Balacey, H.; Bou Sleiman, J.; Perraud, J.-B.; Mounaix, P.

    2017-04-01

    Seals are part of our cultural heritage but the study of these objects is limited because of their fragility. Terahertz and X-Ray imaging are used to analyze a collection of wax seals from the fourteenth to eighteenth centuries. In this work, both techniques are compared in order to discuss their advantages and limits and their complementarity for conservation state study of the samples. Thanks to 3D analysis and reconstructions, defects and fractures are detected with an estimation of their depth position. The path from the parchment tongue inside the seals is also detected.

  3. 2D and 3D Terahertz Imaging and X-Rays CT for Sigillography Study

    NASA Astrophysics Data System (ADS)

    Fabre, M.; Durand, R.; Bassel, L.; Recur, B.; Balacey, H.; Bou Sleiman, J.; Perraud, J.-B.; Mounaix, P.

    2017-01-01

    Seals are part of our cultural heritage but the study of these objects is limited because of their fragility. Terahertz and X-Ray imaging are used to analyze a collection of wax seals from the fourteenth to eighteenth centuries. In this work, both techniques are compared in order to discuss their advantages and limits and their complementarity for conservation state study of the samples. Thanks to 3D analysis and reconstructions, defects and fractures are detected with an estimation of their depth position. The path from the parchment tongue inside the seals is also detected.

  4. 3D landmarking in multiexpression face analysis: a preliminary study on eyebrows and mouth.

    PubMed

    Vezzetti, Enrico; Marcolin, Federica

    2014-08-01

    The application of three-dimensional (3D) facial analysis and landmarking algorithms in the field of maxillofacial surgery and other medical applications, such as diagnosis of diseases by facial anomalies and dysmorphism, has gained a lot of attention. In a previous work, we used a geometric approach to automatically extract some 3D facial key points, called landmarks, working in the differential geometry domain, through the coefficients of fundamental forms, principal curvatures, mean and Gaussian curvatures, derivatives, shape and curvedness indexes, and tangent map. In this article we describe the extension of our previous landmarking algorithm, which is now able to extract eyebrows and mouth landmarks using both old and new meshes. The algorithm has been tested on our face database and on the public Bosphorus 3D database. We chose to work on the mouth and eyebrows as a separate study because of the role that these parts play in facial expressions. In fact, since the mouth is the part of the face that moves the most and affects mainly facial expressions, extracting mouth landmarks from various facial poses means that the newly developed algorithm is pose-independent. This journal requires that authors assign a level of evidence to each submission to which Evidence-Based Medicine rankings are applicable. This excludes Review Articles, Book Reviews, and manuscripts that concern Basic Science, Animal Studies, Cadaver Studies, and Experimental Studies. For a full description of these Evidence-Based Medicine ratings, please refer to the Table of Contents or the online Instructions to Authors http://www.springer.com/00266 .

  5. A 3D Human Lung Tissue Model for Functional Studies on Mycobacterium tuberculosis Infection

    PubMed Central

    Braian, Clara; Svensson, Mattias; Brighenti, Susanna; Lerm, Maria; Parasa, Venkata R.

    2015-01-01

    Tuberculosis (TB) still holds a major threat to the health of people worldwide, and there is a need for cost-efficient but reliable models to help us understand the disease mechanisms and advance the discoveries of new treatment options. In vitro cell cultures of monolayers or co-cultures lack the three-dimensional (3D) environment and tissue responses. Herein, we describe an innovative in vitro model of a human lung tissue, which holds promise to be an effective tool for studying the complex events that occur during infection with Mycobacterium tuberculosis (M. tuberculosis). The 3D tissue model consists of tissue-specific epithelial cells and fibroblasts, which are cultured in a matrix of collagen on top of a porous membrane. Upon air exposure, the epithelial cells stratify and secrete mucus at the apical side. By introducing human primary macrophages infected with M. tuberculosis to the tissue model, we have shown that immune cells migrate into the infected-tissue and form early stages of TB granuloma. These structures recapitulate the distinct feature of human TB, the granuloma, which is fundamentally different or not commonly observed in widely used experimental animal models. This organotypic culture method enables the 3D visualization and robust quantitative analysis that provides pivotal information on spatial and temporal features of host cell-pathogen interactions. Taken together, the lung tissue model provides a physiologically relevant tissue micro-environment for studies on TB. Thus, the lung tissue model has potential implications for both basic mechanistic and applied studies. Importantly, the model allows addition or manipulation of individual cell types, which thereby widens its use for modelling a variety of infectious diseases that affect the lungs. PMID:26485646

  6. A novel approach to spinal 3-D kinematic assessment using inertial sensors: Towards effective quantitative evaluation of low back pain in clinical settings.

    PubMed

    Ashouri, Sajad; Abedi, Mohsen; Abdollahi, Masoud; Dehghan Manshadi, Farideh; Parnianpour, Mohamad; Khalaf, Kinda

    2017-08-04

    This paper presents a novel approach for evaluating LBP in various settings. The proposed system uses cost-effective inertial sensors, in conjunction with pattern recognition techniques, for identifying sensitive classifiers towards discriminate identification of LB patients. 24 healthy individuals and 28 low back pain patients performed trunk motion tasks in five different directions for validation. Four combinations of these motions were selected based on literature, and the corresponding kinematic data was collected. Upon filtering (4th order, low pass Butterworth filter) and normalizing the data, Principal Component Analysis was used for feature extraction, while Support Vector Machine classifier was applied for data classification. The results reveal that non-linear Kernel classification can be adequately employed for low back pain identification. Our preliminary results demonstrate that using a single inertial sensor placed on the thorax, in conjunction with a relatively simple test protocol, can identify low back pain with an accuracy of 96%, a sensitivity of %100, and specificity of 92%. While our approach shows promising results, further validation in a larger population is required towards using the methodology as a practical quantitative assessment tool for the detection of low back pain in clinical/rehabilitation settings. Copyright © 2017 Elsevier Ltd. All rights reserved.

  7. 3D geometry and kinematic evolution of the Wadi Mayh sheath fold, Oman, using detailed mapping from high-resolution photography

    NASA Astrophysics Data System (ADS)

    Cornish, Sam; Searle, Mike

    2017-08-01

    The Wadi Mayh sheath fold in north-eastern Oman is one of the largest and best-exposed sheath folds known, and presents a unique opportunity to better understand this somewhat enigmatic style of deformation. We undertook high-resolution photographic surveying along Wadi Mayh to document the sheath fold in 61 georeferenced panoramic photomerges. Here we present ten such images that provide a structural interpretation of the sheath fold and surrounding structure. We resolve this structure in a simplified three-dimensional model and in two orthogonal cross sections, and propose a kinematic evolution to explain the geometry. The Wadi Mayh sheath fold is the most prominent example within what we suggest is a composite sequence of sheath folds, which is itself enclosed within a SSW-closing recumbent syncline at the base of the major Saih Hatat nappe. Sheath folding is accommodated within Permian Saiq Formation limestones showing carpholite assemblages (6-8 kbar; 275-375 °C). A major discontinuity separates this sequence from enveloping older rock units. The sequence formed during progressive top-to-north, ductile shearing as the overlying nappe migrated northwards with respect to the underthrusting Hulw unit. This process occurred during SSW-directed exhumation of partially subducted continental crust in NE Oman, approximately 15 Ma after obduction of the Oman ophiolite initiated.

  8. Multiwavelength Study to Reveal Dust Properties and Cloud 3D Structure

    NASA Astrophysics Data System (ADS)

    Pagani, Laurent; Lefevre, C.

    2017-06-01

    The study of low-mass prestellar cores is a difficult task which needs to gather several tools, dust and gas observations, radiative transfer modelling. No single tracer can reveal the physical characteristics of these cores. We show that based on observations of N2H+, and dust from 1 µm to 1 mm, one can hope today to have a faithful 3D description of a dark cloud and its prestellar core. Dust being ill-defined, only the combination of absorption, scattering and emission measurements and modelling can alleviate the degeneracy between temperature, density and emissivity of the dust.

  9. Automated 3D ultrasound elastography of the breast: a phantom validation study

    NASA Astrophysics Data System (ADS)

    Hendriks, Gijs A. G. M.; Holländer, Branislav; Menssen, Jan; Milkowski, Andy; Hansen, Hendrik H. G.; de Korte, Chris L.

    2016-04-01

    In breast cancer screening, the automated breast volume scanner (ABVS) was introduced as an alternative for mammography since the latter technique is less suitable for women with dense breasts. Although clinical studies show promising results, clinicians report two disadvantages: long acquisition times (>90 s) introducing breathing artefacts, and high recall rates due to detection of many small lesions of uncertain malignant potential. Technical improvements for faster image acquisition and better discrimination between benign and malignant lesions are thus required. Therefore, the aim of this study was to investigate if 3D ultrasound elastography using plane-wave imaging is feasible. Strain images of a breast elastography phantom were acquired by an ABVS-mimicking device that allowed axial and elevational movement of the attached transducer. Pre- and post-deformation volumes were acquired with different constant speeds (between 1.25 and 40.0 mm s-1) and by three protocols: Go-Go (pre- and post-volumes with identical start and end positions), Go-Return (similar to Go-Go with opposite scanning directions) and Control (pre- and post-volumes acquired per position, this protocol can be seen as reference). Afterwards, 2D and 3D cross-correlation and strain algorithms were applied to the acquired volumes and the results were compared. The Go-Go protocol was shown to be superior with better strain image quality (CNRe and SNRe) than Go-Return and to be similar as Control. This can be attributed to applying opposite mechanical forces to the phantom during the Go-Return protocol, leading to out-of-plane motion. This motion was partly compensated by using 3D cross-correlation. However, the quality was still inferior to Go-Go. Since these results were obtained in a phantom study with controlled deformations, the effect of possible uncontrolled in vivo tissue motion artefacts has to be addressed in future studies. In conclusion, it seems feasible to implement 3D ultrasound

  10. Comparison of User Performance with Interactive and Static 3d Visualization - Pilot Study

    NASA Astrophysics Data System (ADS)

    Herman, L.; Stachoň, Z.

    2016-06-01

    Interactive 3D visualizations of spatial data are currently available and popular through various applications such as Google Earth, ArcScene, etc. Several scientific studies have focused on user performance with 3D visualization, but static perspective views are used as stimuli in most of the studies. The main objective of this paper is to try to identify potential differences in user performance with static perspective views and interactive visualizations. This research is an exploratory study. An experiment was designed as a between-subject study and a customized testing tool based on open web technologies was used for the experiment. The testing set consists of an initial questionnaire, a training task and four experimental tasks. Selection of the highest point and determination of visibility from the top of a mountain were used as the experimental tasks. Speed and accuracy of each task performance of participants were recorded. The movement and actions in the virtual environment were also recorded within the interactive variant. The results show that participants deal with the tasks faster when using static visualization. The average error rate was also higher in the static variant. The findings from this pilot study will be used for further testing, especially for formulating of hypotheses and designing of subsequent experiments.

  11. Does the mitral annulus shrink or enlarge during systole? A real-time 3D echocardiography study.

    PubMed

    Kwan, Jun; Jeon, Min-Jae; Kim, Dae-Hyeok; Park, Keum-Soo; Lee, Woo-Hyung

    2009-04-01

    This study was conducted to explore the geometrical changes of the mitral annulus during systole. The 3D shape of the mitral annulus was reconstructed in 13 normal subjects who had normal structure of the mitral apparatus using real-time 3D echocardiography (RT3DE) and 3D computer software. The two orthogonal (antero-posterior and commissure-commissure) dimensions, the areas (2D projected and 3D surface) and the non-planarity of the mitral annulus were estimated during early, mid and late systole. We demonstrated that the MA had a "saddle shape" appearance and it consistently enlarged mainly in the antero-posterior direction from early to late systole with lessening of its non-planarity, as was determined by 3D reconstruction using RT3DE and 3D computer software.

  12. A Study of the dimensional accuracy obtained by low cost 3D printing for possible application in medicine

    NASA Astrophysics Data System (ADS)

    Kitsakis, K.; Alabey, P.; Kechagias, J.; Vaxevanidis, N.

    2016-11-01

    Low cost 3D printing' is a terminology that referred to the fused filament fabrication (FFF) technique, which constructs physical prototypes, by depositing material layer by layer using a thermal nozzle head. Nowadays, 3D printing is widely used in medical applications such as tissue engineering as well as supporting tool in diagnosis and treatment in Neurosurgery, Orthopedic and Dental-Cranio-Maxillo-Facial surgery. 3D CAD medical models are usually obtained by MRI or CT scans and then are sent to a 3D printer for physical model creation. The present paper is focused on a brief overview of benefits and limitations of 3D printing applications in the field of medicine as well as on a dimensional accuracy study of low-cost 3D printing technique.

  13. 3D elastic full waveform inversion: case study from a land seismic survey

    NASA Astrophysics Data System (ADS)

    Kormann, Jean; Marti, David; Rodriguez, Juan-Esteban; Marzan, Ignacio; Ferrer, Miguel; Gutierrez, Natalia; Farres, Albert; Hanzich, Mauricio; de la Puente, Josep; Carbonell, Ramon

    2016-04-01

    Full Waveform Inversion (FWI) is one of the most advanced processing methods that is recently reaching a mature state after years of solving theoretical and technical issues such as the non-uniqueness of the solution and harnessing the huge computational power required by realistic scenarios. BSIT (Barcelona Subsurface Imaging Tools, www.bsc.es/bsit) includes a FWI algorithm that can tackle with very complex problems involving large datasets. We present here the application of this system to a 3D dataset acquired to constrain the shallow subsurface. This is where the wavefield is the most complicated, because most of the wavefield conversions takes place in the shallow region and also because the media is much more laterally heterogeneous. With this in mind, at least isotropic elastic approximation would be suitable as kernel engine for FWI. The current study explores the possibilities to apply elastic isotropic FWI using only the vertical component of the recorded seismograms. The survey covers an area of 500×500 m2, and consists in a receivers grid of 10 m×20 m combined with a 250 kg accelerated weight-drop as source on a displaced grid of 20 m×20 m. One of the main challenges in this case study is the costly 3D modeling that includes topography and substantial free surface effects. FWI is applied to a data subset (shooting lines 4 to 12), and is performed for 3 frequencies ranging from 15 to 25 Hz. The starting models are obtained from travel-time tomography and the all computation is run on 75 nodes of Mare Nostrum supercomputer during 3 days. The resulting models provide a higher resolution of the subsurface structures, and show a good correlation with the available borehole measurements. FWI allows to extend in a reliable way this 1D knowledge (borehole) to 3D.

  14. Characterization of a novel bioreactor system for 3D cellular mechanobiology studies.

    PubMed

    Cook, Colin A; Huri, Pinar Y; Ginn, Brian P; Gilbert-Honick, Jordana; Somers, Sarah M; Temple, Joshua P; Mao, Hai-Quan; Grayson, Warren L

    2016-08-01

    In vitro engineering systems can be powerful tools for studying tissue development in response to biophysical stimuli as well as for evaluating the functionality of engineered tissue grafts. It has been challenging, however, to develop systems that adequately integrate the application of biomimetic mechanical strain to engineered tissue with the ability to assess functional outcomes in real time. The aim of this study was to design a bioreactor system capable of real-time conditioning (dynamic, uniaxial strain, and electrical stimulation) of centimeter-long 3D tissue engineered constructs simultaneously with the capacity to monitor local strains. The system addresses key limitations of uniform sample loading and real-time imaging capabilities. Our system features an electrospun fibrin scaffold, which exhibits physiologically relevant stiffness and uniaxial alignment that facilitates cell adhesion, alignment, and proliferation. We have demonstrated the capacity for directly incorporating human adipose-derived stromal/stem cells into the fibers during the electrospinning process and subsequent culture of the cell-seeded constructs in the bioreactor. The bioreactor facilitates accurate pre-straining of the 3D constructs as well as the application of dynamic and static uniaxial strains while monitoring bulk construct tensions. The incorporation of fluorescent nanoparticles throughout the scaffolds enables in situ monitoring of local strain fields using fluorescent digital image correlation techniques, since the bioreactor is imaging compatible, and allows the assessment of local sample stiffness and stresses when coupled with force sensor measurements. In addition, the system is capable of measuring the electromechanical coupling of skeletal muscle explants by applying an electrical stimulus and simultaneously measuring the force of contraction. The packaging of these technologies, biomaterials, and analytical methods into a single bioreactor system has produced a

  15. Spreading and Deposit Characteristics of a Rapid Dry Granular Avalanche Across 3D Topography: Experimental Study

    NASA Astrophysics Data System (ADS)

    Wang, Yu-Feng; Xu, Qiang; Cheng, Qian-Gong; Li, Yan; Luo, Zhong-Xu

    2016-11-01

    Aiming to understand the propagation and deposit behaviours of a granular avalanche along a 3D complex basal terrain, a new 3D experimental platform in 1/400 scale was developed according to the natural terrain of the Xiejiadianzi rock avalanche, with a series of laboratory experiments being conducted. Through the conduction of these tests, parameters, including the morphological evolution of sliding mass, run-outs and velocities of surficial particles, thickness contour and centre of final deposit, equivalent frictional coefficient, and energy dissipation, are documented and analysed, with the geomorphic control effect, material grain size effect, drop angle effect, and drop distance effect on rock avalanche mobility being discussed primarily. From the study, some interesting conclusions for a better understanding of rock avalanche along a 3D complex basal topography are reached. (1) For the granular avalanche tested in this study, great differences between the evolutions of the debris along the right and left branch valleys were observed, with an obvious geomorphic control effect on avalanche mobility presented. In addition, some other interesting features, including groove-like trough and superelevation, were also observed under the control of the topographic interferences. (2) The equivalent frictional coefficients of the granular avalanches tested here range from 0.48 to 0.57, which is lower than that reached with a set-up composed of an inclined chute and horizontal plate and higher than that reached using a set-up composed of only an inclined chute. And the higher the drop angle and fine particle content, the higher the equivalent frictional coefficient. The effect of drop distance on avalanche mobility is minor. (3) For a granular avalanche, momentum transfer plays an important role in the motion of mass, which can accelerate the mobility of the front part greatly through delivering the kinetic energy of the rear part to the front.

  16. A feasibility study of hand kinematics for EVA analysis using magnetic resonance imaging

    NASA Technical Reports Server (NTRS)

    Dickenson, Reuben D.; Lorenz, Christine H.; Peterson, Steven W.; Strauss, Alvin M.; Main, John A.

    1992-01-01

    A new method for analyzing the kinematics of joint motion using magnetic resonance imaging (MRI) is described. The reconstruction of the metacarpalphalangeal joint of the left index finger into a 3D graphic display is shown. From the reconstructed volumetric images, measurements of the angles of movement of the applicable bones are obtained and processed by analyzing the screw motion of the joint. Landmark positions are chosen at distinctive locations of the joint at fixed image threshold intensity levels to ensure repeatability. The primarily 2D planar motion of this joint is then studied using a method of constructing coordinate systems using three or more points. A transformation matrix based on a world coordinate system describes the location and orientation of the local target coordinate system. The findings show the applicability of MRI to joint kinematics for gaining further knowledge of the hand-glove design for EVA.

  17. A feasibility study of hand kinematics for EVA analysis using magnetic resonance imaging

    NASA Technical Reports Server (NTRS)

    Dickenson, Reuben D.; Lorenz, Christine H.; Peterson, Steven W.; Strauss, Alvin M.; Main, John A.

    1992-01-01

    A new method for analyzing the kinematics of joint motion using magnetic resonance imaging (MRI) is described. The reconstruction of the metacarpalphalangeal joint of the left index finger into a 3D graphic display is shown. From the reconstructed volumetric images, measurements of the angles of movement of the applicable bones are obtained and processed by analyzing the screw motion of the joint. Landmark positions are chosen at distinctive locations of the joint at fixed image threshold intensity levels to ensure repeatability. The primarily 2D planar motion of this joint is then studied using a method of constructing coordinate systems using three or more points. A transformation matrix based on a world coordinate system describes the location and orientation of the local target coordinate system. The findings show the applicability of MRI to joint kinematics for gaining further knowledge of the hand-glove design for EVA.

  18. 3D virtual human atria: A computational platform for studying clinical atrial fibrillation

    PubMed Central

    Aslanidi, Oleg V; Colman, Michael A; Stott, Jonathan; Dobrzynski, Halina; Boyett, Mark R; Holden, Arun V; Zhang, Henggui

    2011-01-01

    Despite a vast amount of experimental and clinical data on the underlying ionic, cellular and tissue substrates, the mechanisms of common atrial arrhythmias (such as atrial fibrillation, AF) arising from the functional interactions at the whole atria level remain unclear. Computational modelling provides a quantitative framework for integrating such multi-scale data and understanding the arrhythmogenic behaviour that emerges from the collective spatio-temporal dynamics in all parts of the heart. In this study, we have developed a multi-scale hierarchy of biophysically detailed computational models for the human atria – 3D virtual human atria. Primarily, diffusion tensor MRI reconstruction of the tissue geometry and fibre orientation in the human sinoatrial node (SAN) and surrounding atrial muscle was integrated into the 3D model of the whole atria dissected from the Visible Human dataset. The anatomical models were combined with the heterogeneous atrial action potential (AP) models, and used to simulate the AP conduction in the human atria under various conditions: SAN pacemaking and atrial activation in the normal rhythm, break-down of regular AP wave-fronts during rapid atrial pacing, and the genesis of multiple re-entrant wavelets characteristic of AF. Contributions of different properties of the tissue to the mechanisms of the normal rhythm and AF arrhythmogenesis are investigated and discussed. The 3D model of the atria itself was incorporated into the torso model to simulate the body surface ECG patterns in the normal and arrhythmic conditions. Therefore, a state-of-the-art computational platform has been developed, which can be used for studying multi-scale electrical phenomena during atrial conduction and arrhythmogenesis. Results of such simulations can be directly compared with experimental electrophysiological and endocardial mapping data, as well as clinical ECG recordings. More importantly, the virtual human atria can provide validated means for

  19. Mechanisms of clay smear formation in 3D - a field study

    NASA Astrophysics Data System (ADS)

    Kettermann, Michael; Tronberens, Sebastian; Urai, Janos; Asmus, Sven

    2016-04-01

    Clay smears in sedimentary basins are important factors defining the sealing properties of faults. However, as clay smears are highly complex 3D structures, processes involved in the formation and deformation of clay smears are not well identified and understood. To enhance the prediction of sealing properties of clay smears extensive studies of these structures are necessary including the 3D information. We present extraordinary outcrop data from an open cast lignite mine (Hambach) in the Lower Rhine Embayment, Germany. The faults formed at a depth of 150 m, and have Shale Gouge Ratios between 0.1 and 0.3. Material in the fault zones is layered, with sheared sand, sheared clay and tectonically mixed sand-clay gouge. We studied the 3D thickness distribution of clay smear from a series of thin-spaced incremental cross-sections and several cross-sections in larger distances along the fault. Additionally, we excavated two large clay smear surfaces. Our observations show that clay smears are strongly affected by R- and R'-shears, mostly at the footwall side of our outcrops. These shears can locally cross and offset clay smears, forming holes. Thinnest parts of the clay smears are often located close to source layer cutoffs. Investigating the 3D thickness of the clay smears shows a heterogeneous distribution, rather than a continuous thinning of the smear with increasing distance to the source layers. We found two types of layered clay smears: one with continuous sheared sand between two clay smears providing vertical pathways for fluid flow, and one which consists of overlapping clay patches separated by sheared sand that provide a tortuous pathway across the clay smear. On smaller scale we identified grain-scale mixing as an important process for the formation of clay smears. Sand can be entrained into the clay smear by mixing from the surrounding host rock as well as due to intense shearing of sand lenses that were incorporated into the smear. This causes clay smears

  20. Self-assembly of ABC triblock copolymers under 3D soft confinement: a Monte Carlo study.

    PubMed

    Yan, Nan; Zhu, Yutian; Jiang, Wei

    2016-01-21

    Under three-dimensional (3D) soft confinement, block copolymers can self-assemble into unique nanostructures that cannot be fabricated in an un-confined space. Linear ABC triblock copolymers containing three chemically distinct polymer blocks possess relatively complex chain architecture, which can be a promising candidate for the 3D confined self-assembly. In the current study, the Monte Carlo technique was applied in a lattice model to study the self-assembly of ABC triblock copolymers under 3D soft confinement, which corresponds to the self-assembly of block copolymers confined in emulsion droplets. We demonstrated how to create various nanostructures by tuning the symmetry of ABC triblock copolymers, the incompatibilities between different block types, and solvent properties. Besides common pupa-like and bud-like nanostructures, our simulations predicted various unique self-assembled nanostructures, including a striped-pattern nanoparticle with intertwined A-cages and C-cages, a pyramid-like nanoparticle with four Janus B-C lamellae adhered onto its four surfaces, an ellipsoidal nanoparticle with a dumbbell-like A-core and two Janus B-C lamellae and a Janus B-C ring surrounding the A-core, a spherical nanoparticle with a A-core and a helical Janus B-C stripe around the A-core, a cubic nanoparticle with a cube-shape A-core and six Janus B-C lamellae adhered onto the surfaces of the A-cube, and a spherical nanoparticle with helical A, B and C structures, from the 3D confined self-assembly of ABC triblock copolymers. Moreover, the formation mechanisms of some typical nanostructures were also examined by the variations of the contact numbers with time and a series of snapshots at different Monte Carlo times. It is found that ABC triblock copolymers usually aggregate into a loose aggregate at first, and then the microphase separation between A, B and C blocks occurs, resulting in the formation of various nanostructures.

  1. 3D virtual human atria: A computational platform for studying clinical atrial fibrillation.

    PubMed

    Aslanidi, Oleg V; Colman, Michael A; Stott, Jonathan; Dobrzynski, Halina; Boyett, Mark R; Holden, Arun V; Zhang, Henggui

    2011-10-01

    Despite a vast amount of experimental and clinical data on the underlying ionic, cellular and tissue substrates, the mechanisms of common atrial arrhythmias (such as atrial fibrillation, AF) arising from the functional interactions at the whole atria level remain unclear. Computational modelling provides a quantitative framework for integrating such multi-scale data and understanding the arrhythmogenic behaviour that emerges from the collective spatio-temporal dynamics in all parts of the heart. In this study, we have developed a multi-scale hierarchy of biophysically detailed computational models for the human atria--the 3D virtual human atria. Primarily, diffusion tensor MRI reconstruction of the tissue geometry and fibre orientation in the human sinoatrial node (SAN) and surrounding atrial muscle was integrated into the 3D model of the whole atria dissected from the Visible Human dataset. The anatomical models were combined with the heterogeneous atrial action potential (AP) models, and used to simulate the AP conduction in the human atria under various conditions: SAN pacemaking and atrial activation in the normal rhythm, break-down of regular AP wave-fronts during rapid atrial pacing, and the genesis of multiple re-entrant wavelets characteristic of AF. Contributions of different properties of the tissue to mechanisms of the normal rhythm and arrhythmogenesis were investigated. Primarily, the simulations showed that tissue heterogeneity caused the break-down of the normal AP wave-fronts at rapid pacing rates, which initiated a pair of re-entrant spiral waves; and tissue anisotropy resulted in a further break-down of the spiral waves into multiple meandering wavelets characteristic of AF. The 3D virtual atria model itself was incorporated into the torso model to simulate the body surface ECG patterns in the normal and arrhythmic conditions. Therefore, a state-of-the-art computational platform has been developed, which can be used for studying multi

  2. 3D CFDTD PIC Simulation Study on Low-Frequency Oscillations in a Gyrotron

    NASA Astrophysics Data System (ADS)

    Lin, M. C.; Smithe, D. N.

    2011-10-01

    Low-frequency oscillations (LFOs) have been observed in a high average power gyrotron and the trapped electron population contributing to the oscillation has been measured. As high average power gyrotrons are the most promising millimeter wave source for thermonuclear fusion research, it is important to get a better understanding of this parasitic phenomenon to avoid any deterioration of the electron beam quality thus reducing the gyrotron efficiency. However, understanding of the LFOs remains incomplete and a full picture of this parasitic phenomenon has not been seen yet. In this work, we use a 3D conformal finite-difference time-domain (CFDTD) particle-in-cell (PIC) method to accurately and efficiently study the LFOs in a magnetron injection gun (MIG) of a high average power gyrotron. Employing a highly parallelized computation, the model can be simulated in time domain more realistically. LFOs have been obtained in a 3D time domain simulation for the first time. From our preliminary simulation studies, it is found that not only magnetic compression profile but initial velocity or velocity ratio play an important role in the operation of a MIG electron gun. In addition, the secondary emission effects on the LFOs are also studied. Detailed results will be presented. Work supported by the U.S. Department of Energy under Grant No. DE-SC0004436.

  3. 3D source localization derived from subdural strip and grid electrodes: a simulation study.

    PubMed

    Dümpelmann, Matthias; Fell, Jürgen; Wellmer, Jörg; Urbach, Horst; Elger, Christian E

    2009-06-01

    Little experience exists in the application of source reconstruction methods to recordings from subdural strip and grid electrodes. This study addressed the question, whether reliable and accurate 3D source localization is possible from the Electrocorticogram (ECoG). The accuracy of source reconstruction was investigated by simulations and a case study. Simulated sources were used to compute potentials at the electrode positions derived from the MRI of a patient with subdural electrodes. Used procedures were the linear estimation (minimum norm) algorithm and the MUSIC (MUltiple SIgnal Classification) scan. Maxima of linear estimation were attracted to adjacent electrodes. Reliable localization with a localization error 15 mm was only achieved for about 35% of the original source positions. Maxima of the MUSIC metric were identical to original positions for simulations without noise. Noise reduced the percentage of reliable solutions down to a 79.0%. Electrode contacts distant to the source had small influence on localization accuracy. The case study supported simulation results. Reliable source reconstruction derived from ECoG can be achieved by the application of the MUSIC algorithm. Linear estimation needs additional compensation mechanisms. MUSIC based 3D localization based on ECoG has the potential improving epilepsy diagnosis and cognitive research.

  4. Image informatics for studying signal transduction in cells interacting with 3D matrices

    NASA Astrophysics Data System (ADS)

    Tzeranis, Dimitrios S.; Guo, Jin; Chen, Chengpin; Yannas, Ioannis V.; Wei, Xunbin; So, Peter T. C.

    2014-03-01

    Cells sense and respond to chemical stimuli on their environment via signal transduction pathways, complex networks of proteins whose interactions transmit chemical information. This work describes an implementation of image informatics, imaging-based methodologies for studying signal transduction networks. The methodology developed focuses on studying signal transduction networks in cells that interact with 3D matrices. It utilizes shRNA-based knock down of network components, 3D high-content imaging of cells inside the matrix by spectral multi-photon microscopy, and single-cell quantification using features that describe both cell morphology and cell-matrix adhesion pattern. The methodology is applied in a pilot study of TGFβ signaling via the SMAD pathway in fibroblasts cultured inside porous collagen-GAG scaffolds, biomaterials similar to the ones used clinically to induce skin regeneration. Preliminary results suggest that knocking down all rSMAD components affects fibroblast response to TGFβ1 and TGFβ3 isoforms in different ways, and suggest a potential role for SMAD1 and SMAD5 in regulating TGFβ isoform response. These preliminary results need to be verified with proteomic results that can provide solid evidence about the particular role of individual components of the SMAD pathway.

  5. 2D and 3D-QSAR studies on antiproliferative thiazolidine analogs

    NASA Astrophysics Data System (ADS)

    Liao, Si Yan; Qian, Li; Chen, Jin Can; Lu, Hai Liang; Zheng, Kang Cheng

    Two-dimensional (2D) and three-dimensional (3D) quantitative structure-activity relationships (QSARs) of 22 thiazolidine analogs with antiproliferative activity expressed as pIC50, which is defined as the negative value of the logarithm of necessary molar concentration of these compounds to cause 50% growth inhibition against melanoma cell lines WM-164, have been studied by using a combined method of the DFT, MM2 and statistics for 2D, as well as the comparative molecular field analysis (CoMFA) method for 3D. The established 2D-QSAR model in training set comprised of random 18 compounds shows not only significant statistical quality, but also predictive ability, with the square of adjusted correlation coefficient (R2A = 0.832) and the square of the cross-validation coefficient (q2 = 0.803). The same model was further applied to predict pIC50 values of the four compounds in the test set, and the resulting R2pred reaching 0.784, further confirms that this 2D-QSAR model has high predictive ability. The 3D-QSAR model also shows good correlative and predictive capabilities in terms of R2 (0.956) and q2 (0.615) obtained from CoMFA model. Further, the robustness of the CoMFA model was verified by bootstrapping analysis (100 runs) with R2bs (0.979) and SDbs (0.056). It is very interesting to find that the results from 2D- and 3D-QSAR analyses accord with each other, and they all show that the steric interaction plays a crucial role in determining the cytotoxicities of the compounds, and that selecting a moderate-size or appropriate-hydrophobicity substituent R as well as increasing the negative charges of C4 on phenyl ring at the same time are advantageous to improving the cytotoxicity. Such results can offer some useful theoretical references for directing the molecular design and understanding the action mechanism of this kind of compound with antiproliferative activity.

  6. Assessment of third ventriculostomy patency with the 3D-SPACE technique: a preliminary multicenter research study.

    PubMed

    Algin, Oktay; Ucar, Murat; Ozmen, Evrim; Borcek, Alp Ozgun; Ozisik, Pinar; Ocakoglu, Gokhan; Tali, E Turgut

    2015-06-01

    The goal of this study was to determine the value of the 3D sampling perfection with application-optimized contrasts using different flip-angle evolutions (3D-SPACE) technique in the evaluation of endoscopic third ventriculostomy (ETV) patency. Twenty-six patients with ETV were examined using 3-T MRI units. Sagittal-plane 3D-SPACE with variant flip-angle mode, 3D T1-weighted (T1W), and 3D heavily T2-weighted (T2W) images were obtained with isotropic voxel sizes. Also, sagittal-axial plane phase-contrast cine (PC)-MR images were obtained. The following findings were evaluated: diameters of stoma and third ventricle, flow-void sign on 3D-SPACE and PC-MR images, integrity of the third ventricle on heavily T2W images, and quantitative PC-MRI parameters of the stoma. Obtained sequences were evaluated singly, in combination with one another, and all together. The mean area, flow, and velocity values measured at the level of stoma in patients with patent stoma were significantly higher than those measured in patients with closed stoma (p < 0.05). There was significant correlation among PC-MRI, 3D-SPACE, and 3D heavily T2W techniques regarding assessment of ETV patency (p < 0.001). The 3D-SPACE technique provided the lowest rate of ambiguous results. The 3D-SPACE technique seems to be the most efficient one for determination of ETV patency. The authors suggest the use of 3D-SPACE as a stand-alone first-line sequence in addition to routine brain MRI protocols in assessing patients with ETV, thereby decreasing scan time and reserving the use of a combination of additional sequences such as PC-MRI and 3D heavily T2W images in suspicious or complex cases.

  7. A Case Study in Astronomical 3D Printing: The Mysterious η Carinae

    NASA Astrophysics Data System (ADS)

    Madura, Thomas I.

    2017-05-01

    Three-dimensional (3D) printing moves beyond interactive 3D graphics and provides an excellent tool for both visual and tactile learners, since 3D printing can now easily communicate complex geometries and full color information. Some limitations of interactive 3D graphics are also alleviated by 3D printable models, including issues of limited software support, portability, accessibility, and sustainability. We describe the motivations, methods, and results of our work on using 3D printing (1) to visualize and understand the η Car Homunculus nebula and central binary system and (2) for astronomy outreach and education, specifically, with visually impaired students. One new result we present is the ability to 3D print full-color models of η Car’s colliding stellar winds. We also demonstrate how 3D printing has helped us communicate our improved understanding of the detailed structure of η Car’s Homunculus nebula and central binary colliding stellar winds, and their links to each other. Attached to this article are full-color 3D printable files of both a red-blue Homunculus model and the η Car colliding stellar winds at orbital phase 1.045. 3D printing could prove to be vital to how astronomer’s reach out and share their work with each other, the public, and new audiences.

  8. From competency to dormancy: a 3D model to study cancer cells and drug responsiveness.

    PubMed

    Fang, Josephine Y; Tan, Shih-Jye; Wu, Yi-Chen; Yang, Zhi; Hoang, Ba X; Han, Bo

    2016-02-04

    The heterogeneous and dynamic tumor microenvironment has significant impact on cancer cell proliferation, invasion, drug response, and is probably associated with entering dormancy and recurrence. However, these complex settings are hard to recapitulate in vitro. In this study, we mimic different restriction forces that tumor cells are exposed to using a physiologically relevant 3D model with tunable mechanical stiffness. Breast cancer MDA-MB-231, colon cancer HCT-116 and pancreatic cancer CFPAC cells embedded in the stiffer gels exhibit a changed morphology and cluster formation, prolonged doubling time, and a slower metabolism rate, recapitulating the pathway from competency to dormancy. Altering environmental restriction allows them to re-enter and exit dormant conditions and change their sensitivities to drugs such as paclitaxol and gemcitabine. Cells surviving drug treatments can still regain competent growth and form tumors in vivo. We have successfully developed an in vitro 3D model to mimic the effects of matrix restriction on tumor cells and this high throughput model can be used to study tumor cellular functions and their drug responses in their different states. This all in one platform may aid effective drug development.

  9. The study of craniofacial growth patterns using 3D laser scanning and geometric morphometrics

    NASA Astrophysics Data System (ADS)

    Friess, Martin

    2006-02-01

    Throughout childhood, braincase and face grow at different rates and therefore exhibit variable proportions and positions relative to each other. Our understanding of the direction and magnitude of these growth patterns is crucial for many ergonomic applications and can be improved by advanced 3D morphometrics. The purpose of this study is to investigate this known growth allometry using 3D imaging techniques. The geometry of the head and face of 840 children, aged 2 to 19, was captured with a laser surface scanner and analyzed statistically. From each scan, 18 landmarks were extracted and registered using General Procrustes Analysis (GPA). GPA eliminates unwanted variation due to position, orientation and scale by applying a least-squares superimposition algorithm to individual landmark configurations. This approach provides the necessary normalization for the study of differences in size, shape, and their interaction (allometry). The results show that throughout adolescence, boys and girls follow a different growth trajectory, leading to marked differences not only in size but also in shape, most notably in relative proportions of the braincase. These differences can be observed during early childhood, but become most noticeable after the age of 13 years, when craniofacial growth in girls slows down significantly, whereas growth in boys continues for at least 3 more years.

  10. Combined 3D-QSAR modeling and molecular docking study on azacycles CCR5 antagonists

    NASA Astrophysics Data System (ADS)

    Ji, Yongjun; Shu, Mao; Lin, Yong; Wang, Yuanqiang; Wang, Rui; Hu, Yong; Lin, Zhihua

    2013-08-01

    The beta chemokine receptor 5 (CCR5) is an attractive target for pharmaceutical industry in the HIV-1, inflammation and cancer therapeutic areas. In this study, we have developed quantitative structure activity relationship (QSAR) models for a series of 41 azacycles CCR5 antagonists using comparative molecular field analysis (CoMFA), comparative molecular similarity indices analysis (CoMSIA), and Topomer CoMFA methods. The cross-validated coefficient q2 values of 3D-QASR (CoMFA, CoMSIA, and Topomer CoMFA) methods were 0.630, 0.758, and 0.852, respectively, the non-cross-validated R2 values were 0.979, 0.978, and 0.990, respectively. Docking studies were also employed to determine the most probable binding mode. 3D contour maps and docking results suggested that bulky groups and electron-withdrawing groups on the core part would decrease antiviral activity. Furthermore, docking results indicated that H-bonds and π bonds were favorable for antiviral activities. Finally, a set of novel derivatives with predicted activities were designed.

  11. Numerical 3D Hydrodynamics Study of Gravitational Instabilities in a Circumbinary Disk

    NASA Astrophysics Data System (ADS)

    Desai, Karna Mahadev; Steiman-Cameron, Thomas Y.; Michael, Scott; Cai, Kai; Durisen, Richard H.

    2016-01-01

    We present a 3D hydrodynamical study of gravitational instabilities (GIs) in a circumbinary protoplanetary disk around a Solar mass star and a brown dwarf companion (0.02 M⊙). GIs can play an important, and at times dominant, role in driving the structural evolution of protoplanetary disks. The reported simulations were performed employing CHYMERA, a radiative 3D hydrodynamics code developed by the Indiana University Hydrodynamics Group. The simulations include disk self-gravity and radiative cooling governed by realistic dust opacities. We examine the role of GIs in modulating the thermodynamic state of the disks, and determine the strengths of GI-induced density waves, non-axisymmetric density structures, radial mass transport, and gravitational torques. The principal goal of this study is to determine how the presence of the companion affects the nature and strength of GIs. Results are compared with a parallel simulation of a protoplanetary disk without the presence of the brown dwarf binary companion. We detect no fragmentation in either disk. A persistent vortex forms in the inner region of both disks. The vortex seems to be stabilized by the presence of the binary companion.

  12. 3-D LTCC microfluidic device as a tool for studying nanoprecipitation

    NASA Astrophysics Data System (ADS)

    Schianti, J. N.; Cerize, N. P. N.; Oliveira, A. M.; Derenzo, S.; Góngora-Rubio, M. R.

    2013-03-01

    Nanoparticles have been used to improve the properties of many cosmetic products, mainly the sunscreens materials using nanoencapsulation or nanosuspensions, improving the contact with active molecules, enhancing the sun protection effect and facilitating formulations in industrial products. Microfluidic devices offer an important possibility in producing nanoparticles in a simple way, in one step bottom up technique, continuum process with low polidispersivity, low consumption of reagents and additives. In this work, we microfabricated a 3-D LTCC microfluidic device to study the nanoprecipitation of Benzophenone-3, used as a sunscreen in pharmaceutical products. It was observed that some parameters influence the particle size related to the total fluid flow on device, the ratio between phases, and the Benzophenone-3 initial concentration. The influence of applied voltages on particle sizes was tested also. For the processing, a high voltage was applied in a Kovar tube inserted in the 3D device. The use of microfluidic device resulted in particles with 100 up to 800 nm of size, with polispersivity index below 0.3 and offering an interesting way to obtain nanoparticles. These studies are still ongoing, but early results indicate the possibility of obtaining B-3 nanostructured material.

  13. 3D-QSAR and docking studies of pentacycloundecylamines at the sigma-1 (σ1) receptor.

    PubMed

    Geldenhuys, Werner J; Novotny, Nicholas; Malan, Sarel F; Van der Schyf, Cornelis J

    2013-03-15

    Pentacycloundecylamine (PCU) derived compounds have been shown to be promising lead structures for the development of novel drug candidates aimed at a variety of neurodegenerative and psychiatric diseases. Here we show for the first time a 3D quantitative structure-activity relationship (3D-QSAR) for a series of aza-PCU-derived compounds with activity at the sigma-1 (σ1) receptor. A comparative molecular field analysis (CoMFA) model was developed with a partial least squares cross validated (q(2)) regression value of 0.6, and a non-cross validated r(2) of 0.9. The CoMFA model was effective at predicting the sigma-1 activities of a test set with an r(2) >0.7. We also describe here the docking of the PCU-derived compounds into a homology model of the sigma-1 (σ1) receptor, which was developed to gain insight into binding of these cage compounds to the receptor. Based on docking studies we evaluated in a [(3)H]pentazocine binding assay an oxa-PCU, NGP1-01 (IC50=1.78μM) and its phenethyl derivative (IC50=1.54μM). Results from these studies can be used to develop new compounds with specific affinity for the sigma-1(σ1) receptor.

  14. An experimental and numerical study of 3-D braided structural textile composites

    SciTech Connect

    Abusafieh, A.; Kalidindi, S.R.; Franco, E.

    1994-12-31

    It has been reported in literature that isostrain models (also known as Fabric Geometry Models) provide good predictions of the elastic moduli of three-dimensional textile composites. This study reports a critical evaluation of the accuracy of the isostrain models by comparing the predictions against experimental measurements as well as finite element simulations of representative unit cells of the 3-D braided composites, over a range of braid angles and volume fractions. The accuracy of the isostrain model is found to be highly sensitive to the braid angles and the fraction of lay-in axial fibers in the composite system. Good correlations between isostrain model predictions of elastic moduli and measurements were observed when the loading direction is oriented along one of the fiber directions and is significantly away from the other fiber systems in the unit cell. In other situations, however, the isostrain model predictions were in significant errors. This study also reports on the influence of various modeling parameters in the development of finite element models for the simulation of the 3-D textile composite unit cells.

  15. Spatial Reasoning and 3D Graphics: A Study of GeoWall-Enhanced Astronomy Instruction

    NASA Astrophysics Data System (ADS)

    Turner, N. E.; Hegarty, M.; Martinez, L. E.

    2006-12-01

    One persistent difficulty many science students face is a lack of accurate, easily manipulated, 3-dimensional mental models of the systems they study. In Introductory Astronomy, students have difficulty conceptualizing the Sun-Earth-Moon system and the geometric relationships that cause the cycle of lunar phases. Advanced computer visualizations exist to alleviate these problems, but they are not equally effective for all students. One factor that might influence their effectiveness is students' existing levels of spatial ability. For example, external visualizations may act as prosthetics for students without well-developed visualization skills or they may favor students who already have highly developed spatial abilities. It is also unclear whether the use of such materials can in any way enhance a student's facility with the creation and manipulation of accurate mental models. We provide analysis of a study of spatial skills in Astronomy students and their relationship to learning about the Moon from a 3D GeoWall animation. We show which spatial skills prove relevant to phases and which students benefit the most from 3D-enhanced instruction.

  16. 3D Numerical Study of the Shear Rheology of a Semi-dilute Viscoelastic Suspension

    NASA Astrophysics Data System (ADS)

    Yang, Mengfei; Krishnan, Sreenath; Shaqfeh, Eric

    2016-11-01

    The stress in suspensions of rigid particles in polymer solutions is of considerable interest in applications such as manufacturing processes and fracturing technologies. Deriving an analytic expression for the material functions of a viscoelastic suspension under shear is difficult due to the nonlinear particle-fluid and particle-particle interactions, and theoretical studies have been limited to dilute suspensions at low shear Weissenberg number (Wi) or low polymer concentrations. Previously, we performed 3D single-particle simulations and showed that the results agreed well with the existing theories in the appropriate parameter regimes. We found that suspensions in constant-viscosity elastic fluids shear-thicken over a range of Wi and their material properties plateau at higher Wi. However, discrepancies between simulation and existing experimental measurements for volume fractions as low as 2.5% suggested that interparticle hydrodynamic interactions could not be neglected. We now present 3D high fidelity numerical simulations of multiple spheres freely suspended in a sheared viscoelastic fluid using an immersed boundary framework to study the relationship between hydrodynamic interactions, particle structure formation, and the bulk rheology of viscoelastic suspensions. We observe that in a non-shear thinning elastic fluid, particles do not "chain", but their interactions induce additional polymer stresses in the fluid which contribute to a stronger particle effect than predicted in the dilute limit.

  17. Study of 3D printing method for GRIN micro-optics devices

    NASA Astrophysics Data System (ADS)

    Wang, P. J.; Yeh, J. A.; Hsu, W. Y.; Cheng, Y. C.; Lee, W.; Wu, N. H.; Wu, C. Y.

    2016-03-01

    Conventional optical elements are based on either refractive or reflective optics theory to fulfill the design specifications via optics performance data. In refractive optical lenses, the refractive index of materials and radius of curvature of element surfaces determine the optical power and wavefront aberrations so that optical performance can be further optimized iteratively. Although gradient index (GRIN) phenomenon in optical materials is well studied for more than a half century, the optics theory in lens design via GRIN materials is still yet to be comprehensively investigated before realistic GRIN lenses are manufactured. In this paper, 3D printing method for manufacture of micro-optics devices with special features has been studied based on methods reported in the literatures. Due to the additive nature of the method, GRIN lenses in micro-optics devices seem to be readily achievable if a design methodology is available. First, derivation of ray-tracing formulae is introduced for all possible structures in GRIN lenses. Optics simulation program is employed for characterization of GRIN lenses with performance data given by aberration coefficients in Zernike polynomial. Finally, a proposed structure of 3D printing machine is described with conceptual illustration.

  18. Study of the kinematic and dynamic characteristics of a wormgear transmission for helicopter applications

    NASA Technical Reports Server (NTRS)

    Sun, D. C.; Yuan, Qin

    1994-01-01

    The first phase of the study of the performance of a wormgear transmission is reported. In this phase the work included the selection of a double-enveloping wormgear type, and its dimensions, suitable for use in helicopter transmissions; the 3-D graphics representation of the selected wormgear using the I-DEAS software; the analysis of the kinematics of meshing; the analysis of load sharing among the meshing teeth; and the implementation of the analyses in a computer program. The report describes the analyses, their results, and the use of the computer programs.

  19. Feasibility study: real-time 3-D ultrasound imaging of the brain.

    PubMed

    Smith, Stephen W; Chu, Kengyeh; Idriss, Salim F; Ivancevich, Nikolas M; Light, Edward D; Wolf, Patrick D

    2004-10-01

    We tested the feasibility of real-time, 3-D ultrasound (US) imaging in the brain. The 3-D scanner uses a matrix phased-array transducer of 512 transmit channels and 256 receive channels operating at 2.5 MHz with a 15-mm diameter footprint. The real-time system scans a 65 degrees pyramid, producing up to 30 volumetric scans per second, and features up to five image planes as well as 3-D rendering, 3-D pulsed-wave and color Doppler. In a human subject, the real-time 3-D scans produced simultaneous transcranial horizontal (axial), coronal and sagittal image planes and real-time volume-rendered images of the gross anatomy of the brain. In a transcranial sheep model, we obtained real-time 3-D color flow Doppler scans and perfusion images using bolus injection of contrast agents into the internal carotid artery.

  20. Human Microtumors Generated in 3D: Novel Tools for Integrated In Situ Studies of Cancer Immunotherapies.

    PubMed

    Hambach, Lothar; Buser, Andreas; Vermeij, Marcel; Pouw, Nadine; van der Kwast, Theo; Goulmy, Els

    2016-01-01

    Cellular immunotherapy targeting human tumor antigens is a promising strategy to treat solid tumors. Yet clinical results of cellular immunotherapy are disappointing. Moreover, the currently available in vitro human tumor models are not designed to study the optimization of T-cell therapies of solid tumors. Here, we describe a novel assay for multiparametric in situ analysis of therapeutic effects on individual human three-dimensional (3D) tumors. In this assay, tumors of several millimeter diameter are generated from human cancer cell lines of different tumor entities in a collagen type I microenvironment. A newly developed approach for efficient morphological analysis reveals that these in vitro tumors resemble many characteristics of the corresponding clinical cancers such as histological features, immunohistochemical staining patterns, distinct tumor growth compartments and heterogeneous protein expression. To assess the response to therapy with tumor antigen specific T-cells, standardized protocols are described to determine T-cell infiltration and tumor destruction by monitoring soluble factors and tumor growth. Human tumors engineered in 3D collagen scaffolds are excellent in vitro surrogates for avascular tumor stages allowing integrated analyses of the antitumor efficacy of cancer specific immunotherapy in situ.

  1. A 3D numerical study of antimicrobial persistence in heterogeneous multi-species biofilms.

    PubMed

    Zhao, Jia; Shen, Ya; Haapasalo, Markus; Wang, Zhejun; Wang, Qi

    2016-03-07

    We develop a 3D hydrodynamic model to investigate the mechanism of antimicrobial persistence in a multi-species oral biofilm and its recovery after being treated by bisbiguanide chlorhexidine gluconate (CHX). In addition to the hydrodynamic transport in the spatially heterogeneous biofilm, the model also includes mechanisms of solvent-biomass interaction, bacterial phenotype conversion, and bacteria-drug interaction. A numerical solver for the model is developed using a second order numerical scheme in 3D space and time and implemented on GPUs for high-performance computing. The model is calibrated against a set of experimental data obtained using confocal laser scan microscopy (CLSM) on multi-species oral biofilms, where a quantitative agreement is reached. Our numerical results reveal that quorum sensing molecules and growth factors in this model are instrumental in biofilm formation and recovery after the antimicrobial treatment. In particular, we show that (i) young biofilms are more susceptible to the antimicrobial treatment than the mature ones, (ii) this phenomenon is strongly correlated with volume fractions of the persister and EPS in the biofilm being treated. This suggests that antimicrobial treatment should be best administered to biofilms earlier before they mature to produce a thick protective EPS layer. In addition, the numerical study also indicates that an antimicrobial effect can be achieved should a proper mechanism be devised to minimize the conversion of susceptible bacteria to persisters during and even after the treatment.

  2. Computational Study of 3-D Hot-Spot Initiation in Shocked Insensitive High-Explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.

    2011-06-01

    High explosive shock sensitivity is controlled by a combination of mechanical response, thermal properties, and chemical properties. The interplay of these physical phenomena in realistic condensed energetic materials is currently lacking. A multiscale computational framework is developed investigating hot spot (void) ignition in a single crystal of an insensitive HE, TATB. Atomistic MD simulations are performed to provide the key chemical reactions and these reaction rates are used in 3-D multiphysics simulations. The multiphysics code, ALE3D, is linked to the chemistry software, Cheetah, and a three-way coupled approach is pursued including hydrodynamics, thermal and chemical analyses. A single spherical air bubble is embedded in the insensitive HE and its collapse due to shock initiation is evolved numerically in time; while the ignition processes due chemical reactions are studied. Our current predictions showcase several interesting features regarding hot spot dynamics including the formation of a ``secondary'' jet. Results obtained with hydro-thermo-chemical processes leading to ignition growth will be discussed for various pore sizes and different shock pressures. LLNL-ABS-471438. This work performed under the auspices of the U.S. Department of Energy by LLNL under Contract DE-AC52-07NA27344.

  3. A biofidelic 3D culture model to study the development of brain cellular systems

    PubMed Central

    Ren, M.; Du, C.; Herrero Acero, E.; Tang-Schomer, M. D.; Özkucur, N.

    2016-01-01

    Little is known about how cells assemble as systems during corticogenesis to generate collective functions. We built a neurobiology platform that consists of fetal rat cerebral cortical cells grown within 3D silk scaffolds (SF). Ivermectin (Ivm), a glycine receptor (GLR) agonist, was used to modulate cell resting membrane potential (Vmem) according to methods described in a previous work that implicated Ivm in the arrangement and connectivity of cortical cell assemblies. The cells developed into distinct populations of neuroglial stem/progenitor cells, mature neurons or epithelial-mesenchymal cells. Importantly, the synchronized electrical activity in the newly developed cortical assemblies could be recorded as local field potential (LFP) measurements. This study therefore describes the first example of the development of a biologically relevant cortical plate assembly outside of the body. This model provides i) a preclinical basis for engineering cerebral cortex tissue autografts and ii) a biofidelic 3D culture model for investigating biologically relevant processes during the functional development of cerebral cortical cellular systems. PMID:27112667

  4. Liner Optimization Studies Using the Ducted Fan Noise Prediction Code TBIEM3D

    NASA Technical Reports Server (NTRS)

    Dunn, M. H.; Farassat, F.

    1998-01-01

    In this paper we demonstrate the usefulness of the ducted fan noise prediction code TBIEM3D as a liner optimization design tool. Boundary conditions on the interior duct wall allow for hard walls or a locally reacting liner with axially segmented, circumferentially uniform impedance. Two liner optimization studies are considered in which farfield noise attenuation due to the presence of a liner is maximized by adjusting the liner impedance. In the first example, the dependence of optimal liner impedance on frequency and liner length is examined. Results show that both the optimal impedance and attenuation levels are significantly influenced by liner length and frequency. In the second example, TBIEM3D is used to compare radiated sound pressure levels between optimal and non-optimal liner cases at conditions designed to simulate take-off. It is shown that significant noise reduction is achieved for most of the sound field by selecting the optimal or near optimal liner impedance. Our results also indicate that there is relatively large region of the impedance plane over which optimal or near optimal liner behavior is attainable. This is an important conclusion for the designer since there are variations in liner characteristics due to manufacturing imprecisions.

  5. 3-D Parallel, Object-Oriented, Hybrid, PIC Code for Ion Ring Studies

    NASA Astrophysics Data System (ADS)

    Omelchenko, Y. A.

    1997-08-01

    The 3-D hybrid, Particle-in-Cell (PIC) code, FLAME has been developed to study low-frequency, large orbit plasmas in realistic cylindrical configurations. FLAME assumes plasma quasineutrality and solves the Maxwell equations with displacement current neglected. The electron component is modeled as a massless fluid and all ion components are represented by discrete macro-particles. The poloidal discretization is done by a finite-difference staggered grid method. FFT is applied in the azimuthal direction. A substantial reduction of CPU time is achieved by enabling separate time advances of background and beam particle species in the time-averaged fields. The FLAME structure follows the guidelines of object-oriented programming. Its C++ class hierarchy comprises the Utility, Geometry, Particle, Grid and Distributed base class packages. The latter encapsulates implementation of concurrent grid and particle algorithms. The particle and grid data interprocessor communications are unified and designed to be independent of both the underlying message-passing library and the actual poloidal domain decomposition technique (FFT's are local). Load balancing concerns are addressed by using adaptive domain partitions to account for nonuniform spatial distributions of particle objects. The results of 2-D and 3-D FLAME simulations in support of the FIREX program at Cornell are presented.

  6. Evaluation of surface roughness of the bracket slot floor--a 3D perspective study.

    PubMed

    Agarwal, Chetankumar O; Vakil, Ketan K; Mahamuni, Avinash; Tekale, Pawankumar Dnyandeo; Gayake, Prasad V; Vakil, Jeegar K

    2016-01-01

    An important constituent of an orthodontic appliance is orthodontic brackets. It is either the bracket or the archwire that slides through the bracket slot, during sliding mechanics. Overcoming the friction between the two surfaces demands an important consideration in an appliance design. The present study investigated the surface roughness of four different commercially available stainless steel brackets. All tests were carried out to analyse quantitatively the morphological surface of the bracket slot floor with the help of scanning electron microscope (SEM) machine and to qualitatively analyse the average surface roughness (Sa) of the bracket slot floor with the help of a three-dimensional (3D) non-contact optical surface profilometer machine. The SEM microphotographs were evaluated with the help of visual analogue scale, the surface roughness for group A = 0-very rough surface, group C = 1--rough surface, group B = 2--smooth surface, and group D = 3-very smooth surface. Surface roughness evaluation with the 3D non-contact optical surface profilometer machine was highest for group A, followed by group C, group B and group D. Groups B and D provided smooth surface roughness; however, group D had the very smooth surface with values 0.74 and 0.75 for mesial and distal slots, respectively. Evaluation of surface roughness of the bracket slot floor with both SEM and profilometer machine led to the conclusion that the average surface roughness was highest for group A, followed by group C, group B and group D.

  7. Shear Behavior of 3D Woven Hollow Integrated Sandwich Composites: Experimental, Theoretical and Numerical Study

    NASA Astrophysics Data System (ADS)

    Zhou, Guangming; Liu, Chang; Cai, Deng'an; Li, Wenlong; Wang, Xiaopei

    2016-11-01

    An experimental, theoretical and numerical investigation on the shear behavior of 3D woven hollow integrated sandwich composites was presented in this paper. The microstructure of the composites was studied, then the shear modulus and load-deflection curves were obtained by double lap shear tests on the specimens in two principal directions of the sandwich panels, called warp and weft. The experimental results showed that the shear modulus of the warp was higher than that of the weft and the failure occurred in the roots of piles. A finite element model was established to predict the shear behavior of the composites. The simulated results agreed well with the experimental data. Simultaneously, a theoretical method was developed to predict the shear modulus. By comparing with the experimental data, the accuracy of the theoretical method was verified. The influence of structural parameters on shear modulus was also discussed. The higher yarn number, yarn density and dip angle of the piles could all improve the shear modulus of 3D woven hollow integrated sandwich composites at different levels, while the increasing height would decrease the shear modulus.

  8. Aeroacoustic Simulations of a Nose Landing Gear with FUN3D: A Grid Refinement Study

    NASA Technical Reports Server (NTRS)

    Vatsa, Veer N.; Khorrami, Mehdi R.; Lockard, David P.

    2017-01-01

    A systematic grid refinement study is presented for numerical simulations of a partially-dressed, cavity-closed (PDCC) nose landing gear configuration that was tested in the University of Florida's open-jet acoustic facility known as the UFAFF. The unstructured-grid flow solver FUN3D is used to compute the unsteady flow field for this configuration. Mixed-element grids generated using the Pointwise (Registered Trademark) grid generation software are used for numerical simulations. Particular care is taken to ensure quality cells and proper resolution in critical areas of interest in an effort to minimize errors introduced by numerical artifacts. A set of grids was generated in this manner to create a family of uniformly refined grids. The finest grid was then modified to coarsen the wall-normal spacing to create a grid suitable for the wall-function implementation in FUN3D code. A hybrid Reynolds-averaged Navier-Stokes/large eddy simulation (RANS/LES) turbulence modeling approach is used for these simulations. Time-averaged and instantaneous solutions obtained on these grids are compared with the measured data. These CFD solutions are used as input to a FfowcsWilliams-Hawkings (FW-H) noise propagation code to compute the farfield noise levels. The agreement of the computed results with the experimental data improves as the grid is refined.

  9. Hologram and 3D-quantitative structure toxicity relationship studies of azo dyes.

    PubMed

    Pasha, F A; Muddassar, Muhammad; Chung, Hwan Won; Cho, Seung Joo; Cho, Hoon

    2008-04-01

    Amino azobenzenes are important dyes in the food and textile industry but their application is limited due to their mutagenicity. Computational modeling techniques were used to help understand the factors responsible for mutagenicity, and several quantitative structure toxicity relationship (QSTR) models have been derived. HQSTR (hologram QSTR) analyses indicated that different substituents at sites on both rings contribute to mutagenicity. Fragment parameters such as bond (B) and connectivity(C), as well as donor-acceptor (DA)-based model provide significant results (q(2) = 0.59, r(2) = 0.92, r(2)predictive = 0.63) explaining these harmful effect. HQSTR results indicated that a bulky group at ring "Y" and small group at ring "X" might help to decrease mutagenicity. 3D-QSTR based on comparative molecular field analyses (CoMFA) and comparative molecular similarity index analyses (CoMSIA) are also in agreement with HQSTR. The 3D QSTR studies reveal that steric and electrostatic field effects have a strong relationship with mutagenicity (for CoMFA: q(2) = 0.51, r(2 )= 0.95, r(2) predictive = 0.65 and for CoMSIA: q(2) = 0.51, r(2) = 0.93 and r(2) predictive = 0.84). In summary, negative groups and steric bulk at ring "Y" and small groups at carbon-3 of ring "X" might be helpful in reducing the mutagenicity of azo dyes.

  10. A biofidelic 3D culture model to study the development of brain cellular systems.

    PubMed

    Ren, M; Du, C; Herrero Acero, E; Tang-Schomer, M D; Özkucur, N

    2016-04-26

    Little is known about how cells assemble as systems during corticogenesis to generate collective functions. We built a neurobiology platform that consists of fetal rat cerebral cortical cells grown within 3D silk scaffolds (SF). Ivermectin (Ivm), a glycine receptor (GLR) agonist, was used to modulate cell resting membrane potential (Vmem) according to methods described in a previous work that implicated Ivm in the arrangement and connectivity of cortical cell assemblies. The cells developed into distinct populations of neuroglial stem/progenitor cells, mature neurons or epithelial-mesenchymal cells. Importantly, the synchronized electrical activity in the newly developed cortical assemblies could be recorded as local field potential (LFP) measurements. This study therefore describes the first example of the development of a biologically relevant cortical plate assembly outside of the body. This model provides i) a preclinical basis for engineering cerebral cortex tissue autografts and ii) a biofidelic 3D culture model for investigating biologically relevant processes during the functional development of cerebral cortical cellular systems.

  11. A small animal image guided irradiation system study using 3D dosimeters

    NASA Astrophysics Data System (ADS)

    Qian, Xin; Admovics, John; Wuu, Cheng-Shie

    2015-01-01

    In a high resolution image-guided small animal irradiation platform, a cone beam computed tomography (CBCT) is integrated with an irradiation unit for precise targeting. Precise quality assurance is essential for both imaging and irradiation components. The conventional commissioning techniques with films face major challenges due to alignment uncertainty and labour intensive film preparation and scanning. In addition, due to the novel design of this platform the mouse stage rotation for CBCT imaging is perpendicular to the gantry rotation for irradiation. Because these two rotations are associated with different mechanical systems, discrepancy between rotation isocenters exists. In order to deliver x-ray precisely, it is essential to verify coincidence of the imaging and the irradiation isocenters. A 3D PRESAGE dosimeter can provide an excellent tool for checking dosimetry and verifying coincidence of irradiation and imaging coordinates in one system. Dosimetric measurements were performed to obtain beam profiles and percent depth dose (PDD). Isocentricity and coincidence of the mouse stage and gantry rotations were evaluated with starshots acquired using PRESAGE dosimeters. A single PRESAGE dosimeter can provide 3 -D information in both geometric and dosimetric uncertainty, which is crucial for translational studies.

  12. Reliability and validity of the tritrac-R3D accelerometer during backpacking: a case study.

    PubMed

    DeVoe, D; Dalleck, L

    2001-08-01

    This study investigated the utility of the Tritrac-R3D accelerometer as a reliable and valid instrument in the quantification of physical activity while backpacking in the field and to evaluate heart-rate responses and oxygen consumption to assess the feasibility of using the Tritrac-R3D to estimate caloric expenditure. Two 7-day backpacking expeditions were conducted in two consecutive years by a single subject at Grand Canyon National Park, Arizona. The average hiking heart rate ranged front 60% to 77% HRmax during the expeditions. The average rate of estimated caloric cost ranged from 6.8 to 11.7 kcals x min.(-1) (equivalent to 408 to 702 kcals x hr.(-1)), indicating a relatively moderate to high level of exertion. The Tritrac had adequate consistency and reliability in the field between the two expeditions in recorded activity counts. The Tritrac underestimated caloric expenditure during backpacking with changes in terrain, and hiking speed contributed to even greater disparity in accuracy.

  13. RF study and 3-D simulations of a side-coupling thermionic RF-gun

    NASA Astrophysics Data System (ADS)

    Rimjaem, S.; Kusoljariyakul, K.; Thongbai, C.

    2014-02-01

    A thermionic RF-gun for generating ultra-short electron bunches was optimized, developed and used as a source at a linac-based THz radiation research laboratory of the Plasma and Beam Physics Research Facility, Chiang Mai University, Thailand. The RF-gun is a π/2-mode standing wave structure, which consists of two S-band accelerating cells and a side-coupling cavity. The 2856 MHz RF wave is supplied from an S-band klystron to the gun through the waveguide input-port at the cylindrical wall of the second cell. A fraction of the RF power is coupled from the second cell to the first one via a side-coupling cavity. Both the waveguide input-port and the side-coupling cavity lead to an asymmetric geometry of the gun. RF properties and electromagnetic field distributions inside the RF-gun were studied and numerically simulated by using computer codes SUPERFISH 7.19 and CST Microwave Studio 2012©. RF characterizations and tunings of the RF-gun were performed to ensure the reliability of the gun operation. The results from 3D simulations and measurements are compared and discussed in this paper. The influence of asymmetric field distributions inside the RF-gun on the electron beam properties was investigated via 3D beam dynamics simulations. A change in the coupling-plane of the side-coupling cavity is suggested to improve the gun performance.

  14. A comparative study of bio-inspired protective scales using 3D printing and mechanical testing.

    PubMed

    Martini, Roberto; Balit, Yanis; Barthelat, Francois

    2017-03-16

    Flexible natural armors from fish, alligators or armadillo are attracting an increasing amount of attention for their unique combinations of hardness, flexibility and light weight. The extreme contrast of stiffness between hard scales and surrounding soft tissues gives rise to unusual and attractive mechanisms, which now serve as models for the design of bio-inspired armors. Despite this growing interest, there is little guideline for the choice of materials, optimum thickness, size, shape and arrangement for the protective scales. In this work, we explore how the geometry and arrangement of hard scales can be tailored to promote scale-scale interactions. We use 3D printing to fabricate arrays of scales with increasingly complex geometries and arrangements, from simple squares with no overlap to complex ganoid-scales with overlaps and interlocking features. We performed puncture tests and flexural tests on each of the 3D printed materials, and we report the puncture resistance - compliance characteristics of each design on an Ashby chart. The interactions between the scales can significantly increase the resistance to puncture, and these interactions can be maximized by tuning the geometry and arrangement of the scales. Interestingly, the designs that offer the best combinations of puncture resistance and flexural compliance are similar to the geometry and arrangement of natural teleost and ganoid scales, which suggests that natural evolution has shaped these systems to maximize flexible protection. This study yields new insights into the mechanisms of natural dermal armor, and also suggests new designs for personal protective systems.

  15. VA-086 methacrylate gelatine photopolymerizable hydrogels: A parametric study for highly biocompatible 3D cell embedding.

    PubMed

    Occhetta, Paola; Visone, Roberta; Russo, Laura; Cipolla, Laura; Moretti, Matteo; Rasponi, Marco

    2015-06-01

    The ability to replicate in vitro the native extracellular matrix (ECM) features and to control the three-dimensional (3D) cell organization plays a fundamental role in obtaining functional engineered bioconstructs. In tissue engineering (TE) applications, hydrogels have been successfully implied as biomatrices for 3D cell embedding, exhibiting high similarities to the natural ECM and holding easily tunable mechanical properties. In the present study, we characterized a promising photocrosslinking process to generate cell-laden methacrylate gelatin (GelMA) hydrogels in the presence of VA-086 photoinitiator using a ultraviolet LED source. We investigated the influence of prepolymer concentration and light irradiance on mechanical and biomimetic properties of resulting hydrogels. In details, the increasing of gelatin concentration resulted in enhanced rheological properties and shorter polymerization time. We then defined and validated a reliable photopolymerization protocol for cell embedding (1.5% VA-086, LED 2 mW/cm2) within GelMA hydrogels, which demonstrated to support bone marrow stromal cells viability when cultured up to 7 days. Moreover, we showed how different mechanical properties, derived from different crosslinking parameters, strongly influence cell behavior. In conclusion, this protocol can be considered a versatile tool to obtain biocompatible cell-laden hydrogels with properties easily adaptable for different TE applications.

  16. A 3-D Darwin EM Hybrid PIC Code for Ion Ring Studies

    NASA Astrophysics Data System (ADS)

    Omelchenko, Yu. A.; Sudan, R. N.

    1997-05-01

    A new, 3-D electromagnetic (EM), hybrid, particle-in-cell (PIC) code, FLAME has been constructed to study low-frequency, large orbit plasmas in realistic cylindrical configurations. The stability and equilibrium of strong ion rings in magnetized plasmas are the first issues suitable for its application. In FLAME the EM-field is governed by Maxwell's equations in the quasi-neutral Darwin approximation (with displacement current neglected), the ion components are represented by discrete macro-particles, and the plasma electrons are modeled as a massless cold fluid. All physical quantities are expanded into finite Fourier series in the azimuthal (θ) direction. The discretization in the poloidal (r,z) plane is done by a finite-difference staggered grid method. The electron fluid equations include a finite scalar resistivity and macro-particles experience slowing-down collisions. A substantial reduction of computation time is achieved by enabling separate time advances of background and beam particle species in the time-averaged fields. FLAME has been optimized to run on parallel, MIMD systems, and has an object-oriented (C++) structure. The results of normal mode tests intended to verify the code ability to correctly model plasma phenomena are presented. We also investigate in 3-D the injection of a powerful annular ion beam into a plasma immersed in a magnetic cusp followed by an axially ramped applied magnetic field. A nonaxisymmetric perturbation is applied to the magnetic field and its effect on ion ring formation is analysed.

  17. Numerical and experimental study of gas flows in 2D and 3D microchannels

    NASA Astrophysics Data System (ADS)

    Guo, Xiaohui; Huang, Chihyung; Alexeenko, Alina; Sullivan, John

    2008-02-01

    In the experiments conducted at Purdue, the air flow in rectangular cross-section microchannels was investigated using pressure sensitive paint. The high resolution pressure measurements were obtained for inlet-to-outlet pressure ratios from 1.76 to 20 with the outlet Knudsen numbers in the range from 0.003 to 0.4 based on the hydraulic diameter of 151.7 µm and the length-to-height ratio of about 50. In the slip flow regime, the air flow was simulated by the 2D and 3D Navier-Stokes equations with no-slip and slip boundary conditions. For various pressure ratios, the entrance flow development, compressibility and rarefaction effects were observed in both experiments and numerical simulations. It was found that the accurate modeling of gas flows in finite-length channels requires the inlet and outlet reservoirs to be included in computations. Effects of entrance geometry on the friction factor were studied for 3D cases. In both experiments and numerical modeling, significant pressure drop was found starting at the inlet chamber. The numerical modeling also predicted an apparent temperature drop at the channel exit.

  18. Synthesis, in vitro antitubercular activity and 3D-QSAR study of 1,4-dihydropyridines.

    PubMed

    Manvar, Atul T; Pissurlenkar, Raghuvir R S; Virsodia, Vijay R; Upadhyay, Kuldip D; Manvar, Dinesh R; Mishra, Arun K; Acharya, Hrishikesh D; Parecha, Alpesh R; Dholakia, Chintan D; Shah, Anamik K; Coutinho, Evans C

    2010-05-01

    In continuation of our research program on new antitubercular agents, this article is a report of the synthesis of 97 various symmetrical, unsymmetrical, and N-substituted 1,4-dihydropyridines. The synthesized molecules were tested for their activity against M. tuberculosis H (37)Rv strain with rifampin as the standard drug. The percentage inhibition was found in the range 3-93%. In an effort to understand the relationship between structure and activity, 3D-QSAR studies were also carried out on a subset that is representative of the molecules synthesized. For the generation of the QSAR models, a training set of 35 diverse molecules representing the synthesized molecules was utilized. The molecules were aligned using the atom-fit technique. The CoMFA and CoMSIA models generated on the molecules aligned by the atom-fit method show a correlation coefficient (r (2)) of 0.98 and 0.95 with cross-validated r (2)(q (2)) of 0.56 and 0.62, respectively. The 3D-QSAR models were externally validated against a test set of 19 molecules (aligned previously with the training set) for which the predictive r(2)(r(r)(pred)) is recorded as 0.74 and 0.69 for the CoMFA and CoMSIA models, respectively. The models were checked for chance correlation through y-scrambling. The QSAR models revealed the importance of the conformational flexibility of the substituents in antitubercular activity.

  19. Procedural 3d Modelling for Traditional Settlements. The Case Study of Central Zagori

    NASA Astrophysics Data System (ADS)

    Kitsakis, D.; Tsiliakou, E.; Labropoulos, T.; Dimopoulou, E.

    2017-02-01

    Over the last decades 3D modelling has been a fast growing field in Geographic Information Science, extensively applied in various domains including reconstruction and visualization of cultural heritage, especially monuments and traditional settlements. Technological advances in computer graphics, allow for modelling of complex 3D objects achieving high precision and accuracy. Procedural modelling is an effective tool and a relatively novel method, based on algorithmic modelling concept. It is utilized for the generation of accurate 3D models and composite facade textures from sets of rules which are called Computer Generated Architecture grammars (CGA grammars), defining the objects' detailed geometry, rather than altering or editing the model manually. In this paper, procedural modelling tools have been exploited to generate the 3D model of a traditional settlement in the region of Central Zagori in Greece. The detailed geometries of 3D models derived from the application of shape grammars on selected footprints, and the process resulted in a final 3D model, optimally describing the built environment of Central Zagori, in three levels of Detail (LoD). The final 3D scene was exported and published as 3D web-scene which can be viewed with 3D CityEngine viewer, giving a walkthrough the whole model, same as in virtual reality or game environments. This research work addresses issues regarding textures' precision, LoD for 3D objects and interactive visualization within one 3D scene, as well as the effectiveness of large scale modelling, along with the benefits and drawbacks that derive from procedural modelling techniques in the field of cultural heritage and more specifically on 3D modelling of traditional settlements.

  20. Test Problems for Reactive Flow HE Model in the ALE3D Code and Limited Sensitivity Study

    SciTech Connect

    Gerassimenko, M.

    2000-03-01

    We document quick running test problems for a reactive flow model of HE initiation incorporated into ALE3D. A quarter percent change in projectile velocity changes the outcome from detonation to HE burn that dies down. We study the sensitivity of calculated HE behavior to several parameters of practical interest where modeling HE initiation with ALE3D.

  1. 3D-2D ultrasound feature-based registration for navigated prostate biopsy: a feasibility study.

    PubMed

    Selmi, Sonia Y; Promayon, Emmanuel; Troccaz, Jocelyne

    2016-08-01

    The aim of this paper is to describe a 3D-2D ultrasound feature-based registration method for navigated prostate biopsy and its first results obtained on patient data. A system combining a low-cost tracking system and a 3D-2D registration algorithm was designed. The proposed 3D-2D registration method combines geometric and image-based distances. After extracting features from ultrasound images, 3D and 2D features within a defined distance are matched using an intensity-based function. The results are encouraging and show acceptable errors with simulated transforms applied on ultrasound volumes from real patients.

  2. Non-Newtonian Fluids Spreading with Surface Tension Effect: 3D Numerical Analysis Using FEM and Experimental Study

    NASA Astrophysics Data System (ADS)

    Hu, Bin; Kieweg, Sarah

    2010-11-01

    Gravity-driven thin film flow down an incline is studied for optimal design of polymeric drug delivery vehicles, such as anti-HIV topical microbicides. We develop a 3D FEM model using non-Newtonian mechanics to model the flow of gels in response to gravity, surface tension and shear-thinning. Constant volume setup is applied within the lubrication approximation scope. The lengthwise profiles of the 3D model agree with our previous 2D finite difference model, while the transverse contact line patterns of the 3D model are compared to the experiments. With incorporation of surface tension, capillary ridges are observed at the leading front in both 2D and 3D models. Previously published studies show that capillary ridge can amplify the fingering instabilities in transverse direction. Sensitivity studies (2D & 3D) and experiments are carried out to describe the influence of surface tension and shear-thinning on capillary ridge and fingering instabilities.

  3. 3D Human Motion Editing and Synthesis: A Survey

    PubMed Central

    Wang, Xin; Chen, Qiudi; Wang, Wanliang

    2014-01-01

    The ways to compute the kinematics and dynamic quantities of human bodies in motion have been studied in many biomedical papers. This paper presents a comprehensive survey of 3D human motion editing and synthesis techniques. Firstly, four types of methods for 3D human motion synthesis are introduced and compared. Secondly, motion capture data representation, motion editing, and motion synthesis are reviewed successively. Finally, future research directions are suggested. PMID:25045395

  4. Exploring the surface reactivity of 3d metal endofullerenes: a density-functional theory study.

    PubMed

    Estrada-Salas, Rubén E; Valladares, Ariel A

    2009-09-24

    Changes in the preferential sites of electrophilic, nucleophilic, and radical attacks on the pristine C60 surface with endohedral doping using 3d transition metal atoms were studied via two useful reactivity indices, namely the Fukui functions and the molecular electrostatic potential. Both of these were calculated at the density functional BPW91 level of theory with the DNP basis set. Our results clearly show changes in the preferential reactivity sites on the fullerene surface when it is doped with Mn, Fe, Co, or Ni atoms, whereas there are no significant changes in the preferential reactivity sites on the C60 surface upon endohedral doping with Cu and Zn atoms. Electron affinities (EA), ionization potentials (IP), and HOMO-LUMO gaps (Eg) were also calculated to complete the study of the endofullerene's surface reactivity. These findings provide insight into endofullerene functionalization, an important issue in their application.

  5. Biological Evaluation and 3D-QSAR Studies of Curcumin Analogues as Aldehyde Dehydrogenase 1 Inhibitors

    PubMed Central

    Wang, Hui; Du, Zhiyun; Zhang, Changyuan; Tang, Zhikai; He, Yan; Zhang, Qiuyan; Zhao, Jun; Zheng, Xi

    2014-01-01

    Aldehyde dehydrogenase 1 (ALDH1) is reported as a biomarker for identifying some cancer stem cells, and down-regulation or inhibition of the enzyme can be effective in anti-drug resistance and a potent therapeutic for some tumours. In this paper, the inhibitory activity, mechanism mode, molecular docking and 3D-QSAR (three-dimensional quantitative structure activity relationship) of curcumin analogues (CAs) against ALDH1 were studied. Results demonstrated that curcumin and CAs possessed potent inhibitory activity against ALDH1, and the CAs compound with ortho di-hydroxyl groups showed the most potent inhibitory activity. This study indicates that CAs may represent a new class of ALDH1 inhibitor. PMID:24840575

  6. Effect of Single-Electron Interface Trapping in Decanano MOSFETs: A 3D Atomistic Simulation Study

    NASA Technical Reports Server (NTRS)

    Asenov, Asen; Balasubramaniam, R.; Brown, A. R.; Davies, J. H.

    2000-01-01

    We study the effect of trapping/detrapping of a single-electron in interface states in the channel of n-type MOSFETs with decanano dimensions using 3D atomistic simulation techniques. In order to highlight the basic dependencies, the simulations are carried out initially assuming continuous doping charge, and discrete localized charge only for the trapped electron. The dependence of the random telegraph signal (RTS) amplitudes on the device dimensions and on the position of the trapped charge in the channel are studied in detail. Later, in full-scale, atomistic simulations assuming discrete charge for both randomly placed dopants and the trapped electron, we highlight the importance of current percolation and of traps with strategic position where the trapped electron blocks a dominant current path.

  7. The Development of a Glucose Dehydrogenase 3D-Printed Glucose Sensor: A Proof-of-Concept Study.

    PubMed

    Adams, Anngela; Malkoc, Aldin; La Belle, Jeffrey T

    2017-06-01

    This work represents a preliminary proof-of-concept design and verification of a 3D-printed glucose biosensor. The proof of concept presented is the first example of glucose dehydrogenase sensor fabricated by a 3D-printer while maintaining similar features to current lab-industry standards. The sensor was verified to detect physiological glucose concentrations between 0 and 400 mg/dL with a linear coefficient as high as .97. This study showed that it was possible to use 3D-printed technology to create a biosensor sensitive to glucose detection. As availability and functionality of 3D-printers expands, this technology has the potential to be an option for diabetes management. This preliminary study shows that the 3D-printed sensor platform holds promise for sensitive glucose detection.

  8. Are there side effects to watching 3D movies? A prospective crossover observational study on visually induced motion sickness.

    PubMed

    Solimini, Angelo G

    2013-01-01

    The increasing popularity of commercial movies showing three dimensional (3D) images has raised concern about possible adverse side effects on viewers. A prospective carryover observational study was designed to assess the effect of exposure (3D vs. 2D movie views) on self reported symptoms of visually induced motion sickness. The standardized Simulator Sickness Questionnaire (SSQ) was self administered on a convenience sample of 497 healthy adult volunteers before and after the vision of 2D and 3D movies. Viewers reporting some sickness (SSQ total score>15) were 54.8% of the total sample after the 3D movie compared to 14.1% of total sample after the 2D movie. Symptom intensity was 8.8 times higher than baseline after exposure to 3D movie (compared to the increase of 2 times the baseline after the 2D movie). Multivariate modeling of visually induced motion sickness as response variables pointed out the significant effects of exposure to 3D movie, history of car sickness and headache, after adjusting for gender, age, self reported anxiety level, attention to the movie and show time. Seeing 3D movies can increase rating of symptoms of nausea, oculomotor and disorientation, especially in women with susceptible visual-vestibular system. Confirmatory studies which include examination of clinical signs on viewers are needed to pursue a conclusive evidence on the 3D vision effects on spectators.

  9. Are There Side Effects to Watching 3D Movies? A Prospective Crossover Observational Study on Visually Induced Motion Sickness

    PubMed Central

    Solimini, Angelo G.

    2013-01-01

    Background The increasing popularity of commercial movies showing three dimensional (3D) images has raised concern about possible adverse side effects on viewers. Methods and Findings A prospective carryover observational study was designed to assess the effect of exposure (3D vs. 2D movie views) on self reported symptoms of visually induced motion sickness. The standardized Simulator Sickness Questionnaire (SSQ) was self administered on a convenience sample of 497 healthy adult volunteers before and after the vision of 2D and 3D movies. Viewers reporting some sickness (SSQ total score>15) were 54.8% of the total sample after the 3D movie compared to 14.1% of total sample after the 2D movie. Symptom intensity was 8.8 times higher than baseline after exposure to 3D movie (compared to the increase of 2 times the baseline after the 2D movie). Multivariate modeling of visually induced motion sickness as response variables pointed out the significant effects of exposure to 3D movie, history of car sickness and headache, after adjusting for gender, age, self reported anxiety level, attention to the movie and show time. Conclusions Seeing 3D movies can increase rating of symptoms of nausea, oculomotor and disorientation, especially in women with susceptible visual-vestibular system. Confirmatory studies which include examination of clinical signs on viewers are needed to pursue a conclusive evidence on the 3D vision effects on spectators. PMID:23418530

  10. Feasibility of a 3D human airway epithelial model to study respiratory absorption.

    PubMed

    Reus, Astrid A; Maas, Wilfred J M; Jansen, Harm T; Constant, Samuel; Staal, Yvonne C M; van Triel, Jos J; Kuper, C Frieke

    2014-03-01

    The respiratory route is an important portal for human exposure to a large variety of substances. Consequently, there is an urgent need for realistic in vitro strategies for evaluation of the absorption of airborne substances with regard to safety and efficacy assessment. The present study investigated feasibility of a 3D human airway epithelial model to study respiratory absorption, in particular to differentiate between low and high absorption of substances. Bronchial epithelial models (MucilAir™), cultured at the air-liquid interface, were exposed to eight radiolabeled model substances via the apical epithelial surface. Absorption was evaluated by measuring radioactivity in the apical compartment, the epithelial cells and the basolateral culture medium. Antipyrine, caffeine, naproxen and propranolol were highly transported across the epithelial cell layer (>5%), whereas atenolol, mannitol, PEG-400 and insulin were limitedly transported (<5%). Results indicate that the 3D human airway epithelial model used in this study is able to differentiate between substances with low and high absorption. The intra-experimental reproducibility of the results was considered adequate based on an average coefficient of variation (CV) of 15%. The inter-experimental reproducibility of highly absorbed compounds was in a similar range (CV of 15%), but this value was considerably higher for those compounds that were limitedly absorbed. No statistical significant differences between different donors and experiments were observed. The present study provides a simple method transposable in any lab, which can be used to rank the absorption of chemicals and pharmaceuticals, and is ready for further validation with respect to reproducibility and capacity of the method to predict respiratory transport in humans.

  11. Study on embedding fiber Bragg grating sensor into the 3D printing structure for health monitoring

    NASA Astrophysics Data System (ADS)

    Li, Ruiya; Tan, Yuegang; Zhou, Zude; Fang, Liang; Chen, Yiyang

    2016-10-01

    3D printing technology is a rapidly developing manufacturing technology, which is known as a core technology in the third industrial revolution. With the continuous improvement of the application of 3D printing products, the health monitoring of the 3D printing structure is particularly important. Fiber Bragg grating (FBG) sensing technology is a new type of optical sensing technology with unique advantages comparing to traditional sensing technology, and it has great application prospects in structural health monitoring. In this paper, the FBG sensors embedded in the internal structure of the 3D printing were used to monitor the static and dynamic strain variation of 3D printing structure during loading process. The theoretical result and experimental result has good consistency and the characteristic frequency detected by FBG sensor is consistent with the testing results of traditional accelerator in the dynamic experiment. The results of this paper preliminary validate that FBG embedded in the 3D printing structure can effectively detecting the static and dynamic stain change of the 3D printing structure, which provide some guidance for the health monitoring of 3D printing structure.

  12. 3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study.

    PubMed

    Dolz, Jose; Desrosiers, Christian; Ben Ayed, Ismail

    2017-04-24

    This study investigates a 3D and fully convolutional neural network (CNN) for subcortical brain structure segmentation in MRI. 3D CNN architectures have been generally avoided due to their computational and memory requirements during inference. We address the problem via small kernels, allowing deeper architectures. We further model both local and global context by embedding intermediate-layer outputs in the final prediction, which encourages consistency between features extracted at different scales and embeds fine-grained information directly in the segmentation process. Our model is efficiently trained end-to-end on a graphics processing unit (GPU), in a single stage, exploiting the dense inference capabilities of fully CNNs. We performed comprehensive experiments over two publicly available datasets. First, we demonstrate a state-of-the-art performance on the ISBR dataset. Then, we report a large-scale multi-site evaluation over 1112 unregistered subject datasets acquired from 17 different sites (ABIDE dataset), with ages ranging from 7 to 64 years, showing that our method is robust to various acquisition protocols, demographics and clinical factors. Our method yielded segmentations that are highly consistent with a standard atlas-based approach, while running in a fraction of the time needed by atlas-based methods and avoiding registration/normalization steps. This makes it convenient for massive multi-site neuroanatomical imaging studies. To the best of our knowledge, our work is the first to study subcortical structure segmentation on such large-scale and heterogeneous data. Copyright © 2017 Elsevier Inc. All rights reserved.

  13. Load response of the tarsal bones in patients with flatfoot deformity: in vivo 3D study.

    PubMed

    Kido, Masamitsu; Ikoma, Kazuya; Imai, Kan; Maki, Masahiro; Takatori, Ryota; Tokunaga, Daisaku; Inoue, Nozomu; Kubo, Toshikazu

    2011-11-01

    The objective of this study was to evaluate the bone rotation of each joint in the hindfoot and compare the load response in healthy feet with that in flatfeet by analyzing the reconstructive three-dimensional (3D) CT image data during weightbearing. CT scans of 21 healthy feet and 21 feet with flatfoot deformity were taken in non-load condition followed by full-body weightbearing load condition. The images of the hindfoot bones were reconstructed into 3D models. The volume merge method in three planes was used to calculate the position of the talus relative to the tibia in the tibiotalar joint, the navicular relative to the talus in talonavicular joint, and the calcaneus relative to the talus in the talocalcaneal joint. The talar position difference to the load response relative to the tibia in the tibiotalar joint in a flatfoot was 1.7 degrees more plantarflexed in comparison to that in a healthy foot (p = 0.031). The navicular position difference to the load response relative to the talus in the talonavicular joint was 2.3 degrees more everted (p = 0.0034). The calcaneal position difference to the load response relative to the talus in the talocalcaneal joint was 1.1 degrees more dorsiflexed (p = 0.0060) and 1.7 degrees more everted (p = 0.0018). Referring to previous cadaver study, regarding not only the cadaveric foot, but also the live foot, joint instability occurred in the hindfoot with load in patients with flatfoot. The method used in this study might be applied to clinical analysis of foot diseases such as the staging of flatfoot and to biomechanical analysis to evaluate the effects of foot surgery in the future.

  14. Assessment of prosthesis alignment after revision total knee arthroplasty using EOS 2D and 3D imaging: a reliability study.

    PubMed

    Meijer, Marrigje F; Boerboom, Alexander L; Stevens, Martin; Bulstra, Sjoerd K; Reininga, Inge H F

    2014-01-01

    A new low-dose X-ray device, called EOS, has been introduced for determining lower-limb alignment in 2D and 3D. Reliability has not yet been assessed when using EOS on lower limbs containing a knee prosthesis. Therefore purpose of this study was to determine intraobserver and interobserver reliability of EOS 2D and 3D knee prosthesis alignment measurements after revision total knee arthroplasty (rTKA). Forty anteroposterior and lateral images of 37 rTKA patients were included. Two observers independently performed measurements on these images twice. Varus/valgus angles were measured in 2D (VV2D) and 3D (VV3D). Intraclass correlation coefficients and the Bland and Altman method were used to determine reliability. T-tests were used to test potential differences. Intraobserver and interobserver reliability were excellent for VV2D and VV3D. No significant difference or bias between the first and second measurements or the two observers was found. A significant mean and absolute difference of respectively 1.00° and 1.61° existed between 2D and 3D measurements. EOS provides reliable varus/valgus measurements in 2D and 3D for the alignment of the knee joint with a knee prosthesis. However, significant differences exist between varus/valgus measurements in 2D and 3D.

  15. Study of negative hydrogen ion beam optics using the 3D3V PIC model

    SciTech Connect

    Miyamoto, K.; Nishioka, S.; Goto, I.; Hatayama, A.; Hanada, M.; Kojima, A.

    2015-04-08

    The mechanism of negative ion extraction under real conditions with the complex magnetic field is studied by using the 3D PIC simulation code. The extraction region of the negative ion source for the negative ion based neutral beam injection system in fusion reactors is modelled. It is shown that the E x B drift of electrons is caused by the magnetic filter and the electron suppression magnetic field, and the resultant asymmetry of the plasma meniscus. Furthermore, it is indicated that that the asymmetry of the plasma meniscus results in the asymmetry of negative ion beam profile including the beam halo. It could be demonstrated theoretically that the E x B drift is not significantly weakened by the elastic collisions of the electrons with neutral particles.

  16. The IASPEI Reference Event List to Support 3D Velocity Model Validation Studies

    NASA Astrophysics Data System (ADS)

    Bondar, I.; Storchak, D. A.

    2013-05-01

    The IASPEI Reference Event List (Ground Truth database) maintained and hosted by the International Seismological Centre (ISC) on behalf of the IASPEI became an indispensable tool for the validation of 3D seismic velocity models. The Ground Truth database is regularly updated and currently consists of some 7,600 GT0-5 events (earthquakes, chemical and nuclear explosions). Recently the CTBTO has launched a global initiative to facilitate the development of the Regional Seismic Travel Time (RSTT) velocity model on a global scale by forming regional expert groups. We make a concentrated effort to increase the number and the coverage of ground truth events in Latin America. To further support the RSTT development and validation studies, the ISC has developed a version of its location software to accommodate local and regional travel-time predictions provided by the RSTT software package. The RSTT-enabled ISC locator is made available through the ISC website.

  17. An isostatic study of the Karoo basin and underlying lithosphere in 3-D

    NASA Astrophysics Data System (ADS)

    Scheiber-Enslin, Stephanie E.; Ebbing, Jörg; Webb, Susan J.

    2016-08-01

    A 3-D density model of the crust and upper mantle beneath the Karoo basin is presented here. The model is constrained using potential field, borehole and seismic data. Uplift of the basin by the end of the Cretaceous has resulted in an unusually high plateau (>1000 m) covering a large portion of South Africa. Isostatic studies show the topography is largely compensated by changes in Moho depths (˜35 km on-craton and >45 km off-craton) and changes in lithospheric mantle densities between the Kaapvaal Craton and surrounding regions (˜50 kg m-3 increase from on- to off-craton). This density contrast is determined by inverted satellite gravity and gravity gradient data. The highest topography along the edge of the plateau (>1200 m) and a strong Bouguer gravity low over Lesotho, however, can only be explained by a buoyant asthenosphere with a density decrease of around 40 kg m-3.

  18. A comparative study of the 3D precentral gyrus model for unipolar and bipolar current stimulations.

    PubMed

    Seo, Hyeon; Kim, Donghyeon; Jun, Sung Chan

    2012-01-01

    Cortical stimulation (CS) is an appealing method for treating stroke and other disorders by promoting functional recovery. It is necessary to study the effect of different cortical stimulation types through numerical simulations in order to understand the underlying mechanism. In this paper, we simulated four types of invasive CS - unipolar ECS (epidural CS), bipolar ECS, unipolar SCS (subdural CS), and bipolar SCS - to investigate and compare the effects of stimulation types. Current stimulation was considered to increase the observability of the comparison between ECS and SCS. The simulation results obtained from the 3D precentral gyrus model showed ECS and SCS had similar current density distributions with higher stimulated current. However, the differences between bipolar and unipolar stimulation are significant with higher stimulated current. As stimulated current increased, unipolar CS penetrated deeper and wider regions than bipolar CS, so it can be more effective for functional recovery.

  19. Study of the 3D displacement field in Lorca (Murcia, Spain) subsidence area

    NASA Astrophysics Data System (ADS)

    Fernandez, Jose; Prieto, Juan F.; Palano, Mimmo; Abajo, Tamara; Perez, Enrique; Escayo, Joaquin; Velasco, Jesus; Herrero, Tomas; Camacho, Antonio G.; Bru, Guadalupe; Molina, Inigo; Lopez, Juan C.; Rodriguez-Velasco, Gema; Gomez, Israel

    2017-04-01

    González and Fernández (2011) revealed that the Alto Guadalentín Basin, located in southern Spain, is affected by the highest subsidence rates measured in Europe (about 10 cm/yr) as a direct consequence of long-term aquifer exploitation. They used ERS and ENVISAT radar data spanning the 1992 - 2007 period. They identify a delayed transient nonlinear compaction of the Alto Guadalentín aquifer due to the 1990-1995 drought period. González et al. (2012) evaluated the relationship between crust unloading due to groundwater overexploitation and stress change on regional active tectonic faults in the same in relation with the May 2008 Lorca earthquake. Bonì et al. (2014) extended these previous studies using advanced DInSAR techniques and ALOS PALSAR (2007-2010) and COSMO-SkyMed (2011-2012) radar images for the time period 1992-2012. Additionally, the satellite measurements provide locally comparable results with measurements acquired by two permanent GNSS stations located in the study area. Furthermore, new geological and hydrogeological data were collected and analyzed in order to assess aquifer system compressibility and groundwater level changes in the past 50 years. The comparison of these data with advanced DInSAR displacement measurements allowed for a better spatial and temporal understanding of the governing mechanisms of subsidence due to overexploitation of the Alto Guadalentín aquifer system. But even though the aforementioned achievements have been reached, all regional studies of the area to date are based on satellite radar interferometry using just ascending or descending acquisitions, without any combination among them to obtain vertical and horizontal (E-W) components. Therefore, only the regional LOS displacement field is known and it is assumed to correspond to vertical displacement. However, it is important to obtain the 3D motion field in order to perform a correct interpretation of the observations, as well as to carry out an advanced

  20. A 3D Numerical Study of Gravitational Instabilities in Young Circumbinary Disks

    NASA Astrophysics Data System (ADS)

    Cai, Kai; Michael, Scott; Durisen, Richard

    2013-07-01

    Gravitational instabilities (GIs) in protoplanetary disks have been suggested as one of the major formation mechanisms of giant planets. Theoretical and computational studies have indicated that certain family of GIs can be excited in a circumbinary disk, which could lead to enhanced protoplanet formation (e.g., Sellwood & Lin 1989, Boss 2006). We have carried out a 3D simulation of a gravitationally unstable circumbinary disk around a young Sun-like star and a 0.02-Msun companion, both inside the central hole of the disk. Here we present a preliminary comparison between this simulation and a similarly simulated circumstellar disk around a solar-mass star but without the low-mass companion. The GIs stimulated by the binary and those that arise spontaneously are quite different in structure and strength. However, no fragmentation is observed, even after many orbital periods as measured in the outer disk.

  1. Roughness receptivity studies in a 3-D boundary layer - Flight tests and computations

    NASA Astrophysics Data System (ADS)

    Carpenter, Andrew L.; Saric, William S.; Reed, Helen L.

    The receptivity of 3-D boundary layers to micron-sized, spanwise-periodic Discrete Roughness Elements (DREs) was studied. The DREs were applied to the leading edge of a 30-degree swept-wing at the wavelength of the most unstable disturbance. In this case, calibrated, multi-element hotfilm sensors were used to measure disturbance wall shear stress. The roughness height was varied from 0 to 50 microns. Thus, the disturbance-shear-stress amplitude variations were determined as a function of modulated DRE heights. The computational work was conducted parallel to the flight experiments. The complete viscous flowfield over the O-2 aircraft with the SWIFT model mounted on the port wing store pylon was successfully modeled and validated with the flight data. This highly accurate basic-state solution was incorporated into linear stability calculations and the wave growth associated with the crossflow instability was calculated.

  2. Uncertainty studies of topographical measurements on steel surface corrosion by 3D scanning electron microscopy.

    PubMed

    Kang, K W; Pereda, M D; Canafoglia, M E; Bilmes, P; Llorente, C; Bonetto, R

    2012-02-01

    Pitting corrosion is a damage mechanism quite serious and dangerous in both carbon steel boiler tubes for power plants which are vital to most industries and stainless steels for orthopedic human implants whose demand, due to the increase of life expectation and rate of traffic accidents, has sharply increased. Reliable methods to characterize this kind of damage are becoming increasingly necessary, when trying to evaluate the advance of damage and to establish the best procedures for component inspection in order to determine remaining lives and failure mitigation. A study about the uncertainties on the topographies of corrosion pits from 3D SEM images, obtained at low magnifications (where errors are greater) and different stage tilt angles were carried out using an in-house software previously developed. Additionally, measurements of pit depths on biomaterial surfaces, subjected to two different surface treatments on stainless steels, were carried out. The different depth distributions observed were in agreement with electrochemical measurements.

  3. ALARA pre-job studies using the VISIPLAN 3D ALARA planning tool.

    PubMed

    Vermeersch, Fernand

    2005-01-01

    The optimisation of the radiation protection for the workers in nuclear industry is an important part of the safety culture. The application of the ALARA concept (to keep exposures as low as reasonably achievable) is not always straightforward as it is influenced by the site geometry, source distribution and work organisation. A good ALARA pre-job study must therefore be performed and should contain predicted doses for the different suggested work scenarios and provide a quantitative basis to select between various alternative work scenarios for a specific operation. In order to handle this information, SCK-CEN developed the VISIPLAN 3D ALARA planning tool. The tool makes it possible to evaluate the dose due to external gamma exposure based on the simulation of work scenarios taking into account worker positions and subsequent geometry and source distribution changes in a three-dimensional environment.

  4. Structural and property studies on metal-organic compounds with 3-D supramolecular network

    NASA Astrophysics Data System (ADS)

    Zhang, Qi-Ying; Ma, Ke-Fang; Xiao, Hong-Ping; Li, Xin-Hua; Shi, Qian

    2014-07-01

    Two carboxylato-bridged allomeric compounds, {[Cu2(dbsa)2(hmt) (H2O)4]1/2·2H2O}n (1), {[Ni(dbsa)(H2O)2]1/2[Ni(dbsa)(hmt)(H2O)2]1/2·2H2O}n (2) (H2dbsa=meso-2,3-dibromosuccinic acid, hmt=hexamethylenetetramine) have been synthesized and characterized by X-ray structral analyses. The metal ions have two kinds of coordination fashion in one unit, and bridged by carboxylate and hmt ligands along with weak interactions existing in the solid structure, forming a 3-D supramolecular network. Variable-temperature magnetic property studies reveal the existence of antiferromagnetic interactions in 1 and 2 with g=2.2, J1=-3.5 cm-1, J2=-2.8 cm-1 for 1, and g=2.1, J=-3.5 cm-1 for 2.

  5. Studying Pore Structure of Nonwovens with 3D Imaging and Modeling Permeability

    NASA Astrophysics Data System (ADS)

    Baradari, Mehdi Gholipour

    Nonwovens are classified as a porous material and pore structure is named as the most important and complex feature of them. Since pore structure is out of control during any nonwovens manufacturing processes, many attempts have been made to measure the major characteristics of a pore network including: pore size, pore volume, pore surface area and pore shape. Among all pore characteristics, pore size due to its significant influence on many nonwovens applications such as filtration is counted as the most significant one. Generally, experiment, theoretical modeling and image analysis are the most common methods to measure pore size of nonwovens. Normally, pores in nonwovens make many convergences and divergences along the length and for this reason, many pore diameters could be assigned for a media. Due to inefficiency of the aforementioned techniques to measure all these diameters, they are not precise enough to study pore structure. The initial objective of this research is obtaining information of the pore structure, especially pore sizes, by applying image analysis techniques to a 3D image of nonwovens obtained through 3D imaging techniques such as DVI and micro CT. This 3D structure of the nonwoven media will be transformed to a graph, employing skeletonization through AvizoRTM software. The obtained graph exhibits topology, shape and connectivity of the pore structure for the utilized nonwoven. In this graph, each node and link would be a representative for pores intersection and body of pore, respectively. Saving the information of this graph results to some matrices/vectors including nodes coordinated, connectivity and nodes thickness, which exhibits the pore size. Therefore, all the pore sizes available in the structure will be extracted through this method. As expected, the information obtained from pore network is very complex consisting many numbers, so analyse them would be very difficult. Therefore, it was tried to use the saved information to model

  6. Genetic and Environmental Contributions to Facial Morphological Variation: A 3D Population-Based Twin Study

    PubMed Central

    Djordjevic, Jelena; Zhurov, Alexei I.; Richmond, Stephen

    2016-01-01

    Introduction Facial phenotype is influenced by genes and environment; however, little is known about their relative contributions to normal facial morphology. The aim of this study was to assess the relative genetic and environmental contributions to facial morphological variation using a three-dimensional (3D) population-based approach and the classical twin study design. Materials and Methods 3D facial images of 1380 female twins from the TwinsUK Registry database were used. All faces were landmarked, by manually placing 37 landmark points, and Procrustes registered. Three groups of traits were extracted and analysed: 19 principal components (uPC) and 23 principal components (sPC), derived from the unscaled and scaled landmark configurations respectively, and 1275 linear distances measured between 51 landmarks (37 manually identified and 14 automatically calculated). The intraclass correlation coefficients, rMZ and rDZ, broad-sense heritability (h2), common (c2) and unique (e2) environment contributions were calculated for all traits for the monozygotic (MZ) and dizygotic (DZ) twins. Results Heritability of 13 uPC and 17 sPC reached statistical significance, with h2 ranging from 38.8% to 78.5% in the former and 30.5% to 84.8% in the latter group. Also, 1222 distances showed evidence of genetic control. Common environment contributed to one PC in both groups and 53 linear distances (4.3%). Unique environment contributed to 17 uPC and 20 sPC and 1245 distances. Conclusions Genetic factors can explain more than 70% of the phenotypic facial variation in facial size, nose (width, prominence and height), lips prominence and inter-ocular distance. A few traits have shown potential dominant genetic influence: the prominence and height of the nose, the lower lip prominence in relation to the chin and upper lip philtrum length. Environmental contribution to facial variation seems to be the greatest for the mandibular ramus height and horizontal facial asymmetry. PMID

  7. Accuracy of 3-D reconstruction with occlusions.

    PubMed

    Begon, Mickaël; Lacouture, Patrick

    2010-02-01

    A marker has to be seen by at least two cameras for its three-dimensional (3-D) reconstruction, and the accuracy can be improved with more cameras. However, a change in the set of cameras used in the reconstruction can alter the kinematics. The purpose of this study was to quantify the harmful effect of occlusions on two-dimensional (2-D) images and to make recommendations about the signal processing. A reference kinematics data set was collected for a three degree-of-freedom linkage with three cameras of a commercial motion analysis system without any occlusion on the 2-D images. In the 2-D images, some occlusions were artificially created based on trials of real cyclic motions. An interpolation of 2-D trajectories before the 3-D reconstruction and two filters (Savitsky-Golay and Butterworth filters) after reconstruction were successively applied to minimize the effect of the 2-D occlusions. The filter parameters were optimized by minimizing the root mean square error between the reference and the filtered data. The optimal parameters of the filters were marker dependent, whereas no filter was necessary after a 2-D interpolation. As the occlusions cause systematic error in the 3-D reconstruction, the interpolation of the 2-D trajectories is more appropriate than filtering the 3-D trajectories.

  8. In vivo kinematics of the talocrural and subtalar joints with functional ankle instability during weight-bearing ankle internal rotation: a pilot study.

    PubMed

    Kobayashi, Takumi; No, Yumi; Yoneta, Kei; Sadakiyo, Masashi; Gamada, Kazuyoshi

    2013-06-01

    Functional ankle instability (FAI) may involve abnormal kinematics. However, reliable quantitative data for kinematics of FAI have not been reported. The objective of this study was to determine if the abnormal kinematics exist in the talocrural and subtalar joints in patients with FAI. Five male subjects with unilateral FAI (a mean age of 33.4 ± 13.2 years) were enrolled. All subjects were examined with stress radiography and found to have no mechanical ankle instability (MAI). Lateral radiography at weight-bearing ankle internal rotation of 0° and 20° was taken with the ankle at 30° dorsiflexion and 30° plantar flexion. Patients underwent computed tomography scan at 1.0 mm slice pitch spanning distal one third of the lower leg and the distal end of the calcaneus. Three-dimensional (3D) kinematics of the talocrural and subtalar joints as well as the ankle joint complex (AJC) were determined using a 3D-to-2D registration technique using a 3D-to-2D registration technique with 3D bone models and plain radiography. FAI joints in ankle dorsiflexion demonstrated significantly greater subtalar internal rotation from 0° to 20° internal rotation. No statistical differences in plantar flexion were detected in talocrural, subtalar or ankle joint complex kinematics between the FAI and contralateral healthy joints. During ankle internal rotation in dorsiflexion, FAI joints demonstrated greater subtalar internal rotation. The FAI joints without mechanical instability presented abnormal kinematics. This suggests that abnormal kinematics of the FAI joints may contribute to chronic instability. FAI joints may involve unrecognized abnormal subtalar kinematics during internal rotation in ankle dorsiflexion which may contribute to chronic instability and frequent feelings of instability.

  9. A 3d-3d appetizer

    NASA Astrophysics Data System (ADS)

    Pei, Du; Ye, Ke

    2016-11-01

    We test the 3d-3d correspondence for theories that are labeled by Lens spaces. We find a full agreement between the index of the 3d N=2 "Lens space theory" T [ L( p, 1)] and the partition function of complex Chern-Simons theory on L( p, 1). In particular, for p = 1, we show how the familiar S 3 partition function of Chern-Simons theory arises from the index of a free theory. For large p, we find that the index of T[ L( p, 1)] becomes a constant independent of p. In addition, we study T[ L( p, 1)] on the squashed three-sphere S b 3 . This enables us to see clearly, at the level of partition function, to what extent G ℂ complex Chern-Simons theory can be thought of as two copies of Chern-Simons theory with compact gauge group G.

  10. The radiological feature of anterior occiput-to-axis screw fixation as it guides the screw trajectory on 3D printed models: a feasibility study on 3D images and 3D printed models.

    PubMed

    Wu, Ai-Min; Wang, Sheng; Weng, Wan-Qing; Shao, Zhen-Xuan; Yang, Xin-Dong; Wang, Jian-Shun; Xu, Hua-Zi; Chi, Yong-Long

    2014-12-01

    Anterior occiput-to-axis screw fixation is more suitable than a posterior approach for some patients with a history of posterior surgery. The complex osseous anatomy between the occiput and the axis causes a high risk of injury to neurological and vascular structures, and it is important to have an accurate screw trajectory to guide anterior occiput-to-axis screw fixation. Thirty computed tomography (CT) scans of upper cervical spines were obtained for three-dimensional (3D) reconstruction. Cylinders (1.75 mm radius) were drawn to simulate the trajectory of an anterior occiput-to-axis screw. The imitation screw was adjusted to 4 different angles and measured, as were the values of the maximized anteroposterior width and the left-right width of the occiput (C0) to the C1 and C1 to C2 joints. Then, the 3D models were printed, and an angle guide device was used to introduce the screws into the 3D models referring to the angles calculated from the 3D images. We found the screw angle ranged from α1 (left: 4.99±4.59°; right: 4.28±5.45°) to α2 (left: 20.22±3.61°; right: 19.63±4.94°); on the lateral view, the screw angle ranged from β1 (left: 13.13±4.93°; right: 11.82±5.64°) to β2 (left: 34.86±6.00°; right: 35.01±5.77°). No statistically significant difference was found between the data of the left and right sides. On the 3D printed models, all of the anterior occiput-to-axis screws were successfully introduced, and none of them penetrated outside of the cortex; the mean α4 was 12.00±4.11 (left) and 12.25±4.05 (right), and the mean β4 was 23.44±4.21 (left) and 22.75±4.41 (right). No significant difference was found between α4 and β4 on the 3D printed models and α3 and β3 calculated from the 3D digital images of the left and right sides. Aided with the angle guide device, we could achieve an optimal screw trajectory for anterior occiput-to-axis screw fixation on 3D printed C0 to C2 models.

  11. Distal Insertional Footprint of the Brachialis Muscle: 3D Morphometric Study

    PubMed Central

    Kamineni, Srinath; Bachoura, Abdo; Behrens, William; Kamineni, Ellora; Deane, Andrew

    2015-01-01

    Objective. The purpose of this study is to describe the three-dimensional morphometry of the brachialis muscle at its distal attachment to the ulna. Methods. Fifty cadaveric elbows were dissected and the brachialis distal insertion was isolated on the ulna bone and probed with a three-dimensional digitizer, to create a three-dimensional model of the footprint. Measurements and analysis of each footprint shape were recorded and compared based on gender and size. Results. There was significant gender difference in the surface length (P= 0.002) and projected length (P= 0.001) of the brachialis footprint. The shapes of the footprint also differed among the specimens. Conclusion. The shape of the brachialis muscle insertion differed among all the specimens without significant variation in gender or sides. There was also a significant difference in muscle length between males and females with little difference in the width and surface area. Significance. The information obtained from this study is important for kinematic understanding and surgical procedures around the elbow joint as well as the understanding of the natural age related anatomy of the brachialis footprint morphology. PMID:26640711

  12. Confirming the Potential of Systems Containing Strangeness for 3D Structure Studies of the Proton

    NASA Astrophysics Data System (ADS)

    Ali, Salina; Horn, Tanja; Carmignotto, Marco

    2017-01-01

    The additional flavor degree of freedom in kaon electroproduction provides a unique opportunity to study the mechanism underlying strangeness production and the transition from hadronic to partonic degrees of freedom in exclusive processes. At sufficiently high energies, where soft non-perturbative and hard physics have been shown to factorize, the Generalized Parton Distributions provide a spatial tomography of the nucleon. The applicability of this formalism can be experimentally verified. The E12-09-011 experiment at the 12 GeV Jefferson Lab aims to test the expected approach of the hard scattering regime through precision measurements of the fully separated exclusive kaon production cross section, and in particular the relative contributions and kinematic dependencies of the longitudinal and transverse cross sections. The longitudinal cross section also allows one to test the kaon pole dominance and could allow for kaon form factor extractions. In this talk, I will present the current status and discuss the outlook on future studies of strange quarks with kaon production as well as the particle identification requirements, and possible kaon form factor extractions at a 12-GeV Jefferson Lab. Supported in part by NSF grants PHY-1306227 and PHY-1306418.

  13. 3D Inversion of complex resistivity data: Case study on Mineral Exploration Site.

    NASA Astrophysics Data System (ADS)

    Son, Jeong-Sul; Kim, Jung-ho; Park, Sam-gyu; Park, My-Kyung

    2016-04-01

    Complex resistivity (CR) method is a frequency domain induced polarization (IP) method. It is also known as Spectral IP (SIP) method, if wider frequencies are used in data acquisition and interpretation. Although it takes more times than conventional time domain IP method, its data quality is more stable because its data acquisition which measures amplitude and phase is done when the source current is being injected. Our research group has been studying the modeling and inversion algorithms of complex resistivity (CR) method since several years ago and recently applied developed algorithms to various real field application. Due to tough terrain in our country, Profile survey and 2D interpretation were generally used. But to get more precise interpretation, three dimensional modeling and inversion algorithm is required. We developed three dimensional inversion algorithm for this purpose. In the inversion, we adopt the method of adaptive lagraingian multiplier which is automatically set based on the size of error misfit and model regularization norm. It was applied on the real data acquired for mineral exploration sites. CR data was acquired with the Zeta system, manufactured by Zonge Co. In the inversion, only the lower frequency data is used considering its quality and developed 3D inversion algorithm was applied to the acquired data set. Its results were compared to those of time domain IP data conducted at the same site. Resistivity image sections of CR and conventional resistivity method were almost identical. Phase anomalies were well matched with chargeability anomalies and the mining history of the test site. Each anomalies were well discriminated in 3D interpretation than those of 2D. From those experiments, we know that CR method was very effective for the mineral exploration.

  14. Study of City Landscape Heritage Using Lidar Data and 3d-City Models

    NASA Astrophysics Data System (ADS)

    Rubinowicz, P.; Czynska, K.

    2015-04-01

    In contemporary town planning protection of urban landscape is a significant issue. It regards especially those cities, where urban structures are the result of ages of evolution and layering of historical development process. Specific panoramas and other strategic views with historic city dominants can be an important part of the cultural heritage and genius loci. Other hand, protection of such expositions introduces limitations for future based city development. Digital Earth observation techniques creates new possibilities for more accurate urban studies, monitoring of urbanization processes and measuring of city landscape parameters. The paper examines possibilities of application of Lidar data and digital 3D-city models for: a) evaluation of strategic city views, b) mapping landscape absorption limits, and c) determination protection zones, where the urbanization and buildings height should be limited. In reference to this goal, the paper introduces a method of computational analysis of the city landscape called Visual Protection Surface (VPS). The method allows to emulate a virtual surface above the city including protection of a selected strategic views. The surface defines maximum height of buildings in such a way, that no new facility can be seen in any of selected views. The research includes also analyses of the quality of simulations according the form and precision of the input data: airborne Lidar / DSM model and more advanced 3D-city models (incl. semantic of the geometry, like in CityGML format). The outcome can be a support for professional planning of tall building development. Application of VPS method have been prepared by a computer program developed by the authors (C++). Simulations were carried out on an example of the city of Dresden.

  15. 3D-QSAR studies on triclosan derivatives as Plasmodium falciparum enoyl acyl carrier reductase inhibitors.

    PubMed

    Shah, P; Siddiqi, M I

    2010-07-01

    3D-QSAR studies were carried out on a training set of 53 structurally highly diverse analogues of triclosan to investigate the correlation of the structural properties of triclosan derivatives with the inhibition of the activity of enoyl acyl carrier protein reductase in Plasmodium falciparum (PfENR) by employing Comparative Molecular Field Analysis (CoMFA) and Comparative Molecular Similarity Indices Analysis (CoMSIA). The crystal structure bound conformation of triclosan, was used as a template for aligning molecules. The probable binding mode conformations of other inhibitors were explored according to molecular docking and molecular mechanics poisson-boltzmann surface area (MM/PBSA) solvation free energy estimation methods using grid based linear Poisson-Boltzmann calculations. Predictive 3D-QSAR models, established using routine database alignment rule based on crystallographic-bound conformation of template molecule, produced statistically significant results with cross-validated r2 cv values of 0.64 and 0.54 and non-cross-validated r2 ncv values of 0.96 and 0.97 for CoMFA and CoMSIA models, respectively. The statistically significant models were validated by a test set of nine compounds with predictive r(2) values of 0.534 and 0.765 for CoMFA and CoMSIA respectively. Our QSAR model is able to successfully explain the geometric and electrostatic complementarities between ligands and receptor and provides useful guidelines to design novel triclosan derivatives as Plasmodium falciparum enoyl acyl carrier reductase inhibitors.

  16. Comparison of quasi-static and dynamic squats: a three-dimensional kinematic, kinetic and electromyographic study of the lower limbs.

    PubMed

    Clément, Julien; Hagemeister, Nicola; Aissaoui, Rachid; de Guise, Jacques A

    2014-01-01

    Numerous studies have described 3D kinematics, 3D kinetics and electromyography (EMG) of the lower limbs during quasi-static or dynamic squatting activities. One study compared these two squatting conditions but only at low speed on healthy subjects, and provided no information on kinetics and EMG of the lower limbs. The purpose of the present study was to contrast simultaneous recordings of 3D kinematics, 3D kinetics and EMG of the lower limbs during quasi-stat ic and fast-dynamic squats in healthy and pathological subjects. Ten subjects were recruited: five healthy and five osteoarthritis subjects. A motion-capture system, force plate, and surface electrodes respectively recorded 3D kinematics, 3D kinetics and EMG of the lower limbs. Each subject performed a quasi-static squat and several fast-dynamic squats from 0° to 70° of knee flexion. The two squatting conditions were compared for positions where quasi-static and fast-dynamic knee flexion-extension angles were similar. Mean differences between quasi-static and fast-dynamic squats were 1.5° for rotations, 1.9 mm for translations, 2.1% of subjects' body weight for ground reaction forces, 6.6 Nm for torques, 11.2 mm for center of pressure, and 6.3% of maximum fast-dynamic electromyographic activities for EMG. Some significant differences (p<0.05) were found in internal rotation, anterior translation, vertical force and EMG. All differences between quasi-static and fast-dynamic squats were small. 69.5% of compared data were equivalent. In conclusion, this study showed that quasi-static and fast-dynamic squatting activities are comparable in terms of 3D kinematics, 3D kinetics and EMG, although some reservations still remain.

  17. Study on the Construction and Application of 3D Geographic Information Services for the Smart City

    NASA Astrophysics Data System (ADS)

    Mao, W.-Q.

    2014-04-01

    Smart City, whose main characteristics are intelligence and interconnection capability, has become an important goal of some cities' development. This paper, based on urban three-dimensional geographic information characteristics, analyses 3D geographic information requirements in the Smart City construction and development process, proposes construction and management methods for 3D geographic information. Furthermore, this paper takes Shanghai Geographic Information Public Service Platform as an example, discusses 3D geographic information application in multiple fields, and proves that it is an effective ways to promote Intelligent City construction.

  18. The applicability of 3D Doppler tomography to studies of polars

    NASA Astrophysics Data System (ADS)

    Kononov, D. A.; Agafonov, M. I.; Sharova, O. I.; Bisikalo, D. V.; Zhilkin, A. G.; Sidorov, M. Yu.

    2014-12-01

    The applicability of 3D Doppler tomography to mapping gas flows in polars is considered. Synthetic profiles of emission lines are calculated using solutions (for the densities, temperatures, and velocity components) obtained from 3D MHD modeling, which are then used to construct 3D Doppler tomograms in the velocity space ( V x , V y , V z ). Subsequent analysis of these tomograms applying observational constraints (the signal-to-noise ratio, number of input profiles, etc.) enables evaluation of limits to the method's applicability.

  19. A comparative study of three methods for robot kinematics.

    PubMed

    Aspragathos, N A; Dimitros, J K

    1998-01-01

    Three methods for the formulation of the kinematic equations of robots with rigid links are presented in this paper. The first and most common method in the robotics community is based on 4x4 homogeneous matrix transformation, the second one is based on Lie algebra, and the third one on screw theory expressed via dual quaternions algebra. These three methods are compared in this paper for their use in the kinematic analysis of robot arms. The basic theory and the transformation operators, upon which every method is based, are referenced. Three analytic algorithms are presented for the solution of the direct kinematic problem corresponding to each method, and the geometric significance of the transformation operators and parameters is explained. Finally, a comparative study on the computation and storage requirements for the three methods is worked out.

  20. Structured-light 3D scanner in use to assess the human body posture in physical therapy - a pilot study.

    PubMed

    Kurzydło, Wojciech; Stach, Beata; Bober, Aleksandra; Wodzińska, Mariola; Długosz, Mirosława M

    2014-01-01

    The main goal of this study was to asses the possibility of using mass production structured-light 3d scanner to asses human body posture. The study was conducted on a healthy 23 year old volunteer and a lay-figure. The experiment consisted of 28 3D scans, divided into three separate tests. The largest deviation observed in the first two trials was 24.42 mm. While the largest deviation observed in the third trial was 49.91 mm. Data obtained with the mass production structured-light 3d scanner may have comparable or better performance than commercially available systems for the assessment of BP.

  1. A Morpho-kinematic and Spectroscopic study of Bipolar Planetary Nebulae

    NASA Astrophysics Data System (ADS)

    Clyne, Niall

    2015-09-01

    In this thesis, studies of the kinematic properties for a sample of Galactic bipolar planetary nebulae, based on optical and infrared observations, were performed using a morpho-kinematic code, optical and NIR diagnostic diagrams, and techniques using data analyses. The mechanisms that form complex bipolar planetary nebulae remain unclear, and their shapes can be generated either as a planetary or symbiotic nebula. The origin of the material ionised by the white dwarf is very different in these two scenarios, and it complicates the understanding of the morphologies of planetary nebulae. The physical properties, structure, and dynamics of the bipolar nebulae, MyCn 18, M 2-9, Mz 3, Hen 2-104, and Abell 14, are each investigated in detail with the aim of understanding their nature, shaping mechanisms, and evolutionary history. For MyCn 18, VLT infrared images, VLT ISAAC infrared spectra, and long-slit optical echelle spectra are used to investigate the inner and outer regions of the nebula. The morpho-kinematic modelling tool shape was used to firmly constrain the structure and kinematics of the source. A timescale analysis was used to help determine the kinematical age of the nebula and its main components. A spectroscopic study of MyCn 18's central region reveals the detailed make-up of its nebular composition. Molecular hydrogen, atomic helium, and Brackett gamma emission are detected in the central regions. ISAAC spectra from a slit position along the narrow waist of the nebula demonstrate that the ionised gas resides closer to the centre of the nebula than the molecular emission. A final reconstructed 3-D model of MyCn 18 was generated, providing kinematical information on the expansion velocity of its nebular components by means of position-velocity arrays (or observed long-slit spectra). A kinematical age of the nebula and its components were obtained using the position-velocity arrays and timescale analysis. For M 2-9, Mz 3, and Hen 2-104, long-slit optical

  2. 3-D QSARS FOR RANKING AND PRIORITIZATION OF LARGE CHEMICAL DATASETS: AN EDC CASE STUDY

    EPA Science Inventory

    The COmmon REactivity Pattern (COREPA) approach is a three-dimensional structure activity (3-D QSAR) technique that permits identification and quantification of specific global and local steroelectronic characteristics associated with a chemical's biological activity. It goes bey...

  3. 3-D QSARS FOR RANKING AND PRIORITIZATION OF LARGE CHEMICAL DATASETS: AN EDC CASE STUDY

    EPA Science Inventory

    The COmmon REactivity Pattern (COREPA) approach is a three-dimensional structure activity (3-D QSAR) technique that permits identification and quantification of specific global and local steroelectronic characteristics associated with a chemical's biological activity. It goes bey...

  4. Evolution of 3-D geologic framework modeling and its application to groundwater flow studies

    USGS Publications Warehouse

    Blome, Charles D.; Smith, David V.

    2012-01-01

    In this Fact Sheet, the authors discuss the evolution of project 3-D subsurface framework modeling, research in hydrostratigraphy and airborne geophysics, and methodologies used to link geologic and groundwater flow models.

  5. Coupling high resolution 3D point clouds from terrestrial LiDAR with high precision displacement time series from GB-InSAR to understand landslide kinematic: example of the La Perraire instability, Swiss Alps.

    NASA Astrophysics Data System (ADS)

    Michoud, Clément; Baillifard, François; Harald Blikra, Lars; Derron, Marc-Henri; Jaboyedoff, Michel; Kristensen, Lene; Leva, Davide; Metzger, Richard; Rivolta, Carlo

    2014-05-01

    Terrestrial Laser Scanning and Ground-Based Radar Interferometry have changed our perception and interpretation of slope activities for the last 20 years and are now routinely used for monitoring and even early warning purposes. Terrestrial LiDAR allows indeed to model topography with very high point density, even in steep slopes, and to extract 3D displacements of rock masses by comparing successive datasets. GB-InSAR techniques are able to detect mm displacements over large areas. Nevertheless, both techniques suffer of some limitations. The precision of LiDAR devices actually limits its ability to monitor very slow-moving landslides, as well as by the dam resolution and the particular geometry (in azimuth/range) of GB-InSAR data may complicate their interpretations. To overcome those limitations, tools were produced to truly combine strong advantages of both techniques, by coupling high resolution geometrical data from terrestrial LiDAR or photogrammetry with high precision displacement time series from GB-InSAR. We thus developed a new exportation module into the processing chain of LiSAmobile (GB-InSAR) devices in order to wrap radar results from their particular geometry on high resolution 3D point clouds with cm mean point spacing. Furthermore, we also added new importation and visualization functionalities into Coltop3D (software for geological interpretations of laser scanning data) to display those results in 3D and even analyzing displacement time series. This new method has also been optimized to create as few and small files as possible and for time processing. Advantages of coupling terrestrial LiDAR and GB-InSAR data will be illustrated on the La Perraire instability, an active large rockslide involving frequent rockfalls and threatening inhabitant within the Val de Bagnes in the Swiss Alps. This rock mass, monitored by LiDAR and GPS since 2006, is huge enough and long-term movements are big (up to 1.6 m in 6 years) and complex enough to make

  6. EMPulse, a new 3-D simulation code for electromagnetic pulse studies

    NASA Astrophysics Data System (ADS)

    Cohen, Bruce; Eng, Chester; Farmer, William; Friedman, Alex; Grote, David; Kruger, Hans; Larson, David

    2016-10-01

    EMPulse is a comprehensive and modern 3-D simulation code for electro-magnetic pulse (EMP) formation and propagation studies, being developed at LLNL as part of a suite of codes to study E1 EMP originating from prompt gamma rays. EMPulse builds upon the open-source Warp particle-in-cell code framework developed by members of this team and collaborators at other institutions. The goal of this endeavor is a new tool enabling the detailed and self-consistent study of multi-dimensional effects in geometries that have typically been treated only approximately. Here we present an overview of the project, the models and methods that have been developed and incorporated into EMPulse, tests of these models, comparisons to simulations undertaken in CHAP-lite (derived from the legacy code CHAP due to C. Longmire and co-workers), and some approaches to increased computational efficiency being studied within our project. This work was performed under the auspices of the U.S. DOE by Lawrence Livermore National Security, LLC, Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  7. 3D high-resolution two-photon crosslinked hydrogel structures for biological studies.

    PubMed

    Brigo, Laura; Urciuolo, Anna; Giulitti, Stefano; Giustina, Gioia Della; Tromayer, Maximilian; Liska, Robert; Elvassore, Nicola; Brusatin, Giovanna

    2017-03-25

    Hydrogels are widely used as matrices for cell growth due to the their tuneable chemical and physical properties, which mimic the extracellular matrix of natural tissue. The microfabrication of hydrogels into arbitrarily complex 3D structures is becoming essential for numerous biological applications, and in particular for investigating the correlation between cell shape and cell function in a 3D environment. Micrometric and sub-micrometric resolution hydrogel scaffolds are required to deeply investigate molecular mechanisms behind cell-matrix interaction and downstream cellular processes. We report the design and development of high resolution 3D gelatin hydrogel woodpile structures by two-photon crosslinking. Hydrated structures of lateral linewidth down to 0.5 µm, lateral and axial resolution down to a few µm are demonstrated. According to the processing parameters, different degrees of polymerization are obtained, resulting in hydrated scaffolds of variable swelling and deformation. The 3D hydrogels are biocompatible and promote cell adhesion and migration. Interestingly, according to the polymerization degree, 3D hydrogel woodpile structures show variable extent of cell adhesion and invasion. Human BJ cell lines show capability of deforming 3D micrometric resolved hydrogel structures.

  8. Cell interaction study method using novel 3D silica nanoneedle gradient arrays

    PubMed Central

    Rajput, Deepak; Crowder, Spencer; Hofmeister, Lucas; Costa, Lino; Sung, Hak-Joon; Hofmeister, William

    2012-01-01

    Understanding cellular interactions with culture substrate features is important to advance cell biology and regenerative medicine. When surface topographical features are considerably larger in vertical dimension and are spaced at least one cell dimension apart, the features act as 3D physical barriers that can guide cell adhesion, thereby altering cell behavior. In the present study, we investigated competitive interactions of cells with neighboring cells and matrix using a novel nanoneedle gradient array. A gradient array of nanoholes was patterned at the surface of fused silica by single-pulse femtosecond laser machining. A negative replica of the pattern was extracted by nanoimprinting with a thin film of polymer. Silica was deposited on top of the polymer replica to form silica nanoneedles. NIH 3T3 fibroblasts were cultured on silica nanoneedles and their behavior was studied and compared with those cultured on a flat silica surface. The presence of silica nanoneedles was found to enhance the adhesion of fibroblasts while maintaining cell viability. The anisotropy in the arrangement of silica nanoneedles was found to affect the morphology and spreading of fibroblasts. Additionally, variations in nanoneedle spacing regulated cell-matrix and cell-cell interactions, effectively preventing cell aggregation in areas of tightly-packed nanoneedles. This proof-of-concept study provides a reproducible means for controlling competitive cell adhesion events and offers a novel system whose properties can be manipulated to intimately control cell behavior. PMID:23006558

  9. Postnatal development of Mongolian gerbil female prostate: An immunohistochemical and 3D modeling study.

    PubMed

    Sanches, Bruno D A; Zani, Bruno C; Maldarine, Juliana S; Biancardi, Manoel F; Santos, Fernanda C A; Góes, Rejane M; Vilamaior, Patricia S L; Taboga, Sebastião R

    2016-05-01

    The development of the prostate in male rodents, which involves complex epithelial-mesenchymal interactions between the urogenital sinus epithelium (UGE) and the urogenital sinus mesenchyme (UGM), has been deeply studied. In females, however, this process is not very clear. In this study, the postnatal development of the prostate in female Mongolian gerbils employing three-dimensional (3D) reconstructions, histochemical, and immunohistochemical techniques was characterized. It was observed that prostatic branching and differentiation in females was induced by a single mesenchyme localized at a ventrolateral position, which was named as ventrolateral mesenchyme (VLM); furthermore, the canalization of solid buds began on the third postnatal day (P3) and the branching morphogenesis on P5. We observed secretions in the acini at the end of the first month, and, on P45, the acini were completely differentiated. The strong cell proliferation phase in the first week coincided with the mesenchymal expression of estrogen receptor 1 (ESR1). The expression of androgen receptor (AR) paralleled cell differentiation, and, on P30, immunolabelling with p63 was restricted to basal cells. This study serves as a baseline parameter for future research on disruptions that could affect the development of the female prostate. © 2016 Wiley Periodicals, Inc.

  10. Gait Strategy in Patients with Ehlers-Danlos Syndrome Hypermobility Type: A Kinematic and Kinetic Evaluation Using 3D Gait Analysis

    ERIC Educational Resources Information Center

    Galli, Manuela; Cimolin, Veronica; Rigoldi, Chiara; Castori, Marco; Celletti, Claudia; Albertini, Giorgio; Camerota, Filippo

    2011-01-01

    The aim of this study was to quantify the gait patterns of adults with joint hypermobility syndrome/Ehlers-Danlos syndrome (JHS/EDS-HT) hypermobility type, using Gait Analysis. We quantified the gait strategy in 12 JHS/EDS-HT adults individuals (age: 43.08 + 6.78 years) compared to 20 healthy controls (age: 37.23 plus or minus 8.91 years), in…

  11. Gait Strategy in Patients with Ehlers-Danlos Syndrome Hypermobility Type: A Kinematic and Kinetic Evaluation Using 3D Gait Analysis

    ERIC Educational Resources Information Center

    Galli, Manuela; Cimolin, Veronica; Rigoldi, Chiara; Castori, Marco; Celletti, Claudia; Albertini, Giorgio; Camerota, Filippo

    2011-01-01

    The aim of this study was to quantify the gait patterns of adults with joint hypermobility syndrome/Ehlers-Danlos syndrome (JHS/EDS-HT) hypermobility type, using Gait Analysis. We quantified the gait strategy in 12 JHS/EDS-HT adults individuals (age: 43.08 + 6.78 years) compared to 20 healthy controls (age: 37.23 plus or minus 8.91 years), in…

  12. The topography of displaced canines: a 3D-CT study.

    PubMed

    Hofmann, Elisabeth; Rodich, Melanie; Hirschfelder, Ursula

    2011-08-01

    This study investigated the development of a three-dimensional (3D) coordinate system for radiologic volumetric data, allowing the analysis of the tooth axis of displaced teeth in relation to the occlusal, frontal, and sagittal reference planes. The data basis consisted of multislice computed tomography (MSCT) data of 37 patients with displaced upper canines. A total of 20 patients displayed unilateral displacement and 17 patients bilateral displacement (n = 54). The non-displaced canines of the opposite side served as the reference group (n = 20), together with MSCT data of 6 patients with non-displaced canines (n = 12). Three reference planes were constructed in the VoXim®5.6 program using landmarks (apex point and tip of the canine, incision point of the lower jaw, mesiobuccal tip of the lower left and right first molar, A-point). The tooth axis of the canines was analyzed in relation to these planes. The angle to the frontal plane was only slightly smaller in non-displaced canines (mean: 17.53°) than in palatally displaced canines (mean: 19.62°), which however exhibited a considerably greater range (0.40-38.00°). In contrast, the mean angle in buccally displaced canines was 32.79°. Both the differences between the reference group and buccally displaced canines and those between the palatally and buccally displaced canines were statistically significant. The angles for buccal (55.16°) and palatal (56.63°) displacement relative to the occlusal plane were significantly smaller than for the non-displaced teeth (70.95°). However, the range of palatal displacement was high (27.3-80.6°). The inclination towards the sagittal plane was slight for non-displaced canines (mean 6.07°) and for buccally displaced canines (mean 8.25°). The mean angle of palatally displaced canines was significantly larger (23.28°) than that in the other groups, with a much greater range (6.70-50.80°). The 3D coordinate system developed in this study allows the

  13. The use of 3D shape models of Rosetta targets for morphological studies

    NASA Astrophysics Data System (ADS)

    Capanna, C.; Jorda, L.; Auger, A.-T.; Groussin, O.; Gaskell, R.; Hviid, S.; Lamy, P.

    2015-10-01

    New 3D reconstruction techniques have been developed during the last decade to retrieve the global and/or local topography of small solar system bodies from visible images. These techniques can be separated into two categories: the so-called "photoclinometric" and the so-called "photogrammetric" techniques. Two implementations of the photoclinometric technique are available: the SPC technique (StereoPhotoClinometry) which combines sparse stereo with a classical clinometry algorithm[1] and a more recent method called MSPCD (Multi- Resolution Stereo-PhotoClinometry by Deformation) which proceeds by iterative deformation of a triangular mesh in a multi-resolution scheme[2], using stereo points as a guide during the deformation[3]. Our study is based on the 3D shape models of the asteroid Lutetia and of the comet 67P/Churyumov- Gerasimenko retrieved by the SPC and MSPCD methods. More specifically, we describe how the models produced by these two techniques can contribute to detailed and quantitative studies of the morphological properties of small bodies through three test cases shortly described below.• Measurement of crater depth and depth-to-diameter distribution. We show that the reconstruction techniques can lead to systematic differences in the measurement of crater depth. This will be illustrated by a set of craters[4] identified in the Achaia region at the surface of the asteroid 21 Lutetia. • Calculation of the volume of large boulders at the surface of comet 67P/C-G. We show how the reconstruction technique affects significantly the volume determination of a large boulder named Cheops in the Imhotep region. • Measurement of gravitational slopes. We discuss the differences between the gravitational slope distributions in Seth obtained with the SPC and MSPCD models[5]. Since no ground control points are available on small bodies, we use the comparison of high-resolution images with the corresponding synthetic images generated with the models[6] to assess

  14. Comparative study of DSC-PWI and 3D-ASL in ischemic stroke patients.

    PubMed

    Zhang, Shui-xia; Yao, Yi-hao; Zhang, Shun; Zhu, Wen-jie; Tang, Xiang-yu; Qin, Yuan-yuan; Zhao, Ling-yun; Liu, Cheng-xia; Zhu, Wen-zhen

    2015-12-01

    The purpose of this study was to quantitatively analyze the relationship between three dimensional arterial spin labeling (3D-ASL) and dynamic susceptibility contrast-enhanced perfusion weighted imaging (DSC-PWI) in ischemic stroke patients. Thirty patients with ischemic stroke were included in this study. All subjects underwent routine magnetic resonance imaging scanning, diffusion weighted imaging (DWI), magnetic resonance angiography (MRA), 3D-ASL and DSC-PWI on a 3.0T MR scanner. Regions of interest (ROIs) were drawn on the cerebral blood flow (CBF) maps (derived from ASL) and multi-parametric DSC perfusion maps, and then, the absolute and relative values of ASL-CBF, DSC-derived CBF, and DSC-derived mean transit time (MTT) were calculated. The relationships between ASL and DSC parameters were analyzed using Pearson's correlation analysis. Receiver operative characteristic (ROC) curves were performed to define the thresholds of relative value of ASL-CBF (rASL) that could best predict DSC-CBF reduction and MTT prolongation. Relative ASL better correlated with CBF and MTT in the anterior circulation with the Pearson correlation coefficients (R) values being 0.611 (P<0.001) and-0.610 (P<0.001) respectively. ROC curves demonstrated that when rASL ≤0.585, the sensitivity, specificity and accuracy for predicting ROIs with rCBF<0.9 were 92.3%, 63.6% and 76.6% respectively. When rASL ≤0.952, the sensitivity, specificity and accuracy for predicting ROIs rMTT>1.0 were 75.7%, 89.2% and 87.8% respectively. ASL-CBF map has better linear correlations with DSC-derived parameters (DSC-CBF and MTT) in anterior circulation in ischemic stroke patients. Additionally, when rASL is lower than 0.585, it could predict DSC-CBF decrease with moderate accuracy. If rASL values range from 0.585 to 0.952, we just speculate the prolonged MTT.

  15. Study of the effects of surface cladding on 3D transmon

    NASA Astrophysics Data System (ADS)

    Yoscovits, Zachary Robert

    Quantum computing is a very interesting field, due to the ability of quantum computers to solve many problems much faster than a classical computer. Superconducting qubits are electronic circuits composed of superconducting capacitors, inductors and Josephson junctions, which can implement a physical qubit. However they need improvements in their coherence time to create a viable quantum computing. In this work I study the effect on decoherence caused by two level systems in the native oxide that forms on the surface of qubit. To this end I fabricate 3D transmon qubits using materials grown my molecular beam epitaxy, to which a variety of different surface treatments had been applied. I began by fabricating qubits from niobium/aluminum oxide/niobium trilayers. To this end I developed a self-aligned process for fabricating sub-micron Josephson junctions. This process presented many challenges. During the development of this process, it became clear that niobium was an inferior material for fabricating qubits compared to aluminum. I then switched to making qubits from Aluminum. I began by studying the growth of aluminum on sapphire, and was able to achieve aluminum films with an RMS roughness of 0.2 nm by growing on c-plane sapphire that had been annealed in oxygen at 1100 °C and dipped in BOE. Next I fabricated 3D transmon qubits by adapting the standard shadowmask process for use with MBE. I fabricated qubits with a long in situ oxidation to fully passivate the surface before exposure to air. I also passivated the surface by means of growing co deposited aluminum oxide, and by grown aluminum nitride using a nitrogen plasma source. The coherence times of these qubits were compared to those a control sample that had been exposed to air immediately after growth. Overall it doesn't appear that cladding the surface changes the coherence time much, however it is difficult to form conclusions with this small sample size. The coated samples appeared to have slightly

  16. A kinematic study of Tycho's supernova remnant

    NASA Astrophysics Data System (ADS)

    Hughes, P. J.; Sato, T.

    2016-06-01

    Thanks to its confirmed nature as the remnant of a standard Type Ia supernova from spectroscopy of its light echo, Tycho's supernova remnant is a unique object that can provide a new perspective into thermonuclear supernova explosions. More than 400 years after its discovery as a supernova in November 1572, the remnant is now spread out over an 8 arcminute diameter region in a fairly symmetric, but patchy, shell-like morphology. The remnant's thermal X-ray emission is dominated by a strong Si Kalpha line and also shows line emission from other species such as S, Ar, Ca, and Fe. Existing proper motion and X-ray line width measurements indicate that Tycho's Si-rich ejecta shell is expanding at ~4700 km/s. We have taken advantage of the huge number of Si line photons in the 750-ks Chandra ACIS observation from 2009 to make the first direct velocity measurements of ejecta in Tycho. The patchy nature of the ejecta shell allows for identification of red- and blue-shifted clumps of emission from the receding and approaching hemispheres. We use nonequilibrium ionization thermal models to jointly fit both ACIS-S and ACIS-I observations to determine the radial expansion velocity of individual clumps and associated systematic uncertainty. Red-shifted clumps have speeds of 3500-7800 km/s and blue-shifted clumps 1600--5000 km/s with a systematic uncertainty of 500-2000 km/s determined by intercomparison of the ACIS-S and ACIS-I spectral results. From our Chandra radial analysis of surface brightness, centroid energy, and line width, we have confirmed previous line width measurements from Suzaku, but are able to utilize finer radial bins that reveal additional structure in the kinematics of Tycho. In particular the Si and S line widths reach a deep minimum at the position of the peak surface brightness near the remnant's edge and where Doppler broadening from the shell expansion is minimum. From the measured line widths and assuming that Doppler and turbulent broadening can be

  17. Mechanical Behaviour of 3D Multi-layer Braided Composites: Experimental, Numerical and Theoretical Study

    NASA Astrophysics Data System (ADS)

    Deng, Jian; Zhou, Guangming; Ji, Le; Wang, Xiaopei

    2017-03-01

    Mechanical properties and failure mechanisms of a newly designed 3D multi-layer braided composites are evaluated by experimental, numerical and theoretical studies. The microstructure of the composites is introduced. The unit cell technique is employed to address the periodic arrangement of the structure. The volume averaging method is used in theoretical solutions while FEM with reasonable periodic boundary conditions and meshing technique in numerical simulations. Experimental studies are also conducted to verify the feasibility of the proposed models. Predicted elastic properties agree well with the experimental data, indicating the feasibility of the proposed models. Numerical evaluation is more accurate than theoretical assessment. Deformations and stress distributions of the unit cell under tension shows displacement and traction continuity, guaranteeing the rationality of the applied periodic boundary conditions. Although compression and tension modulus are close, the compressive strength only reaches 70% of the tension strength. This indicates that the composites can be weakened in compressive loading. Additionally, by analysing the micrograph of fracture faces and strain-stress curves, a brittle failure mechanism is observed both in composites under tension and compression.

  18. 3D Simulation Study of the Spreading/Elongation of Ribbons in Two-Ribbon Flares

    NASA Astrophysics Data System (ADS)

    Arencibia, Milton; Cassak, Paul; Qiu, Jiong; Longscope, Dana; Priest, Eric R.

    2017-08-01

    Two-ribbon solar flares are characterized by the appearance in pairs of bright ribbons on the surface of the Sun. The ribbons separate from each other in time, which has been cited as one of many pieces of evidence that magnetic reconnection participates in the release of magnetic energy in solar flares. In addition to moving apart from each other, observations have revealed that ribbons also elongate (or spread) in time along the polarity inversion line. This is likely related to the spreading of the magnetic reconnection process in the corona. Recent observations have shown ribbons can elongate either unidirectionally or bidirectionally. We investigate the physics of reconnection spreading and its potential relation to two-ribbon flares via a parametric study using 3D numerical simulations with the two-fluid (MHD + Hall effect + electron inertia) model. We study how anti-parallel reconnection spreads in current sheets with a non-uniform thickness in the out-of-plane direction. Previous numerical work on spreading in current sheets of uniform thickness revealed that anti-parallel reconnection spreads at a speed given by the current carriers, but it is not obvious how the spreading occurs in a current sheet with non-uniform thickness. We compare spreading in this system with spreading in current sheets of uniform thickness that are thicker than the dissipation scale. The results may be useful not just for solar flares, but also for Earth’s magnetotail, laboratory reconnection experiments, and reconnection in the solar wind.

  19. Studying nanoparticles' 3D shape by aspect maps: Determination of the morphology of bacterial magnetic nanoparticles.

    PubMed

    Peddis, D; Muscas, G; Mathieu, R; Kumar, P Anil; Varvaro, G; Singh, G; Orue, I; Gil-Carton, D; Marcano, L; Muela, A; Fdez-Gubieda, M L

    2016-10-06

    Magnetic nanoparticles (MNPs) are widely investigated due to their potential use in various applications, ranging from electronics to biomedical devices. The magnetic properties of MNPs are strongly dependent on their size and shape (i.e., morphology), thus appropriate tools to investigate their morphology are fundamental to understand the physics of these systems. Recently a new approach to study nanoparticle morphology by Transmission Electron Microscopy (TEM) analysis has been proposed, introducing the so-called Aspect Maps (AMs). In this paper, a further evolution of the AM method is presented, allowing determination of the nanoparticles' 3D shape by TEM image. As a case study, this paper will focus on magnetite nanoparticles (Fe3O4), with a mean size of ∼45 nm extracted from Magnetospirillum gryphiswaldense magnetostatic bacteria (MTB). The proposed approach gives a complete description of the nanoparticles' morphology, allowing estimation of an average geometrical size and shape. In addition, preliminary investigation of the magnetic properties of MTB nanoparticles was performed, giving some insight into interparticle interactions and on the reversal mechanism of the magnetization.

  20. A parametric study of mucociliary transport by numerical simulations of 3D non-homogeneous mucus.

    PubMed

    Chatelin, Robin; Poncet, Philippe

    2016-06-14

    Mucociliary clearance is the natural flow of the mucus which covers and protects the lung from the outer world. Pathologies, like cystic fibrosis, highly change the biological parameters of the mucus flow leading to stagnation situations and pathogens proliferation. As the lung exhibits a complex dyadic structure, in-vivo experimental study of mucociliary clearance is almost impossible and numerical simulations can bring important knowledge about this biological flow. This paper brings a detailed study of the biological parameters influence on the mucociliary clearance, in particular for pathological situations such as cystic fibrosis. Using recent suitable numerical methods, a non-homogeneous mucus flow (including non-linearities) can be simulated efficiently in 3D, allowing the identification of the meaningful parameters involved in this biological flow. Among these parameters, it is shown that the mucus viscosity, the stiffness transition between pericilliary fluid and mucus, the pericilliary fluid height as well as both cilia length and beating frequency have a great influence on the mucociliary transport. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Feasibility study of 3D cardiac imaging using a portable conebeam scanner

    NASA Astrophysics Data System (ADS)

    Petrov, Ivailo; Helm, Patrick A.; Drangova, Maria

    2012-03-01

    While the Medtronic O-arm was developed for image-guidance applications during orthopedic procedures, it has potential to assist in cardiac surgical and electrophysiological applications; the purpose of this study was to evaluate the feasibility of using a mobile conebeam imaging system (O-arm) for gated cardiac imaging. In an in vivo study (two pigs), projection data from four independently acquired breath-held scans were combined to obtain cardiac gated 3D images. Projection images were acquired during the infusion of contrast agent and while tracking the ECG. Both standard and high-definition modes of the O-arm were evaluated. Projection data were retrospectively combined to generate images corresponding to systole and diastole; different acceptance windows were investigated. The contrast to noise ratio (CNR) between blood and myocardium was compared for the different gating strategies. Gated cardiac images were successfully reconstructed with as few as two scans combined (CNR = 2.5) and a window of 200 ms. Improved image quality was achieved when selecting views based on the minimum time from the selected phase point in the cardiac cycle, rather than a fixed window; in this case the effective temporal window increased to 475 ms for two scans. The O-arm has the potential to be used as a mobile cardiac imaging system, capable of three-dimensional imaging.

  2. Potentiometric and spectroscopic study of the interaction of 3d transition metal ions with inositol hexakisphosphate

    NASA Astrophysics Data System (ADS)

    Veiga, Nicolás; Macho, Israel; Gómez, Kerman; González, Gabriel; Kremer, Carlos; Torres, Julia

    2015-10-01

    Among myo-inositol phosphates, the most abundant in nature is the myo-inositol hexakisphosphate, InsP6. Although it is known to be vital to cell functioning, the biochemical research into its metabolism needs chemical and structural analysis of all the protonation, complexation and precipitation processes that it undergoes in the biological media. In view of its high negative charge at physiological level, our group has been leading a thorough research into the InsP6 chemical and structural behavior in the presence of the alkali and alkaline earth metal ions essential for life. The aim of this article is to extend these studies, dealing with the chemical and structural features of the InsP6 interaction with biologically relevant 3d transition metal ions (Fe(II), Fe(III), Mn(II), Co(II), Ni(II), Cu(II) and Zn(II)), in a non-interacting medium and under simulated physiological conditions. The metal-complex stability constants were determined by potentiometry, showing under ligand-excess conditions the formation of mononuclear species in different protonation states. Under metal ion excess, polymetallic species were detected for Fe(II), Fe(III), Zn(II) and Cu(II). Additionally, the 31P NMR and UV-vis spectroscopic studies provided interesting structural aspects of the strong metal ion-InsP6 interaction.

  3. 3D Printing Surgical Implants at the clinic: A Experimental Study on Anterior Cruciate Ligament Reconstruction

    PubMed Central

    Liu, An; Xue, Guang-huai; Sun, Miao; Shao, Hui-feng; Ma, Chi-yuan; Gao, Qing; Gou, Zhong-ru; Yan, Shi-gui; Liu, Yan-ming; He, Yong

    2016-01-01

    Desktop three-dimensional (3D) printers (D3DPs) have become a popular tool for fabricating personalized consumer products, favored for low cost, easy operation, and other advantageous qualities. This study focused on the potential for using D3DPs to successfully, rapidly, and economically print customized implants at medical clinics. An experiment was conducted on a D3DP-printed anterior cruciate ligament surgical implant using a rabbit model. A well-defined, orthogonal, porous PLA screw-like scaffold was printed, then coated with hydroxyapatite (HA) to improve its osteoconductivity. As an internal fixation as well as an ideal cell delivery system, the osteogenic scaffold loaded with mesenchymal stem cells (MSCs) were evaluated through both in vitro and in vivo tests to observe bone-ligament healing via cell therapy. The MSCs suspended in Pluronic F-127 hydrogel on PLA/HA screw-like scaffold showed the highest cell proliferation and osteogenesis in vitro. In vivo assessment of rabbit anterior cruciate ligament models for 4 and 12 weeks showed that the PLA/HA screw-like scaffold loaded with MSCs suspended in Pluronic F-127 hydrogel exhibited significant bone ingrowth and bone-graft interface formation within the bone tunnel. Overall, the results of this study demonstrate that fabricating surgical implants at the clinic (fab@clinic) with D3DPs can be feasible, effective, and economical. PMID:26875826

  4. A 3D velocimetry study of the flow through prosthetic heart valves

    NASA Astrophysics Data System (ADS)

    Ledesma, R.; Zenit, R.; Pulos, G.; Sanchez, E.; Juarez, A.

    2006-11-01

    Blood damage commonly appears in medical valve prothesis. It is a mayor concern for the designers and surgeons. It is well known that this damage and other complications result from the modified fluid dynamics through the replacement valve. To evaluate the performance of prosthetic heart valves, it is necessary to study the flow through them. To conduct this study , we have built a flow channel that emulates cardiac conditions and allows optical access such that a 3D-PIV velocimetry system could be used. The experiments are aimed to reconstruct the downstream structure of the flow through a mechanical and a bio-material tricuspid heart valve prothesis. Preliminary results show that the observed coherent structures can be related with haemolysis and trombosis, illnesses commonly found in valve prothesis recipients. The mean flow, the levels of strain rate and the turbulence intensity generated by the valves can also be directly related to blood damage. In general, bio-material made valves tend to reduce these complications.

  5. 3D Printing Surgical Implants at the clinic: A Experimental Study on Anterior Cruciate Ligament Reconstruction.

    PubMed

    Liu, An; Xue, Guang-huai; Sun, Miao; Shao, Hui-feng; Ma, Chi-yuan; Gao, Qing; Gou, Zhong-ru; Yan, Shi-gui; Liu, Yan-ming; He, Yong

    2016-02-15

    Desktop three-dimensional (3D) printers (D3DPs) have become a popular tool for fabricating personalized consumer products, favored for low cost, easy operation, and other advantageous qualities. This study focused on the potential for using D3DPs to successfully, rapidly, and economically print customized implants at medical clinics. An experiment was conducted on a D3DP-printed anterior cruciate ligament surgical implant using a rabbit model. A well-defined, orthogonal, porous PLA screw-like scaffold was printed, then coated with hydroxyapatite (HA) to improve its osteoconductivity. As an internal fixation as well as an ideal cell delivery system, the osteogenic scaffold loaded with mesenchymal stem cells (MSCs) were evaluated through both in vitro and in vivo tests to observe bone-ligament healing via cell therapy. The MSCs suspended in Pluronic F-127 hydrogel on PLA/HA screw-like scaffold showed the highest cell proliferation and osteogenesis in vitro. In vivo assessment of rabbit anterior cruciate ligament models for 4 and 12 weeks showed that the PLA/HA screw-like scaffold loaded with MSCs suspended in Pluronic F-127 hydrogel exhibited significant bone ingrowth and bone-graft interface formation within the bone tunnel. Overall, the results of this study demonstrate that fabricating surgical implants at the clinic (fab@clinic) with D3DPs can be feasible, effective, and economical.

  6. Numerical study of elastic turbulence in a 3D curvilinear micro-channel

    NASA Astrophysics Data System (ADS)

    Zhang, Hongna; Kunugi, Tomoaki; Li, Fengchen

    2012-11-01

    Elastic turbulence is an intriguing phenomenon of viscoelastic fluid flow, and dominated by the strong nonlinear elasticity due to the existence of flexible microstructures. It implies the possibility to generate a turbulent state (so-called an elastic turbulence) in the micro-scale devices by introducing the viscoelastic fluids, which could significantly enhance the mixing efficiency therein. Several experiments have been carried out to study its characteristics and underlying physics. However, the difficulty in measuring the flow information and behaviors of the microstructures, especially in the cross section normal to the mean flow direction, limits our current understanding and controlling. In the present study, the nondimensionalization method in which the characteristic velocity is defined as the ratio of the solution viscosity to the width of the channel was adopted to simulate the elastic turbulence in the micro-scale devices. And the elastic turbulent flow was obtained numerically in the 3D curvilinear micro-channel. Therein, the characteristics of the velocity field and polymer's behavior are discussed. Moreover, the energy transfer between the kinetic energy and the polymer's elastic energy is also investigated to understand its physical mechanism. Supported by the Japan Society for the Promotion of Science research fellowship and the Ministry of Education, Culture, Sports, Science and Technology via `Energy Science in the Age of Global Warming' of Global Center of Excellence (G-COE) program (J-051).

  7. 3D Airborne Electromagnetic Inversion: A case study from the Musgrave Region, South Australia

    NASA Astrophysics Data System (ADS)

    Cox, L. H.; Wilson, G. A.; Zhdanov, M. S.; Sunwall, D. A.

    2012-12-01

    Geophysicists know and accept that geology is inherently 3D, and is resultant from complex, overlapping processes related to genesis, metamorphism, deformation, alteration, weathering, and/or hydrogeology. Yet, the geophysics community has long relied on qualitative analysis, conductivity depth imaging (CDIs), 1D inversion, and/or plate modeling. There are many reasons for this deficiency, not the least of which has been the lack of capacity for historic 3D AEM inversion algorithms to invert entire surveys so as to practically affect exploration decisions. Our recent introduction of a moving sensitivity domain (footprint) methodology has been a paradigm shift in AEM interpretation. The basis of this method is that one needs only to calculate the responses and sensitivities for that part of the 3D earth model that is within the AEM system's sensitivity domain (footprint), and then superimpose all sensitivity domains into a single, sparse sensitivity matrix for the entire 3D earth model which is then updated in a regularized inversion scheme. This has made it practical to rigorously invert entire surveys with thousands of line kilometers of AEM data to mega-cell 3D models in hours using multi-processor workstations. Since 2010, over eighty individual projects have been completed for Aerodat, AEROTEM, DIGHEM, GEOTEM, HELITEM, HoisTEM, MEGATEM, RepTEM, RESOLVE, SkyTEM, SPECTREM, TEMPEST, and VTEM data from Australia, Brazil, Canada, Finland, Ghana, Peru, Tanzania, the US, and Zambia. Examples of 3D AEM inversion have been published for a variety of applications, including mineral exploration, oil sands exploration, salinity, permafrost, and bathymetry mapping. In this paper, we present a comparison of 3D inversions for SkyTEM, SPECTREM, TEMPET and VTEM data acquired over the same area in the Musgrave region of South Australia for exploration under cover.

  8. 3D dynamic rupture simulation and local tomography studies following the 2010 Haiti earthquake

    NASA Astrophysics Data System (ADS)

    Douilly, Roby

    temporary station deployments. We only considered events that had at least 6 P and 6 S arrivals, and an azimuthal gap less then 180 degrees, to simultaneously invert for hypocenters and 3D velocity structure in southern Haiti. We used the program VELEST to define a minimum 1D velocity model, which was then used as a starting model in the computer algorithm SIMULPS14 to produce the 3D tomography. Our results show a pronounced low velocity zone across the Logne fault, which is consistent with the sedimentary basin location from the geologic map. We also observe a southeast low velocity zone, which is consistent with a predefined structure in the morphology. Low velocity structure usually correlates with broad zones of deformation, such as the presence of cracks or faults, or from the presence of fluid in the crust. This work provides information that can be used in future studies focusing on how changes in material properties can affect rupture propagation, which is useful to assess the seismic hazard that Haiti and other regions are facing.

  9. Study of Electron Acceleration and Multiple Dipolarization Fronts in 3D kinetic models

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Ashour-Abdalla, Maha; Walker, Raymond; El-Alaoui, Mostafa

    2014-05-01

    The THEMIS mission encountered a depolarization front (DF) during a magnetotail crossing in the interval 035600 - 035900 UT on February 15, 2008 [1]. We present the results of an innovative investigative approach: we combine a global MHD model of the full Earth environment with a local PIC simulation. The global MHD view is provided on the UCLA model applied to the conditions for the interval of interest on Feb 15, 2008. At the specific time of 034800UT, a reconnection site first appear at about x=-15RE, y=4RE. We then use this specific MHD state as the initial setup for a fully kinetic PIC simulation, performed with the iPic3D code [2]. We consider a one way coupling where the MHD state is used as initial state and boundary conditions for the kinetic study [3]. In the present case, the time span of the kinetic simulation is short form the perspective of the global MHD simulation and does not require a full coupling where the MHD then process the information received back from the kinetic run [4]. The fields and particles are advanced self-consistently from the MHD state using a completely kinetic treatment. Many features missed by the MHD model emerge. Most notably a fast reconnection pattern develops and an unsteady reconnection process develops. The typical signatures of fast kinetic reconnection (Hall field) are observed and particle acceleration is obtained self consistently in the fields generated by the PIC simulation. The focus of the presentation will be the mechanisms of unsteady reconnection leading to multiple DFs. We observe intense wave activity propagating off the separatrices. We conduct a spectral analysis to isolate the different wave components in the lower hybrid and whistler regime. The unsteady reconnection and multiple DFs are also analysed in their impact on the energy transfer. We track the conversion of magnetic energy to particle energy and Poynting flux. The processes observed in the simulation are then compared with in situ THEMIS data

  10. [Exploratory study of 3D printing technique in the treatment of basilar invagination and atlantoaxial dislocation].

    PubMed

    Yin, Yiheng; Yu, Xinguang; Tong, Huaiyu; Xu, Tao; Wang, Peng; Qiao, Guangyu

    2015-10-06

    To investigate the clinical application value of the 3D printing technique in the treatment of basilar invagination and atlantoaxial dislocation. From January 2013 to September 2013, 10 patients with basilar invagination and atlantoaxial dislocation needing posterior fixation undertook 3D printing modes at the Department of Neurosurgery in PLA General Hospital. The 1:1 size models were established from skull base to C4 level with different colors between bone structures and vertebral arteries. The simulation of screw insertion was made to investigate the fixation plan and ideal entry point to avoid vertebral artery injury. After obtaining the individual screw insertion data in 3D printing modes, the according surgical operations were performed. The actual clinical results and virtual screw data in 3D printing mode were compared with each other. The 3D printing modes revealed that all the 10 patients had the dysplasia or occipitalized C1 posterior arch indicating C1 posterior arch screw implantation was not suitable. C1 lateral masses were chosen as the screws entry points. C2 screws were designed individually based on the 3D printing modes as follows: 3 patients with aberrant vertebral artery or narrow C2 pedicle less than 3.5 mm were not suitable for pedicle screw implantation. Among the 3 patients, 1 was fixed with C2 laminar screw, and 1 with C2-3 transarticular screw and 1 with C3 pedicle screw (also combined with congenital C2-3 vertebral fusion). Two patients with narrow C2 pedicle between 3.5 and 4mm were designed to choose pedicle screw fixation after 3D printing mode evaluation. One patient with C1 lateral mass vertically dislocated axis was planned with C1-2 transarticular screw fixation. All the other patients were planned with C2 pedicle screws. All the 10 patients had operation designed as the 3D printing modes schemes. The follow-up ranged from 12 to 18 months and all the patients recovered from the clinical symptoms and the bony fusion attained to

  11. [Spiral computerized tomography with tridimensional reconstruction (spiral 3D CT) in the study of maxillofacial pathology].

    PubMed

    Mevio, E; Calabrò, P; Preda, L; Di Maggio, E M; Caprotti, A

    1995-12-01

    Three dimensional computer reconstruction of CT scans provide head and neck surgeons with an exciting interactive display of clinical anatomy. The 3D CT reconstruction of complex maxillo facial anatomic parts permits a more specific preoperative analysis and surgical planning. Its delineation of disease extension aids the surgeon in developing his own mental three-dimensional image of the regional morphology. Three-dimensional CT permits a clearer perception of the extent of fracture comminution and resulting displacement of fragments. In the case of maxillo-facial tumors, 3D images provide a very clear picture of the extent of erosion involving the adjacent critical organs. Three-dimensional imaging in first generation 3D scanners did have some limitations such as long reconstruction times and inadequate resolution. Subsequent generations, in particular the spiral 3D CT, have eliminated these drawbacks. Furthermore, costs are comparable with those of other computer reconstruction technology that might provide similar images. Representative cases demonstrating the use of 3D CT in maxillofacial surgery and its benefits in planning surgery are discussed.

  12. Study of a high-resolution, 3-D positioning cadmium zinc telluride detector for PET

    PubMed Central

    Gu, Y; Matteson, J L; Skelton, R T; Deal, A C; Stephan, E A; Duttweiler, F; Gasaway, T M; Levin, C S

    2011-01-01

    This paper investigates the performance of 1 mm resolution Cadmium Zinc Telluride (CZT) detectors for positron emission tomography (PET) capable of positioning the 3-D coordinates of individual 511 keV photon interactions. The detectors comprise 40 mm × 40 mm × 5 mm monolithic CZT crystals that employ a novel cross-strip readout with interspersed steering electrodes to obtain high spatial and energy resolution. The study found a single anode FWHM energy resolution of 3.06±0.39% at 511 keV throughout most the detector volume. Improved resolution is expected with properly shielded front-end electronics. Measurements made using a collimated beam established the efficacy of the steering electrodes in facilitating enhanced charge collection across anodes, as well as a spatial resolution of 0.44±0.07 mm in the direction orthogonal to the electrode planes. Finally, measurements based on coincidence electronic collimation yielded a point spread function with 0.78±0.10 mm FWHM, demonstrating 1 mm spatial resolution capability transverse to the anodes – as expected from the 1 mm anode pitch. These findings indicate that the CZT-based detector concept has excellent performance and shows great promise for a high-resolution PET system. PMID:21335649

  13. 3D-QSAR and molecular docking studies on HIV protease inhibitors

    NASA Astrophysics Data System (ADS)

    Tong, Jianbo; Wu, Yingji; Bai, Min; Zhan, Pei

    2017-02-01

    In order to well understand the chemical-biological interactions governing their activities toward HIV protease activity, QSAR models of 34 cyclic-urea derivatives with inhibitory HIV were developed. The quantitative structure activity relationship (QSAR) model was built by using comparative molecular similarity indices analysis (CoMSIA) technique. And the best CoMSIA model has rcv2, rncv2 values of 0.586 and 0.931 for cross-validated and non-cross-validated. The predictive ability of CoMSIA model was further validated by a test set of 7 compounds, giving rpred2 value of 0.973. Docking studies were used to find the actual conformations of chemicals in active site of HIV protease, as well as the binding mode pattern to the binding site in protease enzyme. The information provided by 3D-QSAR model and molecular docking may lead to a better understanding of the structural requirements of 34 cyclic-urea derivatives and help to design potential anti-HIV protease molecules.

  14. Transmission electron microscopy studies and modeling of 3D reciprocal space of ω forming alloy.

    PubMed

    Alphy George; Sharma, Vinayak; Divakar, R; Sabeena, M; Mohandas, E

    2017-09-12

    Initial stage of ω phase formation and associated anomalous features that appear in diffraction patterns of a metastable β transition metal alloy have been investigated in this study with the aid of transmission electron microscopy, simulation and modeling. The paper explores discrete features that emerge in selected area diffraction patterns of quenched Ti-15wt%Mo alloy and analyzes the correlation between ω reflections and diffuse arcs by considering all variants of ω phase as per the formation kinetics of ω phase in β matrix while quenching. Superimposed simulated diffraction patterns have been compared with experimental counterparts and it is deduced that there is lack of congruence between ω reflections and diffuse arcs even after considering trigonal ω with varying degrees of displacement. Direct lattice imaging of trigonal ω in β matrix has been demonstrated by phase contrast microscopy coupled with Fourier filtering techniques. By investigating the nature of ω reflections and diffuse arcs with the aid of electron diffraction pattern calculations and phase contrast microscopy, it is shown that, existing model of three-dimensional (3D) reciprocal space of ω forming alloy at quenched stage is not complete. A new model incorporating a patterned intensity distribution is fitted at the octahedral sites of an fcc reciprocal lattice whose planar intersections with Ewald's sphere show a better fit with the observed experimental diffraction patterns. Copyright © 2017 Elsevier Ltd. All rights reserved.

  15. A 3D Computational Study on the Air-Blast Atomization of a Planar Liquid Layer

    NASA Astrophysics Data System (ADS)

    Chiodi, Robert; Desjardins, Olivier

    2016-11-01

    The air-blast atomization of a planar liquid layer is a complex fluid phenomenon involving the destabilization of a low speed liquid layer by a high speed gas coflow. While progress has been made in recent years on understanding the instability of the liquid surface, it remains difficult to accurately predict using stability analysis and requires special expertise and equipment to perform thorough experiments. Simulations provide an excellent way to conduct parametric studies to determine the effect of splitter plate geometry and momentum flux ratio on the frequency and wavelengths of instability, however, they are extremely difficult due to the high density ratio and large range of length and time scales present in the flow. Using an accurate conservative level set method in conjunction with a newly reformulated reinitialization equation, we perform 3D simulations of the air-blast atomization of a planar liquid layer and compare them to experiments. We then go on to explore the role momentum flux ratio plays in the longitudinal and transverse wavelengths of instability.

  16. 3D-QSAR study of hallucinogenic phenylalkylamines by using CoMFA approach

    NASA Astrophysics Data System (ADS)

    Zhang, Zhuoyong; An, Liying; Hu, Wenxiang; Xiang, Yuhong

    2007-04-01

    The three-dimensional quantitative structure-activity relationship (3D-QSAR) has been studied on 90 hallucinogenic phenylalkylamines by the comparative molecular field analysis (CoMFA). Two conformations were compared during the modeling. Conformation I referred to the amino group close to ring position 6 and conformation II related to the amino group trans to the phenyl ring. Satisfactory results were obtained by using both conformations. There were still differences between the two models. The model based on conformation I got better statistical results than the one about conformation II. And this may suggest that conformation I be preponderant when the hallucinogenic phenylalkylamines interact with the receptor. To further confirm the predictive capability of the CoMFA model, 18 compounds with conformation I were randomly selected as a test set and the remaining ones as training set. The best CoMFA model based on the training set had a cross-validation coefficient q 2 of 0.549 at five components and non cross-validation coefficient R 2 of 0.835, the standard error of estimation was 0.219. The model showed good predictive ability in the external test with a coefficient R pre 2 of 0.611. The CoMFA coefficient contour maps suggested that both steric and electrostatic interactions play an important role. The contributions from the steric and electrostatic fields were 0.450 and 0.550, respectively.

  17. Experiments and parametric studies on 3D metallic auxetic metamaterials with tuneable mechanical properties

    NASA Astrophysics Data System (ADS)

    Ren, Xin; Shen, Jianhu; Ghaedizadeh, Arash; Tian, Hongqi; Xie, Yi Min

    2015-09-01

    Auxetic metamaterials are synthetic materials with microstructures engineered to achieve negative Poisson’s ratios. Auxetic metamaterials are of great interest because of their unusual properties and various potential applications. However, most of the previous research has been focused on auxetic behaviour of elastomers under elastic deformation. Inspired by our recent finding of the loss of auxetic behaviour in metallic auxetic metamaterials, a systematic experimental and numerical investigation has been carried out to explore the mechanism behind this phenomenon. Using an improved methodology of generating buckling-induced auxetic metamaterials, several samples of metallic auxetic metamaterials have been fabricated using a 3D printing technique. The experiments on those samples have revealed the special features of auxetic behaviour for metallic auxetic metamaterials and proved the effectiveness of our structural modification. Parametric studies have been performed through experimentally validated finite element models to explore the auxetic performance of the designed metallic metamaterials. It is found that the auxetic performance can be tuned by the geometry of microstructures, and the strength and stiffness can be tuned by the plasticity of the base material while maintaining the auxetic performance.

  18. Thermocapillary bubble flow and coalescence in a rotating cylinder: A 3D study

    NASA Astrophysics Data System (ADS)

    Alhendal, Yousuf; Turan, A.; Al-mazidi, M.

    2015-12-01

    The process of thermocapillary bubbles rising in a rotating 3D cylinder in zero gravity was analysed and presented numerically with the aid of computational fluid dynamics (CFD) by means of the volume of fluid (VOF) method. Calculations were carried out to investigate in detail the effect of the rotational speed of the hosted liquid on the trajectory of both single and group bubbles driven by the Marangoni force in zero-gravity conditions. For rotational speeds from 0.25 to 2 rad/s, bubble displacement with angular motion was found to be directed between the hotter surface and the rotational axis. This is contrary to the conventional bubble flow from areas of high pressure to low pressure, radial direction, or from cold to hot regions, axial direction. The results demonstrate that for the ratio of rotational speeds to the thermocapillary bubble velocity larger than unity, the surface tension gradient is the dominant force and the bubble motion towards the hotter. On the other hand, for ratio less than 1, the bubble motion is dominated and is significantly affected by centrifugal force. As rotation speed increases, the amount of deflection increases and the Marangoni effect vanishes. The current study is novel in the sense that single- and multi-bubble motion incorporating thermocapillary forces in a rotating liquid in a zero-gravity environment has never been numerically investigated.

  19. Photoemission studies on the 3D Dirac semiemtal state in Na3Bi

    NASA Astrophysics Data System (ADS)

    Xu, Suyang; Chang, Liu; Kushwaha, Satya K.; Sankar, Raman; Krizan, Jason W.; Belopolski, Ilya; Neupane, Madhab; Bian, Guang; Alidoust, Nasser; Chang, Tay-Rong; Jeng, Horng-Tay; Huang, Cheng-Yi; Tsai, Wei-Feng; Lin, Hsin; Shibayev, Pavel P.; Chou, Fangcheng; Cava, Robert J.; Hasan, M. Zahid

    2015-03-01

    A three-dimensional Dirac semimetal is a novel state of matter that has recently attracted interest in condensed matter physics and materials science. We present electronic structure measurements on the (100) surface of a recently discovered Dirac semimetal material Na3Bi. Our experimental data, for the first time, reveal a Lifshitz transition between the two bulk Dirac cones in the bulk band structure of Na3Bi. These results identify the first example of a band structure singularity in 3D Dirac materials. This is in contrast to its 2D analogs such as in twisted bilayer graphene or the surface states of topological crystalline insulators, which have been studied extensively. The observation of multiple bulk Dirac nodes along the rotational crystal axis away from the Kramers point also serve as a signature for the symmetry-protected nature of the Dirac semimetal state in Na3Bi as elaborated in recent theories. The work at Princeton and Princeton-led synchrotron-based ARPES measurements is supported by U.S. DOE DE-FG-02-05ER46200.

  20. 3D structures of individual mammalian genomes studied by single-cell Hi-C.

    PubMed

    Stevens, Tim J; Lando, David; Basu, Srinjan; Atkinson, Liam P; Cao, Yang; Lee, Steven F; Leeb, Martin; Wohlfahrt, Kai J; Boucher, Wayne; O'Shaughnessy-Kirwan, Aoife; Cramard, Julie; Faure, Andre J; Ralser, Meryem; Blanco, Enrique; Morey, Lluis; Sansó, Miriam; Palayret, Matthieu G S; Lehner, Ben; Di Croce, Luciano; Wutz, Anton; Hendrich, Brian; Klenerman, Dave; Laue, Ernest D

    2017-04-06

    The folding of genomic DNA from the beads-on-a-string-like structure of nucleosomes into higher-order assemblies is crucially linked to nuclear processes. Here we calculate 3D structures of entire mammalian genomes using data from a new chromosome conformation capture procedure that allows us to first image and then process single cells. The technique enables genome folding to be examined at a scale of less than 100 kb, and chromosome structures to be validated. The structures of individual topological-associated domains and loops vary substantially from cell to cell. By contrast, A and B compartments, lamina-associated domains and active enhancers and promoters are organized in a consistent way on a genome-wide basis in every cell, suggesting that they could drive chromosome and genome folding. By studying genes regulated by pluripotency factor and nucleosome remodelling deacetylase (NuRD), we illustrate how the determination of single-cell genome structure provides a new approach for investigating biological processes.

  1. 3D Finite Element Study on: Bar Splinted Implants Supporting Partial Denture in the Reconstructed Mandible

    PubMed Central

    El-Anwar, Mohamed; Ghali, Rami; Aboelnagga, Mona

    2016-01-01

    AIM: This study aimed to estimate the stress patterns induced by the masticatory loads on a removable prosthesis supported and retained by bar splinted implants placed in the reconstructed mandible with two different clip materials and without clip, in the fibula-jaw bone and prosthesis using finite element analysis. METHODS: Two 3D finite element models were constructed, that models components were modeled on commercial CAD/CAM software then assembled into finite element package. Vertical loads were applied simulating the masticatory forces unilaterally in the resected site and bilaterally in the central fossa of the lower first molar as 100N (tension and compression). Analysis was based on the assumption full osseointegration between different types of bones, and between implants and fibula while fixing the top surface of the TMJ in place. RESULTS: The metallic bar connecting the three implants is insensitive to the clips material. Its supporting implants showed typical behavior with maximum stress values at the neck region. Fibula and jaw bone showed stresses within physiologic, while clips material effect seems to be very small due to its relatively small size. CONCLUSION: Switching loading force direction from tensile to compression did-not change the stresses and deformations distribution, but reversed their sign from positive to negative. PMID:27275353

  2. 3D DEM study of stick-slip behavior in partly saturated granular materials

    NASA Astrophysics Data System (ADS)

    Dorostkar, Omid; Johnson, Paul; Guyer, Robert; Marone, Chris; Carmeliet, Jan

    2017-04-01

    In the central part of faults, granular material is produced due to wear called fault gouge. During shearing, the fault gouge stores energy in the course of the stick phase, which can be suddenly released resulting in a stick-slip dynamics. The sudden release of accumulated energy leads to a drop in macroscopic friction coefficient, defined as ratio between shear stress and confining stress and to a sudden increase in kinetic energy of particles. Partial saturation of granular fault gouge with water can alter this dynamic stick-slip behavior. We use 3D discrete element method (DEM) simulations to study stick-slip dynamics in a wet granular fault gouge. The DEM model takes the presence of moisture into account introducing cohesive forces due to the presence of capillary bridges between the particles. We also consider viscous forces resistant to particles motion. Results show that in wet granular gouge, the macroscopic friction level attained during shearing is higher than in the dry state. The cohesive forces due to surface tension and Laplace pressure tend to maintain the contacts longer leading to longer and more stable stick phases, or higher recurrence times between successive slip events. This means that more energy can be stored leading to larger slip events characterized by larger drops in friction coefficient and larger thickness compaction. Our results are in line with experimental results on granular gouge of glass beads.

  3. Hepatic 3D spheroid models for the detection and study of compounds with cholestatic liability

    PubMed Central

    Hendriks, Delilah F. G.; Fredriksson Puigvert, Lisa; Messner, Simon; Mortiz, Wolfgang; Ingelman-Sundberg, Magnus

    2016-01-01

    Drug-induced cholestasis (DIC) is poorly understood and its preclinical prediction is mainly limited to assessing the compound’s potential to inhibit the bile salt export pump (BSEP). Here, we evaluated two 3D spheroid models, one from primary human hepatocytes (PHH) and one from HepaRG cells, for the detection of compounds with cholestatic liability. By repeatedly co-exposing both models to a set of compounds with different mechanisms of hepatotoxicity and a non-toxic concentrated bile acid (BA) mixture for 8 days we observed a selective synergistic toxicity of compounds known to cause cholestatic or mixed cholestatic/hepatocellular toxicity and the BA mixture compared to exposure to the compounds alone, a phenomenon that was more pronounced after extending the exposure time to 14 days. In contrast, no such synergism was observed after both 8 and 14 days of exposure to the BA mixture for compounds that cause non-cholestatic hepatotoxicity. Mechanisms behind the toxicity of the cholestatic compound chlorpromazine were accurately detected in both spheroid models, including intracellular BA accumulation, inhibition of ABCB11 expression and disruption of the F-actin cytoskeleton. Furthermore, the observed synergistic toxicity of chlorpromazine and BA was associated with increased oxidative stress and modulation of death receptor signalling. Combined, our results demonstrate that the hepatic spheroid models presented here can be used to detect and study compounds with cholestatic liability. PMID:27759057

  4. Monte Carlo study of a 3D Compton imaging device with GEANT4

    NASA Astrophysics Data System (ADS)

    Lenti, M.; Veltri, M.

    2011-10-01

    In this paper we investigate, with a detailed Monte Carlo simulation based on Geant4, the novel approach of Lenti (2008) [1] to 3D imaging with photon scattering. A monochromatic and well collimated gamma beam is used to illuminate the object to be imaged and the photons Compton scattered are detected by means of a surrounding germanium strip detector. The impact position and the energy of the photons are measured with high precision and the scattering position along the beam axis is calculated. We study as an application of this technique the case of brain imaging but the results can be applied as well to situations where a lighter object, with localized variations of density, is embedded in a denser container. We report here the attainable sensitivity in the detection of density variations as a function of the beam energy, the depth inside the object and size and density of the inclusions. Using a 600 keV gamma beam, for an inclusion with a density increase of 30% with respect to the surrounding tissue and thickness along the beam of 5 mm, we obtain at midbrain position a resolution of about 2 mm and a contrast of 12%. In addition the simulation indicates that for the same gamma beam energy a complete brain scan would result in an effective dose of about 1 mSv.

  5. 3D-QSAR studies on chromone derivatives as HIV-1 protease inhibitors

    NASA Astrophysics Data System (ADS)

    Ungwitayatorn, Jiraporn; Samee, Weerasak; Pimthon, Jutarat

    2004-02-01

    The three-dimensional quantitative structure-activity relationship (3D-QSAR) approach using comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) was applied to a series of 30 chromone derivatives, a new class of HIV-1 protease inhibitors. The best predictive CoMFA model gives cross-validated r2 ( q2)=0.763, non-cross-validated r2=0.967, standard error of estimate ( S)=5.092, F=90.701. The best CoMSIA model has q2=0.707, non-cross-validated r2=0.943, S=7.018, F=51.734, included steric, electrostatic, hydrophobic, and hydrogen bond donor fields. The predictive ability of these models was validated by a set of five compounds that were not included in the training set. The calculated (predicted) and experimental inhibitory activities were well correlated. The contour maps obtained from CoMFA and CoMSIA models were in agreement with the previous docking study for this chromone series.

  6. FUN3D Grid Refinement and Adaptation Studies for the Ares Launch Vehicle

    NASA Technical Reports Server (NTRS)

    Bartels, Robert E.; Vasta, Veer; Carlson, Jan-Renee; Park, Mike; Mineck, Raymond E.

    2010-01-01

    This paper presents grid refinement and adaptation studies performed in conjunction with computational aeroelastic analyses of the Ares crew launch vehicle (CLV). The unstructured grids used in this analysis were created with GridTool and VGRID while the adaptation was performed using the Computational Fluid Dynamic (CFD) code FUN3D with a feature based adaptation software tool. GridTool was developed by ViGYAN, Inc. while the last three software suites were developed by NASA Langley Research Center. The feature based adaptation software used here operates by aligning control volumes with shock and Mach line structures and by refining/de-refining where necessary. It does not redistribute node points on the surface. This paper assesses the sensitivity of the complex flow field about a launch vehicle to grid refinement. It also assesses the potential of feature based grid adaptation to improve the accuracy of CFD analysis for a complex launch vehicle configuration. The feature based adaptation shows the potential to improve the resolution of shocks and shear layers. Further development of the capability to adapt the boundary layer and surface grids of a tetrahedral grid is required for significant improvements in modeling the flow field.

  7. A feasibility study on estimation of tissue mixture contributions in 3D arterial spin labeling sequence

    NASA Astrophysics Data System (ADS)

    Liu, Yang; Pu, Huangsheng; Zhang, Xi; Li, Baojuan; Liang, Zhengrong; Lu, Hongbing

    2017-03-01

    Arterial spin labeling (ASL) provides a noninvasive measurement of cerebral blood flow (CBF). Due to relatively low spatial resolution, the accuracy of CBF measurement is affected by the partial volume (PV) effect. To obtain accurate CBF estimation, the contribution of each tissue type in the mixture is desirable. In general, this can be obtained according to the registration of ASL and structural image in current ASL studies. This approach can obtain probability of each tissue type inside each voxel, but it also introduces error, which include error of registration algorithm and imaging itself error in scanning of ASL and structural image. Therefore, estimation of mixture percentage directly from ASL data is greatly needed. Under the assumption that ASL signal followed the Gaussian distribution and each tissue type is independent, a maximum a posteriori expectation-maximization (MAP-EM) approach was formulated to estimate the contribution of each tissue type to the observed perfusion signal at each voxel. Considering the sensitivity of MAP-EM to the initialization, an approximately accurate initialization was obtain using 3D Fuzzy c-means method. Our preliminary results demonstrated that the GM and WM pattern across the perfusion image can be sufficiently visualized by the voxel-wise tissue mixtures, which may be promising for the diagnosis of various brain diseases.

  8. Experimental study of 3D Rayleigh-Taylor convection between miscible fluids in a porous medium

    NASA Astrophysics Data System (ADS)

    Nakanishi, Yuji; Hyodo, Akimitsu; Wang, Lei; Suekane, Tetsuya

    2016-11-01

    The natural convection of miscible fluids in porous media has applications in several fields, such as geoscience and geoengineering, and can be employed for the geological storage of CO2. In this study, we used X-ray computer tomography to visualize 3D fingering structures associated with the Rayleigh-Taylor instability between miscible fluids in a porous medium. In the early stages of the onset of the Rayleigh-Taylor instability, a fine crinkling pattern gradually appeared at the interface. As the wavelength and amplitude increased, descending fingers formed on the interface and extended vertically downward; in addition, ascending and highly symmetric fingers formed. The adjacent fingers were cylindrical in shape and coalesced to form large fingers. The fingers appearing on the interface tended to become finer with increasing Rayleigh number, which is consistent with linear perturbation theory. When the Péclet number exceeded 10, transverse dispersion increased the finger diameter and enhanced the finger coalescence, strongly impacting the decrease in finger number density. When mechanical dispersion was negligible, the finger-extension velocity and the dimensionless mass-transfer rate scaled with the characteristic velocity and the Rayleigh number with an appropriate length scale. Mechanical dispersion not only reduced the onset time but also enhanced the mass transport.

  9. Mimicking Natural Laminar to Turbulent Flow Transition: A Systematic CFD Study Using PAB3D

    NASA Technical Reports Server (NTRS)

    Pao, S. Paul; Abdol-Hamid, Khaled S.

    2005-01-01

    For applied aerodynamic computations using a general purpose Navier-Stokes code, the common practice of treating laminar to turbulent flow transition over a non-slip surface is somewhat arbitrary by either treating the entire flow as turbulent or forcing the flow to undergo transition at given trip locations in the computational domain. In this study, the possibility of using the PAB3D code, standard k-epsilon turbulence model, and the Girimaji explicit algebraic stresses model to mimic natural laminar to turbulent flow transition was explored. The sensitivity of flow transition with respect to two limiters in the standard k-epsilon turbulence model was examined using a flat plate and a 6:1 aspect ratio prolate spheroid for our computations. For the flat plate, a systematic dependence of transition Reynolds number on background turbulence intensity was found. For the prolate spheroid, the transition patterns in the three-dimensional boundary layer at different flow conditions were sensitive to the free stream turbulence viscosity limit, the reference Reynolds number and the angle of attack, but not to background turbulence intensity below a certain threshold value. The computed results showed encouraging agreements with the experimental measurements at the corresponding geometry and flow conditions.

  10. Study of a high-resolution, 3D positioning cadmium zinc telluride detector for PET

    NASA Astrophysics Data System (ADS)

    Gu, Y.; Matteson, J. L.; Skelton, R. T.; Deal, A. C.; Stephan, E. A.; Duttweiler, F.; Gasaway, T. M.; Levin, C. S.

    2011-03-01

    This paper investigates the performance of 1 mm resolution cadmium zinc telluride (CZT) detectors for positron emission tomography (PET) capable of positioning the 3D coordinates of individual 511 keV photon interactions. The detectors comprise 40 mm × 40 mm × 5 mm monolithic CZT crystals that employ a novel cross-strip readout with interspersed steering electrodes to obtain high spatial and energy resolution. The study found a single anode FWHM energy resolution of 3.06 ± 0.39% at 511 keV throughout most of the detector volume. Improved resolution is expected with properly shielded front-end electronics. Measurements made using a collimated beam established the efficacy of the steering electrodes in facilitating enhanced charge collection across anodes, as well as a spatial resolution of 0.44 ± 0.07 mm in the direction orthogonal to the electrode planes. Finally, measurements based on coincidence electronic collimation yielded a point spread function with 0.78 ± 0.10 mm FWHM, demonstrating 1 mm spatial resolution capability transverse to the anodes—as expected from the 1 mm anode pitch. These findings indicate that the CZT-based detector concept has excellent performance and shows great promise for a high-resolution PET system.

  11. Study of a high-resolution, 3D positioning cadmium zinc telluride detector for PET.

    PubMed

    Gu, Y; Matteson, J L; Skelton, R T; Deal, A C; Stephan, E A; Duttweiler, F; Gasaway, T M; Levin, C S

    2011-03-21

    This paper investigates the performance of 1 mm resolution cadmium zinc telluride (CZT) detectors for positron emission tomography (PET) capable of positioning the 3D coordinates of individual 511 keV photon interactions. The detectors comprise 40 mm × 40 mm × 5 mm monolithic CZT crystals that employ a novel cross-strip readout with interspersed steering electrodes to obtain high spatial and energy resolution. The study found a single anode FWHM energy resolution of 3.06 ± 0.39% at 511 keV throughout most of the detector volume. Improved resolution is expected with properly shielded front-end electronics. Measurements made using a collimated beam established the efficacy of the steering electrodes in facilitating enhanced charge collection across anodes, as well as a spatial resolution of 0.44 ± 0.07 mm in the direction orthogonal to the electrode planes. Finally, measurements based on coincidence electronic collimation yielded a point spread function with 0.78 ± 0.10 mm FWHM, demonstrating 1 mm spatial resolution capability transverse to the anodes-as expected from the 1 mm anode pitch. These findings indicate that the CZT-based detector concept has excellent performance and shows great promise for a high-resolution PET system.

  12. Human identification through frontal sinus 3D superimposition: Pilot study with Cone Beam Computer Tomography.

    PubMed

    Beaini, Thiago Leite; Duailibi-Neto, Eduardo F; Chilvarquer, Israel; Melani, Rodolfo F H

    2015-11-01

    As a unique anatomical feature of the human body, the frontal sinus morphology has been used for identification of unknown bodies with many techniques, mostly using 2D postero-anterior X-rays. With the increase of the use of Cone-Beam Computer Tomography (CBCT), the availability of this exam as ante-mortem records should be considered. The purpose of this study is to establish a new technique for frontal sinus identification through direct superimposition of 3D volumetric models obtained from CBCT exam, by testing two distinct situations. First, a reproducibility test, where two observers independently rendered models of frontal sinus from a sample 20 CBCT exams and identified them on each other's list. In the second situation, one observer tested the protocol and established on different exams of three individual. Using the open source DICOM viewer InVesallius(®) for rendering, Mesh Lab(®,) for positioning the models and CloudCompare for volumetric comparison, both observers matched cases with 100% accuracy and the level of coincidence in a identification situation. The uniqueness of the frontal sinus topography is remarkable and through the described technique, can be used in forensic as an identification method whenever both the sinus structure and antemortem computer tomography is available. Copyright © 2015 Elsevier Ltd and Faculty of Forensic and Legal Medicine. All rights reserved.

  13. Kinematic 3-D Retro-Modeling of an Orogenic Bend in the South Limón Fold-and-Thrust Belt, Eastern Costa Rica: Prediction of the Incremental Internal Strain Distribution

    NASA Astrophysics Data System (ADS)

    Brandes, Christian; Tanner, David C.; Winsemann, Jutta

    2016-10-01

    The South Limón fold-and-thrust belt, in the back-arc area of southern Costa Rica, is characterized by a 90° curvature of the strike of the thrust planes and is therefore a natural laboratory for the analysis of curved orogens. The analysis of curved fold-and-thrust belts is a challenge because of the varying structural orientations within the belt. Based on seismic reflection lines, we created a 3-D subsurface model containing three major thrust faults and three stratigraphic horizons. 3-D kinematic retro-deformation modeling was carried out to analyze the spatial evolution of the fold-and-thrust belt. The maximum amount of displacement on each of the faults is (from hinterland to foreland); thrust 1: 800 m; thrust 2: 600 m; thrust 3: 250 m. The model was restored sequentially to its pre-deformational state. The strain history of the stratigraphic horizons in the model was calculated at every step. This shows that the internal strain pattern has an abrupt change at the orogenic bend. Contractional strain occurs in the forelimbs of the hanging-wall anticlines, while a zone of dilative strain spreads from the anticline crests to the backlimbs. The modeling shows that a NNE-directed transport direction best explains the structural evolution of the bend. This would require a left-lateral strike-slip zone in the North to compensate for the movement and thereby decoupling the South Limón fold-and-thrust belt from northern Costa Rica. Therefore, our modeling supports the presence of the Trans-Isthmic fault system, at least during the Plio-Pleistocene.

  14. 3D modeling of soil structure in urban groundwater areas: case studies in Kolpene, Rovaniemi, Finland

    NASA Astrophysics Data System (ADS)

    Kupila, Juho

    2015-04-01

    3D modeling of groundwater areas is an important research method in groundwater surveys. Model of geological soil structure improves the knowledge of linkage between land use planning and groundwater protection. Results can be used as base information when developing the water supply services and anticipating and performing the measures needed in case of environmental accidents. Also, collected information is utilized when creating the groundwater flow model. In Finland, structure studies have been conducted in cooperation (among others) with the municipalities and local water suppliers and with the authorities from the Centre for Economic Development, Transport and the Environment. Geological Survey of Finland carries out project "Structure studies in Kolpene groundwater area" in Rovaniemi, Finnish Lapland. Study site is located in northern Finland, in the vicinity of the city center of Rovaniemi. Extent of the area is about 13 square kilometers and there are lots of urban residential areas and other human activities. The objective of this project is to determine the geological structure of the Kolpene groundwater area so that the results can be used to estimate the validity of the present exclusion area and possible risks to the groundwater caused by the land use. Soil layers of the groundwater area are studied by means of collecting information by heavy drilling, geophysical surveying (ground penetrating radar and gravimeter measurements) and water sampling from the installed observation pipes. Also the general geological and hydrological mappings are carried out. Main results which will be produced are: 1) the model of the bedrock surface, 2) the model of the surface of the ground water and flow directions, 3) the thickness of ground water saturated soil layers and 4) location and main characteristics of the soil layers which are significant to the ground water conditions. The preparing studies have been started at the end of 2013 and the results will be

  15. Synthesis and 3D-QSAR study of 1,4-dihydropyridine derivatives as MDR cancer reverters.

    PubMed

    Radadiya, Ashish; Khedkar, Vijay; Bavishi, Abhay; Vala, Hardevsinh; Thakrar, Shailesh; Bhavsar, Dhairya; Shah, Anamik; Coutinho, Evans

    2014-03-03

    A series of symmetrical and unsymmetrical 1,4-dihydropyridines were synthesized by a rapid, single pot microwave irradiation (MWI) based protocol along with conventional approach and characterized by NMR, IR and mass spectroscopic techniques. The compounds were evaluated for their tumor cell cytotoxicity in HL-60 tumor cells. A 3D-QSAR study using CoMFA and CoMSIA was carried out to decipher the factors governing MDR reversing ability in cancer. The resulting contour maps derived by the best 3D-QSAR models provide a good insight into the molecular features relevant to the biological activity in this series of analogs. 3D contour maps as a result of 3D-QSAR were utilized to identify some novel features that can be incorporated into the 1,4-dihydropyridine framework to enhance the activity.

  16. Investigations and improvements of digital holographic tomography applied for 3D studies of transmissive photonics microelements

    NASA Astrophysics Data System (ADS)

    Kujawinska, Malgorzata; Jozwicka, Agata; Kozacki, Tomasz

    2008-08-01

    In order to control performance of photonics microelements it is necessary to receive 3D information about their amplitude and phase distributions. To perform this task we propose to apply tomography based on projections gather by digital holography (DH). Specifically the DH capability to register several angular views of the object during a single hologram capture is employed, which may in future shorten significantly the measurement time or even allow for tomographic analysis of dynamic media. However such a new approach brings a lot of new issues to be considered. Therefore, in this paper the method limitations, with special emphasis on holographic reconstruction process, are investigated through extensive numerical experiments with special focus on 3D refractive index distribution determination.. The main errors and means of their elimination are presented. The possibility of 3D refractive index distribution determination by means of DHT is proved numerically and experimentally.

  17. Study on camera calibration technique of 3D color digitization system

    NASA Astrophysics Data System (ADS)

    Sun, Yuchen; Ge, Baozhen

    2006-11-01

    3D (three-dimensional) color digitization of an object is fulfilled by light-stripe method based on laser triangle principle and direct capturing method based on the color photo of the object. With this system, information matching between 3D and color sensor and data registration of different sensors are fulfilled by a sensor calibration process. The process uses the same round filament target to calibrate all of the sensors together. The principle and procedure of the process are presented in detail. Finally, a costume model is 3D color digitized and the obtaining data sets are processed by the method discussed, the results verify the correctness and feasibility of the algorithm.

  18. Retrieval of cloud microphysical parameters from INSAT-3D: a feasibility study using radiative transfer simulations

    NASA Astrophysics Data System (ADS)

    Jinya, John; Bipasha, Paul S.

    2016-05-01

    Clouds strongly modulate the Earths energy balance and its atmosphere through their interaction with the solar and terrestrial radiation. They interact with radiation in various ways like scattering, emission and absorption. By observing these changes in radiation at different wavelength, cloud properties can be estimated. Cloud properties are of utmost importance in studying different weather and climate phenomena. At present, no satellite provides cloud microphysical parameters over the Indian region with high temporal resolution. INSAT-3D imager observations in 6 spectral channels from geostationary platform offer opportunity to study continuous cloud properties over Indian region. Visible (0.65 μm) and shortwave-infrared (1.67 μm) channel radiances can be used to retrieve cloud microphysical parameters such as cloud optical thickness (COT) and cloud effective radius (CER). In this paper, we have carried out a feasibility study with the objective of cloud microphysics retrieval. For this, an inter-comparison of 15 globally available radiative transfer models (RTM) were carried out with the aim of generating a Look-up- Table (LUT). SBDART model was chosen for the simulations. The sensitivity of each spectral channel to different cloud properties was investigated. The inputs to the RT model were configured over our study region (50°S - 50°N and 20°E - 130°E) and a large number of simulations were carried out using random input vectors to generate the LUT. The determination of cloud optical thickness and cloud effective radius from spectral reflectance measurements constitutes the inverse problem and is typically solved by comparing the measured reflectances with entries in LUT and searching for the combination of COT and CER that gives the best fit. The products are available on the website www.mosdac.gov.in

  19. A novel 3D integrated platform for the high-resolution study of cell migration plasticity.

    PubMed

    Schneider, Julian; Bachmann, Tobias; Franco, Davide; Richner, Patrizia; Galliker, Patrick; Tiwari, Manish K; Ferrari, Aldo; Poulikakos, Dimos

    2013-08-01

    Understanding the mechanisms of interstitial cancer migration is of great scientific and medical interest. Creating 3D platforms, conducive to optical microscopy and mimicking the physical parameters (in plane and out of plane) involved in interstitial migration, is a major step forward in this direction. Here, a novel approach is used to directly print free-form, 3D micropores on basal scaffolds containing microgratings optimized for contact guidance. The platforms so formed are validated by monitoring cancer cell migration and micropore penetration with high-resolution optical microscopy. The shapes, sizes and deformability of the micropores are controllable, paving the way to decipher their role in interstitial migration.

  20. Comparative Study of Nonhybrid Density Functional Approximations for the Prediction of 3d Transition Metal Thermochemistry.

    PubMed

    Determan, John J; Poole, Katelyn; Scalmani, Giovanni; Frisch, Michael J; Janesko, Benjamin G; Wilson, Angela K

    2017-10-10

    The utility of several nonhybrid density functional approximations (DFAs) is considered for the prediction of gas phase enthalpies of formation for a large set of 3d transition metal-containing molecules. Nonhybrid DFAs can model thermochemical values for 3d transition metal-containing molecules with accuracy comparable to that of hybrid functionals. The GAM-generalized gradient approximation (GGA); the TPSS, M06-L, and MN15-L meta-GGAs; and the Rung 3.5 PBE+ΠLDA(s) DFAs all give root-mean-square deviations below that of the widely used B3LYP hybrid. Modern nonhybrid DFAs continue to show utility for transition metal thermochemistry.

  1. Size-dependent adsorption sites in a Prussian blue nanoparticle: A 3D-RISM study

    NASA Astrophysics Data System (ADS)

    Ruankaew, Nirun; Yoshida, Norio; Watanabe, Yoshihiro; Nakano, Haruyuki; Phongphanphanee, Saree

    2017-09-01

    The specific adsorption of alkali ions, Li+, Na+, K+, and Cs+, in electrolyte solutions on Prussian blue (PB) is investigated by using the three-dimensional (3D) reference interaction site-model (RISM) theory. The results from 3D-RISM show dramatically different adsorption sites between large ions (K+ and Cs+) and small ions (Li+ and Na+). The small ions are adsorbed at the channel entrance sites without the water-ion exchange mechanism. In contrast, the large ions are adsorbed in PB by the water-ion exchange mechanism, and the adsorption site of large ions is located at the center of the cage or at the interstitial site.

  2. Studies of mixed HEU-LEU-MTR cores using 3D models

    SciTech Connect

    Haenggi, P.; Lehmann, E.; Hammer, J.; Christen, R.

    1997-08-01

    Several different core loadings were assembled at the SAPHIR research reactor in Switzerland combining the available types of MTR-type fuel elements, consisting mainly of both HEU and LEU fuel. Bearing in mind the well known problems which can occur in such configurations (especially power peaking), investigations have been carried out for each new loading with a 2D neutron transport code (BOXER). The axial effects were approximated by a global buckling value and therefore the radial effects could be studied in considerably detail. Some of the results were reported at earlier RERTR meetings and were compared to those obtained by other methods and with experimental values. For the explicit study of the third dimension of the core, another code (SILWER), which has been developed in PSI for LWR power plant cores, has been selected. With the help of an adapted model for the MTR-core of SAPHIR, several important questions have been addressed. Among other aspects, the estimation of the axial contribution to the hot channel factors, the influence of the control rod position and of the Xe-poisoning on the power distribution were studied. Special attention was given to a core position where a new element was assumed placed near a empty, water filled position. The comparison of elements of low and high enrichments at this position was made in terms of the induced power peaks, with explicit consideration of axial effects. The program SILWER has proven to be applicable to MTR-cores for the investigation of axial effects. For routine use as for the support of reactor operation, this 3D code is a good supplement to the standard 2D model.

  3. Study of a viewer tracking system with multiview 3D display

    NASA Astrophysics Data System (ADS)

    Yang, Jinn-Cherng; Wu, Chang-Shuo; Hsiao, Chuan-Heng; Yang, Ming-Chieh; Liu, Wen-Chieh; Hung, Yi-Ping

    2008-02-01

    An autostereoscopic display provides users great enjoyment of stereo visualization without uncomfortable and inconvenient drawbacks of wearing stereo glasses. However, bandwidth constraints of current multi-view 3D display severely restrict the number of views that can be simultaneously displayed without degrading resolution or increasing display cost unacceptably. An alternative to multiple view presentation is that the position of observer can be measured by using viewer-tracking sensor. It is a very important module of the viewer-tracking component for fluently rendering and accurately projecting the stereo video. In order to render stereo content with respect to user's view points and to optically project the content onto the left and right eyes of the user accurately, the real-time viewer tracking technique that allows the user to move around freely when watching the autostereoscopic display is developed in this study. It comprises the face detection by using multiple eigenspaces of various lighting conditions, fast block matching for tracking four motion parameters of the user's face region. The Edge Orientation Histogram (EOH) on Real AdaBoost to improve the performance of original AdaBoost algorithm is also applied in this study. The AdaBoost algorithm using Haar feature in OpenCV library developed by Intel to detect human face and enhance the accuracy performance with rotating image. The frame rate of viewer tracking process can achieve up to 15 Hz. Since performance of the viewer tracking autostereoscopic display is still influenced under variant environmental conditions, the accuracy, robustness and efficiency of the viewer-tracking system are evaluated in this study.

  4. 3D Numerical Study of Typical CME Event: The 2010-04-03 Event

    NASA Astrophysics Data System (ADS)

    Zhou, Y.; Feng, X. S.; Zhao, X.

    2014-12-01

    The coronal mass ejection (CME) e