Science.gov

Sample records for 3d panel method

  1. Coupled 2D-3D finite element method for analysis of a skin panel with a discontinuous stiffener

    NASA Technical Reports Server (NTRS)

    Wang, J. T.; Lotts, C. G.; Davis, D. D., Jr.; Krishnamurthy, T.

    1992-01-01

    This paper describes a computationally efficient analysis method which was used to predict detailed stress states in a typical composite compression panel with a discontinuous hat stiffener. A global-local approach was used. The global model incorporated both 2D shell and 3D brick elements connected by newly developed transition elements. Most of the panel was modeled with 2D elements, while 3D elements were employed to model the stiffener flange and the adjacent skin. Both linear and geometrically nonlinear analyses were performed on the global model. The effect of geometric nonlinearity induced by the eccentric load path due to the discontinuous hat stiffener was significant. The local model used a fine mesh of 3D brick elements to model the region at the end of the stiffener. Boundary conditions of the local 3D model were obtained by spline interpolation of the nodal displacements from the global analysis. Detailed in-plane and through-the-thickness stresses were calculated in the flange-skin interface near the end of the stiffener.

  2. Handheld camera 3D modeling system using multiple reference panels

    NASA Astrophysics Data System (ADS)

    Fujimura, Kouta; Oue, Yasuhiro; Terauchi, Tomoya; Emi, Tetsuichi

    2002-03-01

    A novel 3D modeling system in which a target object is easily captured and modeled by using a hand-held camera with several reference panels is presented in this paper. The reference panels are designed to be able to obtain the camera position and discriminate between each other. A conventional 3D modeling system using a reference panel has several restrictions regarding the target object, specifically the size and its location. Our system uses multiple reference panels, which are set around the target object to remove these restrictions. The main features of this system are as follows: 1) The whole shape and photo-realistic textures of the target object can be digitized based on several still images or a movie captured by using a hand-held camera; as well as each location of the camera that can be calculated using the reference panels. 2) Our system can be provided as a software product only. That means there are no special requirements for hardware; even the reference panels , because they can be printed from image files or software. 3) This system can be applied to digitize a larger object. In the experiments, we developed and used an interactive region selection tool to detect the silhouette on each image instead of using the chroma -keying method. We have tested our system with a toy object. The calculation time is about 10 minutes (except for the capturing the images and extracting the silhouette by using our tool) on a personal computer with a Pentium-III processor (600MHz) and 320MB memory. However, it depends on how complex the images are and how many images you use. Our future plan is to evaluate the system with various kind of objects, specifically, large ones in outdoor environments.

  3. Laser welding on trough panel: 3D body part

    NASA Astrophysics Data System (ADS)

    Shirai, Masato; Hisano, Hirohiko

    2003-03-01

    Laser welding for automotive bodies has been introduced mainly by European car manufacturers since more than 10 years ago. Their purposes of laser welding introduction were mainly vehicle performance improvement and lightweight. And laser welding was applied to limited portion where shapes of panels are simple and easy to fit welded flanges. Toyota also has introduced laser welding onto 3 dimensional parts named trough panel since 1999. Our purpose of the introduction was common use of equipment. Trough panel has a complex shape and different shapes in each car type. In order to realize common use of welding equipment, we introduced parts locating equipment which had unique, small & simple jigs fo each car type and NC (Numerical Controlled) locators and air-cooled small laser head developed by ourselves to the trough welding process. Laser welding replaced spot welding and was applied linearly like stitches. Length of laser welding was determined according to comparison with statistic tensile strength and fatigue strength of spot welding.

  4. Analysis of Composite Panel-Stiffener Debonding Using a Shell/3D Modeling Technique

    NASA Technical Reports Server (NTRS)

    Krueger, Ronald; Minguet, Pierre J.

    2006-01-01

    Interlaminar fracture mechanics has proven useful for characterizing the onset of delaminations in composites and has been used with limited success primarily to investigate onset in fracture toughness specimens and laboratory size coupon type specimens. Future acceptance of the methodology by industry and certification authorities however, requires the successful demonstration of the methodology on structural level. For this purpose a panel was selected that was reinforced with stringers. Shear loading cases the panel to buckle and the resulting out-of-plane deformations initiate skin/stringer separation at the location of an embedded defect. For finite element analysis, the panel and surrounding load fixture were modeled with shell element. A small section of the stringer foot and the panel in the vicinity of the embedded defect were modeled with a local 3D solid model. A failure index was calculated by correlating computed mixed-mode failure criterion of the graphite/epoxy material.

  5. Analysis of Composite Panel-Stiffener Debonding Using a Shell/3D Modeling Technique

    NASA Technical Reports Server (NTRS)

    Krueger, Ronald; Ratcliffe, James; Minguet, Pierre J.

    2007-01-01

    Interlaminar fracture mechanics has proven useful for characterizing the onset of delaminations in composites and has been used successfully primarily to investigate onset in fracture toughness specimens and laboratory size coupon type specimens. Future acceptance of the methodology by industry and certification authorities, however, requires the successful demonstration of the methodology on the structural level. For this purpose, a panel was selected that is reinforced with stiffeners. Shear loading causes the panel to buckle, and the resulting out-of-plane deformations initiate skin/stiffener separation at the location of an embedded defect. A small section of the stiffener foot, web and noodle as well as the panel skin in the vicinity of the delamination front were modeled with a local 3D solid model. Across the width of the stiffener foot, the mixedmode strain energy release rates were calculated using the virtual crack closure technique. A failure index was calculated by correlating the results with a mixed-mode failure criterion of the graphite/epoxy material. Computed failure indices were compared to corresponding results where the entire web was modeled with shell elements and only a small section of the stiffener foot and panel were modeled locally with solid elements. Including the stiffener web in the local 3D solid model increased the computed failure index. Further including the noodle and transition radius in the local 3D solid model changed the local distribution across the width. The magnitude of the failure index decreased with increasing transition radius and noodle area. For the transition radii modeled, the material properties used for the noodle area had a negligible effect on the results. The results of this study are intended to be used as a guide for conducting finite element and fracture mechanics analyses of delamination and debonding in complex structures such as integrally stiffened panels.

  6. Panel methods: An introduction

    NASA Technical Reports Server (NTRS)

    Erickson, Larry L.

    1990-01-01

    Panel methods are numerical schemes for solving (the Prandtl-Glauert equation) for linear, inviscid, irrotational flow about aircraft flying at subsonic or supersonic speeds. The tools at the panel-method user's disposal are (1) surface panels of source-doublet-vorticity distributions that can represent nearly arbitrary geometry, and (2) extremely versatile boundary condition capabilities that can frequently be used for creative modeling. Panel-method capabilities and limitations, basic concepts common to all panel-method codes, different choices that were made in the implementation of these concepts into working computer programs, and various modeling techniques involving boundary conditions, jump properties, and trailing wakes are discussed. An approach for extending the method to nonlinear transonic flow is also presented. Three appendices supplement the main test. In appendix 1, additional detail is provided on how the basic concepts are implemented into a specific computer program (PANAIR). In appendix 2, it is shown how to evaluate analytically the fundamental surface integral that arises in the expressions for influence-coefficients, and evaluate its jump property. In appendix 3, a simple example is used to illustrate the so-called finite part of the improper integrals.

  7. 3D Face modeling using the multi-deformable method.

    PubMed

    Hwang, Jinkyu; Yu, Sunjin; Kim, Joongrock; Lee, Sangyoun

    2012-01-01

    In this paper, we focus on the problem of the accuracy performance of 3D face modeling techniques using corresponding features in multiple views, which is quite sensitive to feature extraction errors. To solve the problem, we adopt a statistical model-based 3D face modeling approach in a mirror system consisting of two mirrors and a camera. The overall procedure of our 3D facial modeling method has two primary steps: 3D facial shape estimation using a multiple 3D face deformable model and texture mapping using seamless cloning that is a type of gradient-domain blending. To evaluate our method's performance, we generate 3D faces of 30 individuals and then carry out two tests: accuracy test and robustness test. Our method shows not only highly accurate 3D face shape results when compared with the ground truth, but also robustness to feature extraction errors. Moreover, 3D face rendering results intuitively show that our method is more robust to feature extraction errors than other 3D face modeling methods. An additional contribution of our method is that a wide range of face textures can be acquired by the mirror system. By using this texture map, we generate realistic 3D face for individuals at the end of the paper. PMID:23201976

  8. 3D Face Modeling Using the Multi-Deformable Method

    PubMed Central

    Hwang, Jinkyu; Yu, Sunjin; Kim, Joongrock; Lee, Sangyoun

    2012-01-01

    In this paper, we focus on the problem of the accuracy performance of 3D face modeling techniques using corresponding features in multiple views, which is quite sensitive to feature extraction errors. To solve the problem, we adopt a statistical model-based 3D face modeling approach in a mirror system consisting of two mirrors and a camera. The overall procedure of our 3D facial modeling method has two primary steps: 3D facial shape estimation using a multiple 3D face deformable model and texture mapping using seamless cloning that is a type of gradient-domain blending. To evaluate our method's performance, we generate 3D faces of 30 individuals and then carry out two tests: accuracy test and robustness test. Our method shows not only highly accurate 3D face shape results when compared with the ground truth, but also robustness to feature extraction errors. Moreover, 3D face rendering results intuitively show that our method is more robust to feature extraction errors than other 3D face modeling methods. An additional contribution of our method is that a wide range of face textures can be acquired by the mirror system. By using this texture map, we generate realistic 3D face for individuals at the end of the paper. PMID:23201976

  9. A method for the calibration of 3D ultrasound transducers

    NASA Astrophysics Data System (ADS)

    Hastenteufel, Mark; Mottl-Link, Sibylle; Wolf, Ivo; de Simone, Raffaele; Meinzer, Hans-Peter

    2003-05-01

    Background: Three-dimensional (3D) ultrasound has a great potential in medical diagnostics. However, there are also some limitations of 3D ultrasound, e.g., in some situations morphology cannot be imaged accurately due to acoustical shadows. Acquiring 3D datasets from multiple positions can overcome some of these limitations. Prior to that a calibration of the ultrasound probe is necessary. Most calibration methods descibed rely on two-dimensional data. We describe a calibration method that uses 3D data. Methods: We have developed a 3D calibration method based on single-point cross-wire calibration using registration techniques for automatic detection of cross centers. For the calibration a cross consisting of three orthogonal wires is imaged. A model-to-image registration method is used to determine the cross center. Results: Due to the use of 3D data less acquisitions and no special protocols are necessary. The influence of noise is reduced. By means of the registration method the time-consuming steps of image plane alignment and manual cross center determination becomes dispensable. Conclusion: A 3D calibration method for ultrasound transducers is described. The calibration method is the base to extend state-of-the-art 3D ultrasound devices, i.e., to acquire multiple 3D, either morphological or functional (Doppler), datasets.

  10. Method for 3D Airway Topology Extraction

    PubMed Central

    Grothausmann, Roman; Kellner, Manuela; Heidrich, Marko; Lorbeer, Raoul-Amadeus; Ripken, Tammo; Meyer, Heiko; Kuehnel, Mark P.; Ochs, Matthias; Rosenhahn, Bodo

    2015-01-01

    In lungs the number of conducting airway generations as well as bifurcation patterns varies across species and shows specific characteristics relating to illnesses or gene variations. A method to characterize the topology of the mouse airway tree using scanning laser optical tomography (SLOT) tomograms is presented in this paper. It is used to test discrimination between two types of mice based on detected differences in their conducting airway pattern. Based on segmentations of the airways in these tomograms, the main spanning tree of the volume skeleton is computed. The resulting graph structure is used to distinguish between wild type and surfactant protein (SP-D) deficient knock-out mice. PMID:25767561

  11. a Fast Method for Measuring the Similarity Between 3d Model and 3d Point Cloud

    NASA Astrophysics Data System (ADS)

    Zhang, Zongliang; Li, Jonathan; Li, Xin; Lin, Yangbin; Zhang, Shanxin; Wang, Cheng

    2016-06-01

    This paper proposes a fast method for measuring the partial Similarity between 3D Model and 3D point Cloud (SimMC). It is crucial to measure SimMC for many point cloud-related applications such as 3D object retrieval and inverse procedural modelling. In our proposed method, the surface area of model and the Distance from Model to point Cloud (DistMC) are exploited as measurements to calculate SimMC. Here, DistMC is defined as the weighted distance of the distances between points sampled from model and point cloud. Similarly, Distance from point Cloud to Model (DistCM) is defined as the average distance of the distances between points in point cloud and model. In order to reduce huge computational burdens brought by calculation of DistCM in some traditional methods, we define SimMC as the ratio of weighted surface area of model to DistMC. Compared to those traditional SimMC measuring methods that are only able to measure global similarity, our method is capable of measuring partial similarity by employing distance-weighted strategy. Moreover, our method is able to be faster than other partial similarity assessment methods. We demonstrate the superiority of our method both on synthetic data and laser scanning data.

  12. Trapezoidal phase-shifting method for 3D shape measurement

    NASA Astrophysics Data System (ADS)

    Huang, Peisen S.; Zhang, Song; Chiang, Fu-Pen

    2004-12-01

    We propose a novel structured light method, namely trapezoidal phase-shifting method, for 3-D shape measurement. This method uses three patterns coded with phase-shifted, trapezoidal-shaped gray levels. The 3-D information of the object is extracted by direct calculation of an intensity ratio. Theoretical analysis showed that this new method was significantly less sensitive to the defocusing effect of the captured images when compared to the traditional intensity-ratio based methods. This important advantage makes large-depth 3-D shape measurement possible. If compared to the sinusoidal phase-shifting method, the resolution is similar, but the processing speed is at least 4.5 times faster. The feasibility of this method was demonstrated in a previously developed real-time 3-D shape measurement system. The reconstructed 3-D results showed similar quality as those obtained by the sinusoidal phase-shifting method. However, since the processing speed was much faster, we were able to not only acquire the images in real time, but also reconstruct the 3-D shapes in real time (40 fps at a resolution of 532 x 500 pixels). This real-time capability allows us to measure dynamically changing objects, such as human faces. The potential applications of this new method include industrial inspection, reverse engineering, robotic vision, computer graphics, medical diagnosis, etc.

  13. Evaluation of three 3D US calibration methods

    NASA Astrophysics Data System (ADS)

    Hummel, Johann; Kaar, Marcus; Hoffmann, Rainer; Bhatia, Amon; Birkfellner, Wolfgang; Figl, Michael

    2013-03-01

    With the introduction of 3D US image devices the demand for accurate and fast 3D calibration methods arose. We implemented three different calibration methods and compared the calibration results in terms of fiducial registration error (FRE) and target registration error (TRE). The three calibration methods included a multi-points phantom (MP), a feature based model (FM) and a membrane model (MM). With respect to the sphere method a simple point-to-point registration was applied. For the feature based model we employed a phantom consisting of spheres, pyramids and cones. These objects were imaged from different angles and a 3D3D registration was applied for all possible image combinations. The last method was accomplished by imaging a simple membrane which allows for calculation of the calibration matrix. For a first evaluation we computed the FRE for each method. To assess the calibration success on real patient data we used ten 3D3D registrations between images from the prostate. The FRE for the sphere method amounted to 1.40 mm, for the figure method to 1.05 mm and with respect to the membrane method to 1.12 mm. The deviation arising from ten 3D3D patient registration were 3.44 mm (MP), 2.93 mm (FM)and 2.84 mm (MM). The MM revealed to be the most accurate of the evaluated procedure while the MP has shown significant higher errors. The results from FM were close to the one from MM and also significant better than the one with the SM. Between FM and MM no significant difference was to detect.

  14. Investigating 3d Reconstruction Methods for Small Artifacts

    NASA Astrophysics Data System (ADS)

    Evgenikou, V.; Georgopoulos, A.

    2015-02-01

    Small artifacts have always been a real challenge when it comes to 3D modelling. They usually present severe difficulties for their 3D reconstruction. Lately, the demand for the production of 3D models of small artifacts, especially in the cultural heritage domain, has dramatically increased. As with many cases, there are no specifications and standards for this task. This paper investigates the efficiency of several mainly low cost methods for 3D model production of such small artifacts. Moreover, the material, the color and the surface complexity of these objects id also investigated. Both image based and laser scanning methods have been considered as alternative data acquisition methods. The evaluation has been confined to the 3D meshes, as texture depends on the imaging properties, which are not investigated in this project. The resulting meshes have been compared to each other for their completeness, and accuracy. It is hoped that the outcomes of this investigation will be useful to researchers who are planning to embark into mass production of 3D models of small artifacts.

  15. 3-D UNSTRUCTURED HEXAHEDRAL-MESH Sn TRANSPORT METHODS

    SciTech Connect

    J. MOREL; J. MCGHEE; ET AL

    2000-11-01

    This is the final report of a three-year, Laboratory-Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). We have developed a method for solving the neutral-particle transport equation on 3-D unstructured hexahedral meshes using a S{sub n} discretization in angle in conjunction with a discontinuous finite-element discretization in space and a multigroup discretization in energy. Previous methods for solving this equation in 3-D have been limited to rectangular meshes. The unstructured-mesh method that we have developed is far more efficient for solving problems with complex 3-D geometric features than rectangular-mesh methods. In spite of having to make several compromises in our spatial discretization technique and our iterative solution technique, our method has been found to be both accurate and efficient for a broad class of problems.

  16. Improving automated 3D reconstruction methods via vision metrology

    NASA Astrophysics Data System (ADS)

    Toschi, Isabella; Nocerino, Erica; Hess, Mona; Menna, Fabio; Sargeant, Ben; MacDonald, Lindsay; Remondino, Fabio; Robson, Stuart

    2015-05-01

    This paper aims to provide a procedure for improving automated 3D reconstruction methods via vision metrology. The 3D reconstruction problem is generally addressed using two different approaches. On the one hand, vision metrology (VM) systems try to accurately derive 3D coordinates of few sparse object points for industrial measurement and inspection applications; on the other, recent dense image matching (DIM) algorithms are designed to produce dense point clouds for surface representations and analyses. This paper strives to demonstrate a step towards narrowing the gap between traditional VM and DIM approaches. Efforts are therefore intended to (i) test the metric performance of the automated photogrammetric 3D reconstruction procedure, (ii) enhance the accuracy of the final results and (iii) obtain statistical indicators of the quality achieved in the orientation step. VM tools are exploited to integrate their main functionalities (centroid measurement, photogrammetric network adjustment, precision assessment, etc.) into the pipeline of 3D dense reconstruction. Finally, geometric analyses and accuracy evaluations are performed on the raw output of the matching (i.e. the point clouds) by adopting a metrological approach. The latter is based on the use of known geometric shapes and quality parameters derived from VDI/VDE guidelines. Tests are carried out by imaging the calibrated Portable Metric Test Object, designed and built at University College London (UCL), UK. It allows assessment of the performance of the image orientation and matching procedures within a typical industrial scenario, characterised by poor texture and known 3D/2D shapes.

  17. [An integrated segmentation method for 3D ultrasound carotid artery].

    PubMed

    Yang, Xin; Wu, Huihui; Liu, Yang; Xu, Hongwei; Liang, Huageng; Cai, Wenjuan; Fang, Mengjie; Wang, Yujie

    2013-07-01

    An integrated segmentation method for 3D ultrasound carotid artery was proposed. 3D ultrasound image was sliced into transverse, coronal and sagittal 2D images on the carotid bifurcation point. Then, the three images were processed respectively, and the carotid artery contours and thickness were obtained finally. This paper tries to overcome the disadvantages of current computer aided diagnosis method, such as high computational complexity, easily introduced subjective errors et al. The proposed method could get the carotid artery overall information rapidly, accurately and completely. It could be transplanted into clinical usage for atherosclerosis diagnosis and prevention. PMID:24195385

  18. A method to fabricate disconnected silver nanostructures in 3D.

    PubMed

    Vora, Kevin; Kang, SeungYeon; Mazur, Eric

    2012-01-01

    The standard nanofabrication toolkit includes techniques primarily aimed at creating 2D patterns in dielectric media. Creating metal patterns on a submicron scale requires a combination of nanofabrication tools and several material processing steps. For example, steps to create planar metal structures using ultraviolet photolithography and electron-beam lithography can include sample exposure, sample development, metal deposition, and metal liftoff. To create 3D metal structures, the sequence is repeated multiple times. The complexity and difficulty of stacking and aligning multiple layers limits practical implementations of 3D metal structuring using standard nanofabrication tools. Femtosecond-laser direct-writing has emerged as a pre-eminent technique for 3D nanofabrication.(1,2) Femtosecond lasers are frequently used to create 3D patterns in polymers and glasses.(3-7) However, 3D metal direct-writing remains a challenge. Here, we describe a method to fabricate silver nanostructures embedded inside a polymer matrix using a femtosecond laser centered at 800 nm. The method enables the fabrication of patterns not feasible using other techniques, such as 3D arrays of disconnected silver voxels.(8) Disconnected 3D metal patterns are useful for metamaterials where unit cells are not in contact with each other,(9) such as coupled metal dot(10,11)or coupled metal rod(12,13) resonators. Potential applications include negative index metamaterials, invisibility cloaks, and perfect lenses. In femtosecond-laser direct-writing, the laser wavelength is chosen such that photons are not linearly absorbed in the target medium. When the laser pulse duration is compressed to the femtosecond time scale and the radiation is tightly focused inside the target, the extremely high intensity induces nonlinear absorption. Multiple photons are absorbed simultaneously to cause electronic transitions that lead to material modification within the focused region. Using this approach, one can

  19. Symbolic processing methods for 3D visual processing

    NASA Astrophysics Data System (ADS)

    Tedder, Maurice; Hall, Ernest L.

    2001-10-01

    The purpose of this paper is to describe a theory that defines an open method for solving 3D visual data processing and artificial intelligence problems that is independent of hardware or software implementation. The goal of the theory is to generalize and abstract the process of 3D visual processing so that the method can be applied to a wide variety of 3D visual processing problems. Once the theory is described a heuristic derivation is given. Symbolic processing methods can be generalized into an abstract model composed of eight basic components. The symbolic processing model components are: input data; input data interface; symbolic data library; symbolic data environment space; relationship matrix; symbolic logic driver; output data interface and output data. An obstacle detection and avoidance experiment was constructed to demonstrate the symbolic processing method. The results of the robot obstacle avoidance experiment demonstrated that the mobile robot could successfully navigate the obstacle course using symbolic processing methods for the control software. The significance of the symbolic processing approach is that the method arrived at a solution by using a more formal quantifiable process. Some of the practical applications for this theory are: 3D object recognition, obstacle avoidance, and intelligent robot control.

  20. Novel 3D Compression Methods for Geometry, Connectivity and Texture

    NASA Astrophysics Data System (ADS)

    Siddeq, M. M.; Rodrigues, M. A.

    2016-06-01

    A large number of applications in medical visualization, games, engineering design, entertainment, heritage, e-commerce and so on require the transmission of 3D models over the Internet or over local networks. 3D data compression is an important requirement for fast data storage, access and transmission within bandwidth limitations. The Wavefront OBJ (object) file format is commonly used to share models due to its clear simple design. Normally each OBJ file contains a large amount of data (e.g. vertices and triangulated faces, normals, texture coordinates and other parameters) describing the mesh surface. In this paper we introduce a new method to compress geometry, connectivity and texture coordinates by a novel Geometry Minimization Algorithm (GM-Algorithm) in connection with arithmetic coding. First, each vertex ( x, y, z) coordinates are encoded to a single value by the GM-Algorithm. Second, triangle faces are encoded by computing the differences between two adjacent vertex locations, which are compressed by arithmetic coding together with texture coordinates. We demonstrate the method on large data sets achieving compression ratios between 87 and 99 % without reduction in the number of reconstructed vertices and triangle faces. The decompression step is based on a Parallel Fast Matching Search Algorithm (Parallel-FMS) to recover the structure of the 3D mesh. A comparative analysis of compression ratios is provided with a number of commonly used 3D file formats such as VRML, OpenCTM and STL highlighting the performance and effectiveness of the proposed method.

  1. SAMA: A Method for 3D Morphological Analysis.

    PubMed

    Paulose, Tessie; Montévil, Maël; Speroni, Lucia; Cerruti, Florent; Sonnenschein, Carlos; Soto, Ana M

    2016-01-01

    Three-dimensional (3D) culture models are critical tools for understanding tissue morphogenesis. A key requirement for their analysis is the ability to reconstruct the tissue into computational models that allow quantitative evaluation of the formed structures. Here, we present Software for Automated Morphological Analysis (SAMA), a method by which epithelial structures grown in 3D cultures can be imaged, reconstructed and analyzed with minimum human intervention. SAMA allows quantitative analysis of key features of epithelial morphogenesis such as ductal elongation, branching and lumen formation that distinguish different hormonal treatments. SAMA is a user-friendly set of customized macros operated via FIJI (http://fiji.sc/Fiji), an open-source image analysis platform in combination with a set of functions in R (http://www.r-project.org/), an open-source program for statistical analysis. SAMA enables a rapid, exhaustive and quantitative 3D analysis of the shape of a population of structures in a 3D image. SAMA is cross-platform, licensed under the GPLv3 and available at http://montevil.theobio.org/content/sama. PMID:27035711

  2. SAMA: A Method for 3D Morphological Analysis

    PubMed Central

    Cerruti, Florent; Sonnenschein, Carlos; Soto, Ana M.

    2016-01-01

    Three-dimensional (3D) culture models are critical tools for understanding tissue morphogenesis. A key requirement for their analysis is the ability to reconstruct the tissue into computational models that allow quantitative evaluation of the formed structures. Here, we present Software for Automated Morphological Analysis (SAMA), a method by which epithelial structures grown in 3D cultures can be imaged, reconstructed and analyzed with minimum human intervention. SAMA allows quantitative analysis of key features of epithelial morphogenesis such as ductal elongation, branching and lumen formation that distinguish different hormonal treatments. SAMA is a user-friendly set of customized macros operated via FIJI (http://fiji.sc/Fiji), an open-source image analysis platform in combination with a set of functions in R (http://www.r-project.org/), an open-source program for statistical analysis. SAMA enables a rapid, exhaustive and quantitative 3D analysis of the shape of a population of structures in a 3D image. SAMA is cross-platform, licensed under the GPLv3 and available at http://montevil.theobio.org/content/sama. PMID:27035711

  3. Application of 3D reflection seismic methods to mineral exploration

    NASA Astrophysics Data System (ADS)

    Urosevic, Milovan

    2013-04-01

    Seismic exploration for mineral deposits is often tested by excessively complex structures, regolith heterogeneity, intrinsically low signal to noise ratio, ground relief and accessibility. In brown fields, where the majority of the seismic surveys have been conducted, existing infrastructure, old pits and tailings, heavy machinery in operation, mine drainage and other mine related activities are further challenging the application of seismic methods and furthermore increasing its cost. It is therefore not surprising that the mining industry has been reluctant to use seismic methods, particularly 3D for mineral exploration, primarily due to the high cost, but also because of variable performance, and in some cases ambiguous interpretation results. However, shallow mineral reserves are becoming depleted and exploration is moving towards deeper targets. Seismic methods will be more important for deeper investigations and may become the primary exploration tool in the near future. The big issue is if we have an appropriate seismic "strategy" for exploration of deep, complex mineral reserves. From the existing case histories worldwide we know that massive ore deposits (VMS, VHMS) constitute the best case scenario for the application of 3D seismic. Direct targeting of massive ore bodies from seismic has been documented in several case histories. Sediment hosted deposits could, in some cases, can also produce a detectable seismic signature. Other deposit types such as IOCG and skarn are much more challenging for the application of seismic methods. The complexity of these deposits requires new thinking. Several 3D surveys acquired over different deposit types will be presented and discussed.

  4. Breast tumour visualization using 3D quantitative ultrasound methods

    NASA Astrophysics Data System (ADS)

    Gangeh, Mehrdad J.; Raheem, Abdul; Tadayyon, Hadi; Liu, Simon; Hadizad, Farnoosh; Czarnota, Gregory J.

    2016-04-01

    Breast cancer is one of the most common cancer types accounting for 29% of all cancer cases. Early detection and treatment has a crucial impact on improving the survival of affected patients. Ultrasound (US) is non-ionizing, portable, inexpensive, and real-time imaging modality for screening and quantifying breast cancer. Due to these attractive attributes, the last decade has witnessed many studies on using quantitative ultrasound (QUS) methods in tissue characterization. However, these studies have mainly been limited to 2-D QUS methods using hand-held US (HHUS) scanners. With the availability of automated breast ultrasound (ABUS) technology, this study is the first to develop 3-D QUS methods for the ABUS visualization of breast tumours. Using an ABUS system, unlike the manual 2-D HHUS device, the whole patient's breast was scanned in an automated manner. The acquired frames were subsequently examined and a region of interest (ROI) was selected in each frame where tumour was identified. Standard 2-D QUS methods were used to compute spectral and backscatter coefficient (BSC) parametric maps on the selected ROIs. Next, the computed 2-D parameters were mapped to a Cartesian 3-D space, interpolated, and rendered to provide a transparent color-coded visualization of the entire breast tumour. Such 3-D visualization can potentially be used for further analysis of the breast tumours in terms of their size and extension. Moreover, the 3-D volumetric scans can be used for tissue characterization and the categorization of breast tumours as benign or malignant by quantifying the computed parametric maps over the whole tumour volume.

  5. Optical Sensors and Methods for Underwater 3D Reconstruction

    PubMed Central

    Massot-Campos, Miquel; Oliver-Codina, Gabriel

    2015-01-01

    This paper presents a survey on optical sensors and methods for 3D reconstruction in underwater environments. The techniques to obtain range data have been listed and explained, together with the different sensor hardware that makes them possible. The literature has been reviewed, and a classification has been proposed for the existing solutions. New developments, commercial solutions and previous reviews in this topic have also been gathered and considered. PMID:26694389

  6. Method for modeling post-mortem biometric 3D fingerprints

    NASA Astrophysics Data System (ADS)

    Rajeev, Srijith; Shreyas, Kamath K. M.; Agaian, Sos S.

    2016-05-01

    Despite the advancements of fingerprint recognition in 2-D and 3-D domain, authenticating deformed/post-mortem fingerprints continue to be an important challenge. Prior cleansing and reconditioning of the deceased finger is required before acquisition of the fingerprint. The victim's finger needs to be precisely and carefully operated by a medium to record the fingerprint impression. This process may damage the structure of the finger, which subsequently leads to higher false rejection rates. This paper proposes a non-invasive method to perform 3-D deformed/post-mortem finger modeling, which produces a 2-D rolled equivalent fingerprint for automated verification. The presented novel modeling method involves masking, filtering, and unrolling. Computer simulations were conducted on finger models with different depth variations obtained from Flashscan3D LLC. Results illustrate that the modeling scheme provides a viable 2-D fingerprint of deformed models for automated verification. The quality and adaptability of the obtained unrolled 2-D fingerprints were analyzed using NIST fingerprint software. Eventually, the presented method could be extended to other biometric traits such as palm, foot, tongue etc. for security and administrative applications.

  7. Discrete Method of Images for 3D Radio Propagation Modeling

    NASA Astrophysics Data System (ADS)

    Novak, Roman

    2016-09-01

    Discretization by rasterization is introduced into the method of images (MI) in the context of 3D deterministic radio propagation modeling as a way to exploit spatial coherence of electromagnetic propagation for fine-grained parallelism. Traditional algebraic treatment of bounding regions and surfaces is replaced by computer graphics rendering of 3D reflections and double refractions while building the image tree. The visibility of reception points and surfaces is also resolved by shader programs. The proposed rasterization is shown to be of comparable run time to that of the fundamentally parallel shooting and bouncing rays. The rasterization does not affect the signal evaluation backtracking step, thus preserving its advantage over the brute force ray-tracing methods in terms of accuracy. Moreover, the rendering resolution may be scaled back for a given level of scenario detail with only marginal impact on the image tree size. This allows selection of scene optimized execution parameters for faster execution, giving the method a competitive edge. The proposed variant of MI can be run on any GPU that supports real-time 3D graphics.

  8. Parallel 3D Mortar Element Method for Adaptive Nonconforming Meshes

    NASA Technical Reports Server (NTRS)

    Feng, Huiyu; Mavriplis, Catherine; VanderWijngaart, Rob; Biswas, Rupak

    2004-01-01

    High order methods are frequently used in computational simulation for their high accuracy. An efficient way to avoid unnecessary computation in smooth regions of the solution is to use adaptive meshes which employ fine grids only in areas where they are needed. Nonconforming spectral elements allow the grid to be flexibly adjusted to satisfy the computational accuracy requirements. The method is suitable for computational simulations of unsteady problems with very disparate length scales or unsteady moving features, such as heat transfer, fluid dynamics or flame combustion. In this work, we select the Mark Element Method (MEM) to handle the non-conforming interfaces between elements. A new technique is introduced to efficiently implement MEM in 3-D nonconforming meshes. By introducing an "intermediate mortar", the proposed method decomposes the projection between 3-D elements and mortars into two steps. In each step, projection matrices derived in 2-D are used. The two-step method avoids explicitly forming/deriving large projection matrices for 3-D meshes, and also helps to simplify the implementation. This new technique can be used for both h- and p-type adaptation. This method is applied to an unsteady 3-D moving heat source problem. With our new MEM implementation, mesh adaptation is able to efficiently refine the grid near the heat source and coarsen the grid once the heat source passes. The savings in computational work resulting from the dynamic mesh adaptation is demonstrated by the reduction of the the number of elements used and CPU time spent. MEM and mesh adaptation, respectively, bring irregularity and dynamics to the computer memory access pattern. Hence, they provide a good way to gauge the performance of computer systems when running scientific applications whose memory access patterns are irregular and unpredictable. We select a 3-D moving heat source problem as the Unstructured Adaptive (UA) grid benchmark, a new component of the NAS Parallel

  9. SU-E-J-45: The Correlation Between CBCT Flat Panel Misalignment and 3D Image Guidance Accuracy

    SciTech Connect

    Kenton, O; Valdes, G; Yin, L; Teo, B; Brousmiche, S; Wikler, D

    2015-06-15

    Purpose To simulate the impact of CBCT flat panel misalignment on the image quality, the calculated correction vectors in 3D image guided proton therapy and to determine if these calibration errors can be caught in our QA process. Methods The X-ray source and detector geometrical calibration (flexmap) file of the CBCT system in the AdaPTinsight software (IBA proton therapy) was edited to induce known changes in the rotational and translational calibrations of the imaging panel. Translations of up to ±10 mm in the x, y and z directions (see supplemental) and rotational errors of up to ±3° were induced. The calibration files were then used to reconstruct the CBCT image of a pancreatic patient and CatPhan phantom. Correction vectors were calculated for the patient using the software’s auto match system and compared to baseline values. The CatPhan CBCT images were used for quantitative evaluation of image quality for each type of induced error. Results Translations of 1 to 3 mm in the x and y calibration resulted in corresponding correction vector errors of equal magnitude. Similar 10mm shifts were seen in the y-direction; however, in the x-direction, the image quality was too degraded for a match. These translational errors can be identified through differences in isocenter from orthogonal kV images taken during routine QA. Errors in the z-direction had no effect on the correction vector and image quality.Rotations of the imaging panel calibration resulted in corresponding correction vector rotations of the patient images. These rotations also resulted in degraded image quality which can be identified through quantitative image quality metrics. Conclusion Misalignment of CBCT geometry can lead to incorrect translational and rotational patient correction vectors. These errors can be identified through QA of the imaging isocenter as compared to orthogonal images combined with monitoring of CBCT image quality.

  10. Wavefront scanning method for minimum traveltime calculations in 3-D

    SciTech Connect

    Meng, F.; Liu, H.; Li, Y.

    1994-12-31

    This paper proposes an efficient way to calculate the shortest travel-time and its correspondent ray-path in three dimension, by using point secondary approximation to depict the wavefront and propagate the travel-time computation along recursively expanding and contracting cubic boxes. Due to its following advantages: (1) the computation order is O(N), where N is the total number of discrete secondary nodes; (2) the memory occupation is relatively small; (3) the algorithm is robust even for high velocity contrast; (4) the minimum travel-time and raypath are computed accurately, this 3-D wavefront scanning raytracing method promises to be real tool for 3-D seismic prestack migration, velocity analysis as well as forward waveform modeling by Maslov asymptotic ray theory.

  11. Improving Semantic Updating Method on 3d City Models Using Hybrid Semantic-Geometric 3d Segmentation Technique

    NASA Astrophysics Data System (ADS)

    Sharkawi, K.-H.; Abdul-Rahman, A.

    2013-09-01

    to LoD4. The accuracy and structural complexity of the 3D objects increases with the LoD level where LoD0 is the simplest LoD (2.5D; Digital Terrain Model (DTM) + building or roof print) while LoD4 is the most complex LoD (architectural details with interior structures). Semantic information is one of the main components in CityGML and 3D City Models, and provides important information for any analyses. However, more often than not, the semantic information is not available for the 3D city model due to the unstandardized modelling process. One of the examples is where a building is normally generated as one object (without specific feature layers such as Roof, Ground floor, Level 1, Level 2, Block A, Block B, etc). This research attempts to develop a method to improve the semantic data updating process by segmenting the 3D building into simpler parts which will make it easier for the users to select and update the semantic information. The methodology is implemented for 3D buildings in LoD2 where the buildings are generated without architectural details but with distinct roof structures. This paper also introduces hybrid semantic-geometric 3D segmentation method that deals with hierarchical segmentation of a 3D building based on its semantic value and surface characteristics, fitted by one of the predefined primitives. For future work, the segmentation method will be implemented as part of the change detection module that can detect any changes on the 3D buildings, store and retrieve semantic information of the changed structure, automatically updates the 3D models and visualize the results in a userfriendly graphical user interface (GUI).

  12. Method and simulation to study 3D crosstalk perception

    NASA Astrophysics Data System (ADS)

    Khaustova, Dar'ya; Blondé, Laurent; Huynh-Thu, Quan; Vienne, Cyril; Doyen, Didier

    2012-03-01

    To various degrees, all modern 3DTV displays suffer from crosstalk, which can lead to a decrease of both visual quality and visual comfort, and also affect perception of depth. In the absence of a perfect 3D display technology, crosstalk has to be taken into account when studying perception of 3D stereoscopic content. In order to improve 3D presentation systems and understand how to efficiently eliminate crosstalk, it is necessary to understand its impact on human perception. In this paper, we present a practical method to study the perception of crosstalk. The approach consists of four steps: (1) physical measurements of a 3DTV, (2) building of a crosstalk surface based on those measurements and representing specifically the behavior of that 3TV, (3) manipulation of the crosstalk function and application on reference images to produce test images degraded by crosstalk in various ways, and (4) psychophysical tests. Our approach allows both a realistic representation of the behavior of a 3DTV and the easy manipulation of its resulting crosstalk in order to conduct psycho-visual experiments. Our approach can be used in all studies requiring the understanding of how crosstalk affects perception of stereoscopic content and how it can be corrected efficiently.

  13. System and method for 3D printing of aerogels

    DOEpatents

    Worsley, Marcus A.; Duoss, Eric; Kuntz, Joshua; Spadaccini, Christopher; Zhu, Cheng

    2016-03-08

    A method of forming an aerogel. The method may involve providing a graphene oxide powder and mixing the graphene oxide powder with a solution to form an ink. A 3D printing technique may be used to write the ink into a catalytic solution that is contained in a fluid containment member to form a wet part. The wet part may then be cured in a sealed container for a predetermined period of time at a predetermined temperature. The cured wet part may then be dried to form a finished aerogel part.

  14. Method for extracting the aorta from 3D CT images

    NASA Astrophysics Data System (ADS)

    Taeprasartsit, Pinyo; Higgins, William E.

    2007-03-01

    Bronchoscopic biopsy of the central-chest lymph nodes is vital in the staging of lung cancer. Three-dimensional multi-detector CT (MDCT) images provide vivid anatomical detail for planning bronchoscopy. Unfortunately, many lymph nodes are situated close to the aorta, and an inadvertent needle biopsy could puncture the aorta, causing serious harm. As an eventual aid for more complete planning of lymph-node biopsy, it is important to define the aorta. This paper proposes a method for extracting the aorta from a 3D MDCT chest image. The method has two main phases: (1) Off-line Model Construction, which provides a set of training cases for fitting new images, and (2) On-Line Aorta Construction, which is used for new incoming 3D MDCT images. Off-Line Model Construction is done once using several representative human MDCT images and consists of the following steps: construct a likelihood image, select control points of the medial axis of the aortic arch, and recompute the control points to obtain a constant-interval medial-axis model. On-Line Aorta Construction consists of the following operations: construct a likelihood image, perform global fitting of the precomputed models to the current case's likelihood image to find the best fitting model, perform local fitting to adjust the medial axis to local data variations, and employ a region recovery method to arrive at the complete constructed 3D aorta. The region recovery method consists of two steps: model-based and region-growing steps. This region growing method can recover regions outside the model coverage and non-circular tube structures. In our experiments, we used three models and achieved satisfactory results on twelve of thirteen test cases.

  15. A New Navigation Method for 3D Virtual Environment Exploration

    NASA Astrophysics Data System (ADS)

    Haydar, Mahmoud; Maidi, Madjid; Roussel, David; Mallem, Malik

    2009-03-01

    Navigation in virtual environments is a complex task which imposes a high cognitive load on the user. It consists on maintaining knowledge of current position and orientation of the user while he moves through the space. In this paper, we present a novel approach for navigation in 3D virtual environments. The method is based on the principle of skiing, and the idea is to provide to the user a total control of his navigation speed and rotation using his two hands. This technique enables user-steered exploration by determining the direction and the speed of motion using the knowledge of the positions of the user hands. A module of speed control is included to the technique to easily control the speed using the angle between the hands. The direction of motion is given by the orthogonal axis of the segment joining the two hands. A user study will show the efficiency of the method in performing exploration tasks in complex 3D large-scale environments. Furthermore, we proposed an experimental protocol to prove that this technique presents a high level of navigation guidance and control, achieving significantly better performance in comparison to simple navigation techniques.

  16. The development of a 3D risk analysis method.

    PubMed

    I, Yet-Pole; Cheng, Te-Lung

    2008-05-01

    Much attention has been paid to the quantitative risk analysis (QRA) research in recent years due to more and more severe disasters that have happened in the process industries. Owing to its calculation complexity, very few software, such as SAFETI, can really make the risk presentation meet the practice requirements. However, the traditional risk presentation method, like the individual risk contour in SAFETI, is mainly based on the consequence analysis results of dispersion modeling, which usually assumes that the vapor cloud disperses over a constant ground roughness on a flat terrain with no obstructions and concentration fluctuations, which is quite different from the real situations of a chemical process plant. All these models usually over-predict the hazardous regions in order to maintain their conservativeness, which also increases the uncertainty of the simulation results. On the other hand, a more rigorous model such as the computational fluid dynamics (CFD) model can resolve the previous limitations; however, it cannot resolve the complexity of risk calculations. In this research, a conceptual three-dimensional (3D) risk calculation method was proposed via the combination of results of a series of CFD simulations with some post-processing procedures to obtain the 3D individual risk iso-surfaces. It is believed that such technique will not only be limited to risk analysis at ground level, but also be extended into aerial, submarine, or space risk analyses in the near future.

  17. A perceptual preprocess method for 3D-HEVC

    NASA Astrophysics Data System (ADS)

    Shi, Yawen; Wang, Yongfang; Wang, Yubing

    2015-08-01

    A perceptual preprocessing method for 3D-HEVC coding is proposed in the paper. Firstly we proposed a new JND model, which accounts for luminance contrast masking effect, spatial masking effect, and temporal masking effect, saliency characteristic as well as depth information. We utilize spectral residual approach to obtain the saliency map and built a visual saliency factor based on saliency map. In order to distinguish the sensitivity of objects in different depth. We segment each texture frame into foreground and background by a automatic threshold selection algorithm using corresponding depth information, and then built a depth weighting factor. A JND modulation factor is built with a linear combined with visual saliency factor and depth weighting factor to adjust the JND threshold. Then, we applied the proposed JND model to 3D-HEVC for residual filtering and distortion coefficient processing. The filtering process is that the residual value will be set to zero if the JND threshold is greater than residual value, or directly subtract the JND threshold from residual value if JND threshold is less than residual value. Experiment results demonstrate that the proposed method can achieve average bit rate reduction of 15.11%, compared to the original coding scheme with HTM12.1, while maintains the same subjective quality.

  18. The COMET method in 3-D hexagonal geometry

    SciTech Connect

    Connolly, K. J.; Rahnema, F.

    2012-07-01

    The hybrid stochastic-deterministic coarse mesh radiation transport (COMET) method developed at Georgia Tech now solves reactor core problems in 3-D hexagonal geometry. In this paper, the method is used to solve three preliminary test problems designed to challenge the method with steep flux gradients, high leakage, and strong asymmetry and heterogeneity in the core. The test problems are composed of blocks taken from a high temperature test reactor benchmark problem. As the method is still in development, these problems and their results are strictly preliminary. Results are compared to whole core Monte Carlo reference solutions in order to verify the method. Relative errors are on the order of 50 pcm in core eigenvalue, and mean relative error in pin fission density calculations is less than 1% in these difficult test cores. The method requires the one-time pre-computation of a response expansion coefficient library, which may be compiled in a comparable amount of time to a single whole core Monte Carlo calculation. After the library has been computed, COMET may solve any number of core configurations on the order of an hour, representing a significant gain in efficiency over other methods for whole core transport calculations. (authors)

  19. The 3D inelastic analysis methods for hot section components

    NASA Technical Reports Server (NTRS)

    Mcknight, R. L.; Maffeo, R. J.; Tipton, M. T.; Weber, G.

    1992-01-01

    A two-year program to develop advanced 3D inelastic structural stress analysis methods and solution strategies for more accurate and cost effective analysis of combustors, turbine blades, and vanes is described. The approach was to develop a matrix of formulation elements and constitutive models. Three constitutive models were developed in conjunction with optimized iterating techniques, accelerators, and convergence criteria within a framework of dynamic time incrementing. Three formulation models were developed: an eight-noded midsurface shell element; a nine-noded midsurface shell element; and a twenty-noded isoparametric solid element. A separate computer program has been developed for each combination of constitutive model-formulation model. Each program provides a functional stand alone capability for performing cyclic nonlinear structural analysis. In addition, the analysis capabilities incorporated into each program can be abstracted in subroutine form for incorporation into other codes or to form new combinations.

  20. The 3D inelastic analysis methods for hot section components

    NASA Technical Reports Server (NTRS)

    Dame, L. T.; Mcknight, R. L.

    1983-01-01

    The objective of this research is to develop an analytical tool capable of economically evaluating the cyclic time dependent plasticity which occurs in hot section engine components in areas of strain concentration resulting from the combination of both mechanical and thermal stresses. The techniques developed must be capable of accommodating large excursions in temperatures with the associated variations in material properties including plasticity and creep. The overall objective of this proposed program is to develop advanced 3-D inelastic structural/stress analysis methods and solution strategies for more accurate and yet more cost effective analysis of combustors, turbine blades, and vanes. The approach will be to develop four different theories, one linear and three higher order with increasing complexities including embedded singularities.

  1. On 3D inelastic analysis methods for hot section components

    NASA Technical Reports Server (NTRS)

    Mcknight, R. L.; Chen, P. C.; Dame, L. T.; Holt, R. V.; Huang, H.; Hartle, M.; Gellin, S.; Allen, D. H.; Haisler, W. E.

    1986-01-01

    Accomplishments are described for the 2-year program, to develop advanced 3-D inelastic structural stress analysis methods and solution strategies for more accurate and cost effective analysis of combustors, turbine blades and vanes. The approach was to develop a matrix of formulation elements and constitutive models. Three constitutive models were developed in conjunction with optimized iterating techniques, accelerators, and convergence criteria within a framework of dynamic time incrementing. Three formulations models were developed; an eight-noded mid-surface shell element, a nine-noded mid-surface shell element and a twenty-noded isoparametric solid element. A separate computer program was developed for each combination of constitutive model-formulation model. Each program provides a functional stand alone capability for performing cyclic nonlinear structural analysis. In addition, the analysis capabilities incorporated into each program can be abstracted in subroutine form for incorporation into other codes or to form new combinations.

  2. Lattice Boltzmann Method for 3-D Flows with Curved Boundary

    NASA Technical Reports Server (NTRS)

    Mei, Renwei; Shyy, Wei; Yu, Dazhi; Luo, Li-Shi

    2002-01-01

    In this work, we investigate two issues that are important to computational efficiency and reliability in fluid dynamics applications of the lattice, Boltzmann equation (LBE): (1) Computational stability and accuracy of different lattice Boltzmann models and (2) the treatment of the boundary conditions on curved solid boundaries and their 3-D implementations. Three athermal 3-D LBE models (D3QI5, D3Ql9, and D3Q27) are studied and compared in terms of efficiency, accuracy, and robustness. The boundary treatment recently developed by Filippova and Hanel and Met et al. in 2-D is extended to and implemented for 3-D. The convergence, stability, and computational efficiency of the 3-D LBE models with the boundary treatment for curved boundaries were tested in simulations of four 3-D flows: (1) Fully developed flows in a square duct, (2) flow in a 3-D lid-driven cavity, (3) fully developed flows in a circular pipe, and (4) a uniform flow over a sphere. We found that while the fifteen-velocity 3-D (D3Ql5) model is more prone to numerical instability and the D3Q27 is more computationally intensive, the 63Q19 model provides a balance between computational reliability and efficiency. Through numerical simulations, we demonstrated that the boundary treatment for 3-D arbitrary curved geometry has second-order accuracy and possesses satisfactory stability characteristics.

  3. 3D Wavelet-Based Filter and Method

    DOEpatents

    Moss, William C.; Haase, Sebastian; Sedat, John W.

    2008-08-12

    A 3D wavelet-based filter for visualizing and locating structural features of a user-specified linear size in 2D or 3D image data. The only input parameter is a characteristic linear size of the feature of interest, and the filter output contains only those regions that are correlated with the characteristic size, thus denoising the image.

  4. Curriculum Reform in 3D: A Panel of Experts Discuss the New HPE Curriculum in Australia

    ERIC Educational Resources Information Center

    Hickey, Chris; Kirk, David; Macdonald, Doune; Penney, Dawn

    2014-01-01

    This paper was developed at the request of the Organising Committee for the 27th Australian Council for Health, Physical Education and Recreation International Conference, in Melbourne, 2013. Its genesis was as a feature forum, wherein a panel of curriculum experts were bought together to discuss the emergence of the Australian Health and Physical…

  5. Methods for Geometric Data Validation of 3d City Models

    NASA Astrophysics Data System (ADS)

    Wagner, D.; Alam, N.; Wewetzer, M.; Pries, M.; Coors, V.

    2015-12-01

    Geometric quality of 3D city models is crucial for data analysis and simulation tasks, which are part of modern applications of the data (e.g. potential heating energy consumption of city quarters, solar potential, etc.). Geometric quality in these contexts is however a different concept as it is for 2D maps. In the latter case, aspects such as positional or temporal accuracy and correctness represent typical quality metrics of the data. They are defined in ISO 19157 and should be mentioned as part of the metadata. 3D data has a far wider range of aspects which influence their quality, plus the idea of quality itself is application dependent. Thus, concepts for definition of quality are needed, including methods to validate these definitions. Quality on this sense means internal validation and detection of inconsistent or wrong geometry according to a predefined set of rules. A useful starting point would be to have correct geometry in accordance with ISO 19107. A valid solid should consist of planar faces which touch their neighbours exclusively in defined corner points and edges. No gaps between them are allowed, and the whole feature must be 2-manifold. In this paper, we present methods to validate common geometric requirements for building geometry. Different checks based on several algorithms have been implemented to validate a set of rules derived from the solid definition mentioned above (e.g. water tightness of the solid or planarity of its polygons), as they were developed for the software tool CityDoctor. The method of each check is specified, with a special focus on the discussion of tolerance values where they are necessary. The checks include polygon level checks to validate the correctness of each polygon, i.e. closeness of the bounding linear ring and planarity. On the solid level, which is only validated if the polygons have passed validation, correct polygon orientation is checked, after self-intersections outside of defined corner points and edges

  6. Calibration model of a dual gain flat panel detector for 2D and 3D x-ray imaging

    SciTech Connect

    Schmidgunst, C.; Ritter, D.; Lang, E.

    2007-09-15

    The continuing research and further development in flat panel detector technology have led to its integration into more and more medical x-ray systems for two-dimensional (2D) and three-dimensional (3D) imaging, such as fixed or mobile C arms. Besides the obvious advantages of flat panel detectors, like the slim design and the resulting optimum accessibility to the patient, their success is primarily a product of the image quality that can be achieved. The benefits in the physical and performance-related features as opposed to conventional image intensifier systems (e.g., distortion-free reproduction of imaging information or almost linear signal response over a large dynamic range) can be fully exploited, however, only if the raw detector images are correctly calibrated and postprocessed. Previous procedures for processing raw data contain idealizations that, in the real world, lead to artifacts or losses in image quality. Thus, for example, temperature dependencies or changes in beam geometry, as can occur with mobile C arm systems, have not been taken into account up to this time. Additionally, adverse characteristics such as image lag or aging effects have to be compensated to attain the best possible image quality. In this article a procedure is presented that takes into account the important dependencies of the individual pixel sensitivity of flat panel detectors used in 2D or 3D imaging and simultaneously minimizes the work required for an extensive recalibration. It is suitable for conventional detectors with only one gain mode as well as for the detectors specially developed for 3D imaging with dual gain read-out technology.

  7. Unlocking the scientific potential of complex 3D point cloud dataset : new classification and 3D comparison methods

    NASA Astrophysics Data System (ADS)

    Lague, D.; Brodu, N.; Leroux, J.

    2012-12-01

    Ground based lidar and photogrammetric techniques are increasingly used to track the evolution of natural surfaces in 3D at an unprecedented resolution and precision. The range of applications encompass many type of natural surfaces with different geometries and roughness characteristics (landslides, cliff erosion, river beds, bank erosion,....). Unravelling surface change in these contexts requires to compare large point clouds in 2D or 3D. The most commonly used method in geomorphology is based on a 2D difference of the gridded point clouds. Yet this is hardly adapted to many 3D natural environments such as rivers (with horizontal beds and vertical banks), while gridding complex rough surfaces is a complex task. On the other hand, tools allowing to perform 3D comparison are scarce and may require to mesh the point clouds which is difficult on rough natural surfaces. Moreover, existing 3D comparison tools do not provide an explicit calculation of confidence intervals that would factor in registration errors, roughness effects and instrument related position uncertainties. To unlock this problem, we developed the first algorithm combining a 3D measurement of surface change directly on point clouds with an estimate of spatially variable confidence intervals (called M3C2). The method has two steps : (1) surface normal estimation and orientation in 3D at a scale consistent with the local roughness ; (2) measurement of mean surface change along the normal direction with explicit calculation of a local confidence interval. Comparison with existing 3D methods based on a closest-point calculation demonstrates the higher precision of the M3C2 method when mm changes needs to be detected. The M3C2 method is also simple to use as it does not require surface meshing or gridding, and is not sensitive to missing data or change in point density. We also present a 3D classification tool (CANUPO) for vegetation removal based on a new geometrical measure: the multi

  8. Object-oriented urban 3D spatial data model organization method

    NASA Astrophysics Data System (ADS)

    Li, Jing-wen; Li, Wen-qing; Lv, Nan; Su, Tao

    2015-12-01

    This paper combined the 3d data model with object-oriented organization method, put forward the model of 3d data based on object-oriented method, implemented the city 3d model to quickly build logical semantic expression and model, solved the city 3d spatial information representation problem of the same location with multiple property and the same property with multiple locations, designed the space object structure of point, line, polygon, body for city of 3d spatial database, and provided a new thought and method for the city 3d GIS model and organization management.

  9. A method of quantifying moirés on 3D displays

    NASA Astrophysics Data System (ADS)

    Lee, Gwangsoon; Lee, Eung-Don; Kim, Yang-Su; Hur, Namho; Son, Jung-Young

    2016-06-01

    A method of quantifying the amount of moirés in contact-type 3-D displays is described. The color moirés in the displays are induced by the periodic blocking of a part of each pixel on the panel by the boundary lines or the barrier lines consisting of the viewing zone forming optics. The method starts calculating the intensity of an image laden with moirés and that of the image with no moirés. The moirés contrast is defined as the intensity difference of the two images. The contrast values match well with those from the simulated moirés for the crossing angle range of 0° to 20°.

  10. 3D range scan enhancement using image-based methods

    NASA Astrophysics Data System (ADS)

    Herbort, Steffen; Gerken, Britta; Schugk, Daniel; Wöhler, Christian

    2013-10-01

    This paper addresses the problem of 3D surface scan refinement, which is desirable due to noise, outliers, and missing measurements being present in the 3D surfaces obtained with a laser scanner. We present a novel algorithm for the fusion of absolute laser scanner depth profiles and photometrically estimated surface normal data, which yields a noise-reduced and highly detailed depth profile with large scale shape robustness. In contrast to other approaches published in the literature, the presented algorithm (1) regards non-Lambertian surfaces, (2) simultaneously computes surface reflectance (i.e. BRDF) parameters required for 3D reconstruction, (3) models pixelwise incident light and viewing directions, and (4) accounts for interreflections. The algorithm as such relies on the minimization of a three-component error term, which penalizes intensity deviations, integrability deviations, and deviations from the known large-scale surface shape. The solution of the error minimization is obtained iteratively based on a calculus of variations. BRDF parameters are estimated by initially reducing and then iteratively refining the optical resolution, which provides the required robust data basis. The 3D reconstruction of concave surface regions affected by interreflections is improved by compensating global illumination in the image data. The algorithm is evaluated based on eight objects with varying albedos and reflectance behaviors (diffuse, specular, metallic). The qualitative evaluation shows a removal of outliers and a strong reduction of noise, while the large scale shape is preserved. Fine surface details Which are previously not contained in the surface scans, are incorporated through using image data. The algorithm is evaluated with respect to its absolute accuracy using two caliper objects of known shape, and based on synthetically generated data. The beneficial effect of interreflection compensation on the reconstruction accuracy is evaluated quantitatively in a

  11. Parallel 3-D method of characteristics in MPACT

    SciTech Connect

    Kochunas, B.; Dovvnar, T. J.; Liu, Z.

    2013-07-01

    A new parallel 3-D MOC kernel has been developed and implemented in MPACT which makes use of the modular ray tracing technique to reduce computational requirements and to facilitate parallel decomposition. The parallel model makes use of both distributed and shared memory parallelism which are implemented with the MPI and OpenMP standards, respectively. The kernel is capable of parallel decomposition of problems in space, angle, and by characteristic rays up to 0(104) processors. Initial verification of the parallel 3-D MOC kernel was performed using the Takeda 3-D transport benchmark problems. The eigenvalues computed by MPACT are within the statistical uncertainty of the benchmark reference and agree well with the averages of other participants. The MPACT k{sub eff} differs from the benchmark results for rodded and un-rodded cases by 11 and -40 pcm, respectively. The calculations were performed for various numbers of processors and parallel decompositions up to 15625 processors; all producing the same result at convergence. The parallel efficiency of the worst case was 60%, while very good efficiency (>95%) was observed for cases using 500 processors. The overall run time for the 500 processor case was 231 seconds and 19 seconds for the case with 15625 processors. Ongoing work is focused on developing theoretical performance models and the implementation of acceleration techniques to minimize the number of iterations to converge. (authors)

  12. An automated 3D reconstruction method of UAV images

    NASA Astrophysics Data System (ADS)

    Liu, Jun; Wang, He; Liu, Xiaoyang; Li, Feng; Sun, Guangtong; Song, Ping

    2015-10-01

    In this paper a novel fully automated 3D reconstruction approach based on low-altitude unmanned aerial vehicle system (UAVs) images will be presented, which does not require previous camera calibration or any other external prior knowledge. Dense 3D point clouds are generated by integrating orderly feature extraction, image matching, structure from motion (SfM) and multi-view stereo (MVS) algorithms, overcoming many of the cost, time limitations of rigorous photogrammetry techniques. An image topology analysis strategy is introduced to speed up large scene reconstruction by taking advantage of the flight-control data acquired by UAV. Image topology map can significantly reduce the running time of feature matching by limiting the combination of images. A high-resolution digital surface model of the study area is produced base on UAV point clouds by constructing the triangular irregular network. Experimental results show that the proposed approach is robust and feasible for automatic 3D reconstruction of low-altitude UAV images, and has great potential for the acquisition of spatial information at large scales mapping, especially suitable for rapid response and precise modelling in disaster emergency.

  13. Full 3-D transverse oscillations: a method for tissue motion estimation.

    PubMed

    Salles, Sebastien; Liebgott, Hervé; Garcia, Damien; Vray, Didier

    2015-08-01

    We present a new method to estimate 4-D (3-D + time) tissue motion. The method used combines 3-D phase based motion estimation with an unconventional beamforming strategy. The beamforming technique allows us to obtain full 3-D RF volumes with axial, lateral, and elevation modulations. Based on these images, we propose a method to estimate 3-D motion that uses phase images instead of amplitude images. First, volumes featuring 3-D oscillations are created using only a single apodization function, and the 3-D displacement between two consecutive volumes is estimated simultaneously by applying this 3-D estimation. The validity of the method is investigated by conducting simulations and phantom experiments. The results are compared with those obtained with two other conventional estimation methods: block matching and optical flow. The results show that the proposed method outperforms the conventional methods, especially in the transverse directions.

  14. A method of multi-view intraoral 3D measurement

    NASA Astrophysics Data System (ADS)

    Zhao, Huijie; Wang, Zhen; Jiang, Hongzhi; Xu, Yang; Lv, Peijun; Sun, Yunchun

    2015-02-01

    In dental restoration, its important to achieve a high-accuracy digital impression. Most of the existing intraoral measurement systems can only measure the tooth from a single view. Therfore - if we are wilng to acquire the whole data of a tooth, the scans of the tooth from multi-direction ad the data stitching based on the features of the surface are needed, which increases the measurement duration and influence the measurement accuracy. In this paper, we introduce a fringe-projection based on multi-view intraoral measurement system. It can acquire 3D data of the occlusal surface, the buccal surface and the lingual surface of a tooth synchronously, by using a senor with three mirrors, which aim at the three surfaces respectively and thus expand the measuring area. The constant relationship of the three mirrors is calibrated before measurement and can help stitch the data clouds acquired through different mirrors accurately. Therefore the system can obtain the 3D data of a tooth without the need to measure it from different directions for many times. Experiments proved the availability and reliability of this miniaturized measurement system.

  15. Development of CT and 3D-CT Using Flat Panel Detector Based Real-Time Digital Radiography System

    SciTech Connect

    Ravindran, V. R.; Sreelakshmi, C.; Vibin

    2008-09-26

    The application of Digital Radiography in the Nondestructive Evaluation (NDE) of space vehicle components is a recent development in India. A Real-time DR system based on amorphous silicon Flat Panel Detector has been developed for the NDE of solid rocket motors at Rocket Propellant Plant of VSSC in a few years back. The technique has been successfully established for the nondestructive evaluation of solid rocket motors. The DR images recorded for a few solid rocket specimens are presented in the paper. The Real-time DR system is capable of generating sufficient digital X-ray image data with object rotation for the CT image reconstruction. In this paper the indigenous development of CT imaging based on the Realtime DR system for solid rocket motor is presented. Studies are also carried out to generate 3D-CT image from a set of adjacent CT images of the rocket motor. The capability of revealing the spatial location and characterisation of defect is demonstrated by the CT and 3D-CT images generated.

  16. MOM3D method of moments code theory manual

    NASA Technical Reports Server (NTRS)

    Shaeffer, John F.

    1992-01-01

    MOM3D is a FORTRAN algorithm that solves Maxwell's equations as expressed via the electric field integral equation for the electromagnetic response of open or closed three dimensional surfaces modeled with triangle patches. Two joined triangles (couples) form the vector current unknowns for the surface. Boundary conditions are for perfectly conducting or resistive surfaces. The impedance matrix represents the fundamental electromagnetic interaction of the body with itself. A variety of electromagnetic analysis options are possible once the impedance matrix is computed including backscatter radar cross section (RCS), bistatic RCS, antenna pattern prediction for user specified body voltage excitation ports, RCS image projection showing RCS scattering center locations, surface currents excited on the body as induced by specified plane wave excitation, and near field computation for the electric field on or near the body.

  17. 3D sensitivity of 6-electrode Focused Impedance Method (FIM)

    NASA Astrophysics Data System (ADS)

    Masum Iquebal, A. H.; Siddique-e Rabbani, K.

    2010-04-01

    The present work was taken up to have an understanding of the depth sensitivity of the 6 electrode FIM developed by our laboratory earlier, so that it may be applied judiciously for the measurement of organs in 3D, with electrodes on the skin surface. For a fixed electrode geometry sensitivity is expected to depend on the depth, size and conductivity of the target object. With current electrodes 18 cm apart and potential electrodes 5 cm apart, depth sensitivity of spherical conductors, insulators and of pieces of potato of different diameters were measured. The sensitivity dropped sharply with depth gradually leveling off to background, and objects could be sensed down to a depth of about twice their diameters. The sensitivity at a certain depth increases almost linearly with volume for objects with the same conductivity. Thus these results increase confidence in the use of FIM for studying organs at depths of the body.

  18. Development of 3-D Ice Accretion Measurement Method

    NASA Technical Reports Server (NTRS)

    Lee, Sam; Broeren, Andy P.; Addy, Harold E., Jr.; Sills, Robert; Pifer, Ellen M.

    2012-01-01

    A research plan is currently being implemented by NASA to develop and validate the use of a commercial laser scanner to record and archive fully three-dimensional (3-D) ice shapes from an icing wind tunnel. The plan focused specifically upon measuring ice accreted in the NASA Icing Research Tunnel (IRT). The plan was divided into two phases. The first phase was the identification and selection of the laser scanning system and the post-processing software to purchase and develop further. The second phase was the implementation and validation of the selected system through a series of icing and aerodynamic tests. Phase I of the research plan has been completed. It consisted of evaluating several scanning hardware and software systems against an established selection criteria through demonstrations in the IRT. The results of Phase I showed that all of the scanning systems that were evaluated were equally capable of scanning ice shapes. The factors that differentiated the scanners were ease of use and the ability to operate in a wide range of IRT environmental conditions.

  19. Building a 3D Virtual Liver: Methods for Simulating Blood Flow and Hepatic Clearance on 3D Structures.

    PubMed

    White, Diana; Coombe, Dennis; Rezania, Vahid; Tuszynski, Jack

    2016-01-01

    In this paper, we develop a spatio-temporal modeling approach to describe blood and drug flow, as well as drug uptake and elimination, on an approximation of the liver. Extending on previously developed computational approaches, we generate an approximation of a liver, which consists of a portal and hepatic vein vasculature structure, embedded in the surrounding liver tissue. The vasculature is generated via constrained constructive optimization, and then converted to a spatial grid of a selected grid size. Estimates for surrounding upscaled lobule tissue properties are then presented appropriate to the same grid size. Simulation of fluid flow and drug metabolism (hepatic clearance) are completed using discretized forms of the relevant convective-diffusive-reactive partial differential equations for these processes. This results in a single stage, uniformly consistent method to simulate equations for blood and drug flow, as well as drug metabolism, on a 3D structure representative of a liver. PMID:27649537

  20. Building a 3D Virtual Liver: Methods for Simulating Blood Flow and Hepatic Clearance on 3D Structures

    PubMed Central

    Rezania, Vahid; Tuszynski, Jack

    2016-01-01

    In this paper, we develop a spatio-temporal modeling approach to describe blood and drug flow, as well as drug uptake and elimination, on an approximation of the liver. Extending on previously developed computational approaches, we generate an approximation of a liver, which consists of a portal and hepatic vein vasculature structure, embedded in the surrounding liver tissue. The vasculature is generated via constrained constructive optimization, and then converted to a spatial grid of a selected grid size. Estimates for surrounding upscaled lobule tissue properties are then presented appropriate to the same grid size. Simulation of fluid flow and drug metabolism (hepatic clearance) are completed using discretized forms of the relevant convective-diffusive-reactive partial differential equations for these processes. This results in a single stage, uniformly consistent method to simulate equations for blood and drug flow, as well as drug metabolism, on a 3D structure representative of a liver. PMID:27649537

  1. A novel alternative method for 3D visualisation in Parasitology: the construction of a 3D model of a parasite from 2D illustrations.

    PubMed

    Teo, B G; Sarinder, K K S; Lim, L H S

    2010-08-01

    Three-dimensional (3D) models of the marginal hooks, dorsal and ventral anchors, bars and haptoral reservoirs of a parasite, Sundatrema langkawiense Lim & Gibson, 2009 (Monogenea) were developed using the polygonal modelling method in Autodesk 3ds Max (Version 9) based on two-dimensional (2D) illustrations. Maxscripts were written to rotate the modelled 3D structures. Appropriately orientated 3D haptoral hard-parts were then selected and positioned within the transparent 3D outline of the haptor and grouped together to form a complete 3D haptoral entity. This technique is an inexpensive tool for constructing 3D models from 2D illustrations for 3D visualisation of the spatial relationships between the different structural parts within organisms. PMID:20962723

  2. Method for 3D fibre reconstruction on a microrobotic platform.

    PubMed

    Hirvonen, J; Myllys, M; Kallio, P

    2016-07-01

    Automated handling of a natural fibrous object requires a method for acquiring the three-dimensional geometry of the object, because its dimensions cannot be known beforehand. This paper presents a method for calculating the three-dimensional reconstruction of a paper fibre on a microrobotic platform that contains two microscope cameras. The method is based on detecting curvature changes in the fibre centreline, and using them as the corresponding points between the different views of the images. We test the developed method with four fibre samples and compare the results with the references measured with an X-ray microtomography device. We rotate the samples through 16 different orientations on the platform and calculate the three-dimensional reconstruction to test the repeatability of the algorithm and its sensitivity to the orientation of the sample. We also test the noise sensitivity of the algorithm, and record the mismatch rate of the correspondences provided. We use the iterative closest point algorithm to align the measured three-dimensional reconstructions with the references. The average point-to-point distances between the reconstructed fibre centrelines and the references are 20-30 μm, and the mismatch rate is low. Given the manipulation tolerance, this shows that the method is well suited to automated fibre grasping. This has also been demonstrated with actual grasping experiments. PMID:26695385

  3. Boundary estimation method for ultrasonic 3D imaging

    NASA Astrophysics Data System (ADS)

    Ohashi, Gosuke; Ohya, Akihisa; Natori, Michiya; Nakajima, Masato

    1993-09-01

    The authors developed a new method for automatically and efficiently estimating the boundaries of soft tissue and amniotic fluid and to obtain a fine three dimensional image of the fetus from information given by ultrasonic echo images. The aim of this boundary estimation is to provide clear three dimensional images by shading the surface of the fetus and uterine wall using Lambert shading method. Normally there appears a random granular pattern called 'speckle' on an ultrasonic echo image. Therefore, it is difficult to estimate the soft tissue boundary satisfactorily via a simple method such as threshold value processing. Accordingly, the authors devised a method for classifying attributes into three categories using the neural network: soft tissue, amniotic and boundary. The shape of the grey level histogram was the standard for judgment, made by referring to the peripheral region of the voxel. Its application to the clinical data has shown a fine estimation of the boundary between the fetus or the uterine wall and the amniotic, enabling the details of the three dimensional structure to be observed.

  4. Comparison of 3D-OP-OSEM and 3D-FBP reconstruction algorithms for High-Resolution Research Tomograph studies: effects of randoms estimation methods.

    PubMed

    van Velden, Floris H P; Kloet, Reina W; van Berckel, Bart N M; Wolfensberger, Saskia P A; Lammertsma, Adriaan A; Boellaard, Ronald

    2008-06-21

    The High-Resolution Research Tomograph (HRRT) is a dedicated human brain positron emission tomography (PET) scanner. Recently, a 3D filtered backprojection (3D-FBP) reconstruction method has been implemented to reduce bias in short duration frames, currently observed in 3D ordinary Poisson OSEM (3D-OP-OSEM) reconstructions. Further improvements might be expected using a new method of variance reduction on randoms (VRR) based on coincidence histograms instead of using the delayed window technique (DW) to estimate randoms. The goal of this study was to evaluate VRR in combination with 3D-OP-OSEM and 3D-FBP reconstruction techniques. To this end, several phantom studies and a human brain study were performed. For most phantom studies, 3D-OP-OSEM showed higher accuracy of observed activity concentrations with VRR than with DW. However, both positive and negative deviations in reconstructed activity concentrations and large biases of grey to white matter contrast ratio (up to 88%) were still observed as a function of scan statistics. Moreover 3D-OP-OSEM+VRR also showed bias up to 64% in clinical data, i.e. in some pharmacokinetic parameters as compared with those obtained with 3D-FBP+VRR. In the case of 3D-FBP, VRR showed similar results as DW for both phantom and clinical data, except that VRR showed a better standard deviation of 6-10%. Therefore, VRR should be used to correct for randoms in HRRT PET studies.

  5. Comparison of 3D-OP-OSEM and 3D-FBP reconstruction algorithms for High-Resolution Research Tomograph studies: effects of randoms estimation methods

    NASA Astrophysics Data System (ADS)

    van Velden, Floris H. P.; Kloet, Reina W.; van Berckel, Bart N. M.; Wolfensberger, Saskia P. A.; Lammertsma, Adriaan A.; Boellaard, Ronald

    2008-06-01

    The High-Resolution Research Tomograph (HRRT) is a dedicated human brain positron emission tomography (PET) scanner. Recently, a 3D filtered backprojection (3D-FBP) reconstruction method has been implemented to reduce bias in short duration frames, currently observed in 3D ordinary Poisson OSEM (3D-OP-OSEM) reconstructions. Further improvements might be expected using a new method of variance reduction on randoms (VRR) based on coincidence histograms instead of using the delayed window technique (DW) to estimate randoms. The goal of this study was to evaluate VRR in combination with 3D-OP-OSEM and 3D-FBP reconstruction techniques. To this end, several phantom studies and a human brain study were performed. For most phantom studies, 3D-OP-OSEM showed higher accuracy of observed activity concentrations with VRR than with DW. However, both positive and negative deviations in reconstructed activity concentrations and large biases of grey to white matter contrast ratio (up to 88%) were still observed as a function of scan statistics. Moreover 3D-OP-OSEM+VRR also showed bias up to 64% in clinical data, i.e. in some pharmacokinetic parameters as compared with those obtained with 3D-FBP+VRR. In the case of 3D-FBP, VRR showed similar results as DW for both phantom and clinical data, except that VRR showed a better standard deviation of 6-10%. Therefore, VRR should be used to correct for randoms in HRRT PET studies.

  6. Microscopic spin Hamiltonian approaches for 3d8 and 3d2 ions in a trigonal crystal field - perturbation theory methods versus complete diagonalization methods

    NASA Astrophysics Data System (ADS)

    Rudowicz, Czeslaw; Yeung, Yau-yuen; Yang, Zi-Yuan; Qin, Jian

    2002-06-01

    In this paper, we critically review the existing microscopic spin Hamiltonian (MSH) approaches, namely the complete diagonalization method (CDM) and the perturbation theory method (PTM), for 3d8(3d2) ions in a trigonal (C3v, D3, D3d) symmetry crystal field (CF). A new CDM is presented and a CFA/MSH computer package based on our crystal-field analysis (CFA) package for 3dN ions is developed for numerical calculations. Our method takes into account the contribution to the SH parameters (D, g∥ and g⊥) from all 45 CF states for 3d8(3d2) ions and is based on the complete diagonalization of the Hamiltonian including the electrostatic interactions, the CF terms (in the intermediate CF scheme) and the spin-orbit coupling. The CFA/MSH package enables us to study not only the CF energy levels and wavefunctions but also the SH parameters as functions of the CF parameters (B20, B40 and B43 or alternatively Dq, v and v') for 3d8(3d2) ions in trigonal symmetry. Extensive comparative studies of other MSH approaches are carried out using the CFA/MSH package. First, we check the accuracy of the approximate PTM based on the `quasi-fourth-order' perturbation formulae developed by Petrosyan and Mirzakhanyan (PM). The present investigations indicate that the PM formulae for the g-factors (g∥ and g⊥) indeed work well, especially for the cases of small v and v' and large Dq, whereas the PM formula for the zero-field splitting (ZFS) exhibits serious shortcomings. Earlier criticism of the PM approach by Zhou et al (Zhou K W, Zhao S B, Wu P F and Xie J K 1990 Phys. Status Solidi b 162 193) is then revisited. Second, we carry out an extensive comparison of the results of the present CFA/MSH package and those of other CDMs based on the strong- and weak-CF schemes. The CF energy levels and the SH parameters for 3d2 and 3d8 ions at C3v symmetry sites in several crystals are calculated and analysed. Our investigations reveal serious inconsistencies in the CDM results of Zhou et al and Li

  7. GPU Accelerated Spectral Element Methods: 3D Euler equations

    NASA Astrophysics Data System (ADS)

    Abdi, D. S.; Wilcox, L.; Giraldo, F.; Warburton, T.

    2015-12-01

    A GPU accelerated nodal discontinuous Galerkin method for the solution of three dimensional Euler equations is presented. The Euler equations are nonlinear hyperbolic equations that are widely used in Numerical Weather Prediction (NWP). Therefore, acceleration of the method plays an important practical role in not only getting daily forecasts faster but also in obtaining more accurate (high resolution) results. The equation sets used in our atomospheric model NUMA (non-hydrostatic unified model of the atmosphere) take into consideration non-hydrostatic effects that become more important with high resolution. We use algorithms suitable for the single instruction multiple thread (SIMT) architecture of GPUs to accelerate solution by an order of magnitude (20x) relative to CPU implementation. For portability to heterogeneous computing environment, we use a new programming language OCCA, which can be cross-compiled to either OpenCL, CUDA or OpenMP at runtime. Finally, the accuracy and performance of our GPU implementations are veried using several benchmark problems representative of different scales of atmospheric dynamics.

  8. Multi-crosswell profile 3D imaging and method

    DOEpatents

    Washbourne, John K.; Rector, III, James W.; Bube, Kenneth P.

    2002-01-01

    Characterizing the value of a particular property, for example, seismic velocity, of a subsurface region of ground is described. In one aspect, the value of the particular property is represented using at least one continuous analytic function such as a Chebychev polynomial. The seismic data may include data derived from at least one crosswell dataset for the subsurface region of interest and may also include other data. In either instance, data may simultaneously be used from a first crosswell dataset in conjunction with one or more other crosswell datasets and/or with the other data. In another aspect, the value of the property is characterized in three dimensions throughout the region of interest using crosswell and/or other data. In still another aspect, crosswell datasets for highly deviated or horizontal boreholes are inherently useful. The method is performed, in part, by fitting a set of vertically spaced layer boundaries, represented by an analytic function such as a Chebychev polynomial, within and across the region encompassing the boreholes such that a series of layers is defined between the layer boundaries. Initial values of the particular property are then established between the layer boundaries and across the subterranean region using a series of continuous analytic functions. The continuous analytic functions are then adjusted to more closely match the value of the particular property across the subterranean region of ground to determine the value of the particular property for any selected point within the region.

  9. Inhomogeneous Media 3D EM Modeling with Integral Equation Method

    NASA Astrophysics Data System (ADS)

    di, Q.; Wang, R.; An, Z.; Fu, C.; Xu, C.

    2010-12-01

    In general, only the half space of earth is considered in electromagnetic exploration. However, for the long bipole source, because the length is close to the height of ionosphere and also most offsets between source and receivers are equal or larger than the height of ionosphere, the effect of ionosphere on the electromagnetic (EM) field should be considered when observation is carried at a very far (about several thousands kilometers) location away from the source. At this point the problem becomes one which should contain ionosphere, atmosphere and earth that is “earth-ionosphere” case. There are a few of literatures to report the electromagnetic field results which is including ionosphere, atmosphere and earth media at the same time. We firstly calculate the electromagnetic fields with the traditional controlled source (CSEM) configuration using integral equation (IE) method for a three layers earth-ionosphere model. The modeling results agree well with the half space analytical results because the effect of ionosphere for this small scale bipole source can be ignorable. The comparison of small scale three layers earth-ionosphere modeling and half space analytical resolution shows that the IE method can be used to modeling the EM fields for long bipole large offset configuration. In order to discuss EM fields’ characteristics for complicate earth-ionosphere media excited by long bipole source in the far-field and wave-guide zones, we first modeled the decay characters of electromagnetic fields for three layers earth-ionosphere model. Because of the effect of ionosphere, the earth-ionosphere electromagnetic fields’ decay curves with given frequency show that there should be an extra wave guide zone for long bipole artificial source, and there are many different characters between this extra zone and far field zone. They are: 1) the amplitudes of EM fields decay much slower; 2) the polarization patterns change; 3) the positions better to measure Zxy and

  10. FGG-NUFFT-Based Method for Near-Field 3-D Imaging Using Millimeter Waves

    PubMed Central

    Kan, Yingzhi; Zhu, Yongfeng; Tang, Liang; Fu, Qiang; Pei, Hucheng

    2016-01-01

    In this paper, to deal with the concealed target detection problem, an accurate and efficient algorithm for near-field millimeter wave three-dimensional (3-D) imaging is proposed that uses a two-dimensional (2-D) plane antenna array. First, a two-dimensional fast Fourier transform (FFT) is performed on the scattered data along the antenna array plane. Then, a phase shift is performed to compensate for the spherical wave effect. Finally, fast Gaussian gridding based nonuniform FFT (FGG-NUFFT) combined with 2-D inverse FFT (IFFT) is performed on the nonuniform 3-D spatial spectrum in the frequency wavenumber domain to achieve 3-D imaging. The conventional method for near-field 3-D imaging uses Stolt interpolation to obtain uniform spatial spectrum samples and performs 3-D IFFT to reconstruct a 3-D image. Compared with the conventional method, our FGG-NUFFT based method is comparable in both efficiency and accuracy in the full sampled case and can obtain more accurate images with less clutter and fewer noisy artifacts in the down-sampled case, which are good properties for practical applications. Both simulation and experimental results demonstrate that the FGG-NUFFT-based near-field 3-D imaging algorithm can have better imaging performance than the conventional method for down-sampled measurements. PMID:27657066

  11. Investigation on reconstruction methods applied to 3D terahertz computed tomography.

    PubMed

    Recur, B; Younus, A; Salort, S; Mounaix, P; Chassagne, B; Desbarats, P; Caumes, J-P; Abraham, E

    2011-03-14

    3D terahertz computed tomography has been performed using a monochromatic millimeter wave imaging system coupled with an infrared temperature sensor. Three different reconstruction methods (standard back-projection algorithm and two iterative analysis) have been compared in order to reconstruct large size 3D objects. The quality (intensity, contrast and geometric preservation) of reconstructed cross-sectional images has been discussed together with the optimization of the number of projections. Final demonstration to real-life 3D objects has been processed to illustrate the potential of the reconstruction methods for applied terahertz tomography.

  12. Development of a compact 3D shape measurement unit using the light-source-stepping method

    NASA Astrophysics Data System (ADS)

    Fujigaki, Motoharu; Sakaguchi, Toshimasa; Murata, Yorinobu

    2016-10-01

    A compact 3D shape measurement unit that uses the light-source-stepping method (LSSM) is developed. The LSSM proposed by the authors is a phase-shifting fringe projection method for shape measurement. The authors also developed a linear LED device for high-speed shape measurement using the LSSM. A compact and high-speed 3D shape measurement unit can be realized using a linear LED device. However, the LSSM is difficult to utilize because the phase-shifting amount is not uniform. The phase-shifting amount depends on the distance from the grating plate. It is therefore necessary to consider carefully the locations of the linear LED device and the grating plate. In this paper, the design method for a 3D shape measurement unit that uses the LSSM is shown, and a prototype of a compact 3D shape measurement unit with a linear LED device is developed.

  13. A novel 3D stitching method for WLI based large range surface topography measurement

    NASA Astrophysics Data System (ADS)

    Lei, Zili; Liu, Xiaojun; Zhao, Li; Chen, Liangzhou; Li, Qian; Yuan, Tengfei; Lu, Wenlong

    2016-01-01

    3D image stitching is an important technique for large range surface topography measurement in White-Light Interferometry (WLI). However, the stitching accuracy is inevitably influenced by noise. To solve this problem, a novel method for 3D image stitching is proposed in this paper. In this method, based on noise mechanism analysis in WLI measurement, a new definition of noise in 3D image is given by an evaluation model for difference between the practical WLI interference signal and the ideal signal. By this new definition, actual noises in 3D image are identified while those practical singular heights on surface will not be wrongly attributed to noise. With the definition, a binary matrix for noise mark corresponding to 3D image is obtained. Then, the matrix is devoted, as an important component, to establish a series of new algorithms of capability for suppressing the adverse effects of noises in each process of the proposed stitching method. By this method, the influence of the noises on stitching is substantially reduced and the stitching accuracy is improved. Through 3D image stitching experiments with noises in WLI, effectiveness of the proposed method is verified.

  14. 3D X-ray imaging methods in support catheter ablations of cardiac arrhythmias.

    PubMed

    Stárek, Zdeněk; Lehar, František; Jež, Jiří; Wolf, Jiří; Novák, Miroslav

    2014-10-01

    Cardiac arrhythmias are a very frequent illness. Pharmacotherapy is not very effective in persistent arrhythmias and brings along a number of risks. Catheter ablation has became an effective and curative treatment method over the past 20 years. To support complex arrhythmia ablations, the 3D X-ray cardiac cavities imaging is used, most frequently the 3D reconstruction of CT images. The 3D cardiac rotational angiography (3DRA) represents a modern method enabling to create CT like 3D images on a standard X-ray machine equipped with special software. Its advantage lies in the possibility to obtain images during the procedure, decreased radiation dose and reduction of amount of the contrast agent. The left atrium model is the one most frequently used for complex atrial arrhythmia ablations, particularly for atrial fibrillation. CT data allow for creation and segmentation of 3D models of all cardiac cavities. Recently, a research has been made proving the use of 3DRA to create 3D models of other cardiac (right ventricle, left ventricle, aorta) and non-cardiac structures (oesophagus). They can be used during catheter ablation of complex arrhythmias to improve orientation during the construction of 3D electroanatomic maps, directly fused with 3D electroanatomic systems and/or fused with fluoroscopy. An intensive development in the 3D model creation and use has taken place over the past years and they became routinely used during catheter ablations of arrhythmias, mainly atrial fibrillation ablation procedures. Further development may be anticipated in the future in both the creation and use of these models.

  15. 3D modeling method for computer animate based on modified weak structured light method

    NASA Astrophysics Data System (ADS)

    Xiong, Hanwei; Pan, Ming; Zhang, Xiangwei

    2010-11-01

    A simple and affordable 3D scanner is designed in this paper. Three-dimensional digital models are playing an increasingly important role in many fields, such as computer animate, industrial design, artistic design and heritage conservation. For many complex shapes, optical measurement systems are indispensable to acquiring the 3D information. In the field of computer animate, such an optical measurement device is too expensive to be widely adopted, and on the other hand, the precision is not as critical a factor in that situation. In this paper, a new cheap 3D measurement system is implemented based on modified weak structured light, using only a video camera, a light source and a straight stick rotating on a fixed axis. For an ordinary weak structured light configuration, one or two reference planes are required, and the shadows on these planes must be tracked in the scanning process, which destroy the convenience of this method. In the modified system, reference planes are unnecessary, and size range of the scanned objects is expanded widely. A new calibration procedure is also realized for the proposed method, and points cloud is obtained by analyzing the shadow strips on the object. A two-stage ICP algorithm is used to merge the points cloud from different viewpoints to get a full description of the object, and after a series of operations, a NURBS surface model is generated in the end. A complex toy bear is used to verify the efficiency of the method, and errors range from 0.7783mm to 1.4326mm comparing with the ground truth measurement.

  16. A Novel 3D Building Damage Detection Method Using Multiple Overlapping UAV Images

    NASA Astrophysics Data System (ADS)

    Sui, H.; Tu, J.; Song, Z.; Chen, G.; Li, Q.

    2014-09-01

    In this paper, a novel approach is presented that applies multiple overlapping UAV imagesto building damage detection. Traditional building damage detection method focus on 2D changes detection (i.e., those only in image appearance), whereas the 2D information delivered by the images is often not sufficient and accurate when dealing with building damage detection. Therefore the detection of building damage in 3D feature of scenes is desired. The key idea of 3D building damage detection is the 3D Change Detection using 3D point cloud obtained from aerial images through Structure from motion (SFM) techniques. The approach of building damage detection discussed in this paper not only uses the height changes of 3D feature of scene but also utilizes the image's shape and texture feature. Therefore, this method fully combines the 2D and 3D information of the real world to detect the building damage. The results, tested through field study, demonstrate that this method is feasible and effective in building damage detection. It has also shown that the proposed method is easily applicable and suited well for rapid damage assessment after natural disasters.

  17. Accurate compressed look up table method for CGH in 3D holographic display.

    PubMed

    Gao, Chuan; Liu, Juan; Li, Xin; Xue, Gaolei; Jia, Jia; Wang, Yongtian

    2015-12-28

    Computer generated hologram (CGH) should be obtained with high accuracy and high speed in 3D holographic display, and most researches focus on the high speed. In this paper, a simple and effective computation method for CGH is proposed based on Fresnel diffraction theory and look up table. Numerical simulations and optical experiments are performed to demonstrate its feasibility. The proposed method can obtain more accurate reconstructed images with lower memory usage compared with split look up table method and compressed look up table method without sacrificing the computational speed in holograms generation, so it is called accurate compressed look up table method (AC-LUT). It is believed that AC-LUT method is an effective method to calculate the CGH of 3D objects for real-time 3D holographic display where the huge information data is required, and it could provide fast and accurate digital transmission in various dynamic optical fields in the future.

  18. Accurate compressed look up table method for CGH in 3D holographic display.

    PubMed

    Gao, Chuan; Liu, Juan; Li, Xin; Xue, Gaolei; Jia, Jia; Wang, Yongtian

    2015-12-28

    Computer generated hologram (CGH) should be obtained with high accuracy and high speed in 3D holographic display, and most researches focus on the high speed. In this paper, a simple and effective computation method for CGH is proposed based on Fresnel diffraction theory and look up table. Numerical simulations and optical experiments are performed to demonstrate its feasibility. The proposed method can obtain more accurate reconstructed images with lower memory usage compared with split look up table method and compressed look up table method without sacrificing the computational speed in holograms generation, so it is called accurate compressed look up table method (AC-LUT). It is believed that AC-LUT method is an effective method to calculate the CGH of 3D objects for real-time 3D holographic display where the huge information data is required, and it could provide fast and accurate digital transmission in various dynamic optical fields in the future. PMID:26831987

  19. Novel accurate and scalable 3-D MT forward solver based on a contracting integral equation method

    NASA Astrophysics Data System (ADS)

    Kruglyakov, M.; Geraskin, A.; Kuvshinov, A.

    2016-11-01

    We present a novel, open source 3-D MT forward solver based on a method of integral equations (IE) with contracting kernel. Special attention in the solver is paid to accurate calculations of Green's functions and their integrals which are cornerstones of any IE solution. The solver supports massive parallelization and is able to deal with highly detailed and contrasting models. We report results of a 3-D numerical experiment aimed at analyzing the accuracy and scalability of the code.

  20. A multimaterial bioink method for 3D printing tunable, cell-compatible hydrogels.

    PubMed

    Rutz, Alexandra L; Hyland, Kelly E; Jakus, Adam E; Burghardt, Wesley R; Shah, Ramille N

    2015-03-01

    A multimaterial bio-ink method using polyethylene glycol crosslinking is presented for expanding the biomaterial palette required for 3D bioprinting of more mimetic and customizable tissue and organ constructs. Lightly crosslinked, soft hydrogels are produced from precursor solutions of various materials and 3D printed. Rheological and biological characterizations are presented, and the promise of this new bio-ink synthesis strategy is discussed.

  1. A novel method for fabricating curved frequency selective surface via 3D printing technology

    NASA Astrophysics Data System (ADS)

    Liang, Fengchao; Gao, Jinsong

    2014-12-01

    A novel method for fabricating curved frequency selective surfaces with undevelopable curved shape using 3D printing technology was proposed in this paper. First, FSS composed of Y slotted elements that adapt to 0° ~ 70 ° incidences was designed. Then, the 3D model of the curved FSS was created in a 3D modeling software. Next, the 3D model was digitalized into stl format file and then the stl file was inputted into a stereo lithography 3D printer. Next, the prototype of the curved FSS was fabricated by the 3D printer layer by layer. Finally, a 10 μm thick aluminum film was coated on the outer surface of the prototype of the curved FSS by a vacuum coater. The transmission performance of the metallised curved FSS was tested using free space method. It was shown that frequency selection characteristic of the metallised curved FSS reached the requirements of simulation design. The pass-band was in the Ku-band and the transmission rate on center frequency was 63% for nose cone incident direction. This method provides a new way to apply the FSS to arbitrary curved electromagnetic window.

  2. A 3D measurement method based on multi-view fringe projection by using a turntable

    NASA Astrophysics Data System (ADS)

    Song, Li-mei; Gao, Yan-yan; Zhu, Xin-jun; Guo, Qing-hua; Xi, Jiang-tao

    2016-09-01

    In order to get the entire data in the optical measurement, a multi-view three-dimensional (3D) measurement method based on turntable is proposed. In the method, a turntable is used to rotate the object and obtain multi-view point cloud data, and then multi-view point cloud data are registered and integrated into a 3D model. The measurement results are compared with that of the sticking marked point method. Experimental results show that the measurement process of the proposed method is simpler, and the scanning speed and accuracy are improved.

  3. Research of aluminium alloy aerospace structure aperture measurement based on 3D digital speckle correlation method

    NASA Astrophysics Data System (ADS)

    Bai, Lu; Wang, Hongbo; Zhou, Jiangfan; Yang, Rong; Zhang, Hui

    2014-11-01

    In this paper, the aperture change of the aluminium alloy aerospace structure under real load is researched. Static experiments are carried on which is simulated the load environment of flight course. Compared with the traditional methods, through experiments results, it's proved that 3D digital speckle correlation method has good adaptability and precision on testing aperture change, and it can satisfy measurement on non-contact,real-time 3D deformation or stress concentration. The test results of new method is compared with the traditional method.

  4. High efficient methods of content-based 3D model retrieval

    NASA Astrophysics Data System (ADS)

    Wu, Yuanhao; Tian, Ling; Li, Chenggang

    2013-03-01

    Content-based 3D model retrieval is of great help to facilitate the reuse of existing designs and to inspire designers during conceptual design. However, there is still a gap to apply it in industry due to the low time efficiency. This paper presents two new methods with high efficiency to build a Content-based 3D model retrieval system. First, an improvement is made on the "Shape Distribution (D2)" algorithm, and a new algorithm named "Quick D2" is proposed. Four sample 3D mechanical models are used in an experiment to compare the time cost of the two algorithms. The result indicates that the time cost of Quick D2 is much lower than that of D2, while the descriptors extracted by the two algorithms are almost the same. Second, an expandable 3D model repository index method with high performance, namely, RBK index, is presented. On the basis of RBK index, the search space is pruned effectively during the search process, leading to a speed up of the whole system. The factors that influence the values of the key parameters of RBK index are discussed and an experimental method to find the optimal values of the key parameters is given. Finally, "3D Searcher", a content-based 3D model retrieval system is developed. By using the methods proposed, the time cost for the system to respond one query online is reduced by 75% on average. The system has been implemented in a manufacturing enterprise, and practical query examples during a case of the automobile rear axle design are also shown. The research method presented shows a new research perspective and can effectively improve the content-based 3D model retrieval efficiency.

  5. Effects of CT image segmentation methods on the accuracy of long bone 3D reconstructions.

    PubMed

    Rathnayaka, Kanchana; Sahama, Tony; Schuetz, Michael A; Schmutz, Beat

    2011-03-01

    An accurate and accessible image segmentation method is in high demand for generating 3D bone models from CT scan data, as such models are required in many areas of medical research. Even though numerous sophisticated segmentation methods have been published over the years, most of them are not readily available to the general research community. Therefore, this study aimed to quantify the accuracy of three popular image segmentation methods, two implementations of intensity thresholding and Canny edge detection, for generating 3D models of long bones. In order to reduce user dependent errors associated with visually selecting a threshold value, we present a new approach of selecting an appropriate threshold value based on the Canny filter. A mechanical contact scanner in conjunction with a microCT scanner was utilised to generate the reference models for validating the 3D bone models generated from CT data of five intact ovine hind limbs. When the overall accuracy of the bone model is considered, the three investigated segmentation methods generated comparable results with mean errors in the range of 0.18-0.24 mm. However, for the bone diaphysis, Canny edge detection and Canny filter based thresholding generated 3D models with a significantly higher accuracy compared to those generated through visually selected thresholds. This study demonstrates that 3D models with sub-voxel accuracy can be generated utilising relatively simple segmentation methods that are available to the general research community.

  6. Implementation of algebraic stress models in a general 3-D Navier-Stokes method (PAB3D)

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, Khaled S.

    1995-01-01

    A three-dimensional multiblock Navier-Stokes code, PAB3D, which was developed for propulsion integration and general aerodynamic analysis, has been used extensively by NASA Langley and other organizations to perform both internal (exhaust) and external flow analysis of complex aircraft configurations. This code was designed to solve the simplified Reynolds Averaged Navier-Stokes equations. A two-equation k-epsilon turbulence model has been used with considerable success, especially for attached flows. Accurate predicting of transonic shock wave location and pressure recovery in separated flow regions has been more difficult. Two algebraic Reynolds stress models (ASM) have been recently implemented in the code that greatly improved the code's ability to predict these difficult flow conditions. Good agreement with Direct Numerical Simulation (DNS) for a subsonic flat plate was achieved with ASM's developed by Shih, Zhu, and Lumley and Gatski and Speziale. Good predictions were also achieved at subsonic and transonic Mach numbers for shock location and trailing edge boattail pressure recovery on a single-engine afterbody/nozzle model.

  7. Numerical Investigation of 3D multichannel analysis of surface wave method

    NASA Astrophysics Data System (ADS)

    Wang, Limin; Xu, Yixian; Luo, Yinhe

    2015-08-01

    Multichannel analysis of surface wave (MASW) method is an efficient tool to obtain near-surface S-wave velocity, and it has gained popularity in engineering practice. Up to now, most examples of using the MASW technique are focused on 2D models or data from a 1D linear receiver spread. We propose a 3D MASW scheme. A finite-difference (FD) method is used to investigate the method using linear and fan-shaped receiver spreads. Results show that the 3D topography strongly affects propagation of Rayleigh waves. The energy concentration of dispersion image is distorted and bifurcated because of the influence of free-surface topography. These effects are reduced with the 3D MASW method. Lastly we investigate the relation between the array size and the resolution of dispersion measurement.

  8. A transonic rectangular grid embedded panel method

    NASA Technical Reports Server (NTRS)

    Johnson, F. T.; Bussoletti, J. E.; James, R. M.; Young, D. P.; Woo, A. C.

    1982-01-01

    A method is presented that has the potential for solving transonic flow problems about the same complex aircraft configurations currently being analyzed by subsonic panel methods. This method does not require the generation of surface fitted grids. Instead it uses rectangular grids and subgrids together with embedded surface panels on which boundary conditions are imposed. Both the Euler and full potential equations are considered. The method of least squares is used to reduce the solution of these equations to the solution of a sequence of Poisson problems. The Poisson problems are solved using fast Fourier transforms and panel influence coefficient techniques. The overall method is still in its infancy but some two dimensional results are shown illustrating various key features.

  9. Method for making a single-step etch mask for 3D monolithic nanostructures

    NASA Astrophysics Data System (ADS)

    Grishina, D. A.; Harteveld, C. A. M.; Woldering, L. A.; Vos, W. L.

    2015-12-01

    Current nanostructure fabrication by etching is usually limited to planar structures as they are defined by a planar mask. The realization of three-dimensional (3D) nanostructures by etching requires technologies beyond planar masks. We present a method for fabricating a 3D mask that allows one to etch three-dimensional monolithic nanostructures using only CMOS-compatible processes. The mask is written in a hard-mask layer that is deposited on two adjacent inclined surfaces of a Si wafer. By projecting in a single step two different 2D patterns within one 3D mask on the two inclined surfaces, the mutual alignment between the patterns is ensured. Thereby after the mask pattern is defined, the etching of deep pores in two oblique directions yields a three-dimensional structure in Si. As a proof of concept we demonstrate 3D mask fabrication for three-dimensional diamond-like photonic band gap crystals in silicon. The fabricated crystals reveal a broad stop gap in optical reflectivity measurements. We propose how 3D nanostructures with five different Bravais lattices can be realized, namely cubic, tetragonal, orthorhombic, monoclinic and hexagonal, and demonstrate a mask for a 3D hexagonal crystal. We also demonstrate the mask for a diamond-structure crystal with a 3D array of cavities. In general, the 2D patterns on the different surfaces can be completely independently structured and still be in perfect mutual alignment. Indeed, we observe an alignment accuracy of better than 3.0 nm between the 2D mask patterns on the inclined surfaces, which permits one to etch well-defined monolithic 3D nanostructures.

  10. Method for making a single-step etch mask for 3D monolithic nanostructures.

    PubMed

    Grishina, D A; Harteveld, C A M; Woldering, L A; Vos, W L

    2015-12-18

    Current nanostructure fabrication by etching is usually limited to planar structures as they are defined by a planar mask. The realization of three-dimensional (3D) nanostructures by etching requires technologies beyond planar masks. We present a method for fabricating a 3D mask that allows one to etch three-dimensional monolithic nanostructures using only CMOS-compatible processes. The mask is written in a hard-mask layer that is deposited on two adjacent inclined surfaces of a Si wafer. By projecting in a single step two different 2D patterns within one 3D mask on the two inclined surfaces, the mutual alignment between the patterns is ensured. Thereby after the mask pattern is defined, the etching of deep pores in two oblique directions yields a three-dimensional structure in Si. As a proof of concept we demonstrate 3D mask fabrication for three-dimensional diamond-like photonic band gap crystals in silicon. The fabricated crystals reveal a broad stop gap in optical reflectivity measurements. We propose how 3D nanostructures with five different Bravais lattices can be realized, namely cubic, tetragonal, orthorhombic, monoclinic and hexagonal, and demonstrate a mask for a 3D hexagonal crystal. We also demonstrate the mask for a diamond-structure crystal with a 3D array of cavities. In general, the 2D patterns on the different surfaces can be completely independently structured and still be in perfect mutual alignment. Indeed, we observe an alignment accuracy of better than 3.0 nm between the 2D mask patterns on the inclined surfaces, which permits one to etch well-defined monolithic 3D nanostructures. PMID:26581317

  11. Efficient fabrication method of nano-grating for 3D holographic display with full parallax views.

    PubMed

    Wan, Wenqiang; Qiao, Wen; Huang, Wenbin; Zhu, Ming; Fang, Zongbao; Pu, Donglin; Ye, Yan; Liu, Yanhua; Chen, Linsen

    2016-03-21

    Without any special glasses, multiview 3D displays based on the diffractive optics can present high resolution, full-parallax 3D images in an ultra-wide viewing angle. The enabling optical component, namely the phase plate, can produce arbitrarily distributed view zones by carefully designing the orientation and the period of each nano-grating pixel. However, such 3D display screen is restricted to a limited size due to the time-consuming fabricating process of nano-gratings on the phase plate. In this paper, we proposed and developed a lithography system that can fabricate the phase plate efficiently. Here we made two phase plates with full nano-grating pixel coverage at a speed of 20 mm2/mins, a 500 fold increment in the efficiency when compared to the method of E-beam lithography. One 2.5-inch phase plate generated 9-view 3D images with horizontal-parallax, while the other 6-inch phase plate produced 64-view 3D images with full-parallax. The angular divergence in horizontal axis and vertical axis was 1.5 degrees, and 1.25 degrees, respectively, slightly larger than the simulated value of 1.2 degrees by Finite Difference Time Domain (FDTD). The intensity variation was less than 10% for each viewpoint, in consistency with the simulation results. On top of each phase plate, a high-resolution binary masking pattern containing amplitude information of all viewing zone was well aligned. We achieved a resolution of 400 pixels/inch and a viewing angle of 40 degrees for 9-view 3D images with horizontal parallax. In another prototype, the resolution of each view was 160 pixels/inch and the view angle was 50 degrees for 64-view 3D images with full parallax. As demonstrated in the experiments, the homemade lithography system provided the key fabricating technology for multiview 3D holographic display.

  12. Receptor-based 3D-QSAR in Drug Design: Methods and Applications in Kinase Studies.

    PubMed

    Fang, Cheng; Xiao, Zhiyan

    2016-01-01

    Receptor-based 3D-QSAR strategy represents a superior integration of structure-based drug design (SBDD) and three-dimensional quantitative structure-activity relationship (3D-QSAR) analysis. It combines the accurate prediction of ligand poses by the SBDD approach with the good predictability and interpretability of statistical models derived from the 3D-QSAR approach. Extensive efforts have been devoted to the development of receptor-based 3D-QSAR methods and two alternative approaches have been exploited. One associates with computing the binding interactions between a receptor and a ligand to generate structure-based descriptors for QSAR analyses. The other concerns the application of various docking protocols to generate optimal ligand poses so as to provide reliable molecular alignments for the conventional 3D-QSAR operations. This review highlights new concepts and methodologies recently developed in the field of receptorbased 3D-QSAR, and in particular, covers its application in kinase studies.

  13. 2D-3D hybrid stabilized finite element method for tsunami runup simulations

    NASA Astrophysics Data System (ADS)

    Takase, S.; Moriguchi, S.; Terada, K.; Kato, J.; Kyoya, T.; Kashiyama, K.; Kotani, T.

    2016-09-01

    This paper presents a two-dimensional (2D)-three-dimensional (3D) hybrid stabilized finite element method that enables us to predict a propagation process of tsunami generated in a hypocentral region, which ranges from offshore propagation to runup to urban areas, with high accuracy and relatively low computational costs. To be more specific, the 2D shallow water equation is employed to simulate the propagation of offshore waves, while the 3D Navier-Stokes equation is employed for the runup in urban areas. The stabilized finite element method is utilized for numerical simulations for both of the 2D and 3D domains that are independently discretized with unstructured meshes. The multi-point constraint and transmission methods are applied to satisfy the continuity of flow velocities and pressures at the interface between the resulting 2D and 3D meshes, since neither their spatial dimensions nor node arrangements are consistent. Numerical examples are presented to demonstrate the performance of the proposed hybrid method to simulate tsunami behavior, including offshore propagation and runup to urban areas, with substantially lower computation costs in comparison with full 3D computations.

  14. Chlamydomonas cryopreparation methods for the 3-D analysis of cellular organelles.

    PubMed

    O'Toole, Eileen T

    2010-01-01

    Chlamydomonas reinhardtii is a popular model organism in modern cell biology. Historically, methods for preparing this cell for transmission electron microscopy have used conventional chemical fixation that can result in artifacts that affect the 3-D organization of the cell. We have developed improved methods of specimen preparation that involve high-pressure freezing followed by freeze-substitution that are particularly well suited for 3-D studies (O'Toole et al., 2003, 2007). In this chapter, we describe the details of our cryopreparation methods for the optimal preservation of whole cells for immunocytochemistry and electron tomography. Examples are presented that show the utility of this approach for studying the 3-D architecture of membrane systems and cytoskeletal arrays in intact cells.

  15. Analysis of corner cracks at hole by a 3-D weight function method with stresses from finite element method

    NASA Technical Reports Server (NTRS)

    Zhao, W.; Newman, J. C., Jr.; Sutton, M. A.; Wu, X. R.; Shivakumar, K. N.

    1995-01-01

    Stress intensity factors for quarter-elliptical corner cracks emanating from a circular hole are determined using a 3-D weight function method combined with a 3-D finite element method. The 3-D finite element method is used to analyze uncracked configuration and provide stress distribution in the region where crack is to occur. Using this stress distribution as input, the 3-D weight function method is used to determine stress intensity factors. Three different loading conditions, i.e. remote tension, remote bending and wedge loading, are considered for a wide range in geometrical parameters. The significance in using 3-D uncracked stress distribution and the difference between single and double corner cracks are studied. Typical crack opening displacements are also provided. Comparisons are made with solutions available in the literature.

  16. Detecting and estimating errors in 3D restoration methods using analog models.

    NASA Astrophysics Data System (ADS)

    José Ramón, Ma; Pueyo, Emilio L.; Briz, José Luis

    2015-04-01

    Some geological scenarios may be important for a number of socio-economic reasons, such as water or energy resources, but the available underground information is often limited, scarce and heterogeneous. A truly 3D reconstruction, which is still necessary during the decision-making process, may have important social and economic implications. For this reason, restoration methods were developed. By honoring some geometric or mechanical laws, they help build a reliable image of the subsurface. Pioneer methods were firstly applied in 2D (balanced and restored cross-sections) during the sixties and seventies. Later on, and due to the improvements of computational capabilities, they were extended to 3D. Currently, there are some academic and commercial restoration solutions; Unfold by the Université de Grenoble, Move by Midland Valley Exploration, Kine3D (on gOcad code) by Paradigm, Dynel3D by igeoss-Schlumberger. We have developed our own restoration method, Pmag3Drest (IGME-Universidad de Zaragoza), which is designed to tackle complex geometrical scenarios using paleomagnetic vectors as a pseudo-3D indicator of deformation. However, all these methods have limitations based on the assumptions they need to establish. For this reason, detecting and estimating uncertainty in 3D restoration methods is of key importance to trust the reconstructions. Checking the reliability and the internal consistency of every method, as well as to compare the results among restoration tools, is a critical issue never tackled so far because of the impossibility to test out the results in Nature. To overcome this problem we have developed a technique using analog models. We built complex geometric models inspired in real cases of superposed and/or conical folding at laboratory scale. The stratigraphic volumes were modeled using EVA sheets (ethylene vinyl acetate). Their rheology (tensile and tear strength, elongation, density etc) and thickness can be chosen among a large number of values

  17. [A positioning error measurement method in radiotherapy based on 3D visualization].

    PubMed

    An, Ji-Ye; Li, Yue-Xi; Lu, Xu-Dong; Duan, Hui-Long

    2007-09-01

    The positioning error in radiotherapy is one of the most important factors that influence the location precision of the tumor. Based on the CT-on-rails technology, this paper describes the research on measuring the positioning error in radiotherapy by comparing the planning CT images with the treatment CT images using 3-dimension (3D) methods. It can help doctors to measure positioning errors more accurately than 2D methods. It also supports the powerful 3D interaction such as drag-dropping, rotating and picking-up the object, so that doctors can visualize and measure the positioning errors intuitively.

  18. A Multiscale Constraints Method Localization of 3D Facial Feature Points

    PubMed Central

    Li, Hong-an; Zhang, Yongxin; Li, Zhanli; Li, Huilin

    2015-01-01

    It is an important task to locate facial feature points due to the widespread application of 3D human face models in medical fields. In this paper, we propose a 3D facial feature point localization method that combines the relative angle histograms with multiscale constraints. Firstly, the relative angle histogram of each vertex in a 3D point distribution model is calculated; then the cluster set of the facial feature points is determined using the cluster algorithm. Finally, the feature points are located precisely according to multiscale integral features. The experimental results show that the feature point localization accuracy of this algorithm is better than that of the localization method using the relative angle histograms. PMID:26539244

  19. A Review of Failure Analysis Methods for Advanced 3D Microelectronic Packages

    NASA Astrophysics Data System (ADS)

    Li, Yan; Srinath, Purushotham Kaushik Muthur; Goyal, Deepak

    2016-01-01

    Advanced three dimensional (3D) packaging is a key enabler in driving form factor reduction, performance benefits, and package cost reduction, especially in the fast paced mobility and ultraportable consumer electronics segments. The high level of functional integration and the complex package architecture pose a significant challenge for conventional fault isolation (FI) and failure analysis (FA) methods. Innovative FI/FA tools and techniques are required to tackle the technical and throughput challenges. In this paper, the applications of FI and FA techniques such as Electro Optic Terahertz Pulse Reflectometry, 3D x-ray computed tomography, lock-in thermography, and novel physical sample preparation methods to 3D packages with package on package and stacked die with through silicon via configurations are reviewed, along with the key FI and FA challenges.

  20. A 3-D visualization method for image-guided brain surgery.

    PubMed

    Bourbakis, N G; Awad, M

    2003-01-01

    This paper deals with a 3D methodology for brain tumor image-guided surgery. The methodology is based on development of a visualization process that mimics the human surgeon behavior and decision-making. In particular, it originally constructs a 3D representation of a tumor by using the segmented version of the 2D MRI images. Then it develops an optimal path for the tumor extraction based on minimizing the surgical effort and penetration area. A cost function, incorporated in this process, minimizes the damage surrounding healthy tissues taking into consideration the constraints of a new snake-like surgical tool proposed here. The tumor extraction method presented in this paper is compared with the ordinary method used on brain surgery, which is based on a straight-line based surgical tool. Illustrative examples based on real simulations present the advantages of the 3D methodology proposed here.

  1. Multiplexing encoding method for full-color dynamic 3D holographic display.

    PubMed

    Xue, Gaolei; Liu, Juan; Li, Xin; Jia, Jia; Zhang, Zhao; Hu, Bin; Wang, Yongtian

    2014-07-28

    The multiplexing encoding method is proposed and demonstrated for reconstructing colorful images accurately by using single phase-only spatial light modulator (SLM). It will encode the light waves at different wavelengths into one pure-phase hologram at the same time based on the analytic formulas. The three-dimensional (3D) images can be reconstructed clearly when the light waves at different wavelengths are incident into the encoding hologram. Numerical simulations and optical experiments for 2D and 3D colorful images are performed. The results show that the colorful reconstructed images with high quality are achieved successfully. The proposed multiplexing method is a simple and fast encoding approach and the size of the system is small and compact. It is expected to be used for realizing full-color 3D holographic display in future.

  2. A correction method for range walk error in photon counting 3D imaging LIDAR

    NASA Astrophysics Data System (ADS)

    He, Weiji; Sima, Boyu; Chen, Yunfei; Dai, Huidong; Chen, Qian; Gu, Guohua

    2013-11-01

    A correction method for the range walk error is presented in this paper, which is based on a priori modeling and suitable for the GmAPD photon counting three-dimensional(3D) imaging LIDAR. The range walk error is mainly brought in by the fluctuation in number of photons in the laser echo pulse. In this paper, the priori model of range walk error was established, and the function relationship between the range walk error and the laser pulse response rate was determined using the numerical fitting. With this function, the range walk error of original 3D range image was forecasted and the corresponding compensated image of range walk error was obtained to correct the original 3D range image. The experimental results showed that the correction method could reduce the range walk error effectively, and it is particularly suitable for the case that there are significant differences of material properties or reflection characteristics in the scene.

  3. A simple method for the production of anti-C3d monoclonal antibody.

    PubMed

    Cruz, Carlos; León, Graciela

    2007-12-01

    Production of monoclonal antibodies to C3d usually involves the purification of protein. Our method does not require C3 purification; it relies on attachment of C3b to mouse erythrocytes by activation of alternative pathways and further conversion in C3d. We prepared human complement-coated mouse red cells and sensitized mice of the same strain with our own schedule of immunization and applied the classical methods to obtain a mouse monoclonal antibody. We obtained a clone called BMS-11 which produces a monoclonal antibody of IgM class, to C3d with a title of 1:500000. The monoclonal antibody obtained has shown that it is suitable for use as an antiglobulin reagent.

  4. Device and methods for "gold standard" registration of clinical 3D and 2D cerebral angiograms

    NASA Astrophysics Data System (ADS)

    Madan, Hennadii; Likar, Boštjan; Pernuš, Franjo; Å piclin, Žiga

    2015-03-01

    Translation of any novel and existing 3D-2D image registration methods into clinical image-guidance systems is limited due to lack of their objective validation on clinical image datasets. The main reason is that, besides the calibration of the 2D imaging system, a reference or "gold standard" registration is very difficult to obtain on clinical image datasets. In the context of cerebral endovascular image-guided interventions (EIGIs), we present a calibration device in the form of a headband with integrated fiducial markers and, secondly, propose an automated pipeline comprising 3D and 2D image processing, analysis and annotation steps, the result of which is a retrospective calibration of the 2D imaging system and an optimal, i.e., "gold standard" registration of 3D and 2D images. The device and methods were used to create the "gold standard" on 15 datasets of 3D and 2D cerebral angiograms, whereas each dataset was acquired on a patient undergoing EIGI for either aneurysm coiling or embolization of arteriovenous malformation. The use of the device integrated seamlessly in the clinical workflow of EIGI. While the automated pipeline eliminated all manual input or interactive image processing, analysis or annotation. In this way, the time to obtain the "gold standard" was reduced from 30 to less than one minute and the "gold standard" of 3D-2D registration on all 15 datasets of cerebral angiograms was obtained with a sub-0.1 mm accuracy.

  5. Uncovering the true nature of deformation microstructures using 3D analysis methods

    NASA Astrophysics Data System (ADS)

    Ferry, M.; Quadir, M. Z.; Afrin, N.; Xu, W.; Loeb, A.; Soe, B.; McMahon, C.; George, C.; Bassman, L.

    2015-08-01

    Three-dimensional electron backscatter diffraction (3D EBSD) has emerged as a powerful technique for generating 3D crystallographic information in reasonably large volumes of a microstructure. The technique uses a focused ion beam (FIB) as a high precision serial sectioning device for generating consecutive ion milled surfaces of a material, with each milled surface subsequently mapped by EBSD. The successive EBSD maps are combined using a suitable post-processing method to generate a crystallographic volume of the microstructure. The first part of this paper shows the usefulness of 3D EBSD for understanding the origin of various structural features associated with the plastic deformation of metals. The second part describes a new method for automatically identifying the various types of low and high angle boundaries found in deformed and annealed metals, particularly those associated with grains exhibiting subtle and gradual variations in orientation. We have adapted a 2D image segmentation technique, fast multiscale clustering, to 3D EBSD data using a novel variance function to accommodate quaternion data. This adaptation is capable of segmenting based on subtle and gradual variation as well as on sharp boundaries within the data. We demonstrate the excellent capabilities of this technique with application to 3D EBSD data sets generated from a range of cold rolled and annealed metals described in the paper.

  6. Investigation of Presage 3D Dosimetry as a Method of Clinically Intuitive Quality Assurance and Comparison to a Semi-3D Delta4 System

    NASA Astrophysics Data System (ADS)

    Crockett, Ethan Van

    The need for clinically intuitive metrics for patient-specific quality assurance in radiation therapy has been well-documented (Zhen, Nelms et al. 2011). A novel transform method has shown to be effective at converting full-density 3D dose measurements made in a phantom to dose values in the patient geometry, enabling comparisons using clinically intuitive metrics such as dose-volume histograms (Oldham et al. 2011). This work investigates the transform method and compares its calculated dose-volume histograms (DVHs) to DVH values calculated by a Delta4 QA device (Scandidos), marking the first comparison of a true 3D system to a semi-3D device using clinical metrics. Measurements were made using Presage 3D dosimeters, which were readout by an in-house optical-CT scanner. Three patient cases were chosen for the study: one head-and-neck VMAT treatment and two spine IMRT treatments. The transform method showed good agreement with the planned dose values for all three cases. Furthermore, the transformed DVHs adhered to the planned dose with more accuracy than the Delta4 DVHs. The similarity between the Delta4 DVHs and the transformed DVHs, however, was greater for one of the spine cases than it was for the head-and-neck case, implying that the accuracy of the Delta4 Anatomy software may vary from one treatment site to another. Overall, the transform method, which incorporates data from full-density 3D dose measurements, provides clinically intuitive results that are more accurate and consistent than the corresponding results from a semi-3D Delta 4 system.

  7. Methods of constructing a 3D geological model from scatter data

    SciTech Connect

    Horsman, J.; Bethel, W.

    1995-04-01

    Most geoscience applications, such as assessment of an oil reservoir or hazardous waste site, require geological characterization of the site. Geological characterization involves analysis of spatial distributions of lithology, porosity, etc. Because of the complexity of the spatial relationships, the authors find that a 3-D model of geology is better suited for integration of many different types of data and provides a better representation of a site than a 2-D one. A 3-D model of geology is constructed from sample data obtained from field measurements, which are usually scattered. To create a volume model from scattered data, interpolation between points is required. The interpolation can be computed using one of several computational algorithms. Alternatively, a manual method may be employed, in which an interactive graphics device is used to input by hand the information that lies between the data points. For example, a mouse can be used to draw lines connecting data points with equal values. The combination of these two methods presents yet another approach. In this study, the authors will compare selected methods of 3-D geological modeling, They used a flow-based, modular visualization environment (AVS) to construct the geological models computationally. Within this system, they used three modules, scat{_}3d, trivar and scatter{_}to{_}ucd, as examples of computational methods. They compare these methods to the combined manual and computational approach. Because there are no tools readily available in AVS for this type of construction, they used a geological modeling system to demonstrate this method.

  8. A 3-D aerodynamic method for the analysis of isolated horizontal-axis wind turbines

    SciTech Connect

    Ammara, I.; Masson, C.; Paraschivoiu, I.

    1997-12-31

    In most existing performance-analysis methods, wind turbines are considered isolated so that interference effects caused by other rotors or by the site topography are neglected. The main objective of this paper is to propose a practical 3-D method suitable for the study of these effects, in order to optimize the arrangement and the positioning of Horizontal-Axis Wind Turbines (HAWTs) in a wind farm. In the proposed methodology, the flow field around isolated HAWTs is predicted by solving the 3-D, time-averaged, steady-state, incompressible, Navier-Stokes equations in which the turbines are represented by distributions of momentum sources. The resulting governing equations are solved using a Control-Volume Finite Element Method (CVFEM). The fundamental aspects related to the development of a practical 3-D method are discussed in this paper, with an emphasis on some of the challenges that arose during its implementation. The current implementation is limited to the analysis of isolated HAWTs. Preliminary results have indicated that, the proposed 3-D method reaches the same level of accuracy, in terms of performance predictions, that the previously developed 2-D axisymmetric model and the well-known momentum-strip theory, while still using reasonable computers resources. It can be considered as a useful tool for the design of HAWTs. Its main advantages, however, are its intrinsic capacity to predict the details of the flow in the wake, and its capabilities of modelling arbitrary wind-turbine arrangements and including ground effects.

  9. High fidelity digital inline holographic method for 3D flow measurements.

    PubMed

    Toloui, Mostafa; Hong, Jiarong

    2015-10-19

    Among all the 3D optical flow diagnostic techniques, digital inline holographic particle tracking velocimetry (DIH-PTV) provides the highest spatial resolution with low cost, simple and compact optical setups. Despite these advantages, DIH-PTV suffers from major limitations including poor longitudinal resolution, human intervention (i.e. requirement for manually determined tuning parameters during tracer field reconstruction and extraction), limited tracer concentration, and expensive computations. These limitations prevent this technique from being widely used for high resolution 3D flow measurements. In this study, we present a novel holographic particle extraction method with the goal of overcoming all the major limitations of DIH-PTV. The proposed method consists of multiple steps involving 3D deconvolution, automatic signal-to-noise ratio enhancement and thresholding, and inverse iterative particle extraction. The entire method is implemented using GPU-based algorithm to increase the computational speed significantly. Validated with synthetic particle holograms, the proposed method can achieve particle extraction rate above 95% with fake particles less than 3% and maximum position error below 1.6 particle diameter for holograms with particle concentration above 3000 particles/mm3. The applicability of the proposed method for DIH-PTV has been further validated using the experiment of laminar flow in a microchannel and the synthetic tracer flow fields generated using a DNS turbulent channel flow database. Such improvements will substantially enhance the implementation of DIH-PTV for 3D flow measurements and enable the potential commercialization of this technique. PMID:26480377

  10. Accident or homicide--virtual crime scene reconstruction using 3D methods.

    PubMed

    Buck, Ursula; Naether, Silvio; Räss, Beat; Jackowski, Christian; Thali, Michael J

    2013-02-10

    The analysis and reconstruction of forensically relevant events, such as traffic accidents, criminal assaults and homicides are based on external and internal morphological findings of the injured or deceased person. For this approach high-tech methods are gaining increasing importance in forensic investigations. The non-contact optical 3D digitising system GOM ATOS is applied as a suitable tool for whole body surface and wound documentation and analysis in order to identify injury-causing instruments and to reconstruct the course of event. In addition to the surface documentation, cross-sectional imaging methods deliver medical internal findings of the body. These 3D data are fused into a whole body model of the deceased. Additional to the findings of the bodies, the injury inflicting instruments and incident scene is documented in 3D. The 3D data of the incident scene, generated by 3D laser scanning and photogrammetry, is also included into the reconstruction. Two cases illustrate the methods. In the fist case a man was shot in his bedroom and the main question was, if the offender shot the man intentionally or accidentally, as he declared. In the second case a woman was hit by a car, driving backwards into a garage. It was unclear if the driver drove backwards once or twice, which would indicate that he willingly injured and killed the woman. With this work, we demonstrate how 3D documentation, data merging and animation enable to answer reconstructive questions regarding the dynamic development of patterned injuries, and how this leads to a real data based reconstruction of the course of event. PMID:22727689

  11. Accident or homicide--virtual crime scene reconstruction using 3D methods.

    PubMed

    Buck, Ursula; Naether, Silvio; Räss, Beat; Jackowski, Christian; Thali, Michael J

    2013-02-10

    The analysis and reconstruction of forensically relevant events, such as traffic accidents, criminal assaults and homicides are based on external and internal morphological findings of the injured or deceased person. For this approach high-tech methods are gaining increasing importance in forensic investigations. The non-contact optical 3D digitising system GOM ATOS is applied as a suitable tool for whole body surface and wound documentation and analysis in order to identify injury-causing instruments and to reconstruct the course of event. In addition to the surface documentation, cross-sectional imaging methods deliver medical internal findings of the body. These 3D data are fused into a whole body model of the deceased. Additional to the findings of the bodies, the injury inflicting instruments and incident scene is documented in 3D. The 3D data of the incident scene, generated by 3D laser scanning and photogrammetry, is also included into the reconstruction. Two cases illustrate the methods. In the fist case a man was shot in his bedroom and the main question was, if the offender shot the man intentionally or accidentally, as he declared. In the second case a woman was hit by a car, driving backwards into a garage. It was unclear if the driver drove backwards once or twice, which would indicate that he willingly injured and killed the woman. With this work, we demonstrate how 3D documentation, data merging and animation enable to answer reconstructive questions regarding the dynamic development of patterned injuries, and how this leads to a real data based reconstruction of the course of event.

  12. Estimating the complexity of 3D structural models using machine learning methods

    NASA Astrophysics Data System (ADS)

    Mejía-Herrera, Pablo; Kakurina, Maria; Royer, Jean-Jacques

    2016-04-01

    Quantifying the complexity of 3D geological structural models can play a major role in natural resources exploration surveys, for predicting environmental hazards or for forecasting fossil resources. This paper proposes a structural complexity index which can be used to help in defining the degree of effort necessary to build a 3D model for a given degree of confidence, and also to identify locations where addition efforts are required to meet a given acceptable risk of uncertainty. In this work, it is considered that the structural complexity index can be estimated using machine learning methods on raw geo-data. More precisely, the metrics for measuring the complexity can be approximated as the difficulty degree associated to the prediction of the geological objects distribution calculated based on partial information on the actual structural distribution of materials. The proposed methodology is tested on a set of 3D synthetic structural models for which the degree of effort during their building is assessed using various parameters (such as number of faults, number of part in a surface object, number of borders, ...), the rank of geological elements contained in each model, and, finally, their level of deformation (folding and faulting). The results show how the estimated complexity in a 3D model can be approximated by the quantity of partial data necessaries to simulated at a given precision the actual 3D model without error using machine learning algorithms.

  13. On the evaluation of photogrammetric methods for dense 3D surface reconstruction in a metrological context

    NASA Astrophysics Data System (ADS)

    Toschi, I.; Capra, A.; De Luca, L.; Beraldin, J.-A.; Cournoyer, L.

    2014-05-01

    This paper discusses a methodology to evaluate the accuracy of recently developed image-based 3D modelling techniques. So far, the emergence of these novel methods has not been supported by the definition of an internationally recognized standard which is fundamental for user confidence and market growth. In order to provide an element of reflection and solution to the different communities involved in 3D imaging, a promising approach is presented in this paper for the assessment of both metric quality and limitations of an open-source suite of tools (Apero/MicMac), developed for the extraction of dense 3D point clouds from a set of unordered 2D images. The proposed procedural workflow is performed within a metrological context, through inter-comparisons with "reference" data acquired with two hemispherical laser scanners, one total station, and one laser tracker. The methodology is applied to two case studies, designed in order to analyse the software performances in dealing with both outdoor and environmentally controlled conditions, i.e. the main entrance of Cathédrale de la Major (Marseille, France) and a custom-made scene located at National Research Council of Canada 3D imaging Metrology Laboratory (Ottawa). Comparative data and accuracy evidence produced for both tests allow the study of some key factors affecting 3D model accuracy.

  14. A fast and accurate method to predict 2D and 3D aerodynamic boundary layer flows

    NASA Astrophysics Data System (ADS)

    Bijleveld, H. A.; Veldman, A. E. P.

    2014-12-01

    A quasi-simultaneous interaction method is applied to predict 2D and 3D aerodynamic flows. This method is suitable for offshore wind turbine design software as it is a very accurate and computationally reasonably cheap method. This study shows the results for a NACA 0012 airfoil. The two applied solvers converge to the experimental values when the grid is refined. We also show that in separation the eigenvalues remain positive thus avoiding the Goldstein singularity at separation. In 3D we show a flow over a dent in which separation occurs. A rotating flat plat is used to show the applicability of the method for rotating flows. The shown capabilities of the method indicate that the quasi-simultaneous interaction method is suitable for design methods for offshore wind turbine blades.

  15. 2D/3D registration with the CMA-ES method

    NASA Astrophysics Data System (ADS)

    Gong, Ren Hui; Abolmaesumi, Purang

    2008-03-01

    In this paper, we propose a new method for 2D/3D registration and report its experimental results. The method employs the Covariance Matrix Adaptation Evolution Strategy (CMA-ES) algorithm to search for an optimal transformation that aligns the 2D and 3D data. The similarity calculation is based on Digitally Reconstructed Radiographs (DRRs), which are dynamically generated from the 3D data using a hardware-accelerated technique - Adaptive Slice Geometry Texture Mapping (ASGTM). Three bone phantoms of different sizes and shapes were used to test our method: a long femur, a large pelvis, and a small scaphoid. A collection of experiments were performed to register CT to fluoroscope and DRRs of these phantoms using the proposed method and two prior work, i.e. our previously proposed Unscented Kalman Filter (UKF) based method and a commonly used simplex-based method. The experimental results showed that: 1) with slightly more computation overhead, the proposed method was significantly more robust to local minima than the simplex-based method; 2) while as robust as the UKF-based method in terms of capture range, the new method was not sensitive to the initial values of its exposed control parameters, and has also no special requirement about the cost function; 3) the proposed method was fast and consistently achieved the best accuracies in all compared methods.

  16. Mixed-Mode Fracture and Fatigue Analysis of Cracked 3D Complex Structures using a 3D SGBEM-FEM Alternating Method

    NASA Astrophysics Data System (ADS)

    Bhavanam, Sharada

    The aim of this thesis is to numerically evaluate the mixed-mode Stress Intensity Factors (SIFs) of complex 3D structural geometries with arbitrary 3D cracks using the Symmetric Galerkin Boundary Element Method-Finite Element Method (SGBEM-FEM) Alternating Method. Various structural geometries with different loading scenarios and crack configurations were examined in this thesis to understand the behavior and trends of the mixed-mode SIFs as well as the fatigue life for these complex structural geometries. Although some 3D structures have empirical and numerical solutions that are readily available in the open literature, some do not; therefore this thesis presents the results of fracture and fatigue analyses of these 3D complex structures using the SGBEM-FEM Alternating Method to serve as reference for future studies. Furthermore, there are advantages of using the SGBEM-FEM Alternating Method compared to traditional FEM methods. For example, the fatigue-crack-growth and fatigue life can be better estimated for a structure because different fatigue models (i.e. Walker, Paris, and NASGRO) can be used within the same framework of the SGBEM-FEM Alternating Method. The FEM (un-cracked structure)/BEM(crack model) meshes are modeled independently, which speeds up the computation process and reduces the cost of human labor. A simple coarse mesh can be used for all fracture and fatigue analyses of complex structures. In this thesis, simple coarse meshes were used for 3D complex structures, which were below 5000 elements as compared to traditional FEM, which require meshes where the elements range on the order of ˜250,000 to ˜106 and sometimes even more than that.

  17. An efficient 3D R-tree spatial index method for virtual geographic environments

    NASA Astrophysics Data System (ADS)

    Zhu, Qing; Gong, Jun; Zhang, Yeting

    A three-dimensional (3D) spatial index is required for real time applications of integrated organization and management in virtual geographic environments of above ground, underground, indoor and outdoor objects. Being one of the most promising methods, the R-tree spatial index has been paid increasing attention in 3D geospatial database management. Since the existing R-tree methods are usually limited by their weakness of low efficiency, due to the critical overlap of sibling nodes and the uneven size of nodes, this paper introduces the k-means clustering method and employs the 3D overlap volume, 3D coverage volume and the minimum bounding box shape value of nodes as the integrative grouping criteria. A new spatial cluster grouping algorithm and R-tree insertion algorithm is then proposed. Experimental analysis on comparative performance of spatial indexing shows that by the new method the overlap of R-tree sibling nodes is minimized drastically and a balance in the volumes of the nodes is maintained.

  18. 2D and 3D Method of Characteristic Tools for Complex Nozzle Development

    NASA Technical Reports Server (NTRS)

    Rice, Tharen

    2003-01-01

    This report details the development of a 2D and 3D Method of Characteristic (MOC) tool for the design of complex nozzle geometries. These tools are GUI driven and can be run on most Windows-based platforms. The report provides a user's manual for these tools as well as explains the mathematical algorithms used in the MOC solutions.

  19. A fast and low-loss 3-D magnetotelluric inversion method with parallel structure

    NASA Astrophysics Data System (ADS)

    Zhang, K.; Zhang, L.

    2013-12-01

    The 2D assumption is valid in some cases of interpretation, the approximation does not work in most cases, especially in areas with complex geo-electrical structure. A number of 3D magentotelluric inversion methods has been proposed, including RRI, CG, QA, NLCG. Each of those methods has its own advantages and disadvantages. However, as the 3D dataset and mesh grid require greater computer memory and calculation time than 2D methods, the efficiency of the inversion scheme become a key concern of 3D inversions. We chose NLCG as the optimization method for inversion. A parameter matrix related with the current resisitivity model and data error is proposed to approximate the Hessian matrix. So four forward calculation can be avoided each iteration. In addition, OPENMP parallel API is utilized to establish an effecient parallel inversion structure based on frequency to reduce computation time. And both synthetic and field data are used to test the efficiency of the inversion and the preconditioning method. The model consists of four square prisms residing in a halfspace. The total computation time of invertion is 706s (use one PC). Fiugre 1 shows the inversion result. The abnormal bodies can be distinguished clearly. Field data from the NIHE dataset in China is used to verify the reliability and efficiency of the 3D inversion method. The total computation time is about 25 minutes after 60 iterations on one PC. Totally, four electrical layers can be corresponded to the four stratum in 3D AMT inversion model, and the faults can be seen clearly. In addition, we can get more information about fault and alteration interface from constrained inversion result. Finally, the inversion method is very fast and low-loss, so it can be used in modern PC (need only one PC) with few hardware constraints. (a): initial model; (b): inversion depth slices (1-4km); (c): fitting error (a): AMT 3D slice; (b): CSAMT 2D model; (c): TEM 1D model; (d): SIP 2D model; (e) AMT 3D constrained

  20. Efficient calculation method for realistic deep 3D scene hologram using orthographic projection

    NASA Astrophysics Data System (ADS)

    Igarashi, Shunsuke; Nakamura, Tomoya; Matsushima, Kyoji; Yamaguchi, Masahiro

    2016-03-01

    We propose a fast calculation method to synthesize a computer-generated hologram (CGH) of realistic deep three-dimensional (3D) scene. In our previous study, we have proposed a calculation method of CGH for reproducing such scene called ray-sampling-plane (RSP) method, in which light-ray information of a scene is converted to wavefront, and the wavefront is numerically propagated based on diffraction theory. In this paper, we introduce orthographic projection to the RSP method for accelerating calculation time. By numerical experiments, we verified the accelerated calculation with the ratio of 28-times compared to the conventional RSP method. The calculated CGH was fabricated by the printing system using laser lithography and demonstrated deep 3D image reconstruction in 52mm×52mm with realistic appearance effect such as gloss and translucent effect.

  1. Importance of a 3D forward modeling tool for surface wave analysis methods

    NASA Astrophysics Data System (ADS)

    Pageot, Damien; Le Feuvre, Mathieu; Donatienne, Leparoux; Philippe, Côte; Yann, Capdeville

    2016-04-01

    Since a few years, seismic surface waves analysis methods (SWM) have been widely developed and tested in the context of subsurface characterization and have demonstrated their effectiveness for sounding and monitoring purposes, e.g., high-resolution tomography of the principal geological units of California or real time monitoring of the Piton de la Fournaise volcano. Historically, these methods are mostly developed under the assumption of semi-infinite 1D layered medium without topography. The forward modeling is generally based on Thomson-Haskell matrix based modeling algorithm and the inversion is driven by Monte-Carlo sampling. Given their efficiency, SWM have been transfered to several scale of which civil engineering structures in order to, e.g., determine the so-called V s30 parameter or assess other critical constructional parameters in pavement engineering. However, at this scale, many structures may often exhibit 3D surface variations which drastically limit the efficiency of SWM application. Indeed, even in the case of an homogeneous structure, 3D geometry can bias the dispersion diagram of Rayleigh waves up to obtain discontinuous phase velocity curves which drastically impact the 1D mean velocity model obtained from dispersion inversion. Taking advantages of high-performance computing center accessibility and wave propagation modeling algorithm development, it is now possible to consider the use of a 3D elastic forward modeling algorithm instead of Thomson-Haskell method in the SWM inversion process. We use a parallelized 3D elastic modeling code based on the spectral element method which allows to obtain accurate synthetic data with very low numerical dispersion and a reasonable numerical cost. In this study, we choose dike embankments as an illustrative example. We first show that their longitudinal geometry may have a significant effect on dispersion diagrams of Rayleigh waves. Then, we demonstrate the necessity of 3D elastic modeling as a forward

  2. A new 3D tracking method exploiting the capabilities of digital holography in microscopy

    NASA Astrophysics Data System (ADS)

    Miccio, L.; Memmolo, P.; Merola, F.; Fusco, S.; Embrione, V.; Netti, P. A.; Ferraro, P.

    2013-04-01

    A method for 3D tracking has been developed exploiting Digital Holographic Microscopy (DHM) features. In the framework of self-consistent platform for manipulation and measurement of biological specimen we use DHM for quantitative and completely label free analysis of specimen with low amplitude contrast. Tracking capability extend the potentiality of DHM allowing to monitor the motion of appropriate probes and correlate it with sample properties. Complete 3D tracking has been obtained for the probes avoiding the issue of amplitude refocusing in traditional tracking processing. Our technique belongs to the video tracking methods that, conversely from Quadrant Photo-Diode method, opens the possibility to track multiples probes. All the common used video tracking algorithms are based on the numerical analysis of amplitude images in the focus plane and the shift of the maxima in the image plane are measured after the application of an appropriate threshold. Our approach for video tracking uses different theoretical basis. A set of interferograms is recorded and the complex wavefields are managed numerically to obtain three dimensional displacements of the probes. The procedure works properly on an higher number of probes and independently from their size. This method overcomes the traditional video tracking issues as the inability to measure the axial movement and the choice of suitable threshold mask. The novel configuration allows 3D tracking of micro-particles and simultaneously can furnish Quantitative Phase-contrast maps of tracked micro-objects by interference microscopy, without changing the configuration. In this paper, we show a new concept for a compact interferometric microscope that can ensure the multifunctionality, accomplishing accurate 3D tracking and quantitative phase-contrast analysis. Experimental results are presented and discussed for in vitro cells. Through a very simple and compact optical arrangement we show how two different functionalities

  3. MTF characterization in 2D and 3D for a high resolution, large field of view flat panel imager for cone beam CT

    NASA Astrophysics Data System (ADS)

    Shah, Jainil; Mann, Steve D.; Tornai, Martin P.; Richmond, Michelle; Zentai, George

    2014-03-01

    The 2D and 3D modulation transfer functions (MTFs) of a custom made, large 40x30cm2 area, 600- micron CsI-TFT based flat panel imager having 127-micron pixellation, along with the micro-fiber scintillator structure, were characterized in detail using various techniques. The larger area detector yields a reconstructed FOV of 25cm diameter with an 80cm SID in CT mode. The MTFs were determined with 1x1 (intrinsic) binning. The 2D MTFs were determined using a 50.8 micron tungsten wire and a solid lead edge, and the 3D MTF was measured using a custom made phantom consisting of three nearly orthogonal 50.8 micron tungsten wires suspended in an acrylic cubic frame. The 2D projection data was reconstructed using an iterative OSC algorithm using 16 subsets and 5 iterations. As additional verification of the resolution, along with scatter, the Catphan® phantom was also imaged and reconstructed with identical parameters. The measured 2D MTF was ~4% using the wire technique and ~1% using the edge technique at the 3.94 lp/mm Nyquist cut-off frequency. The average 3D MTF measured along the wires was ~8% at the Nyquist. At 50% MTF, the resolutions were 1.2 and 2.1 lp/mm in 2D and 3D, respectively. In the Catphan® phantom, the 1.7 lp/mm bars were easily observed. Lastly, the 3D MTF measured on the three wires has an observed 5.9% RMSD, indicating that the resolution of the imaging system is uniform and spatially independent. This high performance detector is integrated into a dedicated breast SPECT-CT imaging system.

  4. Image selection in photogrammetric multi-view stereo methods for metric and complete 3D reconstruction

    NASA Astrophysics Data System (ADS)

    Hosseininaveh Ahmadabadian, Ali; Robson, Stuart; Boehm, Jan; Shortis, Mark

    2013-04-01

    Multi-View Stereo (MVS) as a low cost technique for precise 3D reconstruction can be a rival for laser scanners if the scale of the model is resolved. A fusion of stereo imaging equipment with photogrammetric bundle adjustment and MVS methods, known as photogrammetric MVS, can generate correctly scaled 3D models without using any known object distances. Although a huge number of stereo images (e.g. 200 high resolution images from a small object) captured of the object contains redundant data that allows detailed and accurate 3D reconstruction, the capture and processing time is increased when a vast amount of high resolution images are employed. Moreover, some parts of the object are often missing due to the lack of coverage of all areas. These problems demand a logical selection of the most suitable stereo camera views from the large image dataset. This paper presents a method for clustering and choosing optimal stereo or optionally single images from a large image dataset. The approach focusses on the two key steps of image clustering and iterative image selection. The method is developed within a software application called Imaging Network Designer (IND) and tested by the 3D recording of a gearbox and three metric reference objects. A comparison is made between IND and CMVS, which is a free package for selecting vantage images. The final 3D models obtained from the IND and CMVS approaches are compared with datasets generated with an MMDx Nikon Laser scanner. Results demonstrate that IND can provide a better image selection for MVS than CMVS in terms of surface coordinate uncertainty and completeness.

  5. Combination of photogrammetric and geoelectric methods to assess 3d structures associated to natural hazards

    NASA Astrophysics Data System (ADS)

    Fargier, Yannick; Dore, Ludovic; Antoine, Raphael; Palma Lopes, Sérgio; Fauchard, Cyrille

    2016-04-01

    The extraction of subsurface materials is a key element for the economy of a nation. However, natural degradation of underground quarries is a major issue from an economic and public safety point of view. Consequently, the quarries stakeholders require relevant tools to define hazards associated to these structures. Safety assessment methods of underground quarries are recent and mainly based on rock physical properties. This kind of method leads to a certain homogeneity assumption of pillar internal properties that can cause an underestimation of the risk. Electrical Resistivity Imaging (ERI) is a widely used method that possesses two advantages to overcome this limitation. The first is to provide a qualitative understanding for the detection and monitoring of anomalies in the pillar body (e.g. faults). The second is to provide a quantitative description of the electrical resistivity distribution inside the pillar. This quantitative description can be interpreted with constitutive laws to help decision support (water content decreases the mechanical resistance of a chalk). However, conventional 2D and 3D Imaging techniques are usually applied to flat surface surveys or to surfaces with moderate topography. A 3D inversion of more complex media (case of the pillar) requires a full consideration of the geometry that was never taken into account before. The Photogrammetric technique presents a cost effective solution to obtain an accurate description of the external geometry of a complex media. However, this method has never been fully coupled with a geophysical method to enhance/improve the inversion process. Consequently we developed a complete procedure showing that photogrammetric and ERI tools can be efficiently combined to assess a complex 3D structure. This procedure includes in a first part a photogrammetric survey, a processing stage with an open source software and a post-processing stage finalizing a 3D surface model. The second part necessitates the

  6. 3D ultrasound imaging method to assess the true spinal deformity.

    PubMed

    Vo, Quang N; Lou, Edmond H M; Le, Lawrence H

    2015-08-01

    Spinal deformity is a three-dimensional (3D) spinal disorder with a lateral deviation and coupled with axial vertebral rotation (AVR). The current clinical practice only measures its severity on postero-anterior (PA) radiographs, which may underestimate the deformity. The actual severity should be obtained on the plane of maximal curvature (PMC), which requires a 3D spinal image. There are many approaches to reconstruct 3D spinal images; however, ultrasound is one of the promising techniques with its non-ionizing characteristic. This study proposed an image processing method using the voxel-based bilinear interpolation to reconstruct a 3D spinal image from ultrasound data, from which the AVR was measured and the spinal curvature on the PMC was determined. In-vitro and in-vivo experiments were performed to determine the accuracy of the measurements from the ultrasound method. The results showed that the 3D ultrasound spinal image could be reconstructed. The curvature angle on the PA and the PMC planes could also be determined. The tilt angle of each individual vertebra in in-vitro study showed high accuracy and correlation (MAD <; 0.9° ± 0.2° and r(2) > 0.87) when comparing the measurements from CT with ultrasound. In in-vivo study, the curvature angles measured on the PA radiographs and ultrasound images yielded a small difference (MAD 3.4° ± 1.0°) and a strong correlation (r(2) = 0.63) within a clinical accepted error of 5°. PMID:26736565

  7. Intrathoracic tumour motion estimation from CT imaging using the 3D optical flow method

    NASA Astrophysics Data System (ADS)

    Guerrero, Thomas; Zhang, Geoffrey; Huang, Tzung-Chi; Lin, Kang-Ping

    2004-09-01

    The purpose of this work was to develop and validate an automated method for intrathoracic tumour motion estimation from breath-hold computed tomography (BH CT) imaging using the three-dimensional optical flow method (3D OFM). A modified 3D OFM algorithm provided 3D displacement vectors for each voxel which were used to map tumour voxels on expiration BH CT onto inspiration BH CT images. A thoracic phantom and simulated expiration/inspiration BH CT pairs were used for validation. The 3D OFM was applied to the measured inspiration and expiration BH CT images from one lung cancer and one oesophageal cancer patient. The resulting displacements were plotted in histogram format and analysed to provide insight regarding the tumour motion. The phantom tumour displacement was measured as 1.20 and 2.40 cm with full-width at tenth maximum (FWTM) for the distribution of displacement estimates of 0.008 and 0.006 cm, respectively. The maximum error of any single voxel's motion estimate was 1.1 mm along the z-dimension or approximately one-third of the z-dimension voxel size. The simulated BH CT pairs revealed an rms error of less than 0.25 mm. The displacement of the oesophageal tumours was nonuniform and up to 1.4 cm, this was a new finding. A lung tumour maximum displacement of 2.4 cm was found in the case evaluated. In conclusion, 3D OFM provided an accurate estimation of intrathoracic tumour motion, with estimated errors less than the voxel dimension in a simulated motion phantom study. Surprisingly, oesophageal tumour motion was large and nonuniform, with greatest motion occurring at the gastro-oesophageal junction. Presented at The IASTED Second International Conference on Biomedical Engineering (BioMED 2004), Innsbruck, Austria, 16-18 February 2004.

  8. Finite volume and finite element methods applied to 3D laminar and turbulent channel flows

    SciTech Connect

    Louda, Petr; Příhoda, Jaromír; Sváček, Petr; Kozel, Karel

    2014-12-10

    The work deals with numerical simulations of incompressible flow in channels with rectangular cross section. The rectangular cross section itself leads to development of various secondary flow patterns, where accuracy of simulation is influenced by numerical viscosity of the scheme and by turbulence modeling. In this work some developments of stabilized finite element method are presented. Its results are compared with those of an implicit finite volume method also described, in laminar and turbulent flows. It is shown that numerical viscosity can cause errors of same magnitude as different turbulence models. The finite volume method is also applied to 3D turbulent flow around backward facing step and good agreement with 3D experimental results is obtained.

  9. A fast method to measure the 3D surface of the human heart

    NASA Astrophysics Data System (ADS)

    Cao, Yiping; Su, Xianyu; Xiang, Liqun; Chen, Wenjing; Zhang, Qican

    2003-12-01

    Three-dimensional (3-D) automatic measurement of an object is widely used in many fields. In Biology and Medicine society, it can be applicable for surgery, orthopedics, viscera disease analysis and diagnosis etc. Here a new fast method to measure the 3D surface of human heart is proposed which can provide doctors a lot of information, such as the size of heart profile, the sizes of the left or right heart ventricle, and the curvature center and radius of heart ventricle, to fully analyze and diagnose pathobiology of human heart. The new fast method is optically and noncontacted and based upon the Phase Measurement Profilometry (PMP), which has higher measuring precision. A human heart specimen experiment has verified our method.

  10. Standardization based on human factors for 3D display: performance characteristics and measurement methods

    NASA Astrophysics Data System (ADS)

    Uehara, Shin-ichi; Ujike, Hiroyasu; Hamagishi, Goro; Taira, Kazuki; Koike, Takafumi; Kato, Chiaki; Nomura, Toshio; Horikoshi, Tsutomu; Mashitani, Ken; Yuuki, Akimasa; Izumi, Kuniaki; Hisatake, Yuzo; Watanabe, Naoko; Umezu, Naoaki; Nakano, Yoshihiko

    2010-02-01

    We are engaged in international standardization activities for 3D displays. We consider that for a sound development of 3D displays' market, the standards should be based on not only mechanism of 3D displays, but also human factors for stereopsis. However, we think that there is no common understanding on what the 3D display should be and that the situation makes developing the standards difficult. In this paper, to understand the mechanism and human factors, we focus on a double image, which occurs in some conditions on an autostereoscopic display. Although the double image is generally considered as an unwanted effect, we consider that whether the double image is unwanted or not depends on the situation and that there are some allowable double images. We tried to classify the double images into the unwanted and the allowable in terms of the display mechanism and visual ergonomics for stereopsis. The issues associated with the double image are closely related to performance characteristics for the autostereoscopic display. We also propose performance characteristics, measurement and analysis methods to represent interocular crosstalk and motion parallax.

  11. A novel method for the 3-D reconstruction of scoliotic ribs from frontal and lateral radiographs.

    PubMed

    Seoud, Lama; Cheriet, Farida; Labelle, Hubert; Dansereau, Jean

    2011-05-01

    Among the external manifestations of scoliosis, the rib hump, which is associated with the ribs' deformities and rotations, constitutes the most disturbing aspect of the scoliotic deformity for patients. A personalized 3-D model of the rib cage is important for a better evaluation of the deformity, and hence, a better treatment planning. A novel method for the 3-D reconstruction of the rib cage, based only on two standard radiographs, is proposed in this paper. For each rib, two points are extrapolated from the reconstructed spine, and three points are reconstructed by stereo radiography. The reconstruction is then refined using a surface approximation. The method was evaluated using clinical data of 13 patients with scoliosis. A comparison was conducted between the reconstructions obtained with the proposed method and those obtained by using a previous reconstruction method based on two frontal radiographs. A first comparison criterion was the distances between the reconstructed ribs and the surface topography of the trunk, considered as the reference modality. The correlation between ribs axial rotation and back surface rotation was also evaluated. The proposed method successfully reconstructed the ribs of the 6th-12th thoracic levels. The evaluation results showed that the 3-D configuration of the new rib reconstructions is more consistent with the surface topography and provides more accurate measurements of ribs axial rotation.

  12. Earthquake source tensor inversion with the gCAP method and 3D Green's functions

    NASA Astrophysics Data System (ADS)

    Zheng, J.; Ben-Zion, Y.; Zhu, L.; Ross, Z.

    2013-12-01

    We develop and apply a method to invert earthquake seismograms for source properties using a general tensor representation and 3D Green's functions. The method employs (i) a general representation of earthquake potency/moment tensors with double couple (DC), compensated linear vector dipole (CLVD), and isotropic (ISO) components, and (ii) a corresponding generalized CAP (gCap) scheme where the continuous wave trains are broken into Pnl and surface waves (Zhu & Ben-Zion, 2013). For comparison, we also use the waveform inversion method of Zheng & Chen (2012) and Ammon et al. (1998). Sets of 3D Green's functions are calculated on a grid of 1 km3 using the 3-D community velocity model CVM-4 (Kohler et al. 2003). A bootstrap technique is adopted to establish robustness of the inversion results using the gCap method (Ross & Ben-Zion, 2013). Synthetic tests with 1-D and 3-D waveform calculations show that the source tensor inversion procedure is reasonably reliable and robust. As initial application, the method is used to investigate source properties of the March 11, 2013, Mw=4.7 earthquake on the San Jacinto fault using recordings of ~45 stations up to ~0.2Hz. Both the best fitting and most probable solutions include ISO component of ~1% and CLVD component of ~0%. The obtained ISO component, while small, is found to be a non-negligible positive value that can have significant implications for the physics of the failure process. Work on using higher frequency data for this and other earthquakes is in progress.

  13. A Quality Assurance Method that Utilizes 3D Dosimetry and Facilitates Clinical Interpretation

    SciTech Connect

    Oldham, Mark; Thomas, Andrew; O'Daniel, Jennifer; Juang, Titania; Ibbott, Geoffrey; Adamovics, John; Kirkpatrick, John P.

    2012-10-01

    Purpose: To demonstrate a new three-dimensional (3D) quality assurance (QA) method that provides comprehensive dosimetry verification and facilitates evaluation of the clinical significance of QA data acquired in a phantom. Also to apply the method to investigate the dosimetric efficacy of base-of-skull (BOS) intensity-modulated radiotherapy (IMRT) treatment. Methods and Materials: Two types of IMRT QA verification plans were created for 6 patients who received BOS IMRT. The first plan enabled conventional 2D planar IMRT QA using the Varian portal dosimetry system. The second plan enabled 3D verification using an anthropomorphic head phantom. In the latter, the 3D dose distribution was measured using the DLOS/Presage dosimetry system (DLOS = Duke Large-field-of-view Optical-CT System, Presage Heuris Pharma, Skillman, NJ), which yielded isotropic 2-mm data throughout the treated volume. In a novel step, measured 3D dose distributions were transformed back to the patient's CT to enable calculation of dose-volume histograms (DVH) and dose overlays. Measured and planned patient DVHs were compared to investigate clinical significance. Results: Close agreement between measured and calculated dose distributions was observed for all 6 cases. For gamma criteria of 3%, 2 mm, the mean passing rate for portal dosimetry was 96.8% (range, 92.0%-98.9%), compared to 94.9% (range, 90.1%-98.9%) for 3D. There was no clear correlation between 2D and 3D passing rates. Planned and measured dose distributions were evaluated on the patient's anatomy, using DVH and dose overlays. Minor deviations were detected, and the clinical significance of these are presented and discussed. Conclusions: Two advantages accrue to the methods presented here. First, treatment accuracy is evaluated throughout the whole treated volume, yielding comprehensive verification. Second, the clinical significance of any deviations can be assessed through the generation of DVH curves and dose overlays on the patient

  14. Enhanced Rgb-D Mapping Method for Detailed 3d Modeling of Large Indoor Environments

    NASA Astrophysics Data System (ADS)

    Tang, Shengjun; Zhu, Qing; Chen, Wu; Darwish, Walid; Wu, Bo; Hu, Han; Chen, Min

    2016-06-01

    RGB-D sensors are novel sensing systems that capture RGB images along with pixel-wise depth information. Although they are widely used in various applications, RGB-D sensors have significant drawbacks with respect to 3D dense mapping of indoor environments. First, they only allow a measurement range with a limited distance (e.g., within 3 m) and a limited field of view. Second, the error of the depth measurement increases with increasing distance to the sensor. In this paper, we propose an enhanced RGB-D mapping method for detailed 3D modeling of large indoor environments by combining RGB image-based modeling and depth-based modeling. The scale ambiguity problem during the pose estimation with RGB image sequences can be resolved by integrating the information from the depth and visual information provided by the proposed system. A robust rigid-transformation recovery method is developed to register the RGB image-based and depth-based 3D models together. The proposed method is examined with two datasets collected in indoor environments for which the experimental results demonstrate the feasibility and robustness of the proposed method

  15. The RNA 3D Motif Atlas: Computational methods for extraction, organization and evaluation of RNA motifs.

    PubMed

    Parlea, Lorena G; Sweeney, Blake A; Hosseini-Asanjan, Maryam; Zirbel, Craig L; Leontis, Neocles B

    2016-07-01

    RNA 3D motifs occupy places in structured RNA molecules that correspond to the hairpin, internal and multi-helix junction "loops" of their secondary structure representations. As many as 40% of the nucleotides of an RNA molecule can belong to these structural elements, which are distinct from the regular double helical regions formed by contiguous AU, GC, and GU Watson-Crick basepairs. With the large number of atomic- or near atomic-resolution 3D structures appearing in a steady stream in the PDB/NDB structure databases, the automated identification, extraction, comparison, clustering and visualization of these structural elements presents an opportunity to enhance RNA science. Three broad applications are: (1) identification of modular, autonomous structural units for RNA nanotechnology, nanobiology and synthetic biology applications; (2) bioinformatic analysis to improve RNA 3D structure prediction from sequence; and (3) creation of searchable databases for exploring the binding specificities, structural flexibility, and dynamics of these RNA elements. In this contribution, we review methods developed for computational extraction of hairpin and internal loop motifs from a non-redundant set of high-quality RNA 3D structures. We provide a statistical summary of the extracted hairpin and internal loop motifs in the most recent version of the RNA 3D Motif Atlas. We also explore the reliability and accuracy of the extraction process by examining its performance in clustering recurrent motifs from homologous ribosomal RNA (rRNA) structures. We conclude with a summary of remaining challenges, especially with regard to extraction of multi-helix junction motifs. PMID:27125735

  16. TRAIL protein localization in human primary T cells by 3D microscopy using 3D interactive surface plot: a new method to visualize plasma membrane.

    PubMed

    Gras, Christophe; Smith, Nikaïa; Sengmanivong, Lucie; Gandini, Mariana; Kubelka, Claire Fernandes; Herbeuval, Jean-Philippe

    2013-01-31

    The apoptotic ligand TNF-related apoptosis ligand (TRAIL) is expressed on the membrane of immune cells during HIV infection. The intracellular stockade of TRAIL in human primary CD4(+) T cells is not known. Here we investigated whether primary CD4(+) T cells expressed TRAIL in their intracellular compartment and whether TRAIL is relocalized on the plasma membrane under HIV activation. We found that TRAIL protein was stocked in intracellular compartment in non activated CD4(+) T cells and that the total level of TRAIL protein was not increased under HIV-1 stimulation. However, TRAIL was massively relocalized on plasma membrane when cells were cultured with HIV. Using three dimensional (3D) microscopy we localized TRAIL protein in human T cells and developed a new method to visualize plasma membrane without the need of a membrane marker. This method used the 3D interactive surface plot and bright light acquired images. PMID:23085529

  17. TRAIL protein localization in human primary T cells by 3D microscopy using 3D interactive surface plot: a new method to visualize plasma membrane.

    PubMed

    Gras, Christophe; Smith, Nikaïa; Sengmanivong, Lucie; Gandini, Mariana; Kubelka, Claire Fernandes; Herbeuval, Jean-Philippe

    2013-01-31

    The apoptotic ligand TNF-related apoptosis ligand (TRAIL) is expressed on the membrane of immune cells during HIV infection. The intracellular stockade of TRAIL in human primary CD4(+) T cells is not known. Here we investigated whether primary CD4(+) T cells expressed TRAIL in their intracellular compartment and whether TRAIL is relocalized on the plasma membrane under HIV activation. We found that TRAIL protein was stocked in intracellular compartment in non activated CD4(+) T cells and that the total level of TRAIL protein was not increased under HIV-1 stimulation. However, TRAIL was massively relocalized on plasma membrane when cells were cultured with HIV. Using three dimensional (3D) microscopy we localized TRAIL protein in human T cells and developed a new method to visualize plasma membrane without the need of a membrane marker. This method used the 3D interactive surface plot and bright light acquired images.

  18. PMARC - PANEL METHOD AMES RESEARCH CENTER

    NASA Technical Reports Server (NTRS)

    Ashby, D. L.

    1994-01-01

    Panel methods are moderate cost tools for solving a wide range of engineering problems. PMARC (Panel Method Ames Research Center) is a potential flow panel code that numerically predicts flow fields around complex three-dimensional geometries. PMARC's predecessor was a panel code named VSAERO which was developed for NASA by Analytical Methods, Inc. PMARC is a new program with many additional subroutines and a well-documented code suitable for powered-lift aerodynamic predictions. The program's open architecture facilitates modifications or additions of new features. Another improvement is the adjustable size code which allows for an optimum match between the computer hardware available to the user and the size of the problem being solved. PMARC can be resized (the maximum number of panels can be changed) in a matter of minutes. Several other state-of-the-art PMARC features include internal flow modeling for ducts and wind tunnel test sections, simple jet plume modeling essential for the analysis and design of powered-lift aircraft, and a time-stepping wake model which allows the study of both steady and unsteady motions. PMARC is a low-order panel method, which means the singularities are distributed with constant strength over each panel. In many cases low-order methods can provide nearly the same accuracy as higher order methods (where the singularities are allowed to vary linearly or quadratically over each panel). Low-order methods have the advantage of a shorter computation time and do not require exact matching between panels. The flow problem is solved by assuming that the body is at rest in a moving flow field. The body is modeled as a closed surface which divides space into two regions -- one region contains the flow field of interest and the other contains a fictitious flow. External flow problems, such as a wing in a uniform stream, have the external region as the flow field of interest and the internal flow as the fictitious flow. This arrangement is

  19. PMARC - PANEL METHOD AMES RESEARCH CENTER

    NASA Technical Reports Server (NTRS)

    Ashby, D. L.

    1994-01-01

    Panel methods are moderate cost tools for solving a wide range of engineering problems. PMARC (Panel Method Ames Research Center) is a potential flow panel code that numerically predicts flow fields around complex three-dimensional geometries. PMARC's predecessor was a panel code named VSAERO which was developed for NASA by Analytical Methods, Inc. PMARC is a new program with many additional subroutines and a well-documented code suitable for powered-lift aerodynamic predictions. The program's open architecture facilitates modifications or additions of new features. Another improvement is the adjustable size code which allows for an optimum match between the computer hardware available to the user and the size of the problem being solved. PMARC can be resized (the maximum number of panels can be changed) in a matter of minutes. Several other state-of-the-art PMARC features include internal flow modeling for ducts and wind tunnel test sections, simple jet plume modeling essential for the analysis and design of powered-lift aircraft, and a time-stepping wake model which allows the study of both steady and unsteady motions. PMARC is a low-order panel method, which means the singularities are distributed with constant strength over each panel. In many cases low-order methods can provide nearly the same accuracy as higher order methods (where the singularities are allowed to vary linearly or quadratically over each panel). Low-order methods have the advantage of a shorter computation time and do not require exact matching between panels. The flow problem is solved by assuming that the body is at rest in a moving flow field. The body is modeled as a closed surface which divides space into two regions -- one region contains the flow field of interest and the other contains a fictitious flow. External flow problems, such as a wing in a uniform stream, have the external region as the flow field of interest and the internal flow as the fictitious flow. This arrangement is

  20. [Method of multi-resolution 3D image registration by mutual information].

    PubMed

    Ren, Haiping; Wu, Wenkai; Yang, Hu; Chen, Shengzu

    2002-12-01

    Maximization of mutual information is a powerful criterion for 3D medical image registration, allowing robust and fully accurate automated rigid registration of multi-modal images in a various applications. In this paper, a method based on normalized mutual information for 3D image registration was presented on the images of CT, MR and PET. Powell's direction set method and Brent's one-dimensional optimization algorithm were used as optimization strategy. A multi-resolution approach is applied to speedup the matching process. For PET images, pre-procession of segmentation was performed to reduce the background artefacts. According to the evaluation by the Vanderbilt University, Sub-voxel accuracy in multi-modality registration had been achieved with this algorithm. PMID:12561358

  1. Generic precise augmented reality guiding system and its calibration method based on 3D virtual model.

    PubMed

    Liu, Miao; Yang, Shourui; Wang, Zhangying; Huang, Shujun; Liu, Yue; Niu, Zhenqi; Zhang, Xiaoxuan; Zhu, Jigui; Zhang, Zonghua

    2016-05-30

    Augmented reality system can be applied to provide precise guidance for various kinds of manual works. The adaptability and guiding accuracy of such systems are decided by the computational model and the corresponding calibration method. In this paper, a novel type of augmented reality guiding system and the corresponding designing scheme are proposed. Guided by external positioning equipment, the proposed system can achieve high relative indication accuracy in a large working space. Meanwhile, the proposed system is realized with a digital projector and the general back projection model is derived with geometry relationship between digitized 3D model and the projector in free space. The corresponding calibration method is also designed for the proposed system to obtain the parameters of projector. To validate the proposed back projection model, the coordinate data collected by a 3D positioning equipment is used to calculate and optimize the extrinsic parameters. The final projecting indication accuracy of the system is verified with subpixel pattern projecting technique.

  2. Three dimensional template matching segmentation method for motile cells in 3D+t video sequences.

    PubMed

    Pimentel, J A; Corkidi, G

    2010-01-01

    In this work, we describe a segmentation cell method oriented to deal with experimental data obtained from 3D+t microscopical volumes. The proposed segmentation technique takes advantage of the pattern of appearances exhibited by the objects (cells) from different focal planes, as a result of the object translucent properties and its interaction with light. This information allows us to discriminate between cells and artifacts (dust an other) with equivalent size and shape that are present in the biological preparation. Using a simple correlation criteria, the method matches a 3D video template (extracted from a sample of cells) with the motile cells contained into the biological sample, obtaining a high rate of true positives while discarding artifacts. In this work, our analysis is focused on sea urchin spermatozoa cells but is applicable to many other microscopical structures having the same optical properties. PMID:21096252

  3. A novel 3D constellation-masked method for physical security in hierarchical OFDMA system.

    PubMed

    Zhang, Lijia; Liu, Bo; Xin, Xiangjun; Liu, Deming

    2013-07-01

    This paper proposes a novel 3D constellation-masked method to ensure the physical security in hierarchical optical orthogonal frequency division multiplexing access (OFDMA) system. The 3D constellation masking is executed on the two levels of hierarchical modulation and among different OFDM subcarriers, which is realized by the masking vectors. The Lorenz chaotic model is adopted for the generation of masking vectors in the proposed scheme. A 9.85 Gb/s encrypted hierarchical QAM OFDM signal is successfully demonstrated in the experiment. The performance of illegal optical network unit (ONU) with different masking vectors is also investigated. The proposed method is demonstrated to be secure and efficient against the commonly known attacks in the experiment.

  4. Optoranger: A 3D pattern matching method for bin picking applications

    NASA Astrophysics Data System (ADS)

    Sansoni, Giovanna; Bellandi, Paolo; Leoni, Fabio; Docchio, Franco

    2014-03-01

    This paper presents a new method, based on 3D vision, for the recognition of free-form objects in the presence of clutters and occlusions, ideal for robotic bin picking tasks. The method can be considered as a compromise between complexity and effectiveness. A 3D point cloud representing the scene is generated by a triangulation-based scanning system, where a fast camera acquires a blade projected by a laser source. Image segmentation is based on 2D images, and on the estimation of the distances between point pairs, to search for empty areas. Object recognition is performed using commercial software libraries integrated with custom-developed segmentation algorithms, and a database of model clouds created by means of the same scanning system.

  5. Methods for Measuring the Orientation and Rotation Rate of 3D-printed Particles in Turbulence.

    PubMed

    Cole, Brendan C; Marcus, Guy G; Parsa, Shima; Kramel, Stefan; Ni, Rui; Voth, Greg A

    2016-01-01

    Experimental methods are presented for measuring the rotational and translational motion of anisotropic particles in turbulent fluid flows. 3D printing technology is used to fabricate particles with slender arms connected at a common center. Shapes explored are crosses (two perpendicular rods), jacks (three perpendicular rods), triads (three rods in triangular planar symmetry), and tetrads (four arms in tetrahedral symmetry). Methods for producing on the order of 10,000 fluorescently dyed particles are described. Time-resolved measurements of their orientation and solid-body rotation rate are obtained from four synchronized videos of their motion in a turbulent flow between oscillating grids with Rλ = 91. In this relatively low-Reynolds number flow, the advected particles are small enough that they approximate ellipsoidal tracer particles. We present results of time-resolved 3D trajectories of position and orientation of the particles as well as measurements of their rotation rates. PMID:27404898

  6. Comparison of parabolic filtration methods for 3D filtered back projection in pulsed EPR imaging.

    PubMed

    Qiao, Zhiwei; Redler, Gage; Epel, Boris; Halpern, Howard J

    2014-11-01

    Pulse electron paramagnetic resonance imaging (Pulse EPRI) is a robust method for noninvasively measuring local oxygen concentrations in vivo. For 3D tomographic EPRI, the most commonly used reconstruction algorithm is filtered back projection (FBP), in which the parabolic filtration process strongly influences image quality. In this work, we designed and compared 7 parabolic filtration methods to reconstruct both simulated and real phantoms. To evaluate these methods, we designed 3 error criteria and 1 spatial resolution criterion. It was determined that the 2 point derivative filtration method and the two-ramp-filter method have unavoidable negative effects resulting in diminished spatial resolution and increased artifacts respectively. For the noiseless phantom the rectangular-window parabolic filtration method and sinc-window parabolic filtration method were found to be optimal, providing high spatial resolution and small errors. In the presence of noise, the 3 point derivative method and Hamming-window parabolic filtration method resulted in the best compromise between low image noise and high spatial resolution. The 3 point derivative method is faster than Hamming-window parabolic filtration method, so we conclude that the 3 point derivative method is optimal for 3D FBP.

  7. CONTINUOUS-ENERGY MONTE CARLO METHODS FOR CALCULATING GENERALIZED RESPONSE SENSITIVITIES USING TSUNAMI-3D

    SciTech Connect

    Perfetti, Christopher M; Rearden, Bradley T

    2014-01-01

    This work introduces a new approach for calculating sensitivity coefficients for generalized neutronic responses to nuclear data uncertainties using continuous-energy Monte Carlo methods. The approach presented in this paper, known as the GEAR-MC method, allows for the calculation of generalized sensitivity coefficients for multiple responses in a single Monte Carlo calculation with no nuclear data perturbations or knowledge of nuclear covariance data. The theory behind the GEAR-MC method is presented here, and proof of principle is demonstrated by using the GEAR-MC method to calculate sensitivity coefficients for responses in several 3D, continuous-energy Monte Carlo applications.

  8. A model-based reconstruction method for 3-D rotational coronary angiography

    PubMed Central

    Xie, Lizhe; Hu, Yining; Nunes, Jean-Claude; Bellanger, Jean-Jacques; Bedossa, Marc; Luo, Limin; Toumoulin, Christine

    2010-01-01

    This paper presents a model-based reconstruction method of the coronary tree from a few number of projections in rotational angiography imaging. The reconstruction relies on projections acquired at a same cardiac phase and an energy function minimization that aims to lead the deformation of the 3D model to fit projection data whereas preserving coherence both in time and space. Some preliminary results are provided on simulated rotational angiograms. PMID:21096600

  9. Updated Panel-Method Computer Program

    NASA Technical Reports Server (NTRS)

    Ashby, Dale L.

    1995-01-01

    Panel code PMARC_12 (Panel Method Ames Research Center, version 12) computes potential-flow fields around complex three-dimensional bodies such as complete aircraft models. Contains several advanced features, including internal mathematical modeling of flow, time-stepping wake model for simulating either steady or unsteady motions, capability for Trefftz computation of drag induced by plane, and capability for computation of off-body and on-body streamlines, and capability of computation of boundary-layer parameters by use of two-dimensional integral boundary-layer method along surface streamlines. Investigators interested in visual representations of phenomena, may want to consider obtaining program GVS (ARC-13361), General visualization System. GVS is Silicon Graphics IRIS program created to support scientific-visualization needs of PMARC_12. GVS available separately from COSMIC. PMARC_12 written in standard FORTRAN 77, with exception of NAMELIST extension used for input.

  10. A harmonic polynomial cell (HPC) method for 3D Laplace equation with application in marine hydrodynamics

    SciTech Connect

    Shao, Yan-Lin Faltinsen, Odd M.

    2014-10-01

    We propose a new efficient and accurate numerical method based on harmonic polynomials to solve boundary value problems governed by 3D Laplace equation. The computational domain is discretized by overlapping cells. Within each cell, the velocity potential is represented by the linear superposition of a complete set of harmonic polynomials, which are the elementary solutions of Laplace equation. By its definition, the method is named as Harmonic Polynomial Cell (HPC) method. The characteristics of the accuracy and efficiency of the HPC method are demonstrated by studying analytical cases. Comparisons will be made with some other existing boundary element based methods, e.g. Quadratic Boundary Element Method (QBEM) and the Fast Multipole Accelerated QBEM (FMA-QBEM) and a fourth order Finite Difference Method (FDM). To demonstrate the applications of the method, it is applied to some studies relevant for marine hydrodynamics. Sloshing in 3D rectangular tanks, a fully-nonlinear numerical wave tank, fully-nonlinear wave focusing on a semi-circular shoal, and the nonlinear wave diffraction of a bottom-mounted cylinder in regular waves are studied. The comparisons with the experimental results and other numerical results are all in satisfactory agreement, indicating that the present HPC method is a promising method in solving potential-flow problems. The underlying procedure of the HPC method could also be useful in other fields than marine hydrodynamics involved with solving Laplace equation.

  11. A variable flip angle-based method for reducing blurring in 3D GRASE ASL

    NASA Astrophysics Data System (ADS)

    Liang, Xiaoyun; Connelly, Alan; Tournier, Jacques-Donald; Calamante, Fernando

    2014-09-01

    Arterial Spin Labeling (ASL) is an MRI technique to measure cerebral blood flow directly and noninvasively, and thus provides a more direct quantitative correlate of neural activity than blood-oxygen-level-dependent fMRI. A 3D gradient and spin-echo (GRASE) sequence is capable of enhancing signal-to-noise ratio, and has been shown to be a very useful readout module for ASL sequences. Nonetheless, the introduction of significant blurring in its single-shot version, due to T2 decay along the partition dimension, compromises the achievable spatial resolution, limiting the potential of this technique for whole-brain coverage. To address this issue, a method for reducing blurring based on a variable flip angle (VFA) scheme is proposed in this study for 3D GRASE ASL perfusion. Numerical simulations show that the proposed method is capable of reducing the blurring significantly compared to the standard constant flip angle approach; this result was further confirmed using in vivo data. The proposed VFA method should therefore be of significance to 3D GRASE ASL fMRI studies, since it is able to reduce blurring without sacrificing temporal resolution.

  12. A new combined prior based reconstruction method for compressed sensing in 3D ultrasound imaging

    NASA Astrophysics Data System (ADS)

    Uddin, Muhammad S.; Islam, Rafiqul; Tahtali, Murat; Lambert, Andrew J.; Pickering, Mark R.

    2015-03-01

    Ultrasound (US) imaging is one of the most popular medical imaging modalities, with 3D US imaging gaining popularity recently due to its considerable advantages over 2D US imaging. However, as it is limited by long acquisition times and the huge amount of data processing it requires, methods for reducing these factors have attracted considerable research interest. Compressed sensing (CS) is one of the best candidates for accelerating the acquisition rate and reducing the data processing time without degrading image quality. However, CS is prone to introduce noise-like artefacts due to random under-sampling. To address this issue, we propose a combined prior-based reconstruction method for 3D US imaging. A Laplacian mixture model (LMM) constraint in the wavelet domain is combined with a total variation (TV) constraint to create a new regularization regularization prior. An experimental evaluation conducted to validate our method using synthetic 3D US images shows that it performs better than other approaches in terms of both qualitative and quantitative measures.

  13. Multiscale segmentation method for small inclusion detection in 3D industrial computed tomography

    NASA Astrophysics Data System (ADS)

    Zauner, G.; Harrer, B.; Angermaier, D.; Reiter, M.; Kastner, J.

    2007-06-01

    In this paper a new segmentation method for highly precise inclusion detection in 3D X-ray computed tomography (CT), based on multiresolution denoising methods, is presented. The aim of this work is the automatic 3D-segmentation of small graphite inclusions in cast iron samples. Industrial X-ray computed tomography of metallic samples often suffers from imaging artifacts (e.g. cupping effects) which result in unwanted background image structures, making automated segmentation a difficult task. Additionally, small spatial structures (inclusions and voids) are generally difficult to detect e.g. by standard region based methods like watershed segmentation. Finally, image noise (assuming a Poisson noise characteristic) and the large amount of 3D data have to be considered to obtain good results. The approach presented is based on image subtraction of two different representations of the image under consideration. The first image represents the low spatial frequency content derived by means of wavelet filtering based on the 'a trous' algorithm (i.e. the 'background' content) assuming standard Gaussian noise. The second image is derived by applying a multiresolution denoising scheme based on 'platelet'-filtering, which can produce highly accurate intensity and density estimates assuming Poisson noise. It is shown that the resulting arithmetic difference between these two images can give highly accurate segmentation results with respect to finding small spatial structures in heavily cluttered background structures. Experimental results of industrial CT measurements are presented showing the practicability and reliability of this approach for the proposed task.

  14. A 3D front tracking method on a CPU/GPU system

    SciTech Connect

    Bo, Wurigen; Grove, John

    2011-01-21

    We describe the method to port a sequential 3D interface tracking code to a GPU with CUDA. The interface is represented as a triangular mesh. Interface geometry properties and point propagation are performed on a GPU. Interface mesh adaptation is performed on a CPU. The convergence of the method is assessed from the test problems with given velocity fields. Performance results show overall speedups from 11 to 14 for the test problems under mesh refinement. We also briefly describe our ongoing work to couple the interface tracking method with a hydro solver.

  15. OPTIMIZATION OF 3-D IMAGE-GUIDED NEAR INFRARED SPECTROSCOPY USING BOUNDARY ELEMENT METHOD

    PubMed Central

    Srinivasan, Subhadra; Carpenter, Colin; Pogue, Brian W.; Paulsen, Keith D.

    2010-01-01

    Multimodality imaging systems combining optical techniques with MRI/CT provide high-resolution functional characterization of tissue by imaging molecular and vascular biomarkers. To optimize these hybrid systems for clinical use, faster and automatable algorithms are required for 3-D imaging. Towards this end, a boundary element model was used to incorporate tissue boundaries from MRI/CT into image formation process. This method uses surface rendering to describe light propagation in 3-D using diffusion equation. Parallel computing provided speedup of up to 54% in time of computation. Simulations showed that location of NIRS probe was crucial for quantitatively accurate estimation of tumor response. A change of up to 61% was seen between cycles 1 and 3 in monitoring tissue response to neoadjuvant chemotherapy. PMID:20523751

  16. On 3-D inelastic analysis methods for hot section components. Volume 1: Special finite element models

    NASA Technical Reports Server (NTRS)

    Nakazawa, S.

    1988-01-01

    This annual status report presents the results of work performed during the fourth year of the 3-D Inelastic Analysis Methods for Hot Section Components program (NASA Contract NAS3-23697). The objective of the program is to produce a series of new computer codes permitting more accurate and efficient 3-D analysis of selected hot section components, i.e., combustor liners, turbine blades and turbine vanes. The computer codes embody a progression of math models and are streamlined to take advantage of geometrical features, loading conditions, and forms of material response that distinguish each group of selected components. Volume 1 of this report discusses the special finite element models developed during the fourth year of the contract.

  17. A compact robotic apparatus and method for 3-D ultrasound guided prostate therapy

    NASA Astrophysics Data System (ADS)

    Bax, Jeffrey; Gardi, Lori; Montreuil, Jacques; Smith, David; Fenster, Aaron

    2007-03-01

    Ultrasound imaging has revolutionized the treatment of prostate cancer by producing increasingly accurate models of the prostate and influencing sophisticated targeting procedures for the insertion of radioactive seeds during brachytherapy. Three-dimensional (3D) ultrasound imaging, which allows 3D models of the prostate to be constructed from a series of two-dimensional images, helps to accurately target and implant seeds into the prostate. We have developed a compact robotic apparatus, as well as an effective method for guiding and controlling the insertion of transperineal needles into the prostate. This device has been designed to accurately guide a needle in 3D space so that the needle can be inserted into the prostate at an angle that does not interfere with the pubic arch. The physician can adjust manually or automatically the position of the apparatus in order to place several radioactive seeds into the prostate at designated target locations. Because many physicians are wary of conducting robotic surgical procedures, the apparatus has been developed so that the physician can position the needle for manual insertion and apply a method for manually releasing the needle without damaging the apparatus or endangering the patient.

  18. 3D In Vitro Model for Breast Cancer Research Using Magnetic Levitation and Bioprinting Method.

    PubMed

    Leonard, Fransisca; Godin, Biana

    2016-01-01

    Tumor microenvironment composition and architecture are known as a major factor in orchestrating the tumor growth and its response to various therapies. In this context, in vivo studies are necessary to evaluate the responses. However, while tumor cells can be of human origin, tumor microenvironment in the in vivo models is host-based. On the other hand, in vitro studies in a flat monoculture of tumor cells (the most frequently used in vitro tumor model) are unable to recapitulate the complexity of tumor microenvironment. Three-dimensional (3D) in vitro cell cultures of tumor cells have been proven to be an important experimental tool in understanding mechanisms of tumor growth, response to therapeutics, and transport of nutrients/drugs. We have recently described a novel tool to create 3D co-cultures of tumor cells and cells in the tumor microenvironment. Our method utilizes magnetic manipulation/levitation of the specific ratios of tumor cells and cells in the tumor microenvironment (from human or animal origin) aiding in the formation of tumor spheres with defined cellular composition and density, as quickly as within 24 h. This chapter describes the experimental protocols developed to model the 3D structure of the cancer environment using the above method. PMID:26820961

  19. A 3D neurovascular bundles segmentation method based on MR-TRUS deformable registration

    NASA Astrophysics Data System (ADS)

    Yang, Xiaofeng; Rossi, Peter; Jani, Ashesh B.; Mao, Hui; Ogunleye, Tomi; Curran, Walter J.; Liu, Tian

    2015-03-01

    In this paper, we propose a 3D neurovascular bundles (NVB) segmentation method for ultrasound (US) image by integrating MR and transrectal ultrasound (TRUS) images through MR-TRUS deformable registration. First, 3D NVB was contoured by a physician in MR images, and the 3D MRdefined NVB was then transformed into US images using a MR-TRUS registration method, which models the prostate tissue as an elastic material, and jointly estimates the boundary deformation and the volumetric deformations under the elastic constraint. This technique was validated with a clinical study of 6 patients undergoing radiation therapy (RT) treatment for prostate cancer. The accuracy of our approach was assessed through the locations of landmarks, as well as previous ultrasound Doppler images of patients. MR-TRUS registration was successfully performed for all patients. The mean displacement of the landmarks between the post-registration MR and TRUS images was less than 2 mm, and the average NVB volume Dice Overlap Coefficient was over 89%. This NVB segmentation technique could be a useful tool as we try to spare the NVB in prostate RT, monitor NVB response to RT, and potentially improve post-RT potency outcomes.

  20. Comparing a novel automatic 3D method for LGE-CMR quantification of scar size with established methods.

    PubMed

    Woie, Leik; Måløy, Frode; Eftestøl, Trygve; Engan, Kjersti; Edvardsen, Thor; Kvaløy, Jan Terje; Ørn, Stein

    2014-02-01

    Current methods for the estimation of infarct size by late-enhanced cardiac magnetic imaging are based upon 2D analysis that first determines the size of the infarction in each slice, and thereafter adds the infarct sizes from each slice to generate a volume. We present a novel, automatic 3D method that estimates infarct size by a simultaneous analysis of all pixels from all slices. In a population of 54 patients with ischemic scars, the infarct size estimated by the automatic 3D method was compared with four established 2D methods. The new 3D method defined scar as the sum of all pixels with signal intensity (SI) ≥35 % of max SI from the complete myocardium, border zone: SI 35-50 % of max SI and core as SI ≥50 % of max SI. The 3D method yielded smaller infarct size (-2.8 ± 2.3 %) and core size (-3.0 ± 1.7 %) than the 2D method most similar to ours. There was no difference in the size of the border zone (0.2 ± 1.4 %). The 3D method demonstrated stronger correlations between scar size and left ventricular (LV) remodelling parameters (LV ejection fraction: r = -0.71, p < 0.0005, LV end-diastolic index: r = 0.54, p < 0.0005, and LV end-systolic index: r = 0.59, p < 0.0005) compared with conventional 2D methods. Infarct size estimation by our novel 3D automatic method is without the need for manual demarcation of the scar; it is less time-consuming and has a stronger correlation with remodelling parameters compared with existing methods.

  1. Ion-migration Polarity Change and 3D Shape Evaluation in the WDT Method

    NASA Astrophysics Data System (ADS)

    Tang, Chao; Mitobe, Kazutaka; Yoshimura, Noboru

    In this paper, protection resistance was measured as a parameter for the 3D shape of the dendrite, which was produced on the copper, printed wired board by the WDT method. The measurement was occurred using the 3D shape measurement system. We measured the 3D shape of a dendrite in a nonuniform electric field with a changing polarity. Moreover, the polar effect of ion-migration was examined by the 3D shape electric field analysis using ANSYS. Consequently, the height of the accumulation things at anode was higher than the negative pole side under round shaped cathode condition. Similarly, the quantity of the accumulation thing is also found larger at anode. On the other hand, the dispersal of the accumulation thing is observed between the anode and the negative pole under a round shaped anode conditions. And it turns out that there is also smaller accumulation thing at the tip part of a round shaped electrode. Moreover, for a same protection resistance, the amounts of generating of the accumulation objects per unit electric charge were larger for round shaped anode conditions comparing to the cathode. It is seen from 3d shape electric field analysis, that horizontal part of the electric field vector at anode is greater than the cathode. At the same time, the field intensity at anode is also larger than cathode. For a round shaped anode in 3D shape electric field analysis, the strongest electric field vector was found between a round shape electrode tip part and flat electrode. Although in the round shape cathode, the electric field vector had become the strongest between the flat electrode and the round shape electrode tip part. The electric field intensity of a nearby flat electrode was strong for a round shape electrode facing the field. Since the action states of the accumulation thing after a short circuit is different depending on the polarity of electrode for a nonuniform electric field conditions, it appears that it will not take much time to occur a failure

  2. 3D printing method for freeform fabrication of optical phantoms simulating heterogeneous biological tissue

    NASA Astrophysics Data System (ADS)

    Wang, Minjie; Shen, Shuwei; Yang, Jie; Dong, Erbao; Xu, Ronald

    2014-03-01

    The performance of biomedical optical imaging devices heavily relies on appropriate calibration. However, many of existing calibration phantoms for biomedical optical devices are based on homogenous materials without considering the multi-layer heterogeneous structures observed in biological tissue. Using such a phantom for optical calibration may result in measurement bias. To overcome this problem, we propose a 3D printing method for freeform fabrication of tissue simulating phantoms with multilayer heterogeneous structure. The phantom simulates not only the morphologic characteristics of biological tissue but also absorption and scattering properties. The printing system is based on a 3D motion platform with coordinated control of the DC motors. A special jet nozzle is designed to mix base, scattering, and absorption materials at different ratios. 3D tissue structures are fabricated through layer-by-layer printing with selective deposition of phantom materials of different ingredients. Different mixed ratios of base, scattering and absorption materials have been tested in order to optimize the printing outcome. A spectrometer and a tissue spectrophotometer are used for characterizing phantom absorption and scattering properties. The goal of this project is to fabricate skin tissue simulating phantoms as a traceable standard for the calibration of biomedical optical spectral devices.

  3. A direct multi-volume rendering method aiming at comparisons of 3-D images and models.

    PubMed

    Jacq, J J; Roux, C J

    1997-03-01

    We present a new method for direct volume rendering of multiple three-dimensional (3-D) functions using a density emitter model. This work aims at obtaining visual assessment of the results of a 3-D image registration algorithm which operates on anisotropic and non segmented medical data. We first discuss the fundamentals associated with direct, simultaneous rendering of such datasets. Then, we recall the fuzzy classification and fuzzy surface rendering theory within the density emitter model terminology, and propose an extension of standard direct volume rendering that can handle the rendering of two or more 3-D functions; this consists of the definition of merging rules that are applied on emitter clouds. The included rendering applications are related on one hand, to volume-to-volume registration, and on the other hand, to surface-to-volume registration: the first case is concerned with global elastic registration of CT data, and the second one presents fitting of an implicit surface over a CT data subset. In these two medical imaging application cases, our rendering scheme offers a comprehensive appreciation of the relative position of structural information.

  4. A modular numerical method for implicit 0D/3D coupling in cardiovascular finite element simulations

    NASA Astrophysics Data System (ADS)

    Moghadam, Mahdi Esmaily; Vignon-Clementel, Irene E.; Figliola, Richard; Marsden, Alison L.; Modeling Of Congenital Hearts Alliance (Mocha) Investigators

    2013-07-01

    Implementation of boundary conditions in cardiovascular simulations poses numerical challenges due to the complex dynamic behavior of the circulatory system. The use of elaborate closed-loop lumped parameter network (LPN) models of the heart and the circulatory system as boundary conditions for computational fluid dynamics (CFD) simulations can provide valuable global dynamic information, particularly for patient specific simulations. In this paper, the necessary formulation for coupling an arbitrary LPN to a finite element Navier-Stokes solver is presented. A circuit analogy closed-loop LPN is solved numerically, and pressure and flow information is iteratively passed between the 0D and 3D domains at interface boundaries, resulting in a time-implicit scheme. For Neumann boundaries, an implicit method, regardless of the LPN, is presented to achieve the desired stability and convergence properties. Numerical procedures for passing flow and pressure information between the 0D and 3D domains are described, and implicit, semi-implicit, and explicit quasi-Newton formulations are compared. The issue of divergence in the presence of backflow is addressed via a stabilized boundary formulation. The requirements for coupling Dirichlet boundary conditions are also discussed and this approach is compared in detail to that of the Neumann coupled boundaries. Having the option to select between Dirichlet and Neumann coupled boundary conditions increases the flexibility of current framework by allowing a wide range of components to be used at the 3D-0D interface.

  5. GPU accelerated simulations of 3D deterministic particle transport using discrete ordinates method

    SciTech Connect

    Gong Chunye; Liu Jie; Chi Lihua; Huang Haowei; Fang Jingyue; Gong Zhenghu

    2011-07-01

    Graphics Processing Unit (GPU), originally developed for real-time, high-definition 3D graphics in computer games, now provides great faculty in solving scientific applications. The basis of particle transport simulation is the time-dependent, multi-group, inhomogeneous Boltzmann transport equation. The numerical solution to the Boltzmann equation involves the discrete ordinates (S{sub n}) method and the procedure of source iteration. In this paper, we present a GPU accelerated simulation of one energy group time-independent deterministic discrete ordinates particle transport in 3D Cartesian geometry (Sweep3D). The performance of the GPU simulations are reported with the simulations of vacuum boundary condition. The discussion of the relative advantages and disadvantages of the GPU implementation, the simulation on multi GPUs, the programming effort and code portability are also reported. The results show that the overall performance speedup of one NVIDIA Tesla M2050 GPU ranges from 2.56 compared with one Intel Xeon X5670 chip to 8.14 compared with one Intel Core Q6600 chip for no flux fixup. The simulation with flux fixup on one M2050 is 1.23 times faster than on one X5670.

  6. 3D modelling of the electromagnetic response of geophysical targets using the FDTD method

    SciTech Connect

    Debroux, P.S.

    1996-05-01

    A publicly available and maintained electromagnetic finite-difference time domain (FDTD) code has been applied to the forward modelling of the response of 1D, 2D and 3D geophysical targets to a vertical magnetic dipole excitation. The FDTD method is used to analyze target responses in the 1 MHz to 100 MHz range, where either conduction or displacement currents may have the controlling role. The response of the geophysical target to the excitation is presented as changes in the magnetic field ellipticity. The results of the FDTD code compare favorably with previously published integral equation solutions of the response of 1D targets, and FDTD models calculated with different finite-difference cell sizes are compared to find the effect of model discretization on the solution. The discretization errors, calculated as absolute error in ellipticity, are presented for the different ground geometry models considered, and are, for the most part, below 10% of the integral equation solutions. Finally, the FDTD code is used to calculate the magnetic ellipticity response of a 2D survey and a 3D sounding of complicated geophysical targets. The response of these 2D and 3D targets are too complicated to be verified with integral equation solutions, but show the proper low- and high-frequency responses.

  7. First order error propagation of the procrustes method for 3D attitude estimation.

    PubMed

    Dorst, Leo

    2005-02-01

    The well-known Procrustes method determines the optimal rigid body motion that registers two point clouds by minimizing the square distances of the residuals. In this paper, we perform the first order error analysis of this method for the 3D case, fully specifying how directional noise in the point clouds affects the estimated parameters of the rigid body motion. These results are much more specific than the error bounds which have been established in numerical analysis. We provide an intuitive understanding of the outcome to facilitate direct use in applications.

  8. A cut cell method for the 3D simulation of Crookes radiometer

    SciTech Connect

    Dechriste, Guillaume; Mieussens, Luc

    2014-12-09

    Devices involved in engineering applications, such as vacuum pumps or MEMS, may be made of several moving parts. This raise the issue of the simulation of rarefied gas flow around moving boundaries. We propose a simple process, known as cut cell method, to treat the motion of a solid body in the framework of the deterministic solving of a kinetic equation. Up to our knowledge, this is the first time that this approach has been used for this kind of simulations. The method is illustrated by the 2D and 3D simulations of a Crookes radiometer.

  9. Determining canonical views of 3D object using minimum description length criterion and compressive sensing method

    NASA Astrophysics Data System (ADS)

    Chen, Ping-Feng; Krim, Hamid

    2008-02-01

    In this paper, we propose using two methods to determine the canonical views of 3D objects: minimum description length (MDL) criterion and compressive sensing method. MDL criterion searches for the description length that achieves the balance between model accuracy and parsimony. It takes the form of the sum of a likelihood and a penalizing term, where the likelihood is in favor of model accuracy such that more views assists the description of an object, while the second term penalizes lengthy description to prevent overfitting of the model. In order to devise the likelihood term, we propose a model to represent a 3D object as the weighted sum of multiple range images, which is used in the second method to determine the canonical views as well. In compressive sensing method, an intelligent way of parsimoniously sampling an object is presented. We make direct inference from Donoho1 and Candes'2 work, and adapt it to our model. Each range image is viewed as a projection, or a sample, of a 3D model, and by using compressive sensing theory, we are able to reconstruct the object with an overwhelming probability by scarcely sensing the object in a random manner. Compressive sensing is different from traditional compressing method in the sense that the former compress things in the sampling stage while the later collects a large number of samples and then compressing mechanism is carried out thereafter. Compressive sensing scheme is particularly useful when the number of sensors are limited or the sampling machinery cost much resource or time.

  10. A new method to combine 3D reconstruction volumes for multiple parallel circular cone beam orbits

    PubMed Central

    Baek, Jongduk; Pelc, Norbert J.

    2010-01-01

    Purpose: This article presents a new reconstruction method for 3D imaging using a multiple 360° circular orbit cone beam CT system, specifically a way to combine 3D volumes reconstructed with each orbit. The main goal is to improve the noise performance in the combined image while avoiding cone beam artifacts. Methods: The cone beam projection data of each orbit are reconstructed using the FDK algorithm. When at least a portion of the total volume can be reconstructed by more than one source, the proposed combination method combines these overlap regions using weighted averaging in frequency space. The local exactness and the noise performance of the combination method were tested with computer simulations of a Defrise phantom, a FORBILD head phantom, and uniform noise in the raw data. Results: A noiseless simulation showed that the local exactness of the reconstructed volume from the source with the smallest tilt angle was preserved in the combined image. A noise simulation demonstrated that the combination method improved the noise performance compared to a single orbit reconstruction. Conclusions: In CT systems which have overlap volumes that can be reconstructed with data from more than one orbit and in which the spatial frequency content of each reconstruction can be calculated, the proposed method offers improved noise performance while keeping the local exactness of data from the source with the smallest tilt angle. PMID:21089770

  11. A method for the evaluation of thousands of automated 3D stem cell segmentations.

    PubMed

    Bajcsy, P; Simon, M; Florczyk, S J; Simon, C G; Juba, D; Brady, M C

    2015-12-01

    There is no segmentation method that performs perfectly with any dataset in comparison to human segmentation. Evaluation procedures for segmentation algorithms become critical for their selection. The problems associated with segmentation performance evaluations and visual verification of segmentation results are exaggerated when dealing with thousands of three-dimensional (3D) image volumes because of the amount of computation and manual inputs needed. We address the problem of evaluating 3D segmentation performance when segmentation is applied to thousands of confocal microscopy images (z-stacks). Our approach is to incorporate experimental imaging and geometrical criteria, and map them into computationally efficient segmentation algorithms that can be applied to a very large number of z-stacks. This is an alternative approach to considering existing segmentation methods and evaluating most state-of-the-art algorithms. We designed a methodology for 3D segmentation performance characterization that consists of design, evaluation and verification steps. The characterization integrates manual inputs from projected surrogate 'ground truth' of statistically representative samples and from visual inspection into the evaluation. The novelty of the methodology lies in (1) designing candidate segmentation algorithms by mapping imaging and geometrical criteria into algorithmic steps, and constructing plausible segmentation algorithms with respect to the order of algorithmic steps and their parameters, (2) evaluating segmentation accuracy using samples drawn from probability distribution estimates of candidate segmentations and (3) minimizing human labour needed to create surrogate 'truth' by approximating z-stack segmentations with 2D contours from three orthogonal z-stack projections and by developing visual verification tools. We demonstrate the methodology by applying it to a dataset of 1253 mesenchymal stem cells. The cells reside on 10 different types of biomaterial

  12. 3D resistivity inversion using an improved Genetic Algorithm based on control method of mutation direction

    NASA Astrophysics Data System (ADS)

    Liu, B.; Li, S. C.; Nie, L. C.; Wang, J.; L, X.; Zhang, Q. S.

    2012-12-01

    Traditional inversion method is the most commonly used procedure for three-dimensional (3D) resistivity inversion, which usually takes the linearization of the problem and accomplish it by iterations. However, its accuracy is often dependent on the initial model, which can make the inversion trapped in local optima, even cause a bad result. Non-linear method is a feasible way to eliminate the dependence on the initial model. However, for large problems such as 3D resistivity inversion with inversion parameters exceeding a thousand, main challenges of non-linear method are premature and quite low search efficiency. To deal with these problems, we present an improved Genetic Algorithm (GA) method. In the improved GA method, smooth constraint and inequality constraint are both applied on the object function, by which the degree of non-uniqueness and ill-conditioning is decreased. Some measures are adopted from others by reference to maintain the diversity and stability of GA, e.g. real-coded method, and the adaptive adjustment of crossover and mutation probabilities. Then a generation method of approximately uniform initial population is proposed in this paper, with which uniformly distributed initial generation can be produced and the dependence on initial model can be eliminated. Further, a mutation direction control method is presented based on the joint algorithm, in which the linearization method is embedded in GA. The update vector produced by linearization method is used as mutation increment to maintain a better search direction compared with the traditional GA with non-controlled mutation operation. By this method, the mutation direction is optimized and the search efficiency is improved greatly. The performance of improved GA is evaluated by comparing with traditional inversion results in synthetic example or with drilling columnar sections in practical example. The synthetic and practical examples illustrate that with the improved GA method we can eliminate

  13. Solar panel truss mounting systems and methods

    DOEpatents

    Al-Haddad, Tristan Farris; Cavieres, Andres; Gentry, Russell; Goodman, Joseph; Nolan, Wade; Pitelka, Taylor; Rahimzadeh, Keyan; Brooks, Bradley; Lohr, Joshua; Crooks, Ryan; Porges, Jamie; Rubin, Daniel

    2015-10-20

    An exemplary embodiment of the present invention provides a solar panel truss mounting system comprising a base and a truss assembly coupled to the base. The truss assembly comprises a first panel rail mount, second panel rail mount parallel to the first panel rail mount, base rail mount parallel to the first and second panel rail mounts, and a plurality of support members. A first portion of the plurality of support members extends between the first and second panel rail mounts. A second portion of the plurality of support members extends between the first panel rail mount and the base rail mount. A third portion of the plurality of support members extends between the second panel rail mount and the base rail mount. The system can further comprise a plurality of connectors for coupling a plurality of photovoltaic solar panels to the truss assembly.

  14. Solar panel truss mounting systems and methods

    DOEpatents

    Al-Haddad, Tristan Farris; Cavieres, Andres; Gentry, Russell; Goodman, Joseph; Nolan, Wade; Pitelka, Taylor; Rahimzadeh, Keyan; Brooks, Bradley; Lohr, Joshua; Crooks, Ryan; Porges, Jamie; Rubin, Daniel

    2016-06-28

    An exemplary embodiment of the present invention provides a solar panel truss mounting system comprising a base and a truss assembly coupled to the base. The truss assembly comprises a first panel rail mount, second panel rail mount parallel to the first panel rail mount, base rail mount parallel to the first and second panel rail mounts, and a plurality of support members. A first portion of the plurality of support members extends between the first and second panel rail mounts. A second portion of the plurality of support members extends between the first panel rail mount and the base rail mount. A third portion of the plurality of support members extends between the second panel rail mount and the base rail mount. The system can further comprise a plurality of connectors for coupling a plurality of photovoltaic solar panels to the truss assembly.

  15. An Analysis on 3d Marine Csem Responses Based on a Finite Difference Method

    NASA Astrophysics Data System (ADS)

    Han, N.; Nam, M.; Kim, H.

    2010-12-01

    Three-dimensional (3D) marine controlled-source electromagnetic (CSEM) data are analyzed using a modeling algorithm based on a finite difference method. The algorithm employs the secondary-field formulation of a vector Helmholtz equation for electric fields to avoid singularity problems. Primary fields are calculated analytically using a numerical filter for the Hankel transform for a three-layered 1D background model, that consists of air, sea and sub-seafloor; the model includes the air layer to consider air waves. Several numerical filters for the Hankel transform are compared in terms of their accuracy and computation time. Using the analytically-calculated primary fields, we compute secondary fields using a finite difference method with a staggered grid. The grid defines electric fields along cell edges while magnetic fields at cell faces. We verified the developed modeling algorithm using not only 1D analytic solutions but also responses for a 3D model, that are computed by other algorithms. Using disk models, this study analyzes marine CSEM data for horizontal and vertical electric and magnetic dipole sources to determine the most effective source-receiver configuration for the exploration of 3D thin and resistive hydrocarbon targets. Numerical results show that marine CSEM has exciting potential for oilfield characterization. Further, air waves should be properly considered in modeling and interpretation of marine CSEM data because they have great effects on marine CSEM data. For an analysis on bathymetry effects, a stepwise-bathymetry model was constructed. Bathymetry causes significant effects on marine CSEM data because transmitter and receivers are located very far each other. We propose a bathymetry correction method for a proper interpretation of marine CSEM data distorted by bathymetry.

  16. A novel 3D absorption correction method for quantitative EDX-STEM tomography.

    PubMed

    Burdet, Pierre; Saghi, Z; Filippin, A N; Borrás, A; Midgley, P A

    2016-01-01

    This paper presents a novel 3D method to correct for absorption in energy dispersive X-ray (EDX) microanalysis of heterogeneous samples of unknown structure and composition. By using STEM-based tomography coupled with EDX, an initial 3D reconstruction is used to extract the location of generated X-rays as well as the X-ray path through the sample to the surface. The absorption correction needed to retrieve the generated X-ray intensity is then calculated voxel-by-voxel estimating the different compositions encountered by the X-ray. The method is applied to a core/shell nanowire containing carbon and oxygen, two elements generating highly absorbed low energy X-rays. Absorption is shown to cause major reconstruction artefacts, in the form of an incomplete recovery of the oxide and an erroneous presence of carbon in the shell. By applying the correction method, these artefacts are greatly reduced. The accuracy of the method is assessed using reference X-ray lines with low absorption.

  17. A novel 3D absorption correction method for quantitative EDX-STEM tomography.

    PubMed

    Burdet, Pierre; Saghi, Z; Filippin, A N; Borrás, A; Midgley, P A

    2016-01-01

    This paper presents a novel 3D method to correct for absorption in energy dispersive X-ray (EDX) microanalysis of heterogeneous samples of unknown structure and composition. By using STEM-based tomography coupled with EDX, an initial 3D reconstruction is used to extract the location of generated X-rays as well as the X-ray path through the sample to the surface. The absorption correction needed to retrieve the generated X-ray intensity is then calculated voxel-by-voxel estimating the different compositions encountered by the X-ray. The method is applied to a core/shell nanowire containing carbon and oxygen, two elements generating highly absorbed low energy X-rays. Absorption is shown to cause major reconstruction artefacts, in the form of an incomplete recovery of the oxide and an erroneous presence of carbon in the shell. By applying the correction method, these artefacts are greatly reduced. The accuracy of the method is assessed using reference X-ray lines with low absorption. PMID:26484792

  18. A 3D finite element ALE method using an approximate Riemann solution

    DOE PAGES

    Chiravalle, V. P.; Morgan, N. R.

    2016-08-09

    Arbitrary Lagrangian–Eulerian finite volume methods that solve a multidimensional Riemann-like problem at the cell center in a staggered grid hydrodynamic (SGH) arrangement have been proposed. This research proposes a new 3D finite element arbitrary Lagrangian–Eulerian SGH method that incorporates a multidimensional Riemann-like problem. Here, two different Riemann jump relations are investigated. A new limiting method that greatly improves the accuracy of the SGH method on isentropic flows is investigated. A remap method that improves upon a well-known mesh relaxation and remapping technique in order to ensure total energy conservation during the remap is also presented. Numerical details and test problemmore » results are presented.« less

  19. On 3-D inelastic analysis methods for hot section components (base program)

    NASA Technical Reports Server (NTRS)

    Wilson, R. B.; Bak, M. J.; Nakazawa, S.; Banerjee, P. K.

    1986-01-01

    A 3-D Inelastic Analysis Method program is described. This program consists of a series of new computer codes embodying a progression of mathematical models (mechanics of materials, special finite element, boundary element) for streamlined analysis of: (1) combustor liners, (2) turbine blades, and (3) turbine vanes. These models address the effects of high temperatures and thermal/mechanical loadings on the local (stress/strain)and global (dynamics, buckling) structural behavior of the three selected components. Three computer codes, referred to as MOMM (Mechanics of Materials Model), MHOST (Marc-Hot Section Technology), and BEST (Boundary Element Stress Technology), have been developed and are briefly described in this report.

  20. 3-D inelastic analysis methods for hot section components. Volume 2: Advanced special functions models

    NASA Technical Reports Server (NTRS)

    Wilson, R. B.; Banerjee, P. K.

    1987-01-01

    This Annual Status Report presents the results of work performed during the third year of the 3-D Inelastic Analysis Methods for Hot Sections Components program (NASA Contract NAS3-23697). The objective of the program is to produce a series of computer codes that permit more accurate and efficient three-dimensional analyses of selected hot section components, i.e., combustor liners, turbine blades, and turbine vanes. The computer codes embody a progression of mathematical models and are streamlined to take advantage of geometrical features, loading conditions, and forms of material response that distinguish each group of selected components.

  1. Numerical Analysis of Electromagnetic Scattering from 3-D Dielectric Objects Using the Yasuura Method

    NASA Astrophysics Data System (ADS)

    Koba, Koichi; Ikuno, Hiroyoshi; Kawano, Mitsunori

    In order to calculate 3-D electromagnetic scattering problems by dielectric objects which we need to solve a big size simultaneous linear equation, we present a rapid algorithm on the Yasuura method where we accelerate the convergence rate of solution by using an array of multipoles as well as a conventional multipole. As a result, we can obtain the radar cross sections of dielectric objects in the optical wave region over a relative wide frequency range and a TDG pulse response. Furthermore, we analyze the scattering data about dielectric objects by using the pulse responses cut by an appropriate window function in the time domain and clarify the scattering processes on dielectric objects.

  2. Computation of an Underexpanded 3-D Rectangular Jet by the CE/SE Method

    NASA Technical Reports Server (NTRS)

    Loh, Ching Y.; Himansu, Ananda; Wang, Xiao Y.; Jorgenson, Philip C. E.

    2000-01-01

    Recently, an unstructured three-dimensional space-time conservation element and solution element (CE/SE) Euler solver was developed. Now it is also developed for parallel computation using METIS for domain decomposition and MPI (message passing interface). The method is employed here to numerically study the near-field of a typical 3-D rectangular under-expanded jet. For the computed case-a jet with Mach number Mj = 1.6. with a very modest grid of 1.7 million tetrahedrons, the flow features such as the shock-cell structures and the axis switching, are in good qualitative agreement with experimental results.

  3. Dynamic analysis of radial force density in brushless DC motor using 3-D equivalent magnetic circuit network method

    SciTech Connect

    Hur, J.; Chun, Y.D.; Lee, J.; Hyun, D.S.

    1998-09-01

    The distribution of radial force density in brushless permanent magnet DC motor is not uniform in axial direction. The analysis of radial force density has to consider the 3-D shape of teeth and overhand, because the radial force density causes vibration and acts on the surface of teeth inconstantly. For the analysis, a new 3-D equivalent magnetic circuit network method is used to account the rotor movement without remesh. The radial force density is calculated and analyzed by Maxwell stress tensor and discrete Fourier transform (DFT) respectively. The results of 3-D equivalent magnetic circuit method have been compared with the results of 3-D FEM.

  4. A hybrid method for the computation of quasi-3D seismograms.

    NASA Astrophysics Data System (ADS)

    Masson, Yder; Romanowicz, Barbara

    2013-04-01

    The development of powerful computer clusters and efficient numerical computation methods, such as the Spectral Element Method (SEM) made possible the computation of seismic wave propagation in a heterogeneous 3D earth. However, the cost of theses computations is still problematic for global scale tomography that requires hundreds of such simulations. Part of the ongoing research effort is dedicated to the development of faster modeling methods based on the spectral element method. Capdeville et al. (2002) proposed to couple SEM simulations with normal modes calculation (C-SEM). Nissen-Meyer et al. (2007) used 2D SEM simulations to compute 3D seismograms in a 1D earth model. Thanks to these developments, and for the first time, Lekic et al. (2011) developed a 3D global model of the upper mantle using SEM simulations. At the local and continental scale, adjoint tomography that is using a lot of SEM simulation can be implemented on current computers (Tape, Liu et al. 2009). Due to their smaller size, these models offer higher resolution. They provide us with images of the crust and the upper part of the mantle. In an attempt to teleport such local adjoint tomographic inversions into the deep earth, we are developing a hybrid method where SEM computation are limited to a region of interest within the earth. That region can have an arbitrary shape and size. Outside this region, the seismic wavefield is extrapolated to obtain synthetic data at the Earth's surface. A key feature of the method is the use of a time reversal mirror to inject the wavefield induced by distant seismic source into the region of interest (Robertsson and Chapman 2000). We compute synthetic seismograms as follow: Inside the region of interest, we are using regional spectral element software RegSEM to compute wave propagation in 3D. Outside this region, the wavefield is extrapolated to the surface by convolution with the Green's functions from the mirror to the seismic stations. For now, these

  5. Subcellular Microanatomy by 3D Deconvolution Brightfield Microscopy: Method and Analysis Using Human Chromatin in the Interphase Nucleus

    PubMed Central

    Tadrous, Paul Joseph

    2012-01-01

    Anatomy has advanced using 3-dimensional (3D) studies at macroscopic (e.g., dissection, injection moulding of vessels, radiology) and microscopic (e.g., serial section reconstruction with light and electron microscopy) levels. This paper presents the first results in human cells of a new method of subcellular 3D brightfield microscopy. Unlike traditional 3D deconvolution and confocal techniques, this method is suitable for general application to brightfield microscopy. Unlike brightfield serial sectioning it has subcellular resolution. Results are presented of the 3D structure of chromatin in the interphase nucleus of two human cell types, hepatocyte and plasma cell. I show how the freedom to examine these structures in 3D allows greater morphological discrimination between and within cell types and the 3D structural basis for the classical “clock-face” motif of the plasma cell nucleus is revealed. Potential for further applications discussed. PMID:22567315

  6. Fast 3D inversion of airborne gravity-gradiometry data using Lanczos bidiagonalization method

    NASA Astrophysics Data System (ADS)

    Meng, Zhaohai; Li, Fengting; Zhang, Dailei; Xu, Xuechun; Huang, Danian

    2016-09-01

    We developed a new fast inversion method for to process and interpret airborne gravity gradiometry data, which was based on Lanczos bidiagonalization algorithm. Here, we describe the application of this new 3D gravity gradiometry inversion method to recover a subsurface density distribution model from the airborne measured gravity gradiometry anomalies. For this purpose, the survey area is divided into a large number of rectangular cells with each cell possessing a constant unknown density. It is well known that the solution of large linear gravity gradiometry is an ill-posed problem since using the smoothest inversion method is considerably time consuming. We demonstrate that the Lanczos bidiagonalization method can be an appropriate algorithm to solve a Tikhonov solver time cost function for resolving the large equations within a short time. Lanczos bidiagonalization is designed to make the very large gravity gradiometry forward modeling matrices to become low-rank, which will considerably reduce the running time of the inversion method. We also use a weighted generalized cross validation method to choose the appropriate Tikhonov parameter to improve inversion results. The inversion incorporates a model norm that allows us to attain the smoothing and depth of the solution; in addition, the model norm counteracts the natural decay of the kernels, which concentrate at shallow depths. The method is applied on noise-contaminated synthetic gravity gradiometry data to demonstrate its suitability for large 3D gravity gradiometry data inversion. The airborne gravity gradiometry data from the Vinton Salt Dome, USE, were considered as a case study. The validity of the new method on real data is discussed with reference to the Vinton Dome inversion result. The intermediate density values in the constructed model coincide well with previous results and geological information. This demonstrates the validity of the gravity gradiometry inversion method.

  7. A segmentation method for 3D visualization of neurons imaged with a confocal laser scanning microscope

    NASA Astrophysics Data System (ADS)

    Anderson, Jeffrey R.; Barrett, Steven F.; Wilcox, Michael J.

    2005-04-01

    Our understanding of the world around us is based primarily on three-dimensional information because of the environment in which we live and interact. Medical or biological image information is often collected in the form of two-dimensional, serial section images. As such, it is difficult for the observer to mentally reconstruct the three dimensional features of each object. Although many image rendering software packages allow for 3D views of the serial sections, they lack the ability to segment, or isolate different objects in the data set. Segmentation is the key to creating 3D renderings of distinct objects from serial slice images, like separate pieces to a puzzle. This paper describes a segmentation method for objects recorded with serial section images. The user defines threshold levels and object labels on a single image of the data set that are subsequently used to automatically segment each object in the remaining images of the same data set, while maintaining boundaries between contacting objects. The performance of the algorithm is verified using mathematically defined shapes. It is then applied to the visual neurons of the housefly, Musca domestica. Knowledge of the fly"s visual system may lead to improved machine visions systems. This effort has provided the impetus to develop this segmentation algorithm. The described segmentation method can be applied to any high contrast serial slice data set that is well aligned and registered. The medical field alone has many applications for rapid generation of 3D segmented models from MRI and other medical imaging modalities.

  8. ROI-preserving 3D video compression method utilizing depth information

    NASA Astrophysics Data System (ADS)

    Ti, Chunli; Xu, Guodong; Guan, Yudong; Teng, Yidan

    2015-09-01

    Efficiently transmitting the extra information of three dimensional (3D) video is becoming a key issue of the development of 3DTV. 2D plus depth format not only occupies the smaller bandwidth and is compatible transmission under the condition of the existing channel, but also can provide technique support for advanced 3D video compression in some extend. This paper proposes an ROI-preserving compression scheme to further improve the visual quality at a limited bit rate. According to the connection between the focus of Human Visual System (HVS) and depth information, region of interest (ROI) can be automatically selected via depth map progressing. The main improvement from common method is that a meanshift based segmentation is executed to the depth map before foreground ROI selection to keep the integrity of scene. Besides, the sensitive areas along the edges are also protected. The Spatio-temporal filtering adapting to H.264 is used to the non-ROI of both 2D video and depth map before compression. Experiments indicate that, the ROI extracted by this method is more undamaged and according with subjective feeling, and the proposed method can keep the key high-frequency information more effectively while the bit rate is reduced.

  9. Study of 3D printing method for GRIN micro-optics devices

    NASA Astrophysics Data System (ADS)

    Wang, P. J.; Yeh, J. A.; Hsu, W. Y.; Cheng, Y. C.; Lee, W.; Wu, N. H.; Wu, C. Y.

    2016-03-01

    Conventional optical elements are based on either refractive or reflective optics theory to fulfill the design specifications via optics performance data. In refractive optical lenses, the refractive index of materials and radius of curvature of element surfaces determine the optical power and wavefront aberrations so that optical performance can be further optimized iteratively. Although gradient index (GRIN) phenomenon in optical materials is well studied for more than a half century, the optics theory in lens design via GRIN materials is still yet to be comprehensively investigated before realistic GRIN lenses are manufactured. In this paper, 3D printing method for manufacture of micro-optics devices with special features has been studied based on methods reported in the literatures. Due to the additive nature of the method, GRIN lenses in micro-optics devices seem to be readily achievable if a design methodology is available. First, derivation of ray-tracing formulae is introduced for all possible structures in GRIN lenses. Optics simulation program is employed for characterization of GRIN lenses with performance data given by aberration coefficients in Zernike polynomial. Finally, a proposed structure of 3D printing machine is described with conceptual illustration.

  10. A least-squares finite element method for 3D incompressible Navier-Stokes equations

    NASA Technical Reports Server (NTRS)

    Jiang, Bo-Nan; Lin, T. L.; Hou, Lin-Jun; Povinelli, Louis A.

    1993-01-01

    The least-squares finite element method (LSFEM) based on the velocity-pressure-vorticity formulation is applied to three-dimensional steady incompressible Navier-Stokes problems. This method can accommodate equal-order interpolations, and results in symmetric, positive definite algebraic system. An additional compatibility equation, i.e., the divergence of vorticity vector should be zero, is included to make the first-order system elliptic. The Newton's method is employed to linearize the partial differential equations, the LSFEM is used to obtain discretized equations, and the system of algebraic equations is solved using the Jacobi preconditioned conjugate gradient method which avoids formation of either element or global matrices (matrix-free) to achieve high efficiency. The flow in a half of 3D cubic cavity is calculated at Re = 100, 400, and 1,000 with 50 x 52 x 25 trilinear elements. The Taylor-Gortler-like vortices are observed at Re = 1,000.

  11. Multilevel local refinement and multigrid methods for 3-D turbulent flow

    SciTech Connect

    Liao, C.; Liu, C.; Sung, C.H.; Huang, T.T.

    1996-12-31

    A numerical approach based on multigrid, multilevel local refinement, and preconditioning methods for solving incompressible Reynolds-averaged Navier-Stokes equations is presented. 3-D turbulent flow around an underwater vehicle is computed. 3 multigrid levels and 2 local refinement grid levels are used. The global grid is 24 x 8 x 12. The first patch is 40 x 16 x 20 and the second patch is 72 x 32 x 36. 4th order artificial dissipation are used for numerical stability. The conservative artificial compressibility method are used for further improvement of convergence. To improve the accuracy of coarse/fine grid interface of local refinement, flux interpolation method for refined grid boundary is used. The numerical results are in good agreement with experimental data. The local refinement can improve the prediction accuracy significantly. The flux interpolation method for local refinement can keep conservation for a composite grid, therefore further modify the prediction accuracy.

  12. Fast 3D Focusing Inversion of Gravity Data Using Reweighted Regularized Lanczos Bidiagonalization Method

    NASA Astrophysics Data System (ADS)

    Rezaie, Mohammad; Moradzadeh, Ali; Kalate, Ali Nejati; Aghajani, Hamid

    2016-09-01

    Inversion of gravity data is one of the important steps in the interpretation of practical data. One of the most interesting geological frameworks for gravity data inversion is the detection of sharp boundaries between orebody and host rocks. The focusing inversion is able to reconstruct a sharp image of the geological target. This technique can be efficiently applied for the quantitative interpretation of gravity data. In this study, a new reweighted regularized method for the 3D focusing inversion technique based on Lanczos bidiagonalization method is developed. The inversion results of synthetic data show that the new method is faster than common reweighted regularized conjugate gradient method to produce an acceptable solution for focusing inverse problem. The new developed inversion scheme is also applied for inversion of the gravity data collected over the San Nicolas Cu-Zn orebody in Zacatecas State, Mexico. The inversion results indicate a remarkable correlation with the true structure of the orebody that is achieved from drilling data.

  13. Multilevel fast multipole method based on a potential formulation for 3D electromagnetic scattering problems.

    PubMed

    Fall, Mandiaye; Boutami, Salim; Glière, Alain; Stout, Brian; Hazart, Jerome

    2013-06-01

    A combination of the multilevel fast multipole method (MLFMM) and boundary element method (BEM) can solve large scale photonics problems of arbitrary geometry. Here, MLFMM-BEM algorithm based on a scalar and vector potential formulation, instead of the more conventional electric and magnetic field formulations, is described. The method can deal with multiple lossy or lossless dielectric objects of arbitrary geometry, be they nested, in contact, or dispersed. Several examples are used to demonstrate that this method is able to efficiently handle 3D photonic scatterers involving large numbers of unknowns. Absorption, scattering, and extinction efficiencies of gold nanoparticle spheres, calculated by the MLFMM, are compared with Mie's theory. MLFMM calculations of the bistatic radar cross section (RCS) of a gold sphere near the plasmon resonance and of a silica coated gold sphere are also compared with Mie theory predictions. Finally, the bistatic RCS of a nanoparticle gold-silver heterodimer calculated with MLFMM is compared with unmodified BEM calculations.

  14. A novel window based method for approximating the Hausdorff in 3D range imagery.

    SciTech Connect

    Koch, Mark William

    2004-10-01

    Matching a set of 3D points to another set of 3D points is an important part of any 3D object recognition system. The Hausdorff distance is known for it robustness in the face of obscuration, clutter, and noise. We show how to approximate the 3D Hausdorff fraction with linear time complexity and quadratic space complexity. We empirically demonstrate that the approximation is very good when compared to actual Hausdorff distances.

  15. Analysis of surface cracks at hole by a 3-D weight function method with stresses from finite element method

    NASA Technical Reports Server (NTRS)

    Zhao, W.; Newman, J. C., Jr.; Sutton, M. A.; Shivakumar, K. N.; Wu, X. R.

    1995-01-01

    Parallel with the work in Part-1, stress intensity factors for semi-elliptical surface cracks emanating from a circular hole are determined. The 3-D weight function method with the 3D finite element solutions for the uncracked stress distribution as in Part-1 is used for the analysis. Two different loading conditions, i.e. remote tension and wedge loading, are considered for a wide range in geometrical parameters. Both single and double surface cracks are studied and compared with other solutions available in the literature. Typical crack opening displacements are also provided.

  16. A new multiresolution method applied to the 3D reconstruction of small bodies

    NASA Astrophysics Data System (ADS)

    Capanna, C.; Jorda, L.; Lamy, P. L.; Gesquiere, G.

    2012-12-01

    The knowledge of the three-dimensional (3D) shape of small solar system bodies, such as asteroids and comets, is essential in determining their global physical properties (volume, density, rotational parameters). It also allows performing geomorphological studies of their surface through the characterization of topographic features, such as craters, faults, landslides, grooves, hills, etc.. In the case of small bodies, the shape is often only constrained by images obtained by interplanetary spacecrafts. Several techniques are available to retrieve 3D global shapes from these images. Stereography which relies on control points has been extensively used in the past, most recently to reconstruct the nucleus of comet 9P/Tempel 1 [Thomas (2007)]. The most accurate methods are however photogrammetry and photoclinometry, often used in conjunction with stereography. Stereophotogrammetry (SPG) has been used to reconstruct the shapes of the nucleus of comet 19P/Borrelly [Oberst (2004)] and of the asteroid (21) Lutetia [Preusker (2012)]. Stereophotoclinometry (SPC) has allowed retrieving an accurate shape of the asteroids (25143) Itokawa [Gaskell (2008)] and (2867) Steins [Jorda (2012)]. We present a new photoclinometry method based on the deformation of a 3D triangular mesh [Capanna (2012)] using a multi-resolution scheme which starts from a sphere of 300 facets and yields a shape model with 100; 000 facets. Our strategy is inspired by the "Full Multigrid" method [Botsch (2007)] and consists in going alternatively between two resolutions in order to obtain an optimized shape model at a given resolution before going to the higher resolution. In order to improve the robustness of our method, we use a set of control points obtained by stereography. Our method has been tested on images acquired by the OSIRIS visible camera, aboard the Rosetta spacecraft of the European Space Agency, during the fly-by of asteroid (21) Lutetia in July 2010. We present the corresponding 3D shape

  17. Generic precise augmented reality guiding system and its calibration method based on 3D virtual model.

    PubMed

    Liu, Miao; Yang, Shourui; Wang, Zhangying; Huang, Shujun; Liu, Yue; Niu, Zhenqi; Zhang, Xiaoxuan; Zhu, Jigui; Zhang, Zonghua

    2016-05-30

    Augmented reality system can be applied to provide precise guidance for various kinds of manual works. The adaptability and guiding accuracy of such systems are decided by the computational model and the corresponding calibration method. In this paper, a novel type of augmented reality guiding system and the corresponding designing scheme are proposed. Guided by external positioning equipment, the proposed system can achieve high relative indication accuracy in a large working space. Meanwhile, the proposed system is realized with a digital projector and the general back projection model is derived with geometry relationship between digitized 3D model and the projector in free space. The corresponding calibration method is also designed for the proposed system to obtain the parameters of projector. To validate the proposed back projection model, the coordinate data collected by a 3D positioning equipment is used to calculate and optimize the extrinsic parameters. The final projecting indication accuracy of the system is verified with subpixel pattern projecting technique. PMID:27410124

  18. Spectral triangulation: a 3D method for locating single-walled carbon nanotubes in vivo.

    PubMed

    Lin, Ching-Wei; Bachilo, Sergei M; Vu, Michael; Beckingham, Kathleen M; Bruce Weisman, R

    2016-05-21

    Nanomaterials with luminescence in the short-wave infrared (SWIR) region are of special interest for biological research and medical diagnostics because of favorable tissue transparency and low autofluorescence backgrounds in that region. Single-walled carbon nanotubes (SWCNTs) show well-known sharp SWIR spectral signatures and therefore have potential for noninvasive detection and imaging of cancer tumours, when linked to selective targeting agents such as antibodies. However, such applications face the challenge of sensitively detecting and localizing the source of SWIR emission from inside tissues. A new method, called spectral triangulation, is presented for three dimensional (3D) localization using sparse optical measurements made at the specimen surface. Structurally unsorted SWCNT samples emitting over a range of wavelengths are excited inside tissue phantoms by an LED matrix. The resulting SWIR emission is sampled at points on the surface by a scanning fibre optic probe leading to an InGaAs spectrometer or a spectrally filtered InGaAs avalanche photodiode detector. Because of water absorption, attenuation of the SWCNT fluorescence in tissues is strongly wavelength-dependent. We therefore gauge the SWCNT-probe distance by analysing differential changes in the measured SWCNT emission spectra. SWCNT fluorescence can be clearly detected through at least 20 mm of tissue phantom, and the 3D locations of embedded SWCNT test samples are found with sub-millimeter accuracy at depths up to 10 mm. Our method can also distinguish and locate two embedded SWCNT sources at distinct positions.

  19. Designing patient-specific 3D printed craniofacial implants using a novel topology optimization method.

    PubMed

    Sutradhar, Alok; Park, Jaejong; Carrau, Diana; Nguyen, Tam H; Miller, Michael J; Paulino, Glaucio H

    2016-07-01

    Large craniofacial defects require efficient bone replacements which should not only provide good aesthetics but also possess stable structural function. The proposed work uses a novel multiresolution topology optimization method to achieve the task. Using a compliance minimization objective, patient-specific bone replacement shapes can be designed for different clinical cases that ensure revival of efficient load transfer mechanisms in the mid-face. In this work, four clinical cases are introduced and their respective patient-specific designs are obtained using the proposed method. The optimized designs are then virtually inserted into the defect to visually inspect the viability of the design . Further, once the design is verified by the reconstructive surgeon, prototypes are fabricated using a 3D printer for validation. The robustness of the designs are mechanically tested by subjecting them to a physiological loading condition which mimics the masticatory activity. The full-field strain result through 3D image correlation and the finite element analysis implies that the solution can survive the maximum mastication of 120 lb. Also, the designs have the potential to restore the buttress system and provide the structural integrity. Using the topology optimization framework in designing the bone replacement shapes would deliver surgeons new alternatives for rather complicated mid-face reconstruction. PMID:26660897

  20. Designing patient-specific 3D printed craniofacial implants using a novel topology optimization method.

    PubMed

    Sutradhar, Alok; Park, Jaejong; Carrau, Diana; Nguyen, Tam H; Miller, Michael J; Paulino, Glaucio H

    2016-07-01

    Large craniofacial defects require efficient bone replacements which should not only provide good aesthetics but also possess stable structural function. The proposed work uses a novel multiresolution topology optimization method to achieve the task. Using a compliance minimization objective, patient-specific bone replacement shapes can be designed for different clinical cases that ensure revival of efficient load transfer mechanisms in the mid-face. In this work, four clinical cases are introduced and their respective patient-specific designs are obtained using the proposed method. The optimized designs are then virtually inserted into the defect to visually inspect the viability of the design . Further, once the design is verified by the reconstructive surgeon, prototypes are fabricated using a 3D printer for validation. The robustness of the designs are mechanically tested by subjecting them to a physiological loading condition which mimics the masticatory activity. The full-field strain result through 3D image correlation and the finite element analysis implies that the solution can survive the maximum mastication of 120 lb. Also, the designs have the potential to restore the buttress system and provide the structural integrity. Using the topology optimization framework in designing the bone replacement shapes would deliver surgeons new alternatives for rather complicated mid-face reconstruction.

  1. SDTP: a robust method for interest point detection on 3D range images

    NASA Astrophysics Data System (ADS)

    Wang, Shandong; Gong, Lujin; Zhang, Hui; Zhang, Yongjie; Ren, Haibing; Rhee, Seon-Min; Lee, Hyong-Euk

    2013-12-01

    In fields of intelligent robots and computer vision, the capability to select a few points representing salient structures has always been focused and investigated. In this paper, we present a novel interest point detector for 3D range images, which can be used with good results in applications of surface registration and object recognition. A local shape description around each point in the range image is firstly constructed based on the distribution map of the signed distances to the tangent plane in its local support region. Using this shape description, the interest value is computed for indicating the probability of a point being the interest point. Lastly a Non-Maxima Suppression procedure is performed to select stable interest points on positions that have large surface variation in the vicinity. Our method is robust to noise, occlusion and clutter, which can be seen from the higher repeatability values compared with the state-of-the-art 3D interest point detectors in experiments. In addition, the method can be implemented easily and requires low computation time.

  2. A method of 3D object recognition and localization in a cloud of points

    NASA Astrophysics Data System (ADS)

    Bielicki, Jerzy; Sitnik, Robert

    2013-12-01

    The proposed method given in this article is prepared for analysis of data in the form of cloud of points directly from 3D measurements. It is designed for use in the end-user applications that can directly be integrated with 3D scanning software. The method utilizes locally calculated feature vectors (FVs) in point cloud data. Recognition is based on comparison of the analyzed scene with reference object library. A global descriptor in the form of a set of spatially distributed FVs is created for each reference model. During the detection process, correlation of subsets of reference FVs with FVs calculated in the scene is computed. Features utilized in the algorithm are based on parameters, which qualitatively estimate mean and Gaussian curvatures. Replacement of differentiation with averaging in the curvatures estimation makes the algorithm more resistant to discontinuities and poor quality of the input data. Utilization of the FV subsets allows to detect partially occluded and cluttered objects in the scene, while additional spatial information maintains false positive rate at a reasonably low level.

  3. A coordinate-free method for the analysis of 3D facial change

    NASA Astrophysics Data System (ADS)

    Mao, Zhili; Siebert, Jan Paul; Cockshott, W. Paul; Ayoub, Ashraf Farouk

    2004-05-01

    Euclidean Distance Matrix Analysis (EDMA) is widely held as the most important coordinate-free method by which to analyze landmarks. It has been used extensively in the field of medical anthropometry and has already produced many useful results. Unfortunately this method renders little information regarding the surface on which these points are located and accordingly is inadequate for the 3D analysis of surface anatomy. Here we shall present a new inverse surface flatness metric, the ratio between the Geodesic and the Euclidean inter-landmark distances. Because this metric also only reflects one aspect of three-dimensional shape, i.e. surface flatness, we have combined it with the Euclidean distance to investigate 3D facial change. The goal of this investigation is to be able to analyze three-dimensional facial change in terms of bilateral symmetry as encoded both by surface flatness and by geometric configuration. Our initial study, based on 25 models of surgically managed children (unilateral cleft lip repair) and 40 models of control children at the age of 2 years, indicates that the faces of the surgically managed group were found to be significantly less symmetric than those of the control group in terms of surface flatness, geometric configuration and overall symmetry.

  4. Spectral triangulation: a 3D method for locating single-walled carbon nanotubes in vivo.

    PubMed

    Lin, Ching-Wei; Bachilo, Sergei M; Vu, Michael; Beckingham, Kathleen M; Bruce Weisman, R

    2016-05-21

    Nanomaterials with luminescence in the short-wave infrared (SWIR) region are of special interest for biological research and medical diagnostics because of favorable tissue transparency and low autofluorescence backgrounds in that region. Single-walled carbon nanotubes (SWCNTs) show well-known sharp SWIR spectral signatures and therefore have potential for noninvasive detection and imaging of cancer tumours, when linked to selective targeting agents such as antibodies. However, such applications face the challenge of sensitively detecting and localizing the source of SWIR emission from inside tissues. A new method, called spectral triangulation, is presented for three dimensional (3D) localization using sparse optical measurements made at the specimen surface. Structurally unsorted SWCNT samples emitting over a range of wavelengths are excited inside tissue phantoms by an LED matrix. The resulting SWIR emission is sampled at points on the surface by a scanning fibre optic probe leading to an InGaAs spectrometer or a spectrally filtered InGaAs avalanche photodiode detector. Because of water absorption, attenuation of the SWCNT fluorescence in tissues is strongly wavelength-dependent. We therefore gauge the SWCNT-probe distance by analysing differential changes in the measured SWCNT emission spectra. SWCNT fluorescence can be clearly detected through at least 20 mm of tissue phantom, and the 3D locations of embedded SWCNT test samples are found with sub-millimeter accuracy at depths up to 10 mm. Our method can also distinguish and locate two embedded SWCNT sources at distinct positions. PMID:27140495

  5. Improvement of advanced nodal method used in 3D core design system

    SciTech Connect

    Rauck, S.; Dall'Osso, A.

    2006-07-01

    This paper deals with AREVA NP progress in the modelling of neutronic phenomena, evaluated through 3D determinist core codes and using 2-group diffusion theory. Our report highlights the advantages of taking into account the assembly environment in the process used for the building of the 2-group collapsed neutronic parameters, such as cross sections or discontinuity factors. The interest of the present method, developed in order to account for the impact of the environment on the above mentioned parameters, resides (i) in the very definition of a global correlation between collapsed neutronic data calculated in an infinite medium and those calculated in a 3D-geometry, and (ii) in the use of a re-homogenization method. Using this approach, computations match better with actual measurements on control rod worth. They also present smaller differences on pin by pin power values compared to the ones computed with another code considered as a reference since it relies on multigroup transport theory. (authors)

  6. Advanced methods for 3-D inelastic structural analysis for hot engine structures

    NASA Technical Reports Server (NTRS)

    Chamis, C. C.

    1989-01-01

    Three-dimensional Inelastic Analysis Methods are described. These methods were incorporated into a series of new computer codes embodying a progression of mathematical models (mechanics of materials, specialty finite element, boundary element) for streamlined analysis of hot engine structures such as: (1) combustor liners, (2) turbine blades, and (3) turbine vanes. These models address the effects of high temperatures and thermal/mechanical loadings on the local (stress/strain) and global (displacements, frequencies, amplitudes, buckling) structural behavior of the three respective components. The methods and the three computer codes, referred to as MOMM (Mechanics Of Materials Model), MHOST (MARC-Hot Section Technology), and BEST3D (Boundary Element Stress Technology), have been developed and are briefly described.

  7. Block-Iterative Methods for 3D Constant-Coefficient Stencils on GPUs and Multicore CPUs

    SciTech Connect

    Philip, Bobby; Wang, Zhen; Berrill, Mark A

    2014-06-01

    Block iterative methods are extremely important as smoothers for multigrid methods, as preconditioners for Krylov methods, and as solvers for diagonally dominant linear systems. Developing robust and efficient smoother algorithms suitable for current and evolving GPU and multicore CPU systems is a significant challenge. We address this issue in the case of constant-coefficient stencils arising in the solution of elliptic partial differential equations on structured 3D uniform and adaptively refined block structured grids. Robust, highly parallel implementations of block Jacobi and chaotic block Gauss-Seidel algorithms with exact inversion of the blocks are developed using different parallelization techniques. Experimental results for NVIDIA Fermi/Kepler GPUs and AMD multicore systems are presented.

  8. Medical anatomy segmentation kit: combining 2D and 3D segmentation methods to enhance functionality

    NASA Astrophysics Data System (ADS)

    Tracton, Gregg S.; Chaney, Edward L.; Rosenman, Julian G.; Pizer, Stephen M.

    1994-07-01

    Image segmentation, in particular, defining normal anatomic structures and diseased or malformed tissue from tomographic images, is common in medical applications. Defining tumors or arterio-venous malformation from computed tomography or magnetic resonance images are typical examples. This paper describes a program, Medical Anatomy Segmentation Kit (MASK), whose design acknowledges that no single segmentation technique has proven to be successful or optimal for all object definition tasks associated with medical images. A practical solution is offered through a suite of complementary user-guided segmentation techniques and extensive manual editing functions to reach the final object definition goal. Manual editing can also be used to define objects which are abstract or otherwise not well represented in the image data and so require direct human definition - e.g., a radiotherapy target volume which requires human knowledge and judgement regarding image interpretation and tumor spread characteristics. Results are either in the form of 2D boundaries or regions of labeled pixels or voxels. MASK currently uses thresholding and edge detection to form contours, and 2D or 3D scale-sensitive fill and region algebra to form regions. In addition to these proven techniques, MASK's architecture anticipates clinically practical automatic 2D and 3D segmentation methods of the future.

  9. Women's Preferences for Penis Size: A New Research Method Using Selection among 3D Models

    PubMed Central

    Park, Jaymie; Leung, Shannon

    2015-01-01

    Women’s preferences for penis size may affect men’s comfort with their own bodies and may have implications for sexual health. Studies of women’s penis size preferences typically have relied on their abstract ratings or selecting amongst 2D, flaccid images. This study used haptic stimuli to allow assessment of women’s size recall accuracy for the first time, as well as examine their preferences for erect penis sizes in different relationship contexts. Women (N = 75) selected amongst 33, 3D models. Women recalled model size accurately using this method, although they made more errors with respect to penis length than circumference. Women preferred a penis of slightly larger circumference and length for one-time (length = 6.4 inches/16.3 cm, circumference = 5.0 inches/12.7 cm) versus long-term (length = 6.3 inches/16.0 cm, circumference = 4.8 inches/12.2 cm) sexual partners. These first estimates of erect penis size preferences using 3D models suggest women accurately recall size and prefer penises only slightly larger than average. PMID:26332467

  10. Women's Preferences for Penis Size: A New Research Method Using Selection among 3D Models.

    PubMed

    Prause, Nicole; Park, Jaymie; Leung, Shannon; Miller, Geoffrey

    2015-01-01

    Women's preferences for penis size may affect men's comfort with their own bodies and may have implications for sexual health. Studies of women's penis size preferences typically have relied on their abstract ratings or selecting amongst 2D, flaccid images. This study used haptic stimuli to allow assessment of women's size recall accuracy for the first time, as well as examine their preferences for erect penis sizes in different relationship contexts. Women (N = 75) selected amongst 33, 3D models. Women recalled model size accurately using this method, although they made more errors with respect to penis length than circumference. Women preferred a penis of slightly larger circumference and length for one-time (length = 6.4 inches/16.3 cm, circumference = 5.0 inches/12.7 cm) versus long-term (length = 6.3 inches/16.0 cm, circumference = 4.8 inches/12.2 cm) sexual partners. These first estimates of erect penis size preferences using 3D models suggest women accurately recall size and prefer penises only slightly larger than average.

  11. A simple method for fabricating multi-layer PDMS structures for 3D microfluidic chips.

    PubMed

    Zhang, Mengying; Wu, Jinbo; Wang, Limu; Xiao, Kang; Wen, Weijia

    2010-05-01

    We report a simple methodology to fabricate PDMS multi-layer microfluidic chips. A PDMS slab was surface-treated by trichloro (1H,1H,2H,2H-perfluorooctyl) silane, and acts as a reusable transferring layer. Uniformity of the thickness of the patterned PDMS layer and the well-alignment could be achieved due to the transparency and proper flexibility of this transferring layer. Surface treatment results are confirmed by XPS and contact angle testing, while bonding forces between different layers were measured for better understanding of the transferring process. We have also designed and fabricated a few simple types of 3D PDMS chip, especially one consisting of 6 thin layers (each with thickness of 50 mum), to demonstrate the potential utilization of this technique. 3D fluorescence images were taken by a confocal microscope to illustrate the spatial characters of essential parts. This fabrication method is confirmed to be fast, simple, repeatable, low cost and possible to be mechanized for mass production.

  12. Method for accurate sizing of pulmonary vessels from 3D medical images

    NASA Astrophysics Data System (ADS)

    O'Dell, Walter G.

    2015-03-01

    Detailed characterization of vascular anatomy, in particular the quantification of changes in the distribution of vessel sizes and of vascular pruning, is essential for the diagnosis and management of a variety of pulmonary vascular diseases and for the care of cancer survivors who have received radiation to the thorax. Clinical estimates of vessel radii are typically based on setting a pixel intensity threshold and counting how many "On" pixels are present across the vessel cross-section. A more objective approach introduced recently involves fitting the image with a library of spherical Gaussian filters and utilizing the size of the best matching filter as the estimate of vessel diameter. However, both these approaches have significant accuracy limitations including mis-match between a Gaussian intensity distribution and that of real vessels. Here we introduce and demonstrate a novel approach for accurate vessel sizing using 3D appearance models of a tubular structure along a curvilinear trajectory in 3D space. The vessel branch trajectories are represented with cubic Hermite splines and the tubular branch surfaces represented as a finite element surface mesh. An iterative parameter adjustment scheme is employed to optimally match the appearance models to a patient's chest X-ray computed tomography (CT) scan to generate estimates for branch radii and trajectories with subpixel resolution. The method is demonstrated on pulmonary vasculature in an adult human CT scan, and on 2D simulated test cases.

  13. Traceable profilometry with a 3D nanopositioning unit and zero indicating sensors in compensation method

    NASA Astrophysics Data System (ADS)

    Hoffmann, J.; Weckenmann, A.

    2005-01-01

    Conventional 3D profilers suffer in their traceability and accuracy from nonlinearities of the 1D sensor (optical or tactile) and different measuring principles in the scanning plane compared to the sensor axis. These problems can be overcome using a traceable calibrated 3D positioning device combined with a probing system of negligible measuring range in compensation method. Drawback: reduced dynamics, because of the necessity of accelerated movement of the object to be measured in z-direction for compensating its varying height. Sensors with negligible measuring range to be used for this approach are an optical fixed focus sensor (SIOS GmbH, Germany) and a self-made scanning tunneling sensor without piezo scanner. The integration into the nanopositioning device is made according to a multisensor CMM with fixed and known positions of the sensors with respect to the machine coordinate system giving the possibility of using one sensor's data for navigating the other one. Main applications can be seen in measurement tasks where outstanding accuracy outrivals the need of high measurement speed, e.g. the calibration of step height and pitch standards for profilometry and also for SPM.

  14. Detecting method of subjects' 3D positions and experimental advanced camera control system

    NASA Astrophysics Data System (ADS)

    Kato, Daiichiro; Abe, Kazuo; Ishikawa, Akio; Yamada, Mitsuho; Suzuki, Takahito; Kuwashima, Shigesumi

    1997-04-01

    Steady progress is being made in the development of an intelligent robot camera capable of automatically shooting pictures with a powerful sense of reality or tracking objects whose shooting requires advanced techniques. Currently, only experienced broadcasting cameramen can provide these pictures.TO develop an intelligent robot camera with these abilities, we need to clearly understand how a broadcasting cameraman assesses his shooting situation and how his camera is moved during shooting. We use a real- time analyzer to study a cameraman's work and his gaze movements at studios and during sports broadcasts. This time, we have developed a detecting method of subjects' 3D positions and an experimental camera control system to help us further understand the movements required for an intelligent robot camera. The features are as follows: (1) Two sensor cameras shoot a moving subject and detect colors, producing its 3D coordinates. (2) Capable of driving a camera based on camera movement data obtained by a real-time analyzer. 'Moving shoot' is the name we have given to the object position detection technology on which this system is based. We used it in a soccer game, producing computer graphics showing how players moved. These results will also be reported.

  15. A new method using orthogonal two-frequency grating in online 3D measurement

    NASA Astrophysics Data System (ADS)

    Peng, Kuang; Cao, Yiping; Wu, Yingchun; Lu, Mingteng

    2016-09-01

    In online 3D measurement, a new method using orthogonal two-frequency grating based on Phase Measuring Profilometry(PMP) is proposed. The modulation of the entire measured object is used to match pixels and this proposed method successfully resolves the contradiction of the demand for different frequency fringes between the extraction of the modulation information and the phase unwrapping. The high-frequency fringe is used to catch the better modulation patterns for pixel matching, and the low-frequency fringe is used to calculate the phase distribution and avoid phase unwrapping error. In addition, to extract the better modulation patterns for pixel matching, the flat filtering window replaces the circular filtering window to avoid the spectrum aliasing phenomenon. The simulations and experiments show its feasibility.

  16. Synthesis of ultralow density 3D graphene-CNT foams using a two-step method.

    PubMed

    Vinod, Soumya; Tiwary, Chandra Sekhar; Machado, Leonardo D; Ozden, Sehmus; Vajtai, Robert; Galvao, Douglas S; Ajayan, Pulickel M

    2016-09-21

    Here, we report a highly scalable two-step method to produce graphene foams with ordered carbon nanotube reinforcements. In our approach, we first used solution assembly methods to obtain graphene oxide foam. Next, we employed chemical vapor deposition to simultaneously grow carbon nanotubes and thermally reduce the 3D graphene oxide scaffold. The resulting structure presented increased stiffness, good mechanical stability and oil absorption properties. Molecular dynamics simulations were carried out to further elucidate failure mechanisms and to understand the enhancement of the mechanical properties. The simulations showed that mechanical failure is directly associated with bending of vertical reinforcements, and that, for similar length and contact area, much more stress is required to bend the corresponding reinforcements of carbon nanotubes, thus explaining the experimentally observed enhanced mechanical properties. PMID:27546001

  17. A coordinate transformation method for calculating the 3D light intensity distribution in ICF hohlraum

    NASA Astrophysics Data System (ADS)

    Lin, Zhili; Li, Xiaoyan; Zhao, Kuixia; Chen, Xudong; Chen, Mingyu; Pu, Jixiong

    2016-06-01

    For an inertial confinement fusion (ICF) system, the light intensity distribution in the hohlraum is key to the initial plasma excitation and later laser-plasma interaction process. Based on the concept of coordinate transformation of spatial points and vector, we present a robust method with a detailed procedure that makes the calculation of the three dimensional (3D) light intensity distribution in hohlraum easily. The method is intuitive but powerful enough to solve the complex cases of random number of laser beams with arbitrary polarization states and incidence angles. Its application is exemplified in the Shenguang III Facility (SG-III) that verifies its effectiveness and it is useful for guiding the design of hohlraum structure parameter.

  18. 3D Pharmacophore, hierarchical methods, and 5-HT4 receptor binding data.

    PubMed

    Varin, Thibault; Saettel, Nicolas; Villain, Jonathan; Lesnard, Aurelien; Dauphin, François; Bureau, Ronan; Rault, Sylvain

    2008-10-01

    5-Hydroxytryptamine subtype-4 (5-HT(4)) receptors have stimulated considerable interest amongst scientists and clinicians owing to their importance in neurophysiology and potential as therapeutic targets. A comparative analysis of hierarchical methods applied to data from one thousand 5-HT(4) receptor-ligand binding interactions was carried out. The chemical structures were described as chemical and pharmacophore fingerprints. The definitions of indices, related to the quality of the hierarchies in being able to distinguish between active and inactive compounds, revealed two interesting hierarchies with the Unity (1 active cluster) and pharmacophore fingerprints (4 active clusters). The results of this study also showed the importance of correct choice of metrics as well as the effectiveness of a new alternative of the Ward clustering algorithm named Energy (Minimum E-Distance method). In parallel, the relationship between these classifications and a previously defined 3D 5-HT(4) antagonist pharmacophore was established.

  19. Development and Evaluation of Roadside/Obstacle Detection Method Using 3D Scanned Data Processing

    NASA Astrophysics Data System (ADS)

    Yamamoto, Hiroshi; Ishii, Yoshinori; Yamazaki, Katsuyuki

    In this paper, we have reported the development of a snowblower support system which can safely navigate snowblowers, even during a whiteout, with the combination of a very accurate GPS system, so called RTK-GPS, and a unique and highly accurate map of roadsides and obstacles on roads. Particularly emphasized new techniques in this paper are ways to detect accurate geographical positions of roadsides and obstacles by utilizing and analyzing 3D laser scanned data, whose data has become available in recent days. The experiment has shown that the map created by the methods and RTK-GPS can sufficiently navigate snowblowers, whereby a secure and pleasant social environment can be archived in snow areas of Japan. In addition, proposed methods are expected to be useful for other systems such as a quick development of a highly accurate road map, a safely navigation of a wheeled chair, and so on.

  20. Synthesis of ultralow density 3D graphene-CNT foams using a two-step method.

    PubMed

    Vinod, Soumya; Tiwary, Chandra Sekhar; Machado, Leonardo D; Ozden, Sehmus; Vajtai, Robert; Galvao, Douglas S; Ajayan, Pulickel M

    2016-09-21

    Here, we report a highly scalable two-step method to produce graphene foams with ordered carbon nanotube reinforcements. In our approach, we first used solution assembly methods to obtain graphene oxide foam. Next, we employed chemical vapor deposition to simultaneously grow carbon nanotubes and thermally reduce the 3D graphene oxide scaffold. The resulting structure presented increased stiffness, good mechanical stability and oil absorption properties. Molecular dynamics simulations were carried out to further elucidate failure mechanisms and to understand the enhancement of the mechanical properties. The simulations showed that mechanical failure is directly associated with bending of vertical reinforcements, and that, for similar length and contact area, much more stress is required to bend the corresponding reinforcements of carbon nanotubes, thus explaining the experimentally observed enhanced mechanical properties.

  1. A 3D Frictional Segment-to-Segment Contact Method for Large Deformations and Quadratic Elements

    SciTech Connect

    Puso, M; Laursen, T; Solberg, J

    2004-04-01

    Node-on-segment contact is the most common form of contact used today but has many deficiencies ranging from potential locking to non-smooth behavior with large sliding. Furthermore, node-on-segment approaches are not at all applicable to higher order discretizations (e.g. quadratic elements). In a previous work, [3, 4] we developed a segment-to-segment contact approach for eight node hexahedral elements based on the mortar method that was applicable to large deformation mechanics. The approach proved extremely robust since it eliminated the over-constraint that caused 'locking' and provided smooth force variations in large sliding. Here, we extend this previous approach to treat frictional contact problems. In addition, the method is extended to 3D quadratic tetrahedrals and hexahedrals. The proposed approach is then applied to several challenging frictional contact problems that demonstrate its effectiveness.

  2. 3D Continuum Radiative Transfer. An adaptive grid construction algorithm based on the Monte Carlo method

    NASA Astrophysics Data System (ADS)

    Niccolini, G.; Alcolea, J.

    Solving the radiative transfer problem is a common problematic to may fields in astrophysics. With the increasing angular resolution of spatial or ground-based telescopes (VLTI, HST) but also with the next decade instruments (NGST, ALMA, ...), astrophysical objects reveal and will certainly reveal complex spatial structures. Consequently, it is necessary to develop numerical tools being able to solve the radiative transfer equation in three dimensions in order to model and interpret these observations. I present a 3D radiative transfer program, using a new method for the construction of an adaptive spatial grid, based on the Monte Claro method. With the help of this tools, one can solve the continuum radiative transfer problem (e.g. a dusty medium), computes the temperature structure of the considered medium and obtain the flux of the object (SED and images).

  3. [A rapid prototype fabrication method of dental splint based on 3D simulation and technology].

    PubMed

    Lin, Yanping; Chen, Xiaojun; Zhang, Shilei; Wang, Chengtao

    2006-04-01

    The conventional design and fabrication of the dental splint (in orthognathic surgery) is based on the preoperative planning and model surgery so this process is of low precision and efficiency. In order to solve the problems and be up to the trend of computer-assisted surgery, we have developed a novel method to design and fabricate the dental splint--computer-generated dental splint, which is based on three-dimensional model simulation and rapid prototype technology. After the surgical planning and simulation of 3D model, we can modify the model to be superior in chewing action (functional) and overall facial appearance (aesthetic). Then, through the Boolean operation of the dental splint blank and the maxillofacial bone model the model of dental splint is formed. At last, the dental splint model is fabricated through rapid prototype machine and applied in clinic. The result indicates that, with the use of this method, the surgical precision and efficiency are improved.

  4. A method for 3D reconstruction of coronary arteries using biplane angiography and intravascular ultrasound images.

    PubMed

    Bourantas, Christos V; Kourtis, Iraklis C; Plissiti, Marina E; Fotiadis, Dimitrios I; Katsouras, Christos S; Papafaklis, Michail I; Michalis, Lampros K

    2005-12-01

    The aim of this study is to describe a new method for the three-dimensional reconstruction of coronary arteries and its quantitative validation. Our approach is based on the fusion of the data provided by intravascular ultrasound images (IVUS) and biplane angiographies. A specific segmentation algorithm is used for the detection of the regions of interest in intravascular ultrasound images. A new methodology is also introduced for the accurate extraction of the catheter path. In detail, a cubic B-spline is used for approximating the catheter path in each biplane projection. Each B-spline curve is swept along the normal direction of its X-ray angiographic plane forming a surface. The intersection of the two surfaces is a 3D curve, which represents the reconstructed path. The detected regions of interest in the IVUS images are placed perpendicularly onto the path and their relative axial twist is computed using the sequential triangulation algorithm. Then, an efficient algorithm is applied to estimate the absolute orientation of the first IVUS frame. In order to obtain 3D visualization the commercial package Geomagic Studio 4.0 is used. The performance of the proposed method is assessed using a validation methodology which addresses the separate validation of each step followed for obtaining the coronary reconstruction. The performance of the segmentation algorithm was examined in 80 IVUS images. The reliability of the path extraction method was studied in vitro using a metal wire model and in vivo in a dataset of 11 patients. The performance of the sequential triangulation algorithm was tested in two gutter models and in the coronary arteries (marked with metal clips) of six cadaveric sheep hearts. Finally, the accuracy in the estimation of the first IVUS frame absolute orientation was examined in the same set of cadaveric sheep hearts. The obtained results demonstrate that the proposed reconstruction method is reliable and capable of depicting the morphology of

  5. GPU-accelerated 3D neutron diffusion code based on finite difference method

    SciTech Connect

    Xu, Q.; Yu, G.; Wang, K.

    2012-07-01

    Finite difference method, as a traditional numerical solution to neutron diffusion equation, although considered simpler and more precise than the coarse mesh nodal methods, has a bottle neck to be widely applied caused by the huge memory and unendurable computation time it requires. In recent years, the concept of General-Purpose computation on GPUs has provided us with a powerful computational engine for scientific research. In this study, a GPU-Accelerated multi-group 3D neutron diffusion code based on finite difference method was developed. First, a clean-sheet neutron diffusion code (3DFD-CPU) was written in C++ on the CPU architecture, and later ported to GPUs under NVIDIA's CUDA platform (3DFD-GPU). The IAEA 3D PWR benchmark problem was calculated in the numerical test, where three different codes, including the original CPU-based sequential code, the HYPRE (High Performance Pre-conditioners)-based diffusion code and CITATION, were used as counterpoints to test the efficiency and accuracy of the GPU-based program. The results demonstrate both high efficiency and adequate accuracy of the GPU implementation for neutron diffusion equation. A speedup factor of about 46 times was obtained, using NVIDIA's Geforce GTX470 GPU card against a 2.50 GHz Intel Quad Q9300 CPU processor. Compared with the HYPRE-based code performing in parallel on an 8-core tower server, the speedup of about 2 still could be observed. More encouragingly, without any mathematical acceleration technology, the GPU implementation ran about 5 times faster than CITATION which was speeded up by using the SOR method and Chebyshev extrapolation technique. (authors)

  6. Testing 3D landform quantification methods with synthetic drumlins in a real digital elevation model

    NASA Astrophysics Data System (ADS)

    Hillier, John K.; Smith, Mike J.

    2012-06-01

    Metrics such as height and volume quantifying the 3D morphology of landforms are important observations that reflect and constrain Earth surface processes. Errors in such measurements are, however, poorly understood. A novel approach, using statistically valid ‘synthetic' landscapes to quantify the errors is presented. The utility of the approach is illustrated using a case study of 184 drumlins observed in Scotland as quantified from a Digital Elevation Model (DEM) by the ‘cookie cutter' extraction method. To create the synthetic DEMs, observed drumlins were removed from the measured DEM and replaced by elongate 3D Gaussian ones of equivalent dimensions positioned randomly with respect to the ‘noise' (e.g. trees) and regional trends (e.g. hills) that cause the errors. Then, errors in the cookie cutter extraction method were investigated by using it to quantify these ‘synthetic' drumlins, whose location and size is known. Thus, the approach determines which key metrics are recovered accurately. For example, mean height of 6.8 m is recovered poorly at 12.5 ± 0.6 (2σ) m, but mean volume is recovered correctly. Additionally, quantification methods can be compared: A variant on the cookie cutter using an un-tensioned spline induced about twice (× 1.79) as much error. Finally, a previously reportedly statistically significant (p = 0.007) difference in mean volume between sub-populations of different ages, which may reflect formational processes, is demonstrated to be only 30-50% likely to exist in reality. Critically, the synthetic DEMs are demonstrated to realistically model parameter recovery, primarily because they are still almost entirely the original landscape. Results are insensitive to the exact method used to create the synthetic DEMs, and the approach could be readily adapted to assess a variety of landforms (e.g. craters, dunes and volcanoes).

  7. Second order Method for Solving 3D Elasticity Equations with Complex Interfaces

    PubMed Central

    Wang, Bao; Xia, Kelin; Wei, Guo-Wei

    2015-01-01

    Elastic materials are ubiquitous in nature and indispensable components in man-made devices and equipments. When a device or equipment involves composite or multiple elastic materials, elasticity interface problems come into play. The solution of three dimensional (3D) elasticity interface problems is significantly more difficult than that of elliptic counterparts due to the coupled vector components and cross derivatives in the governing elasticity equation. This work introduces the matched interface and boundary (MIB) method for solving 3D elasticity interface problems. The proposed MIB elasticity interface scheme utilizes fictitious values on irregular grid points near the material interface to replace function values in the discretization so that the elasticity equation can be discretized using the standard finite difference schemes as if there were no material interface. The interface jump conditions are rigorously enforced on the intersecting points between the interface and the mesh lines. Such an enforcement determines the fictitious values. A number of new techniques has been developed to construct efficient MIB elasticity interface schemes for dealing with cross derivative in coupled governing equations. The proposed method is extensively validated over both weak and strong discontinuity of the solution, both piecewise constant and position-dependent material parameters, both smooth and nonsmooth interface geometries, and both small and large contrasts in the Poisson’s ratio and shear modulus across the interface. Numerical experiments indicate that the present MIB method is of second order convergence in both L∞ and L2 error norms for handling arbitrarily complex interfaces, including biomolecular surfaces. To our best knowledge, this is the first elasticity interface method that is able to deliver the second convergence for the molecular surfaces of proteins.. PMID:25914422

  8. Improved time-space method for 3-D heat transfer problems including global warming

    SciTech Connect

    Saitoh, T.S.; Wakashima, Shinichiro

    1999-07-01

    In this paper, the Time-Space Method (TSM) which has been proposed for solving general heat transfer and fluid flow problems was improved in order to cover global and urban warming. The TSM is effective in almost all-transient heat transfer and fluid flow problems, and has been already applied to the 2-D melting problems (or moving boundary problems). The computer running time will be reduced to only 1/100th--1/1000th of the existing schemes for 2-D and 3-D problems. However, in order to apply to much larger-scale problems, for example, global warming, urban warming and general ocean circulation, the SOR method (or other iterative methods) in four dimensions is somewhat tedious and provokingly slow. Motivated by the above situation, the authors improved the speed of iteration of the previous TSM by introducing the following ideas: (1) Timewise chopping: Time domain is chopped into small peaches to save memory requirement; (2) Adaptive iteration: Converged region is eliminated for further iteration; (3) Internal selective iteration: Equation with slow iteration speed in iterative procedure is selectively iterated to accelerate entire convergence; and (4) False transient integration: False transient term is added to the Poisson-type equation and the relevant solution is regarded as a parabolic equation. By adopting the above improvements, the higher-order finite different schemes and the hybrid mesh, the computer running time for the TSM is reduced to some 1/4600th of the conventional explicit method for a typical 3-D natural convection problem in a closed cavity. The proposed TSM will be more efficacious for large-scale environmental problems, such as global warming, urban warming and general ocean circulation, in which a tremendous computing time would be required.

  9. First 3D thermal mapping of an active volcano using an advanced photogrammetric method

    NASA Astrophysics Data System (ADS)

    Antoine, Raphael; Baratoux, David; Lacogne, Julien; Lopez, Teodolina; Fauchard, Cyrille; Bretar, Frédéric; Arab-Sedze, Mélanie; Staudacher, Thomas; Jacquemoud, Stéphane; Pierrot-Deseilligny, Marc

    2014-05-01

    Thermal infrared data obtained in the [7-14 microns] spectral range are usually used in many Earth Science disciplines. These studies are exclusively based on the analysis of 2D information. In this case, a quantitative analysis of the surface energy budget remains limited, as it may be difficult to estimate the radiative contribution of the topography, the thermal influence of winds on the surface or potential imprints of subsurface flows on the soil without any precise DEM. The draping of a thermal image on a recent DEM is a common method to obtain a 3D thermal map of a surface. However, this method has many disadvantages i) errors can be significant in the orientation process of the thermal images, due to the lack of tie points between the images and the DEM; ii) the use of a recent DEM implies the use of another remote sensing technique to quantify the topography; iii) finally, the characterization of the evolution of a surface requires the simultaneous acquisition of thermal data and topographic information, which may be expensive in most cases. The stereophotogrammetry method allows to reconstitute the relief of an object from photos taken from different positions. Recently, substantial progress have been realized in the generation of high spatial resolution topographic surfaces using stereophotogrammetry. However, the presence of shadows, homogeneous textures and/or weak contrasts in the visible spectrum (e.g., flowing lavas, uniform lithologies) may prevent from the use of such method, because of the difficulties to find tie points on each image. Such situations are more favorable in the thermal infrared spectrum, as any variation in the thermal properties or geometric orientation of the surfaces may induce temperature contrasts that are detectable with a thermal camera. This system, usually functioning with a array sensor (Focal Plane Array) and an optical device, have geometric characteristics that are similar to digital cameras. Thus, it may be possible

  10. Dosimetry in radiotherapy using a-Si EPIDs: Systems, methods, and applications focusing on 3D patient dose estimation

    NASA Astrophysics Data System (ADS)

    McCurdy, B. M. C.

    2013-06-01

    An overview is provided of the use of amorphous silicon electronic portal imaging devices (EPIDs) for dosimetric purposes in radiation therapy, focusing on 3D patient dose estimation. EPIDs were originally developed to provide on-treatment radiological imaging to assist with patient setup, but there has also been a natural interest in using them as dosimeters since they use the megavoltage therapy beam to form images. The current generation of clinically available EPID technology, amorphous-silicon (a-Si) flat panel imagers, possess many characteristics that make them much better suited to dosimetric applications than earlier EPID technologies. Features such as linearity with dose/dose rate, high spatial resolution, realtime capability, minimal optical glare, and digital operation combine with the convenience of a compact, retractable detector system directly mounted on the linear accelerator to provide a system that is well-suited to dosimetric applications. This review will discuss clinically available a-Si EPID systems, highlighting dosimetric characteristics and remaining limitations. Methods for using EPIDs in dosimetry applications will be discussed. Dosimetric applications using a-Si EPIDs to estimate three-dimensional dose in the patient during treatment will be overviewed. Clinics throughout the world are implementing increasingly complex treatments such as dynamic intensity modulated radiation therapy and volumetric modulated arc therapy, as well as specialized treatment techniques using large doses per fraction and short treatment courses (ie. hypofractionation and stereotactic radiosurgery). These factors drive the continued strong interest in using EPIDs as dosimeters for patient treatment verification.

  11. Training toward Advanced 3D Seismic Methods for CO2 Monitoring, Verification, and Accounting

    SciTech Connect

    Christopher Liner

    2012-05-31

    The objective of our work is graduate and undergraduate student training related to improved 3D seismic technology that addresses key challenges related to monitoring movement and containment of CO{sub 2}, specifically better quantification and sensitivity for mapping of caprock integrity, fractures, and other potential leakage pathways. We utilize data and results developed through previous DOE-funded CO{sub 2} characterization project (DE-FG26-06NT42734) at the Dickman Field of Ness County, KS. Dickman is a type locality for the geology that will be encountered for CO{sub 2} sequestration projects from northern Oklahoma across the U.S. midcontinent to Indiana and Illinois. Since its discovery in 1962, the Dickman Field has produced about 1.7 million barrels of oil from porous Mississippian carbonates with a small structural closure at about 4400 ft drilling depth. Project data includes 3.3 square miles of 3D seismic data, 142 wells, with log, some core, and oil/water production data available. Only two wells penetrate the deep saline aquifer. In a previous DOE-funded project, geological and seismic data were integrated to create a geological property model and a flow simulation grid. We believe that sequestration of CO{sub 2} will largely occur in areas of relatively flat geology and simple near surface, similar to Dickman. The challenge is not complex geology, but development of improved, lower-cost methods for detecting natural fractures and subtle faults. Our project used numerical simulation to test methods of gathering multicomponent, full azimuth data ideal for this purpose. Our specific objectives were to apply advanced seismic methods to aide in quantifying reservoir properties and lateral continuity of CO{sub 2} sequestration targets. The purpose of the current project is graduate and undergraduate student training related to improved 3D seismic technology that addresses key challenges related to monitoring movement and containment of CO{sub 2

  12. A 3D discontinuous Galerkin finite-element method for teleseismic modelling.

    NASA Astrophysics Data System (ADS)

    monteiller, vadim; Beller, Stephen; Nolet, Guust; Operto, Stephane; Virieux, Jean

    2014-05-01

    The massive development of dense seismic arrays and the rapide increase in computing capacity allow today to consider application of full waveform inversion of teleseismic data for high-resolution lithospheric imaging. We present an hybrid numerical method that allows for the modelling of short period telesismic waves in 3D lithospheric target with the discontinuous Galerkin finite elements method, opennig the possibility to perform waveform inversion of seismograms recorded by dense regional broadband arrays. In order to reduce the computational cost of the forward-problem, we developed a method that relies on multi-core parallel computing and computational-domain reduction. We defined two nested levels for parallelism based on MPI library, which are managed by two MPI communicators. Firstly, we use a domain partitionning strategy, assigning one subdomain to one cpu and, secondly we distribute telesismic sources on different copies of the partitioned domain. However, despite the supercomputer ability, the forward-problem remains expensive for telesismic configuration especially when 3D numerical methods are considered. In order to perform the forward problem in a reasonable amount of time, we reduce the computational domain in which full waveform modelling is performed. We defined a 3D regional domain located below the seismological network that is embeded in a background homogeneous or axisymetric model, in which the seismic wavefield can be computed efficiently. The background wavefield is used to compute the full wavefield in the 3D regional domain using the so-called total-field/scattered-field technique (Alterman & Karal (1968),Taflove & Hagness (2005)), which relies on the decomposition of the wavefield into a background and a scattered wavefields. The computational domain is subdivided intro three subdomains: an outer domain formed by the perfectly-mathed absorbing layers, an intermediate zone in which only the outgoing wavefield scattered by the

  13. Computerized method for automated measurement of thickness of cerebral cortex for 3-D MR images

    NASA Astrophysics Data System (ADS)

    Arimura, Hidetaka; Yoshiura, Takashi; Kumazawa, Seiji; Koga, Hiroshi; Sakai, Shuji; Mihara, Futoshi; Honda, Hiroshi; Ohki, Masafumi; Toyofuku, Fukai; Higashida, Yoshiharu

    2006-03-01

    Alzheimer's disease (AD) is associated with the degeneration of cerebral cortex, which results in focal volume change or thinning in the cerebral cortex in magnetic resonance imaging (MRI). Therefore, the measurement of the cortical thickness is important for detection of the atrophy related to AD. Our purpose was to develop a computerized method for automated measurement of the cortical thickness for three-dimensional (3-D) MRI. The cortical thickness was measured with normal vectors from white matter surface to cortical gray matter surface on a voxel-by-voxel basis. First, a head region was segmented by use of an automatic thresholding technique, and then the head region was separated into the cranium region and brain region by means of a multiple gray level thresholding with monitoring the ratio of the first maximum volume to the second one. Next, a fine white matter region was determined based on a level set method as a seed region of the rough white matter region extracted from the brain region. Finally, the cortical thickness was measured by extending normal vectors from the white matter surface to gray matter surface (brain surface) on a voxel-by-voxel basis. We applied the computerized method to high-resolution 3-D T1-weighted images of the whole brains from 7 clinically diagnosed AD patients and 8 healthy subjects. The average cortical thicknesses in the upper slices for AD patients were thinner than those for non-AD subjects, whereas the average cortical thicknesses in the lower slices for most AD patients were slightly thinner. Our preliminary results suggest that the MRI-based computerized measurement of gray matter atrophy is promising for detecting AD.

  14. The `L' Array, a method to model 3D Electrical Resistivity Tomography (ERT) data

    NASA Astrophysics Data System (ADS)

    Chavez Segura, R. E.; Chavez-Hernandez, G.; Delgado, C.; Tejero-Andrade, A.

    2010-12-01

    The electrical resistivity tomography (ERT) is a method designed to calculate the distribution of apparent electrical resistivities in the subsoil by means of a great number of observations with the aim of determining an electrical image displaying the distribution of true resistivities in the subsoil. Such process can be carried out to define 2D or 3D models of the subsurface. For a 3D ERT, usually, the electrodes are placed in a squared grid keeping the distance between adjacent electrodes constant in the x and y directions. Another design employed, consists of a series of parallel lines whose space inter-lines must be smaller or equal to four times the electrode separation. The most common electrode arrays frequently employed for this type of studies are the pole-pole, pole-dipole and dipole-dipole. Unfortunately, ERT surface sampling schemes are limited by physical conditions or obstacles, like buildings, highly populated urban zones, and geologic/topographic features, where the lines of electrodes cannot be set. However, it is always necessary to characterize the subsoil beneath such anthropogenic or natural features. The ‘L’ shaped array has the main purpose to overcome such difficulties by surrounding the study area with a square of electrode lines. The measurements are obtained by switching automatically current and potential electrodes from one line to the other. Each observation adds a level of information, from one profile to the other. Once the total levels of data are completed, the opposite ‘L’ array can be measured following the same process. The complete square is computed after the parallel profiles are observed as well. At the end, the computed resistivities are combined to form a 3D matrix of observations. Such set of data can be inverted to obtain the true resistivity distribution at depth in the form of a working cube, which can be interpreted. The method was tested with theoretical models, which included a set of two resistive cubes

  15. A Kosloff/Basal method, 3D migration program implemented on the CYBER 205 supercomputer

    NASA Technical Reports Server (NTRS)

    Pyle, L. D.; Wheat, S. R.

    1984-01-01

    Conventional finite difference migration has relied on approximations to the acoustic wave equation which allow energy to propagate only downwards. Although generally reliable, such approaches usually do not yield an accurate migration for geological structures with strong lateral velocity variations or with steeply dipping reflectors. An earlier study by D. Kosloff and E. Baysal (Migration with the Full Acoustic Wave Equation) examined an alternative approach based on the full acoustic wave equation. The 2D, Fourier type algorithm which was developed was tested by Kosloff and Baysal against synthetic data and against physical model data. The results indicated that such a scheme gives accurate migration for complicated structures. This paper describes the development and testing of a vectorized, 3D migration program for the CYBER 205 using the Kosloff/Baysal method. The program can accept as many as 65,536 zero offset (stacked) traces.

  16. Spectral triangulation: a 3D method for locating single-walled carbon nanotubes in vivo

    NASA Astrophysics Data System (ADS)

    Lin, Ching-Wei; Bachilo, Sergei M.; Vu, Michael; Beckingham, Kathleen M.; Bruce Weisman, R.

    2016-05-01

    Nanomaterials with luminescence in the short-wave infrared (SWIR) region are of special interest for biological research and medical diagnostics because of favorable tissue transparency and low autofluorescence backgrounds in that region. Single-walled carbon nanotubes (SWCNTs) show well-known sharp SWIR spectral signatures and therefore have potential for noninvasive detection and imaging of cancer tumours, when linked to selective targeting agents such as antibodies. However, such applications face the challenge of sensitively detecting and localizing the source of SWIR emission from inside tissues. A new method, called spectral triangulation, is presented for three dimensional (3D) localization using sparse optical measurements made at the specimen surface. Structurally unsorted SWCNT samples emitting over a range of wavelengths are excited inside tissue phantoms by an LED matrix. The resulting SWIR emission is sampled at points on the surface by a scanning fibre optic probe leading to an InGaAs spectrometer or a spectrally filtered InGaAs avalanche photodiode detector. Because of water absorption, attenuation of the SWCNT fluorescence in tissues is strongly wavelength-dependent. We therefore gauge the SWCNT-probe distance by analysing differential changes in the measured SWCNT emission spectra. SWCNT fluorescence can be clearly detected through at least 20 mm of tissue phantom, and the 3D locations of embedded SWCNT test samples are found with sub-millimeter accuracy at depths up to 10 mm. Our method can also distinguish and locate two embedded SWCNT sources at distinct positions.Nanomaterials with luminescence in the short-wave infrared (SWIR) region are of special interest for biological research and medical diagnostics because of favorable tissue transparency and low autofluorescence backgrounds in that region. Single-walled carbon nanotubes (SWCNTs) show well-known sharp SWIR spectral signatures and therefore have potential for noninvasive detection and

  17. 3D Heart: a new visual training method for electrocardiographic analysis.

    PubMed

    Olson, Charles W; Lange, David; Chan, Jack-Kang; Olson, Kim E; Albano, Alfred; Wagner, Galen S; Selvester, Ronald H S

    2007-01-01

    This new training method is based on developing a sound understanding of the sequence in which electrical excitation spreads through both the normal and the infarcted myocardium. The student is made aware of the cardiac electrical performance through a series of 3-dimensional pictures during the excitation process. The electrocardiogram 3D Heart 3-dimensional program contains a variety of different activation simulations. Currently, this program enables the user to view the activation simulation for all of the following pathology examples: normal activation; large, medium, and small anterior myocardial infarction (MI); large, medium, and small posterolateral MI; large, medium, and small inferior MI. Simulations relating to other cardiac abnormalities, such as bundle branch block and left ventricular hypertrophy fasicular block, are being developed as part of a National Institute of Health (NIH) Phase 1 Small Business Innovation Research (SBIR) program. PMID:17604044

  18. The Wavelet Element Method. Part 2; Realization and Additional Features in 2D and 3D

    NASA Technical Reports Server (NTRS)

    Canuto, Claudio; Tabacco, Anita; Urban, Karsten

    1998-01-01

    The Wavelet Element Method (WEM) provides a construction of multiresolution systems and biorthogonal wavelets on fairly general domains. These are split into subdomains that are mapped to a single reference hypercube. Tensor products of scaling functions and wavelets defined on the unit interval are used on the reference domain. By introducing appropriate matching conditions across the interelement boundaries, a globally continuous biorthogonal wavelet basis on the general domain is obtained. This construction does not uniquely define the basis functions but rather leaves some freedom for fulfilling additional features. In this paper we detail the general construction principle of the WEM to the 1D, 2D and 3D cases. We address additional features such as symmetry, vanishing moments and minimal support of the wavelet functions in each particular dimension. The construction is illustrated by using biorthogonal spline wavelets on the interval.

  19. On 3-D inelastic analysis methods for hot section components. Volume 1: Special finite element models

    NASA Technical Reports Server (NTRS)

    Nakazawa, S.

    1987-01-01

    This Annual Status Report presents the results of work performed during the third year of the 3-D Inelastic Analysis Methods for Hot Section Components program (NASA Contract NAS3-23697). The objective of the program is to produce a series of new computer codes that permit more accurate and efficient three-dimensional analysis of selected hot section components, i.e., combustor liners, turbine blades, and turbine vanes. The computer codes embody a progression of mathematical models and are streamlined to take advantage of geometrical features, loading conditions, and forms of material response that distinguish each group of selected components. This report is presented in two volumes. Volume 1 describes effort performed under Task 4B, Special Finite Element Special Function Models, while Volume 2 concentrates on Task 4C, Advanced Special Functions Models.

  20. Advancing New 3D Seismic Interpretation Methods for Exploration and Development of Fractured Tight Gas Reservoirs

    SciTech Connect

    James Reeves

    2005-01-31

    In a study funded by the U.S. Department of Energy and GeoSpectrum, Inc., new P-wave 3D seismic interpretation methods to characterize fractured gas reservoirs are developed. A data driven exploratory approach is used to determine empirical relationships for reservoir properties. Fractures are predicted using seismic lineament mapping through a series of horizon and time slices in the reservoir zone. A seismic lineament is a linear feature seen in a slice through the seismic volume that has negligible vertical offset. We interpret that in regions of high seismic lineament density there is a greater likelihood of fractured reservoir. Seismic AVO attributes are developed to map brittle reservoir rock (low clay) and gas content. Brittle rocks are interpreted to be more fractured when seismic lineaments are present. The most important attribute developed in this study is the gas sensitive phase gradient (a new AVO attribute), as reservoir fractures may provide a plumbing system for both water and gas. Success is obtained when economic gas and oil discoveries are found. In a gas field previously plagued with poor drilling results, four new wells were spotted using the new methodology and recently drilled. The wells have estimated best of 12-months production indicators of 2106, 1652, 941, and 227 MCFGPD. The latter well was drilled in a region of swarming seismic lineaments but has poor gas sensitive phase gradient (AVO) and clay volume attributes. GeoSpectrum advised the unit operators that this location did not appear to have significant Lower Dakota gas before the well was drilled. The other three wells are considered good wells in this part of the basin and among the best wells in the area. These new drilling results have nearly doubled the gas production and the value of the field. The interpretation method is ready for commercialization and gas exploration and development. The new technology is adaptable to conventional lower cost 3D seismic surveys.

  1. Integration of Petrophysical Methods and 3D Printing Technology to Replicate Reservoir Pore Systems

    NASA Astrophysics Data System (ADS)

    Ishutov, S.; Hasiuk, F.; Gray, J.; Harding, C.

    2014-12-01

    Pore-scale imaging and modeling are becoming routine geoscience techniques of reservoir analysis and simulation in oil and gas industry. Three-dimensional printing may facilitate the transformation of pore-space imagery into rock models, which can be compared to traditional laboratory methods and literature data. Although current methodologies for rapid rock modeling and printing obscure many details of grain geometry, computed tomography data is one route to refine pore networks and experimentally test hypotheses related to rock properties, such as porosity and permeability. This study uses three-dimensional printing as a novel way of interacting with x-ray computed tomography data from reservoir core plugs based on digital modeling of pore systems in coarse-grained sandstones and limestones. The advantages of using artificial rocks as a proxy are to better understand the contributions of pore system characteristics at various scales to petrophysical properties in oil and gas reservoirs. Pore radii of reservoir sandstones used in this study range from 1 to 100s of microns, whereas the pore radii for limestones vary from 0.01 to 10s of microns. The resolution of computed tomography imaging is ~10 microns; the resolution of 3D digital printing used in the study varies from 2.5 to 300 microns. For this technology to be useful, loss of pore network information must be minimized in the course of data acquisition, modeling, and production as well as verified against core-scale measurements. The ultimate goal of this study is to develop a reservoir rock "photocopier" that couples 3D scanning and modeling with 3D printing to reproduce a) petrophyscially accurate copies of reservoir pore systems and b) digitally modified pore systems for testing hypotheses about reservoir flow. By allowing us to build porous media with known properties (porosity, permeability, surface area), technology will also advance our understanding of the tools used to measure these quantities (e

  2. A higher order panel method for linearized supersonic flow

    NASA Technical Reports Server (NTRS)

    Ehlers, F. E.; Epton, M. A.; Johnson, F. T.; Magnus, A. E.; Rubbert, P. E.

    1979-01-01

    The basic integral equations of linearized supersonic theory for an advanced supersonic panel method are derived. Methods using only linear varying source strength over each panel or only quadratic doublet strength over each panel gave good agreement with analytic solutions over cones and zero thickness cambered wings. For three dimensional bodies and wings of general shape, combined source and doublet panels with interior boundary conditions to eliminate the internal perturbations lead to a stable method providing good agreement experiment. A panel system with all edges contiguous resulted from dividing the basic four point non-planar panel into eight triangular subpanels, and the doublet strength was made continuous at all edges by a quadratic distribution over each subpanel. Superinclined panels were developed and tested on s simple nacelle and on an airplane model having engine inlets, with excellent results.

  3. Novel, fast and efficient image-based 3D modeling method and its application in fracture risk evaluation

    PubMed Central

    LI, DAN; XIAO, ZHITAO; WANG, GANG; ZHAO, GUOQING

    2014-01-01

    Constructing models based on computed tomography images for finite element analysis (FEA) is challenging under pathological conditions. In the present study, an innovative method was introduced that uses Siemens syngo® 3D software for processing models and Mimics software for further modeling. Compared with the slice-by-slice traditional manual margin discrimination, the new 3D modeling method utilizes automatic tissue margin determination and 3D cutting using syngo software. The modeling morphologies of the two methods were similar; however, the 3D modeling method was 8–10 times faster than the traditional method, particularly in cases with osteoporosis and osteophytes. A comparative FEA study of the lumbar spines of young and elderly patients, on the basis of the models constructed by the 3D modeling method, showed peak stress elevation in the vertebrae of elderly patients. Stress distribution was homogeneous in the entire vertebrae of young individuals. By contrast, stress redistribution in the vertebrae of the elderly was concentrated in the anterior cortex of the vertebrae, which explains the high fracture risk mechanism in elderly individuals. In summary, the new 3D modeling method is highly efficient, accurate and faster than traditional methods. The method also allows reliable FEA in pathological cases with osteoporosis and osteophytes. PMID:24926348

  4. Formation of 3D structures in a volumetric photocurable material via a holographic method

    NASA Astrophysics Data System (ADS)

    Vorzobova, N. D.; Bulgakova, V. G.; Veselov, V. O.

    2015-12-01

    The principle of forming 3D polymer structures is considered, based on the display of the 3D intensity distribution of radiation formed by a hologram in the bulk of a photocurable material. The conditions are determined for limiting the cure depth and reproducing the projected wavefront configuration.

  5. Analysis of hybrid dielectric-plasmonic slot waveguide structures with 3D Fourier Modal Methods

    NASA Astrophysics Data System (ADS)

    Ctyroky, J.; Kwiecien, P.; Richter, I.

    2013-03-01

    Recently, plasmonic waveguides have been intensively studied as promising basic building blocks for the construction of extremely compact photonic devices with subwavelength characteristic dimensions. A number of different types of plasmonic waveguide structures have been recently proposed, theoretically analyzed, and their properties experimentally verified. The fundamental trade-off in the design of plasmonic waveguides for potential application in information technologies lies in the contradiction between their mode field confinement and propagation loss: the higher confinement, the higher loss, and vice versa. Various definitions of figures of merit of plasmonic waveguides have been also introduced for the characterization of their properties with a single quantity. In this contribution, we theoretically analyze one specific type of a plasmonic waveguide - the hybrid dielectric-loaded plasmonic waveguide, or - as we call it in this paper - the hybrid dielectric-plasmonic slot waveguide, which exhibits very strong field confinement combined with acceptable losses allowing their application in some integrated plasmonic devices. In contrast to the structures analyzed previously, our structure makes use of a single low-index dielectric only. We first define the effective area of this waveguide type, and using waveguide parameters close to the optimum we analyze several waveguide devices as directional couplers, multimode interference couplers (MMI), and the Mach-Zehnder interferometer based on the MMI couplers. For the full-vector 3D analysis of these structures, we use modelling tools developed in-house on the basis of the Fourier Modal Method (FMM). Our results thus serve to a dual purpose: they confirm that (i) these structures represent promising building blocks of plasmonic devices, and (ii) our FMM codes are capable of efficient 3D vector modelling of plasmonic waveguide devices.

  6. Curvilinear Immersed Boundary Method for Simulating Fluid Structure Interaction with Complex 3D Rigid Bodies

    PubMed Central

    Borazjani, Iman; Ge, Liang; Sotiropoulos, Fotis

    2010-01-01

    The sharp-interface CURVIB approach of Ge and Sotiropoulos [L. Ge, F. Sotiropoulos, A Numerical Method for Solving the 3D Unsteady Incompressible Navier-Stokes Equations in Curvilinear Domains with Complex Immersed Boundaries, Journal of Computational Physics 225 (2007) 1782–1809] is extended to simulate fluid structure interaction (FSI) problems involving complex 3D rigid bodies undergoing large structural displacements. The FSI solver adopts the partitioned FSI solution approach and both loose and strong coupling strategies are implemented. The interfaces between immersed bodies and the fluid are discretized with a Lagrangian grid and tracked with an explicit front-tracking approach. An efficient ray-tracing algorithm is developed to quickly identify the relationship between the background grid and the moving bodies. Numerical experiments are carried out for two FSI problems: vortex induced vibration of elastically mounted cylinders and flow through a bileaflet mechanical heart valve at physiologic conditions. For both cases the computed results are in excellent agreement with benchmark simulations and experimental measurements. The numerical experiments suggest that both the properties of the structure (mass, geometry) and the local flow conditions can play an important role in determining the stability of the FSI algorithm. Under certain conditions unconditionally unstable iteration schemes result even when strong coupling FSI is employed. For such cases, however, combining the strong-coupling iteration with under-relaxation in conjunction with the Aitken’s acceleration technique is shown to effectively resolve the stability problems. A theoretical analysis is presented to explain the findings of the numerical experiments. It is shown that the ratio of the added mass to the mass of the structure as well as the sign of the local time rate of change of the force or moment imparted on the structure by the fluid determine the stability and convergence of the

  7. 3D CAD model retrieval method based on hierarchical multi-features

    NASA Astrophysics Data System (ADS)

    An, Ran; Wang, Qingwen

    2015-12-01

    The classical "Shape Distribution D2" algorithm takes the distance between two random points on a surface of CAD model as statistical features, and based on that it generates a feature vector to calculate the dissimilarity and achieve the retrieval goal. This algorithm has a simple principle, high computational efficiency and can get a better retrieval results for the simple shape models. Based on the analysis of D2 algorithm's shape distribution curve, this paper enhances the algorithm's descriptive ability for a model's overall shape through the statistics of the angle between two random points' normal vectors, especially for the distinctions between the model's plane features and curved surface features; meanwhile, introduce the ratio that a line between two random points cut off by the model's surface to enhance the algorithm's descriptive ability for a model's detailed features; finally, integrating the two shape describing methods with the original D2 algorithm, this paper proposes a new method based the hierarchical multi-features. Experimental results showed that this method has bigger improvements and could get a better retrieval results compared with the traditional 3D CAD model retrieval method.

  8. 3D magnetospheric parallel hybrid multi-grid method applied to planet-plasma interactions

    NASA Astrophysics Data System (ADS)

    Leclercq, L.; Modolo, R.; Leblanc, F.; Hess, S.; Mancini, M.

    2016-03-01

    We present a new method to exploit multiple refinement levels within a 3D parallel hybrid model, developed to study planet-plasma interactions. This model is based on the hybrid formalism: ions are kinetically treated whereas electrons are considered as a inertia-less fluid. Generally, ions are represented by numerical particles whose size equals the volume of the cells. Particles that leave a coarse grid subsequently entering a refined region are split into particles whose volume corresponds to the volume of the refined cells. The number of refined particles created from a coarse particle depends on the grid refinement rate. In order to conserve velocity distribution functions and to avoid calculations of average velocities, particles are not coalesced. Moreover, to ensure the constancy of particles' shape function sizes, the hybrid method is adapted to allow refined particles to move within a coarse region. Another innovation of this approach is the method developed to compute grid moments at interfaces between two refinement levels. Indeed, the hybrid method is adapted to accurately account for the special grid structure at the interfaces, avoiding any overlapping grid considerations. Some fundamental test runs were performed to validate our approach (e.g. quiet plasma flow, Alfven wave propagation). Lastly, we also show a planetary application of the model, simulating the interaction between Jupiter's moon Ganymede and the Jovian plasma.

  9. An Automatic 3D Mesh Generation Method for Domains with Multiple Materials.

    PubMed

    Zhang, Yongjie; Hughes, Thomas J R; Bajaj, Chandrajit L

    2010-01-01

    This paper describes an automatic and efficient approach to construct unstructured tetrahedral and hexahedral meshes for a composite domain made up of heterogeneous materials. The boundaries of these material regions form non-manifold surfaces. In earlier papers, we developed an octree-based isocontouring method to construct unstructured 3D meshes for a single-material (homogeneous) domain with manifold boundary. In this paper, we introduce the notion of a material change edge and use it to identify the interface between two or several different materials. A novel method to calculate the minimizer point for a cell shared by more than two materials is provided, which forms a non-manifold node on the boundary. We then mesh all the material regions simultaneously and automatically while conforming to their boundaries directly from volumetric data. Both material change edges and interior edges are analyzed to construct tetrahedral meshes, and interior grid points are analyzed for proper hexahedral mesh construction. Finally, edge-contraction and smoothing methods are used to improve the quality of tetrahedral meshes, and a combination of pillowing, geometric flow and optimization techniques is used for hexahedral mesh quality improvement. The shrink set of pillowing schemes is defined automatically as the boundary of each material region. Several application results of our multi-material mesh generation method are also provided. PMID:20161555

  10. A new method for automated discontinuity trace mapping on rock mass 3D surface model

    NASA Astrophysics Data System (ADS)

    Li, Xiaojun; Chen, Jianqin; Zhu, Hehua

    2016-04-01

    This paper presents an automated discontinuity trace mapping method on a 3D surface model of rock mass. Feature points of discontinuity traces are first detected using the Normal Tensor Voting Theory, which is robust to noisy point cloud data. Discontinuity traces are then extracted from feature points in four steps: (1) trace feature point grouping, (2) trace segment growth, (3) trace segment connection, and (4) redundant trace segment removal. A sensitivity analysis is conducted to identify optimal values for the parameters used in the proposed method. The optimal triangular mesh element size is between 5 cm and 6 cm; the angle threshold in the trace segment growth step is between 70° and 90°; the angle threshold in the trace segment connection step is between 50° and 70°, and the distance threshold should be at least 15 times the mean triangular mesh element size. The method is applied to the excavation face trace mapping of a drill-and-blast tunnel. The results show that the proposed discontinuity trace mapping method is fast and effective and could be used as a supplement to traditional direct measurement of discontinuity traces.

  11. Direct in vitro comparison of six 3D positive contrast methods for susceptibility marker imaging

    PubMed Central

    Vonken, Evert-jan P. A.; Schär, Michael; Yu, Jing; Bakker, Chris J. G.; Stuber, Matthias

    2012-01-01

    Purpose To compare different techniques for positive contrast imaging of susceptibility markers with MRI for 3D visualization. As several different techniques have been reported, the choice of the suitable method depends on its properties with regard to the amount of positive contrast and the desired background suppression, as well as other imaging constraints needed for a specific application. Materials and methods Six different positive contrast techniques are investigated for their ability to image at 3T a single susceptibility marker in vitro. The white marker method (WM), susceptibility gradient mapping (SGM), inversion recovery with on-resonant water suppression (IRON), frequency selective excitation (FSX), fast low flip-angle positive contrast SSFP (FLAPS), and iterative decomposition of water and fat with echo asymmetry and least-squares estimation (IDEAL) were implemented and investigated. Results The different methods were compared with respect to the volume of positive contrast, the product of volume and signal intensity, imaging time, and the level of background suppression. Quantitative results are provided and strengths and weaknesses of the different approaches are discussed. Conclusion The appropriate choice of positive contrast imaging technique depends on the desired level of background suppression, acquisition speed, and robustness against artifacts, for which in vitro comparative data is now available. PMID:23281151

  12. Method for producing micro heat panels

    NASA Technical Reports Server (NTRS)

    Camarda, Charles J. (Inventor); Peterson, George P. (Inventor); Rummler, Donald R. (Inventor)

    1997-01-01

    Flat or curved micro heat pipe panels are fabricated by arranging essentially parallel filaments in the shape of the desired panel. The configuration of the filaments corresponds to the desired configuration of the tubes that will constitute the heat pipes. A thermally conductive material is then deposited on and around the filaments to fill in the desired shape of the panel. The filaments are then removed, leaving tubular passageways of the desired configuration and surface texture in the material. The tubes are then filled with a working fluid and sealed. Composite micro heat pipe laminates are formed by layering individual micro heat pipe panels and bonding them to each other to form a single structure. The layering sequence of the micro heat pipe panels can be tailored to transport heat preferentially in specific directions as desired for a particular application.

  13. Thin film photovoltaic panel and method

    DOEpatents

    Ackerman, Bruce; Albright, Scot P.; Jordan, John F.

    1991-06-11

    A thin film photovoltaic panel includes a backcap for protecting the active components of the photovoltaic cells from adverse environmental elements. A spacing between the backcap and a top electrode layer is preferably filled with a desiccant to further reduce water vapor contamination of the environment surrounding the photovoltaic cells. The contamination of the spacing between the backcap and the cells may be further reduced by passing a selected gas through the spacing subsequent to sealing the backcap to the base of the photovoltaic panels, and once purged this spacing may be filled with an inert gas. The techniques of the present invention are preferably applied to thin film photovoltaic panels each formed from a plurality of photovoltaic cells arranged on a vitreous substrate. The stability of photovoltaic conversion efficiency remains relatively high during the life of the photovoltaic panel, and the cost of manufacturing highly efficient panels with such improved stability is significantly reduced.

  14. Linear traveltime perturbation interpolation: a novel method to compute 3-D traveltimes

    NASA Astrophysics Data System (ADS)

    Zhang, Jianzhong; Shi, Junjie; Song, Lin-Ping; Zhou, Hua-wei

    2015-10-01

    The linear traveltime interpolation has been a routine method to compute first arrivals of seismic waves and trace rays in complex media. The method assumes that traveltimes follow a linear distribution on each boundary of cells. The linearity assumption of traveltimes facilitates the numerical implementation but its violation may result in large computational errors. In this paper, we propose a new way to mitigate the potential shortcoming hidden in the linear traveltime interpolation. We use the vertex traveltimes in a calculated cell to introduce an equivalent homogeneous medium that is specific to the cell boundary from a source. Therefore, we can decompose the traveltime at a point on the cell boundary into two parts: (1) a reference traveltime propagating in the equivalent homogeneous medium and (2) a perturbation traveltime that is defined as the difference between the original and reference traveltimes. We now treat that the traveltime perturbation is linear along each boundary of cells instead of the traveltime. With the new assumption, we carry out the bilinear interpolation over traveltime perturbation to complete traveltime computation in a 3-D heterogeneous model. The numerical experiments show that the new method, the linear traveltime perturbation interpolation, is able to achieve much higher accuracy than that based on the linear traveltime interpolation.

  15. 3D Ultrasonic Non-destructive Evaluation of Spot Welds Using an Enhanced Total Focusing Method

    NASA Astrophysics Data System (ADS)

    Jasiuniene, Elena; Samaitis, Vykintas; Mazeika, Liudas; Sanderson, Ruth

    2015-02-01

    Spot welds are used to join sheets of metals in the automotive industry. When spot weld quality is evaluated using conventional ultrasonic manual pulse-echo method, the reliability of the inspection is affected by selection of the probe diameter and the positioning of the probe in the weld center. The application of a 2D matrix array is a potential solution to the aforementioned problems. The objective of this work was to develop a signal processing algorithm to reconstruct the 3D spot weld volume showing the size of the nugget and the defects in it. In order to achieve this, the conventional total focusing method was enhanced by taking into account the directivities of the single elements of the array and the divergence of the ultrasonic beam due to the propagation distance. Enhancements enabled a reduction in the background noise and uniform sensitivity at different depths to be obtained. The proposed algorithm was verified using a finite element model of ultrasonic wave propagation simulating three common spot weld conditions: a good weld, an undersized weld, and a weld containing a pore. The investigations have demonstrated that proposed method enables the determination of the size of the nugget and detection of discontinuities.

  16. Coordinate transformation method for the solution of inverse problem in 2D and 3D scatterometry

    NASA Astrophysics Data System (ADS)

    Ponnusamy, Sekar

    2005-05-01

    For scatterometry applications, diffraction analysis of gratings is carried out by using Rigorous Coupled Wave Analysis (RCWA). Though RCWA method is originally developed for lamellar gratings, arbitrary profiles can be analyzed using staircase approximation with S-Matrix propagation of field components. For improved accuracy, more number of Fourier waves need to be included in Floquet-Bloch expansion of the field components and also more number of slices are to be made in staircase approximation. These requirements increase the time required for the analysis. A coordinate transformation method (CTM) developed by Chandezon et. al renders the arbitrary grating profile into a plane surface in the new coordinate system and hence it does not require slicing. This method is extended to 3D structures by several authors notably, by Harris et al for non-orthogonal unit cells and by Granet for correct Fourier expansion. Also extended is to handle sharp-edged gratings through adaptive spatial resolution. In this paper, an attempt is made to employ CTM with correct Fourier expansion in conjunction with adaptive spatial resolution, for scatterometry applications. A MATLAB program is developed, and thereby, demonstrated that CTM can be used for diffraction analysis of trapezoidal profiles that are typically encountered in scatterometry applications.

  17. Advanced surface paneling method for subsonic and supersonic flow

    NASA Technical Reports Server (NTRS)

    Erickson, L. L.; Johnson, F. T.; Ehlers, F. E.

    1976-01-01

    Numerical results illustrating the capabilities of an advanced aerodynamic surface paneling method are presented. The method is applicable to both subsonic and supersonic flow, as represented by linearized potential flow theory. The method is based on linearly varying sources and quadratically varying doublets which are distributed over flat or curved panels. These panels are applied to the true surface geometry of arbitrarily shaped three dimensional aerodynamic configurations.

  18. A time-space domain stereo finite difference method for 3D scalar wave propagation

    NASA Astrophysics Data System (ADS)

    Chen, Yushu; Yang, Guangwen; Ma, Xiao; He, Conghui; Song, Guojie

    2016-11-01

    The time-space domain finite difference methods reduce numerical dispersion effectively by minimizing the error in the joint time-space domain. However, their interpolating coefficients are related with the Courant numbers, leading to significantly extra time costs for loading the coefficients consecutively according to velocity in heterogeneous models. In the present study, we develop a time-space domain stereo finite difference (TSSFD) method for 3D scalar wave equation. The method propagates both the displacements and their gradients simultaneously to keep more information of the wavefields, and minimizes the maximum phase velocity error directly using constant interpolation coefficients for different Courant numbers. We obtain the optimal constant coefficients by combining the truncated Taylor series approximation and the time-space domain optimization, and adjust the coefficients to improve the stability condition. Subsequent investigation shows that the TSSFD can suppress numerical dispersion effectively with high computational efficiency. The maximum phase velocity error of the TSSFD is just 3.09% even with only 2 sampling points per minimum wavelength when the Courant number is 0.4. Numerical experiments show that to generate wavefields with no visible numerical dispersion, the computational efficiency of the TSSFD is 576.9%, 193.5%, 699.0%, and 191.6% of those of the 4th-order and 8th-order Lax-Wendroff correction (LWC) method, the 4th-order staggered grid method (SG), and the 8th-order optimal finite difference method (OFD), respectively. Meanwhile, the TSSFD is compatible to the unsplit convolutional perfectly matched layer (CPML) boundary condition for absorbing artificial boundaries. The efficiency and capability to handle complex velocity models make it an attractive tool in imaging methods such as acoustic reverse time migration (RTM).

  19. Novel methods for estimating 3D distributions of radioactive isotopes in materials

    NASA Astrophysics Data System (ADS)

    Iwamoto, Y.; Kataoka, J.; Kishimoto, A.; Nishiyama, T.; Taya, T.; Okochi, H.; Ogata, H.; Yamamoto, S.

    2016-09-01

    In recent years, various gamma-ray visualization techniques, or gamma cameras, have been proposed. These techniques are extremely effective for identifying "hot spots" or regions where radioactive isotopes are accumulated. Examples of such would be nuclear-disaster-affected areas such as Fukushima or the vicinity of nuclear reactors. However, the images acquired with a gamma camera do not include distance information between radioactive isotopes and the camera, and hence are "degenerated" in the direction of the isotopes. Moreover, depth information in the images is lost when the isotopes are embedded in materials, such as water, sand, and concrete. Here, we propose two methods of obtaining depth information of radioactive isotopes embedded in materials by comparing (1) their spectra and (2) images of incident gamma rays scattered by the materials and direct gamma rays. In the first method, the spectra of radioactive isotopes and the ratios of scattered to direct gamma rays are obtained. We verify experimentally that the ratio increases with increasing depth, as predicted by simulations. Although the method using energy spectra has been studied for a long time, an advantage of our method is the use of low-energy (50-150 keV) photons as scattered gamma rays. In the second method, the spatial extent of images obtained for direct and scattered gamma rays is compared. By performing detailed Monte Carlo simulations using Geant4, we verify that the spatial extent of the position where gamma rays are scattered increases with increasing depth. To demonstrate this, we are developing various gamma cameras to compare low-energy (scattered) gamma-ray images with fully photo-absorbed gamma-ray images. We also demonstrate that the 3D reconstruction of isotopes/hotspots is possible with our proposed methods. These methods have potential applications in the medical fields, and in severe environments such as the nuclear-disaster-affected areas in Fukushima.

  20. Using Adjoint Methods to Improve 3-D Velocity Models of Southern California

    NASA Astrophysics Data System (ADS)

    Liu, Q.; Tape, C.; Maggi, A.; Tromp, J.

    2006-12-01

    We use adjoint methods popular in climate and ocean dynamics to calculate Fréchet derivatives for tomographic inversions in southern California. The Fréchet derivative of an objective function χ(m), where m denotes the Earth model, may be written in the generic form δχ=int Km(x) δln m(x) d3x, where δln m=δ m/m denotes the relative model perturbation. For illustrative purposes, we construct the 3-D finite-frequency banana-doughnut kernel Km, corresponding to the misfit of a single traveltime measurement, by simultaneously computing the 'adjoint' wave field s† forward in time and reconstructing the regular wave field s backward in time. The adjoint wave field is produced by using the time-reversed velocity at the receiver as a fictitious source, while the regular wave field is reconstructed on the fly by propagating the last frame of the wave field saved by a previous forward simulation backward in time. The approach is based upon the spectral-element method, and only two simulations are needed to produce density, shear-wave, and compressional-wave sensitivity kernels. This method is applied to the SCEC southern California velocity model. Various density, shear-wave, and compressional-wave sensitivity kernels are presented for different phases in the seismograms. We also generate 'event' kernels for Pnl, S and surface waves, which are the Fréchet kernels of misfit functions that measure the P, S or surface wave traveltime residuals at all the receivers simultaneously for one particular event. Effectively, an event kernel is a sum of weighted Fréchet kernels, with weights determined by the associated traveltime anomalies. By the nature of the 3-D simulation, every event kernel is also computed based upon just two simulations, i.e., its construction costs the same amount of computation time as an individual banana-doughnut kernel. One can think of the sum of the event kernels for all available earthquakes, called the 'misfit' kernel, as a graphical

  1. Aerosol based direct-write micro-additive fabrication method for sub-mm 3D metal-dielectric structures

    NASA Astrophysics Data System (ADS)

    Rahman, Taibur; Renaud, Luke; Heo, Deuk; Renn, Michael; Panat, Rahul

    2015-10-01

    The fabrication of 3D metal-dielectric structures at sub-mm length scale is highly important in order to realize low-loss passives and GHz wavelength antennas with applications in wearable and Internet-of-Things (IoT) devices. The inherent 2D nature of lithographic processes severely limits the available manufacturing routes to fabricate 3D structures. Further, the lithographic processes are subtractive and require the use of environmentally harmful chemicals. In this letter, we demonstrate an additive manufacturing method to fabricate 3D metal-dielectric structures at sub-mm length scale. A UV curable dielectric is dispensed from an Aerosol Jet system at 10-100 µm length scale and instantaneously cured to build complex 3D shapes at a length scale  <1 mm. A metal nanoparticle ink is then dispensed over the 3D dielectric using a combination of jetting action and tilted dispense head, also using the Aerosol Jet technique and at a length scale 10-100 µm, followed by the nanoparticle sintering. Simulation studies are carried out to demonstrate the feasibility of using such structures as mm-wave antennas. The manufacturing method described in this letter opens up the possibility of fabricating an entirely new class of custom-shaped 3D structures at a sub-mm length scale with potential applications in 3D antennas and passives.

  2. System and method for 3-D/3-D registration between non-contrast-enhanced CBCT and contrast-enhanced CT for abdominal aortic aneurysm stenting.

    PubMed

    Miao, Shun; Liao, Rui; Pfister, Marcus; Zhang, Li; Ordy, Vincent

    2013-01-01

    In this paper, we present an image guidance system for abdominal aortic aneurysm stenting, which brings pre-operative 3-D computed tomography (CT) into the operating room by registering it against intra-operative non-contrast-enhanced cone-beam CT (CBCT). Registration between CT and CBCT volumes is a challenging task due to two factors: the relatively low signal-to-noise ratio of the abdominal aorta in CBCT without contrast enhancement, and the drastically different field of view between the two image modalities. The proposed automatic registration method handles the first issue through a fast quasi-global search utilizing surrogate 2-D images, and solves the second problem by relying on neighboring dominant structures of the abdominal aorta (i.e. the spine) for initial coarse alignment, and using a confined and image-processed volume of interest around the abdominal aorta for fine registration. The proposed method is validated offline using 17 clinical datasets, and achieves 1.48 mm target registration error and 100% success rate in 2.83 s. The prototype system has been installed in hospitals for clinical trial and applied in around 30 clinical cases, with 100% success rate reported qualitatively. PMID:24505689

  3. New Advances for a joint 3D inversion of multiple EM methods

    NASA Astrophysics Data System (ADS)

    Meqbel, N. M.; Ritter, O.

    2013-12-01

    Electromagnetic (EM) methods are routinely applied to image the subsurface from shallow to regional structures. Individual EM methods differ in their sensitivities towards resistive and conductive structures as well as in their exploration depths. Joint 3D inversion of multiple EM data sets can result in significantly better resolution of subsurface structures than the individual inversions. Proper weighting between different EM data is essential, however. We present a recently developed weighting algorithm to combine magnetotelluric (MT), controlled source EM (CSEM) and DC-geoelectric (DC) data. It is well known that MT data are mostly sensible to regional conductive structures, whereas, CSEM and DC data are more suitable to recover more shallow and resistive structures. Our new scheme is based on weighting individual components of the total data gradient after each model update. Norms of each data residual are used to assess how much weight individual components of the total data gradient must have to achieve an equal contribution of all data sets in the inverse model. A numerically efficient way to search for appropriate weighting factors could be established by applying a bi-diagonalization procedure to the sensitivity matrix. Thereby, the original inverse problem can be projected onto a smaller dimension in which the search of weighting factors is numerically cheap. We demonstrate the efficiency of the proposed weighting schemes and explore the model domain with synthetic data sets.

  4. Asymmetric Outer Bow Length and Cervical Headgear Force System: 3D Analysis Using Finite Element Method

    PubMed Central

    Geramy, Allahyar; Hassanpour, Mehdi; Emadian Razavi, Elham sadat

    2015-01-01

    Objectives: This study sought to assess distal and lateral forces and moments of asymmetric headgears by variable outer bow lengths. Materials and Methods: Four 3D finite element method (FEM) models of a cervical headgear attached to the maxillary first molars were designed in SolidWorks 2010 software and transferred to ANSYS Workbench ver. 11 software. Models contained the first molars, their periodontal ligament (PDL), cancellous and cortical bones, a mesiodistal slice of the maxillae and the headgear. Models were the same except for the outer bow length in headgears. The headgear was symmetric in model 1. In models 2 to 4, the headgears were asymmetric in length with differences of 5mm, 10mm and 15mm, respectively. A 2.5 N force in horizontal plane was applied and the loading manner of each side of the outer bow was calculated trigonometrically using data from a volunteer. Results: The 15mm difference in outer bow length caused the greatest difference in lateral (=0.21 N) and distal (= 1.008 N) forces and also generated moments (5.044 N.mm). Conclusion: As the difference in outer bow length became greater, asymmetric effects increased. Greater distal force in the longer arm side was associated with greater lateral force towards the shorter arm side and more net yawing moment. Clinical Relevance: A difference range of 1mm to 15 mm of length in cervical headgear can be considered as a safe length of outer bow shortening in clinical use. PMID:26622275

  5. Segmentation of 3D cell membrane images by PDE methods and its applications.

    PubMed

    Mikula, K; Peyriéras, N; Remešíková, M; Stašová, O

    2011-06-01

    We present a set of techniques that enable us to segment objects from 3D cell membrane images. Particularly, we propose methods for detection of approximate cell nuclei centers, extraction of the inner cell boundaries, the surface of the organism and the intercellular borders--the so called intercellular skeleton. All methods are based on numerical solution of partial differential equations. The center detection problem is represented by a level set equation for advective motion in normal direction with curvature term. In case of the inner cell boundaries and the global surface, we use the generalized subjective surface model. The intercellular borders are segmented by the advective level set equation where the velocity field is given by the gradient of the signed distance function to the segmented inner cell boundaries. The distance function is computed by solving the time relaxed eikonal equation. We describe the mathematical models, explain their numerical approximation and finally we present various possible practical applications on the images of zebrafish embryogenesis--computation of important quantitative characteristics, evaluation of the cell shape, detection of cell divisions and others.

  6. Current Status of Surgical Planning for Orthognathic Surgery: Traditional Methods versus 3D Surgical Planning

    PubMed Central

    Hammoudeh, Jeffrey A.; Howell, Lori K.; Boutros, Shadi; Scott, Michelle A.

    2015-01-01

    Background: Orthognathic surgery has traditionally been performed using stone model surgery. This involves translating desired clinical movements of the maxilla and mandible into stone models that are then cut and repositioned into class I occlusion from which a splint is generated. Model surgery is an accurate and reproducible method of surgical correction of the dentofacial skeleton in cleft and noncleft patients, albeit considerably time-consuming. With the advent of computed tomography scanning, 3D imaging and virtual surgical planning (VSP) have gained a foothold in orthognathic surgery with VSP rapidly replacing traditional model surgery in many parts of the country and the world. What has yet to be determined is whether the application and feasibility of virtual model surgery is at a point where it will eliminate the need for traditional model surgery in both the private and academic setting. Methods: Traditional model surgery was compared with VSP splint fabrication to determine the feasibility of use and accuracy of application in orthognathic surgery within our institution. Results: VSP was found to generate acrylic splints of equal quality to model surgery splints in a fraction of the time. Drawbacks of VSP splint fabrication are the increased cost of production and certain limitations as it relates to complex craniofacial patients. Conclusions: It is our opinion that virtual model surgery will displace and replace traditional model surgery as it will become cost and time effective in both the private and academic setting for practitioners providing orthognathic surgical care in cleft and noncleft patients. PMID:25750846

  7. An interface reconstruction method based on an analytical formula for 3D arbitrary convex cells

    DOE PAGES

    Diot, Steven; François, Marianne M.

    2015-10-22

    In this study, we are interested in an interface reconstruction method for 3D arbitrary convex cells that could be used in multi-material flow simulations for instance. We assume that the interface is represented by a plane whose normal vector is known and we focus on the volume-matching step that consists in finding the plane constant so that it splits the cell according to a given volume fraction. We follow the same approach as in the recent authors' publication for 2D arbitrary convex cells in planar and axisymmetrical geometries, namely we derive an analytical formula for the volume of the specificmore » prismatoids obtained when decomposing the cell using the planes that are parallel to the interface and passing through all the cell nodes. This formula is used to bracket the interface plane constant such that the volume-matching problem is rewritten in a single prismatoid in which the same formula is used to find the final solution. Finally, the proposed method is tested against an important number of reproducible configurations and shown to be at least five times faster.« less

  8. A cheap and easy method for 3D C-arm reconstruction using elliptic curves

    NASA Astrophysics Data System (ADS)

    Burkhardt, David; Jain, Ameet; Fichtinger, Gabor

    2007-03-01

    For quantitative C-arm fluoroscopy, we had earlier proposed a unified mathematical framework to tackle the issues of pose estimation, correspondence and reconstruction, without the use of external trackers. The method used randomly distributed unknown points in the imaging volume, either naturally present or induced by placing beads on the patient. These points were then inputted to an algorithm that computed the 3D reconstruction. The algorithm had an 8° region of convergence, which in general could be considered sufficient for most applications. Here, we extend the earlier algorithm to make it more robust and clinically acceptable. We propose the use of a circle/ellipse, naturally found in many images. We show that the projection of elliptic curves constrain 5 out of the 6 degrees of freedom of the C-arm pose. To completely recover the true C-arm pose, we use constraints in the form of point correspondences between the images. We provide an algorithm to easily obtain a virtual correspondence across all the images and show that two correspondences can recover the true pose 95% of the time when the seeds employed are separated by a distance of 40 mm. or greater. Phantom experiments across three images indicate a pose estimation accuracy of 1.7° using an ellipse and two sufficiently separated point correspondences. Average execution time in this case is 130 seconds. The method appears to be suffciently accurate for clinical applications and does not require any significant modification of clinical protocol.

  9. 3D reconstruction and quantitative assessment method of mitral eccentric regurgitation from color Doppler echocardiography

    NASA Astrophysics Data System (ADS)

    Liu, Qi; Ge, Yi Nan; Wang, Tian Fu; Zheng, Chang Qiong; Zheng, Yi

    2005-10-01

    Based on the two-dimensional color Doppler image in this article, multilane transesophageal rotational scanning method is used to acquire original Doppler echocardiography while echocardiogram is recorded synchronously. After filtering and interpolation, the surface rendering and volume rendering methods are performed. Through analyzing the color-bar information and the color Doppler flow image's superposition principle, the grayscale mitral anatomical structure and color-coded regurgitation velocity parameter were separated from color Doppler flow images, three-dimensional reconstruction of mitral structure and regurgitation velocity distribution was implemented separately, fusion visualization of the reconstructed regurgitation velocity distribution parameter with its corresponding 3D mitral anatomical structures was realized, which can be used in observing the position, phase, direction and measuring the jet length, area, volume, space distribution and severity level of the mitral regurgitation. In addition, in patients with eccentric mitral regurgitation, this new modality overcomes the inherent limitations of two-dimensional color Doppler flow image by depicting the full extent of the jet trajectory, the area of eccentric regurgitation on three-dimensional image was much larger than that on two-dimensional image, the area variation tendency and volume variation tendency of regurgitation have been shown in figure at different angle and different systolic phase. The study shows that three-dimensional color Doppler provides quantitative measurements of eccentric mitral regurgitation that are more accurate and reproducible than conventional color Doppler.

  10. GPU-Based Visualization of 3D Fluid Interfaces using Level Set Methods

    NASA Astrophysics Data System (ADS)

    Kadlec, B. J.

    2009-12-01

    We model a simple 3D fluid-interface problem using the level set method and visualize the interface as a dynamic surface. Level set methods allow implicit handling of complex topologies deformed by evolutions where sharp changes and cusps are present without destroying the representation. We present a highly optimized visualization and computation algorithm that is implemented in CUDA to run on the NVIDIA GeForce 295 GTX. CUDA is a general purpose parallel computing architecture that allows the NVIDIA GPU to be treated like a data parallel supercomputer in order to solve many computational problems in a fraction of the time required on a CPU. CUDA is compared to the new OpenCL™ (Open Computing Language), which is designed to run on heterogeneous computing environments but does not take advantage of low-level features in NVIDIA hardware that provide significant speedups. Therefore, our technique is implemented using CUDA and results are compared to a single CPU implementation to show the benefits of using the GPU and CUDA for visualizing fluid-interface problems. We solve a 1024^3 problem and experience significant speedup using the NVIDIA GeForce 295 GTX. Implementation details for mapping the problem to the GPU architecture are described as well as discussion on porting the technique to heterogeneous devices (AMD, Intel, IBM) using OpenCL. The results present a new interactive system for computing and visualizing the evolution of fluid interface problems on the GPU.

  11. Some Progress in Large-Eddy Simulation using the 3-D Vortex Particle Method

    NASA Technical Reports Server (NTRS)

    Winckelmans, G. S.

    1995-01-01

    This two-month visit at CTR was devoted to investigating possibilities in LES modeling in the context of the 3-D vortex particle method (=vortex element method, VEM) for unbounded flows. A dedicated code was developed for that purpose. Although O(N(sup 2)) and thus slow, it offers the advantage that it can easily be modified to try out many ideas on problems involving up to N approx. 10(exp 4) particles. Energy spectrums (which require O(N(sup 2)) operations per wavenumber) are also computed. Progress was realized in the following areas: particle redistribution schemes, relaxation schemes to maintain the solenoidal condition on the particle vorticity field, simple LES models and their VEM extension, possible new avenues in LES. Model problems that involve strong interaction between vortex tubes were computed, together with diagnostics: total vorticity, linear and angular impulse, energy and energy spectrum, enstrophy. More work is needed, however, especially regarding relaxation schemes and further validation and development of LES models for VEM. Finally, what works well will eventually have to be incorporated into the fast parallel tree code.

  12. An interface reconstruction method based on an analytical formula for 3D arbitrary convex cells

    SciTech Connect

    Diot, Steven; François, Marianne M.

    2015-10-22

    In this study, we are interested in an interface reconstruction method for 3D arbitrary convex cells that could be used in multi-material flow simulations for instance. We assume that the interface is represented by a plane whose normal vector is known and we focus on the volume-matching step that consists in finding the plane constant so that it splits the cell according to a given volume fraction. We follow the same approach as in the recent authors' publication for 2D arbitrary convex cells in planar and axisymmetrical geometries, namely we derive an analytical formula for the volume of the specific prismatoids obtained when decomposing the cell using the planes that are parallel to the interface and passing through all the cell nodes. This formula is used to bracket the interface plane constant such that the volume-matching problem is rewritten in a single prismatoid in which the same formula is used to find the final solution. Finally, the proposed method is tested against an important number of reproducible configurations and shown to be at least five times faster.

  13. Transient 3d contact problems—NTS method: mixed methods and conserving integration

    NASA Astrophysics Data System (ADS)

    Hesch, Christian; Betsch, Peter

    2011-10-01

    The present work deals with a new formulation for transient large deformation contact problems. It is well known, that one-step implicit time integration schemes for highly non-linear systems fail to conserve the total energy of the system. To deal with this drawback, a mixed method is newly proposed in conjunction with the concept of a discrete gradient. In particular, we reformulate the well known and widely-used node-to-segment methods and establish an energy-momentum scheme. The advocated approach ensures robustness and enhanced numerical stability, demonstrated in several three-dimensional applications of the proposed algorithm.

  14. 3D Method for the Design of Multi Sheet Beam RF Sources

    SciTech Connect

    Krasnykh, Anatoly

    2002-08-14

    Lowering the voltage of the RF sources can reduce the cost of future accelerator systems. This can be accomplished using multiple beam guns or guns with sheet beam in tubes creating high RF power. However, the optical design is almost impossible without 3D analysis, since the devices are no longer axis-symmetric. A new approach for 3D analysis of the electron gun and beam optics utilizes a combination of 3D MAFIA and TOPAZ computer programs. An algorithm based on perturbation theory provides a 3D correction to the 2D, self-consistent field solutions. This information is used to study propagated charged particles through the problem domain. Applications of this technique to the design of a high power multiple beam guns is discussed.

  15. Validating 3D Seismic Velocity Models Using the Spectral Element Method

    NASA Astrophysics Data System (ADS)

    Maceira, M.; Rowe, C. A.; Allen, R. M.; Obrebski, M. J.

    2010-12-01

    As seismic instrumentation, data storage and dissemination and computational power improve, seismic velocity models attempt to resolve smaller structures and cover larger areas. However, it is unclear how accurate these velocity models are and, while the best models available are used for event determination, it is difficult to put uncertainties on seismic event parameters. Model validation is typically done using resolution tests that assume the imaging theory used is accurate and thus only considers the impact of the data coverage on resolution. We present the results of a more rigorous approach to model validation via full three-dimensional waveform propagation using Spectral Element Methods (SEM). This approach makes no assumptions about the theory used to generate the models but require substantial computational resources. We first validate 3D tomographic models for the Western USA generated using both ray-theoretical and finite-frequency methods. The Dynamic North America (DNA) Models of P- and S- velocity structure (DNA09-P and DNA09-S) use teleseismic body-wave traveltime residuals recorded at over 800 seismic stations provided by the Earthscope USArray and regional seismic networks. We performed systematic computations of synthetics for the dataset used to generate the DNA models. Direct comparison of these synthetic seismograms to the actual observations allows us to accurately assess and validate the models. Implementation of the method for a densely instrumented region such as that covered by the DNA model provides a useful testbed for the validation methods that we will subsequently apply to other, more challenging study areas.

  16. NCC-RANSAC: A Fast Plane Extraction Method for 3-D Range Data Segmentation

    PubMed Central

    Qian, Xiangfei; Ye, Cang

    2015-01-01

    This paper presents a new plane extraction (PE) method based on the random sample consensus (RANSAC) approach. The generic RANSAC-based PE algorithm may over-extract a plane, and it may fail in case of a multistep scene where the RANSAC procedure results in multiple inlier patches that form a slant plane straddling the steps. The CC-RANSAC PE algorithm successfully overcomes the latter limitation if the inlier patches are separate. However, it fails if the inlier patches are connected. A typical scenario is a stairway with a stair wall where the RANSAC plane-fitting procedure results in inliers patches in the tread, riser, and stair wall planes. They connect together and form a plane. The proposed method, called normal-coherence CC-RANSAC (NCC-RANSAC), performs a normal coherence check to all data points of the inlier patches and removes the data points whose normal directions are contradictory to that of the fitted plane. This process results in separate inlier patches, each of which is treated as a candidate plane. A recursive plane clustering process is then executed to grow each of the candidate planes until all planes are extracted in their entireties. The RANSAC plane-fitting and the recursive plane clustering processes are repeated until no more planes are found. A probabilistic model is introduced to predict the success probability of the NCC-RANSAC algorithm and validated with real data of a 3-D time-of-flight camera–SwissRanger SR4000. Experimental results demonstrate that the proposed method extracts more accurate planes with less computational time than the existing RANSAC-based methods. PMID:24771605

  17. NCC-RANSAC: a fast plane extraction method for 3-D range data segmentation.

    PubMed

    Qian, Xiangfei; Ye, Cang

    2014-12-01

    This paper presents a new plane extraction (PE) method based on the random sample consensus (RANSAC) approach. The generic RANSAC-based PE algorithm may over-extract a plane, and it may fail in case of a multistep scene where the RANSAC procedure results in multiple inlier patches that form a slant plane straddling the steps. The CC-RANSAC PE algorithm successfully overcomes the latter limitation if the inlier patches are separate. However, it fails if the inlier patches are connected. A typical scenario is a stairway with a stair wall where the RANSAC plane-fitting procedure results in inliers patches in the tread, riser, and stair wall planes. They connect together and form a plane. The proposed method, called normal-coherence CC-RANSAC (NCC-RANSAC), performs a normal coherence check to all data points of the inlier patches and removes the data points whose normal directions are contradictory to that of the fitted plane. This process results in separate inlier patches, each of which is treated as a candidate plane. A recursive plane clustering process is then executed to grow each of the candidate planes until all planes are extracted in their entireties. The RANSAC plane-fitting and the recursive plane clustering processes are repeated until no more planes are found. A probabilistic model is introduced to predict the success probability of the NCC-RANSAC algorithm and validated with real data of a 3-D time-of-flight camera-SwissRanger SR4000. Experimental results demonstrate that the proposed method extracts more accurate planes with less computational time than the existing RANSAC-based methods.

  18. 3D digitization methods based on laser excitation and active triangulation: a comparison

    NASA Astrophysics Data System (ADS)

    Aubreton, Olivier; Mériaudeau, Fabrice; Truchetet, Frédéric

    2016-04-01

    3D reconstruction of surfaces is an important topic in computer vision and corresponds to a large field of applications: industrial inspection, reverse engineering, object recognition, biometry, archeology… Because of the large varieties of applications, one can find in the literature a lot of approaches which can be classified into two families: passive and active [1]. Certainly because of their reliability, active approaches, using imaging system with an additional controlled light source, seem to be the most commonly used in the industrial field. In this domain, the 3D digitization approach based on active 3D triangulation has had important developments during the last ten years [2] and seems to be mature today if considering the important number of systems proposed by manufacturers. Unfortunately, the performances of active 3D scanners depend on the optical properties of the surface to digitize. As an example, on Fig 1.a, a 3D shape with a diffuse surface has been digitized with Comet V scanner (Steinbichler). The 3D reconstruction is presented on Fig 1.b. The same experiment was carried out on a similar object (same shape) but presenting a specular surface (Fig 1.c and Fig 1.d) ; it can clearly be observed, that the specularity influences of the performance of the digitization.

  19. A 3D Visualization Method for Bladder Filling Examination Based on EIT

    PubMed Central

    He, Wei; Ran, Peng; Xu, Zheng; Li, Bing; Li, Song-nong

    2012-01-01

    As the researches of electric impedance tomography (EIT) applications in medical examinations deepen, we attempt to produce the visualization of 3D images of human bladder. In this paper, a planar electrode array system will be introduced as the measuring platform and a series of feasible methods are proposed to evaluate the simulated volume of bladder to avoid overfilling. The combined regularization algorithm enhances the spatial resolution and presents distinguishable sketch of disturbances from the background, which provides us with reliable data from inverse problem to carry on to the three-dimensional reconstruction. By detecting the edge elements and tracking down the lost information, we extract quantitative morphological features of the object from the noises and background. Preliminary measurements were conducted and the results showed that the proposed algorithm overcomes the defects of holes, protrusions, and debris in reconstruction. In addition, the targets' location in space and roughly volume could be calculated according to the grid of finite element of the model, and this feature was never achievable for the previous 2D imaging. PMID:23365617

  20. Image reconstruction for 3D light microscopy with a regularized linear method incorporating a smoothness prior

    NASA Astrophysics Data System (ADS)

    Preza, Chrysanthe; Miller, Michael I.; Conchello, Jose-Angel

    1993-07-01

    We have shown that the linear least-squares (LLS) estimate of the intensities of a 3-D object obtained from a set of optical sections is unstable due to the inversion of small and zero-valued eigenvalues of the point-spread function (PSF) operator. The LLS solution was regularized by constraining it to lie in a subspace spanned by the eigenvectors corresponding to a selected number of the largest eigenvalues. In this paper we extend the regularized LLS solution to a maximum a posteriori (MAP) solution induced by a prior formed from a 'Good's like' smoothness penalty. This approach also yields a regularized linear estimator which reduces noise as well as edge artifacts in the reconstruction. The advantage of the linear MAP (LMAP) estimate over the current regularized LLS (RLLS) is its ability to regularize the inverse problem by smoothly penalizing components in the image associated with small eigenvalues. Computer simulations were performed using a theoretical PSF and a simple phantom to compare the two regularization techniques. It is shown that the reconstructions using the smoothness prior, give superior variance and bias results compared to the RLLS reconstructions. Encouraging reconstructions obtained with the LMAP method from real microscopical images of a 10 micrometers fluorescent bead, and a four-cell Volvox embryo are shown.

  1. Orthodontic intrusion of maxillary incisors: a 3D finite element method study

    PubMed Central

    Saga, Armando Yukio; Maruo, Hiroshi; Argenta, Marco André; Maruo, Ivan Toshio; Tanaka, Orlando Motohiro

    2016-01-01

    Objective: In orthodontic treatment, intrusion movement of maxillary incisors is often necessary. Therefore, the objective of this investigation is to evaluate the initial distribution patterns and magnitude of compressive stress in the periodontal ligament (PDL) in a simulation of orthodontic intrusion of maxillary incisors, considering the points of force application. Methods: Anatomic 3D models reconstructed from cone-beam computed tomography scans were used to simulate maxillary incisors intrusion loading. The points of force application selected were: centered between central incisors brackets (LOAD 1); bilaterally between the brackets of central and lateral incisors (LOAD 2); bilaterally distal to the brackets of lateral incisors (LOAD 3); bilaterally 7 mm distal to the center of brackets of lateral incisors (LOAD 4). Results and Conclusions: Stress concentrated at the PDL apex region, irrespective of the point of orthodontic force application. The four load models showed distinct contour plots and compressive stress values over the midsagittal reference line. The contour plots of central and lateral incisors were not similar in the same load model. LOAD 3 resulted in more balanced compressive stress distribution. PMID:27007765

  2. Evaluation of a 3D point cloud tetrahedral tomographic reconstruction method

    PubMed Central

    Pereira, N F; Sitek, A

    2011-01-01

    Tomographic reconstruction on an irregular grid may be superior to reconstruction on a regular grid. This is achieved through an appropriate choice of the image space model, the selection of an optimal set of points and the use of any available prior information during the reconstruction process. Accordingly, a number of reconstruction-related parameters must be optimized for best performance. In this work, a 3D point cloud tetrahedral mesh reconstruction method is evaluated for quantitative tasks. A linear image model is employed to obtain the reconstruction system matrix and five point generation strategies are studied. The evaluation is performed using the recovery coefficient, as well as voxel- and template-based estimates of bias and variance measures, computed over specific regions in the reconstructed image. A similar analysis is performed for regular grid reconstructions that use voxel basis functions. The maximum likelihood expectation maximization reconstruction algorithm is used. For the tetrahedral reconstructions, of the five point generation methods that are evaluated, three use image priors. For evaluation purposes, an object consisting of overlapping spheres with varying activity is simulated. The exact parallel projection data of this object are obtained analytically using a parallel projector, and multiple Poisson noise realizations of these exact data are generated and reconstructed using the different point generation strategies. The unconstrained nature of point placement in some of the irregular mesh-based reconstruction strategies has superior activity recovery for small, low-contrast image regions. The results show that, with an appropriately generated set of mesh points, the irregular grid reconstruction methods can out-perform reconstructions on a regular grid for mathematical phantoms, in terms of the performance measures evaluated. PMID:20736496

  3. 3D CSEM data inversion using Newton and Halley class methods

    NASA Astrophysics Data System (ADS)

    Amaya, M.; Hansen, K. R.; Morten, J. P.

    2016-05-01

    For the first time in 3D controlled source electromagnetic data inversion, we explore the use of the Newton and the Halley optimization methods, which may show their potential when the cost function has a complex topology. The inversion is formulated as a constrained nonlinear least-squares problem which is solved by iterative optimization. These methods require the derivatives up to second order of the residuals with respect to model parameters. We show how Green's functions determine the high-order derivatives, and develop a diagrammatical representation of the residual derivatives. The Green's functions are efficiently calculated on-the-fly, making use of a finite-difference frequency-domain forward modelling code based on a multi-frontal sparse direct solver. This allow us to build the second-order derivatives of the residuals keeping the memory cost in the same order as in a Gauss-Newton (GN) scheme. Model updates are computed with a trust-region based conjugate-gradient solver which does not require the computation of a stabilizer. We present inversion results for a synthetic survey and compare the GN, Newton, and super-Halley optimization schemes, and consider two different approaches to set the initial trust-region radius. Our analysis shows that the Newton and super-Halley schemes, using the same regularization configuration, add significant information to the inversion so that the convergence is reached by different paths. In our simple resistivity model examples, the convergence speed of the Newton and the super-Halley schemes are either similar or slightly superior with respect to the convergence speed of the GN scheme, close to the minimum of the cost function. Due to the current noise levels and other measurement inaccuracies in geophysical investigations, this advantageous behaviour is at present of low consequence, but may, with the further improvement of geophysical data acquisition, be an argument for more accurate higher-order methods like those

  4. Unstructured Cartesian refinement with sharp interface immersed boundary method for 3D unsteady incompressible flows

    NASA Astrophysics Data System (ADS)

    Angelidis, Dionysios; Chawdhary, Saurabh; Sotiropoulos, Fotis

    2016-11-01

    A novel numerical method is developed for solving the 3D, unsteady, incompressible Navier-Stokes equations on locally refined fully unstructured Cartesian grids in domains with arbitrarily complex immersed boundaries. Owing to the utilization of the fractional step method on an unstructured Cartesian hybrid staggered/non-staggered grid layout, flux mismatch and pressure discontinuity issues are avoided and the divergence free constraint is inherently satisfied to machine zero. Auxiliary/hanging nodes are used to facilitate the discretization of the governing equations. The second-order accuracy of the solver is ensured by using multi-dimension Lagrange interpolation operators and appropriate differencing schemes at the interface of regions with different levels of refinement. The sharp interface immersed boundary method is augmented with local near-boundary refinement to handle arbitrarily complex boundaries. The discrete momentum equation is solved with the matrix free Newton-Krylov method and the Krylov-subspace method is employed to solve the Poisson equation. The second-order accuracy of the proposed method on unstructured Cartesian grids is demonstrated by solving the Poisson equation with a known analytical solution. A number of three-dimensional laminar flow simulations of increasing complexity illustrate the ability of the method to handle flows across a range of Reynolds numbers and flow regimes. Laminar steady and unsteady flows past a sphere and the oblique vortex shedding from a circular cylinder mounted between two end walls demonstrate the accuracy, the efficiency and the smooth transition of scales and coherent structures across refinement levels. Large-eddy simulation (LES) past a miniature wind turbine rotor, parameterized using the actuator line approach, indicates the ability of the fully unstructured solver to simulate complex turbulent flows. Finally, a geometry resolving LES of turbulent flow past a complete hydrokinetic turbine illustrates

  5. Introducing 3D U-statistic method for separating anomaly from background in exploration geochemical data with associated software development

    NASA Astrophysics Data System (ADS)

    Ghannadpour, Seyyed Saeed; Hezarkhani, Ardeshir

    2016-03-01

    The U-statistic method is one of the most important structural methods to separate the anomaly from the background. It considers the location of samples and carries out the statistical analysis of the data without judging from a geochemical point of view and tries to separate subpopulations and determine anomalous areas. In the present study, to use U-statistic method in three-dimensional (3D) condition, U-statistic is applied on the grade of two ideal test examples, by considering sample Z values (elevation). So far, this is the first time that this method has been applied on a 3D condition. To evaluate the performance of 3D U-statistic method and in order to compare U-statistic with one non-structural method, the method of threshold assessment based on median and standard deviation (MSD method) is applied on the two example tests. Results show that the samples indicated by U-statistic method as anomalous are more regular and involve less dispersion than those indicated by the MSD method. So that, according to the location of anomalous samples, denser areas of them can be determined as promising zones. Moreover, results show that at a threshold of U = 0, the total error of misclassification for U-statistic method is much smaller than the total error of criteria of bar {x}+n× s. Finally, 3D model of two test examples for separating anomaly from background using 3D U-statistic method is provided. The source code for a software program, which was developed in the MATLAB programming language in order to perform the calculations of the 3D U-spatial statistic method, is additionally provided. This software is compatible with all the geochemical varieties and can be used in similar exploration projects.

  6. Stereoscopic display technologies for FHD 3D LCD TV

    NASA Astrophysics Data System (ADS)

    Kim, Dae-Sik; Ko, Young-Ji; Park, Sang-Moo; Jung, Jong-Hoon; Shestak, Sergey

    2010-04-01

    Stereoscopic display technologies have been developed as one of advanced displays, and many TV industrials have been trying commercialization of 3D TV. We have been developing 3D TV based on LCD with LED BLU (backlight unit) since Samsung launched the world's first 3D TV based on PDP. However, the data scanning of panel and LC's response characteristics of LCD TV cause interference among frames (that is crosstalk), and this makes 3D video quality worse. We propose the method to reduce crosstalk by LCD driving and backlight control of FHD 3D LCD TV.

  7. Imaging of 3-D seismic velocity structure of Southern Sumatra region using double difference tomographic method

    SciTech Connect

    Lestari, Titik; Nugraha, Andri Dian

    2015-04-24

    Southern Sumatra region has a high level of seismicity due to the influence of the subduction system, Sumatra fault, Mentawai fault and stretching zone activities. The seismic activities of Southern Sumatra region are recorded by Meteorological Climatological and Geophysical Agency (MCGA’s) Seismograph network. In this study, we used earthquake data catalog compiled by MCGA for 3013 events from 10 seismic stations around Southern Sumatra region for time periods of April 2009 – April 2014 in order to invert for the 3-D seismic velocities structure (Vp, Vs, and Vp/Vs ratio). We applied double-difference seismic tomography method (tomoDD) to determine Vp, Vs and Vp/Vs ratio with hypocenter adjustment. For the inversion procedure, we started from the initial 1-D seismic velocity model of AK135 and constant Vp/Vs of 1.73. The synthetic travel time from source to receiver was calculated using ray pseudo-bending technique, while the main tomographic inversion was applied using LSQR method. The resolution model was evaluated using checkerboard test and Derivative Weigh Sum (DWS). Our preliminary results show low Vp and Vs anomalies region along Bukit Barisan which is may be associated with weak zone of Sumatran fault and migration of partial melted material. Low velocity anomalies at 30-50 km depth in the fore arc region may indicated the hydrous material circulation because the slab dehydration. We detected low seismic seismicity in the fore arc region that may be indicated as seismic gap. It is coincides contact zone of high and low velocity anomalies. And two large earthquakes (Jambi and Mentawai) also occurred at the contact of contrast velocity.

  8. 3D micro profile measurement with the method of spatial frequency domain analysis

    NASA Astrophysics Data System (ADS)

    Xu, Yongxiang

    2015-10-01

    3D micro profiles are often needed for measurement in many fields, e.g., binary optics, electronic industry, mechanical manufacturing, aeronautic and space industry, etc. In the case where height difference between two neighboring points of a test profile is equal to or greater than λ / 4, microscopic interferometry based on laser source will no longer be applicable because of the uncertainty in phase unwrapping. As white light possesses the characteristic of interference length approximate to zero, applying it for micro profilometry can avoid the trouble and can yield accurate results. Using self-developed Mirau-type scanning interference microscope, a step-like sample was tested twice, with 128 scanning interferograms recorded for each test. To process each set of the interferograms, the method of spatial frequency domain analysis was adopted. That is, for each point, by use of Furrier transform, white-light interference intensities were decomposed in spatial frequency domain, thus obtaining phase values corresponding to different wavenumbers; by using least square fitting on phases and wave numbers, a group-velocity OPD was gained for the very point; and finally in terms of the relation between relative height and the group-velocity OPD, the profile of the test sample was obtained. Two tests yielded same profile result for the sample, and step heights obtained were 50.88 nm and 50.94 nm, respectively. Meantime, the sample was also measured with a Zygo Newview 7200 topography instrument, with same profile result obtained and step height differing by 0.9 nm. In addition, data processing results indicate that chromatic dispersion equal to and higher than 2nd order is negligible when applying spatial frequency domain analysis method.

  9. Validation of computational fluid dynamics methods with anatomically exact, 3D printed MRI phantoms and 4D pcMRI.

    PubMed

    Anderson, Jeff R; Diaz, Orlando; Klucznik, Richard; Zhang, Y Jonathan; Britz, Gavin W; Grossman, Robert G; Lv, Nan; Huang, Qinghai; Karmonik, Christof

    2014-01-01

    A new concept of rapid 3D prototyping was implemented using cost-effective 3D printing for creating anatomically correct replica of cerebral aneurysms. With a dedicated flow loop set-up in a full body human MRI scanner, flow measurements were performed using 4D phase contrast magnetic resonance imaging to visualize and quantify intra-aneurysmal flow patterns. Ultrashort TE sequences were employed to obtain high-resolution 3D image data to visualize the lumen inside the plastic replica. In-vitro results were compared with retrospectively obtained in-vivo data and results from computational fluid dynamics simulations (CFD). Rapid prototyping of anatomically realistic 3D models may have future impact in treatment planning, design of image acquisition methods for MRI and angiographic systems and for the design and testing of advanced image post-processing technologies.

  10. Joint Cross-Range Scaling and 3D Geometry Reconstruction of ISAR Targets Based on Factorization Method.

    PubMed

    Lei Liu; Feng Zhou; Xue-Ru Bai; Ming-Liang Tao; Zi-Jing Zhang

    2016-04-01

    Traditionally, the factorization method is applied to reconstruct the 3D geometry of a target from its sequential inverse synthetic aperture radar images. However, this method requires performing cross-range scaling to all the sub-images and thus has a large computational burden. To tackle this problem, this paper proposes a novel method for joint cross-range scaling and 3D geometry reconstruction of steadily moving targets. In this method, we model the equivalent rotational angular velocity (RAV) by a linear polynomial with time, and set its coefficients randomly to perform sub-image cross-range scaling. Then, we generate the initial trajectory matrix of the scattering centers, and solve the 3D geometry and projection vectors by the factorization method with relaxed constraints. After that, the coefficients of the polynomial are estimated from the projection vectors to obtain the RAV. Finally, the trajectory matrix is re-scaled using the estimated rotational angle, and accurate 3D geometry is reconstructed. The two major steps, i.e., the cross-range scaling and the factorization, are performed repeatedly to achieve precise 3D geometry reconstruction. Simulation results have proved the effectiveness and robustness of the proposed method.

  11. A continuous surface reconstruction method on point cloud captured from a 3D surface photogrammetry system

    SciTech Connect

    Liu, Wenyang; Cheung, Yam; Sabouri, Pouya; Arai, Tatsuya J.; Sawant, Amit; Ruan, Dan

    2015-11-15

    achieved submillimeter reconstruction RMSE under different configurations, demonstrating quantitatively the faith of the proposed method in preserving local structural properties of the underlying surface in the presence of noise and missing measurements, and its robustness toward variations of such characteristics. On point clouds from the human subject, the proposed method successfully reconstructed all patient surfaces, filling regions where raw point coordinate readings were missing. Within two comparable regions of interest in the chest area, similar mean curvature distributions were acquired from both their reconstructed surface and CT surface, with mean and standard deviation of (μ{sub recon} = − 2.7 × 10{sup −3} mm{sup −1}, σ{sub recon} = 7.0 × 10{sup −3} mm{sup −1}) and (μ{sub CT} = − 2.5 × 10{sup −3} mm{sup −1}, σ{sub CT} = 5.3 × 10{sup −3} mm{sup −1}), respectively. The agreement of local geometry properties between the reconstructed surfaces and the CT surface demonstrated the ability of the proposed method in faithfully representing the underlying patient surface. Conclusions: The authors have integrated and developed an accurate level-set based continuous surface reconstruction method on point clouds acquired by a 3D surface photogrammetry system. The proposed method has generated a continuous representation of the underlying phantom and patient surfaces with good robustness against noise and missing measurements. It serves as an important first step for further development of motion tracking methods during radiotherapy.

  12. 3D Discontinuous Galerkin elastic seismic wave modeling based upon a grid injection method

    NASA Astrophysics Data System (ADS)

    Monteiller, V.

    2015-12-01

    Full waveform inversion (FWI) is a seismic imaging method that estimates thesub-surface physical properties with a spatial resolution of the order of thewavelength. FWI is generally recast as the iterative optimization of anobjective function that measures the distance between modeled and recordeddata. In the framework of local descent methods, FWI requires to perform atleast two seismic modelings per source and per FWI iteration.Due to the resulting computational burden, applications of elastic FWI have been usuallyrestricted to 2D geometries. Despite the continuous growth of high-performancecomputing facilities, application of 3D elastic FWI to real-scale problemsremain computationally too expensive. To perform elastic seismic modeling with a reasonable amount of time, weconsider a reduced computational domain embedded in a larger background modelin which seismic sources are located. Our aim is to compute repeatedly thefull wavefield in the targeted domain after model alteration, once theincident wavefield has been computed once for all in the background model. Toachieve this goal, we use a grid injection method referred to as the Total-Field/Scattered-Field (TF/SF) technique in theelectromagnetic community. We implemented the Total-Field/Scattered-Field approach in theDiscontinuous Galerkin Finite Element method (DG-FEM) that is used to performmodeling in the local domain. We show how to interface the DG-FEM with any modeling engine (analytical solution, finite difference or finite elements methods) that is suitable for the background simulation. One advantage of the Total-Field/Scattered-Field approach is related to thefact that the scattered wavefield instead of the full wavefield enter thePMLs, hence making more efficient the absorption of the outgoing waves at theouter edges of the computational domain. The domain reduction in which theDG-FEM is applied allows us to use modest computational resources opening theway for high-resolution imaging by full

  13. Ultrasound and 3D Skin Imaging: Methods to Evaluate Efficacy of Striae Distensae Treatment

    PubMed Central

    Bleve, Mariella; Capra, Priscilla; Pavanetto, Franca; Perugini, Paola

    2012-01-01

    Background. Over time, the striae rubra develop into striae alba that appear white, flat, and depressed. It is very important to determine the optimum striae management. In order to evaluate the effectiveness of these therapies, objective measurement tools are necessary. Objective. The aim of this study is to evaluate if ultrasonography and PRIMOS can be used to obtain an objective assessment of stretch marks type and stage; furthermore, we aim to apply these techniques to evaluate the efficacy of a topical treatment. Methods. 20 volunteers were enrolled with a two-month study. A marketed cosmetic product was used as the active over one body area. The controlateral area with stretch marks was treated with a “placebo” formulation without active, as a control. The instrumental evaluation was carried out at the beginning of the trial (baseline values or t0), after 1 month (t1), and at the end of the study (t2). Results. PRIMOS was able to measure and document striae distensae maturation; furthermore, ultrasound imaging permitted to visualize and diagnose the striae. Statistical analysis of skin roughness demonstrated a statistically significant reduction of Rp value only in a treated group. In fact, the Rp value represented a maximum peak height in the area selected. These results demonstrated that after two months of treatment only the striae rubra can be treated successfully. Conclusions. This work demonstrated that the 22MHz ultrasound can diagnose stretch marks; PRIMOS device can detect and measure striae distensae type and maturation. Furthermore, the high-frequency ultrasound and the 3D image device, described in this work, can be successfully employed in order to evaluate the efficacy of a topical treatment. PMID:22203840

  14. 3D Magnetic Field Configuration of the 2006 December 13 Flare Extrapolated with the Optimization Method

    NASA Astrophysics Data System (ADS)

    Guo, Y.; Ding, M. D.; Wiegelmann, T.; Li, H.

    2008-06-01

    The photospheric vector magnetic field of the active region NOAA 10930 was obtained with the Solar Optical Telescope (SOT) on board the Hinode satellite with a very high spatial resolution (about 0.3''). Observations of the two-ribbon flare on 2006 December 13 in this active region provide us a good sample to study the magnetic field configuration related to the occurrence of the flare. Using the optimization method for nonlinear force-free field (NLFFF) extrapolation proposed by Wheatland et al. and recently developed by Wiegelmann, we derive the three-dimensional (3D) vector magnetic field configuration associated with this flare. The general topology can be described as a highly sheared core field and a quasi-potential envelope arch field. The core field clearly shows some dips supposed to sustain a filament. Free energy release in the flare, calculated by subtracting the energy contained in the NLFFF and the corresponding potential field, is 2.4 × 1031 ergs, which is ~2% of the preflare potential field energy. We also calculate the shear angles, defined as the angles between the NLFFF and potential field, and find that they become larger at some particular sites in the lower atmosphere, while they become significantly smaller in most places, implying that the whole configuration gets closer to the potential field after the flare. The Ca II H line images obtained with the Broadband Filter Imager (BFI) of the SOT and the 1600 Å images with the Transition Region and Coronal Explorer (TRACE) show that the preflare heating occurs mainly in the core field. These results provide evidence in support of the tether-cutting model of solar flares.

  15. Identifying Key Structural Features and Spatial Relationships in Archean Microbialites Using 2D and 3D Visualization Methods

    NASA Astrophysics Data System (ADS)

    Stevens, E. W.; Sumner, D. Y.

    2009-12-01

    Microbialites in the 2521 ± 3 Ma Gamohaan Formation, South Africa, have several different end-member morphologies which show distinct growth structures and spatial relationships. We characterized several growth structures and spatial relationships in two samples (DK20 and 2_06) using a combination of 2D and 3D analytical techniques. There are two main goals in studying complicated microbialites with a combination of 2D and 3D methods. First, one can better understand microbialite growth by identifying important structures and structural relationships. Once structures are identified, the order in which the structures formed and how they are related can be inferred from observations of crosscutting relationships. Second, it is important to use both 2D and 3D methods to correlate 3D observations with those in 2D that are more common in the field. Combining analysis provides significantly more insight into the 3D morphology of microbial structures. In our studies, 2D analysis consisted of describing polished slabs and serial sections created by grinding down the rock 100 microns at a time. 3D analysis was performed on serial sections visualized in 3D using Vrui and 3DVisualizer software developed at KeckCAVES, UCD (http://keckcaves.org). Data were visualized on a laptop and in an immersive cave system. Both samples contain microbial laminae and more vertically orients microbial "walls" called supports. The relationships between these features created voids now filled with herringbone and blocky calcite crystals. DK20, a classic plumose structure, contains two types of support structures. Both are 1st order structures (1st order structures with organic inclusions and 1st without organic inclusions) interpreted as planar features based on 2D analysis. In the 2D analysis the 1st order structures show v branching relationships as well as single cuspate relationships (two 1st order structures with inclusions merging upward), and single tented relationships (three supports

  16. Advanced 3D Poisson solvers and particle-in-cell methods for accelerator modeling

    NASA Astrophysics Data System (ADS)

    Serafini, David B.; McCorquodale, Peter; Colella, Phillip

    2005-01-01

    We seek to improve on the conventional FFT-based algorithms for solving the Poisson equation with infinite-domain (open) boundary conditions for large problems in accelerator modeling and related areas. In particular, improvements in both accuracy and performance are possible by combining several technologies: the method of local corrections (MLC); the James algorithm; and adaptive mesh refinement (AMR). The MLC enables the parallelization (by domain decomposition) of problems with large domains and many grid points. This improves on the FFT-based Poisson solvers typically used as it doesn't require the all-to-all communication pattern that parallel 3d FFT algorithms require, which tends to be a performance bottleneck on current (and foreseeable) parallel computers. In initial tests, good scalability up to 1000 processors has been demonstrated for our new MLC solver. An essential component of our approach is a new version of the James algorithm for infinite-domain boundary conditions for the case of three dimensions. By using a simplified version of the fast multipole method in the boundary-to-boundary potential calculation, we improve on the performance of the Hockney algorithm typically used by reducing the number of grid points by a factor of 8, and the CPU costs by a factor of 3. This is particularly important for large problems where computer memory limits are a consideration. The MLC allows for the use of adaptive mesh refinement, which reduces the number of grid points and increases the accuracy in the Poisson solution. This improves on the uniform grid methods typically used in PIC codes, particularly in beam problems where the halo is large. Also, the number of particles per cell can be controlled more closely with adaptivity than with a uniform grid. To use AMR with particles is more complicated than using uniform grids. It affects depositing particles on the non-uniform grid, reassigning particles when the adaptive grid changes and maintaining the load

  17. A 3D similarity method for scaffold hopping from known drugs or natural ligands to new chemotypes.

    PubMed

    Jenkins, Jeremy L; Glick, Meir; Davies, John W

    2004-12-01

    A primary goal of 3D similarity searching is to find compounds with similar bioactivity to a reference ligand but with different chemotypes, i.e., "scaffold hopping". However, an adequate description of chemical structures in 3D conformational space is difficult due to the high-dimensionality of the problem. We present an automated method that simplifies flexible 3D chemical descriptions in which clustering techniques traditionally used in data mining are exploited to create "fuzzy" molecular representations called FEPOPS (feature point pharmacophores). The representations can be used for flexible 3D similarity searching given one or more active compounds without a priori knowledge of bioactive conformations or pharmacophores. We demonstrate that similarity searching with FEPOPS significantly enriches for actives taken from in-house high-throughput screening datasets and from MDDR activity classes COX-2, 5-HT3A, and HIV-RT, while also scaffold or ring-system hopping to new chemical frameworks. Further, inhibitors of target proteins (dopamine 2 and retinoic acid receptor) are recalled by FEPOPS by scaffold hopping from their associated endogenous ligands (dopamine and retinoic acid). Importantly, the method excels in comparison to commonly used 2D similarity methods (DAYLIGHT, MACCS, Pipeline Pilot fingerprints) and a commercial 3D method (Pharmacophore Distance Triplets) at finding novel scaffold classes given a single query molecule.

  18. 3D Monitoring under the Keciova Mosque (Casbah-Algier, Algeria) with Ground Penetrating Radar Method

    NASA Astrophysics Data System (ADS)

    Kadioglu, Selma; Kagan Kadioglu, Yusuf; Deniz, Kiymet; Akin Akyol, Ali

    2014-05-01

    Keciova (Ketchaoua) Mosque, in Casbah-Algiers, the capital of Algeria, is a UNESCO World Heritage Site. Keciova Mosque was originally built in 1612 by the Ottoman Empire. A RAMAC CU II GPR system and a 250 MHz shielded antenna have been employed inside of the Mosque including the Cathedral and inside of the burial chambers under the Cathedral Site on parallel profiles spaced approximately 0.30 m apart to measure data. After applying standard two-dimensional (2D) and three dimensional (3D) imaging techniques, transparent 3D imaging techniques have been used to photograph the foundational infrastructures, buried remains and safety problems of the Mosque. The results showed that we obtained 3D GPR visualization until 12.0 m in depth. Firstly we imaged the base floor including corridors. Then we monitored buried remains under the first ground level between 5.0-7.0 m in depths. Finally we indicated 3D GPR photographs a spectacular protected buried old mosque structures under the second ground level between 9.0-12.0 m in depths. This project has been supported by Republic of Turkey Prime Ministry Turkish Cooperation and Coordination Agency (TIKA). This study is a contribution to the EU funded COST action TU1208, "Civil Engineering Applications of Ground penetrating Radar".

  19. Some Methods of Applied Numerical Analysis to 3d Facial Reconstruction Software

    NASA Astrophysics Data System (ADS)

    Roşu, Şerban; Ianeş, Emilia; Roşu, Doina

    2010-09-01

    This paper deals with the collective work performed by medical doctors from the University Of Medicine and Pharmacy Timisoara and engineers from the Politechnical Institute Timisoara in the effort to create the first Romanian 3d reconstruction software based on CT or MRI scans and to test the created software in clinical practice.

  20. Comparison of traditional methods with 3D computer models in the instruction of hepatobiliary anatomy.

    PubMed

    Keedy, Alexander W; Durack, Jeremy C; Sandhu, Parmbir; Chen, Eric M; O'Sullivan, Patricia S; Breiman, Richard S

    2011-01-01

    This study was designed to determine whether an interactive three-dimensional presentation depicting liver and biliary anatomy is more effective for teaching medical students than a traditional textbook format presentation of the same material. Forty-six medical students volunteered for participation in this study. Baseline demographic information, spatial ability, and knowledge of relevant anatomy were measured. Participants were randomized into two groups and presented with a computer-based interactive learning module comprised of animations and still images to highlight various anatomical structures (3D group), or a computer-based text document containing the same images and text without animation or interactive features (2D group). Following each teaching module, students completed a satisfaction survey and nine-item anatomic knowledge post-test. The 3D group scored higher on the post-test than the 2D group, with a mean score of 74% and 64%, respectively; however, when baseline differences in pretest scores were accounted for, this difference was not statistically significant (P = 0.33). Spatial ability did not statistically significantly correlate with post-test scores for the 3D group or the 2D group. In the post-test satisfaction survey the 3D group expressed a statistically significantly higher overall satisfaction rating compared to students in the 2D control group (4.5 versus 3.7 out of 5, P = 0.02). While the interactive 3D multimedia module received higher satisfaction ratings from students, it neither enhanced nor inhibited learning of complex hepatobiliary anatomy compared to an informationally equivalent traditional textbook style approach. .

  1. Methods for obtaining 3D training images for multiple-point statistics simulations: a comparative study

    NASA Astrophysics Data System (ADS)

    Jha, S. K.; Comunian, A.; Mariethoz, G.; Kelly, B. F.

    2013-12-01

    In recent years, multiple-point statistics (MPS) has been used in several studies for characterizing facies heterogeneity in geological formations. MPS uses a conceptual representation of the expected facies distribution, called a Training image (TI), to generate patterns of facies heterogeneity. In two-dimensional (2D) simulations the TI can be a hand-drawn image, an analogue outcrop image, or derived from geological reconstructions using a combination of geological analogues and geophysical data. However, obtaining suitable TI in three-dimensions (3D) from geological analogues or geophysical data is harder and has limited the use of MPS for simulating facies heterogeneity in 3D. There have been attempts to generate 3D training images using object-based simulation (OBS). However, determining suitable values for the large number of parameters required by OBS is often challenging. In this study, we compare two approaches for generating three-dimensional training images to model a valley filling sequence deposited by meandering rivers. The first approach is based on deriving statistical information from two-dimensional TIs. The 3D domain is simulated with a sequence of 2D MPS simulation steps, performed along different directions on slices of the 3D domain. At each 2D simulation step, the facies simulated at the previous steps that lie on the current 2D slice are used as conditioning data. The second approach uses hand-drawn two-dimensional TIs and produces complex patterns resembling the geological structures by applying rotation and affinity transformations in the facies simulation. The two techniques are compared using transition probabilities, facies proportions, and connectivity metrics. In the presentation we discuss the benefits of each approach for generating three-dimensional facies models.

  2. 3D Hot Test Simulations of a 220 GHz Folded Waveguide Traveling Wave Tube Using a CFDTD PIC Method

    NASA Astrophysics Data System (ADS)

    Lin, Ming-Chieh; Song, Heather

    2015-11-01

    Millimeter or sub-THz wave sources centered at 220 GHz is of interest due to the potential for its commercial and military applications including high resolution radar, remote sensing, and high-data-rate communications. It has been demonstrated via 3D cold test finite element method (FEM) simulations that a folded waveguide traveling wave tube (FWTWT) can be designed and optimized at this frequency range with a small signal gain of 18 dB over a comparatively broad (-3 dB) bandwidth of ~ 10%. On the other hand, 3D hot test simulations of a V-band ladder TWT have been successfully demonstrated using a conformal finite-difference time-domain (CFDTD) particle-in-cell (PIC) method for center frequency of 50 GHz. In the present work, the 220 GHz FWTWT designs have been reviewed and studied. 3D Cold test simulations using both the CFDTD and FEM methods have been carried out and compared with each other as basis for 3D hot test CFDTD PIC simulations. The preliminary simulation result shows that the gain-bandwidth features at 220 GHz are achievable while carefully avoiding beam interceptions. Our study shows that the interaction characteristics are very sensitive to the operating beam parameters. Detail simulation results and discussions will be presented.

  3. A Systematic Design Method for 3-D Grid Multiscroll Chaotic Attractors and Its Circuit Implementation Employing CFOAs

    NASA Astrophysics Data System (ADS)

    Wu, Xianming; He, Yigang

    A systematic design method for 3-D grid multiscroll chaotic attractors by using staircase nonlinear functions (SNFs) is proposed in this paper. Equations of parameters for 3-D grid multiscroll chaotic attractors are derived in the consideration of the dynamic range for the active device and the number of multiscroll chaotic attractors. 5 × 4 and 4 × 3 of 3-D grid multiscroll chaotic attractors are generated by this method. A chaotic circuit is designed only using current feedback operational amplifiers (CFOAs). The circuit consists of three integrators and two nonlinear circuits. The parameters of the circuit are calculated by the parameters of 3-D grid multiscroll chaotic attractors. The circuit can generate 3-D grid multiscroll chaotic attractors. The central frequency of the circuit is higher with fewer active devices and simpler circuit construction for the good frequency characteristic and port characteristic of the CFOA. Numerical simulation results and the circuit simulation results show that the method is feasible and the designed circuit is correct.

  4. A method for simultaneously delineating multiple targets in 3D-FISH using limited channels, lasers, and fluorochromes.

    PubMed

    Zhao, F Y; Yang, X; Chen, D Y; Ma, W Y; Zheng, J G; Zhang, X M

    2014-01-01

    Many studies have suggested a link between the spatial organization of genomes and fundamental biological processes such as genome reprogramming, gene expression, and differentiation. Multicolor fluorescence in situ hybridization on three-dimensionally preserved nuclei (3D-FISH), in combination with confocal microscopy, has become an effective technique for analyzing 3D genome structure and spatial patterns of defined nucleus targets including entire chromosome territories and single gene loci. This technique usually requires the simultaneous visualization of numerous targets labeled with different colored fluorochromes. Thus, the number of channels and lasers must be sufficient for the commonly used labeling scheme of 3D-FISH, "one probe-one target". However, these channels and lasers are usually restricted by a given microscope system. This paper presents a method for simultaneously delineating multiple targets in 3D-FISH using limited channels, lasers, and fluorochromes. In contrast to other labeling schemes, this method is convenient and simple for multicolor 3D-FISH studies, which may result in widespread adoption of the technique. Lastly, as an application of the method, the nucleus locations of chromosome territory 18/21 and centromere 18/21/13 in normal human lymphocytes were analyzed, which might present evidence of a radial higher order chromatin arrangement.

  5. SIMULATIONS OF 2D AND 3D THERMOCAPILLARY FLOWS BY A LEAST-SQUARES FINITE ELEMENT METHOD. (R825200)

    EPA Science Inventory

    Numerical results for time-dependent 2D and 3D thermocapillary flows are presented in this work. The numerical algorithm is based on the Crank-Nicolson scheme for time integration, Newton's method for linearization, and a least-squares finite element method, together with a matri...

  6. A Comparison of Methods for Decoupling Tongue and Lower Lip from Jaw Movements in 3D Articulography

    ERIC Educational Resources Information Center

    Henriques, Rafael Neto; van Lieshout, Pascal

    2013-01-01

    Purpose: One popular method to study the motion of oral articulators is 3D electromagnetic articulography. For many studies, it is important to use an algorithm to decouple the motion of the tongue and the lower lip from the motion of the mandible. In this article, the authors describe and compare 4 methods for decoupling jaw motion by using 3D…

  7. Program impact evaluation using a matching method with panel data.

    PubMed

    Nguyen, Viet Cuong

    2012-03-15

    Difference-in-differences with matching is a popular method to measure the impact of an intervention in health and social sciences. This method requires baseline data, that is, data before interventions, which are not always available in reality. Instead, panel data with two time periods are often collected after interventions begin. In this paper, a simple matching method is proposed to measure the impact of an intervention using two-period panel data after the intervention. The method is illustrated by the measurement of the effect of health insurance in Vietnam using household panel data. PMID:22161687

  8. In situ growth of manganese oxide on 3D graphene by a reverse microemulsion method for supercapacitors

    NASA Astrophysics Data System (ADS)

    Wei, Bing; Wang, Lidong; Wang, Yang; Yuan, Yinan; Miao, Qinghua; Yang, Ziyue; Fei, Weidong

    2016-03-01

    In this study, a new, effective strategy is reported for the fabrication of composites using manganese oxide (MnO2) grown in situ on three-dimensional (3D) graphene by the reverse microemulsion (water-in-oil) method. A uniform coating of nanoscale MnO2 layers can be observed on the internal surface of 3D graphene, which could benefit rapid ionic and electronic transport. The electrochemical performance of the MnO2/3D graphene composites is optimized by the control of the composite structure and mass loading of MnO2. The MnO2/3D graphene composite thus prepared exhibits a significantly high specific capacitance of 659.7 F g-1 at 0.3 A g-1 and an excellent retention life of 106% after 1000 cycles. The facile synthesis and excellent electrochemical performance of the MnO2/3D graphene composites indicate that the developed method demonstrates potential applications for the fabrication of novel electrode materials for use in energy storage devices.

  9. Geometrically-compatible 3-D Monte Carlo and discrete-ordinates methods

    SciTech Connect

    Morel, J.E.; Wareing, T.A.; McGhee, J.M.; Evans, T.M.

    1998-12-31

    This is the final report of a three-year, Laboratory Directed Research and Development (LDRD) project at the Los Alamos National Laboratory (LANL). The purpose of this project was two-fold. The first purpose was to develop a deterministic discrete-ordinates neutral-particle transport scheme for unstructured tetrahedral spatial meshes, and implement it in a computer code. The second purpose was to modify the MCNP Monte Carlo radiation transport code to use adjoint solutions from the tetrahedral-mesh discrete-ordinates code to reduce the statistical variance of Monte Carlo solutions via a weight-window approach. The first task has resulted in a deterministic transport code that is much more efficient for modeling complex 3-D geometries than any previously existing deterministic code. The second task has resulted in a powerful new capability for dramatically reducing the cost of difficult 3-D Monte Carlo calculations.

  10. Remote measurement methods for 3-D modeling purposes using BAE Systems' Software

    NASA Astrophysics Data System (ADS)

    Walker, Stewart; Pietrzak, Arleta

    2015-06-01

    Efficient, accurate data collection from imagery is the key to an economical generation of useful geospatial products. Incremental developments of traditional geospatial data collection and the arrival of new image data sources cause new software packages to be created and existing ones to be adjusted to enable such data to be processed. In the past, BAE Systems' digital photogrammetric workstation, SOCET SET®, met fin de siècle expectations in data processing and feature extraction. Its successor, SOCET GXP®, addresses today's photogrammetric requirements and new data sources. SOCET GXP is an advanced workstation for mapping and photogrammetric tasks, with automated functionality for triangulation, Digital Elevation Model (DEM) extraction, orthorectification and mosaicking, feature extraction and creation of 3-D models with texturing. BAE Systems continues to add sensor models to accommodate new image sources, in response to customer demand. New capabilities added in the latest version of SOCET GXP facilitate modeling, visualization and analysis of 3-D features.

  11. Optimization of site characterization and remediation methods using 3-D geoscience modeling and visualization techniques

    SciTech Connect

    Hedegaard, R.F.; Ho, J.; Eisert, J.

    1996-12-31

    Three-dimensional (3-D) geoscience volume modeling can be used to improve the efficiency of the environmental investigation and remediation process. At several unsaturated zone spill sites at two Superfund (CERCLA) sites (Military Installations) in California, all aspects of subsurface contamination have been characterized using an integrated computerized approach. With the aide of software such as LYNX GMS{trademark}, Wavefront`s Data Visualizer{trademark} and Gstools (public domain), the authors have created a central platform from which to map a contaminant plume, visualize the same plume three-dimensionally, and calculate volumes of contaminated soil or groundwater above important health risk thresholds. The developed methodology allows rapid data inspection for decisions such that the characterization process and remedial action design are optimized. By using the 3-D geoscience modeling and visualization techniques, the technical staff are able to evaluate the completeness and spatial variability of the data and conduct 3-D geostatistical predictions of contaminant and lithologic distributions. The geometry of each plume is estimated using 3-D variography on raw analyte values and indicator thresholds for the kriged model. Three-dimensional lithologic interpretation is based on either {open_quote}linked{close_quote} parallel cross sections or on kriged grid estimations derived from borehole data coded with permeability indicator thresholds. Investigative borings, as well as soil vapor extraction/injection wells, are sighted and excavation costs are estimated using these results. The principal advantages of the technique are the efficiency and rapidity with which meaningful results are obtained and the enhanced visualization capability which is a desirable medium to communicate with both the technical staff as well as nontechnical audiences.

  12. A highly heterogeneous 3D PWR core benchmark: deterministic and Monte Carlo method comparison

    NASA Astrophysics Data System (ADS)

    Jaboulay, J.-C.; Damian, F.; Douce, S.; Lopez, F.; Guenaut, C.; Aggery, A.; Poinot-Salanon, C.

    2014-06-01

    Physical analyses of the LWR potential performances with regards to the fuel utilization require an important part of the work dedicated to the validation of the deterministic models used for theses analyses. Advances in both codes and computer technology give the opportunity to perform the validation of these models on complex 3D core configurations closed to the physical situations encountered (both steady-state and transient configurations). In this paper, we used the Monte Carlo Transport code TRIPOLI-4®; to describe a whole 3D large-scale and highly-heterogeneous LWR core. The aim of this study is to validate the deterministic CRONOS2 code to Monte Carlo code TRIPOLI-4®; in a relevant PWR core configuration. As a consequence, a 3D pin by pin model with a consistent number of volumes (4.3 millions) and media (around 23,000) is established to precisely characterize the core at equilibrium cycle, namely using a refined burn-up and moderator density maps. The configuration selected for this analysis is a very heterogeneous PWR high conversion core with fissile (MOX fuel) and fertile zones (depleted uranium). Furthermore, a tight pitch lattice is selcted (to increase conversion of 238U in 239Pu) that leads to harder neutron spectrum compared to standard PWR assembly. In these conditions two main subjects will be discussed: the Monte Carlo variance calculation and the assessment of the diffusion operator with two energy groups for the core calculation.

  13. Integrated 3-D quality control of geological interpretation through the use of simple methods and programs

    SciTech Connect

    Chatellier, J.Y.; Gustavo, F.; Magaly, Q.

    1996-12-31

    Integrating different petroleum geology disciplines gives insight and help in analyzing data and in checking the quality of different interpretations. Simple approaches and affordable programs allow rapid visualization of data in 3-D. Displaying geological data from stratigraphy, diagenesis, and structural geology together, allows identification of anomalies (i.e. development targets) and often gives clues of the controlling processes. Four case studies from world class fields are used to illustrate the vital need to integrate quality control of interpretation across disciplines. Distribution of diagenetic alterations is revealed by visualizing diagenetic and petrographic data against faults in a 3-D statistical program. Faults are transferred from 3-D seismic into such a program and then analyzed against other data. Fault intersections wrongly correlated are also easily picked. Other powerful tools include a modified use of the Bischke Plots that allow the identification of missing sections previously identified as fault cut-outs. The quality of interpretation has sometimes been assessed from the presence of stacked anomalies of various expression. In other cases repeated unexpected isopach trends revealed subtle faults such as riedels sealing and compartmentizing the reservoirs. Occasionally the timing of fault reactivation was assessed precisely whereas all other techniques failed even to identify these hidden features. Unrecognized porosity-depth trends were identified after filtering data for stratigraphy or sedimentology and studying it in its geographical and tectonic context. Three dimensional visualization was needed in cases of quartz overgrowth where grain size, depth, stratigraphy and location with respect to faults were all important.

  14. Integrated 3-D quality control of geological interpretation through the use of simple methods and programs

    SciTech Connect

    Chatellier, J.Y.; Gustavo, F.; Magaly, Q. )

    1996-01-01

    Integrating different petroleum geology disciplines gives insight and help in analyzing data and in checking the quality of different interpretations. Simple approaches and affordable programs allow rapid visualization of data in 3-D. Displaying geological data from stratigraphy, diagenesis, and structural geology together, allows identification of anomalies (i.e. development targets) and often gives clues of the controlling processes. Four case studies from world class fields are used to illustrate the vital need to integrate quality control of interpretation across disciplines. Distribution of diagenetic alterations is revealed by visualizing diagenetic and petrographic data against faults in a 3-D statistical program. Faults are transferred from 3-D seismic into such a program and then analyzed against other data. Fault intersections wrongly correlated are also easily picked. Other powerful tools include a modified use of the Bischke Plots that allow the identification of missing sections previously identified as fault cut-outs. The quality of interpretation has sometimes been assessed from the presence of stacked anomalies of various expression. In other cases repeated unexpected isopach trends revealed subtle faults such as riedels sealing and compartmentizing the reservoirs. Occasionally the timing of fault reactivation was assessed precisely whereas all other techniques failed even to identify these hidden features. Unrecognized porosity-depth trends were identified after filtering data for stratigraphy or sedimentology and studying it in its geographical and tectonic context. Three dimensional visualization was needed in cases of quartz overgrowth where grain size, depth, stratigraphy and location with respect to faults were all important.

  15. Ground motion simulations in Marmara (Turkey) region from 3D finite difference method

    NASA Astrophysics Data System (ADS)

    Aochi, Hideo; Ulrich, Thomas; Douglas, John

    2016-04-01

    In the framework of the European project MARSite (2012-2016), one of the main contributions from our research team was to provide ground-motion simulations for the Marmara region from various earthquake source scenarios. We adopted a 3D finite difference code, taking into account the 3D structure around the Sea of Marmara (including the bathymetry) and the sea layer. We simulated two moderate earthquakes (about Mw4.5) and found that the 3D structure improves significantly the waveforms compared to the 1D layer model. Simulations were carried out for different earthquakes (moderate point sources and large finite sources) in order to provide shake maps (Aochi and Ulrich, BSSA, 2015), to study the variability of ground-motion parameters (Douglas & Aochi, BSSA, 2016) as well as to provide synthetic seismograms for the blind inversion tests (Diao et al., GJI, 2016). The results are also planned to be integrated in broadband ground-motion simulations, tsunamis generation and simulations of triggered landslides (in progress by different partners). The simulations are freely shared among the partners via the internet and the visualization of the results is diffused on the project's homepage. All these simulations should be seen as a reference for this region, as they are based on the latest knowledge that obtained during the MARSite project, although their refinement and validation of the model parameters and the simulations are a continuing research task relying on continuing observations. The numerical code used, the models and the simulations are available on demand.

  16. SU-E-T-316: The Design of a Risk Index Method for 3D Patient Specific QA

    SciTech Connect

    Cho, W; Wu, H; Xing, L; Suh, T

    2014-06-01

    Purpose: To suggest a new guidance for the evaluation of 3D patient specific QA, a structure-specific risk-index (RI) method was designed and implemented. Methods: A new algorithm was designed to assign the score of Pass, Fail or Pass with Risk to all 3D voxels in each structure by improving a conventional Gamma Index (GI) algorithm, which implied the degree of the risk of under-dose to the treatment target or over-dose to the organ at risks (OAR). Structure-specific distance to agreement (DTOA), dose difference and minimum checkable dose were applied to the GI algorithm, and additional parameters such as dose gradient factor and dose limit of structures were used to the RI method. Maximum passing rate (PR) and minimum PR were designed and calculated for each structure with the RI method. 3D doses were acquired from a spine SBRT plan by simulating the shift of beam iso-center, and tested to show the feasibility of the suggested method. Results: When the iso-center was shifted by 1 mm, 2 mm, and 3 mm, the PR of conventional GI method between shifted and non-shifted 3D doses were 99.9%, 97.4%, and 89.7% for PTV, 99.8%, 84.8%, and 63.2% for spinal cord, and 100%, 99.5%, 91.7% for right lung. The minimum PRs from the RI method were 98.9%, 96.9%, and 89.5% for PTV, and 96.1%, 79.3%, 57.5% for spinal cord, and 92.5%, 92.0%, 84.4% for right lung, respectively. The maximum PRs from the RI method were equal or less than the PRs from the conventional GI evaluation. Conclusion: Designed 3D RI method showed more strict acceptance level than the conventional GI method, especially for OARs. The RI method is expected to give the degrees of risks in the delivered doses, as well as the degrees of agreements between calculated 3D doses and measured (or simulated) 3D doses.

  17. 3D and Education

    NASA Astrophysics Data System (ADS)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  18. Automatic Building Damage Detection Method Using High-Resolution Remote Sensing Images and 3d GIS Model

    NASA Astrophysics Data System (ADS)

    Tu, Jihui; Sui, Haigang; Feng, Wenqing; Song, Zhina

    2016-06-01

    In this paper, a novel approach of building damaged detection is proposed using high resolution remote sensing images and 3D GIS-Model data. Traditional building damage detection method considers to detect damaged building due to earthquake, but little attention has been paid to analyze various building damaged types(e.g., trivial damaged, severely damaged and totally collapsed.) Therefore, we want to detect the different building damaged type using 2D and 3D feature of scenes because the real world we live in is a 3D space. The proposed method generalizes that the image geometric correction method firstly corrects the post-disasters remote sensing image using the 3D GIS model or RPC parameters, then detects the different building damaged types using the change of the height and area between the pre- and post-disasters and the texture feature of post-disasters. The results, evaluated on a selected study site of the Beichuan earthquake ruins, Sichuan, show that this method is feasible and effective in building damage detection. It has also shown that the proposed method is easily applicable and well suited for rapid damage assessment after natural disasters.

  19. Mapping 3D Strains with Ultrasound Speckle Tracking: Method Validation and Initial Results in Porcine Scleral Inflation.

    PubMed

    Cruz Perez, Benjamin; Pavlatos, Elias; Morris, Hugh J; Chen, Hong; Pan, Xueliang; Hart, Richard T; Liu, Jun

    2016-07-01

    This study aimed to develop and validate a high frequency ultrasound method for measuring distributive, 3D strains in the sclera during elevations of intraocular pressure. A 3D cross-correlation based speckle-tracking algorithm was implemented to compute the 3D displacement vector and strain tensor at each tracking point. Simulated ultrasound radiofrequency data from a sclera-like structure at undeformed and deformed states with known strains were used to evaluate the accuracy and signal-to-noise ratio (SNR) of strain estimation. An experimental high frequency ultrasound (55 MHz) system was built to acquire 3D scans of porcine eyes inflated from 15 to 17 and then 19 mmHg. Simulations confirmed good strain estimation accuracy and SNR (e.g., the axial strains had less than 4.5% error with SNRs greater than 16.5 for strains from 0.005 to 0.05). Experimental data in porcine eyes showed increasing tensile, compressive, and shear strains in the posterior sclera during inflation, with a volume ratio close to one suggesting near-incompressibility. This study established the feasibility of using high frequency ultrasound speckle tracking for measuring 3D tissue strains and its potential to characterize physiological deformations in the posterior eye. PMID:26563101

  20. An Alignment Method for the Integration of Underwater 3D Data Captured by a Stereovision System and an Acoustic Camera.

    PubMed

    Lagudi, Antonio; Bianco, Gianfranco; Muzzupappa, Maurizio; Bruno, Fabio

    2016-01-01

    The integration of underwater 3D data captured by acoustic and optical systems is a promising technique in various applications such as mapping or vehicle navigation. It allows for compensating the drawbacks of the low resolution of acoustic sensors and the limitations of optical sensors in bad visibility conditions. Aligning these data is a challenging problem, as it is hard to make a point-to-point correspondence. This paper presents a multi-sensor registration for the automatic integration of 3D data acquired from a stereovision system and a 3D acoustic camera in close-range acquisition. An appropriate rig has been used in the laboratory tests to determine the relative position between the two sensor frames. The experimental results show that our alignment approach, based on the acquisition of a rig in several poses, can be adopted to estimate the rigid transformation between the two heterogeneous sensors. A first estimation of the unknown geometric transformation is obtained by a registration of the two 3D point clouds, but it ends up to be strongly affected by noise and data dispersion. A robust and optimal estimation is obtained by a statistical processing of the transformations computed for each pose. The effectiveness of the method has been demonstrated in this first experimentation of the proposed 3D opto-acoustic camera. PMID:27089344

  1. Evaluation of Methods for Coregistration and Fusion of Rpas-Based 3d Point Clouds and Thermal Infrared Images

    NASA Astrophysics Data System (ADS)

    Hoegner, L.; Tuttas, S.; Xu, Y.; Eder, K.; Stilla, U.

    2016-06-01

    This paper discusses the automatic coregistration and fusion of 3d point clouds generated from aerial image sequences and corresponding thermal infrared (TIR) images. Both RGB and TIR images have been taken from a RPAS platform with a predefined flight path where every RGB image has a corresponding TIR image taken from the same position and with the same orientation with respect to the accuracy of the RPAS system and the inertial measurement unit. To remove remaining differences in the exterior orientation, different strategies for coregistering RGB and TIR images are discussed: (i) coregistration based on 2D line segments for every single TIR image and the corresponding RGB image. This method implies a mainly planar scene to avoid mismatches; (ii) coregistration of both the dense 3D point clouds from RGB images and from TIR images by coregistering 2D image projections of both point clouds; (iii) coregistration based on 2D line segments in every single TIR image and 3D line segments extracted from intersections of planes fitted in the segmented dense 3D point cloud; (iv) coregistration of both the dense 3D point clouds from RGB images and from TIR images using both ICP and an adapted version based on corresponding segmented planes; (v) coregistration of both image sets based on point features. The quality is measured by comparing the differences of the back projection of homologous points in both corrected RGB and TIR images.

  2. An Alignment Method for the Integration of Underwater 3D Data Captured by a Stereovision System and an Acoustic Camera.

    PubMed

    Lagudi, Antonio; Bianco, Gianfranco; Muzzupappa, Maurizio; Bruno, Fabio

    2016-04-14

    The integration of underwater 3D data captured by acoustic and optical systems is a promising technique in various applications such as mapping or vehicle navigation. It allows for compensating the drawbacks of the low resolution of acoustic sensors and the limitations of optical sensors in bad visibility conditions. Aligning these data is a challenging problem, as it is hard to make a point-to-point correspondence. This paper presents a multi-sensor registration for the automatic integration of 3D data acquired from a stereovision system and a 3D acoustic camera in close-range acquisition. An appropriate rig has been used in the laboratory tests to determine the relative position between the two sensor frames. The experimental results show that our alignment approach, based on the acquisition of a rig in several poses, can be adopted to estimate the rigid transformation between the two heterogeneous sensors. A first estimation of the unknown geometric transformation is obtained by a registration of the two 3D point clouds, but it ends up to be strongly affected by noise and data dispersion. A robust and optimal estimation is obtained by a statistical processing of the transformations computed for each pose. The effectiveness of the method has been demonstrated in this first experimentation of the proposed 3D opto-acoustic camera.

  3. An Alignment Method for the Integration of Underwater 3D Data Captured by a Stereovision System and an Acoustic Camera

    PubMed Central

    Lagudi, Antonio; Bianco, Gianfranco; Muzzupappa, Maurizio; Bruno, Fabio

    2016-01-01

    The integration of underwater 3D data captured by acoustic and optical systems is a promising technique in various applications such as mapping or vehicle navigation. It allows for compensating the drawbacks of the low resolution of acoustic sensors and the limitations of optical sensors in bad visibility conditions. Aligning these data is a challenging problem, as it is hard to make a point-to-point correspondence. This paper presents a multi-sensor registration for the automatic integration of 3D data acquired from a stereovision system and a 3D acoustic camera in close-range acquisition. An appropriate rig has been used in the laboratory tests to determine the relative position between the two sensor frames. The experimental results show that our alignment approach, based on the acquisition of a rig in several poses, can be adopted to estimate the rigid transformation between the two heterogeneous sensors. A first estimation of the unknown geometric transformation is obtained by a registration of the two 3D point clouds, but it ends up to be strongly affected by noise and data dispersion. A robust and optimal estimation is obtained by a statistical processing of the transformations computed for each pose. The effectiveness of the method has been demonstrated in this first experimentation of the proposed 3D opto-acoustic camera. PMID:27089344

  4. 3D near-to-surface conductivity reconstruction by inversion of VETEM data using the distorted Born iterative method

    USGS Publications Warehouse

    Wang, G.L.; Chew, W.C.; Cui, T.J.; Aydiner, A.A.; Wright, D.L.; Smith, D.V.

    2004-01-01

    Three-dimensional (3D) subsurface imaging by using inversion of data obtained from the very early time electromagnetic system (VETEM) was discussed. The study was carried out by using the distorted Born iterative method to match the internal nonlinear property of the 3D inversion problem. The forward solver was based on the total-current formulation bi-conjugate gradient-fast Fourier transform (BCCG-FFT). It was found that the selection of regularization parameter follow a heuristic rule as used in the Levenberg-Marquardt algorithm so that the iteration is stable.

  5. A simple method for the production of large volume 3D macroporous hydrogels for advanced biotechnological, medical and environmental applications

    PubMed Central

    Savina, Irina N.; Ingavle, Ganesh C.; Cundy, Andrew B.; Mikhalovsky, Sergey V.

    2016-01-01

    The development of bulk, three-dimensional (3D), macroporous polymers with high permeability, large surface area and large volume is highly desirable for a range of applications in the biomedical, biotechnological and environmental areas. The experimental techniques currently used are limited to the production of small size and volume cryogel material. In this work we propose a novel, versatile, simple and reproducible method for the synthesis of large volume porous polymer hydrogels by cryogelation. By controlling the freezing process of the reagent/polymer solution, large-scale 3D macroporous gels with wide interconnected pores (up to 200 μm in diameter) and large accessible surface area have been synthesized. For the first time, macroporous gels (of up to 400 ml bulk volume) with controlled porous structure were manufactured, with potential for scale up to much larger gel dimensions. This method can be used for production of novel 3D multi-component macroporous composite materials with a uniform distribution of embedded particles. The proposed method provides better control of freezing conditions and thus overcomes existing drawbacks limiting production of large gel-based devices and matrices. The proposed method could serve as a new design concept for functional 3D macroporous gels and composites preparation for biomedical, biotechnological and environmental applications. PMID:26883390

  6. A rapid, straightforward, and print house compatible mass fabrication method for integrating 3D paper-based microfluidics.

    PubMed

    Xiao, Liangpin; Liu, Xianming; Zhong, Runtao; Zhang, Kaiqing; Zhang, Xiaodi; Zhou, Xiaomian; Lin, Bingcheng; Du, Yuguang

    2013-11-01

    Three-dimensional (3D) paper-based microfluidics, which is featured with high performance and speedy determination, promise to carry out multistep sample pretreatment and orderly chemical reaction, which have been used for medical diagnosis, cell culture, environment determination, and so on with broad market prospect. However, there are some drawbacks in the existing fabrication methods for 3D paper-based microfluidics, such as, cumbersome and time-consuming device assembly; expensive and difficult process for manufacture; contamination caused by organic reagents from their fabrication process. Here, we present a simple printing-bookbinding method for mass fabricating 3D paper-based microfluidics. This approach involves two main steps: (i) wax-printing, (ii) bookbinding. We tested the delivery capability, diffusion rate, homogeneity and demonstrated the applicability of the device to chemical analysis by nitrite colorimetric assays. The described method is rapid (<30 s), cheap, easy to manipulate, and compatible with the flat stitching method that is common in a print house, making itself an ideal scheme for large-scale production of 3D paper-based microfluidics.

  7. A simple method for the production of large volume 3D macroporous hydrogels for advanced biotechnological, medical and environmental applications

    NASA Astrophysics Data System (ADS)

    Savina, Irina N.; Ingavle, Ganesh C.; Cundy, Andrew B.; Mikhalovsky, Sergey V.

    2016-02-01

    The development of bulk, three-dimensional (3D), macroporous polymers with high permeability, large surface area and large volume is highly desirable for a range of applications in the biomedical, biotechnological and environmental areas. The experimental techniques currently used are limited to the production of small size and volume cryogel material. In this work we propose a novel, versatile, simple and reproducible method for the synthesis of large volume porous polymer hydrogels by cryogelation. By controlling the freezing process of the reagent/polymer solution, large-scale 3D macroporous gels with wide interconnected pores (up to 200 μm in diameter) and large accessible surface area have been synthesized. For the first time, macroporous gels (of up to 400 ml bulk volume) with controlled porous structure were manufactured, with potential for scale up to much larger gel dimensions. This method can be used for production of novel 3D multi-component macroporous composite materials with a uniform distribution of embedded particles. The proposed method provides better control of freezing conditions and thus overcomes existing drawbacks limiting production of large gel-based devices and matrices. The proposed method could serve as a new design concept for functional 3D macroporous gels and composites preparation for biomedical, biotechnological and environmental applications.

  8. Method for molding threads in graphite panels

    DOEpatents

    Short, William W.; Spencer, Cecil

    1994-01-01

    A graphite panel (10) with a hole (11) having a damaged thread (12) is repaired by drilling the hole (11) to remove all of the thread and make a new hole (13) of larger diameter. A bolt (14) with a lubricated thread (17) is placed in the new hole (13) and the hole (13) is packed with graphite cement (16) to fill the hole and the thread on the bolt. The graphite cement (16) is cured, and the bolt is unscrewed therefrom to leave a thread (20) in the cement (16) which is at least as strong as that of the original thread (12).

  9. Method for molding threads in graphite panels

    DOEpatents

    Short, W.W.; Spencer, C.

    1994-11-29

    A graphite panel with a hole having a damaged thread is repaired by drilling the hole to remove all of the thread and making a new hole of larger diameter. A bolt with a lubricated thread is placed in the new hole and the hole is packed with graphite cement to fill the hole and the thread on the bolt. The graphite cement is cured, and the bolt is unscrewed therefrom to leave a thread in the cement which is at least as strong as that of the original thread. 8 figures.

  10. Post-processing methods of rendering and visualizing 3-D reconstructed tomographic images

    SciTech Connect

    Wong, S.T.C.

    1997-02-01

    The purpose of this presentation is to discuss the computer processing techniques of tomographic images, after they have been generated by imaging scanners, for volume visualization. Volume visualization is concerned with the representation, manipulation, and rendering of volumetric data. Since the first digital images were produced from computed tomography (CT) scanners in the mid 1970s, applications of visualization in medicine have expanded dramatically. Today, three-dimensional (3D) medical visualization has expanded from using CT data, the first inherently digital source of 3D medical data, to using data from various medical imaging modalities, including magnetic resonance scanners, positron emission scanners, digital ultrasound, electronic and confocal microscopy, and other medical imaging modalities. We have advanced from rendering anatomy to aid diagnosis and visualize complex anatomic structures to planning and assisting surgery and radiation treatment. New, more accurate and cost-effective procedures for clinical services and biomedical research have become possible by integrating computer graphics technology with medical images. This trend is particularly noticeable in current market-driven health care environment. For example, interventional imaging, image-guided surgery, and stereotactic and visualization techniques are now stemming into surgical practice. In this presentation, we discuss only computer-display-based approaches of volumetric medical visualization. That is, we assume that the display device available is two-dimensional (2D) in nature and all analysis of multidimensional image data is to be carried out via the 2D screen of the device. There are technologies such as holography and virtual reality that do provide a {open_quotes}true 3D screen{close_quotes}. To confine the scope, this presentation will not discuss such approaches.

  11. Improved Algorithms and Methods for Solving Strongly Variable-Viscosity 3D Stokes flow and Strongly Variable Permeability 3D D’Arcy flow on a Parallel Computer

    NASA Astrophysics Data System (ADS)

    Morgan, J. P.; Hasenclever, J.; Shi, C.

    2009-12-01

    Computational studies of mantle convection face large challenges to obtain fast and accurate solutions for variable viscosity 3d flow. Recently we have been using parallel (MPI-based) MATLAB to more thoroughly explore possible pitfalls and algorithmic improvements to current ‘best-practice’ variable viscosity Stokes and D’Arcy flow solvers. Here we focus on study of finite-element solvers based on a decomposition of the equations for incompressible Stokes flow: Ku + Gp = f and G’u = 0 (K-velocity stiffness matrix, G-discretized gradient operator, G’=transpose(G)-discretized divergence operator) into a single equation for pressure Sp==G’K^-1Gp =G’K^-1f, in which the velocity is also updated as part of each pressure iteration. The outer pressure iteration is solved with preconditioned conjugate gradients (CG) (Maday and Patera, 1989), with a multigrid-preconditioned CG solver for the z=K^-1 (Gq) step of each pressure iteration. One fairly well-known pitfall (Fortin, 1985) is that constant-pressure elements can generate a spurious non-zero flow under a constant body force within non-rectangular geometries. We found a new pitfall when using an iterative method to solve the Kz=y operation in evaluating each G’K^-1Gq product -- even if the residual of the outer pressure equation converges to zero, the discrete divergence of this equation does not correspondingly converge; the error in the incompressibility depends on roughly the square of the tolerance used to solve each Kz=y velocity-like subproblem. Our current best recipe is: (1) Use flexible CG (cf. Notay, 2001) to solve the outer pressure problem. This is analogous to GMRES for a symmetric positive definite problem. It allows use of numerically unsymmetric and/or inexact preconditioners with CG. (2) In this outer-iteration, use an ‘alpha-bar’ technique to find the appropriate magnitude alpha to change the solution in each search direction. This improvement allows a similar iterative tolerance of

  12. An approach to 3D magnetic field calculation using numerical and differential algebra methods

    SciTech Connect

    Caspi, S.; Helm, M.; Laslett, L.J.; Brady, V.O.

    1992-07-17

    Motivated by the need for new means for specification and determination of 3D fields that are produced by electromagnetic lens elements in the region interior to coil windings and seeking to obtain techniques that will be convenient for accurate conductor placement and dynamical study of particle motion, we have conveniently gene the representation of a 2D magnetic field to 3D. We have shown that the 3 dimensioal magnetic field components of a multipole magnet in the curl-fire divergence-fire region near the axis r=0 can be derived from one dimensional functions A{sub n}(z) and their derivatives (part 1). In the region interior to coil windings of accelerator magnets the three spatial components of magnet fields can be expressed in terms of harmonic components'' proportional to functions sin (n{theta}) or cos (n{theta}) of the azimuthal angle. The r,z dependence of any such component can then be expressed in terms of powers of r times functions A{sub n}(z) and their derivatives. For twodimensional configurations B{sub z} of course is identically zero, the derivatives of A{sub n}(z) vanish, and the harmonic components of the transverse field then acquire a simple proportionality B{sub r,n} {proportional to} r{sup n-1} sin (n{theta}),B{sub {theta},n} {proportional to} r{sup n-1} cos (n{theta}), whereas in a 3-D configuration the more complex nature of the field gives rise to additional so-called psuedomultipole'' components as judged by additional powers of r required in the development of the field. Computation of the 3-D magnetic field arising at a sequence of field points, as a direct result of a specified current configuration or coil geometry, can be calculated explicitly through use of the Biot-Savart law and from such data the coefficients can then be derived for a general development of the type indicated above. We indicate, discuss, and illustrate two means by which this development may be performed.

  13. Line relaxation methods for the solution of 2D and 3D compressible flows

    NASA Technical Reports Server (NTRS)

    Hassan, O.; Probert, E. J.; Morgan, K.; Peraire, J.

    1993-01-01

    An implicit finite element based algorithm for the compressible Navier-Stokes equations is outlined, and the solution of the resulting equation by a line relaxation on general meshes of triangles or tetrahedra is described. The problem of generating and adapting unstructured meshes for viscous flows is reexamined, and an approach for both 2D and 3D simulations is proposed. An efficient approach appears to be the use of an implicit/explicit procedure, with the implicit treatment being restricted to those regions of the mesh where viscous effects are known to be dominant. Numerical examples demonstrating the computational performance of the proposed techniques are given.

  14. A method to constrain the configuration of the subsurface structure in 3-D gravity inversion

    SciTech Connect

    Hu, Y.; Rabinowitz, P.D.

    1996-12-31

    A three-dimensional inversion technique is developed to investigate the structure of the oceanic crust, using high quality offshore bathymetry, gravity and seismic data. The gravity signatures associated with variations in the thickness of the oceanic crust are isolated from the observed free-air anomaly by subtracting the gravitational effects of seafloor topography and the upper mantle thermal structure, downward continued to the mean depth of the crust/mantle interface and converted onto the relief on that surface. The thickness of the oceanic crust is then calculated by subtracting sea water depth from the depth of the gravity-inferred crust/mantle interface. Seismic refraction data was introduced directly as a constraint in the construction of the initial model for the configuration of the crust/mantle interface and the iterative process of the 3-D joint inversion to reduce the ambiguity in gravity interpretation. This technique can be easily applied to the offshore areas to interpret bathymetry, gravity and seismic data that have been routinely collected for the purpose of geophysical exploration. Compared to the unconstrained gravity inversion, this technique can predict a 3-D crustal model that fits better both gravity and seismic observation data of the study area.

  15. A new method for determining the 3D spatial orientation of molar microwear.

    PubMed

    Tausch, Jeremy; Kullmer, Ottmar; Bromage, Timothy G

    2015-01-01

    Many types of behavioral and dietary information can be extracted from studies of tooth microwear. Some studies have even been successful at determining the overall directionality of microwear in order to establish gross masticatory movement (Williams et al., 2009, PNAS, 106, 11194-11199). However, microwear has never been successfully visualized in situ in 3 dimensions (3D), visualized virtually and quantified. The ability to accomplish this yields information on exact masticatory movement which can then be used to address any number of eco-biological and physiological questions in extant and extinct organisms. In order to create 3D virtual reality (VR) representation of microwear, fossil molars from the Javanese Sangiran 7 (S7) Homo erectus tooth collection and from historic hunter/gatherer meta-populations were imaged, the microwear in 3 dimensions was extracted, this information was then placed back on VR representations of the molars and quantified. The methodology contained herein demonstrates the efficacy and importance of such a technique in determining gross masticatory movement in fossil and recent hominin molars. This methodology could, in theory, be applied to any organism which produces microwear on its dentition. Applications in the fields of dentistry, orthodontics, climatology and dietary and habitat reconstructions can also be envisioned. PMID:26114579

  16. METHODS FOR USING 3-D ULTRASOUND SPECKLE TRACKING IN BIAXIAL MECHANICAL TESTING OF BIOLOGICAL TISSUE SAMPLES

    PubMed Central

    Yap, Choon Hwai; Park, Dae Woo; Dutta, Debaditya; Simon, Marc; Kim, Kang

    2014-01-01

    Being multilayered and anisotropic, biological tissues such as cardiac and arterial walls are structurally complex, making full assessment and understanding of their mechanical behavior challenging. Current standard mechanical testing uses surface markers to track tissue deformations and does not provide deformation data below the surface. In the study described here, we found that combining mechanical testing with 3-D ultrasound speckle tracking could overcome this limitation. Rat myocardium was tested with a biaxial tester and was concurrently scanned with high-frequency ultrasound in three dimensions. The strain energy function was computed from stresses and strains using an iterative non-linear curve-fitting algorithm. Because the strain energy function consists of terms for the base matrix and for embedded fibers, spatially varying fiber orientation was also computed by curve fitting. Using finite-element simulations, we first validated the accuracy of the non-linear curve-fitting algorithm. Next, we compared experimentally measured rat myocardium strain energy function values with those in the literature and found a matching order of magnitude. Finally, we retained samples after the experiments for fiber orientation quantification using histology and found that the results satisfactorily matched those computed in the experiments. We conclude that 3-D ultrasound speckle tracking can be a useful addition to traditional mechanical testing of biological tissues and may provide the benefit of enabling fiber orientation computation. PMID:25616585

  17. Global Calibration Method of a Camera Using the Constraint of Line Features and 3D World Points

    NASA Astrophysics Data System (ADS)

    Xu, Guan; Zhang, Xinyuan; Li, Xiaotao; Su, Jian; Hao, Zhaobing

    2016-08-01

    We present a reliable calibration method using the constraint of 2D projective lines and 3D world points to elaborate the accuracy of the camera calibration. Based on the relationship between the 3D points and the projective plane, the constraint equations of the transformation matrix are generated from the 3D points and 2D projective lines. The transformation matrix is solved by the singular value decomposition. The proposed method is compared with the point-based calibration to verify the measurement validity. The mean values of the root-mean-square errors using the proposed method are 7.69×10-4, 6.98×10-4, 2.29×10-4, and 1.09×10-3 while the ones of the original method are 8.10×10-4, 1.29×10-2, 2.58×10-2, and 8.12×10-3. Moreover, the average logarithmic errors of the calibration method are evaluated and compared with the former method in different Gaussian noises and projective lines. The variances of the average errors using the proposed method are 1.70×10-5, 1.39×10-4, 1.13×10-4, and 4.06×10-4, which indicates the stability and accuracy of the method.

  18. SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

    PubMed Central

    Boniecki, Michal J.; Lach, Grzegorz; Dawson, Wayne K.; Tomala, Konrad; Lukasz, Pawel; Soltysinski, Tomasz; Rother, Kristian M.; Bujnicki, Janusz M.

    2016-01-01

    RNA molecules play fundamental roles in cellular processes. Their function and interactions with other biomolecules are dependent on the ability to form complex three-dimensional (3D) structures. However, experimental determination of RNA 3D structures is laborious and challenging, and therefore, the majority of known RNAs remain structurally uncharacterized. Here, we present SimRNA: a new method for computational RNA 3D structure prediction, which uses a coarse-grained representation, relies on the Monte Carlo method for sampling the conformational space, and employs a statistical potential to approximate the energy and identify conformations that correspond to biologically relevant structures. SimRNA can fold RNA molecules using only sequence information, and, on established test sequences, it recapitulates secondary structure with high accuracy, including correct prediction of pseudoknots. For modeling of complex 3D structures, it can use additional restraints, derived from experimental or computational analyses, including information about secondary structure and/or long-range contacts. SimRNA also can be used to analyze conformational landscapes and identify potential alternative structures. PMID:26687716

  19. Principal component analysis in construction of 3D human knee joint models using a statistical shape model method.

    PubMed

    Tsai, Tsung-Yuan; Li, Jing-Sheng; Wang, Shaobai; Li, Pingyue; Kwon, Young-Min; Li, Guoan

    2015-01-01

    The statistical shape model (SSM) method that uses 2D images of the knee joint to predict the three-dimensional (3D) joint surface model has been reported in the literature. In this study, we constructed a SSM database using 152 human computed tomography (CT) knee joint models, including the femur, tibia and patella and analysed the characteristics of each principal component of the SSM. The surface models of two in vivo knees were predicted using the SSM and their 2D bi-plane fluoroscopic images. The predicted models were compared to their CT joint models. The differences between the predicted 3D knee joint surfaces and the CT image-based surfaces were 0.30 ± 0.81 mm, 0.34 ± 0.79 mm and 0.36 ± 0.59 mm for the femur, tibia and patella, respectively (average ± standard deviation). The computational time for each bone of the knee joint was within 30 s using a personal computer. The analysis of this study indicated that the SSM method could be a useful tool to construct 3D surface models of the knee with sub-millimeter accuracy in real time. Thus, it may have a broad application in computer-assisted knee surgeries that require 3D surface models of the knee.

  20. iBem3D, a three-dimensional iterative boundary element method using angular dislocations for modeling geologic structures

    NASA Astrophysics Data System (ADS)

    Maerten, F.; Maerten, L.; Pollard, D. D.

    2014-11-01

    Most analytical solutions to engineering or geological problems are limited to simple geometries. For example, analytical solutions have been found to solve for stresses around a circular hole in a plate. To solve more complex problems, mathematicians and engineers have developed powerful computer-aided numerical methods, which can be categorized into two main types: differential methods and integral methods. The finite element method (FEM) is a differential method that was developed in the 1950s and is one of the most commonly used numerical methods today. Since its development, other differential methods, including the boundary element method (BEM), have been developed to solve different types of problems. The purpose of this paper is to describe iBem3D, formally called Poly3D, a C++ and modular 3D boundary element computer program based on the theory of angular dislocations for modeling three-dimensional (3D) discontinuities in an elastic, heterogeneous, isotropic whole- or half-space. After 20 years and more than 150 scientific publications, we present in detail the formulation behind this method, its enhancements over the years as well as some important applications in several domains of the geosciences. The main advantage of using this formulation, for describing geological objects such as faults, resides in the possibility of modeling complex geometries without gaps and overlaps between adjacent triangular dislocation elements, which is a significant shortcoming for models using rectangular dislocation elements. Reliability, speed, simplicity, and accuracy are enhanced in the latest version of the computer code. Industrial applications include subseismic fault modeling, fractured reservoir modeling, interpretation and validation of fault connectivity and reservoir compartmentalization, depleted area and fault reactivation, and pressurized wellbore stability. Academic applications include earthquake and volcano monitoring, hazard mitigation, and slope

  1. Immersion transmission ellipsometry (ITE): a new method for the precise determination of the 3D indicatrix of thin films

    NASA Astrophysics Data System (ADS)

    Jung, C. C.; Stumpe, J.

    2005-02-01

    The new method of immersion transmission ellipsometry (ITE) [1] has been developed. It allows the highly accurate determination of the absolute three-dimensional (3D) refractive indices of anisotropic thin films. The method is combined with conventional ellipsometry in transmission and reflection, and the thickness determination of anisotropic films solely by optical methods also becomes more accurate. The method is applied to the determination of the 3D refractive indices of thin spin-coated films of an azobenzene-containing liquid-crystalline copolymer. The development of the anisotropy in these films by photo-orientation and subsequent annealing is demonstrated. Depending on the annealing temperature, oblate or prolate orders are generated.

  2. Interaction and behaviour imaging: a novel method to measure mother-infant interaction using video 3D reconstruction.

    PubMed

    Leclère, C; Avril, M; Viaux-Savelon, S; Bodeau, N; Achard, C; Missonnier, S; Keren, M; Feldman, R; Chetouani, M; Cohen, D

    2016-05-24

    Studying early interaction is essential for understanding development and psychopathology. Automatic computational methods offer the possibility to analyse social signals and behaviours of several partners simultaneously and dynamically. Here, 20 dyads of mothers and their 13-36-month-old infants were videotaped during mother-infant interaction including 10 extremely high-risk and 10 low-risk dyads using two-dimensional (2D) and three-dimensional (3D) sensors. From 2D+3D data and 3D space reconstruction, we extracted individual parameters (quantity of movement and motion activity ratio for each partner) and dyadic parameters related to the dynamics of partners heads distance (contribution to heads distance), to the focus of mutual engagement (percentage of time spent face to face or oriented to the task) and to the dynamics of motion activity (synchrony ratio, overlap ratio, pause ratio). Features are compared with blind global rating of the interaction using the coding interactive behavior (CIB). We found that individual and dyadic parameters of 2D+3D motion features perfectly correlates with rated CIB maternal and dyadic composite scores. Support Vector Machine classification using all 2D-3D motion features classified 100% of the dyads in their group meaning that motion behaviours are sufficient to distinguish high-risk from low-risk dyads. The proposed method may present a promising, low-cost methodology that can uniquely use artificial technology to detect meaningful features of human interactions and may have several implications for studying dyadic behaviours in psychiatry. Combining both global rating scales and computerized methods may enable a continuum of time scale from a summary of entire interactions to second-by-second dynamics.

  3. Interaction and behaviour imaging: a novel method to measure mother–infant interaction using video 3D reconstruction

    PubMed Central

    Leclère, C; Avril, M; Viaux-Savelon, S; Bodeau, N; Achard, C; Missonnier, S; Keren, M; Feldman, R; Chetouani, M; Cohen, D

    2016-01-01

    Studying early interaction is essential for understanding development and psychopathology. Automatic computational methods offer the possibility to analyse social signals and behaviours of several partners simultaneously and dynamically. Here, 20 dyads of mothers and their 13–36-month-old infants were videotaped during mother–infant interaction including 10 extremely high-risk and 10 low-risk dyads using two-dimensional (2D) and three-dimensional (3D) sensors. From 2D+3D data and 3D space reconstruction, we extracted individual parameters (quantity of movement and motion activity ratio for each partner) and dyadic parameters related to the dynamics of partners heads distance (contribution to heads distance), to the focus of mutual engagement (percentage of time spent face to face or oriented to the task) and to the dynamics of motion activity (synchrony ratio, overlap ratio, pause ratio). Features are compared with blind global rating of the interaction using the coding interactive behavior (CIB). We found that individual and dyadic parameters of 2D+3D motion features perfectly correlates with rated CIB maternal and dyadic composite scores. Support Vector Machine classification using all 2D–3D motion features classified 100% of the dyads in their group meaning that motion behaviours are sufficient to distinguish high-risk from low-risk dyads. The proposed method may present a promising, low-cost methodology that can uniquely use artificial technology to detect meaningful features of human interactions and may have several implications for studying dyadic behaviours in psychiatry. Combining both global rating scales and computerized methods may enable a continuum of time scale from a summary of entire interactions to second-by-second dynamics. PMID:27219342

  4. 3D resistivity method to monitor degradation of an organic contaminant in sand boxes

    NASA Astrophysics Data System (ADS)

    Fernandez, P. M.; Bloem, E.; Philippe, R.; French, H. K.

    2015-12-01

    Degradation of organic chemicals under various saturation conditions is a process highly relevant to protect groundwater. The redox potential drives the degradation of organic compounds. Its variation affects the water chemistry, gas release and responses of the geo-electrical signature. This study explores how non-invasive measurements sensitive to geo-electrical properties provides quantitative information about the in-situ redox situation. During this presentation, the preliminary results of a laboratory experiment to study the degradation of deicing chemicals with 3D resistivity and self-potential techniques, water samples will be shown. The experiment consists of sand boxes (1.0x0.5x0.4 m) to which both sides of each box is contaminated with propylene glycol, an aircraft deicing fluid, commonly used in Norwegian airports. Each source is placed near the water table with static conditions. At one side a conductor is placed, linking the contamination zone at the water table and the unsaturated zone with a low water content, to improve the degradation by facilitating the electron exchange. At the other side, degradation occurs under natural conditions. Each box is equipped with 288 electrodes, distributed on six faces to perform 3D resistivity measurements. In addition to the resistivity, self-potential measurements are taken from the sand surface. Six water wells are installed above and below the water table to provide more information on the degradation processes. Moreover, measurements of carbon dioxide on the surface are performed as higher concentrations are expected where the pollutant is degraded.

  5. A Novel Medical Freehand Sketch 3D Model Retrieval Method by Dimensionality Reduction and Feature Vector Transformation

    PubMed Central

    Jing, Zhang; Sheng, Kang Bao

    2016-01-01

    To assist physicians to quickly find the required 3D model from the mass medical model, we propose a novel retrieval method, called DRFVT, which combines the characteristics of dimensionality reduction (DR) and feature vector transformation (FVT) method. The DR method reduces the dimensionality of feature vector; only the top M low frequency Discrete Fourier Transform coefficients are retained. The FVT method does the transformation of the original feature vector and generates a new feature vector to solve the problem of noise sensitivity. The experiment results demonstrate that the DRFVT method achieves more effective and efficient retrieval results than other proposed methods. PMID:27293478

  6. A Bio-Acoustic Levitational (BAL) Assembly Method for Engineering of Multilayered, 3D Brain-Like Constructs, Using Human Embryonic Stem Cell Derived Neuro-Progenitors.

    PubMed

    Bouyer, Charlène; Chen, Pu; Güven, Sinan; Demirtaş, Tuğrul Tolga; Nieland, Thomas J F; Padilla, Frédéric; Demirci, Utkan

    2016-01-01

    A bio-acoustic levitational assembly method for engineering of multilayered, 3D brainlike constructs is presented. Acoustic radiation forces are used to levitate neuroprogenitors derived from human embryonic stem cells in 3D multilayered fibrin tissue constructs. The neuro-progenitor cells are subsequently differentiated in neural cells, resulting in a 3D neuronal construct with inter and intralayer neurite elongations.

  7. 3D Quantification of Wall Shear Stress and Oscillatory Shear Index Using a Finite-Element Method in 3D CINE PC-MRI Data of the Thoracic Aorta.

    PubMed

    Sotelo, Julio; Urbina, Jesus; Valverde, Israel; Tejos, Cristian; Irarrazaval, Pablo; Andia, Marcelo E; Uribe, Sergio; Hurtado, Daniel E

    2016-06-01

    Several 2D methods have been proposed to estimate WSS and OSI from PC-MRI, neglecting the longitudinal velocity gradients that typically arise in cardiovascular flow, particularly on vessel geometries whose cross section and centerline orientation strongly vary in the axial direction. Thus, the contribution of longitudinal velocity gradients remains understudied. In this work, we propose a 3D finite-element method for the quantification of WSS and OSI from 3D-CINE PC-MRI that accounts for both in-plane and longitudinal velocity gradients. We demonstrate the convergence and robustness of the method on cylindrical geometries using a synthetic phantom based on the Poiseuille flow equation. We also show that, in the presence of noise, the method is both stable and accurate. Using computational fluid dynamics simulations, we show that the proposed 3D method results in more accurate WSS estimates than those obtained from a 2D analysis not considering out-of-plane velocity gradients. Further, we conclude that for irregular geometries the accurate prediction of WSS requires the consideration of longitudinal gradients in the velocity field. Additionally, we compute 3D maps of WSS and OSI for 3D-CINE PC-MRI data sets from an aortic phantom and sixteen healthy volunteers and two patients. The OSI values show a greater dispersion than WSS, which is strongly dependent on the PC-MRI resolution. We envision that the proposed 3D method will improve the estimation of WSS and OSI from 3D-CINE PC-MRI images, allowing for more accurate estimates in vessels with pathologies that induce high longitudinal velocity gradients, such as coarctations and aneurisms.

  8. 3D controlled-source electromagnetic modeling in anisotropic medium using edge-based finite element method

    NASA Astrophysics Data System (ADS)

    Cai, Hongzhu; Xiong, Bin; Han, Muran; Zhdanov, Michael

    2014-12-01

    This paper presents a linear edge-based finite element method for numerical modeling of 3D controlled-source electromagnetic data in an anisotropic conductive medium. We use a nonuniform rectangular mesh in order to capture the rapid change of diffusive electromagnetic field within the regions of anomalous conductivity and close to the location of the source. In order to avoid the source singularity, we solve Maxwell's equation with respect to anomalous electric field. The nonuniform rectangular mesh can be transformed to hexahedral mesh in order to simulate the bathymetry effect. The sparse system of finite element equations is solved using a quasi-minimum residual method with a Jacobian preconditioner. We have applied the developed algorithm to compute a typical MCSEM response over a 3D model of a hydrocarbon reservoir located in both isotropic and anisotropic mediums. The modeling results are in a good agreement with the solutions obtained by the integral equation method.

  9. A new 3D shape precision measurement system calibration method based on non-diffraction grating structured light projection

    NASA Astrophysics Data System (ADS)

    Zhu, Ya; Zhou, Liping; Li, Wenlong; Gan, Jianghong; Xu, Long

    2016-03-01

    Phase calculation-based fringe projection techniques are widely used in three-dimensional shape measurement fields to obtain the 3D shape data of the object's surface. One important step of the phase calculation is calibration, which determines the relationship between the image phase and depth information. The traditional calibration methods are too complex and require many parameters. In this paper, model of 3D shape precision calibration method based on non-diffraction grating structured light fringes projection is proposed, which is consist of camera model, fringe phase obtaining, height-phase relationship model. This method is simple, convenient and there is no approximation in it, which can satisfy the precision measurement.

  10. Small inlet optical panel and a method of making a small inlet optical panel

    DOEpatents

    Veligdan, James T.; Slobodin, David

    2001-01-01

    An optical panel having a small inlet, and a method of making a small inlet optical panel, are disclosed, which optical panel includes a individually coating, stacking, and cutting a first plurality of stacked optical waveguides to form an outlet face body with an outlet face, individually coating, stacking, and cutting a second plurality of stacked optical waveguides to form an inlet face body with an inlet face, and connecting an optical coupling element to the first plurality and to the second plurality, wherein the optical coupling element redirects light along a parallel axis of the inlet face to a parallel axis of the outlet face. In the preferred embodiment of the present invention, the inlet face is disposed obliquely with and askew from the outlet face.

  11. An Orientation Measurement Method Based on Hall-effect Sensors for Permanent Magnet Spherical Actuators with 3D Magnet Array

    PubMed Central

    Yan, Liang; Zhu, Bo; Jiao, Zongxia; Chen, Chin-Yin; Chen, I-Ming

    2014-01-01

    An orientation measurement method based on Hall-effect sensors is proposed for permanent magnet (PM) spherical actuators with three-dimensional (3D) magnet array. As there is no contact between the measurement system and the rotor, this method could effectively avoid friction torque and additional inertial moment existing in conventional approaches. Curved surface fitting method based on exponential approximation is proposed to formulate the magnetic field distribution in 3D space. The comparison with conventional modeling method shows that it helps to improve the model accuracy. The Hall-effect sensors are distributed around the rotor with PM poles to detect the flux density at different points, and thus the rotor orientation can be computed from the measured results and analytical models. Experiments have been conducted on the developed research prototype of the spherical actuator to validate the accuracy of the analytical equations relating the rotor orientation and the value of magnetic flux density. The experimental results show that the proposed method can measure the rotor orientation precisely, and the measurement accuracy could be improved by the novel 3D magnet array. The study result could be used for real-time motion control of PM spherical actuators. PMID:25342000

  12. An Orientation Measurement Method Based on Hall-effect Sensors for Permanent Magnet Spherical Actuators with 3D Magnet Array

    NASA Astrophysics Data System (ADS)

    Yan, Liang; Zhu, Bo; Jiao, Zongxia; Chen, Chin-Yin; Chen, I.-Ming

    2014-10-01

    An orientation measurement method based on Hall-effect sensors is proposed for permanent magnet (PM) spherical actuators with three-dimensional (3D) magnet array. As there is no contact between the measurement system and the rotor, this method could effectively avoid friction torque and additional inertial moment existing in conventional approaches. Curved surface fitting method based on exponential approximation is proposed to formulate the magnetic field distribution in 3D space. The comparison with conventional modeling method shows that it helps to improve the model accuracy. The Hall-effect sensors are distributed around the rotor with PM poles to detect the flux density at different points, and thus the rotor orientation can be computed from the measured results and analytical models. Experiments have been conducted on the developed research prototype of the spherical actuator to validate the accuracy of the analytical equations relating the rotor orientation and the value of magnetic flux density. The experimental results show that the proposed method can measure the rotor orientation precisely, and the measurement accuracy could be improved by the novel 3D magnet array. The study result could be used for real-time motion control of PM spherical actuators.

  13. Simulation of unsteady state performance of a secondary air system by the 1D-3D-Structure coupled method

    NASA Astrophysics Data System (ADS)

    Wu, Hong; Li, Peng; Li, Yulong

    2016-02-01

    This paper describes the calculation method for unsteady state conditions in the secondary air systems in gas turbines. The 1D-3D-Structure coupled method was applied. A 1D code was used to model the standard components that have typical geometric characteristics. Their flow and heat transfer were described by empirical correlations based on experimental data or CFD calculations. A 3D code was used to model the non-standard components that cannot be described by typical geometric languages, while a finite element analysis was carried out to compute the structural deformation and heat conduction at certain important positions. These codes were coupled through their interfaces. Thus, the changes in heat transfer and structure and their interactions caused by exterior disturbances can be reflected. The results of the coupling method in an unsteady state showed an apparent deviation from the existing data, while the results in the steady state were highly consistent with the existing data. The difference in the results in the unsteady state was caused primarily by structural deformation that cannot be predicted by the 1D method. Thus, in order to obtain the unsteady state performance of a secondary air system more accurately and efficiently, the 1D-3D-Structure coupled method should be used.

  14. An orientation measurement method based on Hall-effect sensors for permanent magnet spherical actuators with 3D magnet array.

    PubMed

    Yan, Liang; Zhu, Bo; Jiao, Zongxia; Chen, Chin-Yin; Chen, I-Ming

    2014-10-24

    An orientation measurement method based on Hall-effect sensors is proposed for permanent magnet (PM) spherical actuators with three-dimensional (3D) magnet array. As there is no contact between the measurement system and the rotor, this method could effectively avoid friction torque and additional inertial moment existing in conventional approaches. Curved surface fitting method based on exponential approximation is proposed to formulate the magnetic field distribution in 3D space. The comparison with conventional modeling method shows that it helps to improve the model accuracy. The Hall-effect sensors are distributed around the rotor with PM poles to detect the flux density at different points, and thus the rotor orientation can be computed from the measured results and analytical models. Experiments have been conducted on the developed research prototype of the spherical actuator to validate the accuracy of the analytical equations relating the rotor orientation and the value of magnetic flux density. The experimental results show that the proposed method can measure the rotor orientation precisely, and the measurement accuracy could be improved by the novel 3D magnet array. The study result could be used for real-time motion control of PM spherical actuators.

  15. A 3D model for rubber tyres contact, based on Kalker's methods through the STRIPES model

    NASA Astrophysics Data System (ADS)

    Chollet, Hugues

    2012-01-01

    A project on the pavement-rutting evolution under the effect of a tram on tyre, led the author to make a link between road and railway approaches to the problem of rolling contact. A simplified model is proposed with a fine description of the contact patch between a tyre and the road, and a more realistic pressure and shear stresses distribution than that available from basic models previously available. Experimental measurements are used to identify some characteristics of the force description, while the geometric shape of the tyre-road section are used, like in the traditional rail-wheel contact models, to build the 3D model. The last part validates a plausible contact pressure shape from self-aligning torque measurements and from Kalker's contact stresses gradient applied to the real tyre used in the project. The final result is a brush model extended from the wheel-rail STRIPES one, applicable to dynamics or contact studies of real tyres, with a physical coupling between longitudinal, lateral and spin effects, and a relatively fine description of the contact stresses along each strip of each tyre of the vehicle on an uneven road.

  16. Development of portable 3D optical measuring system using structured light projection method

    NASA Astrophysics Data System (ADS)

    Aoki, Hiroshi

    2014-05-01

    Three-dimensional (3D) scanners are becoming increasingly common in many industries. However most of these scanning technologies have drawbacks for practical use due to size, weight, accessibility, and ease-of-use. Depending on the application, speed, flexibility and portability can often be deemed more important than accuracy. We have developed a solution to address this market requirement and overcome the aforementioned limitations. To counteract shortcomings such as heavy weight and large size, an optical sensor is used that consists of a laser projector, a camera system, and a multi-touch screen. Structured laser light is projected onto the measured object with a newly designed laser projector employing a single Micro Electro Mechanical Systems (MEMS) mirror. The optical system is optimized for the combination of a Laser Diode (LD), the MEMS mirror and the size of measurement area to secure the ideal contrast of structured light. Also, we developed a new calibration algorithm for this sensor with MEMS laser projector that uses an optical camera model for point cloud calculation. These technical advancements make the sensor compact, save power consumption, and reduce heat generation yet still allows for rapid calculation. Due to the principle of the measurement, structured light triangulation utilizing phase-shifting technology, resolution is improved. To meet requirements for practical applications, the optics, electronics, image processing, display and data management capabilities have been integrated into a single compact unit.

  17. Viral Infection at High Magnification: 3D Electron Microscopy Methods to Analyze the Architecture of Infected Cells.

    PubMed

    Romero-Brey, Inés; Bartenschlager, Ralf

    2015-12-03

    As obligate intracellular parasites, viruses need to hijack their cellular hosts and reprogram their machineries in order to replicate their genomes and produce new virions. For the direct visualization of the different steps of a viral life cycle (attachment, entry, replication, assembly and egress) electron microscopy (EM) methods are extremely helpful. While conventional EM has given important information about virus-host cell interactions, the development of three-dimensional EM (3D-EM) approaches provides unprecedented insights into how viruses remodel the intracellular architecture of the host cell. During the last years several 3D-EM methods have been developed. Here we will provide a description of the main approaches and examples of innovative applications.

  18. Multi-pulse time delay integration method for flexible 3D super-resolution range-gated imaging.

    PubMed

    Xinwei, Wang; Youfu, Li; Yan, Zhou

    2015-03-23

    Constructing flexible regular-shaped range-intensity profiles by the convolution of illuminator laser pulse and sensor gate pulse is crucial for 3D super-resolution range-gated imaging. However, ns-scale rectangular-shaped laser pulse with tunable pulse width is difficult to be obtained, especially for pulsed solid-stated lasers. In this paper we propose a multi-pulse time delay integration (MPTDI) method to reshape range-intensity profiles (RIP) free from the above limitation of pulsed lasers. An equivalent laser pulse temporal shaping model is established to evaluate and optimize the MPTDI method. By using MPTDI, the RIP shape and depth of viewing can both be flexibly changed as desired. Here typical triangular and trapezoidal RIPs are established for 3D imaging under triangular and trapezoidal range-intensity correlation algorithms. In addition, a prototype experiment is demonstrated to prove the feasibility of MPTDI.

  19. Viral Infection at High Magnification: 3D Electron Microscopy Methods to Analyze the Architecture of Infected Cells

    PubMed Central

    Romero-Brey, Inés; Bartenschlager, Ralf

    2015-01-01

    As obligate intracellular parasites, viruses need to hijack their cellular hosts and reprogram their machineries in order to replicate their genomes and produce new virions. For the direct visualization of the different steps of a viral life cycle (attachment, entry, replication, assembly and egress) electron microscopy (EM) methods are extremely helpful. While conventional EM has given important information about virus-host cell interactions, the development of three-dimensional EM (3D-EM) approaches provides unprecedented insights into how viruses remodel the intracellular architecture of the host cell. During the last years several 3D-EM methods have been developed. Here we will provide a description of the main approaches and examples of innovative applications. PMID:26633469

  20. Transparent 3D Visualization of Archaeological Remains in Roman Site in Ankara-Turkey with Ground Penetrating Radar Method

    NASA Astrophysics Data System (ADS)

    Kadioglu, S.

    2009-04-01

    Transparent 3D Visualization of Archaeological Remains in Roman Site in Ankara-Turkey with Ground Penetrating Radar Method Selma KADIOGLU Ankara University, Faculty of Engineering, Department of Geophysical Engineering, 06100 Tandogan/ANKARA-TURKEY kadioglu@eng.ankara.edu.tr Anatolia has always been more the point of transit, a bridge between West and East. Anatolia has been a home for ideas moving from all directions. So it is that in the Roman and post-Roman periods the role of Anatolia in general and of Ancyra (the Roman name of Ankara) in particular was of the greatest importance. Now, the visible archaeological remains of Roman period in Ankara are Roman Bath, Gymnasium, the Temple of Augustus of Rome, Street, Theatre, City Defence-Wall. The Caesar Augustus, the first Roman Emperor, conquered Asia Minor in 25 BC. Then a marble temple was built in Ancyra, the administrative capital of province, today the capital of Turkish Republic, Ankara. This monument was consecrated to the Empreror and to the Goddess Rome. This temple is supposed to have built over an earlier temple dedicated to Kybele and Men between 25 -20 BC. After the death of the Augustus in 14AD, a copy of the text of "Res Gestae Divi Augusti" was inscribed on the interior of the pronaos in Latin, whereas a Greek translation is also present on an exterior wall of the cella. In the 5th century, it was converted in to a church by the Byzantines. The aim of this study is to determine old buried archaeological remains in the Augustus temple, Roman Bath and in the governorship agora in Ulus district. These remains were imaged with transparent three dimensional (3D) visualization of the ground penetrating radar (GPR) data. Parallel two dimensional (2D) GPR profile data were acquired in the study areas, and then a 3D data volume were built using parallel 2D GPR data. A simplified amplitude-colour range and appropriate opacity function were constructed and transparent 3D image were obtained to activate buried

  1. The MHOST finite element program: 3-D inelastic analysis methods for hot section components. Volume 3: Systems' manual

    NASA Technical Reports Server (NTRS)

    Nakazawa, Shohei

    1989-01-01

    The internal structure is discussed of the MHOST finite element program designed for 3-D inelastic analysis of gas turbine hot section components. The computer code is the first implementation of the mixed iterative solution strategy for improved efficiency and accuracy over the conventional finite element method. The control structure of the program is covered along with the data storage scheme and the memory allocation procedure and the file handling facilities including the read and/or write sequences.

  2. European Pressurized water Reactor (EPR) SAR ATWS Accident Analyses by using 3D Code Internal Coupling Method

    SciTech Connect

    Gagner, Renata; Lafitte, Helene; Dormeau, Pascal; Stoudt, Roger H.

    2004-07-01

    Anticipated Transients Without Scram (ATWS) accident analyses make part of the Safety Analysis Report of the European Pressurized water Reactor (EPR), covering Risk Reduction Category A (Core Melt Prevention) events. This paper deals with three of the most penalizing RRC-A sequences of ATWS caused by mechanical blockage of the control/shutdown rods, regarding their consequences on the Reactor Coolant System (RCS) and core integrity. A new 3D code internal coupling calculation method has been introduced. (authors)

  3. Light-driven 3D droplet manipulation on flexible optoelectrowetting devices fabricated by a simple spin-coating method.

    PubMed

    Jiang, Dongyue; Park, Sung-Yong

    2016-05-21

    Technical advances in electrowetting-on-dielectric (EWOD) over the past few years have extended our attraction to three-dimensional (3D) devices capable of providing more flexibility and functionality with larger volumetric capacity than conventional 2D planar ones. However, typical 3D EWOD devices require complex and expensive fabrication processes for patterning and wiring of pixelated electrodes that also restrict the minimum droplet size to be manipulated. Here, we present a flexible single-sided continuous optoelectrowetting (SCOEW) device which is not only fabricated by a spin-coating method without the need for patterning and wiring processes, but also enables light-driven 3D droplet manipulations. To provide photoconductive properties, previous optoelectrowetting (OEW) devices have used amorphous silicon (a-Si) typically fabricated through high-temperature processes over 300 °C such as CVD or PECVD. However, most of the commercially-available flexible substrates such as polyethylene terephthalate (PET) and polyethylene naphthalate (PEN) experience serious thermal deformation under such high-temperature processes. Because of this compatibility issue of conventional OEW devices with flexible substrates, light-driven 3D droplet manipulations have not yet been demonstrated on flexible substrates. Our study overcomes this compatibility issue by using a polymer-based photoconductive material, titanium oxide phthalocyanine (TiOPc) and thus SCOEW devices can be simply fabricated on flexible substrates through a low-cost, spin-coating method. In this paper, analytical studies were conducted to understand the effects of light patterns on static contact angles and EWOD forces. For experimental validations of our study, flexible SCOEW devices were successfully fabricated through the TiOPc-based spin-coating method and light-driven droplet manipulations (e.g. transportation, merging, and splitting) have been demonstrated on various 3D terrains such as inclined

  4. Light-driven 3D droplet manipulation on flexible optoelectrowetting devices fabricated by a simple spin-coating method.

    PubMed

    Jiang, Dongyue; Park, Sung-Yong

    2016-05-21

    Technical advances in electrowetting-on-dielectric (EWOD) over the past few years have extended our attraction to three-dimensional (3D) devices capable of providing more flexibility and functionality with larger volumetric capacity than conventional 2D planar ones. However, typical 3D EWOD devices require complex and expensive fabrication processes for patterning and wiring of pixelated electrodes that also restrict the minimum droplet size to be manipulated. Here, we present a flexible single-sided continuous optoelectrowetting (SCOEW) device which is not only fabricated by a spin-coating method without the need for patterning and wiring processes, but also enables light-driven 3D droplet manipulations. To provide photoconductive properties, previous optoelectrowetting (OEW) devices have used amorphous silicon (a-Si) typically fabricated through high-temperature processes over 300 °C such as CVD or PECVD. However, most of the commercially-available flexible substrates such as polyethylene terephthalate (PET) and polyethylene naphthalate (PEN) experience serious thermal deformation under such high-temperature processes. Because of this compatibility issue of conventional OEW devices with flexible substrates, light-driven 3D droplet manipulations have not yet been demonstrated on flexible substrates. Our study overcomes this compatibility issue by using a polymer-based photoconductive material, titanium oxide phthalocyanine (TiOPc) and thus SCOEW devices can be simply fabricated on flexible substrates through a low-cost, spin-coating method. In this paper, analytical studies were conducted to understand the effects of light patterns on static contact angles and EWOD forces. For experimental validations of our study, flexible SCOEW devices were successfully fabricated through the TiOPc-based spin-coating method and light-driven droplet manipulations (e.g. transportation, merging, and splitting) have been demonstrated on various 3D terrains such as inclined

  5. A method for automatic 3D reconstruction based on multiple views from a free-mobile camera

    NASA Astrophysics Data System (ADS)

    Yu, Qingbing; Zhang, Zhijiang

    2004-09-01

    Automatic 3D-reconstruction from an image sequence of an object is described. The construction is based on multiple views from a free-mobile camera and the object is placed on a novel calibration pattern consisting of two concentric circles connected by radial line segments. Compared to other methods of 3D-reconstruction, the approach reduces the restriction of the measurement environment and increases the flexibility of the user. In the first step, the images of each view are calibrated individually to obtain camera information. The calibration pattern is separated from the input image with the erosion-dilation algorithm and the calibration points can be extracted from the pattern image accurately after estimations of two ellipses and lines. Tsai"s two-stage technique is used in calibration process. In the second step, the 3D reconstruction of real object can be subdivided into two parts: the shape reconstruction and texture mapping. With the principle of "shape from silhouettes (SFS)", a bounding cone is constructed from one image using the calibration information and silhouette. The intersection of all bounding cones defines an approximate geometric representation. The experimental results with real object are performed, the reconstruction error <1%, which validate this method"s high efficiency and feasibility.

  6. Comparison of Different 2D and 3D-QSAR Methods on Activity Prediction of Histamine H3 Receptor Antagonists

    PubMed Central

    Dastmalchi, Siavoush; Hamzeh-Mivehroud, Maryam; Asadpour-Zeynali, Karim

    2012-01-01

    Histamine H3 receptor subtype has been the target of several recent drug development programs. Quantitative structure-activity relationship (QSAR) methods are used to predict the pharmaceutically relevant properties of drug candidates whenever it is applicable. The aim of this study was to compare the predictive powers of three different QSAR techniques, namely, multiple linear regression (MLR), artificial neural network (ANN), and HASL as a 3D QSAR method, in predicting the receptor binding affinities of arylbenzofuran histamine H3 receptor antagonists. Genetic algorithm coupled partial least square as well as stepwise multiple regression methods were used to select a number of calculated molecular descriptors to be used in MLR and ANN-based QSAR studies. Using the leave-group-out cross-validation technique, the performances of the MLR and ANN methods were evaluated. The calculated values for the mean absolute percentage error (MAPE), ranging from 2.9 to 3.6, and standard deviation of error of prediction (SDEP), ranging from 0.31 to 0.36, for both MLR and ANN methods were statistically comparable, indicating that both methods perform equally well in predicting the binding affinities of the studied compounds toward the H3 receptors. On the other hand, the results from 3D-QSAR studies using HASL method were not as good as those obtained by 2D methods. It can be concluded that simple traditional approaches such as MLR method can be as reliable as those of more advanced and sophisticated methods like ANN and 3D-QSAR analyses. PMID:25317190

  7. Assessment of a fully 3D Monte Carlo reconstruction method for preclinical PET with iodine-124

    NASA Astrophysics Data System (ADS)

    Moreau, M.; Buvat, I.; Ammour, L.; Chouin, N.; Kraeber-Bodéré, F.; Chérel, M.; Carlier, T.

    2015-03-01

    Iodine-124 is a radionuclide well suited to the labeling of intact monoclonal antibodies. Yet, accurate quantification in preclinical imaging with I-124 is challenging due to the large positron range and a complex decay scheme including high-energy gammas. The aim of this work was to assess the quantitative performance of a fully 3D Monte Carlo (MC) reconstruction for preclinical I-124 PET. The high-resolution small animal PET Inveon (Siemens) was simulated using GATE 6.1. Three system matrices (SM) of different complexity were calculated in addition to a Siddon-based ray tracing approach for comparison purpose. Each system matrix accounted for a more or less complete description of the physics processes both in the scanned object and in the PET scanner. One homogeneous water phantom and three heterogeneous phantoms including water, lungs and bones were simulated, where hot and cold regions were used to assess activity recovery as well as the trade-off between contrast recovery and noise in different regions. The benefit of accounting for scatter, attenuation, positron range and spurious coincidences occurring in the object when calculating the system matrix used to reconstruct I-124 PET images was highlighted. We found that the use of an MC SM including a thorough modelling of the detector response and physical effects in a uniform water-equivalent phantom was efficient to get reasonable quantitative accuracy in homogeneous and heterogeneous phantoms. Modelling the phantom heterogeneities in the SM did not necessarily yield the most accurate estimate of the activity distribution, due to the high variance affecting many SM elements in the most sophisticated SM.

  8. Light redirective display panel and a method of making a light redirective display panel

    DOEpatents

    Veligdan, James T.

    2002-01-01

    An optical display panel which provides improved light intensity at a viewing angle by redirecting light emitting from the viewing screen, and a method of making a light redirective display panel, are disclosed. The panel includes an inlet face at one end for receiving light, and an outlet screen at an opposite end for displaying the light. The inlet face is defined at one end of a transparent body, which body may be formed by a plurality of waveguides, and the outlet screen is defined at an opposite end of the body. The screen includes light redirective elements at the outlet screen for re-directing light emitting from the outlet screen. The method includes stacking a plurality of glass sheets, with a layer of adhesive or epoxy between each sheet, curing the adhesive to form a stack, placing the stack against a saw and cutting the stack at two opposite ends to form a wedge-shaped panel having an inlet face and an outlet face, and forming at the outlet face a plurality of light redirective elements which direct light incident on the outlet face into a controlled light cone.

  9. Light Redirective Display Panel And A Method Of Making A Light Redirective Display Panel

    DOEpatents

    Veligdan, James T.

    2005-07-26

    An optical display panel which provides improved light intensity at a viewing angle by redirecting light emitting from the viewing screen, and a method of making a light redirective display panel, are disclosed. The panel includes an inlet face at one end for receiving light, and an outlet screen at an opposite end for displaying the light. The inlet face is defined at one end of a transparent body, which body may be formed by a plurality of waveguides, and the outlet screen is defined at an opposite end of the body. The screen includes light redirective elements at the outlet screen for re-directing light emitting from the outlet screen. The method includes stacking a plurality of glass sheets, with a layer of adhesive or epoxy between each sheet, curing the adhesive to form a stack, placing the stack against a saw and cutting the stack at two opposite ends to form a wedge-shaped panel having an inlet face and an outlet face, and forming at the outlet face a plurality of light redirective elements which direct light incident on the outlet face into a controlled light cone.

  10. Cardiac C-arm computed tomography using a 3D + time ROI reconstruction method with spatial and temporal regularization

    SciTech Connect

    Mory, Cyril; Auvray, Vincent; Zhang, Bo; Grass, Michael; Schäfer, Dirk; Chen, S. James; Carroll, John D.; Rit, Simon; Peyrin, Françoise; Douek, Philippe; Boussel, Loïc

    2014-02-15

    Purpose: Reconstruction of the beating heart in 3D + time in the catheter laboratory using only the available C-arm system would improve diagnosis, guidance, device sizing, and outcome control for intracardiac interventions, e.g., electrophysiology, valvular disease treatment, structural or congenital heart disease. To obtain such a reconstruction, the patient's electrocardiogram (ECG) must be recorded during the acquisition and used in the reconstruction. In this paper, the authors present a 4D reconstruction method aiming to reconstruct the heart from a single sweep 10 s acquisition. Methods: The authors introduce the 4D RecOnstructiOn using Spatial and TEmporal Regularization (short 4D ROOSTER) method, which reconstructs all cardiac phases at once, as a 3D + time volume. The algorithm alternates between a reconstruction step based on conjugate gradient and four regularization steps: enforcing positivity, averaging along time outside a motion mask that contains the heart and vessels, 3D spatial total variation minimization, and 1D temporal total variation minimization. Results: 4D ROOSTER recovers the different temporal representations of a moving Shepp and Logan phantom, and outperforms both ECG-gated simultaneous algebraic reconstruction technique and prior image constrained compressed sensing on a clinical case. It generates 3D + time reconstructions with sharp edges which can be used, for example, to estimate the patient's left ventricular ejection fraction. Conclusions: 4D ROOSTER can be applied for human cardiac C-arm CT, and potentially in other dynamic tomography areas. It can easily be adapted to other problems as regularization is decoupled from projection and back projection.

  11. Subsonic panel method for designing wing surfaces from pressure distribution

    NASA Technical Reports Server (NTRS)

    Bristow, D. R.; Hawk, J. D.

    1983-01-01

    An iterative method has been developed for designing wing section contours corresponding to a prescribed subcritical distribution of pressure. The calculations are initialized by using a surface panel method to analyze a baseline wing or wing-fuselage configuration. A first-order expansion to the baseline panel method equations is then used to calculate a matrix containing the partial derivative of potential at each control point with respect to each unknown geometry parameter. In every iteration cycle, the matrix is used both to calculate the geometry perturbation and to analyze the perturbed geometry. The distribution of potential on the perturbed geometry is established by simple linear extrapolation from the baseline solution. The extrapolated potential is converted to pressure by Bernoulli's equation. Not only is the accuracy of the approach good for very large perturbations, but the computing cost of each complete iteration cycle is substantially less than one analysis solution by a conventional panel method.

  12. A 3D shape retrieval method for orthogonal fringe projection based on a combination of variational image decomposition and variational mode decomposition

    NASA Astrophysics Data System (ADS)

    Li, Biyuan; Tang, Chen; Zhu, Xinjun; Chen, Xia; Su, Yonggang; Cai, Yuanxue

    2016-11-01

    The orthogonal fringe projection technique has as wide as long practical application nowadays. In this paper, we propose a 3D shape retrieval method for orthogonal composite fringe projection based on a combination of variational image decomposition (VID) and variational mode decomposition (VMD). We propose a new image decomposition model to extract the orthogonal fringe. Then we introduce the VMD method to separate the horizontal and vertical fringe from the orthogonal fringe. Lastly, the 3D shape information is obtained by the differential 3D shape retrieval method (D3D). We test the proposed method on a simulated pattern and two actual objects with edges or abrupt changes in height, and compare with the recent, related and advanced differential 3D shape retrieval method (D3D) in terms of both quantitative evaluation and visual quality. The experimental results have demonstrated the validity of the proposed method.

  13. Characterizing 3D grain size distributions from 2D sections in mylonites using a modified version of the Saltykov method

    NASA Astrophysics Data System (ADS)

    Lopez-Sanchez, Marco; Llana-Fúnez, Sergio

    2016-04-01

    The understanding of creep behaviour in rocks requires knowledge of 3D grain size distributions (GSD) that result from dynamic recrystallization processes during deformation. The methods to estimate directly the 3D grain size distribution -serial sectioning, synchrotron or X-ray-based tomography- are expensive, time-consuming and, in most cases and at best, challenging. This means that in practice grain size distributions are mostly derived from 2D sections. Although there are a number of methods in the literature to derive the actual 3D grain size distributions from 2D sections, the most popular in highly deformed rocks is the so-called Saltykov method. It has though two major drawbacks: the method assumes no interaction between grains, which is not true in the case of recrystallised mylonites; and uses histograms to describe distributions, which limits the quantification of the GSD. The first aim of this contribution is to test whether the interaction between grains in mylonites, i.e. random grain packing, affects significantly the GSDs estimated by the Saltykov method. We test this using the random resampling technique in a large data set (n = 12298). The full data set is built from several parallel thin sections that cut a completely dynamically recrystallized quartz aggregate in a rock sample from a Variscan shear zone in NW Spain. The results proved that the Saltykov method is reliable as long as the number of grains is large (n > 1000). Assuming that a lognormal distribution is an optimal approximation for the GSD in a completely dynamically recrystallized rock, we introduce an additional step to the Saltykov method, which allows estimating a continuous probability distribution function of the 3D grain size population. The additional step takes the midpoints of the classes obtained by the Saltykov method and fits a lognormal distribution with a trust region using a non-linear least squares algorithm. The new protocol is named the two-step method. The

  14. Coordination between Understanding Historic Buildings and BIM Modelling: A 3D-Output Oriented and typological Data Capture Method

    NASA Astrophysics Data System (ADS)

    Li, K.; Li, S. J.; Liu, Y.; Wang, W.; Wu, C.

    2015-08-01

    At the present, in trend of shifting the old 2D-output oriented survey to a new 3D-output oriented survey based on BIM technology, the corresponding working methods and workflow for data capture, process, representation, etc. have to be changed.Based on case study of two buildings in the Summer Palace of Beijing, and Jiayuguan Pass at the west end of the Great Wall (both World Heritage sites), this paper puts forward a "structure-and-type method" by means of typological method used in archaeology, Revit family system, and the tectonic logic of building to realize a good coordination between understanding of historic buildings and BIM modelling.

  15. 3-D inelastic analysis methods for hot section components (base program). [turbine blades, turbine vanes, and combustor liners

    NASA Technical Reports Server (NTRS)

    Wilson, R. B.; Bak, M. J.; Nakazawa, S.; Banerjee, P. K.

    1984-01-01

    A 3-D inelastic analysis methods program consists of a series of computer codes embodying a progression of mathematical models (mechanics of materials, special finite element, boundary element) for streamlined analysis of combustor liners, turbine blades, and turbine vanes. These models address the effects of high temperatures and thermal/mechanical loadings on the local (stress/strain) and global (dynamics, buckling) structural behavior of the three selected components. These models are used to solve 3-D inelastic problems using linear approximations in the sense that stresses/strains and temperatures in generic modeling regions are linear functions of the spatial coordinates, and solution increments for load, temperature and/or time are extrapolated linearly from previous information. Three linear formulation computer codes, referred to as MOMM (Mechanics of Materials Model), MHOST (MARC-Hot Section Technology), and BEST (Boundary Element Stress Technology), were developed and are described.

  16. Bare-nucleus astrophysical factor of the He3(d,p)He4 reaction via the ``Trojan horse'' method

    NASA Astrophysics Data System (ADS)

    Cognata, M. La; Spitaleri, C.; Tumino, A.; Typel, S.; Cherubini, S.; Lamia, L.; Musumarra, A.; Pizzone, R. G.; Rinollo, A.; Rolfs, C.; Romano, S.; Schürmann, D.; Strieder, F.

    2005-12-01

    The He3(d,p)He4 reaction has been studied from Ec.m.=600 keV down to astrophysical energies by means of the “Trojan horse” method using the Li6(He3,pα)He4 three-body reaction at Elab=5 and 6 MeV. Coincidence spectra were measured in kinematic conditions favoring the quasifree He3+H2 process. The bare astrophysical factor Sb(E) for the He3(d,p)He4 reaction was extracted from the three-body cross section in the modified plane-wave Born approximation. Comparison with the Sb extrapolation from the free two-body data is presented. The independent estimate of the screening potential as obtained with the present work seems to confirm the theoretical adiabatic limit.

  17. The Combined Finite-Discrete Element Method applied to the Study of Rock Fracturing Behavior in 3D

    SciTech Connect

    Rougier, Esteban; Bradley, Christopher R.; Broom, Scott T.; Knight, Earl E.; Munjiza, Ante; Sussman, Aviva J.; Swift, Robert P.

    2011-01-01

    Since its introduction the combined finite-discrete element method (FEM/DEM), has become an excellent tool to address a wide range of problems involving fracturing and fragmentation of solids. Within the context of rock mechanics, the FEM/DEM method has been applied to many complex industrial problems such as block caving, deep mining techniques, rock blasting, seismic waves, packing problems, rock crushing problems, etc. In the real world most of the problems involving fracture and fragmentation of solids are three dimensional problems. With the aim of addressing these problems an improved 2D/3D FEM/DEM capability has been developed at Los Alamos National Laboratory (LANL). These capabilities include state of the art 3D contact detection, contact interaction, constitutive material models, and fracture models. In this paper, Split Hopkinson Pressure Bar (SHPB) Brazilian experiments are simulated using this improved 2D/3D FEM/DEM approach which is implemented in LANL's MUNROU (Munjiza-Rougier) code. The results presented in this work show excellent agreement with both the SHPB experiments and previous 2D numerical simulations performed by other FEM/DEM research groups.

  18. Fabrication of 3D photocatalytic α-Fe2O3 structure using direct ink writing method

    NASA Astrophysics Data System (ADS)

    Li, Yayun; Li, Bo; Li, Longtu

    2014-02-01

    Three-dimensional (3D) photocatalytic devices are economical and environmental, since they can be easily recycled and reused. In this paper, a kind of 3D photocatalytic device with a rod diameter of 250 μm was fabricated using the aqueous-based α-Fe2O3 ceramic inks by direct ink writing (DIW) method. The properties of the DIW woodpile samples were investigated by X-ray diffraction (XRD), scanning electron microscope (SEM) and optical microscope. The result shows that the ink with solid content of 71.4 wt.% exhibits a shear thinning behavior and proper viscoelastic properties, which ensure a feasible extrusion in the whole shaping process. The sample sintered at 800°C in air causes photocatalytic degradation of methylene blue (MB) solution under the ultraviolet (UV) light. The photocatalytic properties of the α-Fe2O3 woodpile structure was characterized by the UV-visible light spectrophotometer, and it was found to be better than that of bulk sample with same weight for its higher specific surface. The DIW technique would offer a potential method for the design and fabrication of 3D photocatalytic devices.

  19. Discovering new methods of data fusion, visualization, and analysis in 3D immersive environments for hyperspectral and laser altimetry data

    NASA Astrophysics Data System (ADS)

    Moore, C. A.; Gertman, V.; Olsoy, P.; Mitchell, J.; Glenn, N. F.; Joshi, A.; Norpchen, D.; Shrestha, R.; Pernice, M.; Spaete, L.; Grover, S.; Whiting, E.; Lee, R.

    2011-12-01

    Immersive virtual reality environments such as the IQ-Station or CAVE° (Cave Automated Virtual Environment) offer new and exciting ways to visualize and explore scientific data and are powerful research and educational tools. Combining remote sensing data from a range of sensor platforms in immersive 3D environments can enhance the spectral, textural, spatial, and temporal attributes of the data, which enables scientists to interact and analyze the data in ways never before possible. Visualization and analysis of large remote sensing datasets in immersive environments requires software customization for integrating LiDAR point cloud data with hyperspectral raster imagery, the generation of quantitative tools for multidimensional analysis, and the development of methods to capture 3D visualizations for stereographic playback. This study uses hyperspectral and LiDAR data acquired over the China Hat geologic study area near Soda Springs, Idaho, USA. The data are fused into a 3D image cube for interactive data exploration and several methods of recording and playback are investigated that include: 1) creating and implementing a Virtual Reality User Interface (VRUI) patch configuration file to enable recording and playback of VRUI interactive sessions within the CAVE and 2) using the LiDAR and hyperspectral remote sensing data and GIS data to create an ArcScene 3D animated flyover, where left- and right-eye visuals are captured from two independent monitors for playback in a stereoscopic player. These visualizations can be used as outreach tools to demonstrate how integrated data and geotechnology techniques can help scientists see, explore, and more adequately comprehend scientific phenomena, both real and abstract.

  20. An LS-MARS method for modeling regional 3D ionospheric electron density based on GPS data and IRI

    NASA Astrophysics Data System (ADS)

    Kao, Szu-Pyng; Chen, Yao-Chung; Ning, Fang-Shii; Tu, Yuh-Min

    2015-05-01

    The methods of developing an accurate and effective ionospheric electron density (IED) model have greatly interested ionosphere researchers. Numerous scholars have proposed many effective and reliable models and methods of global positioning system (GPS)-based computerized ionospheric tomography (CIT) in the past decades. This study introduced a new function-based CIT method, namely the LS-MARS (Least Squares method-Multivariate Adaptive Regression Splines), combining MARS with IEDs calculated by International Reference Ionosphere (IRI) to automatically choose the best representing basis functions for the three-dimensional (3D) electron density inside that modeling area. This selected basis functions was substituted into the observation equation of the GPS total electron content (TEC) to calculate the design matrix. Finally, the weighted damped least squares (WDLS) were adopted to reestimate the IED model coefficients. In contrast to common function-based CIT methods, the LS-MARS can be used to attain optimal 3D model automatically, flexibly, adaptively based on the IRI without a priori knowledge of the IED distribution mathematical function. The findings indicated that the LS-MARS model had a smaller recovery TEC error than did the MARS_IRI2012 model, and the VTEC calculated using the LS-MARS model was closer to the VTEC obtained from International GNSS Service (IGS) final IONEX files than was the VTEC calculated using the MARS_IRI2012 and IRI2012. Therefore, this method exhibits strong modeling effectiveness and reliability, and can be an efficient alternative method for estimating regional 3D IED models.

  1. Methods for Assessing Honeycomb Sandwich Panel Wrinkling Failures

    NASA Technical Reports Server (NTRS)

    Zalewski, Bart F.; Dial, William B.; Bednarcyk, Brett A.

    2012-01-01

    Efficient closed-form methods for predicting the facesheet wrinkling failure mode in sandwich panels are assessed. Comparisons were made with finite element model predictions for facesheet wrinkling, and a validated closed-form method was implemented in the HyperSizer structure sizing software.

  2. A new method for combining live action and computer graphics in stereoscopic 3D

    NASA Astrophysics Data System (ADS)

    Rupkalvis, John A.; Gillen, Ron

    2008-02-01

    A primary requirement when elements are to be combined stereoscopically, is that homologous points in each eye view of each element have identical parallax separation at any point of interaction. If this is not done, the image parts on one element will appear to be at a different distance from the corresponding or associated parts on the other element. This results in a visual discontinuity that appears very unnatural. For example, if a live actor were to appear to "shake hands" with a cartoon character, a very natural appearing juncture may appear to be the case when seen in 2-D, but their hands may appear to miss when seen in 3-D. Previous efforts to compensate, or correct these errors have involved painstaking time-consuming trial-and-error tests. In the area of pure animation, efforts to make cartoon characters appear more realistic were developed. A "motion tracking" technique was developed. This involves an actor wearing a special suit with indicator marks at various points on their body. The actor walks through the scene, then the animator tracks the points using motion capture software. Because live action and CG elements can interact or change at several different points and levels within a scene, additional requirements must also be addressed. "Occlusions" occur when one object passes in front of another. A particular tracking point may appear in one eye-view, and not the other. When Z-axis differentials are to be considered in the live action as well as the CG elements, and both are to interact with each other, both eye-views must be tracked, especially at points of occlusion. A new approach would be to generate a three dimensional grid, within which the action is to take place. This grid can be projected, onto the stage where the live action part is to take place. When differential occlusions occur, the grid may be seen and CG elements plotted in reference to it. Because of the capability of precisely locating points in a digital image, a pixel

  3. A fully implicit method for 3D quasi-steady state magnetic advection-diffusion.

    SciTech Connect

    Siefert, Christopher; Robinson, Allen Conrad

    2009-09-01

    We describe the implementation of a prototype fully implicit method for solving three-dimensional quasi-steady state magnetic advection-diffusion problems. This method allows us to solve the magnetic advection diffusion equations in an Eulerian frame with a fixed, user-prescribed velocity field. We have verified the correctness of method and implementation on two standard verification problems, the Solberg-White magnetic shear problem and the Perry-Jones-White rotating cylinder problem.

  4. Micro 3D cell culture systems for cellular behavior studies: Culture matrices, devices, substrates, and in-situ sensing methods.

    PubMed

    Choi, Jonghoon; Lee, Eun Kyu; Choo, Jaebum; Yuh, Junhan; Hong, Jong Wook

    2015-09-01

    Microfabricated systems equipped with 3D cell culture devices and in-situ cellular biosensing tools can be a powerful bionanotechnology platform to investigate a variety of biomedical applications. Various construction substrates such as plastics, glass, and paper are used for microstructures. When selecting a construction substrate, a key consideration is a porous microenvironment that allows for spheroid growth and mimics the extracellular matrix (ECM) of cell aggregates. Various bio-functionalized hydrogels are ideal candidates that mimic the natural ECM for 3D cell culture. When selecting an optimal and appropriate microfabrication method, both the intended use of the system and the characteristics and restrictions of the target cells should be carefully considered. For highly sensitive and near-cell surface detection of excreted cellular compounds, SERS-based microsystems capable of dual modal imaging have the potential to be powerful tools; however, the development of optical reporters and nanoprobes remains a key challenge. We expect that the microsystems capable of both 3D cell culture and cellular response monitoring would serve as excellent tools to provide fundamental cellular behavior information for various biomedical applications such as metastasis, wound healing, high throughput screening, tissue engineering, regenerative medicine, and drug discovery and development. PMID:26358782

  5. A general approach for time-supersampling of 3D-PIV data by the vortex-in-cell method

    NASA Astrophysics Data System (ADS)

    Scarano, Fulvio; Schneiders, Jan; Dwight, Richard; Aerospace Engineering/Aerodynamics Team

    2013-11-01

    Advancements of tomographic PIV [1] have led into 3D time-resolved experiments to study the dynamical evolution of 3D turbulent flows [2]. The known bottleneck of Tomo-PIV is the high laser power required to illuminate large volumes in airflows, which becomes critical beyond 10 kHz. Time-super-sampling is an approach to reduce the sampling rate, proven for frozen turbulence where the advection model yields a significant increase of temporal resolution [3]. Instead, in separated flows, the advection principle yields unacceptable distortions. The use of Navier-Stokes numerical calculations with the vortex-in-cell (VIC) method is proposed herein. The assumption is made of inviscid incompressible flow [4]. The spatial-resolution of the data is exploited to increase the temporal resolution. The dynamical evolution of the vorticity and velocity field between subsequent snapshots in the 3D domain is numerically evaluated. The verification with fully time resolved data of a circular jet indicates a substantial increase of temporal resolution. Interestingly, data sampled below the Nyquist limit could be reconstructed faithfully, indicating the potential of VIC in alleviating requirements on PIV measurement rate. Work supported by the European Research Council grant 202887.

  6. Proteus-MOC: A 3D deterministic solver incorporating 2D method of characteristics

    SciTech Connect

    Marin-Lafleche, A.; Smith, M. A.; Lee, C.

    2013-07-01

    A new transport solution methodology was developed by combining the two-dimensional method of characteristics with the discontinuous Galerkin method for the treatment of the axial variable. The method, which can be applied to arbitrary extruded geometries, was implemented in PROTEUS-MOC and includes parallelization in group, angle, plane, and space using a top level GMRES linear algebra solver. Verification tests were performed to show accuracy and stability of the method with the increased number of angular directions and mesh elements. Good scalability with parallelism in angle and axial planes is displayed. (authors)

  7. Data-adapted moving least squares method for 3-D image interpolation

    NASA Astrophysics Data System (ADS)

    Jang, Sumi; Nam, Haewon; Lee, Yeon Ju; Jeong, Byeongseon; Lee, Rena; Yoon, Jungho

    2013-12-01

    In this paper, we present a nonlinear three-dimensional interpolation scheme for gray-level medical images. The scheme is based on the moving least squares method but introduces a fundamental modification. For a given evaluation point, the proposed method finds the local best approximation by reproducing polynomials of a certain degree. In particular, in order to obtain a better match to the local structures of the given image, we employ locally data-adapted least squares methods that can improve the classical one. Some numerical experiments are presented to demonstrate the performance of the proposed method. Five types of data sets are used: MR brain, MR foot, MR abdomen, CT head, and CT foot. From each of the five types, we choose five volumes. The scheme is compared with some well-known linear methods and other recently developed nonlinear methods. For quantitative comparison, we follow the paradigm proposed by Grevera and Udupa (1998). (Each slice is first assumed to be unknown then interpolated by each method. The performance of each interpolation method is assessed statistically.) The PSNR results for the estimated volumes are also provided. We observe that the new method generates better results in both quantitative and visual quality comparisons.

  8. Precision calibration method for binocular vision measurement systems based on arbitrary translations and 3D-connection information

    NASA Astrophysics Data System (ADS)

    Yang, Jinghao; Jia, Zhenyuan; Liu, Wei; Fan, Chaonan; Xu, Pengtao; Wang, Fuji; Liu, Yang

    2016-10-01

    Binocular vision systems play an important role in computer vision, and high-precision system calibration is a necessary and indispensable process. In this paper, an improved calibration method for binocular stereo vision measurement systems based on arbitrary translations and 3D-connection information is proposed. First, a new method for calibrating the intrinsic parameters of binocular vision system based on two translations with an arbitrary angle difference is presented, which reduces the effect of the deviation of the motion actuator on calibration accuracy. This method is simpler and more accurate than existing active-vision calibration methods and can provide a better initial value for the determination of extrinsic parameters. Second, a 3D-connection calibration and optimization method is developed that links the information of the calibration target in different positions, further improving the accuracy of the system calibration. Calibration experiments show that the calibration error can be reduced to 0.09%, outperforming traditional methods for the experiments of this study.

  9. Benchmark Study of 3D Pore-scale Flow and Solute Transport Simulation Methods

    NASA Astrophysics Data System (ADS)

    Scheibe, T. D.; Yang, X.; Mehmani, Y.; Perkins, W. A.; Pasquali, A.; Schoenherr, M.; Kim, K.; Perego, M.; Parks, M. L.; Trask, N.; Balhoff, M.; Richmond, M. C.; Geier, M.; Krafczyk, M.; Luo, L. S.; Tartakovsky, A. M.

    2015-12-01

    Multiple numerical approaches have been developed to simulate porous media fluid flow and solute transport at the pore scale. These include 1) methods that explicitly model the three-dimensional geometry of pore spaces and 2) methods that conceptualize the pore space as a topologically consistent set of stylized pore bodies and pore throats. In previous work we validated a model of the first type, using computational fluid dynamics (CFD) codes employing standard finite volume method (FVM), against magnetic resonance velocimetry (MRV) measurements of pore-scale velocities. Here we expand that benchmark study to include additional models of the first type based on the immersed-boundary method (IMB), lattice Boltzmann method (LBM), and smoothed particle hydrodynamics (SPH), as well as a model of the second type, a pore-network model (PNM). While the PNM approach is computationally much less demanding than direct numerical simulation methods, the effect of conceptualizing complex three-dimensional pore geometries in the manner of PNMs has not been fully determined. We apply all five approaches (FVM-based CFD, IMB, LBM, SPH and PNM) to simulate pore-scale velocity distributions and nonreactive solute transport, and intercompare the model results. Comparisons are drawn both in terms of macroscopic variables (e.g., permeability, solute breakthrough curves) and microscopic variables (e.g., local velocities and concentrations). Generally good agreement was achieved among the various approaches, but some differences were observed depending on the model context. The benchmark study was challenging because of variable capabilities of the codes, and inspired some code enhancements to allow consistent comparison of flow and transport simulations across the full suite of methods. This study provides support for confidence in a variety of pore-scale modeling methods, and motivates further development and application of pore-scale simulation methods.

  10. Development of direct-inverse 3-D methods for applied transonic aerodynamic wing design and analysis

    NASA Technical Reports Server (NTRS)

    Carlson, Leland A.

    1989-01-01

    An inverse wing design method was developed around an existing transonic wing analysis code. The original analysis code, TAWFIVE, has as its core the numerical potential flow solver, FLO30, developed by Jameson and Caughey. Features of the analysis code include a finite-volume formulation; wing and fuselage fitted, curvilinear grid mesh; and a viscous boundary layer correction that also accounts for viscous wake thickness and curvature. The development of the inverse methods as an extension of previous methods existing for design in Cartesian coordinates is presented. Results are shown for inviscid wing design cases in super-critical flow regimes. The test cases selected also demonstrate the versatility of the design method in designing an entire wing or discontinuous sections of a wing.

  11. Solving 3D relativistic hydrodynamical problems with weighted essentially nonoscillatory discontinuous Galerkin methods

    NASA Astrophysics Data System (ADS)

    Bugner, Marcus; Dietrich, Tim; Bernuzzi, Sebastiano; Weyhausen, Andreas; Brügmann, Bernd

    2016-10-01

    Discontinuous Galerkin (DG) methods coupled to weighted essentially nonoscillatory (WENO) algorithms allow high order convergence for smooth problems and for the simulation of discontinuities and shocks. In this work, we investigate WENO-DG algorithms in the context of numerical general relativity, in particular for general relativistic hydrodynamics. We implement the standard WENO method at different orders, a compact (simple) WENO scheme, as well as an alternative subcell evolution algorithm. To evaluate the performance of the different numerical schemes, we study nonrelativistic, special relativistic, and general relativistic test beds. We present the first three-dimensional simulations of general relativistic hydrodynamics, albeit for a fixed spacetime background, within the framework of WENO-DG methods. The most important test bed is a single Tolman-Oppenheimer-Volkoff star in three dimensions, showing that long term stable simulations of single isolated neutron stars can be obtained with WENO-DG methods.

  12. Novel Methods for 3D Numerical Simulation of Meteor Radar Reflections

    NASA Astrophysics Data System (ADS)

    Räbinä, J.; Mönkölä, S.; Rossi, T.; Markkanen, J.; Gritsevich, M.; Muinonen, K.

    2016-08-01

    We model the radar reflections in a three-dimensional space as time-harmonic electromagnetic scattering from plasmatic obstacles. We introduce two novel methods for numerical simulation of meteor radar reflections.

  13. Intercomparison of 3D pore-scale flow and solute transport simulation methods

    SciTech Connect

    Mehmani, Yashar; Schoenherr, Martin; Pasquali, Andrea; Perkins, William A.; Kim, Kyungjoo; Perego, Mauro; Parks, Michael L.; Balhoff, Matthew T.; Richmond, Marshall C.; Geier, Martin; Krafczyk, Manfred; Luo, Li -Shi; Tartakovsky, Alexandre M.; Yang, Xiaofan; Scheibe, Timothy D.; Trask, Nathaniel

    2015-09-28

    Multiple numerical approaches have been developed to simulate porous media fluid flow and solute transport at the pore scale. These include 1) methods that explicitly model the three-dimensional geometry of pore spaces and 2) methods that conceptualize the pore space as a topologically consistent set of stylized pore bodies and pore throats. In previous work we validated a model of the first type, using computational fluid dynamics (CFD) codes employing a standard finite volume method (FVM), against magnetic resonance velocimetry (MRV) measurements of pore-scale velocities. Here we expand that validation to include additional models of the first type based on the lattice Boltzmann method (LBM) and smoothed particle hydrodynamics (SPH), as well as a model of the second type, a pore-network model (PNM). The PNM approach used in the current study was recently improved and demonstrated to accurately simulate solute transport in a two-dimensional experiment. While the PNM approach is computationally much less demanding than direct numerical simulation methods, the effect of conceptualizing complex three-dimensional pore geometries on solute transport in the manner of PNMs has not been fully determined. We apply all four approaches (FVM-based CFD, LBM, SPH and PNM) to simulate pore-scale velocity distributions and (for capable codes) nonreactive solute transport, and intercompare the model results. Comparisons are drawn both in terms of macroscopic variables (e.g., permeability, solute breakthrough curves) and microscopic variables (e.g., local velocities and concentrations). Generally good agreement was achieved among the various approaches, but some differences were observed depending on the model context. The intercomparison work was challenging because of variable capabilities of the codes, and inspired some code enhancements to allow consistent comparison of flow and transport simulations across the full suite of methods. This paper provides support for confidence

  14. Intercomparison of 3D pore-scale flow and solute transport simulation methods

    DOE PAGES

    Mehmani, Yashar; Schoenherr, Martin; Pasquali, Andrea; Perkins, William A.; Kim, Kyungjoo; Perego, Mauro; Parks, Michael L.; Balhoff, Matthew T.; Richmond, Marshall C.; Geier, Martin; et al

    2015-09-28

    Multiple numerical approaches have been developed to simulate porous media fluid flow and solute transport at the pore scale. These include 1) methods that explicitly model the three-dimensional geometry of pore spaces and 2) methods that conceptualize the pore space as a topologically consistent set of stylized pore bodies and pore throats. In previous work we validated a model of the first type, using computational fluid dynamics (CFD) codes employing a standard finite volume method (FVM), against magnetic resonance velocimetry (MRV) measurements of pore-scale velocities. Here we expand that validation to include additional models of the first type based onmore » the lattice Boltzmann method (LBM) and smoothed particle hydrodynamics (SPH), as well as a model of the second type, a pore-network model (PNM). The PNM approach used in the current study was recently improved and demonstrated to accurately simulate solute transport in a two-dimensional experiment. While the PNM approach is computationally much less demanding than direct numerical simulation methods, the effect of conceptualizing complex three-dimensional pore geometries on solute transport in the manner of PNMs has not been fully determined. We apply all four approaches (FVM-based CFD, LBM, SPH and PNM) to simulate pore-scale velocity distributions and (for capable codes) nonreactive solute transport, and intercompare the model results. Comparisons are drawn both in terms of macroscopic variables (e.g., permeability, solute breakthrough curves) and microscopic variables (e.g., local velocities and concentrations). Generally good agreement was achieved among the various approaches, but some differences were observed depending on the model context. The intercomparison work was challenging because of variable capabilities of the codes, and inspired some code enhancements to allow consistent comparison of flow and transport simulations across the full suite of methods. This paper provides support for

  15. Intercomparison of 3D pore-scale flow and solute transport simulation methods

    NASA Astrophysics Data System (ADS)

    Yang, Xiaofan; Mehmani, Yashar; Perkins, William A.; Pasquali, Andrea; Schönherr, Martin; Kim, Kyungjoo; Perego, Mauro; Parks, Michael L.; Trask, Nathaniel; Balhoff, Matthew T.; Richmond, Marshall C.; Geier, Martin; Krafczyk, Manfred; Luo, Li-Shi; Tartakovsky, Alexandre M.; Scheibe, Timothy D.

    2016-09-01

    Multiple numerical approaches have been developed to simulate porous media fluid flow and solute transport at the pore scale. These include 1) methods that explicitly model the three-dimensional geometry of pore spaces and 2) methods that conceptualize the pore space as a topologically consistent set of stylized pore bodies and pore throats. In previous work we validated a model of the first type, using computational fluid dynamics (CFD) codes employing a standard finite volume method (FVM), against magnetic resonance velocimetry (MRV) measurements of pore-scale velocities. Here we expand that validation to include additional models of the first type based on the lattice Boltzmann method (LBM) and smoothed particle hydrodynamics (SPH), as well as a model of the second type, a pore-network model (PNM). The PNM approach used in the current study was recently improved and demonstrated to accurately simulate solute transport in a two-dimensional experiment. While the PNM approach is computationally much less demanding than direct numerical simulation methods, the effect of conceptualizing complex three-dimensional pore geometries on solute transport in the manner of PNMs has not been fully determined. We apply all four approaches (FVM-based CFD, LBM, SPH and PNM) to simulate pore-scale velocity distributions and (for capable codes) nonreactive solute transport, and intercompare the model results. Comparisons are drawn both in terms of macroscopic variables (e.g., permeability, solute breakthrough curves) and microscopic variables (e.g., local velocities and concentrations). Generally good agreement was achieved among the various approaches, but some differences were observed depending on the model context. The intercomparison work was challenging because of variable capabilities of the codes, and inspired some code enhancements to allow consistent comparison of flow and transport simulations across the full suite of methods. This study provides support for confidence

  16. The linearly scaling 3D fragment method for large scale electronic structure calculations

    SciTech Connect

    Zhao, Zhengji; Meza, Juan; Lee, Byounghak; Shan, Hongzhang; Strohmaier, Erich; Bailey, David; Wang, Lin-Wang

    2009-07-28

    The Linearly Scaling three-dimensional fragment (LS3DF) method is an O(N) ab initio electronic structure method for large-scale nano material simulations. It is a divide-and-conquer approach with a novel patching scheme that effectively cancels out the artificial boundary effects, which exist in all divide-and-conquer schemes. This method has made ab initio simulations of thousand-atom nanosystems feasible in a couple of hours, while retaining essentially the same accuracy as the direct calculation methods. The LS3DF method won the 2008 ACM Gordon Bell Prize for algorithm innovation. Our code has reached 442 Tflop/s running on 147,456 processors on the Cray XT5 (Jaguar) at OLCF, and has been run on 163,840 processors on the Blue Gene/P (Intrepid) at ALCF, and has been applied to a system containing 36,000 atoms. In this paper, we will present the recent parallel performance results of this code, and will apply the method to asymmetric CdSe/CdS core/shell nanorods, which have potential applications in electronic devices and solar cells.

  17. The Linearly Scaling 3D Fragment Method for Large Scale Electronic Structure Calculations

    SciTech Connect

    Zhao, Zhengji; Meza, Juan; Lee, Byounghak; Shan, Hongzhang; Strohmaier, Erich; Bailey, David; Wang, Lin-Wang

    2009-06-26

    The Linearly Scaling three-dimensional fragment (LS3DF) method is an O(N) ab initio electronic structure method for large-scale nano material simulations. It is a divide-and-conquer approach with a novel patching scheme that effectively cancels out the artificial boundary effects, which exist in all divide-and-conquer schemes. This method has made ab initio simulations of thousand-atom nanosystems feasible in a couple of hours, while retaining essentially the same accuracy as the direct calculation methods. The LS3DF method won the 2008 ACM Gordon Bell Prize for algorithm innovation. Our code has reached 442 Tflop/s running on 147,456 processors on the Cray XT5 (Jaguar) at OLCF, and has been run on 163,840 processors on the Blue Gene/P (Intrepid) at ALCF, and has been applied to a system containing 36,000 atoms. In this paper, we will present the recent parallel performance results of this code, and will apply the method to asymmetric CdSe/CdS core/shell nanorods, which have potential applications in electronic devices and solar cells.

  18. The linearly scaling 3D fragment method for large scale electronic structure calculations

    NASA Astrophysics Data System (ADS)

    Zhao, Zhengji; Meza, Juan; Lee, Byounghak; Shan, Hongzhang; Strohmaier, Erich; Bailey, David; Wang, Lin-Wang

    2009-07-01

    The linearly scaling three-dimensional fragment (LS3DF) method is an O(N) ab initio electronic structure method for large-scale nano material simulations. It is a divide-and-conquer approach with a novel patching scheme that effectively cancels out the artificial boundary effects, which exist in all divide-and-conquer schemes. This method has made ab initio simulations of thousand-atom nanosystems feasible in a couple of hours, while retaining essentially the same accuracy as the direct calculation methods. The LS3DF method won the 2008 ACM Gordon Bell Prize for algorithm innovation. Our code has reached 442 Tflop/s running on 147,456 processors on the Cray XT5 (Jaguar) at OLCF, and has been run on 163,840 processors on the Blue Gene/P (Intrepid) at ALCF, and has been applied to a system containing 36,000 atoms. In this paper, we will present the recent parallel performance results of this code, and will apply the method to asymmetric CdSe/CdS core/shell nanorods, which have potential applications in electronic devices and solar cells.

  19. A new 3-D ray tracing method based on LTI using successive partitioning of cell interfaces and traveltime gradients

    NASA Astrophysics Data System (ADS)

    Zhang, Dong; Zhang, Ting-Ting; Zhang, Xiao-Lei; Yang, Yan; Hu, Ying; Qin, Qian-Qing

    2013-05-01

    We present a new method of three-dimensional (3-D) seismic ray tracing, based on an improvement to the linear traveltime interpolation (LTI) ray tracing algorithm. This new technique involves two separate steps. The first involves a forward calculation based on the LTI method and the dynamic successive partitioning scheme, which is applied to calculate traveltimes on cell boundaries and assumes a wavefront that expands from the source to all grid nodes in the computational domain. We locate several dynamic successive partition points on a cell's surface, the traveltimes of which can be calculated by linear interpolation between the vertices of the cell's boundary. The second is a backward step that uses Fermat's principle and the fact that the ray path is always perpendicular to the wavefront and follows the negative traveltime gradient. In this process, the first-arriving ray path can be traced from the receiver to the source along the negative traveltime gradient, which can be calculated by reconstructing the continuous traveltime field with cubic B-spline interpolation. This new 3-D ray tracing method is compared with the LTI method and the shortest path method (SPM) through a number of numerical experiments. These comparisons show obvious improvements to computed traveltimes and ray paths, both in precision and computational efficiency.

  20. A supervised method for object-based 3D building change detection on aerial stereo images

    NASA Astrophysics Data System (ADS)

    Qin, R.; Gruen, A.

    2014-08-01

    There is a great demand for studying the changes of buildings over time. The current trend for building change detection combines the orthophoto and DSM (Digital Surface Models). The pixel-based change detection methods are very sensitive to the quality of the images and DSMs, while the object-based methods are more robust towards these problems. In this paper, we propose a supervised method for building change detection. After a segment-based SVM (Support Vector Machine) classification with features extracted from the orthophoto and DSM, we focus on the detection of the building changes of different periods by measuring their height and texture differences, as well as their shapes. A decision tree analysis is used to assess the probability of change for each building segment and the traffic lighting system is used to indicate the status "change", "non-change" and "uncertain change" for building segments. The proposed method is applied to scanned aerial photos of the city of Zurich in 2002 and 2007, and the results have demonstrated that our method is able to achieve high detection accuracy.

  1. A method of 3D reconstruction from multiple views based on graph theoretic segmentation

    NASA Astrophysics Data System (ADS)

    Li, Yi; Hong, Hanyu; Zhang, Xiuhua; Bai, Haoyu

    2013-10-01

    During the process of three-dimensional vision inspection for products, the target objects under the complex background are usually immovable. So the desired three-dimensional reconstruction results can not be able to be obtained because of achieving the targets, which is difficult to be extracted from the images under the complicated and diverse background. Aiming at the problem, a method of three-dimensional reconstruction based on the graph theoretic segmentation and multiple views is proposed in this paper. Firstly, the target objects are segmented from obtained multi-view images by the method based on graph theoretic segmentation and the parameters of all cameras arranged in a linear way are gained by the method of Zhengyou Zhang calibration. Then, combined with Harris corner detection and Difference of Gaussian detection algorithm, the feature points of the images are detected. At last, after matching feature points by the triangle method, the surface of the object is reconstructed by the method of Poisson surface reconstruction. The reconstruction experimental results show that the proposed algorithm segments the target objects in the complex scene accurately and steadily. What's more, the algorithm based on the graph theoretic segmentation solves the problem of object extraction in the complex scene, and the static object surface is reconstructed precisely. The proposed algorithm also provides the crucial technology for the three-dimensional vision inspection and other practical applications.

  2. Solution of 3D inverse scattering problems by combined inverse equivalent current and finite element methods

    SciTech Connect

    Kılıç, Emre Eibert, Thomas F.

    2015-05-01

    An approach combining boundary integral and finite element methods is introduced for the solution of three-dimensional inverse electromagnetic medium scattering problems. Based on the equivalence principle, unknown equivalent electric and magnetic surface current densities on a closed surface are utilized to decompose the inverse medium problem into two parts: a linear radiation problem and a nonlinear cavity problem. The first problem is formulated by a boundary integral equation, the computational burden of which is reduced by employing the multilevel fast multipole method (MLFMM). Reconstructed Cauchy data on the surface allows the utilization of the Lorentz reciprocity and the Poynting's theorems. Exploiting these theorems, the noise level and an initial guess are estimated for the cavity problem. Moreover, it is possible to determine whether the material is lossy or not. In the second problem, the estimated surface currents form inhomogeneous boundary conditions of the cavity problem. The cavity problem is formulated by the finite element technique and solved iteratively by the Gauss–Newton method to reconstruct the properties of the object. Regularization for both the first and the second problems is achieved by a Krylov subspace method. The proposed method is tested against both synthetic and experimental data and promising reconstruction results are obtained.

  3. A combined method for correlative 3D imaging of biological samples from macro to nano scale

    PubMed Central

    Kellner, Manuela; Heidrich, Marko; Lorbeer, Raoul-Amadeus; Antonopoulos, Georgios C.; Knudsen, Lars; Wrede, Christoph; Izykowski, Nicole; Grothausmann, Roman; Jonigk, Danny; Ochs, Matthias; Ripken, Tammo; Kühnel, Mark P.; Meyer, Heiko

    2016-01-01

    Correlative analysis requires examination of a specimen from macro to nano scale as well as applicability of analytical methods ranging from morphological to molecular. Accomplishing this with one and the same sample is laborious at best, due to deformation and biodegradation during measurements or intermediary preparation steps. Furthermore, data alignment using differing imaging techniques turns out to be a complex task, which considerably complicates the interconnection of results. We present correlative imaging of the accessory rat lung lobe by combining a modified Scanning Laser Optical Tomography (SLOT) setup with a specially developed sample preparation method (CRISTAL). CRISTAL is a resin-based embedding method that optically clears the specimen while allowing sectioning and preventing degradation. We applied and correlated SLOT with Multi Photon Microscopy, histological and immunofluorescence analysis as well as Transmission Electron Microscopy, all in the same sample. Thus, combining CRISTAL with SLOT enables the correlative utilization of a vast variety of imaging techniques. PMID:27759114

  4. A robust method to detect zero velocity for improved 3D personal navigation using inertial sensors.

    PubMed

    Xu, Zhengyi; Wei, Jianming; Zhang, Bo; Yang, Weijun

    2015-01-01

    This paper proposes a robust zero velocity (ZV) detector algorithm to accurately calculate stationary periods in a gait cycle. The proposed algorithm adopts an effective gait cycle segmentation method and introduces a Bayesian network (BN) model based on the measurements of inertial sensors and kinesiology knowledge to infer the ZV period. During the detected ZV period, an Extended Kalman Filter (EKF) is used to estimate the error states and calibrate the position error. The experiments reveal that the removal rate of ZV false detections by the proposed method increases 80% compared with traditional method at high walking speed. Furthermore, based on the detected ZV, the Personal Inertial Navigation System (PINS) algorithm aided by EKF performs better, especially in the altitude aspect. PMID:25831086

  5. Heat Transfer and Friction-Factor Methods Turbulent Flow Inside Pipes 3d Rough

    1994-01-21

    Three-dimensional roughened internally enhanced tubes have been shown to be one of the most energy efficient for turbulent, forced convection applications. However, there is only one prediction method presented in the open literature and that is restricted to three-dimensional sand-grain roughness. Other roughness types are being proposed: hemispherical sectors, truncated cones, and full and truncated pyramids. There are no validated heat-transfer and friction-factor prediction methods for these different roughness shapes that can be used inmore » the transition and fully rough region. This program calculates the Nusselt number and friction factor values, for a broad range of three-dimensional roughness types such as hemispherical sectors, truncated cones, and full and truncated pyramids. Users of this program are heat-exchangers designers, enhanced tubing suppliers, and research organizations or academia who are developing or validating prediction methods.« less

  6. 3D EPID based dosimetry for pre-treatment verification of VMAT - methods and challenges

    NASA Astrophysics Data System (ADS)

    Greer, P. B.

    2013-06-01

    This article presents an overview of pre-treatment verification of volumetric modulated arc therapy (VMAT) with electronic portal imaging devices (EPIDs). Challenges to VMAT verification with EPIDs are discussed including EPID sag/flex during rotation, acquisition using cine-mode imaging, image artefacts during VMAT and determining the gantry angle for each image. The major methods that have been proposed to verify VMAT with EPIDs are introduced including those using or adapting commercial software systems and non-commercial implementations. Both two-dimensional and three-dimensional methods are reviewed.

  7. Preconditioned upwind methods to solve 3-D incompressible Navier-Stokes equations for viscous flows

    NASA Technical Reports Server (NTRS)

    Hsu, C.-H.; Chen, Y.-M.; Liu, C. H.

    1990-01-01

    A computational method for calculating low-speed viscous flowfields is developed. The method uses the implicit upwind-relaxation finite-difference algorithm with a nonsingular eigensystem to solve the preconditioned, three-dimensional, incompressible Navier-Stokes equations in curvilinear coordinates. The technique of local time stepping is incorporated to accelerate the rate of convergence to a steady-state solution. An extensive study of optimizing the preconditioned system is carried out for two viscous flow problems. Computed results are compared with analytical solutions and experimental data.

  8. Linearly Scaling 3D Fragment Method for Large-Scale Electronic Structure Calculations

    SciTech Connect

    Wang, Lin-Wang; Lee, Byounghak; Shan, Hongzhang; Zhao, Zhengji; Meza, Juan; Strohmaier, Erich; Bailey, David H.

    2008-07-01

    We present a new linearly scaling three-dimensional fragment (LS3DF) method for large scale ab initio electronic structure calculations. LS3DF is based on a divide-and-conquer approach, which incorporates a novel patching scheme that effectively cancels out the artificial boundary effects due to the subdivision of the system. As a consequence, the LS3DF program yields essentially the same results as direct density functional theory (DFT) calculations. The fragments of the LS3DF algorithm can be calculated separately with different groups of processors. This leads to almost perfect parallelization on tens of thousands of processors. After code optimization, we were able to achieve 35.1 Tflop/s, which is 39percent of the theoretical speed on 17,280 Cray XT4 processor cores. Our 13,824-atom ZnTeO alloy calculation runs 400 times faster than a direct DFTcalculation, even presuming that the direct DFT calculation can scale well up to 17,280 processor cores. These results demonstrate the applicability of the LS3DF method to material simulations, the advantage of using linearly scaling algorithms over conventional O(N3) methods, and the potential for petascale computation using the LS3DF method.

  9. FLASHFLOOD: a 3D field-based similarity search and alignment method for flexible molecules.

    PubMed

    Pitman, M C; Huber, W K; Horn, H; Krämer, A; Rice, J E; Swope, W C

    2001-07-01

    A three-dimensional field-based similarity search and alignment method for flexible molecules is introduced. The conformational space of a flexible molecule is represented in terms of fragments and torsional angles of allowed conformations. A user-definable property field is used to compute features of fragment pairs. Features are generalizations of CoMMA descriptors that characterize local regions of the property field by its local moments. The features are invariant under coordinate system transformations. Features taken from a query molecule are used to form alignments with fragment pairs in the database. An assembly algorithm is then used to merge the fragment pairs into full structures, aligned to the query. Key to the method is the use of a context adaptive descriptor scaling procedure as the basis for similarity. This allows the user to tune the weights of the various feature components based on examples relevant to the particular context under investigation. The property fields may range from simple, phenomenological fields, to fields derived from quantum mechanical calculations. We apply the method to the dihydrofolate/methotrexate benchmark system, and show that when one injects relevant contextual information into the descriptor scaling procedure, better results are obtained more efficiently. We also show how the method works and include computer times for a query from a database that represents approximately 23 million conformers of seventeen flexible molecules.

  10. Enhancing Learning Using 3D Printing: An Alternative to Traditional Student Project Methods

    ERIC Educational Resources Information Center

    McGahern, Patricia; Bosch, Frances; Poli, DorothyBelle

    2015-01-01

    Student engagement during the development of a three-dimensional visual aid or teaching model can vary for a number of reasons. Some students report that they are not "creative" or "good at art," often as an excuse to justify less professional outcomes. Student engagement can be low when using traditional methods to produce a…

  11. Efficient solution of 3-D geomechanical problems by indirect BEM using iterative methods

    NASA Astrophysics Data System (ADS)

    Kayupov, M. A.; Bulgakov, V. E.; Kuhn, G.

    1998-12-01

    The research herein primarily addresses to geomechanical problems of underground constructions in Mining and Civil Engineering. The problems are solved using the Indirect Boundary Element Method (IBEM). Although the geometry of the constructions themselves is usually very complicated, it will become much more complicated if we were to draw the existing joints. The computational problem therefore is how to deal with huge amount of equations and find out efficient methods of their formation and solution keeping in mind restraints of the computer memory and calculation time. Several approaches are used to enhance the performance of the Indirect Boundary Element Method. One of them deals with application of efficient equation solvers. It is shown that Krylov-type methods like CGS and GMRES with simple Jacoby preconditioning appear to be efficient and robust. In addition, adaptive integration on the boundary elements, together with diagonal dominance of equationsmake it possible to accelerate convergence of the iterative procedure. Some of the problems discussed allow a substantial reduction of matrix entries that leads to a very cheap iterative solution keeping reasonable accuracy of the results.

  12. Propagation of 3D nonlinear waves over complex bathymetry using a High-Order Spectral method

    NASA Astrophysics Data System (ADS)

    Gouin, Maïté; Ducrozet, Guillaume; Ferrant, Pierre

    2016-04-01

    Scattering of regular and irregular surface gravity waves propagating over a region of arbitrary three-dimensional varying bathymetry is considered here. The three-dimensional High-Order Spectral method (HOS) with an extension to account for a variable bathymetry is used. The efficiency of the model has been proved to be conserved even with this extension. The method is first applied to a bathymetry consisting of an elliptical lens, as used in the Vincent and Briggs (1989) experiment. Incident waves passing across the lens are transformed and a strong convergence region is observed after the elliptical mound. The wave amplification depends on the incident wave. Numerical results for regular and irregular waves are analysed and compared with other methods and experimental data demonstrating the efficiency and practical applicability of the present approach. Then the method is used to model waves propagating over a real bathymetry: the canyons of Scripps/La Jolla in California. The implementation of this complex bathymetry in the model is presented, as well as the first results achieved. They will be compared to the ones obtained with another numerical model.

  13. A FIB-nanotomography method for accurate 3D reconstruction of open nanoporous structures.

    PubMed

    Mangipudi, K R; Radisch, V; Holzer, L; Volkert, C A

    2016-04-01

    We present an automated focused ion beam nanotomography method for nanoporous microstructures with open porosity, and apply it to reconstruct nanoporous gold (np-Au) structures with ligament sizes on the order of a few tens of nanometers. This method uses serial sectioning of a well-defined wedge-shaped geometry to determine the thickness of individual slices from the changes in the sample width in successive cross-sectional images. The pore space of a selected region of the np-Au is infiltrated with ion-beam-deposited Pt composite before serial sectioning. The cross-sectional images are binarized and stacked according to the individual slice thicknesses, and then processed using standard reconstruction methods. For the image conditions and sample geometry used here, we are able to determine the thickness of individual slices with an accuracy much smaller than a pixel. The accuracy of the new method based on actual slice thickness is assessed by comparing it with (i) a reconstruction using the same cross-sectional images but assuming a constant slice thickness, and (ii) a reconstruction using traditional FIB-tomography method employing constant slice thickness. The morphology and topology of the structures are characterized using ligament and pore size distributions, interface shape distribution functions, interface normal distributions, and genus. The results suggest that the morphology and topology of the final reconstructions are significantly influenced when a constant slice thickness is assumed. The study reveals grain-to-grain variations in the morphology and topology of np-Au. PMID:26906523

  14. Evaluation and validation methods for intersubject nonrigid 3D image registration of the human brain

    NASA Astrophysics Data System (ADS)

    Guo, Ting; Starreveld, Yves P.; Peters, Terry M.

    2005-04-01

    This work presents methodologies for assessing the accuracy of non-rigid intersubject registration algorithms from both qualitative and quantitative perspectives. The first method was based on a set of 43 anatomical landmarks. MRI brain images of 12 subjects were non-rigidly registered to the standard MRI dataset. The "gold-standard" coordinates of the 43 landmarks in the target were estimated by averaging their coordinates after 6 tagging sessions. The Euclidean distance between each landmark of a subject after warping to the reference space and the homologous "gold-standard" landmark on the reference image was considered as the registration error. Another method based on visual inspection software displaying the spatial change of colour-coded spheres, before and after warping, was also developed to evaluate the performance of the non-rigid warping algorithms within the homogeneous regions in the deep-brain. Our methods were exemplified by assessing and comparing the accuracy of two intersubject non-rigid registration approaches, AtamaiWarp and ANIMAL algorithms. From the first method, the average registration error was 1.04mm +/- 0.65mm for AtamaiWarp, and 1.59mm +/- 1.47mm for ANIMAL. With maximum registration errors of 2.78mm and 3.90mm respectively, AtamaiWarp and ANIMAL located 58% and 35% landmarks respectively with registration errors less than 1mm. A paired t-test showed that the differences in registration error between AtamaiWarp and ANIMAL were significant (P < 0.002) demonstrating that AtamaiWarp, in addition to being over 60 times faster than ANIMAL, also provides more accurate results. From the second method, both algorithms treated the interior of homogeneous regions in an appropriate manner.

  15. 3-D Seismic Methods for Geothermal Reservoir Exploration and Assessment--Summary

    SciTech Connect

    Majer, E.L.

    2003-07-14

    A wide variety of seismic methods covering the spectrum from DC to kilohertz have been employed at one time or the other in geothermal environments. The reasons have varied from exploration for a heat source to attempting to find individual fractures producing hot fluids. For the purposes here we will assume that overall objective of seismic imaging is for siting wells for successful location of permeable pathways (often fracture permeability) that are controlling flow and transport in naturally fractured reservoirs. The application could be for exploration of new resources or for in-fill/step-out drilling in existing fields. In most geothermal environments the challenge has been to separate the ''background'' natural complexity and heterogeneity of the matrix from the fracture/fault heterogeneity controlling the fluid flow. Ideally one not only wants to find the fractures, but the fractures that are controlling the flow of the fluids. Evaluated in this work is current state-of-the-art surface (seismic reflection) and borehole seismic methods (Vertical Seismic Profiling (VSP), Crosswell and Single Well) to locate and quantify geothermal reservoir characteristics. The focus is on active methods; the assumption being that accuracy is needed for successful well siting. Passive methods are useful for exploration and detailed monitoring for in-fill drilling, but in general the passive methods lack the precision and accuracy for well siting in new or step out areas. In addition, MEQ activity is usually associated with production, after the field has been taken to a mature state, thus in most cases it is assumed that there is not enough MEQ activity in unproduced areas to accurately find the permeable pathways. The premise of this review is that there may new developments in theory and modeling, as well as in data acquisition and processing, which could make it possible to image the subsurface in much more detail than 15 years ago. New understanding of the effect of

  16. Ultrathin optical panel and a method of making an ultrathin optical panel

    DOEpatents

    Biscardi, Cyrus; Brewster, Calvin; DeSanto, Leonard; Veligdan, James T.

    2001-10-09

    An ultrathin optical panel, and a method of producing an ultrathin optical panel, are disclosed, including stacking a plurality of glass sheets, which sheets may be coated with a transparent cladding substance or may be uncoated, fastening together the plurality of stacked coated glass sheets using an epoxy or ultraviolet adhesive, applying uniform pressure to the stack, curing the stack, sawing the stack to form an inlet face on a side of the stack and an outlet face on an opposed side of the stack, bonding a coupler to the inlet face of the stack, and fastening the stack, having the coupler bonded thereto, within a rectangular housing having an open front which is aligned with the outlet face, the rectangular housing having therein a light generator which is optically aligned with the coupler. The light generator is preferably placed parallel to and proximate with the inlet face, thereby allowing for a reduction in the depth of the housing.

  17. Ultrathin Optical Panel And A Method Of Making An Ultrathin Optical Panel.

    DOEpatents

    Biscardi, Cyrus; Brewster, Calvin; DeSanto, Leonard; Veligdan, James T.

    2005-02-15

    An ultrathin optical panel, and a method of producing an ultrathin optical panel, are disclosed, including stacking a plurality of glass sheets, which sheets may be coated with a transparent cladding substance or may be uncoated, fastening together the plurality of stacked coated glass sheets using an epoxy or ultraviolet adhesive, applying uniform pressure to the stack, curing the stack, sawing the stack to form an inlet face on a side of the stack and an outlet face on an opposed side of the stack, bonding a coupler to the inlet face of the stack, and fastening the stack, having the coupler bonded thereto, within a rectangular housing having an open front which is aligned with the outlet face, the rectangular housing having therein a light generator which is optically aligned with the coupler. The light generator is preferably placed parallel to and proximate with the inlet face, thereby allowing for a reduction in the depth of the housing.

  18. Ultrathin optical panel and a method of making an ultrathin optical panel

    DOEpatents

    Biscardi, Cyrus; Brewster, Calvin; DeSanto, Leonard; Veligdan, James T.

    2002-01-01

    An ultrathin optical panel, and a method of producing an ultrathin optical panel, are disclosed, including stacking a plurality of glass sheets, which sheets may be coated With a transparent cladding substance or may be uncoated, fastening together the plurality of stacked coated glass sheets using an epoxy or ultraviolet adhesive, applying uniform pressure to the stack, curing the stack, sawing the stack to form an inlet face on a side of the stack and an outlet face on an opposed side of the stack, bonding a coupler to the inlet face of the stack, and fastening the stack, having the coupler bonded thereto, within a rectangular housing having an open front which is aligned with the outlet face, the rectangular housing having therein a light generator which is optically aligned with the coupler. The light generator is preferably placed parallel to and proximate with the inlet face, thereby allowing for a reduction in the depth of the housing.

  19. Ultrathin optical panel and a method of making an ultrathin optical panel

    DOEpatents

    Biscardi, Cyrus; Brewster, Calvin; DeSanto, Leonard; Veligdan, James T.

    2003-02-11

    An ultrathin optical panel, and a method of producing an ultrathin optical panel, are disclosed, including stacking a plurality of glass sheets, which sheets may be coated with a transparent cladding substance or may be uncoated, fastening together the plurality of stacked coated glass sheets using an epoxy or ultraviolet adhesive, applying uniform pressure to the stack, curing the stack, sawing the stack to form an inlet face on a side of the stack and an outlet face on an opposed side of the stack, bonding a coupler to the inlet face of the stack, and fastening the stack, having the coupler bonded thereto, within a rectangular housing having an open front which is aligned with the outlet face, the rectangular housing having therein a light generator which is optically aligned with the coupler. The light generator is preferably placed parallel to and proximate with the inlet face, thereby allowing for a reduction in the depth of the housing.

  20. Ultrathin Optical Panel And A Method Of Making An Ultrathin Optical Panel.

    DOEpatents

    Biscardi, Cyrus; Brewster, Calvin; DeSanto, Leonard; Veligdan, James T.

    2005-05-17

    An ultrathin optical panel, and a method of producing an ultrathin optical panel, are disclosed, including stacking a plurality of glass sheets, which sheets may be coated with a transparent cladding substance or may be uncoated, fastening together the plurality of stacked coated glass sheets using an epoxy or ultraviolet adhesive, applying uniform pressure to the stack, curing the stack, sawing the stack to form an inlet face on a side of the stack and an outlet face on an opposed side of the stack, bonding a coupler to the inlet face of the stack, and fastening the stack, having the coupler bonded thereto, within a rectangular housing having an open front which is aligned with the outlet face, the rectangular housing having therein a light generator which is optically aligned with the coupler. The light generator is preferably placed parallel to and proximate with the inlet face, thereby allowing for a reduction in the depth of the housing.

  1. Magnetic fields end-face effect investigation of HTS bulk over PMG with 3D-modeling numerical method

    NASA Astrophysics Data System (ADS)

    Qin, Yujie; Lu, Yiyun

    2015-09-01

    In this paper, the magnetic fields end-face effect of high temperature superconducting (HTS) bulk over a permanent magnetic guideway (PMG) is researched with 3D-modeling numerical method. The electromagnetic behavior of the bulk is simulated using finite element method (FEM). The framework is formulated by the magnetic field vector method (H-method). A superconducting levitation system composed of one rectangular HTS bulk and one infinite long PMG is successfully investigated using the proposed method. The simulation results show that for finite geometrical HTS bulk, even the applied magnetic field is only distributed in x-y plane, the magnetic field component Hz which is along the z-axis can be observed interior the HTS bulk.

  2. Solar Cell Panel and the Method for Manufacturing the Same

    NASA Technical Reports Server (NTRS)

    Richards, Benjamin C. (Inventor); Sarver, Charles F. (Inventor); Naidenkova, Maria (Inventor)

    2016-01-01

    According to an aspect of an embodiment of the present disclosure, there is provided a solar cell panel and a method for manufacturing the same. The solar cell panel comprises: a solar cell for generating electric power from sunlight; a coverglass for covering the solar cell; transparent shims, which are disposed between the solar cell and the coverglass at the points where the distance between the solar cell and the coverglass needs to be controlled, and form a space between the solar cell and the coverglass; and adhesive layer, which fills the space between the solar cell and the coverglass and has the thickness the same as that of the transparent shims.

  3. Simulation of 3D tumor cell growth using nonlinear finite element method.

    PubMed

    Dong, Shoubing; Yan, Yannan; Tang, Liqun; Meng, Junping; Jiang, Yi

    2016-01-01

    We propose a novel parallel computing framework for a nonlinear finite element method (FEM)-based cell model and apply it to simulate avascular tumor growth. We derive computation formulas to simplify the simulation and design the basic algorithms. With the increment of the proliferation generations of tumor cells, the FEM elements may become larger and more distorted. Then, we describe a remesh and refinement processing of the distorted or over large finite elements and the parallel implementation based on Message Passing Interface to improve the accuracy and efficiency of the simulation. We demonstrate the feasibility and effectiveness of the FEM model and the parallelization methods in simulations of early tumor growth. PMID:26213205

  4. The parallipiped mesh and mesh change in the 3D TLM method

    NASA Astrophysics Data System (ADS)

    Saguet, P.

    1984-03-01

    The use of parallelipiped and variable-size meshes in the transmission-line-matrix (TLM) numerical-analysis technique for waveguide structures is explained, extending the 2D method of Saguet and Pic (1981) to three dimensions. The theory of the meshes, involving serial and parallel elementary nodes, is explored; the implementation is described; and the resonance frequencies of a rectangular cavity with fin-line structures (similar to that used by Hoefer and Ros, 1979) are computed. The results are presented in a table and compared to the theoretical values. The resonance frequency is obtained with accuracy 5.8 percent in 410 sec of CPU time, as compared with the 240 min needed by Hoefer and Ros to achieve 9.7-percent accuracy with the conventional TLM method.

  5. A new method for automatic discontinuity traces sampling on rock mass 3D model

    NASA Astrophysics Data System (ADS)

    Umili, G.; Ferrero, A.; Einstein, H. H.

    2013-02-01

    A new automatic method for discontinuity traces mapping and sampling on a rock mass digital model is described in this work. The implemented procedure allows one to automatically identify discontinuity traces on a Digital Surface Model: traces are detected directly as surface breaklines, by means of maximum and minimum principal curvature values of the vertices that constitute the model surface. Color influence and user errors, that usually characterize the trace mapping on images, are eliminated. Also trace sampling procedures based on circular windows and circular scanlines have been implemented: they are used to infer trace data and to calculate values of mean trace length, expected discontinuity diameter and intensity of rock discontinuities. The method is tested on a case study: results obtained applying the automatic procedure on the DSM of a rock face are compared to those obtained performing a manual sampling on the orthophotograph of the same rock face.

  6. Assessment of an Unstructured-Grid Method for Predicting 3-D Turbulent Viscous Flows

    NASA Technical Reports Server (NTRS)

    Frink, Neal T.

    1996-01-01

    A method Is presented for solving turbulent flow problems on three-dimensional unstructured grids. Spatial discretization Is accomplished by a cell-centered finite-volume formulation using an accurate lin- ear reconstruction scheme and upwind flux differencing. Time is advanced by an implicit backward- Euler time-stepping scheme. Flow turbulence effects are modeled by the Spalart-Allmaras one-equation model, which is coupled with a wall function to reduce the number of cells in the sublayer region of the boundary layer. A systematic assessment of the method is presented to devise guidelines for more strategic application of the technology to complex problems. The assessment includes the accuracy In predictions of skin-friction coefficient, law-of-the-wall behavior, and surface pressure for a flat-plate turbulent boundary layer, and for the ONERA M6 wing under a high Reynolds number, transonic, separated flow condition.

  7. Assessment of an Unstructured-Grid Method for Predicting 3-D Turbulent Viscous Flows

    NASA Technical Reports Server (NTRS)

    Frink, Neal T.

    1996-01-01

    A method is presented for solving turbulent flow problems on three-dimensional unstructured grids. Spatial discretization is accomplished by a cell-centered finite-volume formulation using an accurate linear reconstruction scheme and upwind flux differencing. Time is advanced by an implicit backward-Euler time-stepping scheme. Flow turbulence effects are modeled by the Spalart-Allmaras one-equation model, which is coupled with a wall function to reduce the number of cells in the sublayer region of the boundary layer. A systematic assessment of the method is presented to devise guidelines for more strategic application of the technology to complex problems. The assessment includes the accuracy in predictions of skin-friction coefficient, law-of-the-wall behavior, and surface pressure for a flat-plate turbulent boundary layer, and for the ONERA M6 wing under a high Reynolds number, transonic, separated flow condition.

  8. Accurate gradient approximation for complex interface problems in 3D by an improved coupling interface method

    SciTech Connect

    Shu, Yu-Chen; Chern, I-Liang; Chang, Chien C.

    2014-10-15

    Most elliptic interface solvers become complicated for complex interface problems at those “exceptional points” where there are not enough neighboring interior points for high order interpolation. Such complication increases especially in three dimensions. Usually, the solvers are thus reduced to low order accuracy. In this paper, we classify these exceptional points and propose two recipes to maintain order of accuracy there, aiming at improving the previous coupling interface method [26]. Yet the idea is also applicable to other interface solvers. The main idea is to have at least first order approximations for second order derivatives at those exceptional points. Recipe 1 is to use the finite difference approximation for the second order derivatives at a nearby interior grid point, whenever this is possible. Recipe 2 is to flip domain signatures and introduce a ghost state so that a second-order method can be applied. This ghost state is a smooth extension of the solution at the exceptional point from the other side of the interface. The original state is recovered by a post-processing using nearby states and jump conditions. The choice of recipes is determined by a classification scheme of the exceptional points. The method renders the solution and its gradient uniformly second-order accurate in the entire computed domain. Numerical examples are provided to illustrate the second order accuracy of the presently proposed method in approximating the gradients of the original states for some complex interfaces which we had tested previous in two and three dimensions, and a real molecule ( (1D63)) which is double-helix shape and composed of hundreds of atoms.

  9. Finite element method for accurate 3D simulation of plasmonic waveguides

    NASA Astrophysics Data System (ADS)

    Burger, Sven; Zschiedrich, Lin; Pomplun, Jan; Schmidt, Frank

    2010-02-01

    Optical properties of hybrid plasmonic waveguides and of low-Q cavities, formed by waveguides of finite length are investigated numerically. These structures are of interest as building-blocks of plasmon lasers. We use a time-harmonic finite-element package including a propagation-mode solver, a resonance-mode solver and a scattering solver for studying various properties of the system. Numerical convergence of all used methods is demonstrated.

  10. Computation of electric and magnetic stimulation in human head using the 3-D impedance method.

    PubMed

    Nadeem, Mohammad; Thorlin, Thorleif; Gandhi, Om P; Persson, Mikael

    2003-07-01

    A comparative, computational study of the modeling of transcranial magnetic stimulation (TMS) and electroconvulsive therapy (ECT) is presented using a human head model. The magnetic fields from a typical TMS coil of figure-eight type is modeled using the Biot-Savart law. The TMS coil is placed in a position used clinically for treatment of depression. Induced current densities and electric field distributions are calculated in the model using the impedance method. The calculations are made using driving currents and wave forms typical in the clinical setting. The obtained results are compared and contrasted with the corresponding ECT results. In the ECT case, a uniform current density is injected on one side of the head and extracted from the equal area on the opposite side of the head. The area of the injected currents corresponds to the electrode placement used in the clinic. The currents and electric fields, thus, produced within the model are computed using the same three-dimensional impedance method as used for the TMS case. The ECT calculations are made using currents and wave forms typical in the clinic. The electrical tissue properties are obtained from a 4-Cole-Cole model. The numerical results obtained are shown on a two-dimenaional cross section of the model. In this study, we find that the current densities and electric fields in the ECT case are stronger and deeper penetrating than the corresponding TMS quantities but both methods show biologically interesting current levels deep inside the brain. PMID:12848358

  11. 3-D vibration analysis of annular sector plates using the Chebyshev-Ritz method

    NASA Astrophysics Data System (ADS)

    Zhou, D.; Lo, S. H.; Cheung, Y. K.

    2009-02-01

    The three-dimensional free vibration of annular sector plates with various boundary conditions is studied by means of the Chebyshev-Ritz method. The analysis is based on the three-dimensional small strain linear elasticity theory. The product of Chebyshev polynomials satisfying the necessary boundary conditions is selected as admissible functions in such a way that the governing eigenvalue equation can be conveniently derived through an optimization process by the Ritz method. The boundary functions guarantee the satisfaction of the geometric boundary conditions of the plates and the Chebyshev polynomials provide the robustness for numerical calculation. The present study provides a full vibration spectrum for the thick annular sector plates, which cannot be given by the two-dimensional (2-D) theories such as the Mindlin theory. Comprehensive numerical results with high accuracy are systematically produced, which can be used as benchmark to evaluate other numerical methods. The effect of radius ratio, thickness ratio and sector angle on natural frequencies of the plates with a sector angle from 120° to 360° is discussed in detail. The three-dimensional vibration solutions for plates with a re-entrant sector angle (larger than 180°) and shallow helicoidal shells (sector angle larger than 360°) with a small helix angle are presented for the first time.

  12. Topology optimization of 3D compliant actuators by a sequential element rejection and admission method

    NASA Astrophysics Data System (ADS)

    Ansola, R.; Veguería, E.; Alonso, C.; Querin, O. M.

    2016-03-01

    This work presents a sequential element rejection and admission (SERA) method for optimum topology design of three dimensional compliant actuators. The proposed procedure has been successfully applied to several topology optimization problems, but most investigations for compliant devices design have been focused on planar systems. This investigation aims to progress on this line, where a generalization of the method for three dimensional topology optimization is explored. The methodology described in this work is useful for the synthesis of high performance flexure based micro and nano manipulation applications demanding for both sensing and control of motion and force trajectories. In this case the goal of the topology optimization problem is to design an actuator that transfers work from the input point to the output port in a structurally efficient way. Here we will use the classical formulation where the displacement performed on a work piece modelled by a spring is maximized. The technique implemented works with two separate criteria for the rejection and admission of elements to efficiently achieve the optimum design and overcomes problems encountered by other evolutionary methods when dealing with compliant mechanisms design. The use of the algorithm is demonstrated through several numerical examples.

  13. A 3-D coupled CFD-DSMC solution method with application to the Mars Sample Return Orbiter

    NASA Astrophysics Data System (ADS)

    Glass, Christopher E.; Gnoffo, Peter A.

    2001-08-01

    A method to obtain coupled CFD-DSMC, 3-D flow field solutions for highly blunt bodies at low incidence is presented and applied to one concept of the Mars Sample Return Orbiter vehicle as a demonstration of the technique. CFD is used to solve the high-density blunt forebody flow defining an inflow boundary condition for a DSMC solution of the afterbody wake flow. By combining the two techniques in flow regions where most applicable, the entire mixed flow field is modeled in an appropriate manner. .

  14. 3-D analysis of permanent magnet linear synchronous motor with magnet arrangement using equivalent magnetic circuit network method

    SciTech Connect

    Jung, I.S.; Hur, J.; Hyun, D.S.

    1999-09-01

    Permanent magnet linear synchronous motors (PMLSM's) are proposed for many applications ranging from ground transportation to servo system and conveyance system. In this paper, the fields and forces of permanent magnet linear synchronous motor (PMLSM) with segmented or skewed magnet arrangement are analyzed according to length of segment or skew. And, the effects according to the lateral overhang of magnet are investigated. For the analysis, 3-dimensional equivalent magnetic circuit network (3-D EMCN) method is used. The analysis results are compared with the experimental ones and shown a reasonable agreement.

  15. 3D numerical modeling of a new thermo-inductive NDT using pulse mode and pulsed phase methods

    NASA Astrophysics Data System (ADS)

    Ramdane, B.; Trichet, D.; Belkadi, M.; Saidi, T.; Fouladgar, J.

    2010-11-01

    Thermo-inductive testing is a new technique used for health inspection on different components of automotive and aeronautic industries. Defect detection is based on the modification of induced eddy current and temperatures due to the presence of defects. The temperature change propagated at the surface of the specimen can then be detected by an infrared camera. In this work, a 3D numerical model of this technique is developed and applied to aeronautic materials. Results obtained are compared with the infrared thermography method to demonstrate the relevance of the new technique.

  16. Voxelization algorithms for geospatial applications: Computational methods for voxelating spatial datasets of 3D city models containing 3D surface, curve and point data models.

    PubMed

    Nourian, Pirouz; Gonçalves, Romulo; Zlatanova, Sisi; Ohori, Ken Arroyo; Vu Vo, Anh

    2016-01-01

    Voxel representations have been used for years in scientific computation and medical imaging. The main focus of our research is to provide easy access to methods for making large-scale voxel models of built environment for environmental modelling studies while ensuring they are spatially correct, meaning they correctly represent topological and semantic relations among objects. In this article, we present algorithms that generate voxels (volumetric pixels) out of point cloud, curve, or surface objects. The algorithms for voxelization of surfaces and curves are a customization of the topological voxelization approach [1]; we additionally provide an extension of this method for voxelization of point clouds. The developed software has the following advantages:•It provides easy management of connectivity levels in the resulting voxels.•It is not dependant on any external library except for primitive types and constructs; therefore, it is easy to integrate them in any application.•One of the algorithms is implemented in C++ and C for platform independence and efficiency.

  17. Voxelization algorithms for geospatial applications: Computational methods for voxelating spatial datasets of 3D city models containing 3D surface, curve and point data models.

    PubMed

    Nourian, Pirouz; Gonçalves, Romulo; Zlatanova, Sisi; Ohori, Ken Arroyo; Vu Vo, Anh

    2016-01-01

    Voxel representations have been used for years in scientific computation and medical imaging. The main focus of our research is to provide easy access to methods for making large-scale voxel models of built environment for environmental modelling studies while ensuring they are spatially correct, meaning they correctly represent topological and semantic relations among objects. In this article, we present algorithms that generate voxels (volumetric pixels) out of point cloud, curve, or surface objects. The algorithms for voxelization of surfaces and curves are a customization of the topological voxelization approach [1]; we additionally provide an extension of this method for voxelization of point clouds. The developed software has the following advantages:•It provides easy management of connectivity levels in the resulting voxels.•It is not dependant on any external library except for primitive types and constructs; therefore, it is easy to integrate them in any application.•One of the algorithms is implemented in C++ and C for platform independence and efficiency. PMID:27408832

  18. [Novel methods for studies of testicular development and spermatogenesis: From 2D to 3D culture].

    PubMed

    Zhang, Lian-dong; Li, He-cheng; Zhang, Tong-dian; Wang, Zi-ming

    2016-03-01

    The two-dimensional model of cell culture is an important method in the study of testicular development and spermatogenesis but can not effectively mimic and regulate the testicular microenvironment and the whole process of spermatogenesis due to the lack of relevant cell factors and the disruption of a three-dimensional spatial structure. In the past 20 years, the development and optimization of the in vitro model such as testis organotypic culture and in vivo model such as testis transplantation achieved a transformation from two- to three-dimension. The maintenance and optimization of the testicular niche structure could mimic the testicular microenvironment and cell types including Leydig, Sertoli and germ cells, which showed similar biological behaviors to those in vivo. Besides, the cell suspension or tissue fragment floats in the gas-liquid interface so that the development of somatic and germ cells is well maintained in vitro whilst the feedback linkage between grafted testis tissue and hypothalamus-pituitary of the host rebuilt in the in vitro model provides an endocrinological basis for spermatogenesis, which serves as an effective methodology to better understand the organogenesis and development of the testis as well as testicular function regulation, advancing the concept of treatment of male infertility. Al- though each of the methods may have its limitations, the progress in the processing, freezing, thawing, and transplantation of cells and tissues will surely promote their clinical application and present their value in translational medicine. PMID:27172668

  19. Combining 3D human in vitro methods for a 3Rs evaluation of novel titanium surfaces in orthopaedic applications

    PubMed Central

    Stevenson, G.; Rehman, S.; Draper, E.; Hernández‐Nava, E.; Hunt, J.

    2016-01-01

    ABSTRACT In this study, we report on a group of complementary human osteoblast in vitro test methods for the preclinical evaluation of 3D porous titanium surfaces. The surfaces were prepared by additive manufacturing (electron beam melting [EBM]) and plasma spraying, allowing the creation of complex lattice surface geometries. Physical properties of the surfaces were characterized by SEM and profilometry and 3D in vitro cell culture using human osteoblasts. Primary human osteoblast cells were found to elicit greater differences between titanium sample surfaces than an MG63 osteoblast‐like cell line, particularly in terms of cell survival. Surface morphology was associated with higher osteoblast metabolic activity and mineralization on rougher titanium plasma spray coated surfaces than smoother surfaces. Differences in osteoblast survival and metabolic activity on titanium lattice structures were also found, despite analogous surface morphology at the cellular level. 3D confocal microscopy identified osteoblast organization within complex titanium surface geometries, adhesion, spreading, and alignment to the biomaterial strut geometries. Mineralized nodule formation throughout the lattice structures was also observed, and indicative of early markers of bone in‐growth on such materials. Testing methods such as those presented are not traditionally considered by medical device manufacturers, but we suggest have value as an increasingly vital tool in efficiently translating pre‐clinical studies, especially in balance with current regulatory practice, commercial demands, the 3Rs, and the relative merits of in vitro and in vivo studies. Biotechnol. Bioeng. 2016;113: 1586–1599. © 2015 The Authors. Biotechnology and Bioengineering Published by Wiley Periodicals, Inc. PMID:26702609

  20. Travel time calculation in regular 3D grid in local and regional scale using fast marching method

    NASA Astrophysics Data System (ADS)

    Polkowski, M.

    2015-12-01

    Local and regional 3D seismic velocity models of crust and sediments are very important for numerous technics like mantle and core tomography, localization of local and regional events and others. Most of those techniques require calculation of wave travel time through the 3D model. This can be achieved using multiple approaches from simple ray tracing to advanced full waveform calculation. In this study simple and efficient implementation of fast marching method is presented. This method provides more information than ray tracing and is much less complicated than methods like full waveform being the perfect compromise. Presented code is written in C++, well commented and is easy to modify for different types of studies. Additionally performance is widely discussed including possibilities of multithreading and massive parallelism like GPU. Source code will be published in 2016 as it is part of the PhD thesis. National Science Centre Poland provided financial support for this work via NCN grant DEC-2011/02/A/ST10/00284.

  1. An eliminating method of motion-induced vertical parallax for time-division 3D display technology

    NASA Astrophysics Data System (ADS)

    Lin, Liyuan; Hou, Chunping

    2015-10-01

    A time difference between the left image and right image of the time-division 3D display makes a person perceive alternating vertical parallax when an object is moving vertically on a fixed depth plane, which causes the left image and right image perceived do not match and makes people more prone to visual fatigue. This mismatch cannot eliminate simply rely on the precise synchronous control of the left image and right image. Based on the principle of time-division 3D display technology and human visual system characteristics, this paper establishes a model of the true vertical motion velocity in reality and vertical motion velocity on the screen, and calculates the amount of the vertical parallax caused by vertical motion, and then puts forward a motion compensation method to eliminate the vertical parallax. Finally, subjective experiments are carried out to analyze how the time difference affects the stereo visual comfort by comparing the comfort values of the stereo image sequences before and after compensating using the eliminating method. The theoretical analysis and experimental results show that the proposed method is reasonable and efficient.

  2. Development of direct-inverse 3-D methods for applied transonic aerodynamic wing design and analysis

    NASA Technical Reports Server (NTRS)

    Carlson, Leland A.

    1989-01-01

    Progress in the direct-inverse wing design method in curvilinear coordinates has been made. This includes the remedying of a spanwise oscillation problem and the assessment of grid skewness, viscous interaction, and the initial airfoil section on the final design. It was found that, in response to the spanwise oscillation problem that designing at every other spanwise station produced the best results for the cases presented, a smoothly varying grid is especially needed for the accurate design at the wing tip, the boundary layer displacement thicknesses must be included in a successful wing design, the design of high and medium aspect ratio wings is possible with this code, and the final airfoil section designed is fairly independent of the initial section.

  3. A method of improving the dynamic response of 3D force/torque sensors

    NASA Astrophysics Data System (ADS)

    Osypiuk, Rafał; Piskorowski, Jacek; Kubus, Daniel

    2016-02-01

    In the paper attention is drawn to adverse dynamic properties of filters implemented in commercial measurement systems, force/torque sensors, which are increasingly used in industrial robotics. To remedy the problem, it has been proposed to employ a time-variant filter with appropriately modulated parameters, owing to which it is possible to suppress the amplitude of the transient response and, at the same time, to increase the pulsation of damped oscillations; this results in the improvement of dynamic properties in terms of reducing the duration of transients. This property plays a key role in force control and in the fundamental problem of the robot establishing contact with rigid environment. The parametric filters have been verified experimentally and compared with filters available for force/torque sensors manufactured by JR3. The obtained results clearly indicate the advantages of the proposed solution, which may be an interesting alternative to the classic methods of filtration.

  4. Characterization Method for 3D Substructure of Nuclear Cell Based on Orthogonal Phase Images

    PubMed Central

    Ji, Ying; Liang, Minjie; Hua, Tingting; Xu, Yuanyuan; Xin, Zhiduo; Wang, Yawei

    2015-01-01

    A set of optical models associated with blood cells are introduced in this paper. All of these models are made up of different parts possessing symmetries. The wrapped phase images as well as the unwrapped ones from two orthogonal directions related to some of these models are obtained by simulation technique. Because the phase mutation occurs on the boundary between nucleus and cytoplasm as well as on the boundary between cytoplasm and environment medium, the equation of inflexion curve is introduced to describe the size, morphology, and substructure of the nuclear cell based on the analysis of the phase features of the model. Furthermore, a mononuclear cell model is discussed as an example to verify this method. The simulation result shows that characterization with inflexion curve based on orthogonal phase images could describe the substructure of the cells availably, which may provide a new way to identify the typical biological cells quickly without scanning. PMID:26355740

  5. Moving-Article X-Ray Imaging System and Method for 3-D Image Generation

    NASA Technical Reports Server (NTRS)

    Fernandez, Kenneth R. (Inventor)

    2012-01-01

    An x-ray imaging system and method for a moving article are provided for an article moved along a linear direction of travel while the article is exposed to non-overlapping x-ray beams. A plurality of parallel linear sensor arrays are disposed in the x-ray beams after they pass through the article. More specifically, a first half of the plurality are disposed in a first of the x-ray beams while a second half of the plurality are disposed in a second of the x-ray beams. Each of the parallel linear sensor arrays is oriented perpendicular to the linear direction of travel. Each of the parallel linear sensor arrays in the first half is matched to a corresponding one of the parallel linear sensor arrays in the second half in terms of an angular position in the first of the x-ray beams and the second of the x-ray beams, respectively.

  6. Implicit Approaches for Moving Boundaries in a 3-D Cartesian Method

    NASA Technical Reports Server (NTRS)

    Murman, Scott M.; Aftosmis, Michael J.; Berger, Marsha J.; Kwak, Dochan

    2003-01-01

    This work considers numerical simulation of three-dimensional flows with time-evolving boundaries. Such problems pose a variety of challenges for numerical schemes, and have received a substantial amount of attention in the recent literature. Since such simulations are unsteady, time-accurate solution of the governing equations is required. In special cases, the body motion can be treated by a uniform rigid motion of the computational domain. For the more general situation of relative-body motion, however, this simplification is unavailable and the simulations require a mechanism for ensuring that the mesh evolves with the moving boundaries. This involves a "remeshing" of the computational domain (either localized or global) at each physical timestep, and places a premium on both the speed and robustness of the remeshing algorithms. This work presents a method which includes unsteady flow simulation, rigid domain motion, and relative body motion using a time-evolving Cartesian grid system in three dimensions.

  7. CVMAC 2D Program: A method of converting 3D to 2D

    SciTech Connect

    Lown, J.

    1990-06-20

    This paper presents the user with a method of converting a three- dimensional wire frame model into a technical illustration, detail, or assembly drawing. By using the 2D Program, entities can be mapped from three-dimensional model space into two-dimensional model space, as if they are being traced. Selected entities to be mapped can include circles, arcs, lines, and points. This program prompts the user to digitize the view to be mapped, specify the layers in which the new two-dimensional entities will reside, and select the entities, either by digitizing or windowing. The new two-dimensional entities are displayed in a small view which the program creates in the lower left corner of the drawing. 9 figs.

  8. Stability and accuracy of 3D neutron transport simulations using the 2D/1D method in MPACT

    DOE PAGES

    Collins, Benjamin; Stimpson, Shane; Kelley, Blake W.; Young, Mitchell T. H.; Kochunas, Brendan; Graham, Aaron; Larsen, Edward W.; Downar, Thomas; Godfrey, Andrew

    2016-08-25

    We derived a consistent “2D/1D” neutron transport method from the 3D Boltzmann transport equation, to calculate fuel-pin-resolved neutron fluxes for realistic full-core Pressurized Water Reactor (PWR) problems. The 2D/1D method employs the Method of Characteristics to discretize the radial variables and a lower order transport solution to discretize the axial variable. Our paper describes the theory of the 2D/1D method and its implementation in the MPACT code, which has become the whole-core deterministic neutron transport solver for the Consortium for Advanced Simulations of Light Water Reactors (CASL) core simulator VERA-CS. We also performed several applications on both leadership-class and industry-classmore » computing clusters. Results are presented for whole-core solutions of the Watts Bar Nuclear Power Station Unit 1 and compared to both continuous-energy Monte Carlo results and plant data.« less

  9. A 3D boundary integral equation method for ultrasonic scattering in a fluid-loaded elastic half space

    NASA Astrophysics Data System (ADS)

    Kimoto, K.; Hirose, S.

    2002-05-01

    This paper presents a boundary integral equation method for 3D ultrasonic scattering problems in a fluid-loaded elastic half space. Since full scale of numerical calculation using finite element or boundary element method is still very expensive, we formulate a boundary integral equation for the scattered field, which is amenable to numerical treatment. In order to solve the problem using the integral equation, however, the wave field without scattering objects, so-called free field need to be given in advance. We calculate the free field by the plane wave spectral method where the asymptotic approximation is introduced for computational efficiency. To show the efficiency of our method, scattering by a spherical cavity near fluid-solid interface is solved and the validity of the results is discussed.

  10. Feasibility of a Multigroup Deterministic Solution Method for 3D Radiotherapy Dose Calculations

    PubMed Central

    Vassiliev, Oleg N.; Wareing, Todd A.; Davis, Ian M.; McGhee, John; Barnett, Douglas; Horton, John L.; Gifford, Kent; Failla, Gregory; Titt, Uwe; Mourtada, Firas

    2008-01-01

    Purpose To investigate the potential of a novel deterministic solver, Attila, for external photon beam radiotherapy dose calculations. Methods and Materials Two hypothetical cases for prostate and head and neck cancer photon beam treatment plans were calculated using Attila and EGSnrc Monte Carlo simulations. Open beams were modeled as isotropic photon point sources collimated to specified field sizes (100 cm SSD). The sources had a realistic energy spectrum calculated by Monte Carlo for a Varian Clinac 2100 operated in a 6MV photon mode. The Attila computational grids consisted of 106,000 elements, or 424,000 spatial degrees of freedom, for the prostate case, and 123,000 tetrahedral elements, or 492,000 spatial degrees of freedom, for the head and neck cases. Results For both cases, results demonstrate excellent agreement between Attila and EGSnrc in all areas, including the build-up regions, near heterogeneities, and at the beam penumbra. Dose agreement for 99% of the voxels was within 3% (relative point-wise difference) or 3mm distance-to-agreement criterion. Localized differences between the Attila and EGSnrc results were observed at bone and soft tissue interfaces, and are attributable to the effect of voxel material homogenization in calculating dose-to-medium in EGSnrc. For both cases, Attila calculation times were under 20 CPU minutes on a single 2.2 GHz AMD Opteron processor. Conclusions The methods in Attila have the potential to be the basis for an efficient dose engine for patient specific treatment planning, providing accuracy similar to that obtained by Monte Carlo. PMID:18722273

  11. Simulating hydroplaning of submarine landslides by quasi 3D depth averaged finite element method

    NASA Astrophysics Data System (ADS)

    De Blasio, Fabio; Battista Crosta, Giovanni

    2014-05-01

    G.B. Crosta, H. J. Chen, and F.V. De Blasio Dept. Of Earth and Environmental Sciences, Università degli Studi di Milano Bicocca, Milano, Italy Klohn Crippen Berger, Calgary, Canada Subaqueous debris flows/submarine landslides, both in the open ocean as well as in fresh waters, exhibit extremely high mobility, quantified by a ratio between vertical to horizontal displacement of the order 0.01 or even much less. It is possible to simulate subaqueous debris flows with small-scale experiments along a flume or a pool using a cohesive mixture of clay and sand. The results have shown a strong enhancement of runout and velocity compared to the case in which the same debris flow travels without water, and have indicated hydroplaning as a possible explanation (Mohrig et al. 1998). Hydroplaning is started when the snout of the debris flow travels sufficiently fast. This generates lift forces on the front of the debris flow exceeding the self-weight of the sediment, which so begins to travel detached from the bed, literally hovering instead of flowing. Clearly, the resistance to flow plummets because drag stress against water is much smaller than the shear strength of the material. The consequence is a dramatic increase of the debris flow speed and runout. Does the process occur also for subaqueous landslides and debris flows in the ocean, something twelve orders of magnitude larger than the experimental ones? Obviously, no experiment will ever be capable to replicate this size, one needs to rely on numerical simulations. Results extending a depth-integrated numerical model for debris flows (Imran et al., 2001) indicate that hydroplaning is possible (De Blasio et al., 2004), but more should be done especially with alternative numerical methodologies. In this work, finite element methods are used to simulate hydroplaning using the code MADflow (Chen, 2014) adopting a depth averaged solution. We ran some simulations on the small scale of the laboratory experiments, and secondly

  12. Efficient computational methods for electromagnetic imaging with applications to 3D magnetotellurics

    NASA Astrophysics Data System (ADS)

    Kordy, Michal Adam

    The motivation for this work is the forward and inverse problem for magnetotellurics, a frequency domain electromagnetic remote-sensing geophysical method used in mineral, geothermal, and groundwater exploration. The dissertation consists of four papers. In the first paper, we prove the existence and uniqueness of a representation of any vector field in H(curl) by a vector lying in H(curl) and H(div). It allows us to represent electric or magnetic fields by another vector field, for which nodal finite element approximation may be used in the case of non-constant electromagnetic properties. With this approach, the system matrix does not become ill-posed for low-frequency. In the second paper, we consider hexahedral finite element approximation of an electric field for the magnetotelluric forward problem. The near-null space of the system matrix for low frequencies makes the numerical solution unstable in the air. We show that the proper solution may obtained by applying a correction on the null space of the curl. It is done by solving a Poisson equation using discrete Helmholtz decomposition. We parallelize the forward code on multicore workstation with large RAM. In the next paper, we use the forward code in the inversion. Regularization of the inversion is done by using the second norm of the logarithm of conductivity. The data space Gauss-Newton approach allows for significant savings in memory and computational time. We show the efficiency of the method by considering a number of synthetic inversions and we apply it to real data collected in Cascade Mountains. The last paper considers a cross-frequency interpolation of the forward response as well as the Jacobian. We consider Pade approximation through model order reduction and rational Krylov subspace. The interpolating frequencies are chosen adaptively in order to minimize the maximum error of interpolation. Two error indicator functions are compared. We prove a theorem of almost always lucky failure in the

  13. Research and Teaching: Methods for Creating and Evaluating 3D Tactile Images to Teach STEM Courses to the Visually Impaired

    ERIC Educational Resources Information Center

    Hasper, Eric; Windhorst, Rogier; Hedgpeth, Terri; Van Tuyl, Leanne; Gonzales, Ashleigh; Martinez, Britta; Yu, Hongyu; Farkas, Zolton; Baluch, Debra P.

    2015-01-01

    Project 3D IMAGINE or 3D Image Arrays to Graphically Implement New Education is a pilot study that researches the effectiveness of incorporating 3D tactile images, which are critical for learning science, technology, engineering, and mathematics, into entry-level lab courses. The focus of this project is to increase the participation and…

  14. An efficient method of 3-D elastic full waveform inversion using a finite-difference injection method for time-lapse imaging

    NASA Astrophysics Data System (ADS)

    Borisov, Dmitry; Singh, Satish C.; Fuji, Nobuaki

    2015-09-01

    Seismic full waveform inversion is an objective method to estimate elastic properties of the subsurface and is an important area of research, particularly in seismic exploration community. It is a data-fitting approach, where the difference between observed and synthetic data is minimized iteratively. Due to a very high computational cost, the practical implementation of waveform inversion has so far been restricted to a 2-D geometry with different levels of physics incorporated in it (e.g. elasticity/viscoelasticity) or to a 3-D geometry but using an acoustic approximation. However, the earth is three-dimensional, elastic and heterogeneous and therefore a full 3-D elastic inversion is required in order to obtain more accurate and valuable models of the subsurface. Despite the recent increase in computing power, the application of 3-D elastic full waveform inversion to real-scale problems remains quite challenging on the current computer architecture. Here, we present an efficient method to perform 3-D elastic full waveform inversion for time-lapse seismic data using a finite-difference injection method. In this method, the wavefield is computed in the whole model and is stored on a surface above a finite volume where the model is perturbed and localized inversion is performed. Comparison of the final results using the 3-D finite-difference injection method and conventional 3-D inversion performed within the whole volume shows that our new method provides significant reductions in computational time and memory requirements without any notable loss in accuracy. Our approach shows a big potential for efficient reservoir monitoring in real time-lapse experiments.

  15. A new method to acquire 3-D images of a dental cast

    NASA Astrophysics Data System (ADS)

    Li, Zhongke; Yi, Yaxing; Zhu, Zhen; Li, Hua; Qin, Yongyuan

    2006-01-01

    This paper introduced our newly developed method to acquire three-dimensional images of a dental cast. A rotatable table, a laser-knife, a mirror, a CCD camera and a personal computer made up of a three-dimensional data acquiring system. A dental cast is placed on the table; the mirror is installed beside the table; a linear laser is projected to the dental cast; the CCD camera is put up above the dental cast, it can take picture of the dental cast and the shadow in the mirror; while the table rotating, the camera records the shape of the laser streak projected on the dental cast, and transmit the data to the computer. After the table rotated one circuit, the computer processes the data, calculates the three-dimensional coordinates of the dental cast's surface. In data processing procedure, artificial neural networks are enrolled to calibrate the lens distortion, map coordinates form screen coordinate system to world coordinate system. According to the three-dimensional coordinates, the computer reconstructs the stereo image of the dental cast. It is essential for computer-aided diagnosis and treatment planning in orthodontics. In comparison with other systems in service, for example, laser beam three-dimensional scanning system, the characteristic of this three-dimensional data acquiring system: a. celerity, it casts only 1 minute to scan a dental cast; b. compact, the machinery is simple and compact; c. no blind zone, a mirror is introduced ably to reduce blind zone.

  16. 3D anisotropic semiconductor grooves measurement simulations (scatterometry) using FDTD methods

    NASA Astrophysics Data System (ADS)

    Shirasaki, Hirokimi

    2007-03-01

    In this paper, we analyze the finite-difference time-domain (FDTD) method for the anisotropic medium mounts that are put on the silicon substrate periodically. FDTD is useful for analyzing the light scattering from arbitrary shape anisotropic grooves and mounts. We consider anisotropic conductive films which have a uniaxial anisotropy, a biaxial anisotropy and off-diagonal dielectric constants tensor components. First, the FDTD formulation is obtained from Maxwell equation for the anisotropic medium. Next, we show light propagation aspects and reflection coefficients in the structure of anisotropic flat layer put on the silicon substrate. The electric field polarized in the y direction is perpendicularly emitted to the x-y plane. In this case, only the Ey scattered components appear in the isotropic medium, the uniaxial anisotropy and the biaxial anisotropy. However, we show that the Ex components also slightly appear in the off-diagonal anisotropic case, since there are off-diagonal dielectric components. The reflection coefficients are compared with the RCWA results calculated by approximating that the refractive indices are isotropy. Then, we confirmed that the anisotropy calculation is right. Finally, we calculated the reflection coefficients from the anisotropic periodic mounts put on the silicon substrate.

  17. LBM-EP: Lattice-Boltzmann method for fast cardiac electrophysiology simulation from 3D images.

    PubMed

    Rapaka, S; Mansi, T; Georgescu, B; Pop, M; Wright, G A; Kamen, A; Comaniciu, Dorin

    2012-01-01

    Current treatments of heart rhythm troubles require careful planning and guidance for optimal outcomes. Computational models of cardiac electrophysiology are being proposed for therapy planning but current approaches are either too simplified or too computationally intensive for patient-specific simulations in clinical practice. This paper presents a novel approach, LBM-EP, to solve any type of mono-domain cardiac electrophysiology models at near real-time that is especially tailored for patient-specific simulations. The domain is discretized on a Cartesian grid with a level-set representation of patient's heart geometry, previously estimated from images automatically. The cell model is calculated node-wise, while the transmembrane potential is diffused using Lattice-Boltzmann method within the domain defined by the level-set. Experiments on synthetic cases, on a data set from CESC'10 and on one patient with myocardium scar showed that LBM-EP provides results comparable to an FEM implementation, while being 10 - 45 times faster. Fast, accurate, scalable and requiring no specific meshing, LBM-EP paves the way to efficient and detailed models of cardiac electrophysiology for therapy planning. PMID:23286029

  18. High Resolution Ultrasonic Method for 3D Fingerprint Recognizable Characteristics in Biometrics Identification

    NASA Astrophysics Data System (ADS)

    Maev, R. Gr.; Bakulin, E. Yu.; Maeva, A.; Severin, F.

    Biometrics is a rapidly evolving scientific and applied discipline that studies possible ways of personal identification by means of unique biological characteristics. Such identification is important in various situations requiring restricted access to certain areas, information and personal data and for cases of medical emergencies. A number of automated biometric techniques have been developed, including fingerprint, hand shape, eye and facial recognition, thermographic imaging, etc. All these techniques differ in the recognizable parameters, usability, accuracy and cost. Among these, fingerprint recognition stands alone since a very large database of fingerprints has already been acquired. Also, fingerprints are key evidence left at a crime scene and can be used to indentify suspects. Therefore, of all automated biometric techniques, especially in the field of law enforcement, fingerprint identification seems to be the most promising. We introduce a newer development of the ultrasonic fingerprint imaging. The proposed method obtains a scan only once and then varies the C-scan gate position and width to visualize acoustic reflections from any appropriate depth inside the skin. Also, B-scans and A-scans can be recreated from any position using such data array, which gives the control over the visualization options. By setting the C-scan gate deeper inside the skin, distribution of the sweat pores (which are located along the ridges) can be easily visualized. This distribution should be unique for each individual so this provides a means of personal identification, which is not affected by any changes (accidental or intentional) of the fingers' surface conditions. This paper discusses different setups, acoustic parameters of the system, signal and image processing options and possible ways of 3-dimentional visualization that could be used as a recognizable characteristic in biometric identification.

  19. A Simulation of crustal deformation around sourthwest Japan using 3D Finite Element Method

    NASA Astrophysics Data System (ADS)

    Oma, T.; Ito, T.; Sasajima, R.

    2015-12-01

    In southwest Japan, the Philippine Sea plate is subducting beneath the Amurian plate at the Nankai Trough. Megathrust earthquakes have been occurred with recurrence intervals of about 100-150 years. Previous studies have estimated co-seismic slip distribution at the 1944 Tokankai and the 1946 Nankai earthquakes and interplate plate coupling along the Nankai Trough. Many of previous studies employed a homogeneous elastic half space or elastic and viscoelastic layers structure. However, these assumptions as mentioned above are inadequate, since inhomogeneous structure is exceled in the real earth result from subducting plate. Therefore, in order to estimate the effect of inhomogeneous structure on the crustal deformation, we calculate crustal deformation due to Megathrust earthquake using 3-dimensional Finite Element Method (FEM). We use FEM software PyLith v2.1. In this study, we construct a finite element mesh with the region of 3000km(SW) × 2300km(NS) × 400km(depth) cover Japanese Islands, using Cubit 13.0. This mesh is considered topography, the Philippine Sea plate, the Pacific plate, Moho discontinuity, and curvature of the earth. In order to examine differences of surface displacement between inhomogeneous and homogeneous structures, we use co-seismic slip distribution of the 1944 and 1946 earthquakes estimated by Sagiya and Thatcher (1999). In result, surface elastic response under inhomogeneous structure becomes 30% larger than it's homogeneous structure at the Muroto cape. This difference indicates that co-seismic slip or plate coupling distribution estimated from Green's function under an assumption of homogeneous structure is overestimated. Then, we calculate viscoelastic response assuming Maxwell rheology model and viscosity as 1×1019. As a result, predicted horizontal velocity of viscoelastic response due to the events corresponds to 10 % of observed present deformation. It suggest that spatial pattern of plate coupling might be change when we

  20. Method for visualization and presentation of priceless old prints based on precise 3D scan

    NASA Astrophysics Data System (ADS)

    Bunsch, Eryk; Sitnik, Robert

    2014-02-01

    Graphic prints and manuscripts constitute main part of the cultural heritage objects created by the most of the known civilizations. Their presentation was always a problem due to their high sensitivity to light and changes of external conditions (temperature, humidity). Today it is possible to use an advanced digitalization techniques for documentation and visualization of mentioned objects. In the situation when presentation of the original heritage object is impossible, there is a need to develop a method allowing documentation and then presentation to the audience of all the aesthetical features of the object. During the course of the project scans of several pages of one of the most valuable books in collection of Museum of Warsaw Archdiocese were performed. The book known as "Great Dürer Trilogy" consists of three series of woodcuts by the Albrecht Dürer. The measurement system used consists of a custom designed, structured light-based, high-resolution measurement head with automated digitization system mounted on the industrial robot. This device was custom built to meet conservators' requirements, especially the lack of ultraviolet or infrared radiation emission in the direction of measured object. Documentation of one page from the book requires about 380 directional measurements which constitute about 3 billion sample points. The distance between the points in the cloud is 20 μm. Provided that the measurement with MSD (measurement sampling density) of 2500 points makes it possible to show to the publicity the spatial structure of this graphics print. An important aspect is the complexity of the software environment created for data processing, in which massive data sets can be automatically processed and visualized. Very important advantage of the software which is using directly clouds of points is the possibility to manipulate freely virtual light source.

  1. Interactive editing of 3D geological structures and tectonic history sketching via a rigid element method

    NASA Astrophysics Data System (ADS)

    Laurent, Gautier; Caumon, Guillaume; Jessell, Mark

    2015-01-01

    Numerical models of geological structures are generally built with a geometrical approach, which lacks an explicit representation of the deformation history and may lead to incompatible structures. We advocate that the deformation history should be investigated and represented from the very first steps of the modelling process, provided that a series of rapid, interactive or automated, deformation tools are available for local editing, forward modelling and restoration. In this paper, we define the specifications of such tools and emphasise the need for rapidity and robustness. We briefly review the different applications of deformation tools in geomodelling and the existing deformation algorithms. We select a deformation algorithm based on rigid elements, first presented in the Computer Graphics community, which we refer to as Reed. It is able to rapidly deform any kind of geometrical object, including points, lines or volumes, with an approximated mechanical behaviour. The objects to be deformed are embedded in rigid cells whose displacement is optimised by minimising a global cost function with respect to displacement boundary conditions. This cost function measures the difference in displacement between neighbouring elements. The embedded objects are then deformed based on their original position with respect to the rigid elements. We present the basis of our implementation of this algorithm and highlight its ability to fulfil the specifications we defined. Its application to geomodelling specific problems is illustrated through the construction of a synthetic structural model of multiply deformed layers with a forward modelling approach. A special boundary condition adapted to restore large folds is also presented and applied to the large anticline of Han-sur-Lesse, Belgium, which demonstrates the ability of this method to efficiently perform a volumetric restoration without global projections.

  2. On the Quality of Velocity Interpolation Schemes for Marker-In-Cell Methods on 3-D Staggered Grids

    NASA Astrophysics Data System (ADS)

    Kaus, B.; Pusok, A. E.; Popov, A.

    2015-12-01

    The marker-in-cell method is generally considered to be a flexible and robust method to model advection of heterogenous non-diffusive properties (i.e. rock type or composition) in geodynamic problems or incompressible Stokes problems. In this method, Lagrangian points carrying compositional information are advected with the ambient velocity field on an immobile, Eulerian grid. However, velocity interpolation from grid points to marker locations is often performed without preserving the zero divergence of the velocity field at the interpolated locations (i.e. non-conservative). Such interpolation schemes can induce non-physical clustering of markers when strong velocity gradients are present (Jenny et al., 2001) and this may, eventually, result in empty grid cells, a serious numerical violation of the marker-in-cell method. Solutions to this problem include: using larger mesh resolutions and/or marker densities, or repeatedly controlling the marker distribution (i.e. inject/delete), but which does not have an established physical background. To remedy this at low computational costs, Jenny et al. (2001) and Meyer and Jenny (2004) proposed a simple, conservative velocity interpolation (CVI) scheme for 2-D staggered grid, while Wang et al. (2015) extended the formulation to 3-D finite element methods. Here, we follow up with these studies and report on the quality of velocity interpolation methods for 2-D and 3-D staggered grids. We adapt the formulations from both Jenny et al. (2001) and Wang et al. (2015) for use on 3-D staggered grids, where the velocity components have different node locations as compared to finite element, where they share the same node location. We test the different interpolation schemes (CVI and non-CVI) in combination with different advection schemes (Euler, RK2 and RK4) and with/out marker control on Stokes problems with strong velocity gradients, which are discretized using a finite difference method. We show that a conservative formulation

  3. Accurate and efficient Nyström volume integral equation method for the Maxwell equations for multiple 3-D scatterers

    NASA Astrophysics Data System (ADS)

    Chen, Duan; Cai, Wei; Zinser, Brian; Cho, Min Hyung

    2016-09-01

    In this paper, we develop an accurate and efficient Nyström volume integral equation (VIE) method for the Maxwell equations for a large number of 3-D scatterers. The Cauchy Principal Values that arise from the VIE are computed accurately using a finite size exclusion volume together with explicit correction integrals consisting of removable singularities. Also, the hyper-singular integrals are computed using interpolated quadrature formulae with tensor-product quadrature nodes for cubes, spheres and cylinders, that are frequently encountered in the design of meta-materials. The resulting Nyström VIE method is shown to have high accuracy with a small number of collocation points and demonstrates p-convergence for computing the electromagnetic scattering of these objects. Numerical calculations of multiple scatterers of cubic, spherical, and cylindrical shapes validate the efficiency and accuracy of the proposed method.

  4. Modeling Three-Phase Compositional Flow on Complex 3D Unstructured Grids with Higher-Order Finite Element Methods

    NASA Astrophysics Data System (ADS)

    Moortgat, J.; Firoozabadi, A.

    2013-12-01

    Most problems of interest in hydrogeology and subsurface energy resources involve complex heterogeneous geological formations. Such domains are most naturally represented in numerical reservoir simulations by unstructured computational grids. Finite element methods are a natural choice to describe fluid flow on unstructured meshes, because the governing equations can be readily discretized for any grid-element geometry. In this work, we consider the challenging problem of fully compositional three-phase flow in 3D unstructured grids, discretized by tetrahedra, prisms, or hexahedra, and compare to simulations on 3D structured grids. We employ a combination of mixed hybrid finite element methods to solve for the pressure and flux fields in a fractional flow formulation, and higher-order discontinuous Galerkin methods for the mass transport equations. These methods are well suited to simulate flow in heterogeneous and fractured reservoirs, because they provide a globally continuous pressure and flux field, while allowing for sharp discontinuities in the phase properties, such as compositions and saturations. The increased accuracy from using higher-order methods improves the modeling of highly non-linear flow, such as gravitational and viscous fingering. We present several numerical examples to study convergence rates and the (lack of) sensitivity to gridding/mesh orientation, and mesh quality. These examples consider gravity depletion, water and gas injection in oil saturated subsurface reservoirs with species exchange between up to three fluid phases. The examples demonstrate the wide applicability of our chosen finite element methods in the study of challenging multiphase flow problems in porous, geometrically complex, subsurface media.

  5. 3-D Seismic Interpretation

    NASA Astrophysics Data System (ADS)

    Moore, Gregory F.

    2009-05-01

    This volume is a brief introduction aimed at those who wish to gain a basic and relatively quick understanding of the interpretation of three-dimensional (3-D) seismic reflection data. The book is well written, clearly illustrated, and easy to follow. Enough elementary mathematics are presented for a basic understanding of seismic methods, but more complex mathematical derivations are avoided. References are listed for readers interested in more advanced explanations. After a brief introduction, the book logically begins with a succinct chapter on modern 3-D seismic data acquisition and processing. Standard 3-D acquisition methods are presented, and an appendix expands on more recent acquisition techniques, such as multiple-azimuth and wide-azimuth acquisition. Although this chapter covers the basics of standard time processing quite well, there is only a single sentence about prestack depth imaging, and anisotropic processing is not mentioned at all, even though both techniques are now becoming standard.

  6. Fast and accurate global multiphase arrival tracking: the irregular shortest-path method in a 3-D spherical earth model

    NASA Astrophysics Data System (ADS)

    Huang, Guo-Jiao; Bai, Chao-Ying; Greenhalgh, Stewart

    2013-09-01

    The traditional grid/cell-based wavefront expansion algorithms, such as the shortest path algorithm, can only find the first arrivals or multiply reflected (or mode converted) waves transmitted from subsurface interfaces, but cannot calculate the other later reflections/conversions having a minimax time path. In order to overcome the above limitations, we introduce the concept of a stationary minimax time path of Fermat's Principle into the multistage irregular shortest path method. Here we extend it from Cartesian coordinates for a flat earth model to global ray tracing of multiple phases in a 3-D complex spherical earth model. The ray tracing results for 49 different kinds of crustal, mantle and core phases show that the maximum absolute traveltime error is less than 0.12 s and the average absolute traveltime error is within 0.09 s when compared with the AK135 theoretical traveltime tables for a 1-D reference model. Numerical tests in terms of computational accuracy and CPU time consumption indicate that the new scheme is an accurate, efficient and a practical way to perform 3-D multiphase arrival tracking in regional or global traveltime tomography.

  7. Efficient and robust 3D CT image reconstruction based on total generalized variation regularization using the alternating direction method.

    PubMed

    Chen, Jianlin; Wang, Linyuan; Yan, Bin; Zhang, Hanming; Cheng, Genyang

    2015-01-01

    Iterative reconstruction algorithms for computed tomography (CT) through total variation regularization based on piecewise constant assumption can produce accurate, robust, and stable results. Nonetheless, this approach is often subject to staircase artefacts and the loss of fine details. To overcome these shortcomings, we introduce a family of novel image regularization penalties called total generalized variation (TGV) for the effective production of high-quality images from incomplete or noisy projection data for 3D reconstruction. We propose a new, fast alternating direction minimization algorithm to solve CT image reconstruction problems through TGV regularization. Based on the theory of sparse-view image reconstruction and the framework of augmented Lagrange function method, the TGV regularization term has been introduced in the computed tomography and is transformed into three independent variables of the optimization problem by introducing auxiliary variables. This new algorithm applies a local linearization and proximity technique to make the FFT-based calculation of the analytical solutions in the frequency domain feasible, thereby significantly reducing the complexity of the algorithm. Experiments with various 3D datasets corresponding to incomplete projection data demonstrate the advantage of our proposed algorithm in terms of preserving fine details and overcoming the staircase effect. The computation cost also suggests that the proposed algorithm is applicable to and is effective for CBCT imaging. Theoretical and technical optimization should be investigated carefully in terms of both computation efficiency and high resolution of this algorithm in application-oriented research.

  8. Sexual dimorphism in frontal bone roundness quantified by a novel 3D-based and landmark-free method.

    PubMed

    Bulut, Ozgur; Petaros, Anja; Hizliol, İsmail; Wärmländer, Sebastian K T S; Hekimoglu, Baki

    2016-04-01

    In this study we present a novel and landmark-free method for quantifying shape differences between male and female frontal bones. CT scans were recorded for 80 male and 80 female Turkish hospital patients, age 25-40. The frontal bones were first isolated from the 3D models by digital cutting along the bordering sutures, and then aligned to a CAD-based sphere. This allowed us to quantify the amount of frontal bone overlapping with the sphere (on average 43.2 ± 6.5% for males and 33.9 ± 6.6% for females, the difference is significant at p<0.0001), and to identify areas of shape difference and deviation from the sphere surface in male and female bones. The larger proportion of spherical frontal bone surface in males challenges the common description of the female forehead as "rounder". Based on the overlap data, we developed discriminant functions able to correctly classify 77.5% of the frontal bone models as male/female. This demonstrates that 3D-based and landmark-free approaches to statistical shape analysis may become a viable alternative to the currently dominating landmark-based approaches for shape investigation. PMID:26921984

  9. Waveform inversion for 3-D earth structure using the Direct Solution Method implemented on vector-parallel supercomputer

    NASA Astrophysics Data System (ADS)

    Hara, Tatsuhiko

    2004-08-01

    We implement the Direct Solution Method (DSM) on a vector-parallel supercomputer and show that it is possible to significantly improve its computational efficiency through parallel computing. We apply the parallel DSM calculation to waveform inversion of long period (250-500 s) surface wave data for three-dimensional (3-D) S-wave velocity structure in the upper and uppermost lower mantle. We use a spherical harmonic expansion to represent lateral variation with the maximum angular degree 16. We find significant low velocities under south Pacific hot spots in the transition zone. This is consistent with other seismological studies conducted in the Superplume project, which suggests deep roots of these hot spots. We also perform simultaneous waveform inversion for 3-D S-wave velocity and Q structure. Since resolution for Q is not good, we develop a new technique in which power spectra are used as data for inversion. We find good correlation between long wavelength patterns of Vs and Q in the transition zone such as high Vs and high Q under the western Pacific.

  10. Biologically relevant 3D tumor arrays: imaging-based methods for quantification of reproducible growth and analysis of treatment response

    NASA Astrophysics Data System (ADS)

    Celli, Jonathan P.; Rizvi, Imran; Blanden, Adam R.; Abu-Yousif, Adnan O.; Spring, Bryan Q.; Hasan, Tayyaba

    2011-02-01

    Three-dimensional in vitro tumor models have emerged as powerful research tools in cancer biology, though the vast potential of these systems as high-throughput, biologically relevant reporters of treatment response has yet to be adequately explored. Here, building on previous studies, we demonstrate the utility of using 3D models for ovarian and pancreatic cancers in conjunction with quantitative image processing to reveal aspects of growth behavior and treatment response that would not be evident without either modeling or quantitative analysis component. In this report we specifically focus on recent improvements in the imaging component of this integrative research platform and emphasize analysis to establish reproducible growth properties in 3D tumor arrays, a key consideration in establishing the utility of this platform as a reliable reporter of therapeutic response. Building on previous studies using automated segmentation of low magnification image fields containing large numbers of nodules to study size dependent treatment effects, we introduce an improvement to this method using multiresolution decomposition to remove gradient background from transmitted light images for more reliable feature identification. This approach facilitates the development of a new treatment response metric, disruption fraction (Dfrac), which quantifies dose dependent distribution shifts from nodular fragmentation induced by cytotoxic therapies. Using this approach we show that PDT treatment is associated with significant dose-dependent increases in Dfrac, while this is not observed with carboplatin treatment. The ability to quantify this response to therapy could play a key role in design of combination regimens involving these two modalities.

  11. Determination of ancient volcanic eruption center based on gravity methods (3D) in Gunungkidul area Yogyakarta, Indonesia

    NASA Astrophysics Data System (ADS)

    Santoso, Agus; Sismanto, Setiawan, Ary; Pramumijoyo, Subagyo

    2016-05-01

    Ancient eruption centers can be determined by detecting the position of the ancient volcanic material, it is important to understand the elements of ancient volcanic material by studying the area geologically and prove the existence of an ancient volcanic eruption centers using geophysics gravity method. The measuring instrument is Lacoste & Romberg gravimeter type 1115, the number of data are 900 points. The area 60×40 kilometers, the modeling 3D software is reaching depth of 15 km at the south of the island of Java subduction zone. It is suported by geological data in the field that are found as the following: 1. Pyroclastic Fall which is a product of volcanic eruptions, and lapilli tuff with felsic mineral. 2. Pyroclastic flow with Breccia, tuffaceous sandstone and tuff breccia. 3. Hot springs near Parangwedang Parangtritis. 4. Igneous rock with scoria structure in Parang Kusumo, structured amigdaloida which is the result of the eruption of lava/volcanic eruptions, and Pillow lava in the shows the flowing lava into the sea. Base on gravity anomaly shows that there are strong correlationship between those geological data to the gravity anomaly. The gravblox modeling (3D) shows the position of ancient of volcanic eruption in this area clearly.

  12. Calibration of a 3D endoscopic system based on active stereo method for shape measurement of biological tissues and specimen.

    PubMed

    Furukawa, Ryo; Aoyama, Masahito; Hiura, Shinsaku; Aoki, Hirooki; Kominami, Yoko; Sanomura, Yoji; Yoshida, Shigeto; Tanaka, Shinji; Sagawa, Ryusuke; Kawasaki, Hiroshi

    2014-01-01

    For endoscopic medical treatment, measuring the size and shape of the lesion, such as a tumor, is important for the improvement of diagnostic accuracy. We are developing a system to measure the shapes and sizes of living tissue by active stereo method using a normal endoscope on which a micro pattern projector is attached. In order to perform 3D reconstruction, estimating the intrinsic and extrinsic parameters of the endoscopic camera and the pattern projector is required. Particularly, calibration of the pattern projector is difficult. In this paper, we propose a simultaneous estimation method of both intrinsic and extrinsic parameters of the pattern projector. This simplifies the calibration procedure required in practical scenes. Furthermore, we have developed an efficient user interface to intuitively operate the calibration and reconstruction procedures. Using the developed system, we measured the shape of an internal tissue of the soft palate of a human and a biological specimen.

  13. A low order flow/acoustics interaction method for the prediction of sound propagation using 3D adaptive hybrid grids

    SciTech Connect

    Kallinderis, Yannis; Vitsas, Panagiotis A.; Menounou, Penelope

    2012-07-15

    A low-order flow/acoustics interaction method for the prediction of sound propagation and diffraction in unsteady subsonic compressible flow using adaptive 3-D hybrid grids is investigated. The total field is decomposed into the flow field described by the Euler equations, and the acoustics part described by the Nonlinear Perturbation Equations. The method is shown capable of predicting monopole sound propagation, while employment of acoustics-guided adapted grid refinement improves the accuracy of capturing the acoustic field. Interaction of sound with solid boundaries is also examined in terms of reflection, and diffraction. Sound propagation through an unsteady flow field is examined using static and dynamic flow/acoustics coupling demonstrating the importance of the latter.

  14. A new 3D method for measuring cranio-facial relationships with cone beam computed tomography (CBCT)

    PubMed Central

    Cibrián, Rosa; Gandia, Jose L.; Paredes, Vanessa

    2013-01-01

    Objectives: CBCT systems, with their high precision 3D reconstructions, 1:1 images and accuracy in locating cephalometric landmarks, allows us to evaluate measurements from craniofacial structures, so enabling us to replace the anthropometric methods or bidimensional methods used until now. The aims are to analyse cranio-facial relationships in a sample of patients who had previously undergone a CBCT and create a new 3D cephalometric method for assessing and measuring patients. Study Design: 90 patients who had a CBCT (i-Cat®) as a diagnostic register were selected. 12 cephalometric landmarks on the three spatial planes (X,Y,Z) were defined and 21 linear measurements were established. Using these measurements, 7 triangles were described and analysed. With the sides of the triangles: (CdR-Me-CdL); (FzR-Me-FzL); (GoR-N-GoL); and the Gl-Me distance, the ratios between them were analysed. In addition, 4 triangles in the mandible were measured (body: GoR-DB-Me and GoL-DB-Me and ramus: KrR-CdR-GoR and KrL-CdL-GoL). Results: When analyzing the sides of the CdR-Me-CdL triangle, it was found that the 69.33% of the patients could be considered symmetric. Regarding the ratios between the sides of the following triangles: CdR-Me-CdL, FzR-Me-FzL, GoR-N-GoL and the Gl-Me distance, it was found that almost all ratios were close to 1:1 except between the CdR-CdL side with respect the rest of the sides. With regard to the ratios of the 4 triangles of the mandible, it was found that the most symmetrical relationships were those corresponding to the sides of the body of the mandible and the most asymmetrical ones were those corresponding to the base of such triangles. Conclusions: A new method for assessing cranio-facial relationshps using CBCT has been established. It could be used for diverse purposes including diagnosis and treatment planning. Key words:Craniofacial relationship, CBCT, 3D cephalometry. PMID:23524427

  15. Implicit finite volume and discontinuous Galerkin methods for multicomponent flow in unstructured 3D fractured porous media

    NASA Astrophysics Data System (ADS)

    Moortgat, Joachim; Amooie, Mohammad Amin; Soltanian, Mohamad Reza

    2016-10-01

    We present a new implicit higher-order finite element (FE) approach to efficiently model compressible multicomponent fluid flow on unstructured grids and in fractured porous subsurface formations. The scheme is sequential implicit: pressures and fluxes are updated with an implicit Mixed Hybrid Finite Element (MHFE) method, and the transport of each species is approximated with an implicit second-order Discontinuous Galerkin (DG) FE method. Discrete fractures are incorporated with a cross-flow equilibrium approach. This is the first investigation of all-implicit higher-order MHFE-DG for unstructured triangular, quadrilateral (2D), and hexahedral (3D) grids and discrete fractures. A lowest-order implicit finite volume (FV) transport update is also developed for the same grid types. The implicit methods are compared to an Implicit-Pressure-Explicit-Composition (IMPEC) scheme. For fractured domains, the unconditionally stable implicit transport update is shown to increase computational efficiency by orders of magnitude as compared to IMPEC, which has a time-step constraint proportional to the pore volume of discrete fracture grid cells. However, when lowest-order Euler time-discretizations are used, numerical errors increase linearly with the larger implicit time-steps, resulting in high numerical dispersion. Second-order Crank-Nicolson implicit MHFE-DG and MHFE-FV are therefore presented as well. Convergence analyses show twice the convergence rate for the DG methods as compared to FV, resulting in two to three orders of magnitude higher computational efficiency. Numerical experiments demonstrate the efficiency and robustness in modeling compressible multicomponent flow on irregular and fractured 2D and 3D grids, even in the presence of fingering instabilities.

  16. Applications of Non-destructive methods (GPR and 3D Laser Scanner) in Historic Masonry Arch Bridge Assessment

    NASA Astrophysics Data System (ADS)

    Alani, Amir; Banks, Kevin

    2014-05-01

    There exist approximately 70,000 masonry arch bridge spans (brick and stone) in the UK with tens of thousands more throughout Europe. A significant number of these bridges are still in operation and form part of the road and rail network systems in many countries. A great majority of these bridges are in desperate need of repair and maintenance. Applications of non-destructive testing methods such as ground penetrating radar (GPR