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Sample records for 3d particle-in-cell code

  1. Spacecraft charging analysis with the implicit particle-in-cell code iPic3D

    SciTech Connect

    Deca, J.; Lapenta, G.; Marchand, R.; Markidis, S.

    2013-10-15

    We present the first results on the analysis of spacecraft charging with the implicit particle-in-cell code iPic3D, designed for running on massively parallel supercomputers. The numerical algorithm is presented, highlighting the implementation of the electrostatic solver and the immersed boundary algorithm; the latter which creates the possibility to handle complex spacecraft geometries. As a first step in the verification process, a comparison is made between the floating potential obtained with iPic3D and with Orbital Motion Limited theory for a spherical particle in a uniform stationary plasma. Second, the numerical model is verified for a CubeSat benchmark by comparing simulation results with those of PTetra for space environment conditions with increasing levels of complexity. In particular, we consider spacecraft charging from plasma particle collection, photoelectron and secondary electron emission. The influence of a background magnetic field on the floating potential profile near the spacecraft is also considered. Although the numerical approaches in iPic3D and PTetra are rather different, good agreement is found between the two models, raising the level of confidence in both codes to predict and evaluate the complex plasma environment around spacecraft.

  2. Implementation of a 3D version of ponderomotive guiding center solver in particle-in-cell code OSIRIS

    NASA Astrophysics Data System (ADS)

    Helm, Anton; Vieira, Jorge; Silva, Luis; Fonseca, Ricardo

    2016-10-01

    Laser-driven accelerators gained an increased attention over the past decades. Typical modeling techniques for laser wakefield acceleration (LWFA) are based on particle-in-cell (PIC) simulations. PIC simulations, however, are very computationally expensive due to the disparity of the relevant scales ranging from the laser wavelength, in the micrometer range, to the acceleration length, currently beyond the ten centimeter range. To minimize the gap between these despair scales the ponderomotive guiding center (PGC) algorithm is a promising approach. By describing the evolution of the laser pulse envelope separately, only the scales larger than the plasma wavelength are required to be resolved in the PGC algorithm, leading to speedups in several orders of magnitude. Previous work was limited to two dimensions. Here we present the implementation of the 3D version of a PGC solver into the massively parallel, fully relativistic PIC code OSIRIS. We extended the solver to include periodic boundary conditions and parallelization in all spatial dimensions. We present benchmarks for distributed and shared memory parallelization. We also discuss the stability of the PGC solver.

  3. Development of the 3D Parallel Particle-In-Cell Code IMPACT to Simulate the Ion Beam Transport System of VENUS (Abstract)

    SciTech Connect

    Qiang, J.; Leitner, D.; Todd, D.S.; Ryne, R.D.

    2005-03-15

    The superconducting ECR ion source VENUS serves as the prototype injector ion source for the Rare Isotope Accelerator (RIA) driver linac. The RIA driver linac requires a great variety of high charge state ion beams with up to an order of magnitude higher intensity than currently achievable with conventional ECR ion sources. In order to design the beam line optics of the low energy beam line for the RIA front end for the wide parameter range required for the RIA driver accelerator, reliable simulations of the ion beam extraction from the ECR ion source through the ion mass analyzing system are essential. The RIA low energy beam transport line must be able to transport intense beams (up to 10 mA) of light and heavy ions at 30 keV.For this purpose, LBNL is developing the parallel 3D particle-in-cell code IMPACT to simulate the ion beam transport from the ECR extraction aperture through the analyzing section of the low energy transport system. IMPACT, a parallel, particle-in-cell code, is currently used to model the superconducting RF linac section of RIA and is being modified in order to simulate DC beams from the ECR ion source extraction. By using the high performance of parallel supercomputing we will be able to account consistently for the changing space charge in the extraction region and the analyzing section. A progress report and early results in the modeling of the VENUS source will be presented.

  4. Development of the 3D Parallel Particle-In-Cell Code IMPACT to Simulate the Ion Beam Transport System of VENUS (Abstract)

    NASA Astrophysics Data System (ADS)

    Qiang, J.; Leitner, D.; Todd, D. S.; Ryne, R. D.

    2005-03-01

    The superconducting ECR ion source VENUS serves as the prototype injector ion source for the Rare Isotope Accelerator (RIA) driver linac. The RIA driver linac requires a great variety of high charge state ion beams with up to an order of magnitude higher intensity than currently achievable with conventional ECR ion sources. In order to design the beam line optics of the low energy beam line for the RIA front end for the wide parameter range required for the RIA driver accelerator, reliable simulations of the ion beam extraction from the ECR ion source through the ion mass analyzing system are essential. The RIA low energy beam transport line must be able to transport intense beams (up to 10 mA) of light and heavy ions at 30 keV. For this purpose, LBNL is developing the parallel 3D particle-in-cell code IMPACT to simulate the ion beam transport from the ECR extraction aperture through the analyzing section of the low energy transport system. IMPACT, a parallel, particle-in-cell code, is currently used to model the superconducting RF linac section of RIA and is being modified in order to simulate DC beams from the ECR ion source extraction. By using the high performance of parallel supercomputing we will be able to account consistently for the changing space charge in the extraction region and the analyzing section. A progress report and early results in the modeling of the VENUS source will be presented.

  5. Parallel 3D Finite Element Particle-in-Cell Simulations with Pic3P

    SciTech Connect

    Candel, A.; Kabel, A.; Lee, L.; Li, Z.; Ng, C.; Schussman, G.; Ko, K.; Ben-Zvi, I.; Kewisch, J.; /Brookhaven

    2009-06-19

    SLAC's Advanced Computations Department (ACD) has developed the parallel 3D Finite Element electromagnetic Particle-In-Cell code Pic3P. Designed for simulations of beam-cavity interactions dominated by space charge effects, Pic3P solves the complete set of Maxwell-Lorentz equations self-consistently and includes space-charge, retardation and boundary effects from first principles. Higher-order Finite Element methods with adaptive refinement on conformal unstructured meshes lead to highly efficient use of computational resources. Massively parallel processing with dynamic load balancing enables large-scale modeling of photoinjectors with unprecedented accuracy, aiding the design and operation of next-generation accelerator facilities. Applications include the LCLS RF gun and the BNL polarized SRF gun.

  6. Electromagnetic 2D/3D Particle-in-Cell simulations of the solar wind interaction with lunar crustal anomalies.

    NASA Astrophysics Data System (ADS)

    Deca, Jan; Lapenta, Giovanni; Lembège, Bertrand; Divin, Andrey; Markidis, Stefano; Amaya, Jorge

    2013-04-01

    We present the first 2D/3D fully kinetic Particle-in-Cell simulations of the solar wind interaction with lunar crustal magnetic anomalies. The simulations are performed using the implicit electromagnetic Particle-in-Cell code iPIC3D [Markidis, Lapenta & Rizwan-uddin, 2010]. Multiscale physics is resolved for all plasma components (heavy ions, protons and electrons) in the code, recently updated with a set of open boundary conditions designed for solar wind-body interactions. We use a dipole to model the crustal anomaly. The dipole center is located outside the computational domain and the boundary representing the lunar surface is modeled as a particle-absorbing plane. Photo-emission from the lunar surface is at this point not included, but will be in future work. We study the behaviour of the dipole model with variable surface magnetic field strength under changing solar wind conditions and confirm that lunar crustal magnetic fields may indeed be strong enough to stand off the solar wind and form a mini-magnetosphere, as suggested by MHD simulations [Harnett & Winglee, 2000, 2002, 2003] and spacecraft observations [Kurata et al., 2005; Halekas et al., 2008; Wieser et al., 2010]. 3D-PIC simulations reveal to be very helpful to analyze the diversion/braking of the particle flux and the characteristics of the resulting particles accumulation. The particle flux to the surface is significantly reduced at the magnetic anomaly, surrounded by a region of enhanced density due to the magnetic mirror effect. Finally we will present preliminary results on the interaction of the solar wind with weaker magnetic anomalies in which highly non-adiabatic interactions are expected.

  7. Cross-Platform Graphical User Interface with fast 3-D Rendering for Particle-in-Cell Simulations

    NASA Astrophysics Data System (ADS)

    Bruhwiler, David; Luetkemeyer, Kelly; Cary, John

    1999-11-01

    The Graphical User Interface (GUI) for XOOPIC (X11-based Object-Oriented Particle-in-Cell) is being ported to Qt, a cross-platform C++ windowing toolkit, thus permitting the code to run on PC's running both Windows 95/98/NT and Linux, as well as all commercial Unix platforms. All 3-D graphics will be handled through OpenGL, the cross-platform standard for fast 3-D rendering. The use of object-oriented design (OOD) techniques keeps the GUI/physics interface clean, and minimizes the impact of GUI development on the physics code. OOD also improves the maintainability and extensibility of large scientific simulation codes, while allowing for cross-platform portability and ready interchange of individual algorithms or entire physics kernels. Planned new GUI features include interactive modifications of the simulation parameters, including generation of a slowly-varying mesh and automatic updating of a corresponding input file. Improved modeling of high-power microwave tubes is one of the primary applications being targeted by this project.

  8. Second order gyrokinetic theory for particle-in-cell codes

    NASA Astrophysics Data System (ADS)

    Tronko, Natalia; Bottino, Alberto; Sonnendrücker, Eric

    2016-08-01

    The main idea of the gyrokinetic dynamical reduction consists in a systematical removal of the fast scale motion (the gyromotion) from the dynamics of the plasma, resulting in a considerable simplification and a significant gain of computational time. The gyrokinetic Maxwell-Vlasov equations are nowadays implemented in for modeling (both laboratory and astrophysical) strongly magnetized plasmas. Different versions of the reduced set of equations exist, depending on the construction of the gyrokinetic reduction procedure and the approximations performed in the derivation. The purpose of this article is to explicitly show the connection between the general second order gyrokinetic Maxwell-Vlasov system issued from the modern gyrokinetic theory and the model currently implemented in the global electromagnetic Particle-in-Cell code ORB5. Necessary information about the modern gyrokinetic formalism is given together with the consistent derivation of the gyrokinetic Maxwell-Vlasov equations from first principles. The variational formulation of the dynamics is used to obtain the corresponding energy conservation law, which in turn is used for the verification of energy conservation diagnostics currently implemented in ORB5. This work fits within the context of the code verification project VeriGyro currently run at IPP Max-Planck Institut in collaboration with others European institutions.

  9. Acceleration of a Particle-in-Cell Code for Space Plasma Simulations with OpenACC

    NASA Astrophysics Data System (ADS)

    Peng, Ivy Bo; Markidis, Stefano; Vaivads, Andris; Vencels, Juris; Deca, Jan; Lapenta, Giovanni; Hart, Alistair; Laure, Erwin

    2015-04-01

    We simulate space plasmas with the Particle-in-cell (PIC) method that uses computational particles to mimic electrons and protons in solar wind and in Earth magnetosphere. The magnetic and electric fields are computed by solving the Maxwell's equations on a computational grid. In each PIC simulation step, there are four major phases: interpolation of fields to particles, updating the location and velocity of each particle, interpolation of particles to grids and solving the Maxwell's equations on the grid. We use the iPIC3D code, which was implemented in C++, using both MPI and OpenMP, for our case study. By November 2014, heterogeneous systems using hardware accelerators such as Graphics Processing Unit (GPUs) and the Many Integrated Core (MIC) coprocessors for high performance computing continue growth in the top 500 most powerful supercomputers world wide. Scientific applications for numerical simulations need to adapt to using accelerators to achieve portability and scalability in the coming exascale systems. In our work, we conduct a case study of using OpenACC to offload the computation intensive parts: particle mover and interpolation of particles to grids, in a massively parallel Particle-in-Cell simulation code, iPIC3D, to multi-GPU systems. We use MPI for inter-node communication for halo exchange and communicating particles. We identify the most promising parts suitable for GPUs accelerator by profiling using CrayPAT. We implemented manual deep copy to address the challenges of porting C++ classes to GPU. We document the necessary changes in the exiting algorithms to adapt for GPU computation. We present the challenges and findings as well as our methodology for porting a Particle-in-Cell code to multi-GPU systems using OpenACC. In this work, we will present the challenges, findings and our methodology of porting a Particle-in-Cell code for space applications as follows: We profile the iPIC3D code by Cray Performance Analysis Tool (CrayPAT) and identify

  10. Advanced 3D electromagnetic and particle-in-cell modeling on structured/unstructured hybrid grids

    SciTech Connect

    Seidel, D.B.; Pasik, M.F.; Kiefer, M.L.; Riley, D.J.; Turner, C.D.

    1998-01-01

    New techniques have been recently developed that allow unstructured, free meshes to be embedded into standard 3-dimensional, rectilinear, finite-difference time-domain grids. The resulting hybrid-grid modeling capability allows the higher resolution and fidelity of modeling afforded by free meshes to be combined with the simplicity and efficiency of rectilinear techniques. Integration of these new methods into the full-featured, general-purpose QUICKSILVER electromagnetic, Particle-In-Cell (PIC) code provides new modeling capability for a wide variety of electromagnetic and plasma physics problems. To completely exploit the integration of this technology into QUICKSILVER for applications requiring the self-consistent treatment of charged particles, this project has extended existing PIC methods for operation on these hybrid unstructured/rectilinear meshes. Several technical issues had to be addressed in order to accomplish this goal, including the location of particles on the unstructured mesh, adequate conservation of charge, and the proper handling of particles in the transition region between structured and unstructured portions of the hybrid grid.

  11. Load-balancing techniques for a parallel electromagnetic particle-in-cell code

    SciTech Connect

    PLIMPTON,STEVEN J.; SEIDEL,DAVID B.; PASIK,MICHAEL F.; COATS,REBECCA S.

    2000-01-01

    QUICKSILVER is a 3-d electromagnetic particle-in-cell simulation code developed and used at Sandia to model relativistic charged particle transport. It models the time-response of electromagnetic fields and low-density-plasmas in a self-consistent manner: the fields push the plasma particles and the plasma current modifies the fields. Through an LDRD project a new parallel version of QUICKSILVER was created to enable large-scale plasma simulations to be run on massively-parallel distributed-memory supercomputers with thousands of processors, such as the Intel Tflops and DEC CPlant machines at Sandia. The new parallel code implements nearly all the features of the original serial QUICKSILVER and can be run on any platform which supports the message-passing interface (MPI) standard as well as on single-processor workstations. This report describes basic strategies useful for parallelizing and load-balancing particle-in-cell codes, outlines the parallel algorithms used in this implementation, and provides a summary of the modifications made to QUICKSILVER. It also highlights a series of benchmark simulations which have been run with the new code that illustrate its performance and parallel efficiency. These calculations have up to a billion grid cells and particles and were run on thousands of processors. This report also serves as a user manual for people wishing to run parallel QUICKSILVER.

  12. Investigation of Parametric Excitation of Whistler Waves Using 3D Particle-In-Cell Simulations

    NASA Astrophysics Data System (ADS)

    Caplinger, James; Sotnikov, Vladimir; Main, Daniel; Rose, David; Paraschiv, Ioana

    2016-10-01

    Previous theoretical work has shown that a parametric interaction between quasi-electrostatic lower oblique resonance (LOR) and lower frequency (ω < ωLH) ion acoustic or extremely low frequency (ELF) waves can produce electromagnetic whistler waves in a cold magnetized plasma. It was also demonstrated theoretically that this interaction can more efficiently generate electromagnetic whistler waves than by direct excitation by a conventional loop antenna, operating at a single frequency. For the purpose of numerically validating the above result, a series of particle-in-cell simulations were carried out. We first demonstrate the ability to accurately model whistler wave excitation producing the familiar resonant surfaces which comprise the LOR using a modeled loop antenna. Next we demonstrate the ability to generate ion acoustic waves as well as ELF waves, both of which are shown to agree with the expected linear dispersion relations. Finally, we investigate the existence of any nonlinear interaction which indicates the desired parametric excitation and attempt to analyze the efficiency of this method of excitation and radiated power going into the whistler part of the VLF wave spectrum.

  13. BOA, Beam Optics Analyzer A Particle-In-Cell Code

    SciTech Connect

    Thuc Bui

    2007-12-06

    The program was tasked with implementing time dependent analysis of charges particles into an existing finite element code with adaptive meshing, called Beam Optics Analyzer (BOA). BOA was initially funded by a DOE Phase II program to use the finite element method with adaptive meshing to track particles in unstructured meshes. It uses modern programming techniques, state-of-the-art data structures, so that new methods, features and capabilities are easily added and maintained. This Phase II program was funded to implement plasma simulations in BOA and extend its capabilities to model thermal electrons, secondary emissions, self magnetic field and implement a more comprehensive post-processing and feature-rich GUI. The program was successful in implementing thermal electrons, secondary emissions, and self magnetic field calculations. The BOA GUI was also upgraded significantly, and CCR is receiving interest from the microwave tube and semiconductor equipment industry for the code. Implementation of PIC analysis was partially successful. Computational resource requirements for modeling more than 2000 particles begin to exceed the capability of most readily available computers. Modern plasma analysis typically requires modeling of approximately 2 million particles or more. The problem is that tracking many particles in an unstructured mesh that is adapting becomes inefficient. In particular memory requirements become excessive. This probably makes particle tracking in unstructured meshes currently unfeasible with commonly available computer resources. Consequently, Calabazas Creek Research, Inc. is exploring hybrid codes where the electromagnetic fields are solved on the unstructured, adaptive mesh while particles are tracked on a fixed mesh. Efficient interpolation routines should be able to transfer information between nodes of the two meshes. If successfully developed, this could provide high accuracy and reasonable computational efficiency.

  14. The Plasma Simulation Code: A modern particle-in-cell code with patch-based load-balancing

    NASA Astrophysics Data System (ADS)

    Germaschewski, Kai; Fox, William; Abbott, Stephen; Ahmadi, Narges; Maynard, Kristofor; Wang, Liang; Ruhl, Hartmut; Bhattacharjee, Amitava

    2016-08-01

    This work describes the Plasma Simulation Code (PSC), an explicit, electromagnetic particle-in-cell code with support for different order particle shape functions. We review the basic components of the particle-in-cell method as well as the computational architecture of the PSC code that allows support for modular algorithms and data structure in the code. We then describe and analyze in detail a distinguishing feature of PSC: patch-based load balancing using space-filling curves which is shown to lead to major efficiency gains over unbalanced methods and a previously used simpler balancing method.

  15. TACO3D. 3-D Finite Element Heat Transfer Code

    SciTech Connect

    Mason, W.E.

    1992-03-04

    TACO3D is a three-dimensional, finite-element program for heat transfer analysis. An extension of the two-dimensional TACO program, it can perform linear and nonlinear analyses and can be used to solve either transient or steady-state problems. The program accepts time-dependent or temperature-dependent material properties, and materials may be isotropic or orthotropic. A variety of time-dependent and temperature-dependent boundary conditions and loadings are available including temperature, flux, convection, and radiation boundary conditions and internal heat generation. Additional specialized features treat enclosure radiation, bulk nodes, and master/slave internal surface conditions (e.g., contact resistance). Data input via a free-field format is provided. A user subprogram feature allows for any type of functional representation of any independent variable. A profile (bandwidth) minimization option is available. The code is limited to implicit time integration for transient solutions. TACO3D has no general mesh generation capability. Rows of evenly-spaced nodes and rows of sequential elements may be generated, but the program relies on separate mesh generators for complex zoning. TACO3D does not have the ability to calculate view factors internally. Graphical representation of data in the form of time history and spatial plots is provided through links to the POSTACO and GRAPE postprocessor codes.

  16. 3D Electromagnetic Particle-in-Cell simulations of the solar wind interaction with lunar magnetic anomalies

    NASA Astrophysics Data System (ADS)

    Deca, J.; Lapenta, G.; Divin, A. V.; Lembege, B.; Markidis, S.

    2013-12-01

    Unlike the Earth and Mercury, our Moon has no global magnetic field and is therefore not shielded from the impinging solar wind by a magnetosphere. However, lunar magnetic field measurements made by the Apollo missions provided direct evidence that the Moon has regions of small-scale crustal magnetic fields, ranging up to a few 100km in scale size with surface magnetic field strengths up to hundreds of nanoTeslas. More recently, the Lunar Prospector spacecraft has provided high-resolution observations allowing to construct magnetic field maps of the entire Moon, confirming the earlier results from Apollo, but also showing that the lunar plasma environment is much richer than earlier believed. Typically the small-scale magnetic fields are non-dipolar and rather tiny compared to the lunar radius and mainly clustered on the far side of the moon. Using iPic3D we present the first 3D fully kinetic and electromagnetic Particle-in-Cell simulations of the solar wind interaction with lunar magnetic anomalies. We study the behaviour of a dipole model with variable surface magnetic field strength under changing solar wind conditions and confirm that lunar crustal magnetic fields may indeed be strong enough to stand off the solar wind and form a mini-magnetosphere, as suggested by MHD and hybrid simulations and spacecraft observations. 3D-PIC simulations reveal to be very helpful to analyze the diversion/braking of the particle flux and the characteristics of the resulting particles accumulation. The particle flux to the surface is significantly reduced at the magnetic anomaly, surrounded by a region of enhanced density due to the magnetic mirror effect. Second, the ability of iPic3D to resolve all plasma components (heavy ions, protons and electrons) allows to discuss in detail the electron physics leading to the highly non-adiabatic interactions expected as well as the implications for solar wind shielding of the lunar surface, depending on the scale size (solar wind protons

  17. First experience with particle-in-cell plasma physics code on ARM-based HPC systems

    NASA Astrophysics Data System (ADS)

    Sáez, Xavier; Soba, Alejandro; Sánchez, Edilberto; Mantsinen, Mervi; Mateo, Sergi; Cela, José M.; Castejón, Francisco

    2015-09-01

    In this work, we will explore the feasibility of porting a Particle-in-cell code (EUTERPE) to an ARM multi-core platform from the Mont-Blanc project. The used prototype is based on a system-on-chip Samsung Exynos 5 with an integrated GPU. It is the first prototype that could be used for High-Performance Computing (HPC), since it supports double precision and parallel programming languages.

  18. Leap frog integrator modifications in highly collisional particle-in-cell codes

    NASA Astrophysics Data System (ADS)

    Hanzlikova, N.; Turner, M. M.

    2014-07-01

    Leap frog integration method is a standard, simple, fast, and accurate way to implement velocity and position integration in particle-in-cell codes. Due to the direct solution of kinetics of particles in phase space central to the particle-in-cell procedure, important information can be obtained on particle velocity distributions, and consequently on transport and heating processes. This approach is commonly associated with physical situations where collisional effects are weak, but can also be profitably applied in some highly collisional cases, such as occur in semiconductor devices and gaseous discharges at atmospheric pressure. In this paper, we show that the implementation of the leap frog integration method in these circumstances can violate some of the assumptions central to the accuracy of this scheme. Indeed, without adaptation, the method gives incorrect results. We show here how the method must be modified to deal correctly with highly collisional cases.

  19. Validation and Verification of Two Particle-In-Cells Codes for a Glow Discharge

    NASA Astrophysics Data System (ADS)

    Carlsson, Johan; Khrabrov, Alexander V.; Kaganovich, Igor D.; Sommerer, Timothy

    2016-10-01

    The two particle-in-cell codes EDIPIC and LSP were benchmarked and validated for a parallel-plate glow discharge in helium, in which the axial electric field had been carefully measured. Both particle-in-cell codes reproduce very well cathode fall and negative glow regions of the discharge, including formation of high density plasma with very low-energy electrons in negative glow. A detailed code comparison was performed for several synthetic cases of electron-beam injection into helium gas and showed that the codes are in excellent agreement for ionization rate, as well as for elastic and excitation collisions with isotropic scattering pattern. However, electron velocity distribution is anisotropic in the cathode fall, and therefore, a more accurate model of anisotropic scattering in elastic and ionization cross sections needs to be taken into account. In the process of validation several issues with both codes were fixed, including necessity to use modern random generators in both codes, and choose efficient numerical model from EDIPIC for secondary electron emission and circuit model in LSP. This Research was supported by US Department of Energy.

  20. Parallel CARLOS-3D code development

    SciTech Connect

    Putnam, J.M.; Kotulski, J.D.

    1996-02-01

    CARLOS-3D is a three-dimensional scattering code which was developed under the sponsorship of the Electromagnetic Code Consortium, and is currently used by over 80 aerospace companies and government agencies. The code has been extensively validated and runs on both serial workstations and parallel super computers such as the Intel Paragon. CARLOS-3D is a three-dimensional surface integral equation scattering code based on a Galerkin method of moments formulation employing Rao- Wilton-Glisson roof-top basis for triangular faceted surfaces. Fully arbitrary 3D geometries composed of multiple conducting and homogeneous bulk dielectric materials can be modeled. This presentation describes some of the extensions to the CARLOS-3D code, and how the operator structure of the code facilitated these improvements. Body of revolution (BOR) and two-dimensional geometries were incorporated by simply including new input routines, and the appropriate Galerkin matrix operator routines. Some additional modifications were required in the combined field integral equation matrix generation routine due to the symmetric nature of the BOR and 2D operators. Quadrilateral patched surfaces with linear roof-top basis functions were also implemented in the same manner. Quadrilateral facets and triangular facets can be used in combination to more efficiently model geometries with both large smooth surfaces and surfaces with fine detail such as gaps and cracks. Since the parallel implementation in CARLOS-3D is at high level, these changes were independent of the computer platform being used. This approach minimizes code maintenance, while providing capabilities with little additional effort. Results are presented showing the performance and accuracy of the code for some large scattering problems. Comparisons between triangular faceted and quadrilateral faceted geometry representations will be shown for some complex scatterers.

  1. Development of a relativistic Particle In Cell code PARTDYN for linear accelerator beam transport

    NASA Astrophysics Data System (ADS)

    Phadte, D.; Patidar, C. B.; Pal, M. K.

    2017-04-01

    A relativistic Particle In Cell (PIC) code PARTDYN is developed for the beam dynamics simulation of z-continuous and bunched beams. The code is implemented in MATLAB using its MEX functionality which allows both ease of development as well higher performance similar to a compiled language like C. The beam dynamics calculations carried out by the code are compared with analytical results and with other well developed codes like PARMELA and BEAMPATH. The effect of finite number of simulation particles on the emittance growth of intense beams has been studied. Corrections to the RF cavity field expressions were incorporated in the code so that the fields could be calculated correctly. The deviations of the beam dynamics results between PARTDYN and BEAMPATH for a cavity driven in zero-mode have been discussed. The beam dynamics studies of the Low Energy Beam Transport (LEBT) using PARTDYN have been presented.

  2. photon-plasma: A modern high-order particle-in-cell code

    SciTech Connect

    Haugbølle, Troels; Frederiksen, Jacob Trier; Nordlund, Åke

    2013-06-15

    We present the photon-plasma code, a modern high order charge conserving particle-in-cell code for simulating relativistic plasmas. The code is using a high order implicit field solver and a novel high order charge conserving interpolation scheme for particle-to-cell interpolation and charge deposition. It includes powerful diagnostics tools with on-the-fly particle tracking, synthetic spectra integration, 2D volume slicing, and a new method to correctly account for radiative cooling in the simulations. A robust technique for imposing (time-dependent) particle and field fluxes on the boundaries is also presented. Using a hybrid OpenMP and MPI approach, the code scales efficiently from 8 to more than 250.000 cores with almost linear weak scaling on a range of architectures. The code is tested with the classical benchmarks particle heating, cold beam instability, and two-stream instability. We also present particle-in-cell simulations of the Kelvin-Helmholtz instability, and new results on radiative collisionless shocks.

  3. New Particle-in-Cell Code for Numerical Simulation of Coherent Synchrotron Radiation

    SciTech Connect

    Balsa Terzic, Rui Li

    2010-05-01

    We present a first look at the new code for self-consistent, 2D simulations of beam dynamics affected by the coherent synchrotron radiation. The code is of the particle-in-cell variety: the beam bunch is sampled by point-charge particles, which are deposited on the grid; the corresponding forces on the grid are then computed using retarded potentials according to causality, and interpolated so as to advance the particles in time. The retarded potentials are evaluated by integrating over the 2D path history of the bunch, with the charge and current density at the retarded time obtained from interpolation of the particle distributions recorded at discrete timesteps. The code is benchmarked against analytical results obtained for a rigid-line bunch. We also outline the features and applications which are currently being developed.

  4. Half-Cell RF Gun Simulations with the Electromagnetic Particle-in-Cell Code VORPAL

    SciTech Connect

    Paul, K.; Dimitrov, D. A.; Busby, R.; Bruhwiler, D. L.; Smithe, D.; Cary, J. R.; Kewisch, J.; Kayran, D.; Calaga, R.; Ben-Zvi, I.

    2009-01-22

    We have simulated Brookhaven National Laboratory's half-cell superconducting RF gun design for a proposed high-current ERL using the three-dimensional, electromagnetic particle-in-cell code VORPAL. VORPAL computes the fully self-consistent electromagnetic fields produced by the electron bunches, meaning that it accurately models space-charge effects as well as bunch-to-bunch beam loading effects and the effects of higher-order cavity modes, though these are beyond the scope of this paper. We compare results from VORPAL to the well-established space-charge code PARMELA, using RF fields produced by SUPERFISH, as a benchmarking exercise in which the two codes should agree well.

  5. Validation and benchmarking of two particle-in-cell codes for a glow discharge

    NASA Astrophysics Data System (ADS)

    Carlsson, Johan; Khrabrov, Alexander; Kaganovich, Igor; Sommerer, Timothy; Keating, David

    2017-01-01

    The two particle-in-cell codes EDIPIC and LSP are benchmarked and validated for a parallel-plate glow discharge in helium, in which the axial electric field had been carefully measured, primarily to investigate and improve the fidelity of their collision models. The scattering anisotropy of electron-impact ionization, as well as the value of the secondary-electron emission yield, are not well known in this case. The experimental uncertainty for the emission yield corresponds to a factor of two variation in the cathode current. If the emission yield is tuned to make the cathode current computed by each code match the experiment, the computed electric fields are in excellent agreement with each other, and within about 10% of the experimental value. The non-monotonic variation of the width of the cathode fall with the applied voltage seen in the experiment is reproduced by both codes. The electron temperature in the negative glow is within experimental error bars for both codes, but the density of slow trapped electrons is underestimated. A more detailed code comparison done for several synthetic cases of electron-beam injection into helium gas shows that the codes are in excellent agreement for ionization rate, as well as for elastic and excitation collisions with isotropic scattering pattern. The remaining significant discrepancies between the two codes are due to differences in their electron binary-collision models, and for anisotropic scattering due to elastic and excitation collisions.

  6. Beam Dynamics in an Electron Lens with the Warp Particle-in-cell Code

    SciTech Connect

    Stancari, Giulio; Moens, Vince; Redaelli, Stefano

    2014-07-01

    Electron lenses are a mature technique for beam manipulation in colliders and storage rings. In an electron lens, a pulsed, magnetically confined electron beam with a given current-density profile interacts with the circulating beam to obtain the desired effect. Electron lenses were used in the Fermilab Tevatron collider for beam-beam compensation, for abort-gap clearing, and for halo scraping. They will be used in RHIC at BNL for head-on beam-beam compensation, and their application to the Large Hadron Collider for halo control is under development. At Fermilab, electron lenses will be implemented as lattice elements for nonlinear integrable optics. The design of electron lenses requires tools to calculate the kicks and wakefields experienced by the circulating beam. We use the Warp particle-in-cell code to study generation, transport, and evolution of the electron beam. For the first time, a fully 3-dimensional code is used for this purpose.

  7. Towards robust algorithms for current deposition and dynamic load-balancing in a GPU particle in cell code

    NASA Astrophysics Data System (ADS)

    Rossi, Francesco; Londrillo, Pasquale; Sgattoni, Andrea; Sinigardi, Stefano; Turchetti, Giorgio

    2012-12-01

    We present `jasmine', an implementation of a fully relativistic, 3D, electromagnetic Particle-In-Cell (PIC) code, capable of running simulations in various laser plasma acceleration regimes on Graphics-Processing-Units (GPUs) HPC clusters. Standard energy/charge preserving FDTD-based algorithms have been implemented using double precision and quadratic (or arbitrary sized) shape functions for the particle weighting. When porting a PIC scheme to the GPU architecture (or, in general, a shared memory environment), the particle-to-grid operations (e.g. the evaluation of the current density) require special care to avoid memory inconsistencies and conflicts. Here we present a robust implementation of this operation that is efficient for any number of particles per cell and particle shape function order. Our algorithm exploits the exposed GPU memory hierarchy and avoids the use of atomic operations, which can hurt performance especially when many particles lay on the same cell. We show the code multi-GPU scalability results and present a dynamic load-balancing algorithm. The code is written using a python-based C++ meta-programming technique which translates in a high level of modularity and allows for easy performance tuning and simple extension of the core algorithms to various simulation schemes.

  8. CPIC: A Parallel Particle-In-Cell Code for Studying Spacecraft Charging

    NASA Astrophysics Data System (ADS)

    Meierbachtol, Collin; Delzanno, Gian Luca; Moulton, David; Vernon, Louis

    2015-11-01

    CPIC is a three-dimensional electrostatic particle-in-cell code designed for use with curvilinear meshes. One of its primary objectives is to aid in studying spacecraft charging in the magnetosphere. CPIC maintains near-optimal computational performance and scaling thanks to a mapped logical mesh field solver, and a hybrid physical-logical space particle mover (avoiding the need to track particles). CPIC is written for parallel execution, utilizing a combination of both OpenMP threading and MPI distributed memory. New capabilities are being actively developed and added to CPIC, including the ability to handle multi-block curvilinear mesh structures. Verification results comparing CPIC to analytic test problems will be provided. Particular emphasis will be placed on the charging and shielding of a sphere-in-plasma system. Simulated charging results of representative spacecraft geometries will also be presented. Finally, its performance capabilities will be demonstrated through parallel scaling data.

  9. Balancing Particle and Mesh Computation in a Particle-In-Cell Code

    SciTech Connect

    Worley, Patrick H; D'Azevedo, Eduardo; Hager, Robert; Ku, Seung-Hoe; Yoon, Eisung; Chang, C. S.

    2016-01-01

    The XGC1 plasma microturbulence particle-in-cell simulation code has both particle-based and mesh-based computational kernels that dominate performance. Both of these are subject to load imbalances that can degrade performance and that evolve during a simulation. Each separately can be addressed adequately, but optimizing just for one can introduce significant load imbalances in the other, degrading overall performance. A technique has been developed based on Golden Section Search that minimizes wallclock time given prior information on wallclock time, and on current particle distribution and mesh cost per cell, and also adapts to evolution in load imbalance in both particle and mesh work. In problems of interest this doubled the performance on full system runs on the XK7 at the Oak Ridge Leadership Computing Facility compared to load balancing only one of the kernels.

  10. On the Numerical Dispersion of Electromagnetic Particle-In-Cell Code : Finite Grid Instability

    SciTech Connect

    Meyers, Michael David; Huang, Chengkun; Zeng, Yong; Yi, Sunghwan; Albright, Brian James

    2014-07-15

    The Particle-In-Cell (PIC) method is widely used in relativistic particle beam and laser plasma modeling. However, the PIC method exhibits numerical instabilities that can render unphysical simulation results or even destroy the simulation. For electromagnetic relativistic beam and plasma modeling, the most relevant numerical instabilities are the finite grid instability and the numerical Cherenkov instability. We review the numerical dispersion relation of the electromagnetic PIC algorithm to analyze the origin of these instabilities. We rigorously derive the faithful 3D numerical dispersion of the PIC algorithm, and then specialize to the Yee FDTD scheme. In particular, we account for the manner in which the PIC algorithm updates and samples the fields and distribution function. Temporal and spatial phase factors from solving Maxwell's equations on the Yee grid with the leapfrog scheme are also explicitly accounted for. Numerical solutions to the electrostatic-like modes in the 1D dispersion relation for a cold drifting plasma are obtained for parameters of interest. In the succeeding analysis, we investigate how the finite grid instability arises from the interaction of the numerical 1D modes admitted in the system and their aliases. The most significant interaction is due critically to the correct representation of the operators in the dispersion relation. We obtain a simple analytic expression for the peak growth rate due to this interaction.

  11. A Particle-In-Cell Gun Code for Surface-Converter H- Ion Source Modeling

    NASA Astrophysics Data System (ADS)

    Chacon-Golcher, Edwin; Bowers, Kevin J.

    2007-08-01

    We present the current status of a particle-in-cell with Monte Carlo collisions (PIC-MCC) gun code under development at Los Alamos for the study of surface-converter H- ion sources. The program preserves a first-principles approach to a significant extent and simulates the production processes without ad hoc models within the plasma region. Some of its features include: solution of arbitrary electrostatic and magnetostatic fields in an axisymmetric (r,z) geometry to describe the self-consistent time evolution of a plasma; simulation of a multi-species (e-,H+,H2+,H3+,H-) plasma discharge from a neutral hydrogen gas and filament-originated seed electrons; full 2-dimensional (r,z) 3-velocity (vr,vz,vφ) dynamics for all species with exact conservation of the canonical angular momentum pφ; detailed collision physics between charged particles and neutrals and the ability to represent multiple smooth (not stair-stepped) electrodes of arbitrary shape and voltage whose surfaces may be secondary-particle emitters (H- and e-). The status of this development is discussed in terms of its physics content and current implementation details.

  12. Novel methods in the Particle-In-Cell accelerator Code-Framework Warp

    SciTech Connect

    Vay, J-L; Grote, D. P.; Cohen, R. H.; Friedman, A.

    2012-12-26

    The Particle-In-Cell (PIC) Code-Framework Warp is being developed by the Heavy Ion Fusion Science Virtual National Laboratory (HIFS-VNL) to guide the development of accelerators that can deliver beams suitable for high-energy density experiments and implosion of inertial fusion capsules. It is also applied in various areas outside the Heavy Ion Fusion program to the study and design of existing and next-generation high-energy accelerators, including the study of electron cloud effects and laser wakefield acceleration for example. This study presents an overview of Warp's capabilities, summarizing recent original numerical methods that were developed by the HIFS-VNL (including PIC with adaptive mesh refinement, a large-timestep 'drift-Lorentz' mover for arbitrarily magnetized species, a relativistic Lorentz invariant leapfrog particle pusher, simulations in Lorentz-boosted frames, an electromagnetic solver with tunable numerical dispersion and efficient stride-based digital filtering), with special emphasis on the description of the mesh refinement capability. In addition, selected examples of the applications of the methods to the abovementioned fields are given.

  13. Status report on the 'Merging' of the Electron-Cloud Code POSINST with the 3-D Accelerator PIC CODE WARP

    SciTech Connect

    Vay, J.-L.; Furman, M.A.; Azevedo, A.W.; Cohen, R.H.; Friedman, A.; Grote, D.P.; Stoltz, P.H.

    2004-04-19

    We have integrated the electron-cloud code POSINST [1] with WARP [2]--a 3-D parallel Particle-In-Cell accelerator code developed for Heavy Ion Inertial Fusion--so that the two can interoperate. Both codes are run in the same process, communicate through a Python interpreter (already used in WARP), and share certain key arrays (so far, particle positions and velocities). Currently, POSINST provides primary and secondary sources of electrons, beam bunch kicks, a particle mover, and diagnostics. WARP provides the field solvers and diagnostics. Secondary emission routines are provided by the Tech-X package CMEE.

  14. On the numerical dispersion of electromagnetic particle-in-cell code: Finite grid instability

    SciTech Connect

    Meyers, M.D.; Huang, C.-K.; Zeng, Y.; Yi, S.A.; Albright, B.J.

    2015-09-15

    The Particle-In-Cell (PIC) method is widely used in relativistic particle beam and laser plasma modeling. However, the PIC method exhibits numerical instabilities that can render unphysical simulation results or even destroy the simulation. For electromagnetic relativistic beam and plasma modeling, the most relevant numerical instabilities are the finite grid instability and the numerical Cherenkov instability. We review the numerical dispersion relation of the Electromagnetic PIC model. We rigorously derive the faithful 3-D numerical dispersion relation of the PIC model, for a simple, direct current deposition scheme, which does not conserve electric charge exactly. We then specialize to the Yee FDTD scheme. In particular, we clarify the presence of alias modes in an eigenmode analysis of the PIC model, which combines both discrete and continuous variables. The manner in which the PIC model updates and samples the fields and distribution function, together with the temporal and spatial phase factors from solving Maxwell's equations on the Yee grid with the leapfrog scheme, is explicitly accounted for. Numerical solutions to the electrostatic-like modes in the 1-D dispersion relation for a cold drifting plasma are obtained for parameters of interest. In the succeeding analysis, we investigate how the finite grid instability arises from the interaction of the numerical modes admitted in the system and their aliases. The most significant interaction is due critically to the correct representation of the operators in the dispersion relation. We obtain a simple analytic expression for the peak growth rate due to this interaction, which is then verified by simulation. We demonstrate that our analysis is readily extendable to charge conserving models.

  15. On the numerical dispersion of electromagnetic particle-in-cell code: Finite grid instability

    NASA Astrophysics Data System (ADS)

    Meyers, M. D.; Huang, C.-K.; Zeng, Y.; Yi, S. A.; Albright, B. J.

    2015-09-01

    The Particle-In-Cell (PIC) method is widely used in relativistic particle beam and laser plasma modeling. However, the PIC method exhibits numerical instabilities that can render unphysical simulation results or even destroy the simulation. For electromagnetic relativistic beam and plasma modeling, the most relevant numerical instabilities are the finite grid instability and the numerical Cherenkov instability. We review the numerical dispersion relation of the Electromagnetic PIC model. We rigorously derive the faithful 3-D numerical dispersion relation of the PIC model, for a simple, direct current deposition scheme, which does not conserve electric charge exactly. We then specialize to the Yee FDTD scheme. In particular, we clarify the presence of alias modes in an eigenmode analysis of the PIC model, which combines both discrete and continuous variables. The manner in which the PIC model updates and samples the fields and distribution function, together with the temporal and spatial phase factors from solving Maxwell's equations on the Yee grid with the leapfrog scheme, is explicitly accounted for. Numerical solutions to the electrostatic-like modes in the 1-D dispersion relation for a cold drifting plasma are obtained for parameters of interest. In the succeeding analysis, we investigate how the finite grid instability arises from the interaction of the numerical modes admitted in the system and their aliases. The most significant interaction is due critically to the correct representation of the operators in the dispersion relation. We obtain a simple analytic expression for the peak growth rate due to this interaction, which is then verified by simulation. We demonstrate that our analysis is readily extendable to charge conserving models.

  16. RHOCUBE: 3D density distributions modeling code

    NASA Astrophysics Data System (ADS)

    Nikutta, Robert; Agliozzo, Claudia

    2016-11-01

    RHOCUBE models 3D density distributions on a discrete Cartesian grid and their integrated 2D maps. It can be used for a range of applications, including modeling the electron number density in LBV shells and computing the emission measure. The RHOCUBE Python package provides several 3D density distributions, including a powerlaw shell, truncated Gaussian shell, constant-density torus, dual cones, and spiralling helical tubes, and can accept additional distributions. RHOCUBE provides convenient methods for shifts and rotations in 3D, and if necessary, an arbitrary number of density distributions can be combined into the same model cube and the integration ∫ dz performed through the joint density field.

  17. A 3D immersed finite element method with non-homogeneous interface flux jump for applications in particle-in-cell simulations of plasma-lunar surface interactions

    NASA Astrophysics Data System (ADS)

    Han, Daoru; Wang, Pu; He, Xiaoming; Lin, Tao; Wang, Joseph

    2016-09-01

    Motivated by the need to handle complex boundary conditions efficiently and accurately in particle-in-cell (PIC) simulations, this paper presents a three-dimensional (3D) linear immersed finite element (IFE) method with non-homogeneous flux jump conditions for solving electrostatic field involving complex boundary conditions using structured meshes independent of the interface. This method treats an object boundary as part of the simulation domain and solves the electric field at the boundary as an interface problem. In order to resolve charging on a dielectric surface, a new 3D linear IFE basis function is designed for each interface element to capture the electric field jump on the interface. Numerical experiments are provided to demonstrate the optimal convergence rates in L2 and H1 norms of the IFE solution. This new IFE method is integrated into a PIC method for simulations involving charging of a complex dielectric surface in a plasma. A numerical study of plasma-surface interactions at the lunar terminator is presented to demonstrate the applicability of the new method.

  18. Towards a fully kinetic 3D electromagnetic particle-in-cell model of streamer formation and dynamics in high-pressure electronegative gases

    NASA Astrophysics Data System (ADS)

    Rose, D. V.; Welch, D. R.; Clark, R. E.; Thoma, C.; Zimmerman, W. R.; Bruner, N.; Rambo, P. K.; Atherton, B. W.

    2011-09-01

    Streamer and leader formation in high pressure devices is dynamic process involving a broad range of physical phenomena. These include elastic and inelastic particle collisions in the gas, radiation generation, transport and absorption, and electrode interactions. Accurate modeling of these physical processes is essential for a number of applications, including high-current, laser-triggered gas switches. Towards this end, we present a new 3D implicit particle-in-cell simulation model of gas breakdown leading to streamer formation in electronegative gases. The model uses a Monte Carlo treatment for all particle interactions and includes discrete photon generation, transport, and absorption for ultra-violet and soft x-ray radiation. Central to the realization of this fully kinetic particle treatment is an algorithm that manages the total particle count by species while preserving the local momentum distribution functions and conserving charge [D. R. Welch, T. C. Genoni, R. E. Clark, and D. V. Rose, J. Comput. Phys. 227, 143 (2007)]. The simulation model is fully electromagnetic, making it capable of following, for example, the evolution of a gas switch from the point of laser-induced localized breakdown of the gas between electrodes through the successive stages of streamer propagation, initial electrode current connection, and high-current conduction channel evolution, where self-magnetic field effects are likely to be important. We describe the model details and underlying assumptions used and present sample results from 3D simulations of streamer formation and propagation in SF6.

  19. Particle-in-cell/accelerator code for space-charge dominated beam simulation

    SciTech Connect

    2012-05-08

    Warp is a multidimensional discrete-particle beam simulation program designed to be applicable where the beam space-charge is non-negligible or dominant. It is being developed in a collaboration among LLNL, LBNL and the University of Maryland. It was originally designed and optimized for heave ion fusion accelerator physics studies, but has received use in a broader range of applications, including for example laser wakefield accelerators, e-cloud studies in high enery accelerators, particle traps and other areas. At present it incorporates 3-D, axisymmetric (r,z) planar (x-z) and transverse slice (x,y) descriptions, with both electrostatic and electro-magnetic fields, and a beam envelope model. The code is guilt atop the Python interpreter language.

  20. PB3D: A new code for edge 3-D ideal linear peeling-ballooning stability

    NASA Astrophysics Data System (ADS)

    Weyens, T.; Sánchez, R.; Huijsmans, G.; Loarte, A.; García, L.

    2017-02-01

    A new numerical code PB3D (Peeling-Ballooning in 3-D) is presented. It implements and solves the intermediate-to-high-n ideal linear magnetohydrodynamic stability theory extended to full edge 3-D magnetic toroidal configurations in previous work [1]. The features that make PB3D unique are the assumptions on the perturbation structure through intermediate-to-high mode numbers n in general 3-D configurations, while allowing for displacement of the plasma edge. This makes PB3D capable of very efficient calculations of the full 3-D stability for the output of multiple equilibrium codes. As first verification, it is checked that results from the stability code MISHKA [2], which considers axisymmetric equilibrium configurations, are accurately reproduced, and these are then successfully extended to 3-D configurations, through comparison with COBRA [3], as well as using checks on physical consistency. The non-intuitive 3-D results presented serve as a tentative first proof of the capabilities of the code.

  1. Field ionization model implemented in Particle In Cell code and applied to laser-accelerated carbon ions

    SciTech Connect

    Nuter, R.; Gremillet, L.; Lefebvre, E.; Levy, A.; Ceccotti, T.; Martin, P.

    2011-03-15

    A novel numerical modeling of field ionization in PIC (Particle In Cell) codes is presented. Based on the quasistatic approximation of the ADK (Ammosov Delone Krainov) theory and implemented through a Monte Carlo scheme, this model allows for multiple ionization processes. Two-dimensional PIC simulations are performed to analyze the cut-off energies of the laser-accelerated carbon ions measured on the UHI 10 Saclay facility. The influence of the target and the hydrocarbon pollutant composition on laser-accelerated carbon ion energies is demonstrated.

  2. Multiscale Coupling of Monte Carlo Binary-Collision-Approximation Codes with Particle-in-Cells for Plasma-Material Interaction

    NASA Astrophysics Data System (ADS)

    Curreli, Davide; Lindquist, Kyle; Ruzic, David N.

    2013-10-01

    Techniques based on Monte Carlo Binary Collision Approximation (BCA) are widely used for the evaluation of particle interactions with matter, but rarely coupled with a consistent kinetic plasma solver like a Particle-in-Cell. The TRIM code [Eckstein; Biersack and Haggmark, 1980] and its version including dynamic-composition TRIDYN [Moller and Eckstein, 1984] are two popular implementations of BCA, where single-particle projectiles interact with a target of amorphous material according to the classical Carbon-Krypton interaction potential. The effect of surface roughness can be included as well, thanks to the Fractal-TRIM method [Ruzic and Chiu, 1989]. In the present study we couple BCA codes with Particles-in-Cells. The Lagrangian treatment of particle motion usually implemented in PiC codes suggests a natural coupling of PiC's with BCA's, even if a number of caveats has to be taken into account, related to the discrete nature of computational particles, to the difference between the two approaches and most important to the multiple spatial and temporal scales involved. The break down of BCA at low energies (unless the projectiles are channeling through an oriented crystal layer [Hobler and Betz, 2001]) has been supplemented by Yamamura's semi-empirical relations.

  3. Toroidal Electromagnetic Particle-in-Cell Code with Gyro-kinetic Electron and Fully-kinetic ion

    NASA Astrophysics Data System (ADS)

    Lin, Jingbo; Zhang, Wenlu; Liu, Pengfei; Li, Ding

    2016-10-01

    A kinetic simulation model has been developed using gyro-kinetic electron and fully-kinetic ion by removing fast gyro motion of electrons using the Lie-transform perturbation theory. A particle-in-cell kinetic code is developed based on this model in general magnetic flux coordinate systems, which is particularly suitable for simulations of toroidally confined plasma. Single particle motion and field solver are successfully verified respectively. Integrated electrostatic benchmark, for example the lower-hybrid wave (LHW) and ion Bernstein wave (IBW), shows a good agreement with theoretical results. Preliminary electromagnetic benchmark of fast wave at lower hybrid frequency range is also presented. This code can be a first-principal tool to investigate high frequency nonlinear phenomenon, such as parametric decay instability, during lower-hybrid current drive (LHCD) and ion cyclotron radio frequency heating (ICRF) with complex geometry effect included. Supported by National Special Research Program of China For ITER and National Natural Science Foundation of China.

  4. Multitasking the code ARC3D. [for computational fluid dynamics

    NASA Technical Reports Server (NTRS)

    Barton, John T.; Hsiung, Christopher C.

    1986-01-01

    The CRAY multitasking system was developed in order to utilize all four processors and sharply reduce the wall clock run time. This paper describes the techniques used to modify the computational fluid dynamics code ARC3D for this run and analyzes the achieved speedup. The ARC3D code solves either the Euler or thin-layer N-S equations using an implicit approximate factorization scheme. Results indicate that multitask processing can be used to achieve wall clock speedup factors of over three times, depending on the nature of the program code being used. Multitasking appears to be particularly advantageous for large-memory problems running on multiple CPU computers.

  5. Interface requirements to couple thermal-hydraulic codes to 3D neutronic codes

    SciTech Connect

    Langenbuch, S.; Austregesilo, H.; Velkov, K.

    1997-07-01

    The present situation of thermalhydraulics codes and 3D neutronics codes is briefly described and general considerations for coupling of these codes are discussed. Two different basic approaches of coupling are identified and their relative advantages and disadvantages are discussed. The implementation of the coupling for 3D neutronics codes in the system ATHLET is presented. Meanwhile, this interface is used for coupling three different 3D neutronics codes.

  6. Validation and Verification of Two Particle-In-Cells Codes for a Glow Discharge

    NASA Astrophysics Data System (ADS)

    Khrabrov, Alexander; Carlsson, Johan; Kaganovich, Igor; Sommerer, Timothy

    2016-09-01

    Two PIC codes, a research code EDIPIC and a commercial LSP, were benchmarked and validated for a parallel-plate glow discharge in helium, in which the axial electric field profile had been carefully mapped in experiment. Both codes reproduce very well the cathode fall and the negative glow regions of the discharge, including formation of high density plasma with very low-energy (0.1 eV) electrons in the negative glow. A detailed comparison was performed for several synthetic cases of electron-beam injection into helium gas and showed that the codes are in excellent agreement for ionization rate, as well as for collisional transport if isotropic scattering was assumed. However, the electron velocity distribution is anisotropic in the cathode fall; hence an adequate model of anisotropic scattering in elastic/inelastic collisions needs to be adopted. Because of the experimental uncertainty for the emission yield, it is tuned to make the cathode current computed by each code match the experimental values. The resulting computed electric fields are in excellent agreement with each other and within about 10% of the experimental value. In the process of validation, several issues with each of the codes were noted and addressed, including the necessity to use quality random number generators, and, for the commercial code, updating the field solver, the secondary electron emission, and the external circuit algorithms.

  7. A simulation of a capacitively coupled oxygen discharge using the oopd1 particle-in-cell Monte Carlo code

    NASA Astrophysics Data System (ADS)

    Gudmundsson, J. T.; Lieberman, M. A.; Wang, Ying; Verboncoeur, J. P.

    2009-10-01

    The oopd1 particle-in-cell Monte Carlo (PIC-MC) code is used to simulate a capacitively coupled discharge in oxygen. oopd1 is a one-dimensional object-oriented PIC-MC code [1] in which the model system has one spatial dimension and three velocity components. It contains models for planar, cylindrical, and spherical geometries and replaces the XPDx1 series [2], which is not object-oriented. The revised oxygen model includes, in addition to electrons, the oxygen molecule in ground state, the oxygen atom in ground state, the negative ion O^-, and the positive ions O^+ and O2^+. The cross sections for the collisions among the oxygen species have been significantly revised from earlier work using the xpdp1 code [3]. Here we explore the electron energy distribution function (EEDF), the ion energy distribution function (IEDF) and the density profiles for various pressures and driving frequencies. In particular we investigate the influence of the O^+ ion on the IEDF, we explore the influence of multiple driving frequencies, and we do comparisons to the previous xpdx1 codes. [1] J. P. Verboncoeur, A. B. Langdon, and N. T. Gladd, Comp. Phys. Comm. 87 (1995) 199 [2] J. P. Verboncoeur, M. V. Alves, V. Vahedi, and C. K. Birdsall, J. Comp. Physics 104 (1993) 321 [2] V. Vahedi and M. Surendra, Comp. Phys. Comm. 87 (1995) 179

  8. Particle-In-Cell (PIC) code simulation results and comparison with theory scaling laws for photoelectron-generated radiation

    SciTech Connect

    Dipp, T.M. |

    1993-12-01

    The generation of radiation via photoelectrons induced off of a conducting surface was explored using Particle-In-Cell (PIC) code computer simulations. Using the MAGIC PIC code, the simulations were performed in one dimension to handle the diverse scale lengths of the particles and fields in the problem. The simulations involved monoenergetic, nonrelativistic photoelectrons emitted normal to the illuminated conducting surface. A sinusoidal, 100% modulated, 6.3263 ns pulse train, as well as unmodulated emission, were used to explore the behavior of the particles, fields, and generated radiation. A special postprocessor was written to convert the PIC code simulated electron sheath into far-field radiation parameters by means of rigorous retarded time calculations. The results of the small-spot PIC simulations were used to generate various graphs showing resonance and nonresonance radiation quantities such as radiated lobe patterns, frequency, and power. A database of PIC simulation results was created and, using a nonlinear curve-fitting program, compared with theoretical scaling laws. Overall, the small-spot behavior predicted by the theoretical scaling laws was generally observed in the PIC simulation data, providing confidence in both the theoretical scaling laws and the PIC simulations.

  9. Performance Evaluation of the Electrostatic Particle-in-Cell Code hPIC on the Blue Waters Supercomputer

    NASA Astrophysics Data System (ADS)

    Khaziev, Rinat; Mokos, Ryan; Curreli, Davide

    2016-10-01

    The newly-developed hPIC code is a kinetic-kinetic electrostatic Particle-in-Cell application, targeted at large-scale simulations of Plasma-Material Interactions. The code can simulate multi-component strongly-magnetized plasmas in a region close to the wall, including the magnetic sheath/presheath and the first surface layers, which release material impurities. The Poisson solver is based on PETSc conjugate gradient with BoomerAMG algebraic multigrid preconditioners. Scaling tests on the Blue Waters supercomputer have demonstrated good strong-scaling up to 262,144 cores and excellent weak-scaling (tested up to 64,000 cores). In this presentation, we will make an overview of the on-node optimization activities and the main code features, as well as provide a detailed analysis of the results of the verification tests performed. Work supported by the NCSA Faculty Fellowship Program at the National Center for Supercomputing Applications; supercomputing resources provided by Exploratory Blue Waters Allocation.

  10. RELAP5-3D code validation for RBMK phenomena

    SciTech Connect

    Fisher, J.E.

    1999-09-01

    The RELAP5-3D thermal-hydraulic code was assessed against Japanese Safety Experiment Loop (SEL) and Heat Transfer Loop (HTL) tests. These tests were chosen because the phenomena present are applicable to analyses of Russian RBMK reactor designs. The assessment cases included parallel channel flow fluctuation tests at reduced and normal water levels, a channel inlet pipe rupture test, and a high power, density wave oscillation test. The results showed that RELAP5-3D has the capability to adequately represent these RBMK-related phenomena.

  11. RELAP5-3D Code Validation for RBMK Phenomena

    SciTech Connect

    Fisher, James Ebberly

    1999-09-01

    The RELAP5-3D thermal-hydraulic code was assessed against Japanese Safety Experiment Loop (SEL) and Heat Transfer Loop (HTL) tests. These tests were chosen because the phenomena present are applicable to analyses of Russian RBMK reactor designs. The assessment cases included parallel channel flow fluctuation tests at reduced and normal water levels, a channel inlet pipe rupture test, and a high power, density wave oscillation test. The results showed that RELAP5-3D has the capability to adequately represent these RBMK-related phenomena.

  12. Performance of the UCAN2 Gyrokinetic Particle In Cell (PIC) Code on Two Massively Parallel Mainframes with Intel ``Sandy Bridge'' Processors

    NASA Astrophysics Data System (ADS)

    Leboeuf, Jean-Noel; Decyk, Viktor; Newman, David; Sanchez, Raul

    2013-10-01

    The massively parallel, 2D domain-decomposed, nonlinear, 3D, toroidal, electrostatic, gyrokinetic, Particle in Cell (PIC), Cartesian geometry UCAN2 code, with particle ions and adiabatic electrons, has been ported to two emerging mainframes. These two computers, one at NERSC in the US built by Cray named Edison and the other at the Barcelona Supercomputer Center (BSC) in Spain built by IBM named MareNostrum III (MNIII) just happen to share the same Intel ``Sandy Bridge'' processors. The successful port of UCAN2 to MNIII which came online first has enabled us to be up and running efficiently in record time on Edison. Overall, the performance of UCAN2 on Edison is superior to that on MNIII, particularly at large numbers of processors (>1024) for the same Intel IFORT compiler. This appears to be due to different MPI modules (OpenMPI on MNIII and MPICH2 on Edison) and different interconnection networks (Infiniband on MNIII and Cray's Aries on Edison) on the two mainframes. Details of these ports and comparative benchmarks are presented. Work supported by OFES, USDOE, under contract no. DE-FG02-04ER54741 with the University of Alaska at Fairbanks.

  13. VISRAD, 3-D Target Design and Radiation Simulation Code

    NASA Astrophysics Data System (ADS)

    Golovkin, Igor; Macfarlane, Joseph; Golovkina, Viktoriya

    2016-10-01

    The 3-D view factor code VISRAD is widely used in designing HEDP experiments at major laser and pulsed-power facilities, including NIF, OMEGA, OMEGA-EP, ORION, LMJ, Z, and PLX. It simulates target designs by generating a 3-D grid of surface elements, utilizing a variety of 3-D primitives and surface removal algorithms, and can be used to compute the radiation flux throughout the surface element grid by computing element-to-element view factors and solving power balance equations. Target set-up and beam pointing are facilitated by allowing users to specify positions and angular orientations using a variety of coordinates systems (e.g., that of any laser beam, target component, or diagnostic port). Analytic modeling for laser beam spatial profiles for OMEGA DPPs and NIF CPPs is used to compute laser intensity profiles throughout the grid of surface elements. We will discuss recent improvements to the software package and plans for future developments.

  14. Beam Optics Analysis - An Advanced 3D Trajectory Code

    SciTech Connect

    Ives, R. Lawrence; Bui, Thuc; Vogler, William; Neilson, Jeff; Read, Mike; Shephard, Mark; Bauer, Andrew; Datta, Dibyendu; Beal, Mark

    2006-01-03

    Calabazas Creek Research, Inc. has completed initial development of an advanced, 3D program for modeling electron trajectories in electromagnetic fields. The code is being used to design complex guns and collectors. Beam Optics Analysis (BOA) is a fully relativistic, charged particle code using adaptive, finite element meshing. Geometrical input is imported from CAD programs generating ACIS-formatted files. Parametric data is inputted using an intuitive, graphical user interface (GUI), which also provides control of convergence, accuracy, and post processing. The program includes a magnetic field solver, and magnetic information can be imported from Maxwell 2D/3D and other programs. The program supports thermionic emission and injected beams. Secondary electron emission is also supported, including multiple generations. Work on field emission is in progress as well as implementation of computer optimization of both the geometry and operating parameters. The principle features of the program and its capabilities are presented.

  15. CALTRANS: A parallel, deterministic, 3D neutronics code

    SciTech Connect

    Carson, L.; Ferguson, J.; Rogers, J.

    1994-04-01

    Our efforts to parallelize the deterministic solution of the neutron transport equation has culminated in a new neutronics code CALTRANS, which has full 3D capability. In this article, we describe the layout and algorithms of CALTRANS and present performance measurements of the code on a variety of platforms. Explicit implementation of the parallel algorithms of CALTRANS using both the function calls of the Parallel Virtual Machine software package (PVM 3.2) and the Meiko CS-2 tagged message passing library (based on the Intel NX/2 interface) are provided in appendices.

  16. Towards a 3D Space Radiation Transport Code

    NASA Technical Reports Server (NTRS)

    Wilson, J. W.; Tripathl, R. K.; Cicomptta, F. A.; Heinbockel, J. H.; Tweed, J.

    2002-01-01

    High-speed computational procedures for space radiation shielding have relied on asymptotic expansions in terms of the off-axis scatter and replacement of the general geometry problem by a collection of flat plates. This type of solution was derived for application to human rated systems in which the radius of the shielded volume is large compared to the off-axis diffusion limiting leakage at lateral boundaries. Over the decades these computational codes are relatively complete and lateral diffusion effects are now being added. The analysis for developing a practical full 3D space shielding code is presented.

  17. Streamlining of the RELAP5-3D Code

    SciTech Connect

    Mesina, George L; Hykes, Joshua; Guillen, Donna Post

    2007-11-01

    RELAP5-3D is widely used by the nuclear community to simulate general thermal hydraulic systems and has proven to be so versatile that the spectrum of transient two-phase problems that can be analyzed has increased substantially over time. To accommodate the many new types of problems that are analyzed by RELAP5-3D, both the physics and numerical methods of the code have been continuously improved. In the area of computational methods and mathematical techniques, many upgrades and improvements have been made decrease code run time and increase solution accuracy. These include vectorization, parallelization, use of improved equation solvers for thermal hydraulics and neutron kinetics, and incorporation of improved library utilities. In the area of applied nuclear engineering, expanded capabilities include boron and level tracking models, radiation/conduction enclosure model, feedwater heater and compressor components, fluids and corresponding correlations for modeling Generation IV reactor designs, and coupling to computational fluid dynamics solvers. Ongoing and proposed future developments include improvements to the two-phase pump model, conversion to FORTRAN 90, and coupling to more computer programs. This paper summarizes the general improvements made to RELAP5-3D, with an emphasis on streamlining the code infrastructure for improved maintenance and development. With all these past, present and planned developments, it is necessary to modify the code infrastructure to incorporate modifications in a consistent and maintainable manner. Modifying a complex code such as RELAP5-3D to incorporate new models, upgrade numerics, and optimize existing code becomes more difficult as the code grows larger. The difficulty of this as well as the chance of introducing errors is significantly reduced when the code is structured. To streamline the code into a structured program, a commercial restructuring tool, FOR_STRUCT, was applied to the RELAP5-3D source files. The

  18. EMPulse, a new 3-D simulation code for electromagnetic pulse studies

    NASA Astrophysics Data System (ADS)

    Cohen, Bruce; Eng, Chester; Farmer, William; Friedman, Alex; Grote, David; Kruger, Hans; Larson, David

    2016-10-01

    EMPulse is a comprehensive and modern 3-D simulation code for electro-magnetic pulse (EMP) formation and propagation studies, being developed at LLNL as part of a suite of codes to study E1 EMP originating from prompt gamma rays. EMPulse builds upon the open-source Warp particle-in-cell code framework developed by members of this team and collaborators at other institutions. The goal of this endeavor is a new tool enabling the detailed and self-consistent study of multi-dimensional effects in geometries that have typically been treated only approximately. Here we present an overview of the project, the models and methods that have been developed and incorporated into EMPulse, tests of these models, comparisons to simulations undertaken in CHAP-lite (derived from the legacy code CHAP due to C. Longmire and co-workers), and some approaches to increased computational efficiency being studied within our project. This work was performed under the auspices of the U.S. DOE by Lawrence Livermore National Security, LLC, Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  19. Preliminary investigations on 3D PIC simulation of DPHC structure using NEPTUNE3D code

    NASA Astrophysics Data System (ADS)

    Zhao, Hailong; Dong, Ye; Zhou, Haijing; Zou, Wenkang; Wang, Qiang

    2016-10-01

    Cubic region (34cm × 34cm × 18cm) including the double post-hole convolute (DPHC) structure was chosen to perform a series of fully 3D PIC simulations using NEPTUNE3D codes, massive data ( 200GB) could be acquired and solved in less than 5 hours. Cold-chamber tests were performed during which only cathode electron emission was considered without temperature rise or ion emission, current loss efficiency was estimated by comparisons between output magnetic field profiles with or without electron emission. PIC simulation results showed three stages of current transforming process with election emission in DPHC structure, the maximum ( 20%) current loss was 437kA at 15ns, while only 0.46% 0.48% was lost when driving current reached its peak. DPHC structure proved valuable functions during energy transform process in PTS facility, and NEPTUNE3D provided tools to explore this sophisticated physics. Project supported by the National Natural Science Foundation of China, Grant No. 11571293, 11505172.

  20. Axisymmetric Implementation for 3D-Based DSMC Codes

    NASA Technical Reports Server (NTRS)

    Stewart, Benedicte; Lumpkin, F. E.; LeBeau, G. J.

    2011-01-01

    The primary objective in developing NASA s DSMC Analysis Code (DAC) was to provide a high fidelity modeling tool for 3D rarefied flows such as vacuum plume impingement and hypersonic re-entry flows [1]. The initial implementation has been expanded over time to offer other capabilities including a novel axisymmetric implementation. Because of the inherently 3D nature of DAC, this axisymmetric implementation uses a 3D Cartesian domain and 3D surfaces. Molecules are moved in all three dimensions but their movements are limited by physical walls to a small wedge centered on the plane of symmetry (Figure 1). Unfortunately, far from the axis of symmetry, the cell size in the direction perpendicular to the plane of symmetry (the Z-direction) may become large compared to the flow mean free path. This frequently results in inaccuracies in these regions of the domain. A new axisymmetric implementation is presented which aims to solve this issue by using Bird s approach for the molecular movement while preserving the 3D nature of the DAC software [2]. First, the computational domain is similar to that previously used such that a wedge must still be used to define the inflow surface and solid walls within the domain. As before molecules are created inside the inflow wedge triangles but they are now rotated back to the symmetry plane. During the move step, molecules are moved in 3D but instead of interacting with the wedge walls, the molecules are rotated back to the plane of symmetry at the end of the move step. This new implementation was tested for multiple flows over axisymmetric shapes, including a sphere, a cone, a double cone and a hollow cylinder. Comparisons to previous DSMC solutions and experiments, when available, are made.

  1. FARGO3D: A NEW GPU-ORIENTED MHD CODE

    SciTech Connect

    Benitez-Llambay, Pablo; Masset, Frédéric S. E-mail: masset@icf.unam.mx

    2016-03-15

    We present the FARGO3D code, recently publicly released. It is a magnetohydrodynamics code developed with special emphasis on the physics of protoplanetary disks and planet–disk interactions, and parallelized with MPI. The hydrodynamics algorithms are based on finite-difference upwind, dimensionally split methods. The magnetohydrodynamics algorithms consist of the constrained transport method to preserve the divergence-free property of the magnetic field to machine accuracy, coupled to a method of characteristics for the evaluation of electromotive forces and Lorentz forces. Orbital advection is implemented, and an N-body solver is included to simulate planets or stars interacting with the gas. We present our implementation in detail and present a number of widely known tests for comparison purposes. One strength of FARGO3D is that it can run on either graphical processing units (GPUs) or central processing units (CPUs), achieving large speed-up with respect to CPU cores. We describe our implementation choices, which allow a user with no prior knowledge of GPU programming to develop new routines for CPUs, and have them translated automatically for GPUs.

  2. Depth estimation from multiple coded apertures for 3D interaction

    NASA Astrophysics Data System (ADS)

    Suh, Sungjoo; Choi, Changkyu; Park, Dusik

    2013-09-01

    In this paper, we propose a novel depth estimation method from multiple coded apertures for 3D interaction. A flat panel display is transformed into lens-less multi-view cameras which consist of multiple coded apertures. The sensor panel behind the display captures the scene in front of the display through the imaging pattern of the modified uniformly redundant arrays (MURA) on the display panel. To estimate the depth of an object in the scene, we first generate a stack of synthetically refocused images at various distances by using the shifting and averaging approach for the captured coded images. And then, an initial depth map is obtained by applying a focus operator to a stack of the refocused images for each pixel. Finally, the depth is refined by fitting a parametric focus model to the response curves near the initial depth estimates. To demonstrate the effectiveness of the proposed algorithm, we construct an imaging system to capture the scene in front of the display. The system consists of a display screen and an x-ray detector without a scintillator layer so as to act as a visible sensor panel. Experimental results confirm that the proposed method accurately determines the depth of an object including a human hand in front of the display by capturing multiple MURA coded images, generating refocused images at different depth levels, and refining the initial depth estimates.

  3. The CONV-3D code for DNS CFD calculation

    NASA Astrophysics Data System (ADS)

    Chudanov, Vladimir; ALCF ThermHydraX Team

    2014-03-01

    The CONV-3D code for DNS CFD calculation of thermal and hydrodynamics on Fast Reactor with use of supercomputers is developed. This code is highly effective in a scalability at the high performance computers such as ``Chebyshev'', ``Lomonosov'' (Moscow State University, Russia), Blue Gene/Q(ALCF MIRA, ANL). The scalability is reached up to 106 processors. The code was validated on a series of the well known tests in a wide range of Rayleigh (106-1016) and Reynolds (103-105. Such code was validated on the blind tests OECD/NEA of the turbulent intermixing in horizontal subchannels of the fuel assembly at normal pressure and temperature (Matis-H), of the flows in T-junction and the report IBRAE/ANL was published. The good coincidence of numerical predictions with experimental data was reached, that specifies applicability of the developed approach for a prediction of thermal and hydrodynamics in a boundary layer at small Prandtl that is characteristic of the liquid metal reactors. Project Name: ThermHydraX. Project Title: U.S.-Russia Collaboration on Cross-Verification and Validation in Thermal Hydraulics.

  4. MOM3D/EM-ANIMATE - MOM3D WITH ANIMATION CODE

    NASA Technical Reports Server (NTRS)

    Shaeffer, J. F.

    1994-01-01

    compare surface-current distribution due to various initial excitation directions or electric field orientations. The program can accept up to 50 planes of field data consisting of a grid of 100 by 100 field points. These planes of data are user selectable and can be viewed individually or concurrently. With these preset limits, the program requires 55 megabytes of core memory to run. These limits can be changed in the header files to accommodate the available core memory of an individual workstation. An estimate of memory required can be made as follows: approximate memory in bytes equals (number of nodes times number of surfaces times 14 variables times bytes per word, typically 4 bytes per floating point) plus (number of field planes times number of nodes per plane times 21 variables times bytes per word). This gives the approximate memory size required to store the field and surface-current data. The total memory size is approximately 400,000 bytes plus the data memory size. The animation calculations are performed in real time at any user set time step. For Silicon Graphics Workstations that have multiple processors, this program has been optimized to perform these calculations on multiple processors to increase animation rates. The optimized program uses the SGI PFA (Power FORTRAN Accelerator) library. On single processor machines, the parallelization directives are seen as comments to the program and will have no effect on compilation or execution. MOM3D and EM-ANIMATE are written in FORTRAN 77 for interactive or batch execution on SGI series computers running IRIX 3.0 or later. The RAM requirements for these programs vary with the size of the problem being solved. A minimum of 30Mb of RAM is required for execution of EM-ANIMATE; however, the code may be modified to accommodate the available memory of an individual workstation. For EM-ANIMATE, twenty-four bit, double-buffered color capability is suggested, but not required. Sample executables and sample input and

  5. RHALE: A 3-D MMALE code for unstructured grids

    SciTech Connect

    Peery, J.S.; Budge, K.G.; Wong, M.K.W.; Trucano, T.G.

    1993-08-01

    This paper describes RHALE, a multi-material arbitrary Lagrangian-Eulerian (MMALE) shock physics code. RHALE is the successor to CTH, Sandia`s 3-D Eulerian shock physics code, and will be capable of solving problems that CTH cannot adequately address. We discuss the Lagrangian solid mechanics capabilities of RHALE, which include arbitrary mesh connectivity, superior artificial viscosity, and improved material models. We discuss the MMALE algorithms that have been extended for arbitrary grids in both two- and three-dimensions. The MMALE addition to RHALE provides the accuracy of a Lagrangian code while allowing a calculation to proceed under very large material distortions. Coupling an arbitrary quadrilateral or hexahedral grid to the MMALE solution facilitates modeling of complex shapes with a greatly reduced number of computational cells. RHALE allows regions of a problem to be modeled with Lagrangian, Eulerian or ALE meshes. In addition, regions can switch from Lagrangian to ALE to Eulerian based on user input or mesh distortion. For ALE meshes, new node locations are determined with a variety of element based equipotential schemes. Element quantities are advected with donor, van Leer, or Super-B algorithms. Nodal quantities are advected with the second order SHALE or HIS algorithms. Material interfaces are determined with a modified Young`s high resolution interface tracker or the SLIC algorithm. RHALE has been used to model many problems of interest to the mechanics, hypervelocity impact, and shock physics communities. Results of a sampling of these problems are presented in this paper.

  6. Image sequence coding using 3D scene models

    NASA Astrophysics Data System (ADS)

    Girod, Bernd

    1994-09-01

    The implicit and explicit use of 3D models for image sequence coding is discussed. For implicit use, a 3D model can be incorporated into motion compensating prediction. A scheme that estimates the displacement vector field with a rigid body motion constraint by recovering epipolar lines from an unconstrained displacement estimate and then repeating block matching along the epipolar line is proposed. Experimental results show that an improved displacement vector field can be obtained with a rigid body motion constraint. As an example for explicit use, various results with a facial animation model for videotelephony are discussed. A 13 X 16 B-spline mask can be adapted automatically to individual faces and is used to generate facial expressions based on FACS. A depth-from-defocus range camera suitable for real-time facial motion tracking is described. Finally, the real-time facial animation system `Traugott' is presented that has been used to generate several hours of broadcast video. Experiments suggest that a videophone system based on facial animation might require a transmission bitrate of 1 kbit/s or below.

  7. 3D neutronic codes coupled with thermal-hydraulic system codes for PWR, and BWR and VVER reactors

    SciTech Connect

    Langenbuch, S.; Velkov, K.; Lizorkin, M.

    1997-07-01

    This paper describes the objectives of code development for coupling 3D neutronics codes with thermal-hydraulic system codes. The present status of coupling ATHLET with three 3D neutronics codes for VVER- and LWR-reactors is presented. After describing the basic features of the 3D neutronic codes BIPR-8 from Kurchatov-Institute, DYN3D from Research Center Rossendorf and QUABOX/CUBBOX from GRS, first applications of coupled codes for different transient and accident scenarios are presented. The need of further investigations is discussed.

  8. TWANG-PIC, a novel gyro-averaged one-dimensional particle-in-cell code for interpretation of gyrotron experiments

    SciTech Connect

    Braunmueller, F. Tran, T. M.; Alberti, S.; Genoud, J.; Hogge, J.-Ph.; Tran, M. Q.; Vuillemin, Q.

    2015-06-15

    A new gyrotron simulation code for simulating the beam-wave interaction using a monomode time-dependent self-consistent model is presented. The new code TWANG-PIC is derived from the trajectory-based code TWANG by describing the electron motion in a gyro-averaged one-dimensional Particle-In-Cell (PIC) approach. In comparison to common PIC-codes, it is distinguished by its computation speed, which makes its use in parameter scans and in experiment interpretation possible. A benchmark of the new code is presented as well as a comparative study between the two codes. This study shows that the inclusion of a time-dependence in the electron equations, as it is the case in the PIC-approach, is mandatory for simulating any kind of non-stationary oscillations in gyrotrons. Finally, the new code is compared with experimental results and some implications of the violated model assumptions in the TWANG code are disclosed for a gyrotron experiment in which non-stationary regimes have been observed and for a critical case that is of interest in high power gyrotron development.

  9. A Magnetic Diagnostic Code for 3D Fusion Equilibria

    SciTech Connect

    Samuel A. Lazerson, S. Sakakibara and Y. Suzuki

    2013-03-12

    A synthetic magnetic diagnostics code for fusion equilibria is presented. This code calculates the response of various magnetic diagnostics to the equilibria produced by the VMEC and PIES codes. This allows for treatment of equilibria with both good nested flux surfaces and those with stochastic regions. DIAGNO v2.0 builds upon previous codes through the implementation of a virtual casing principle. The code is validated against a vacuum shot on the Large Helical Device (LHD) where the vertical field was ramped. As an exercise of the code, the diagnostic response for various equilibria are calculated on the LHD.

  10. MOM3D/EM-ANIMATE - MOM3D WITH ANIMATION CODE

    NASA Technical Reports Server (NTRS)

    Shaeffer, J. F.

    1994-01-01

    MOM3D (LAR-15074) is a FORTRAN method-of-moments electromagnetic analysis algorithm for open or closed 3-D perfectly conducting or resistive surfaces. Radar cross section with plane wave illumination is the prime analysis emphasis; however, provision is also included for local port excitation for computing antenna gain patterns and input impedances. The Electric Field Integral Equation form of Maxwell's equations is solved using local triangle couple basis and testing functions with a resultant system impedance matrix. The analysis emphasis is not only for routine RCS pattern predictions, but also for phenomenological diagnostics: bistatic imaging, currents, and near scattered/total electric fields. The images, currents, and near fields are output in form suitable for animation. MOM3D computes the full backscatter and bistatic radar cross section polarization scattering matrix (amplitude and phase), body currents and near scattered and total fields for plane wave illumination. MOM3D also incorporates a new bistatic k space imaging algorithm for computing down range and down/cross range diagnostic images using only one matrix inversion. MOM3D has been made memory and cpu time efficient by using symmetric matrices, symmetric geometry, and partitioned fixed and variable geometries suitable for design iteration studies. MOM3D may be run interactively or in batch mode on 486 IBM PCs and compatibles, UNIX workstations or larger computers. A 486 PC with 16 megabytes of memory has the potential to solve a 30 square wavelength (containing 3000 unknowns) symmetric configuration. Geometries are described using a triangular mesh input in the form of a list of spatial vertex points and a triangle join connection list. The EM-ANIMATE (LAR-15075) program is a specialized visualization program that displays and animates the near-field and surface-current solutions obtained from an electromagnetics program, in particular, that from MOM3D. The EM-ANIMATE program is windows based and

  11. Nonlinear 3D MHD verification study: SpeCyl and PIXIE3D codes for RFP and Tokamak plasmas

    NASA Astrophysics Data System (ADS)

    Bonfiglio, D.; Cappello, S.; Chacon, L.

    2010-11-01

    A strong emphasis is presently placed in the fusion community on reaching predictive capability of computational models. An essential requirement of such endeavor is the process of assessing the mathematical correctness of computational tools, termed verification [1]. We present here a successful nonlinear cross-benchmark verification study between the 3D nonlinear MHD codes SpeCyl [2] and PIXIE3D [3]. Excellent quantitative agreement is obtained in both 2D and 3D nonlinear visco-resistive dynamics for reversed-field pinch (RFP) and tokamak configurations [4]. RFP dynamics, in particular, lends itself as an ideal non trivial test-bed for 3D nonlinear verification. Perspectives for future application of the fully-implicit parallel code PIXIE3D to RFP physics, in particular to address open issues on RFP helical self-organization, will be provided. [4pt] [1] M. Greenwald, Phys. Plasmas 17, 058101 (2010) [0pt] [2] S. Cappello and D. Biskamp, Nucl. Fusion 36, 571 (1996) [0pt] [3] L. Chac'on, Phys. Plasmas 15, 056103 (2008) [0pt] [4] D. Bonfiglio, L. Chac'on and S. Cappello, Phys. Plasmas 17 (2010)

  12. Recent Improvements To The RELAP5-3D Code

    SciTech Connect

    Richard A. Riemke; Paul D. Bayless; S. Michael Modro

    2006-06-01

    The RELAP5-3D computer program has been recently improved. Changes were made as follows: (1) heat structures are allowed to be decoupled from hydrodynamic components, (2) built-in material properties for heat structures have been made consistent with those in MATPRO and the Nuclear Systems Materials Handbook (they are now documented in the RELAP5-3D manual, (3) Schrock's flow quality correlation is now used for a downward oriented junction from a horizontal volume for the stratification entrainment/pullthrough model.

  13. Verification and Validation of the k-kL Turbulence Model in FUN3D and CFL3D Codes

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, Khaled S.; Carlson, Jan-Renee; Rumsey, Christopher L.

    2015-01-01

    The implementation of the k-kL turbulence model using multiple computational uid dy- namics (CFD) codes is reported herein. The k-kL model is a two-equation turbulence model based on Abdol-Hamid's closure and Menter's modi cation to Rotta's two-equation model. Rotta shows that a reliable transport equation can be formed from the turbulent length scale L, and the turbulent kinetic energy k. Rotta's equation is well suited for term-by-term mod- eling and displays useful features compared to other two-equation models. An important di erence is that this formulation leads to the inclusion of higher-order velocity derivatives in the source terms of the scale equations. This can enhance the ability of the Reynolds- averaged Navier-Stokes (RANS) solvers to simulate unsteady ows. The present report documents the formulation of the model as implemented in the CFD codes Fun3D and CFL3D. Methodology, veri cation and validation examples are shown. Attached and sepa- rated ow cases are documented and compared with experimental data. The results show generally very good comparisons with canonical and experimental data, as well as matching results code-to-code. The results from this formulation are similar or better than results using the SST turbulence model.

  14. 3D unstructured-mesh radiation transport codes

    SciTech Connect

    Morel, J.

    1997-12-31

    Three unstructured-mesh radiation transport codes are currently being developed at Los Alamos National Laboratory. The first code is ATTILA, which uses an unstructured tetrahedral mesh in conjunction with standard Sn (discrete-ordinates) angular discretization, standard multigroup energy discretization, and linear-discontinuous spatial differencing. ATTILA solves the standard first-order form of the transport equation using source iteration in conjunction with diffusion-synthetic acceleration of the within-group source iterations. DANTE is designed to run primarily on workstations. The second code is DANTE, which uses a hybrid finite-element mesh consisting of arbitrary combinations of hexahedra, wedges, pyramids, and tetrahedra. DANTE solves several second-order self-adjoint forms of the transport equation including the even-parity equation, the odd-parity equation, and a new equation called the self-adjoint angular flux equation. DANTE also offers three angular discretization options: $S{_}n$ (discrete-ordinates), $P{_}n$ (spherical harmonics), and $SP{_}n$ (simplified spherical harmonics). DANTE is designed to run primarily on massively parallel message-passing machines, such as the ASCI-Blue machines at LANL and LLNL. The third code is PERICLES, which uses the same hybrid finite-element mesh as DANTE, but solves the standard first-order form of the transport equation rather than a second-order self-adjoint form. DANTE uses a standard $S{_}n$ discretization in angle in conjunction with trilinear-discontinuous spatial differencing, and diffusion-synthetic acceleration of the within-group source iterations. PERICLES was initially designed to run on workstations, but a version for massively parallel message-passing machines will be built. The three codes will be described in detail and computational results will be presented.

  15. MOM3D method of moments code theory manual

    NASA Technical Reports Server (NTRS)

    Shaeffer, John F.

    1992-01-01

    MOM3D is a FORTRAN algorithm that solves Maxwell's equations as expressed via the electric field integral equation for the electromagnetic response of open or closed three dimensional surfaces modeled with triangle patches. Two joined triangles (couples) form the vector current unknowns for the surface. Boundary conditions are for perfectly conducting or resistive surfaces. The impedance matrix represents the fundamental electromagnetic interaction of the body with itself. A variety of electromagnetic analysis options are possible once the impedance matrix is computed including backscatter radar cross section (RCS), bistatic RCS, antenna pattern prediction for user specified body voltage excitation ports, RCS image projection showing RCS scattering center locations, surface currents excited on the body as induced by specified plane wave excitation, and near field computation for the electric field on or near the body.

  16. Implementation of a flexible and scalable particle-in-cell method for massively parallel computations in the mantle convection code ASPECT

    NASA Astrophysics Data System (ADS)

    Gassmöller, Rene; Bangerth, Wolfgang

    2016-04-01

    Particle-in-cell methods have a long history and many applications in geodynamic modelling of mantle convection, lithospheric deformation and crustal dynamics. They are primarily used to track material information, the strain a material has undergone, the pressure-temperature history a certain material region has experienced, or the amount of volatiles or partial melt present in a region. However, their efficient parallel implementation - in particular combined with adaptive finite-element meshes - is complicated due to the complex communication patterns and frequent reassignment of particles to cells. Consequently, many current scientific software packages accomplish this efficient implementation by specifically designing particle methods for a single purpose, like the advection of scalar material properties that do not evolve over time (e.g., for chemical heterogeneities). Design choices for particle integration, data storage, and parallel communication are then optimized for this single purpose, making the code relatively rigid to changing requirements. Here, we present the implementation of a flexible, scalable and efficient particle-in-cell method for massively parallel finite-element codes with adaptively changing meshes. Using a modular plugin structure, we allow maximum flexibility of the generation of particles, the carried tracer properties, the advection and output algorithms, and the projection of properties to the finite-element mesh. We present scaling tests ranging up to tens of thousands of cores and tens of billions of particles. Additionally, we discuss efficient load-balancing strategies for particles in adaptive meshes with their strengths and weaknesses, local particle-transfer between parallel subdomains utilizing existing communication patterns from the finite element mesh, and the use of established parallel output algorithms like the HDF5 library. Finally, we show some relevant particle application cases, compare our implementation to a

  17. Towards the optimization of a gyrokinetic Particle-In-Cell (PIC) code on large-scale hybrid architectures

    NASA Astrophysics Data System (ADS)

    Ohana, N.; Jocksch, A.; Lanti, E.; Tran, T. M.; Brunner, S.; Gheller, C.; Hariri, F.; Villard, L.

    2016-11-01

    With the aim of enabling state-of-the-art gyrokinetic PIC codes to benefit from the performance of recent multithreaded devices, we developed an application from a platform called the “PIC-engine” [1, 2, 3] embedding simplified basic features of the PIC method. The application solves the gyrokinetic equations in a sheared plasma slab using B-spline finite elements up to fourth order to represent the self-consistent electrostatic field. Preliminary studies of the so-called Particle-In-Fourier (PIF) approach, which uses Fourier modes as basis functions in the periodic dimensions of the system instead of the real-space grid, show that this method can be faster than PIC for simulations with a small number of Fourier modes. Similarly to the PIC-engine, multiple levels of parallelism have been implemented using MPI+OpenMP [2] and MPI+OpenACC [1], the latter exploiting the computational power of GPUs without requiring complete code rewriting. It is shown that sorting particles [3] can lead to performance improvement by increasing data locality and vectorizing grid memory access. Weak scalability tests have been successfully run on the GPU-equipped Cray XC30 Piz Daint (at CSCS) up to 4,096 nodes. The reduced time-to-solution will enable more realistic and thus more computationally intensive simulations of turbulent transport in magnetic fusion devices.

  18. Numerical modelling of gravel unconstrained flow experiments with the DAN3D and RASH3D codes

    NASA Astrophysics Data System (ADS)

    Sauthier, Claire; Pirulli, Marina; Pisani, Gabriele; Scavia, Claudio; Labiouse, Vincent

    2015-12-01

    Landslide continuum dynamic models have improved considerably in the last years, but a consensus on the best method of calibrating the input resistance parameter values for predictive analyses has not yet emerged. In the present paper, numerical simulations of a series of laboratory experiments performed at the Laboratory for Rock Mechanics of the EPF Lausanne were undertaken with the RASH3D and DAN3D numerical codes. They aimed at analysing the possibility to use calibrated ranges of parameters (1) in a code different from that they were obtained from and (2) to simulate potential-events made of a material with the same characteristics as back-analysed past-events, but involving a different volume and propagation path. For this purpose, one of the four benchmark laboratory tests was used as past-event to calibrate the dynamic basal friction angle assuming a Coulomb-type behaviour of the sliding mass, and this back-analysed value was then used to simulate the three other experiments, assumed as potential-events. The computational findings show good correspondence with experimental results in terms of characteristics of the final deposits (i.e., runout, length and width). Furthermore, the obtained best fit values of the dynamic basal friction angle for the two codes turn out to be close to each other and within the range of values measured with pseudo-dynamic tilting tests.

  19. ROAR: A 3-D tethered rocket simulation code

    SciTech Connect

    York, A.R. II; Ludwigsen, J.S.

    1992-04-01

    A high-velocity impact testing technique, utilizing a tethered rocket, is being developed at Sandia National Laboratories. The technique involves tethering a rocket assembly to a pivot location and flying it in a semicircular trajectory to deliver the rocket and payload to an impact target location. Integral to developing this testing technique is the parallel development of accurate simulation models. An operational computer code, called ROAR (Rocket-on-a-Rope), has been developed to simulate the three-dimensional transient dynamic behavior of the tether and motor/payload assembly. This report presents a discussion of the parameters modeled, the governing set of equations, the through-time integration scheme, and the input required to set up a model. Also included is a sample problem and a comparison with experimental results.

  20. PEGASUS. 3D Direct Simulation Monte Carlo Code Which Solves for Geometrics

    SciTech Connect

    Bartel, T.J.

    1998-12-01

    Pegasus is a 3D Direct Simulation Monte Carlo Code which solves for geometries which can be represented by bodies of revolution. Included are all the surface chemistry enhancements in the 2D code Icarus as well as a real vacuum pump model. The code includes multiple species transport.

  1. 3D Direct Simulation Monte Carlo Code Which Solves for Geometrics

    SciTech Connect

    Bartel, Timothy J.

    1998-01-13

    Pegasus is a 3D Direct Simulation Monte Carlo Code which solves for geometries which can be represented by bodies of revolution. Included are all the surface chemistry enhancements in the 2D code Icarus as well as a real vacuum pump model. The code includes multiple species transport.

  2. EM modeling for GPIR using 3D FDTD modeling codes

    SciTech Connect

    Nelson, S.D.

    1994-10-01

    An analysis of the one-, two-, and three-dimensional electrical characteristics of structural cement and concrete is presented. This work connects experimental efforts in characterizing cement and concrete in the frequency and time domains with the Finite Difference Time Domain (FDTD) modeling efforts of these substances. These efforts include Electromagnetic (EM) modeling of simple lossless homogeneous materials with aggregate and targets and the modeling dispersive and lossy materials with aggregate and complex target geometries for Ground Penetrating Imaging Radar (GPIR). Two- and three-dimensional FDTD codes (developed at LLNL) where used for the modeling efforts. Purpose of the experimental and modeling efforts is to gain knowledge about the electrical properties of concrete typically used in the construction industry for bridges and other load bearing structures. The goal is to optimize the performance of a high-sample-rate impulse radar and data acquisition system and to design an antenna system to match the characteristics of this material. Results show agreement to within 2 dB of the amplitudes of the experimental and modeled data while the frequency peaks correlate to within 10% the differences being due to the unknown exact nature of the aggregate placement.

  3. Joint source/channel coding for prioritized wireless transmission of multiple 3-D regions of interest in 3-D medical imaging data.

    PubMed

    Sanchez, V

    2013-02-01

    This paper presents a 3-D medical image coding method featuring two major improvements to previous work on 3-D region of interest (RoI) coding for telemedicine applications. Namely, 1) a data prioritization scheme that allows coding of multiple 3-D-RoIs; and 2) a joint/source channel coding scheme that allows prioritized transmission of multiple 3-D-RoIs over wireless channels. The method, which is based on the 3-D integer wavelet transform and embedded block coding with optimized truncation with 3-D context modeling, generates scalable and error-resilient bit streams with 3-D-RoI decoding capabilities. Coding of multiple 3-D-RoIs is attained by prioritizing the wavelet-transformed data according to a Gaussian mixed distribution, whereas error resiliency is attained by employing the error correction capabilities of rate-compatible punctured turbo codes. The robustness of the proposed method is evaluated for transmission of real 3-D medical images over Rayleigh-fading channels with a priori knowledge of the channel condition. Evaluation results show that the proposed coding method provides a superior performance compared to equal error protection and unequal error protection techniques.

  4. 3-D field computation: The near-triumph of commerical codes

    SciTech Connect

    Turner, L.R.

    1995-07-01

    In recent years, more and more of those who design and analyze magnets and other devices are using commercial codes rather than developing their own. This paper considers the commercial codes and the features available with them. Other recent trends with 3-D field computation include parallel computation and visualization methods such as virtual reality systems.

  5. Lossy to lossless object-based coding of 3-D MRI data.

    PubMed

    Menegaz, Gloria; Thiran, Jean-Philippe

    2002-01-01

    We propose a fully three-dimensional (3-D) object-based coding system exploiting the diagnostic relevance of the different regions of the volumetric data for rate allocation. The data are first decorrelated via a 3-D discrete wavelet transform. The implementation via the lifting steps scheme allows to map integer-to-integer values, enabling lossless coding, and facilitates the definition of the object-based inverse transform. The coding process assigns disjoint segments of the bitstream to the different objects, which can be independently accessed and reconstructed at any up-to-lossless quality. Two fully 3-D coding strategies are considered: embedded zerotree coding (EZW-3D) and multidimensional layered zero coding (MLZC), both generalized for region of interest (ROI)-based processing. In order to avoid artifacts along region boundaries, some extra coefficients must be encoded for each object. This gives rise to an overheading of the bitstream with respect to the case where the volume is encoded as a whole. The amount of such extra information depends on both the filter length and the decomposition depth. The system is characterized on a set of head magnetic resonance images. Results show that MLZC and EZW-3D have competitive performances. In particular, the best MLZC mode outperforms the others state-of-the-art techniques on one of the datasets for which results are available in the literature.

  6. Seepage and Piping through Levees and Dikes using 2D and 3D Modeling Codes

    DTIC Science & Technology

    2016-06-01

    Modeling Codes Co as ta l a nd H yd ra ul ic s La bo ra to ry Hwai-Ping Cheng, Stephen M. England, and Clarissa M. Murray June 2016...Flood & Coastal Storm Damage Reduction Program ERDC/CHL TR-16-6 June 2016 Seepage and Piping through Levees and Dikes Using 2D and 3D Modeling Codes ...TYPE Final Report 3. DATES COVERED (From - To) 4. TITLE AND SUBTITLE Seepage and Piping through Levees and Dikes using 2D and 3D Modeling Codes

  7. 3D video coding: an overview of present and upcoming standards

    NASA Astrophysics Data System (ADS)

    Merkle, Philipp; Müller, Karsten; Wiegand, Thomas

    2010-07-01

    An overview of existing and upcoming 3D video coding standards is given. Various different 3D video formats are available, each with individual pros and cons. The 3D video formats can be separated into two classes: video-only formats (such as stereo and multiview video) and depth-enhanced formats (such as video plus depth and multiview video plus depth). Since all these formats exist of at least two video sequences and possibly additional depth data, efficient compression is essential for the success of 3D video applications and technologies. For the video-only formats the H.264 family of coding standards already provides efficient and widely established compression algorithms: H.264/AVC simulcast, H.264/AVC stereo SEI message, and H.264/MVC. For the depth-enhanced formats standardized coding algorithms are currently being developed. New and specially adapted coding approaches are necessary, as the depth or disparity information included in these formats has significantly different characteristics than video and is not displayed directly, but used for rendering. Motivated by evolving market needs, MPEG has started an activity to develop a generic 3D video standard within the 3DVC ad-hoc group. Key features of the standard are efficient and flexible compression of depth-enhanced 3D video representations and decoupling of content creation and display requirements.

  8. Numerical studies of petawatt laser-driven proton generation from two-species targets using a two-dimensional particle-in-cell code

    NASA Astrophysics Data System (ADS)

    Domański, J.; Badziak, J.; Jabloński, S.

    2016-04-01

    Laser-driven generation of high-energy ion beams has recently attracted considerable interest due to a variety of potential applications including proton radiography, ICF fast ignition, nuclear physics or hadron therapy. The ion beam parameters depend on both laser pulse and target parameters, and in order to produce the ion beam of properties required for a particular application the laser and target parameters must be carefully selected, and the mechanism of the ion beam generation should be well understood and controlled. Convenient and commonly used tools for studies of the ion acceleration process are particle-in-cell (PIC) codes. Using two-dimensional PIC simulations, the properties of a proton beam generated from a thin erbium hydride (ErH3) target irradiated by a 25fs laser pulse of linear or circular polarization and of intensity ranging from 1020 to 1021 W/cm2 are investigated and compared with the features of a proton beam produced from a hydrocarbon (CH) target. It has been found that using erbium hydride targets instead of hydrocarbon ones creates an opportunity to generate more compact proton beams of higher mean energy, intensity and of better collimation. This is especially true for the linear polarization of the laser beam, for which the mean proton energy, the amount of high energy protons and the intensity of the proton beam generated from the hydride target is by an order of magnitude higher than for the hydrocarbon target. For the circular polarization, the proton beam parameters are lower than those for the linear one, and the effect of target composition on the acceleration process is weaker.

  9. Depth-based coding of MVD data for 3D video extension of H.264/AVC

    NASA Astrophysics Data System (ADS)

    Rusanovskyy, Dmytro; Hannuksela, Miska M.; Su, Wenyi

    2013-06-01

    This paper describes a novel approach of using depth information for advanced coding of associated video data in Multiview Video plus Depth (MVD)-based 3D video systems. As a possible implementation of this conception, we describe two coding tools that have been developed for H.264/AVC based 3D Video Codec as response to Moving Picture Experts Group (MPEG) Call for Proposals (CfP). These tools are Depth-based Motion Vector Prediction (DMVP) and Backward View Synthesis Prediction (BVSP). Simulation results conducted under JCT-3V/MPEG 3DV Common Test Conditions show, that proposed in this paper tools reduce bit rate of coded video data by 15% of average delta bit rate reduction, which results in 13% of bit rate savings on total for the MVD data over the state-of-the-art MVC+D coding. Moreover, presented in this paper conception of depth-based coding of video has been further developed by MPEG 3DV and JCT-3V and this work resulted in even higher compression efficiency, bringing about 20% of delta bit rate reduction on total for coded MVD data over the reference MVC+D coding. Considering significant gains, proposed in this paper coding approach can be beneficial for development of new 3D video coding standards. [Figure not available: see fulltext.

  10. Edge-based intramode selection for depth-map coding in 3D-HEVC.

    PubMed

    Park, Chun-Su

    2015-01-01

    The 3D video extension of High Efficiency Video Coding (3D-HEVC) is the state-of-the-art video coding standard for the compression of the multiview video plus depth format. In the 3D-HEVC design, new depth-modeling modes (DMMs) are utilized together with the existing intraprediction modes for depth intracoding. The DMMs can provide more accurate prediction signals and thereby achieve better compression efficiency. However, testing the DMMs in the intramode decision process causes a drastic increase in the computational complexity. In this paper, we propose a fast mode decision algorithm for depth intracoding. The proposed algorithm first performs a simple edge classification in the Hadamard transform domain. Then, based on the edge classification results, the proposed algorithm selectively omits unnecessary DMMs in the mode decision process. Experimental results demonstrate that the proposed algorithm speeds up the mode decision process by up to 37.65% with negligible loss of coding efficiency.

  11. Multitasking the INS3D-LU code on the Cray Y-MP

    NASA Technical Reports Server (NTRS)

    Fatoohi, Rod; Yoon, Seokkwan

    1991-01-01

    This paper presents the results of multitasking the INS3D-LU code on eight processors. The code is a full Navier-Stokes solver for incompressible fluid in three dimensional generalized coordinates using a lower-upper symmetric-Gauss-Seidel implicit scheme. This code has been fully vectorized on oblique planes of sweep and parallelized using autotasking with some directives and minor modifications. The timing results for five grid sizes are presented and analyzed. The code has achieved a processing rate of over one Gflops.

  12. Impact of packet losses in scalable 3D holoscopic video coding

    NASA Astrophysics Data System (ADS)

    Conti, Caroline; Nunes, Paulo; Ducla Soares, Luís.

    2014-05-01

    Holoscopic imaging became a prospective glassless 3D technology to provide more natural 3D viewing experiences to the end user. Additionally, holoscopic systems also allow new post-production degrees of freedom, such as controlling the plane of focus or the viewing angle presented to the user. However, to successfully introduce this technology into the consumer market, a display scalable coding approach is essential to achieve backward compatibility with legacy 2D and 3D displays. Moreover, to effectively transmit 3D holoscopic content over error-prone networks, e.g., wireless networks or the Internet, error resilience techniques are required to mitigate the impact of data impairments in the user quality perception. Therefore, it is essential to deeply understand the impact of packet losses in terms of decoding video quality for the specific case of 3D holoscopic content, notably when a scalable approach is used. In this context, this paper studies the impact of packet losses when using a three-layer display scalable 3D holoscopic video coding architecture previously proposed, where each layer represents a different level of display scalability (i.e., L0 - 2D, L1 - stereo or multiview, and L2 - full 3D holoscopic). For this, a simple error concealment algorithm is used, which makes use of inter-layer redundancy between multiview and 3D holoscopic content and the inherent correlation of the 3D holoscopic content to estimate lost data. Furthermore, a study of the influence of 2D views generation parameters used in lower layers on the performance of the used error concealment algorithm is also presented.

  13. Transport analysis in toroidal helical plasmas using the integrated code: TASK3D

    NASA Astrophysics Data System (ADS)

    Wakasa, A.; Fukuyama, A.; Murakami, S.; Beidler, C. D.; Maassberg, H.; Yokoyama, M.; Sato, M.

    2009-11-01

    The integrated simulation code in helical plasmas, TASK3D, is being developed on the basis of an integrated modeling code for tokamak plasma, TASK. In helical systems, the neoclassical transport is one of the important issues in addition to the anomalous transport, because of strong temperature dependence of heat conductivity and an important role in determining the radial electric field. We have already constructed the neoclassical transport database in LHD, DGN/LHD. The mono-energetic diffusion coefficients are evaluated based on the Monte Carlo method by DCOM code and the mono-energetic diffusion coefficients database is constructed using a neural network technique. Also we apply GSRAKE code, which solves the ripple-averaged drift kinetic equation, to obtain transport coefficients in highly collisionless regime. We have newly incorporated the DGN/LHD module into TASK3D. We will present several results of transport simulation in typical LHD plasmas.

  14. 3D Neutron Transport PWR Full-core Calculation with RMC code

    NASA Astrophysics Data System (ADS)

    Qiu, Yishu; She, Ding; Fan, Xiao; Wang, Kan; Li, Zeguang; Liang, Jingang; Leroyer, Hadrien

    2014-06-01

    Nowadays, there are more and more interests in the use of Monte Carlo codes to calculate the detailed power density distributions in full-core reactors. With the Inspur TS1000 HPC Server of Tsinghua University, several calculations have been done based on the EDF 3D Neutron Transport PWR Full-core benchmark through large-scale parallelism. To investigate and compare the results of the deterministic method and Monte Carlo method, EDF R&D and Department of Engineering Physics of Tsinghua University are having a collaboration to make code to code verification. So in this paper, two codes are used. One is the code COCAGNE developed by the EDF R&D, a deterministic core code, and the other is the Monte Carlo code RMC developed by Department of Engineering Physics in Tsinghua University. First, the full-core model is described and a 26-group calculation was performed by these two codes using the same 26-group cross-section library provided by EDF R&D. Then the parallel and tally performance of RMC is discussed. RMC employs a novel algorithm which can cut down most of the communications. It can be seen clearly that the speedup ratio almost linearly increases with the nodes. Furthermore the cell-mapping method applied by RMC consumes little time to tally even millions of cells. The results of the codes COCAGNE and RMC are compared in three ways. The results of these two codes agree well with each other. It can be concluded that both COCAGNE and RMC are able to provide 3D-transport solutions associated with detailed power density distributions calculation in PWR full-core reactors. Finally, to investigate how many histories are needed to obtain a given standard deviation for a full 3D solution, the non-symmetrized condensed 2-group fluxes of RMC are discussed.

  15. Turbomachinery Heat Transfer and Loss Modeling for 3D Navier-Stokes Codes

    NASA Technical Reports Server (NTRS)

    DeWitt, Kenneth; Ameri, Ali

    2005-01-01

    This report's contents focus on making use of NASA Glenn on-site computational facilities,to develop, validate, and apply models for use in advanced 3D Navier-Stokes Computational Fluid Dynamics (CFD) codes to enhance the capability to compute heat transfer and losses in turbomachiney.

  16. Users manual for the NASA Lewis three-dimensional ice accretion code (LEWICE 3D)

    NASA Technical Reports Server (NTRS)

    Bidwell, Colin S.; Potapczuk, Mark G.

    1993-01-01

    A description of the methodology, the algorithms, and the input and output data along with an example case for the NASA Lewis 3D ice accretion code (LEWICE3D) has been produced. The manual has been designed to help the user understand the capabilities, the methodologies, and the use of the code. The LEWICE3D code is a conglomeration of several codes for the purpose of calculating ice shapes on three-dimensional external surfaces. A three-dimensional external flow panel code is incorporated which has the capability of calculating flow about arbitrary 3D lifting and nonlifting bodies with external flow. A fourth order Runge-Kutta integration scheme is used to calculate arbitrary streamlines. An Adams type predictor-corrector trajectory integration scheme has been included to calculate arbitrary trajectories. Schemes for calculating tangent trajectories, collection efficiencies, and concentration factors for arbitrary regions of interest for single droplets or droplet distributions have been incorporated. A LEWICE 2D based heat transfer algorithm can be used to calculate ice accretions along surface streamlines. A geometry modification scheme is incorporated which calculates the new geometry based on the ice accretions generated at each section of interest. The three-dimensional ice accretion calculation is based on the LEWICE 2D calculation. Both codes calculate the flow, pressure distribution, and collection efficiency distribution along surface streamlines. For both codes the heat transfer calculation is divided into two regions, one above the stagnation point and one below the stagnation point, and solved for each region assuming a flat plate with pressure distribution. Water is assumed to follow the surface streamlines, hence starting at the stagnation zone any water that is not frozen out at a control volume is assumed to run back into the next control volume. After the amount of frozen water at each control volume has been calculated the geometry is modified by

  17. Implementation of a kappa-epsilon turbulence model to RPLUS3D code

    NASA Technical Reports Server (NTRS)

    Chitsomboon, Tawit

    1992-01-01

    The RPLUS3D code has been developed at the NASA Lewis Research Center to support the National Aerospace Plane (NASP) project. The code has the ability to solve three dimensional flowfields with finite rate combustion of hydrogen and air. The combustion process of the hydrogen-air system are simulated by an 18 reaction path, 8 species chemical kinetic mechanism. The code uses a Lower-Upper (LU) decomposition numerical algorithm as its basis, making it a very efficient and robust code. Except for the Jacobian matrix for the implicit chemistry source terms, there is no inversion of a matrix even though a fully implicit numerical algorithm is used. A k-epsilon turbulence model has recently been incorporated into the code. Initial validations have been conducted for a flow over a flat plate. Results of the validation studies are shown. Some difficulties in implementing the k-epsilon equations to the code are also discussed.

  18. Proceeding On : Parallelisation Of Critical Code Passages In PHOENIX/3D

    NASA Astrophysics Data System (ADS)

    Arkenberg, Mario; Wichert, Viktoria; Hauschildt, Peter H.

    2016-10-01

    Highly resolved state-of-the-art 3D atmosphere simulations will remain computationally extremely expensive for years to come. In addition to the need for more computing power, rethinking coding practices is necessary. We take a dual approach here, by introducing especially adapted, parallel numerical methods and correspondingly parallelising time critical code passages. In the following, we present our work on PHOENIX/3D.While parallelisation is generally worthwhile, it requires revision of time-consuming subroutines with respect to separability of localised data and variables in order to determine the optimal approach. Of course, the same applies to the code structure. The importance of this ongoing work can be showcased by recently derived benchmark results, which were generated utilis- ing MPI and OpenMP. Furthermore, the need for a careful and thorough choice of an adequate, machine dependent setup is discussed.

  19. RELAP5-3D Code Includes Athena Features and Models

    SciTech Connect

    Richard A. Riemke; Cliff B. Davis; Richard R. Schultz

    2006-07-01

    Version 2.3 of the RELAP5-3D computer program includes all features and models previously available only in the ATHENA version of the code. These include the addition of new working fluids (i.e., ammonia, blood, carbon dioxide, glycerol, helium, hydrogen, lead-bismuth, lithium, lithium-lead, nitrogen, potassium, sodium, and sodium-potassium) and a magnetohydrodynamic model that expands the capability of the code to model many more thermal-hydraulic systems. In addition to the new working fluids along with the standard working fluid water, one or more noncondensable gases (e.g., air, argon, carbon dioxide, carbon monoxide, helium, hydrogen, krypton, nitrogen, oxygen, sf6, xenon) can be specified as part of the vapor/gas phase of the working fluid. These noncondensable gases were in previous versions of RELAP5- 3D. Recently four molten salts have been added as working fluids to RELAP5-3D Version 2.4, which has had limited release. These molten salts will be in RELAP5-3D Version 2.5, which will have a general release like RELAP5-3D Version 2.3. Applications that use these new features and models are discussed in this paper.

  20. Development of Unsteady Aerodynamic and Aeroelastic Reduced-Order Models Using the FUN3D Code

    NASA Technical Reports Server (NTRS)

    Silva, Walter A.; Vatsa, Veer N.; Biedron, Robert T.

    2009-01-01

    Recent significant improvements to the development of CFD-based unsteady aerodynamic reduced-order models (ROMs) are implemented into the FUN3D unstructured flow solver. These improvements include the simultaneous excitation of the structural modes of the CFD-based unsteady aerodynamic system via a single CFD solution, minimization of the error between the full CFD and the ROM unsteady aero- dynamic solution, and computation of a root locus plot of the aeroelastic ROM. Results are presented for a viscous version of the two-dimensional Benchmark Active Controls Technology (BACT) model and an inviscid version of the AGARD 445.6 aeroelastic wing using the FUN3D code.

  1. Turbine Internal and Film Cooling Modeling For 3D Navier-Stokes Codes

    NASA Technical Reports Server (NTRS)

    DeWitt, Kenneth; Garg Vijay; Ameri, Ali

    2005-01-01

    The aim of this research project is to make use of NASA Glenn on-site computational facilities in order to develop, validate and apply aerodynamic, heat transfer, and turbine cooling models for use in advanced 3D Navier-Stokes Computational Fluid Dynamics (CFD) codes such as the Glenn-" code. Specific areas of effort include: Application of the Glenn-HT code to specific configurations made available under Turbine Based Combined Cycle (TBCC), and Ultra Efficient Engine Technology (UEET) projects. Validating the use of a multi-block code for the time accurate computation of the detailed flow and heat transfer of cooled turbine airfoils. The goal of the current research is to improve the predictive ability of the Glenn-HT code. This will enable one to design more efficient turbine components for both aviation and power generation. The models will be tested against specific configurations provided by NASA Glenn.

  2. Object-adaptive depth compensated inter prediction for depth video coding in 3D video system

    NASA Astrophysics Data System (ADS)

    Kang, Min-Koo; Lee, Jaejoon; Lim, Ilsoon; Ho, Yo-Sung

    2011-01-01

    Nowadays, the 3D video system using the MVD (multi-view video plus depth) data format is being actively studied. The system has many advantages with respect to virtual view synthesis such as an auto-stereoscopic functionality, but compression of huge input data remains a problem. Therefore, efficient 3D data compression is extremely important in the system, and problems of low temporal consistency and viewpoint correlation should be resolved for efficient depth video coding. In this paper, we propose an object-adaptive depth compensated inter prediction method to resolve the problems where object-adaptive mean-depth difference between a current block, to be coded, and a reference block are compensated during inter prediction. In addition, unique properties of depth video are exploited to reduce side information required for signaling decoder to conduct the same process. To evaluate the coding performance, we have implemented the proposed method into MVC (multiview video coding) reference software, JMVC 8.2. Experimental results have demonstrated that our proposed method is especially efficient for depth videos estimated by DERS (depth estimation reference software) discussed in the MPEG 3DV coding group. The coding gain was up to 11.69% bit-saving, and it was even increased when we evaluated it on synthesized views of virtual viewpoints.

  3. Assessing the performance of a parallel MATLAB-based 3D convection code

    NASA Astrophysics Data System (ADS)

    Kirkpatrick, G. J.; Hasenclever, J.; Phipps Morgan, J.; Shi, C.

    2008-12-01

    We are currently building 2D and 3D MATLAB-based parallel finite element codes for mantle convection and melting. The codes use the MATLAB implementation of core MPI commands (eg. Send, Receive, Broadcast) for message passing between computational subdomains. We have found that code development and algorithm testing are much faster in MATLAB than in our previous work coding in C or FORTRAN, this code was built from scratch with only 12 man-months of effort. The one extra cost w.r.t. C coding on a Beowulf cluster is the cost of the parallel MATLAB license for a >4core cluster. Here we present some preliminary results on the efficiency of MPI messaging in MATLAB on a small 4 machine, 16core, 32Gb RAM Intel Q6600 processor-based cluster. Our code implements fully parallelized preconditioned conjugate gradients with a multigrid preconditioner. Our parallel viscous flow solver is currently 20% slower for a 1,000,000 DOF problem on a single core in 2D as the direct solve MILAMIN MATLAB viscous flow solver. We have tested both continuous and discontinuous pressure formulations. We test with various configurations of network hardware, CPU speeds, and memory using our own and MATLAB's built in cluster profiler. So far we have only explored relatively small (up to 1.6GB RAM) test problems. We find that with our current code and Intel memory controller bandwidth limitations we can only get ~2.3 times performance out of 4 cores than 1 core per machine. Even for these small problems the code runs faster with message passing between 4 machines with one core each than 1 machine with 4 cores and internal messaging (1.29x slower), or 1 core (2.15x slower). It surprised us that for 2D ~1GB-sized problems with only 3 multigrid levels, the direct- solve on the coarsest mesh consumes comparable time to the iterative solve on the finest mesh - a penalty that is greatly reduced either by using a 4th multigrid level or by using an iterative solve at the coarsest grid level. We plan to

  4. Equation-of-State Test Suite for the DYNA3D Code

    SciTech Connect

    Benjamin, Russell D.

    2015-11-05

    This document describes the creation and implementation of a test suite for the Equationof- State models in the DYNA3D code. A customized input deck has been created for each model, as well as a script that extracts the relevant data from the high-speed edit file created by DYNA3D. Each equation-of-state model is broken apart and individual elements of the model are tested, as well as testing the entire model. The input deck for each model is described and the results of the tests are discussed. The intent of this work is to add this test suite to the validation suite presently used for DYNA3D.

  5. Peach Bottom 2 Turbine Trip Simulation Using TRAC-BF1/COS3D, a Best-Estimate Coupled 3-D Core and Thermal-Hydraulic Code System

    SciTech Connect

    Ui, Atsushi; Miyaji, Takamasa

    2004-10-15

    The best-estimate coupled three-dimensional (3-D) core and thermal-hydraulic code system TRAC-BF1/COS3D has been developed. COS3D, based on a modified one-group neutronic model, is a 3-D core simulator used for licensing analyses and core management of commercial boiling water reactor (BWR) plants in Japan. TRAC-BF1 is a plant simulator based on a two-fluid model. TRAC-BF1/COS3D is a coupled system of both codes, which are connected using a parallel computing tool. This code system was applied to the OECD/NRC BWR Turbine Trip Benchmark. Since the two-group cross-section tables are provided by the benchmark team, COS3D was modified to apply to this specification. Three best-estimate scenarios and four hypothetical scenarios were calculated using this code system. In the best-estimate scenario, the predicted core power with TRAC-BF1/COS3D is slightly underestimated compared with the measured data. The reason seems to be a slight difference in the core boundary conditions, that is, pressure changes and the core inlet flow distribution, because the peak in this analysis is sensitive to them. However, the results of this benchmark analysis show that TRAC-BF1/COS3D gives good precision for the prediction of the actual BWR transient behavior on the whole. Furthermore, the results with the modified one-group model and the two-group model were compared to verify the application of the modified one-group model to this benchmark. This comparison shows that the results of the modified one-group model are appropriate and sufficiently precise.

  6. IM3D: A parallel Monte Carlo code for efficient simulations of primary radiation displacements and damage in 3D geometry

    PubMed Central

    Li, Yong Gang; Yang, Yang; Short, Michael P.; Ding, Ze Jun; Zeng, Zhi; Li, Ju

    2015-01-01

    SRIM-like codes have limitations in describing general 3D geometries, for modeling radiation displacements and damage in nanostructured materials. A universal, computationally efficient and massively parallel 3D Monte Carlo code, IM3D, has been developed with excellent parallel scaling performance. IM3D is based on fast indexing of scattering integrals and the SRIM stopping power database, and allows the user a choice of Constructive Solid Geometry (CSG) or Finite Element Triangle Mesh (FETM) method for constructing 3D shapes and microstructures. For 2D films and multilayers, IM3D perfectly reproduces SRIM results, and can be ∼102 times faster in serial execution and > 104 times faster using parallel computation. For 3D problems, it provides a fast approach for analyzing the spatial distributions of primary displacements and defect generation under ion irradiation. Herein we also provide a detailed discussion of our open-source collision cascade physics engine, revealing the true meaning and limitations of the “Quick Kinchin-Pease” and “Full Cascades” options. The issues of femtosecond to picosecond timescales in defining displacement versus damage, the limitation of the displacements per atom (DPA) unit in quantifying radiation damage (such as inadequacy in quantifying degree of chemical mixing), are discussed. PMID:26658477

  7. A hybrid kinetic hot ion PIC module for the M3D-C1 Code

    NASA Astrophysics Data System (ADS)

    Breslau, J. A.; Ferraro, N.; Jardin, S. C.; Kalyanaraman, K.

    2016-10-01

    Building on the success of the original M3D code with the addition of efficient high-order, high-continuity finite elements and a fully implicit time advance making use of cutting-edge numerical techniques, M3D-C1 has become a flagship code for realistic time-dependent 3D MHD and two-fluid calculations of the nonlinear evolution of macroinstabilities in tokamak plasmas. It is therefore highly desirable to introduce to M3D-C1 one of the most-used features of its predecessor: the option to use a drift-kinetic delta- f PIC model for a minority population of energetic ions (representing, e.g., beam ions or fusion alpha particles) coupled with the usual finite element advance of the bulk ion and electron fluids through its pressure tensor. We describe the implementation of a module for this purpose using high-order-of-accuracy numerical integration and carefully tuned to take advantage of state-of-the-art multicore processing elements. Verification results for a toroidal Alfvén eigenmode test problem will be presented, along with a demonstration of favorable parallel scaling to large numbers of supercomputer nodes.

  8. Progress on accelerated calculation of 3D MHD equilibrium with the PIES code

    NASA Astrophysics Data System (ADS)

    Raburn, Daniel; Reiman, Allan; Monticello, Donald

    2016-10-01

    Continuing progress has been made in accelerating the 3D MHD equilibrium code, PIES, using an external numerical wrapper. The PIES code (Princeton Iterative Equilibrium Solver) is capable of calculating 3D MHD equilibria with islands. The numerical wrapper has been demonstrated to greatly improve the rate of convergence in numerous cases corresponding to equilibria in the TFTR device where magnetic islands are present; the numerical wrapper makes use of a Jacobian-free Newton-Krylov solver along with adaptive preconditioning and a sophisticated subspace-restricted Levenberg backtracking algorithm. The wrapper has recently been improved by automation which combines the preexisting backtracking algorithm with insights gained from the stability of the Picard algorithm traditionally used with PIES. Improved progress logging and stopping criteria have also been incorporated in to the numerical wrapper.

  9. Voxel-coding method for quantification of vascular structure from 3D images

    NASA Astrophysics Data System (ADS)

    Soltanian-Zadeh, Hamid; Shahrokni, Ali; Zoroofi, Reza A.

    2001-05-01

    This paper presents an image processing method for information extraction from 3D images of vasculature. It automates the study of vascular structures by extracting quantitative information such as skeleton, length, diameter, and vessel-to- tissue ratio for different vessels as well as their branches. Furthermore, it generates 3D visualization of vessels based on desired anatomical characteristics such as vessel diameter or 3D connectivity. Steps of the proposed approach are as follows. (1) Preprocessing, in which intensity adjustment, optimal thresholding, and median filtering are done. (2) 3D thinning, in which medial axis and skeleton of the vessels are found. (3) Branch labeling, in which different branches are identified and each voxel is assigned to the corresponding branch. (4) Quantitation, in which length of each branch is estimated, based on the number of voxels assigned to it, and its diameter is calculated using the medial axis direction. (5) Visualization, in which vascular structure is shown in 3D, using color coding and surface rendering methods. We have tested and evaluated the proposed algorithms using simulated images of multi-branch vessels and real confocal microscopic images of the vessels in rat brains. Experimental results illustrate performance of the methods and usefulness of the results for medical image analysis applications.

  10. Analysis of the beam halo in negative ion sources by using 3D3V PIC code.

    PubMed

    Miyamoto, K; Nishioka, S; Goto, I; Hatayama, A; Hanada, M; Kojima, A; Hiratsuka, J

    2016-02-01

    The physical mechanism of the formation of the negative ion beam halo and the heat loads of the multi-stage acceleration grids are investigated with the 3D PIC (particle in cell) simulation. The following physical mechanism of the beam halo formation is verified: The beam core and the halo consist of the negative ions extracted from the center and the periphery of the meniscus, respectively. This difference of negative ion extraction location results in a geometrical aberration. Furthermore, it is shown that the heat loads on the first acceleration grid and the second acceleration grid are quantitatively improved compared with those for the 2D PIC simulation result.

  11. Analysis of the beam halo in negative ion sources by using 3D3V PIC code

    SciTech Connect

    Miyamoto, K.; Nishioka, S.; Goto, I.; Hatayama, A.; Hanada, M.; Kojima, A.; Hiratsuka, J.

    2016-02-15

    The physical mechanism of the formation of the negative ion beam halo and the heat loads of the multi-stage acceleration grids are investigated with the 3D PIC (particle in cell) simulation. The following physical mechanism of the beam halo formation is verified: The beam core and the halo consist of the negative ions extracted from the center and the periphery of the meniscus, respectively. This difference of negative ion extraction location results in a geometrical aberration. Furthermore, it is shown that the heat loads on the first acceleration grid and the second acceleration grid are quantitatively improved compared with those for the 2D PIC simulation result.

  12. User Guide for the R5EXEC Coupling Interface in the RELAP5-3D Code

    SciTech Connect

    Forsmann, J. Hope; Weaver, Walter L.

    2015-04-01

    This report describes the R5EXEC coupling interface in the RELAP5-3D computer code from the users perspective. The information in the report is intended for users who want to couple RELAP5-3D to other thermal-hydraulic, neutron kinetics, or control system simulation codes.

  13. The Transient 3-D Transport Coupled Code TORT-TD/ATTICA3D for High-Fidelity Pebble-Bed HTGR Analyses

    NASA Astrophysics Data System (ADS)

    Seubert, Armin; Sureda, Antonio; Lapins, Janis; Bader, Johannes; Laurien, Eckart

    2012-01-01

    This article describes the 3D discrete ordinates-based coupled code system TORT-TD/ATTICA3D that aims at steady state and transient analyses of pebble-bed high-temperature gas cooled reactors. In view of increasing computing power, the application of time-dependent neutron transport methods becomes feasible for best estimate evaluations of safety margins. The calculation capabilities of TORT-TD/ATTICA3D are presented along with the coupling approach, with focus on the time-dependent neutron transport features of TORT-TD. Results obtained for the OECD/NEA/NSC PBMR-400 benchmark demonstrate the transient capabilities of TORT-TD/ATTICA3D.

  14. Methods used in WARP3d, a three-dimensional PIC/accelerator code

    SciTech Connect

    Grote, D.P.; Friedman, A.; Haber, I.

    1997-02-28

    WARP-3d(1,2), a three-dimensional PIC/accelerator code, has been developed over several years and has played a major role in the design and analysis of space-charge dominated beam experiments being carried out by the heavy-ion fusion programs at LLNL and LBNL. Major features of the code will be reviewed, including: residence corrections which allow large timesteps to be taken, electrostatic field solution with subgrid scale resolution of internal conductor boundaries, and a beat beam algorithm. Emphasis will be placed on new features and capabilities of the code, which include: a port to parallel processing environments, space-charge limited injection, and the linking of runs covering different sections of an accelerator. Representative applications in which the new features and capabilities are used will be presented along with the important results.

  15. The future of 3D and video coding in mobile and the internet

    NASA Astrophysics Data System (ADS)

    Bivolarski, Lazar

    2013-09-01

    The current Internet success has already changed our social and economic world and is still continuing to revolutionize the information exchange. The exponential increase of amount and types of data that is currently exchanged on the Internet represents significant challenge for the design of future architectures and solutions. This paper reviews the current status and trends in the design of solutions and research activities in the future Internet from point of view of managing the growth of bandwidth requirements and complexity of the multimedia that is being created and shared. Outlines the challenges that are present before the video coding and approaches to the design of standardized media formats and protocols while considering the expected convergence of multimedia formats and exchange interfaces. The rapid growth of connected mobile devices adds to the current and the future challenges in combination with the expected, in near future, arrival of multitude of connected devices. The new Internet technologies connecting the Internet of Things with wireless visual sensor networks and 3D virtual worlds requires conceptually new approaches of media content handling from acquisition to presentation in the 3D Media Internet. Accounting for the entire transmission system properties and enabling adaptation in real-time to context and content throughout the media proceeding path will be paramount in enabling the new media architectures as well as the new applications and services. The common video coding formats will need to be conceptually redesigned to allow for the implementation of the necessary 3D Media Internet features.

  16. Representation and coding of large-scale 3D dynamic maps

    NASA Astrophysics Data System (ADS)

    Cohen, Robert A.; Tian, Dong; Krivokuća, Maja; Sugimoto, Kazuo; Vetro, Anthony; Wakimoto, Koji; Sekiguchi, Shunichi

    2016-09-01

    combined with depth and color measurements of the surrounding environment. Localization could be achieved with GPS, inertial measurement units (IMU), cameras, or combinations of these and other devices, while the depth measurements could be achieved with time-of-flight, radar or laser scanning systems. The resulting 3D maps, which are composed of 3D point clouds with various attributes, could be used for a variety of applications, including finding your way around indoor spaces, navigating vehicles around a city, space planning, topographical surveying or public surveying of infrastructure and roads, augmented reality, immersive online experiences, and much more. This paper discusses application requirements related to the representation and coding of large-scale 3D dynamic maps. In particular, we address requirements related to different types of acquisition environments, scalability in terms of progressive transmission and efficiently rendering different levels of details, as well as key attributes to be included in the representation. Additionally, an overview of recently developed coding techniques is presented, including an assessment of current performance. Finally, technical challenges and needs for future standardization are discussed.

  17. PRONTO3D users` instructions: A transient dynamic code for nonlinear structural analysis

    SciTech Connect

    Attaway, S.W.; Mello, F.J.; Heinstein, M.W.; Swegle, J.W.; Ratner, J.A.; Zadoks, R.I.

    1998-06-01

    This report provides an updated set of users` instructions for PRONTO3D. PRONTO3D is a three-dimensional, transient, solid dynamics code for analyzing large deformations of highly nonlinear materials subjected to extremely high strain rates. This Lagrangian finite element program uses an explicit time integration operator to integrate the equations of motion. Eight-node, uniform strain, hexahedral elements and four-node, quadrilateral, uniform strain shells are used in the finite element formulation. An adaptive time step control algorithm is used to improve stability and performance in plasticity problems. Hourglass distortions can be eliminated without disturbing the finite element solution using either the Flanagan-Belytschko hourglass control scheme or an assumed strain hourglass control scheme. All constitutive models in PRONTO3D are cast in an unrotated configuration defined using the rotation determined from the polar decomposition of the deformation gradient. A robust contact algorithm allows for the impact and interaction of deforming contact surfaces of quite general geometry. The Smooth Particle Hydrodynamics method has been embedded into PRONTO3D using the contact algorithm to couple it with the finite element method.

  18. FURN3D: A computer code for radiative heat transfer in pulverized coal furnaces

    SciTech Connect

    Ahluwalia, R.K.; Im, K.H.

    1992-08-01

    A computer code FURN3D has been developed for assessing the impact of burning different coals on heat absorption pattern in pulverized coal furnaces. The code is unique in its ability to conduct detailed spectral calculations of radiation transport in furnaces fully accounting for the size distributions of char, soot and ash particles, ash content, and ash composition. The code uses a hybrid technique of solving the three-dimensional radiation transport equation for absorbing, emitting and anisotropically scattering media. The technique achieves an optimal mix of computational speed and accuracy by combining the discrete ordinate method (S[sub 4]), modified differential approximation (MDA) and P, approximation in different range of optical thicknesses. The code uses spectroscopic data for estimating the absorption coefficients of participating gases C0[sub 2], H[sub 2]0 and CO. It invokes Mie theory for determining the extinction and scattering coefficients of combustion particulates. The optical constants of char, soot and ash are obtained from dispersion relations derived from reflectivity, transmissivity and extinction measurements. A control-volume formulation is adopted for determining the temperature field inside the furnace. A simple char burnout model is employed for estimating heat release and evolution of particle size distribution. The code is written in Fortran 77, has modular form, and is machine-independent. The computer memory required by the code depends upon the number of grid points specified and whether the transport calculations are performed on spectral or gray basis.

  19. FURN3D: A computer code for radiative heat transfer in pulverized coal furnaces

    SciTech Connect

    Ahluwalia, R.K.; Im, K.H.

    1992-08-01

    A computer code FURN3D has been developed for assessing the impact of burning different coals on heat absorption pattern in pulverized coal furnaces. The code is unique in its ability to conduct detailed spectral calculations of radiation transport in furnaces fully accounting for the size distributions of char, soot and ash particles, ash content, and ash composition. The code uses a hybrid technique of solving the three-dimensional radiation transport equation for absorbing, emitting and anisotropically scattering media. The technique achieves an optimal mix of computational speed and accuracy by combining the discrete ordinate method (S{sub 4}), modified differential approximation (MDA) and P, approximation in different range of optical thicknesses. The code uses spectroscopic data for estimating the absorption coefficients of participating gases C0{sub 2}, H{sub 2}0 and CO. It invokes Mie theory for determining the extinction and scattering coefficients of combustion particulates. The optical constants of char, soot and ash are obtained from dispersion relations derived from reflectivity, transmissivity and extinction measurements. A control-volume formulation is adopted for determining the temperature field inside the furnace. A simple char burnout model is employed for estimating heat release and evolution of particle size distribution. The code is written in Fortran 77, has modular form, and is machine-independent. The computer memory required by the code depends upon the number of grid points specified and whether the transport calculations are performed on spectral or gray basis.

  20. Depth map coding using residual segmentation for 3D video system

    NASA Astrophysics Data System (ADS)

    Lee, Cheon; Ho, Yo-Sung

    2013-06-01

    Advanced 3D video systems employ multi-view video-plus-depth data to support the free-viewpoint navigation and comfortable 3D viewing; thus efficient depth map coding becomes an important issue. Unlike the color image, the depth map has a property that depth values of the inner part of an object are monotonic, but those of object boundaries change abruptly. Therefore, residual data generated by prediction errors around object boundaries consume many bits in depth map coding. Representing them with segment data can be better than the use of the conventional transformation around the boundary regions. In this paper, we propose an efficient depth map coding method using a residual segmentation instead of using transformation. The proposed residual segmentation divides residual data into two regions with a segment map and two mean values. If the encoder selects the proposed method in terms of rates, two quantized mean values and an index of the segment map are transmitted. Simulation results show significant gains of up to 10 dB compared to the state-of-the-art coders, such as JPEG2000 and H.264/AVC. [Figure not available: see fulltext.

  1. 3-D localization of gamma ray sources with coded apertures for medical applications

    NASA Astrophysics Data System (ADS)

    Kaissas, I.; Papadimitropoulos, C.; Karafasoulis, K.; Potiriadis, C.; Lambropoulos, C. P.

    2015-09-01

    Several small gamma cameras for radioguided surgery using CdTe or CdZnTe have parallel or pinhole collimators. Coded aperture imaging is a well-known method for gamma ray source directional identification, applied in astrophysics mainly. The increase in efficiency due to the substitution of the collimators by the coded masks renders the method attractive for gamma probes used in radioguided surgery. We have constructed and operationally verified a setup consisting of two CdTe gamma cameras with Modified Uniform Redundant Array (MURA) coded aperture masks of rank 7 and 19 and a video camera. The 3-D position of point-like radioactive sources is estimated via triangulation using decoded images acquired by the gamma cameras. We have also developed code for both fast and detailed simulations and we have verified the agreement between experimental results and simulations. In this paper we present a simulation study for the spatial localization of two point sources using coded aperture masks with rank 7 and 19.

  2. Newly-Developed 3D GRMHD Code and its Application to Jet Formation

    NASA Technical Reports Server (NTRS)

    Mizuno, Y.; Nishikawa, K.-I.; Koide, S.; Hardee, P.; Fishman, G. J.

    2006-01-01

    We have developed a new three-dimensional general relativistic magnetohydrodynamic code by using a conservative, high-resolution shock-capturing scheme. The numerical fluxes are calculated using the HLL approximate Riemann solver scheme. The flux-interpolated constrained transport scheme is used to maintain a divergence-free magnetic field. We have performed various 1-dimensional test problems in both special and general relativity by using several reconstruction methods and found that the new 3D GRMHD code shows substantial improvements over our previous model. The . preliminary results show the jet formations from a geometrically thin accretion disk near a non-rotating and a rotating black hole. We will discuss the jet properties depended on the rotation of a black hole and the magnetic field strength.

  3. Implementation of the 3D edge plasma code EMC3-EIRENE on NSTX

    DOE PAGES

    Lore, J. D.; Canik, J. M.; Feng, Y.; ...

    2012-05-09

    The 3D edge transport code EMC3-EIRENE has been applied for the first time to the NSTX spherical tokamak. A new disconnected double null grid has been developed to allow the simulation of plasma where the radial separation of the inner and outer separatrix is less than characteristic widths (e.g. heat flux width) at the midplane. Modelling results are presented for both an axisymmetric case and a case where 3D magnetic field is applied in an n = 3 configuration. In the vacuum approximation, the perturbed field consists of a wide region of destroyed flux surfaces and helical lobes which aremore » a mixture of long and short connection length field lines formed by the separatrix manifolds. This structure is reflected in coupled 3D plasma fluid (EMC3) and kinetic neutral particle (EIRENE) simulations. The helical lobes extending inside of the unperturbed separatrix are filled in by hot plasma from the core. The intersection of the lobes with the divertor results in a striated flux footprint pattern on the target plates. As a result, profiles of divertor heat and particle fluxes are compared with experimental data, and possible sources of discrepancy are discussed.« less

  4. Recent Developments in the VISRAD 3-D Target Design and Radiation Simulation Code

    NASA Astrophysics Data System (ADS)

    Macfarlane, Joseph; Woodruff, P.; Golovkin, I.

    2011-10-01

    The 3-D view factor code VISRAD is widely used in designing HEDP experiments at major laser and pulsed-power facilities, including NIF, OMEGA, OMEGA-EP, ORION, Z, and PLX. It simulates target designs by generating a 3-D grid of surface elements, utilizing a variety of 3-D primitives and surface removal algorithms, and can be used to compute the radiation flux throughout the surface element grid by computing element-to-element view factors and solving power balance equations. Target set-up and beam pointing are facilitated by allowing users to specify positions and angular orientations using a variety of coordinates systems (e . g . , that of any laser beam, target component, or diagnostic port). Analytic modeling for laser beam spatial profiles for OMEGA DPPs and NIF CPPs is used to compute laser intensity profiles throughout the grid of surface elements. VISRAD includes a variety of user-friendly graphics for setting up targets and displaying results, can readily display views from any point in space, and can be used to generate image sequences for animations. We will discuss recent improvements to the software package and plans for future developments.

  5. Implementation of the 3D edge plasma code EMC3-EIRENE on NSTX

    SciTech Connect

    Lore, J. D.; Canik, J. M.; Feng, Y.; Ahn, J. -W.; Maingi, R.; Soukhanovskii, V.

    2012-05-09

    The 3D edge transport code EMC3-EIRENE has been applied for the first time to the NSTX spherical tokamak. A new disconnected double null grid has been developed to allow the simulation of plasma where the radial separation of the inner and outer separatrix is less than characteristic widths (e.g. heat flux width) at the midplane. Modelling results are presented for both an axisymmetric case and a case where 3D magnetic field is applied in an n = 3 configuration. In the vacuum approximation, the perturbed field consists of a wide region of destroyed flux surfaces and helical lobes which are a mixture of long and short connection length field lines formed by the separatrix manifolds. This structure is reflected in coupled 3D plasma fluid (EMC3) and kinetic neutral particle (EIRENE) simulations. The helical lobes extending inside of the unperturbed separatrix are filled in by hot plasma from the core. The intersection of the lobes with the divertor results in a striated flux footprint pattern on the target plates. As a result, profiles of divertor heat and particle fluxes are compared with experimental data, and possible sources of discrepancy are discussed.

  6. Embedded 3D shape measurement system based on a novel spatio-temporal coding method

    NASA Astrophysics Data System (ADS)

    Xu, Bin; Tian, Jindong; Tian, Yong; Li, Dong

    2016-11-01

    Structured light measurement has been wildly used since 1970s in industrial component detection, reverse engineering, 3D molding, robot navigation, medical and many other fields. In order to satisfy the demand for high speed, high precision and high resolution 3-D measurement for embedded system, a new patterns combining binary and gray coding principle in space are designed and projected onto the object surface orderly. Each pixel corresponds to the designed sequence of gray values in time - domain, which is treated as a feature vector. The unique gray vector is then dimensionally reduced to a scalar which could be used as characteristic information for binocular matching. In this method, the number of projected structured light patterns is reduced, and the time-consuming phase unwrapping in traditional phase shift methods is avoided. This algorithm is eventually implemented on DM3730 embedded system for 3-D measuring, which consists of an ARM and a DSP core and has a strong capability of digital signal processing. Experimental results demonstrated the feasibility of the proposed method.

  7. 3-D TECATE/BREW: Thermal, stress, and birefringent ray-tracing codes for solid-state laser design

    NASA Astrophysics Data System (ADS)

    Gelinas, R. J.; Doss, S. K.; Nelson, R. G.

    1994-07-01

    This report describes the physics, code formulations, and numerics that are used in the TECATE (totally Eulerian code for anisotropic thermo-elasticity) and BREW (birefringent ray-tracing of electromagnetic waves) codes for laser design. These codes resolve thermal, stress, and birefringent optical effects in 3-D stationary solid-state systems. This suite of three constituent codes is a package referred to as LASRPAK.

  8. Radiation Coupling with the FUN3D Unstructured-Grid CFD Code

    NASA Technical Reports Server (NTRS)

    Wood, William A.

    2012-01-01

    The HARA radiation code is fully-coupled to the FUN3D unstructured-grid CFD code for the purpose of simulating high-energy hypersonic flows. The radiation energy source terms and surface heat transfer, under the tangent slab approximation, are included within the fluid dynamic ow solver. The Fire II flight test, at the Mach-31 1643-second trajectory point, is used as a demonstration case. Comparisons are made with an existing structured-grid capability, the LAURA/HARA coupling. The radiative surface heat transfer rates from the present approach match the benchmark values within 6%. Although radiation coupling is the focus of the present work, convective surface heat transfer rates are also reported, and are seen to vary depending upon the choice of mesh connectivity and FUN3D ux reconstruction algorithm. On a tetrahedral-element mesh the convective heating matches the benchmark at the stagnation point, but under-predicts by 15% on the Fire II shoulder. Conversely, on a mixed-element mesh the convective heating over-predicts at the stagnation point by 20%, but matches the benchmark away from the stagnation region.

  9. Development and preliminary verification of the 3D core neutronic code: COCO

    SciTech Connect

    Lu, H.; Mo, K.; Li, W.; Bai, N.; Li, J.

    2012-07-01

    As the recent blooming economic growth and following environmental concerns (China)) is proactively pushing forward nuclear power development and encouraging the tapping of clean energy. Under this situation, CGNPC, as one of the largest energy enterprises in China, is planning to develop its own nuclear related technology in order to support more and more nuclear plants either under construction or being operation. This paper introduces the recent progress in software development for CGNPC. The focus is placed on the physical models and preliminary verification results during the recent development of the 3D Core Neutronic Code: COCO. In the COCO code, the non-linear Green's function method is employed to calculate the neutron flux. In order to use the discontinuity factor, the Neumann (second kind) boundary condition is utilized in the Green's function nodal method. Additionally, the COCO code also includes the necessary physical models, e.g. single-channel thermal-hydraulic module, burnup module, pin power reconstruction module and cross-section interpolation module. The preliminary verification result shows that the COCO code is sufficient for reactor core design and analysis for pressurized water reactor (PWR). (authors)

  10. Code verification for unsteady 3-D fluid-solid interaction problems

    NASA Astrophysics Data System (ADS)

    Yu, Kintak Raymond; Étienne, Stéphane; Hay, Alexander; Pelletier, Dominique

    2015-12-01

    This paper describes a procedure to synthesize Manufactured Solutions for Code Verification of an important class of Fluid-Structure Interaction (FSI) problems whose behaviors can be modeled as rigid body vibrations in incompressible fluids. We refer this class of FSI problems as Fluid-Solid Interaction problems, which can be found in many practical engineering applications. The methodology can be utilized to develop Manufactured Solutions for both 2-D and 3-D cases. We demonstrate the procedure with our numerical code. We present details of the formulation and methodology. We also provide the reasonings behind our proposed approach. Results from grid and time step refinement studies confirm the verification of our solver and demonstrate the versatility of the simple synthesis procedure. In addition, the results also demonstrate that the modified decoupled approach to verify flow problems with high-order time-stepping schemes can be employed equally well to verify code for multi-physics problems (here, those of the Fluid-Solid Interaction) when the numerical discretization is based on the Method of Lines.

  11. Using self-similarity compensation for improving inter-layer prediction in scalable 3D holoscopic video coding

    NASA Astrophysics Data System (ADS)

    Conti, Caroline; Nunes, Paulo; Ducla Soares, Luís.

    2013-09-01

    Holoscopic imaging, also known as integral imaging, has been recently attracting the attention of the research community, as a promising glassless 3D technology due to its ability to create a more realistic depth illusion than the current stereoscopic or multiview solutions. However, in order to gradually introduce this technology into the consumer market and to efficiently deliver 3D holoscopic content to end-users, backward compatibility with legacy displays is essential. Consequently, to enable 3D holoscopic content to be delivered and presented on legacy displays, a display scalable 3D holoscopic coding approach is required. Hence, this paper presents a display scalable architecture for 3D holoscopic video coding with a three-layer approach, where each layer represents a different level of display scalability: Layer 0 - a single 2D view; Layer 1 - 3D stereo or multiview; and Layer 2 - the full 3D holoscopic content. In this context, a prediction method is proposed, which combines inter-layer prediction, aiming to exploit the existing redundancy between the multiview and the 3D holoscopic layers, with self-similarity compensated prediction (previously proposed by the authors for non-scalable 3D holoscopic video coding), aiming to exploit the spatial redundancy inherent to the 3D holoscopic enhancement layer. Experimental results show that the proposed combined prediction can improve significantly the rate-distortion performance of scalable 3D holoscopic video coding with respect to the authors' previously proposed solutions, where only inter-layer or only self-similarity prediction is used.

  12. Liner Optimization Studies Using the Ducted Fan Noise Prediction Code TBIEM3D

    NASA Technical Reports Server (NTRS)

    Dunn, M. H.; Farassat, F.

    1998-01-01

    In this paper we demonstrate the usefulness of the ducted fan noise prediction code TBIEM3D as a liner optimization design tool. Boundary conditions on the interior duct wall allow for hard walls or a locally reacting liner with axially segmented, circumferentially uniform impedance. Two liner optimization studies are considered in which farfield noise attenuation due to the presence of a liner is maximized by adjusting the liner impedance. In the first example, the dependence of optimal liner impedance on frequency and liner length is examined. Results show that both the optimal impedance and attenuation levels are significantly influenced by liner length and frequency. In the second example, TBIEM3D is used to compare radiated sound pressure levels between optimal and non-optimal liner cases at conditions designed to simulate take-off. It is shown that significant noise reduction is achieved for most of the sound field by selecting the optimal or near optimal liner impedance. Our results also indicate that there is relatively large region of the impedance plane over which optimal or near optimal liner behavior is attainable. This is an important conclusion for the designer since there are variations in liner characteristics due to manufacturing imprecisions.

  13. ICRF Antenna Characteristics and Comparison with 3-D Code Calculation in the LHD

    SciTech Connect

    Mutoh, T.; Kasahara, H.; Seki, T.; Saito, K.; Kumazawa, R.; Shimpo, F.; Nomura, G.

    2009-11-26

    The plasma coupling characteristics and local heat spots of an ion cyclotron range of frequencies (ICRF) antenna in the Large Helical Device (LHD) are compared with the results of 3-D computing simulator code calculation. We studied several dependences of antenna loading resistances with plasma experimentally and observed a clear relation between the maximum injection power and the loading resistance. Realistic three-dimensional configuration of the ICRF antenna was taken into account to simulate the coupling characteristics and the local heat absorption near the ICRF antenna, which has a helically twisted geometry in the LHD. The electromagnetic field distribution and the current distribution on the antenna strap were calculated. We compared the RF absorption distribution on the antenna structure with the temperature rise during steady state operation and found that the temperature rise was well explained by comparing with the model simulation.

  14. Lossless data compression studies for NOAA hyperspectral environmental suite using 3D integer wavelet transforms with 3D embedded zerotree coding

    NASA Astrophysics Data System (ADS)

    Huang, Bormin; Huang, Hung-Lung; Chen, Hao; Ahuja, Alok; Baggett, Kevin; Schmit, Timothy J.; Heymann, Roger W.

    2003-09-01

    Hyperspectral sounder data is a particular class of data that requires high accuracy for useful retrieval of atmospheric temperature and moisture profiles, surface characteristics, cloud properties, and trace gas information. Therefore compression of these data sets is better to be lossless or near lossless. The next-generation NOAA/NESDIS GOES-R hyperspectral sounder, now referred to as the HES (Hyperspectral Environmental Suite), will have hyperspectral resolution (over one thousand channels with spectral widths on the order of 0.5 wavenumber) and high spatial resolution (less than 10 km). Given the large volume of three-dimensional hyperspectral sounder data that will be generated by the HES instrument, the use of robust data compression techniques will be beneficial to data transfer and archive. In this paper, we study lossless data compression for the HES using 3D integer wavelet transforms via the lifting schemes. The wavelet coefficients are then processed with the 3D embedded zerotree wavelet (EZW) algorithm followed by context-based arithmetic coding. We extend the 3D EZW scheme to take on any size of 3D satellite data, each of whose dimensions need not be divisible by 2N, where N is the levels of the wavelet decomposition being performed. The compression ratios of various kinds of wavelet transforms are presented along with a comparison with the JPEG2000 codec.

  15. Initial Self-Consistent 3D Electron-Cloud Simulations of the LHC Beam with the Code WARP+POSINST

    SciTech Connect

    Vay, J; Furman, M A; Cohen, R H; Friedman, A; Grote, D P

    2005-10-11

    We present initial results for the self-consistent beam-cloud dynamics simulations for a sample LHC beam, using a newly developed set of modeling capability based on a merge [1] of the three-dimensional parallel Particle-In-Cell (PIC) accelerator code WARP [2] and the electron-cloud code POSINST [3]. Although the storage ring model we use as a test bed to contain the beam is much simpler and shorter than the LHC, its lattice elements are realistically modeled, as is the beam and the electron cloud dynamics. The simulated mechanisms for generation and absorption of the electrons at the walls are based on previously validated models available in POSINST [3, 4].

  16. The 3D MHD code GOEMHD3 for astrophysical plasmas with large Reynolds numbers. Code description, verification, and computational performance

    NASA Astrophysics Data System (ADS)

    Skála, J.; Baruffa, F.; Büchner, J.; Rampp, M.

    2015-08-01

    Context. The numerical simulation of turbulence and flows in almost ideal astrophysical plasmas with large Reynolds numbers motivates the implementation of magnetohydrodynamical (MHD) computer codes with low resistivity. They need to be computationally efficient and scale well with large numbers of CPU cores, allow obtaining a high grid resolution over large simulation domains, and be easily and modularly extensible, for instance, to new initial and boundary conditions. Aims: Our aims are the implementation, optimization, and verification of a computationally efficient, highly scalable, and easily extensible low-dissipative MHD simulation code for the numerical investigation of the dynamics of astrophysical plasmas with large Reynolds numbers in three dimensions (3D). Methods: The new GOEMHD3 code discretizes the ideal part of the MHD equations using a fast and efficient leap-frog scheme that is second-order accurate in space and time and whose initial and boundary conditions can easily be modified. For the investigation of diffusive and dissipative processes the corresponding terms are discretized by a DuFort-Frankel scheme. To always fulfill the Courant-Friedrichs-Lewy stability criterion, the time step of the code is adapted dynamically. Numerically induced local oscillations are suppressed by explicit, externally controlled diffusion terms. Non-equidistant grids are implemented, which enhance the spatial resolution, where needed. GOEMHD3 is parallelized based on the hybrid MPI-OpenMP programing paradigm, adopting a standard two-dimensional domain-decomposition approach. Results: The ideal part of the equation solver is verified by performing numerical tests of the evolution of the well-understood Kelvin-Helmholtz instability and of Orszag-Tang vortices. The accuracy of solving the (resistive) induction equation is tested by simulating the decay of a cylindrical current column. Furthermore, we show that the computational performance of the code scales very

  17. Validation of Heat Transfer and Film Cooling Capabilities of the 3-D RANS Code TURBO

    NASA Technical Reports Server (NTRS)

    Shyam, Vikram; Ameri, Ali; Chen, Jen-Ping

    2010-01-01

    The capabilities of the 3-D unsteady RANS code TURBO have been extended to include heat transfer and film cooling applications. The results of simulations performed with the modified code are compared to experiment and to theory, where applicable. Wilcox s k-turbulence model has been implemented to close the RANS equations. Two simulations are conducted: (1) flow over a flat plate and (2) flow over an adiabatic flat plate cooled by one hole inclined at 35 to the free stream. For (1) agreement with theory is found to be excellent for heat transfer, represented by local Nusselt number, and quite good for momentum, as represented by the local skin friction coefficient. This report compares the local skin friction coefficients and Nusselt numbers on a flat plate obtained using Wilcox's k-model with the theory of Blasius. The study looks at laminar and turbulent flows over an adiabatic flat plate and over an isothermal flat plate for two different wall temperatures. It is shown that TURBO is able to accurately predict heat transfer on a flat plate. For (2) TURBO shows good qualitative agreement with film cooling experiments performed on a flat plate with one cooling hole. Quantitatively, film effectiveness is under predicted downstream of the hole.

  18. Quantum self-correction in the 3D cubic code model.

    PubMed

    Bravyi, Sergey; Haah, Jeongwan

    2013-11-15

    A big open question in the quantum information theory concerns the feasibility of a self-correcting quantum memory. A quantum state recorded in such memory can be stored reliably for a macroscopic time without need for active error correction, if the memory is in contact with a cold enough thermal bath. Here we report analytic and numerical evidence for self-correcting behavior in the quantum spin lattice model known as the 3D cubic code. We prove that its memory time is at least L(cβ), where L is the lattice size, β is the inverse temperature of the bath, and c>0 is a constant coefficient. However, this bound applies only if the lattice size L does not exceed a critical value which grows exponentially with β. In that sense, the model can be called a partially self-correcting memory. We also report a Monte Carlo simulation indicating that our analytic bounds on the memory time are tight up to constant coefficients. To model the readout step we introduce a new decoding algorithm, which can be implemented efficiently for any topological stabilizer code. A longer version of this work can be found in Bravyi and Haah, arXiv:1112.3252.

  19. Structured Light Based 3d Scanning for Specular Surface by the Combination of Gray Code and Phase Shifting

    NASA Astrophysics Data System (ADS)

    Zhang, Yujia; Yilmaz, Alper

    2016-06-01

    Surface reconstruction using coded structured light is considered one of the most reliable techniques for high-quality 3D scanning. With a calibrated projector-camera stereo system, a light pattern is projected onto the scene and imaged by the camera. Correspondences between projected and recovered patterns are computed in the decoding process, which is used to generate 3D point cloud of the surface. However, the indirect illumination effects on the surface, such as subsurface scattering and interreflections, will raise the difficulties in reconstruction. In this paper, we apply maximum min-SW gray code to reduce the indirect illumination effects of the specular surface. We also analysis the errors when comparing the maximum min-SW gray code and the conventional gray code, which justifies that the maximum min-SW gray code has significant superiority to reduce the indirect illumination effects. To achieve sub-pixel accuracy, we project high frequency sinusoidal patterns onto the scene simultaneously. But for specular surface, the high frequency patterns are susceptible to decoding errors. Incorrect decoding of high frequency patterns will result in a loss of depth resolution. Our method to resolve this problem is combining the low frequency maximum min-SW gray code and the high frequency phase shifting code, which achieves dense 3D reconstruction for specular surface. Our contributions include: (i) A complete setup of the structured light based 3D scanning system; (ii) A novel combination technique of the maximum min-SW gray code and phase shifting code. First, phase shifting decoding with sub-pixel accuracy. Then, the maximum min-SW gray code is used to resolve the ambiguity resolution. According to the experimental results and data analysis, our structured light based 3D scanning system enables high quality dense reconstruction of scenes with a small number of images. Qualitative and quantitative comparisons are performed to extract the advantages of our new

  20. ORBXYZ: a 3D single-particle orbit code for following charged-particle trajectories in equilibrium magnetic fields

    SciTech Connect

    Anderson, D.V.; Cohen, R.H.; Ferguson, J.R.; Johnston, B.M.; Sharp, C.B.; Willmann, P.A.

    1981-06-30

    The single particle orbit code, TIBRO, has been modified extensively to improve the interpolation methods used and to allow use of vector potential fields in the simulation of charged particle orbits on a 3D domain. A 3D cubic B-spline algorithm is used to generate spline coefficients used in the interpolation. Smooth and accurate field representations are obtained. When vector potential fields are used, the 3D cubic spline interpolation formula analytically generates the magnetic field used to push the particles. This field has del.BETA = 0 to computer roundoff. When magnetic induction is used the interpolation allows del.BETA does not equal 0, which can lead to significant nonphysical results. Presently the code assumes quadrupole symmetry, but this is not an essential feature of the code and could be easily removed for other applications. Many details pertaining to this code are given on microfiche accompanying this report.

  1. TOMO3D: 3-D joint refraction and reflection traveltime tomography parallel code for active-source seismic data—synthetic test

    NASA Astrophysics Data System (ADS)

    Meléndez, A.; Korenaga, J.; Sallarès, V.; Miniussi, A.; Ranero, C. R.

    2015-10-01

    We present a new 3-D traveltime tomography code (TOMO3D) for the modelling of active-source seismic data that uses the arrival times of both refracted and reflected seismic phases to derive the velocity distribution and the geometry of reflecting boundaries in the subsurface. This code is based on its popular 2-D version TOMO2D from which it inherited the methods to solve the forward and inverse problems. The traveltime calculations are done using a hybrid ray-tracing technique combining the graph and bending methods. The LSQR algorithm is used to perform the iterative regularized inversion to improve the initial velocity and depth models. In order to cope with an increased computational demand due to the incorporation of the third dimension, the forward problem solver, which takes most of the run time (˜90 per cent in the test presented here), has been parallelized with a combination of multi-processing and message passing interface standards. This parallelization distributes the ray-tracing and traveltime calculations among available computational resources. The code's performance is illustrated with a realistic synthetic example, including a checkerboard anomaly and two reflectors, which simulates the geometry of a subduction zone. The code is designed to invert for a single reflector at a time. A data-driven layer-stripping strategy is proposed for cases involving multiple reflectors, and it is tested for the successive inversion of the two reflectors. Layers are bound by consecutive reflectors, and an initial velocity model for each inversion step incorporates the results from previous steps. This strategy poses simpler inversion problems at each step, allowing the recovery of strong velocity discontinuities that would otherwise be smoothened.

  2. Depth-based representations: Which coding format for 3D video broadcast applications?

    NASA Astrophysics Data System (ADS)

    Kerbiriou, Paul; Boisson, Guillaume; Sidibé, Korian; Huynh-Thu, Quan

    2011-03-01

    3D Video (3DV) delivery standardization is currently ongoing in MPEG. Now time is to choose 3DV data representation format. What is at stake is the final quality for end-users, i.e. synthesized views' visual quality. We focus on two major rival depth-based formats, namely Multiview Video plus Depth (MVD) and Layered Depth Video (LDV). MVD can be considered as the basic depth-based 3DV format, generated by disparity estimation from multiview sequences. LDV is more sophisticated, with the compaction of multiview data into color- and depth-occlusions layers. We compare final views quality using MVD2 and LDV (both containing two color channels plus two depth components) coded with MVC at various compression ratios. Depending on the format, the appropriate synthesis process is performed to generate final stereoscopic pairs. Comparisons are provided in terms of SSIM and PSNR with respect to original views and to synthesized references (obtained without compression). Eventually, LDV outperforms significantly MVD when using state-of-the-art reference synthesis algorithms. Occlusions management before encoding is advantageous in comparison with handling redundant signals at decoder side. Besides, we observe that depth quantization does not induce much loss on the final view quality until a significant degradation level. Improvements in disparity estimation and view synthesis algorithms are therefore still expected during the remaining standardization steps.

  3. LINFLUX-AE: A Turbomachinery Aeroelastic Code Based on a 3-D Linearized Euler Solver

    NASA Technical Reports Server (NTRS)

    Reddy, T. S. R.; Bakhle, M. A.; Trudell, J. J.; Mehmed, O.; Stefko, G. L.

    2004-01-01

    This report describes the development and validation of LINFLUX-AE, a turbomachinery aeroelastic code based on the linearized unsteady 3-D Euler solver, LINFLUX. A helical fan with flat plate geometry is selected as the test case for numerical validation. The steady solution required by LINFLUX is obtained from the nonlinear Euler/Navier Stokes solver TURBO-AE. The report briefly describes the salient features of LINFLUX and the details of the aeroelastic extension. The aeroelastic formulation is based on a modal approach. An eigenvalue formulation is used for flutter analysis. The unsteady aerodynamic forces required for flutter are obtained by running LINFLUX for each mode, interblade phase angle and frequency of interest. The unsteady aerodynamic forces for forced response analysis are obtained from LINFLUX for the prescribed excitation, interblade phase angle, and frequency. The forced response amplitude is calculated from the modal summation of the generalized displacements. The unsteady pressures, work done per cycle, eigenvalues and forced response amplitudes obtained from LINFLUX are compared with those obtained from LINSUB, TURBO-AE, ASTROP2, and ANSYS.

  4. Hyperspectral image compression: adapting SPIHT and EZW to anisotropic 3-D wavelet coding.

    PubMed

    Christophe, Emmanuel; Mailhes, Corinne; Duhamel, Pierre

    2008-12-01

    Hyperspectral images present some specific characteristics that should be used by an efficient compression system. In compression, wavelets have shown a good adaptability to a wide range of data, while being of reasonable complexity. Some wavelet-based compression algorithms have been successfully used for some hyperspectral space missions. This paper focuses on the optimization of a full wavelet compression system for hyperspectral images. Each step of the compression algorithm is studied and optimized. First, an algorithm to find the optimal 3-D wavelet decomposition in a rate-distortion sense is defined. Then, it is shown that a specific fixed decomposition has almost the same performance, while being more useful in terms of complexity issues. It is shown that this decomposition significantly improves the classical isotropic decomposition. One of the most useful properties of this fixed decomposition is that it allows the use of zero tree algorithms. Various tree structures, creating a relationship between coefficients, are compared. Two efficient compression methods based on zerotree coding (EZW and SPIHT) are adapted on this near-optimal decomposition with the best tree structure found. Performances are compared with the adaptation of JPEG 2000 for hyperspectral images on six different areas presenting different statistical properties.

  5. Implementation of wall boundary conditions for transpiration in F3D thin-layer Navier-Stokes code

    NASA Technical Reports Server (NTRS)

    Kandula, M.; Martin, F. W., Jr.

    1991-01-01

    Numerical boundary conditions for mass injection/suction at the wall are incorporated in the thin-layer Navier-Stokes code, F3D. The accuracy of the boundary conditions and the code is assessed by a detailed comparison of the predictions of velocity distributions and skin-friction coefficients with exact similarity solutions for laminar flow over a flat plate with variable blowing/suction, and measurements for turbulent flow past a flat plate with uniform blowing. In laminar flow, F3D predictions for friction coefficient compare well with exact similarity solution with and without suction, but produces large errors at moderate-to-large values of blowing. A slight Mach number dependence of skin-friction coefficient due to blowing in turbulent flow is computed by F3D code. Predicted surface pressures for turbulent flow past an airfoil with mass injection are in qualitative agreement with measurements for a flat plate.

  6. ORBXYZ: A 3D single-particle orbit code for following charged particle trajectories in equilibrium magnetic fields

    NASA Astrophysics Data System (ADS)

    Anderson, D. V.; Cohen, R. H.; Ferguson, J. R.; Johnston, B. M.; Sharp, C. B.; Willmann, P. A.

    1981-06-01

    The single particle orbit code, TIBRO, was modified extensively to improve the interpolation methods used and to allow use of vector potential fields in the simulation of charged particle orbits on a 3D domain. A 3D cubic B-spline algorithm is used to generate spline coefficients used in the interpolation. Smooth and accurate field representations are obtained. When vector potential fields are used, the 3D cubic spline interpolation formula analytically generates the magnetic field used to push the particles. This field has del.BETA = 0 to computer roundoff. When magnetic induction is used the interpolation allows del.BETA does not equal 0, which can lead to significant nonphysical results. Presently the code assumes quadrupole symmetry, but this is not an essential feature of the code and could be easily removed for other applications.

  7. An Integrated RELAP5-3D and Multiphase CFD Code System Utilizing a Semi Implicit Coupling Technique

    SciTech Connect

    D.L. Aumiller; E.T. Tomlinson; W.L. Weaver

    2001-06-21

    An integrated code system consisting of RELAP5-3D and a multiphase CFD program has been created through the use of a generic semi-implicit coupling algorithm. Unlike previous CFD coupling work, this coupling scheme is numerically stable provided the material Courant limit is not violated in RELAP5-3D or at the coupling locations. The basis for the coupling scheme and details regarding the unique features associated with the application of this technique to a four-field CFD program are presented. Finally, the results of a verification problem are presented. The coupled code system is shown to yield accurate and numerically stable results.

  8. Development of 3D beam-beam simulation for the Tevatron

    SciTech Connect

    Stern, E.; Amundson, J.; Spentzouris, P.; Valishev, A.; Qiang, J.; Ryne, R.; /LBL, Berkeley

    2007-06-01

    We present status of development of a 3D Beam-Beam simulation code for simulating the Fermilab Tevatron collider. The essential features of the code are 3D particle-in-cell Poisson solver for calculating the Beam-Beam electromagnetic interactions with additional modules for linear optics, machine impedance and chromaticity, and multiple bunch tracking. The simulations match synchrobetatron oscillations measured at the VEPP-2M collider. The impedance calculations show beam instability development consistent with analytic expressions.

  9. Particle-in-Cell Calculationsof the Electron Cloud in the ILCPositron Damping Ring Wigglers

    SciTech Connect

    Celata, C.M.; Furman, M.A.; Vay, J.-L.; Grote, D.P.

    2007-07-01

    The self-consistent code suite WARP-POSINST is being used to study electron cloud effects in the ILC positron damping ring wiggler. WARP is a parallelized, 3D particle-in-cell code which is fully self-consistent for all species. The POSINST models for the production of photoelectrons and secondary electrons are used to calculate electron creation. Mesh refinement and a moving reference frame for the calculation will be used to reduce the computer time needed by several orders of magnitude. We present preliminary results for cloud buildup showing 3D electron effects at the nulls of the vertical wiggler field. First results from a benchmark of WARP-POSINST vs. POSINST are also discussed.

  10. Unequal-period combination approach of gray code and phase-shifting for 3-D visual measurement

    NASA Astrophysics Data System (ADS)

    Yu, Shuang; Zhang, Jing; Yu, Xiaoyang; Sun, Xiaoming; Wu, Haibin

    2016-09-01

    Combination of Gray code and phase-shifting is the most practical and advanced approach for the structured light 3-D measurement so far, which is able to measure objects with complex and discontinuous surface. However, for the traditional combination of the Gray code and phase-shifting, the captured Gray code images are not always sharp cut-off in the black-white conversion boundaries, which may lead to wrong decoding analog code orders. Moreover, during the actual measurement, there also exists local decoding error for the wrapped analog code obtained with the phase-shifting approach. Therefore, for the traditional approach, the wrong analog code orders and the local decoding errors will consequently introduce the errors which are equivalent to a fringe period when the analog code is unwrapped. In order to avoid one-fringe period errors, we propose an approach which combines Gray code with phase-shifting according to unequal period. With theoretical analysis, we build the measurement model of the proposed approach, determine the applicable condition and optimize the Gray code encoding period and phase-shifting fringe period. The experimental results verify that the proposed approach can offer a reliable unwrapped analog code, which can be used in 3-D shape measurement.

  11. A new structure of 3D dual-tree discrete wavelet transforms and applications to video denoising and coding

    NASA Astrophysics Data System (ADS)

    Shi, Fei; Wang, Beibei; Selesnick, Ivan W.; Wang, Yao

    2006-01-01

    This paper introduces an anisotropic decomposition structure of a recently introduced 3-D dual-tree discrete wavelet transform (DDWT), and explores the applications for video denoising and coding. The 3-D DDWT is an attractive video representation because it isolates motion along different directions in separate subbands, and thus leads to sparse video decompositions. Our previous investigation shows that the 3-D DDWT, compared to the standard discrete wavelet transform (DWT), complies better with the statistical models based on sparse presumptions, and gives better visual and numerical results when used for statistical denoising algorithms. Our research on video compression also shows that even with 4:1 redundancy, the 3-D DDWT needs fewer coefficients to achieve the same coding quality (in PSNR) by applying the iterative projection-based noise shaping scheme proposed by Kingsbury. The proposed anisotropic DDWT extends the superiority of isotropic DDWT with more directional subbands without adding to the redundancy. Unlike the original 3-D DDWT which applies dyadic decomposition along all three directions and produces isotropic frequency spacing, it has a non-uniform tiling of the frequency space. By applying this structure, we can improve the denoising results, and the number of significant coefficients can be reduced further, which is beneficial for video coding.

  12. Development, Verification and Use of Gust Modeling in the NASA Computational Fluid Dynamics Code FUN3D

    NASA Technical Reports Server (NTRS)

    Bartels, Robert E.

    2012-01-01

    This paper presents the implementation of gust modeling capability in the CFD code FUN3D. The gust capability is verified by computing the response of an airfoil to a sharp edged gust. This result is compared with the theoretical result. The present simulations will be compared with other CFD gust simulations. This paper also serves as a users manual for FUN3D gust analyses using a variety of gust profiles. Finally, the development of an Auto-Regressive Moving-Average (ARMA) reduced order gust model using a gust with a Gaussian profile in the FUN3D code is presented. ARMA simulated results of a sequence of one-minus-cosine gusts is shown to compare well with the same gust profile computed with FUN3D. Proper Orthogonal Decomposition (POD) is combined with the ARMA modeling technique to predict the time varying pressure coefficient increment distribution due to a novel gust profile. The aeroelastic response of a pitch/plunge airfoil to a gust environment is computed with a reduced order model, and compared with a direct simulation of the system in the FUN3D code. The two results are found to agree very well.

  13. Application of the Finite Orbit Width Version of the CQL3D Code to Transport of Fast Ions

    NASA Astrophysics Data System (ADS)

    Petrov, Yu. V.; Harvey, R. W.

    2016-10-01

    The CQL3D bounce-averaged Fokker-Planck (FP) code now includes the ``fully'' neoclassical version in which the diffusion and advection processes are averaged over actual drift orbits, rather than using a 1st-order expansion. Incorporation of Finite-Orbit-Width (FOW) effects results in neoclassical radial transport caused by collisions, RF wave heating and by toroidal electric field (radial pinch). We apply the CQL3D-full-FOW code to study the thermalization and radial transport of high-energy particles, such as alpha-particles produced by fusion in ITER or deuterons from NBI in NSTX, under effect of their interaction with auxiliary RF waves. A particular attention is given to visualization of transport in 3D space of velocity +major-radius coordinates. Supported by USDOE Grants FC02-01ER54649, FG02-04ER54744, and SC0006614.

  14. Acoustic Scattering by Three-Dimensional Stators and Rotors Using the SOURCE3D Code. Volume 2; Scattering Plots

    NASA Technical Reports Server (NTRS)

    Meyer, Harold D.

    1999-01-01

    This second volume of Acoustic Scattering by Three-Dimensional Stators and Rotors Using the SOURCE3D Code provides the scattering plots referenced by Volume 1. There are 648 plots. Half are for the 8750 rpm "high speed" operating condition and the other half are for the 7031 rpm "mid speed" operating condition.

  15. Upgrades and application of FIT3D NBI-plasma interaction code in view of LHD deuterium campaigns

    NASA Astrophysics Data System (ADS)

    Vincenzi, P.; Bolzonella, T.; Murakami, S.; Osakabe, M.; Seki, R.; Yokoyama, M.

    2016-12-01

    This work presents an upgrade of the FIT3D neutral beam-plasma interaction code, part of TASK3D, a transport suite of codes, and its application to LHD experiments in the framework of the preparation for the first deuterium experiments in the LHD. The neutral beam injector (NBI) system will be upgraded to D injection, and efforts have been recently made to extend LHD modelling capabilities to D operations. The implemented upgrades for FIT3D to enable D NBI modelling in D plasmas are presented, with a discussion and benchmark of the models used. In particular, the beam ionization module has been modified and a routine for neutron production estimation has been implemented. The upgraded code is then used to evaluate the NBI power deposition in experiments with different plasma compositions. In the recent LHD campaign, in fact, He experiments have been run to help the prediction of main effects which may be relevant in future LHD D plasmas. Identical H/He experiments showed similar electron density and temperature profiles, while a higher ion temperature with an He majority has been observed. From first applications of the upgraded FIT3D code it turns out that, although more NB power appears to be coupled with the He plasma, the NBI power deposition is unaffected, suggesting that heat deposition does not play a key role in the increased ion temperature with He plasma.

  16. Modeling and Analysis of a Lunar Space Reactor with the Computer Code RELAP5-3D/ATHENA

    SciTech Connect

    Carbajo, Juan J; Qualls, A L

    2008-01-01

    The transient analysis 3-dimensional (3-D) computer code RELAP5-3D/ATHENA has been employed to model and analyze a space reactor of 180 kW(thermal), 40 kW (net, electrical) with eight Stirling engines (SEs). Each SE will generate over 6 kWe; the excess power will be needed for the pumps and other power management devices. The reactor will be cooled by NaK (a eutectic mixture of sodium and potassium which is liquid at ambient temperature). This space reactor is intended to be deployed over the surface of the Moon or Mars. The reactor operating life will be 8 to 10 years. The RELAP5-3D/ATHENA code is being developed and maintained by Idaho National Laboratory. The code can employ a variety of coolants in addition to water, the original coolant employed with early versions of the code. The code can also use 3-D volumes and 3-D junctions, thus allowing for more realistic representation of complex geometries. A combination of 3-D and 1-D volumes is employed in this study. The space reactor model consists of a primary loop and two secondary loops connected by two heat exchangers (HXs). Each secondary loop provides heat to four SEs. The primary loop includes the nuclear reactor with the lower and upper plena, the core with 85 fuel pins, and two vertical heat exchangers (HX). The maximum coolant temperature of the primary loop is 900 K. The secondary loops also employ NaK as a coolant at a maximum temperature of 877 K. The SEs heads are at a temperature of 800 K and the cold sinks are at a temperature of ~400 K. Two radiators will be employed to remove heat from the SEs. The SE HXs surrounding the SE heads are of annular design and have been modeled using 3-D volumes. These 3-D models have been used to improve the HX design by optimizing the flows of coolant and maximizing the heat transferred to the SE heads. The transients analyzed include failure of one or more Stirling engines, trip of the reactor pump, and trips of the secondary loop pumps feeding the HXs of the

  17. Validation of the BISON 3D Fuel Performance Code: Temperature Comparisons for Concentrically and Eccentrically Located Fuel Pellets

    SciTech Connect

    J. D. Hales; D. M. Perez; R. L. Williamson; S. R. Novascone; B. W. Spencer

    2013-03-01

    BISON is a modern finite-element based nuclear fuel performance code that has been under development at the Idaho National Laboratory (USA) since 2009. The code is applicable to both steady and transient fuel behaviour and is used to analyse either 2D axisymmetric or 3D geometries. BISON has been applied to a variety of fuel forms including LWR fuel rods, TRISO-coated fuel particles, and metallic fuel in both rod and plate geometries. Code validation is currently in progress, principally by comparison to instrumented LWR fuel rods. Halden IFA experiments constitute a large percentage of the current BISON validation base. The validation emphasis here is centreline temperatures at the beginning of fuel life, with comparisons made to seven rods from the IFA-431 and 432 assemblies. The principal focus is IFA-431 Rod 4, which included concentric and eccentrically located fuel pellets. This experiment provides an opportunity to explore 3D thermomechanical behaviour and assess the 3D simulation capabilities of BISON. Analysis results agree with experimental results showing lower fuel centreline temperatures for eccentric fuel with the peak temperature shifted from the centreline. The comparison confirms with modern 3D analysis tools that the measured temperature difference between concentric and eccentric pellets is not an artefact and provides a quantitative explanation for the difference.

  18. User's manual for three dimensional boundary layer (BL3-D) code

    NASA Technical Reports Server (NTRS)

    Anderson, O. L.; Caplin, B.

    1985-01-01

    An assessment has been made of the applicability of a 3-D boundary layer analysis to the calculation of heat transfer, total pressure losses, and streamline flow patterns on the surface of both stationary and rotating turbine passages. In support of this effort, an analysis has been developed to calculate a general nonorthogonal surface coordinate system for arbitrary 3-D surfaces and also to calculate the boundary layer edge conditions for compressible flow using the surface Euler equations and experimental data to calibrate the method, calculations are presented for the pressure endwall, and suction surfaces of a stationary cascade and for the pressure surface of a rotating turbine blade. The results strongly indicate that the 3-D boundary layer analysis can give good predictions of the flow field, loss, and heat transfer on the pressure, suction, and endwall surface of a gas turbine passage.

  19. User's manual for three dimensional boundary layer (BL3-D) code

    NASA Astrophysics Data System (ADS)

    Anderson, O. L.; Caplin, B.

    1985-08-01

    An assessment has been made of the applicability of a 3-D boundary layer analysis to the calculation of heat transfer, total pressure losses, and streamline flow patterns on the surface of both stationary and rotating turbine passages. In support of this effort, an analysis has been developed to calculate a general nonorthogonal surface coordinate system for arbitrary 3-D surfaces and also to calculate the boundary layer edge conditions for compressible flow using the surface Euler equations and experimental data to calibrate the method, calculations are presented for the pressure endwall, and suction surfaces of a stationary cascade and for the pressure surface of a rotating turbine blade. The results strongly indicate that the 3-D boundary layer analysis can give good predictions of the flow field, loss, and heat transfer on the pressure, suction, and endwall surface of a gas turbine passage.

  20. TART97 a coupled neutron-photon 3-D, combinatorial geometry Monte Carlo transport code

    SciTech Connect

    Cullen, D.E.

    1997-11-22

    TART97 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo transport code. This code can on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART97 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART97 is distributed on CD. This CD contains on- line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART97 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART97 and its data riles.

  1. The digital code driven autonomous synthesis of ibuprofen automated in a 3D-printer-based robot.

    PubMed

    Kitson, Philip J; Glatzel, Stefan; Cronin, Leroy

    2016-01-01

    An automated synthesis robot was constructed by modifying an open source 3D printing platform. The resulting automated system was used to 3D print reaction vessels (reactionware) of differing internal volumes using polypropylene feedstock via a fused deposition modeling 3D printing approach and subsequently make use of these fabricated vessels to synthesize the nonsteroidal anti-inflammatory drug ibuprofen via a consecutive one-pot three-step approach. The synthesis of ibuprofen could be achieved on different scales simply by adjusting the parameters in the robot control software. The software for controlling the synthesis robot was written in the python programming language and hard-coded for the synthesis of ibuprofen by the method described, opening possibilities for the sharing of validated synthetic 'programs' which can run on similar low cost, user-constructed robotic platforms towards an 'open-source' regime in the area of chemical synthesis.

  2. The digital code driven autonomous synthesis of ibuprofen automated in a 3D-printer-based robot

    PubMed Central

    Kitson, Philip J; Glatzel, Stefan

    2016-01-01

    An automated synthesis robot was constructed by modifying an open source 3D printing platform. The resulting automated system was used to 3D print reaction vessels (reactionware) of differing internal volumes using polypropylene feedstock via a fused deposition modeling 3D printing approach and subsequently make use of these fabricated vessels to synthesize the nonsteroidal anti-inflammatory drug ibuprofen via a consecutive one-pot three-step approach. The synthesis of ibuprofen could be achieved on different scales simply by adjusting the parameters in the robot control software. The software for controlling the synthesis robot was written in the python programming language and hard-coded for the synthesis of ibuprofen by the method described, opening possibilities for the sharing of validated synthetic ‘programs’ which can run on similar low cost, user-constructed robotic platforms towards an ‘open-source’ regime in the area of chemical synthesis. PMID:28144350

  3. Recent Hydrodynamics Improvements to the RELAP5-3D Code

    SciTech Connect

    Richard A. Riemke; Cliff B. Davis; Richard.R. Schultz

    2009-07-01

    The hydrodynamics section of the RELAP5-3D computer program has been recently improved. Changes were made as follows: (1) improved turbine model, (2) spray model for the pressurizer model, (3) feedwater heater model, (4) radiological transport model, (5) improved pump model, and (6) compressor model.

  4. Simulations of 3D LPI's relevant to IFE using the PIC code OSIRIS

    NASA Astrophysics Data System (ADS)

    Tsung, F. S.; Mori, W. B.; Winjum, B. J.

    2014-10-01

    We will study three dimensional effects of laser plasma instabilities, including backward raman scattering, the high frequency hybrid instability, and the two plasmon instability using OSIRIS in 3D Cartesian geometry and cylindrical 2D OSIRIS with azimuthal mode decompositions. With our new capabilities we hope to demonstrate that we are capable of studying single speckle physics relevant to IFE in an efficent manner.

  5. Preliminary Results from the Application of Automated Adjoint Code Generation to CFL3D

    NASA Technical Reports Server (NTRS)

    Carle, Alan; Fagan, Mike; Green, Lawrence L.

    1998-01-01

    This report describes preliminary results obtained using an automated adjoint code generator for Fortran to augment a widely-used computational fluid dynamics flow solver to compute derivatives. These preliminary results with this augmented code suggest that, even in its infancy, the automated adjoint code generator can accurately and efficiently deliver derivatives for use in transonic Euler-based aerodynamic shape optimization problems with hundreds to thousands of independent design variables.

  6. Assessment of 3D Codes for Predicting Liner Attenuation in Flow Ducts

    NASA Technical Reports Server (NTRS)

    Watson, W. R.; Nark, D. M.; Jones, M. G.

    2008-01-01

    This paper presents comparisons of seven propagation codes for predicting liner attenuation in ducts with flow. The selected codes span the spectrum of methods available (finite element, parabolic approximation, and pseudo-time domain) and are collectively representative of the state-of-art in the liner industry. These codes are included because they have two-dimensional and three-dimensional versions and can be exported to NASA's Columbia Supercomputer. The basic assumptions, governing differential equations, boundary conditions, and numerical methods underlying each code are briefly reviewed and an assessment is performed based on two predefined metrics. The two metrics used in the assessment are the accuracy of the predicted attenuation and the amount of wall clock time to predict the attenuation. The assessment is performed over a range of frequencies, mean flow rates, and grazing flow liner impedances commonly used in the liner industry. The primary conclusions of the study are (1) predicted attenuations are in good agreement for rigid wall ducts, (2) the majority of codes compare well to each other and to approximate results from mode theory for soft wall ducts, (3) most codes compare well to measured data on a statistical basis, (4) only the finite element codes with cubic Hermite polynomials capture extremely large attenuations, and (5) wall clock time increases by an order of magnitude or more are observed for a three-dimensional code relative to the corresponding two-dimensional version of the same code.

  7. iRegNet3D: three-dimensional integrated regulatory network for the genomic analysis of coding and non-coding disease mutations.

    PubMed

    Liang, Siqi; Tippens, Nathaniel D; Zhou, Yaoda; Mort, Matthew; Stenson, Peter D; Cooper, David N; Yu, Haiyuan

    2017-01-18

    The mechanistic details of most disease-causing mutations remain poorly explored within the context of regulatory networks. We present a high-resolution three-dimensional integrated regulatory network (iRegNet3D) in the form of a web tool, where we resolve the interfaces of all known transcription factor (TF)-TF, TF-DNA and chromatin-chromatin interactions for the analysis of both coding and non-coding disease-associated mutations to obtain mechanistic insights into their functional impact. Using iRegNet3D, we find that disease-associated mutations may perturb the regulatory network through diverse mechanisms including chromatin looping. iRegNet3D promises to be an indispensable tool in large-scale sequencing and disease association studies.

  8. Implementation of a 3D halo neutral model in the TRANSP code and application to projected NSTX-U plasmas

    SciTech Connect

    Medley, S. S.; Liu, D.; Gorelenkova, M. V.; Heidbrink, W. W.; Stagner, L.

    2016-01-12

    A 3D halo neutral code developed at the Princeton Plasma Physics Laboratory and implemented for analysis using the TRANSP code is applied to projected National Spherical Torus eXperiment-Upgrade (NSTX-U plasmas). The legacy TRANSP code did not handle halo neutrals properly since they were distributed over the plasma volume rather than remaining in the vicinity of the neutral beam footprint as is actually the case. The 3D halo neutral code uses a 'beam-in-a-box' model that encompasses both injected beam neutrals and resulting halo neutrals. Upon deposition by charge exchange, a subset of the full, one-half and one-third beam energy components produce first generation halo neutrals that are tracked through successive generations until an ionization event occurs or the descendant halos exit the box. The 3D halo neutral model and neutral particle analyzer (NPA) simulator in the TRANSP code have been benchmarked with the Fast-Ion D-Alpha simulation (FIDAsim) code, which provides Monte Carlo simulations of beam neutral injection, attenuation, halo generation, halo spatial diffusion, and photoemission processes. When using the same atomic physics database, TRANSP and FIDAsim simulations achieve excellent agreement on the spatial profile and magnitude of beam and halo neutral densities and the NPA energy spectrum. The simulations show that the halo neutral density can be comparable to the beam neutral density. These halo neutrals can double the NPA flux, but they have minor effects on the NPA energy spectrum shape. The TRANSP and FIDAsim simulations also suggest that the magnitudes of beam and halo neutral densities are relatively sensitive to the choice of the atomic physics databases.

  9. Implementation of a 3D halo neutral model in the TRANSP code and application to projected NSTX-U plasmas

    NASA Astrophysics Data System (ADS)

    Medley, S. S.; Liu, D.; Gorelenkova, M. V.; Heidbrink, W. W.; Stagner, L.

    2016-02-01

    A 3D halo neutral code developed at the Princeton Plasma Physics Laboratory and implemented for analysis using the TRANSP code is applied to projected National Spherical Torus eXperiment-Upgrade (NSTX-U plasmas). The legacy TRANSP code did not handle halo neutrals properly since they were distributed over the plasma volume rather than remaining in the vicinity of the neutral beam footprint as is actually the case. The 3D halo neutral code uses a ‘beam-in-a-box’ model that encompasses both injected beam neutrals and resulting halo neutrals. Upon deposition by charge exchange, a subset of the full, one-half and one-third beam energy components produce first generation halo neutrals that are tracked through successive generations until an ionization event occurs or the descendant halos exit the box. The 3D halo neutral model and neutral particle analyzer (NPA) simulator in the TRANSP code have been benchmarked with the Fast-Ion D-Alpha simulation (FIDAsim) code, which provides Monte Carlo simulations of beam neutral injection, attenuation, halo generation, halo spatial diffusion, and photoemission processes. When using the same atomic physics database, TRANSP and FIDAsim simulations achieve excellent agreement on the spatial profile and magnitude of beam and halo neutral densities and the NPA energy spectrum. The simulations show that the halo neutral density can be comparable to the beam neutral density. These halo neutrals can double the NPA flux, but they have minor effects on the NPA energy spectrum shape. The TRANSP and FIDAsim simulations also suggest that the magnitudes of beam and halo neutral densities are relatively sensitive to the choice of the atomic physics databases.

  10. Analysis and Compensation for Lateral Chromatic Aberration in a Color Coding Structured Light 3D Measurement System

    PubMed Central

    Huang, Junhui; Xue, Qi; Wang, Zhao; Gao, Jianmin

    2016-01-01

    While color-coding methods have improved the measuring efficiency of a structured light three-dimensional (3D) measurement system, they decreased the measuring accuracy significantly due to lateral chromatic aberration (LCA). In this study, the LCA in a structured light measurement system is analyzed, and a method is proposed to compensate the error caused by the LCA. Firstly, based on the projective transformation, a 3D error map of LCA is constructed in the projector images by using a flat board and comparing the image coordinates of red, green and blue circles with the coordinates of white circles at preselected sample points within the measurement volume. The 3D map consists of the errors, which are the equivalent errors caused by LCA of the camera and projector. Then in measurements, error values of LCA are calculated and compensated to correct the projector image coordinates through the 3D error map and a tri-linear interpolation method. Eventually, 3D coordinates with higher accuracy are re-calculated according to the compensated image coordinates. The effectiveness of the proposed method is verified in the following experiments. PMID:27598174

  11. Analysis and Compensation for Lateral Chromatic Aberration in a Color Coding Structured Light 3D Measurement System.

    PubMed

    Huang, Junhui; Xue, Qi; Wang, Zhao; Gao, Jianmin

    2016-09-03

    While color-coding methods have improved the measuring efficiency of a structured light three-dimensional (3D) measurement system, they decreased the measuring accuracy significantly due to lateral chromatic aberration (LCA). In this study, the LCA in a structured light measurement system is analyzed, and a method is proposed to compensate the error caused by the LCA. Firstly, based on the projective transformation, a 3D error map of LCA is constructed in the projector images by using a flat board and comparing the image coordinates of red, green and blue circles with the coordinates of white circles at preselected sample points within the measurement volume. The 3D map consists of the errors, which are the equivalent errors caused by LCA of the camera and projector. Then in measurements, error values of LCA are calculated and compensated to correct the projector image coordinates through the 3D error map and a tri-linear interpolation method. Eventually, 3D coordinates with higher accuracy are re-calculated according to the compensated image coordinates. The effectiveness of the proposed method is verified in the following experiments.

  12. Full 3D visualization tool-kit for Monte Carlo and deterministic transport codes

    SciTech Connect

    Frambati, S.; Frignani, M.

    2012-07-01

    We propose a package of tools capable of translating the geometric inputs and outputs of many Monte Carlo and deterministic radiation transport codes into open source file formats. These tools are aimed at bridging the gap between trusted, widely-used radiation analysis codes and very powerful, more recent and commonly used visualization software, thus supporting the design process and helping with shielding optimization. Three main lines of development were followed: mesh-based analysis of Monte Carlo codes, mesh-based analysis of deterministic codes and Monte Carlo surface meshing. The developed kit is considered a powerful and cost-effective tool in the computer-aided design for radiation transport code users of the nuclear world, and in particular in the fields of core design and radiation analysis. (authors)

  13. Numerical Simulation of Two-grid Ion Optics Using a 3D Code

    NASA Technical Reports Server (NTRS)

    Anderson, John R.; Katz, Ira; Goebel, Dan

    2004-01-01

    A three-dimensional ion optics code has been developed under NASA's Project Prometheus to model two grid ion optics systems. The code computes the flow of positive ions from the discharge chamber through the ion optics and into the beam downstream of the thruster. The rate at which beam ions interact with background neutral gas to form charge exchange ions is also computed. Charge exchange ion trajectories are computed to determine where they strike the ion optics grid surfaces and to determine the extent of sputter erosion they cause. The code has been used to compute predictions of the erosion pattern and wear rate on the NSTAR ion optics system; the code predicts the shape of the eroded pattern but overestimates the initial wear rate by about 50%. An example of use of the code to estimate the NEXIS thruster accelerator grid life is also presented.

  14. Development of a 3-D upwind PNS code for chemically reacting hypersonic flowfields

    NASA Technical Reports Server (NTRS)

    Tannehill, J. C.; Wadawadigi, G.

    1992-01-01

    Two new parabolized Navier-Stokes (PNS) codes were developed to compute the three-dimensional, viscous, chemically reacting flow of air around hypersonic vehicles such as the National Aero-Space Plane (NASP). The first code (TONIC) solves the gas dynamic and species conservation equations in a fully coupled manner using an implicit, approximately-factored, central-difference algorithm. This code was upgraded to include shock fitting and the capability of computing the flow around complex body shapes. The revised TONIC code was validated by computing the chemically-reacting (M(sub infinity) = 25.3) flow around a 10 deg half-angle cone at various angles of attack and the Ames All-Body model at 0 deg angle of attack. The results of these calculations were in good agreement with the results from the UPS code. One of the major drawbacks of the TONIC code is that the central-differencing of fluxes across interior flowfield discontinuities tends to introduce errors into the solution in the form of local flow property oscillations. The second code (UPS), originally developed for a perfect gas, has been extended to permit either perfect gas, equilibrium air, or nonequilibrium air computations. The code solves the PNS equations using a finite-volume, upwind TVD method based on Roe's approximate Riemann solver that was modified to account for real gas effects. The dissipation term associated with this algorithm is sufficiently adaptive to flow conditions that, even when attempting to capture very strong shock waves, no additional smoothing is required. For nonequilibrium calculations, the code solves the fluid dynamic and species continuity equations in a loosely-coupled manner. This code was used to calculate the hypersonic, laminar flow of chemically reacting air over cones at various angles of attack. In addition, the flow around the McDonnel Douglas generic option blended-wing-body was computed and comparisons were made between the perfect gas, equilibrium air, and the

  15. A 3D-CFD code for accurate prediction of fluid flows and fluid forces in seals

    NASA Technical Reports Server (NTRS)

    Athavale, M. M.; Przekwas, A. J.; Hendricks, R. C.

    1994-01-01

    Current and future turbomachinery requires advanced seal configurations to control leakage, inhibit mixing of incompatible fluids and to control the rotodynamic response. In recognition of a deficiency in the existing predictive methodology for seals, a seven year effort was established in 1990 by NASA's Office of Aeronautics Exploration and Technology, under the Earth-to-Orbit Propulsion program, to develop validated Computational Fluid Dynamics (CFD) concepts, codes and analyses for seals. The effort will provide NASA and the U.S. Aerospace Industry with advanced CFD scientific codes and industrial codes for analyzing and designing turbomachinery seals. An advanced 3D CFD cylindrical seal code has been developed, incorporating state-of-the-art computational methodology for flow analysis in straight, tapered and stepped seals. Relevant computational features of the code include: stationary/rotating coordinates, cylindrical and general Body Fitted Coordinates (BFC) systems, high order differencing schemes, colocated variable arrangement, advanced turbulence models, incompressible/compressible flows, and moving grids. This paper presents the current status of code development, code demonstration for predicting rotordynamic coefficients, numerical parametric study of entrance loss coefficients for generic annular seals, and plans for code extensions to labyrinth, damping, and other seal configurations.

  16. Concurrent Algorithm For Particle-In-Cell Simulations

    NASA Technical Reports Server (NTRS)

    Liewer, Paulett C.; Decyk, Viktor K.

    1990-01-01

    Separate decompositions used for particle-motion and field calculations. General Concurrent Particle-in-Cell (GCPIC) algorithm used to implement motions of individual plasma particles (ions and electrons) under influence of particle-in-cell (PIC) computer codes on concurrent processors. Simulates motions of individual plasma particles under influence of electromagnetic fields generated by particles themselves. Performed to study variety of nonlinear problems in plasma physics, including magnetic and inertial fusion, plasmas in outer space, propagation of electron and ion beams, free-electron lasers, and particle accelerators.

  17. Development of a Top-View Numeric Coding Teaching-Learning Trajectory within an Elementary Grades 3-D Visualization Design Research Project

    ERIC Educational Resources Information Center

    Sack, Jacqueline J.

    2013-01-01

    This article explicates the development of top-view numeric coding of 3-D cube structures within a design research project focused on 3-D visualization skills for elementary grades children. It describes children's conceptual development of 3-D cube structures using concrete models, conventional 2-D pictures and abstract top-view numeric…

  18. Users manual for CAFE-3D : a computational fluid dynamics fire code.

    SciTech Connect

    Khalil, Imane; Lopez, Carlos; Suo-Anttila, Ahti Jorma

    2005-03-01

    The Container Analysis Fire Environment (CAFE) computer code has been developed to model all relevant fire physics for predicting the thermal response of massive objects engulfed in large fires. It provides realistic fire thermal boundary conditions for use in design of radioactive material packages and in risk-based transportation studies. The CAFE code can be coupled to commercial finite-element codes such as MSC PATRAN/THERMAL and ANSYS. This coupled system of codes can be used to determine the internal thermal response of finite element models of packages to a range of fire environments. This document is a user manual describing how to use the three-dimensional version of CAFE, as well as a description of CAFE input and output parameters. Since this is a user manual, only a brief theoretical description of the equations and physical models is included.

  19. SPACE CHARGE DYNAMICS SIMULATED IN 3 - D IN THE CODE ORBIT.

    SciTech Connect

    LUCCIO,A.U.; DIMPERIO,N.L.; BEEBE - WANG,J.

    2002-06-02

    Several improvements have been done on space charge calculations in the PIC code ORBIT, specialized for high intensity circular hadron accelerators. We present results of different Poisson solvers in the presence of conductive walls.

  20. Version 3.0 of code Java for 3D simulation of the CCA model

    NASA Astrophysics Data System (ADS)

    Zhang, Kebo; Zuo, Junsen; Dou, Yifeng; Li, Chao; Xiong, Hailing

    2016-10-01

    In this paper we provide a new version of program for replacing the previous version. The frequency of traversing the clusters-list was reduced, and some code blocks were optimized properly; in addition, we appended and revised the comments of the source code for some methods or attributes. The compared experimental results show that new version has better time efficiency than the previous version.

  1. PORTA: A Massively Parallel Code for 3D Non-LTE Polarized Radiative Transfer

    NASA Astrophysics Data System (ADS)

    Štěpán, J.

    2014-10-01

    The interpretation of the Stokes profiles of the solar (stellar) spectral line radiation requires solving a non-LTE radiative transfer problem that can be very complex, especially when the main interest lies in modeling the linear polarization signals produced by scattering processes and their modification by the Hanle effect. One of the main difficulties is due to the fact that the plasma of a stellar atmosphere can be highly inhomogeneous and dynamic, which implies the need to solve the non-equilibrium problem of generation and transfer of polarized radiation in realistic three-dimensional stellar atmospheric models. Here we present PORTA, a computer program we have developed for solving, in three-dimensional (3D) models of stellar atmospheres, the problem of the generation and transfer of spectral line polarization taking into account anisotropic radiation pumping and the Hanle and Zeeman effects in multilevel atoms. The numerical method of solution is based on a highly convergent iterative algorithm, whose convergence rate is insensitive to the grid size, and on an accurate short-characteristics formal solver of the Stokes-vector transfer equation which uses monotonic Bezier interpolation. In addition to the iterative method and the 3D formal solver, another important feature of PORTA is a novel parallelization strategy suitable for taking advantage of massively parallel computers. Linear scaling of the solution with the number of processors allows to reduce the solution time by several orders of magnitude. We present useful benchmarks and a few illustrations of applications using a 3D model of the solar chromosphere resulting from MHD simulations. Finally, we present our conclusions with a view to future research. For more details see Štěpán & Trujillo Bueno (2013).

  2. Wavelet-based Poisson Solver for use in Particle-In-CellSimulations

    SciTech Connect

    Terzic, B.; Mihalcea, D.; Bohn, C.L.; Pogorelov, I.V.

    2005-05-13

    We report on a successful implementation of a wavelet based Poisson solver for use in 3D particle-in-cell (PIC) simulations. One new aspect of our algorithm is its ability to treat the general(inhomogeneous) Dirichlet boundary conditions (BCs). The solver harnesses advantages afforded by the wavelet formulation, such as sparsity of operators and data sets, existence of effective preconditioners, and the ability simultaneously to remove numerical noise and further compress relevant data sets. Having tested our method as a stand-alone solver on two model problems, we merged it into IMPACT-T to obtain a fully functional serial PIC code. We present and discuss preliminary results of application of the new code to the modeling of the Fermilab/NICADD and AES/JLab photoinjectors.

  3. Comparison of a 3-D GPU-Assisted Maxwell Code and Ray Tracing for Reflectometry on ITER

    NASA Astrophysics Data System (ADS)

    Gady, Sarah; Kubota, Shigeyuki; Johnson, Irena

    2015-11-01

    Electromagnetic wave propagation and scattering in magnetized plasmas are important diagnostics for high temperature plasmas. 1-D and 2-D full-wave codes are standard tools for measurements of the electron density profile and fluctuations; however, ray tracing results have shown that beam propagation in tokamak plasmas is inherently a 3-D problem. The GPU-Assisted Maxwell Code utilizes the FDTD (Finite-Difference Time-Domain) method for solving the Maxwell equations with the cold plasma approximation in a 3-D geometry. Parallel processing with GPGPU (General-Purpose computing on Graphics Processing Units) is used to accelerate the computation. Previously, we reported on initial comparisons of the code results to 1-D numerical and analytical solutions, where the size of the computational grid was limited by the on-board memory of the GPU. In the current study, this limitation is overcome by using domain decomposition and an additional GPU. As a practical application, this code is used to study the current design of the ITER Low Field Side Reflectometer (LSFR) for the Equatorial Port Plug 11 (EPP11). A detailed examination of Gaussian beam propagation in the ITER edge plasma will be presented, as well as comparisons with ray tracing. This work was made possible by funding from the Department of Energy for the Summer Undergraduate Laboratory Internship (SULI) program. This work is supported by the US DOE Contract No.DE-AC02-09CH11466 and DE-FG02-99-ER54527.

  4. Three-dimensional inelastic analysis for hot section components, BEST 3D code

    NASA Technical Reports Server (NTRS)

    Wilson, Raymond B.; Banerjee, Prasanta K.

    1987-01-01

    The goal is the development of an alternative stress analysis tool, distinct from the finite element method, applicable to the engineering analysis of gas turbine engine structures. The boundary element method was selected for this development effort on the basis of its already demonstrated applicability to a variety of geometries and problem types characteristic of gas turbine engine components. Major features of the BEST3D computer program are described, and some of the significant developments carried out as part of the Inelastic Methods Contract are outlined.

  5. Validation and Comparison of 2D and 3D Codes for Nearshore Motion of Long Waves Using Benchmark Problems

    NASA Astrophysics Data System (ADS)

    Velioǧlu, Deniz; Cevdet Yalçıner, Ahmet; Zaytsev, Andrey

    2016-04-01

    Tsunamis are huge waves with long wave periods and wave lengths that can cause great devastation and loss of life when they strike a coast. The interest in experimental and numerical modeling of tsunami propagation and inundation increased considerably after the 2011 Great East Japan earthquake. In this study, two numerical codes, FLOW 3D and NAMI DANCE, that analyze tsunami propagation and inundation patterns are considered. Flow 3D simulates linear and nonlinear propagating surface waves as well as long waves by solving three-dimensional Navier-Stokes (3D-NS) equations. NAMI DANCE uses finite difference computational method to solve 2D depth-averaged linear and nonlinear forms of shallow water equations (NSWE) in long wave problems, specifically tsunamis. In order to validate these two codes and analyze the differences between 3D-NS and 2D depth-averaged NSWE equations, two benchmark problems are applied. One benchmark problem investigates the runup of long waves over a complex 3D beach. The experimental setup is a 1:400 scale model of Monai Valley located on the west coast of Okushiri Island, Japan. Other benchmark problem is discussed in 2015 National Tsunami Hazard Mitigation Program (NTHMP) Annual meeting in Portland, USA. It is a field dataset, recording the Japan 2011 tsunami in Hilo Harbor, Hawaii. The computed water surface elevation and velocity data are compared with the measured data. The comparisons showed that both codes are in fairly good agreement with each other and benchmark data. The differences between 3D-NS and 2D depth-averaged NSWE equations are highlighted. All results are presented with discussions and comparisons. Acknowledgements: Partial support by Japan-Turkey Joint Research Project by JICA on earthquakes and tsunamis in Marmara Region (JICA SATREPS - MarDiM Project), 603839 ASTARTE Project of EU, UDAP-C-12-14 project of AFAD Turkey, 108Y227, 113M556 and 213M534 projects of TUBITAK Turkey, RAPSODI (CONCERT_Dis-021) of CONCERT

  6. 3-D kinetics simulations of the NRU reactor using the DONJON code

    SciTech Connect

    Leung, T. C.; Atfield, M. D.; Koclas, J.

    2006-07-01

    The NRU reactor is highly heterogeneous, heavy-water cooled and moderated, with online refuelling capability. It is licensed to operate at a maximum power of 135 MW, with a peak thermal flux of approximately 4.0 x 10{sup 18} n.m{sup -2} . s{sup -1}. In support of the safe operation of NRU, three-dimensional kinetics calculations for reactor transients have been performed using the DONJON code. The code was initially designed to perform space-time kinetics calculations for the CANDU{sup R} power reactors. This paper describes how the DONJON code can be applied to perform neutronic simulations for the analysis of reactor transients in NRU, and presents calculation results for some transients. (authors)

  7. Numerical simulation of jet aerodynamics using the three-dimensional Navier-Stokes code PAB3D

    NASA Technical Reports Server (NTRS)

    Pao, S. Paul; Abdol-Hamid, Khaled S.

    1996-01-01

    This report presents a unified method for subsonic and supersonic jet analysis using the three-dimensional Navier-Stokes code PAB3D. The Navier-Stokes code was used to obtain solutions for axisymmetric jets with on-design operating conditions at Mach numbers ranging from 0.6 to 3.0, supersonic jets containing weak shocks and Mach disks, and supersonic jets with nonaxisymmetric nozzle exit geometries. This report discusses computational methods, code implementation, computed results, and comparisons with available experimental data. Very good agreement is shown between the numerical solutions and available experimental data over a wide range of operating conditions. The Navier-Stokes method using the standard Jones-Launder two-equation kappa-epsilon turbulence model can accurately predict jet flow, and such predictions are made without any modification to the published constants for the turbulence model.

  8. Application of ATHLET/DYN3D coupled codes system for fast liquid metal cooled reactor steady state simulation

    NASA Astrophysics Data System (ADS)

    Ivanov, V.; Samokhin, A.; Danicheva, I.; Khrennikov, N.; Bouscuet, J.; Velkov, K.; Pasichnyk, I.

    2017-01-01

    In this paper the approaches used for developing of the BN-800 reactor test model and for validation of coupled neutron-physic and thermohydraulic calculations are described. Coupled codes ATHLET 3.0 (code for thermohydraulic calculations of reactor transients) and DYN3D (3-dimensional code of neutron kinetics) are used for calculations. The main calculation results of reactor steady state condition are provided. 3-D model used for neutron calculations was developed for start reactor BN-800 load. The homogeneous approach is used for description of reactor assemblies. Along with main simplifications, the main reactor BN-800 core zones are described (LEZ, MEZ, HEZ, MOX, blankets). The 3D neutron physics calculations were provided with 28-group library, which is based on estimated nuclear data ENDF/B-7.0. Neutron SCALE code was used for preparation of group constants. Nodalization hydraulic model has boundary conditions by coolant mass-flow rate for core inlet part, by pressure and enthalpy for core outlet part, which can be chosen depending on reactor state. Core inlet and outlet temperatures were chosen according to reactor nominal state. The coolant mass flow rate profiling through the core is based on reactor power distribution. The test thermohydraulic calculations made with using of developed model showed acceptable results in coolant mass flow rate distribution through the reactor core and in axial temperature and pressure distribution. The developed model will be upgraded in future for different transient analysis in metal-cooled fast reactors of BN type including reactivity transients (control rods withdrawal, stop of the main circulation pump, etc.).

  9. Acoustic Scattering by Three-Dimensional Stators and Rotors Using the SOURCE3D Code. Volume 1; Analysis and Results

    NASA Technical Reports Server (NTRS)

    Meyer, Harold D.

    1999-01-01

    This report provides a study of rotor and stator scattering using the SOURCE3D Rotor Wake/Stator Interaction Code. SOURCE3D is a quasi-three-dimensional computer program that uses three-dimensional acoustics and two-dimensional cascade load response theory to calculate rotor and stator modal reflection and transmission (scattering) coefficients. SOURCE3D is at the core of the TFaNS (Theoretical Fan Noise Design/Prediction System), developed for NASA, which provides complete fully coupled (inlet, rotor, stator, exit) noise solutions for turbofan engines. The reason for studying scattering is that we must first understand the behavior of the individual scattering coefficients provided by SOURCE3D, before eventually understanding the more complicated predictions from TFaNS. To study scattering, we have derived a large number of scattering curves for vane and blade rows. The curves are plots of output wave power divided by input wave power (in dB units) versus vane/blade ratio. Some of these plots are shown in this report. All of the plots are provided in a separate volume. To assist in understanding the plots, formulas have been derived for special vane/blade ratios for which wavefronts are either parallel or normal to rotor or stator chords. From the plots, we have found that, for the most part, there was strong transmission and weak reflection over most of the vane/blade ratio range for the stator. For the rotor, there was little transmission loss.

  10. A parallel 3-D discrete wavelet transform architecture using pipelined lifting scheme approach for video coding

    NASA Astrophysics Data System (ADS)

    Hegde, Ganapathi; Vaya, Pukhraj

    2013-10-01

    This article presents a parallel architecture for 3-D discrete wavelet transform (3-DDWT). The proposed design is based on the 1-D pipelined lifting scheme. The architecture is fully scalable beyond the present coherent Daubechies filter bank (9, 7). This 3-DDWT architecture has advantages such as no group of pictures restriction and reduced memory referencing. It offers low power consumption, low latency and high throughput. The computing technique is based on the concept that lifting scheme minimises the storage requirement. The application specific integrated circuit implementation of the proposed architecture is done by synthesising it using 65 nm Taiwan Semiconductor Manufacturing Company standard cell library. It offers a speed of 486 MHz with a power consumption of 2.56 mW. This architecture is suitable for real-time video compression even with large frame dimensions.

  11. Applications of the 3-D Deterministic Transport Code Attlla for Core Safety Analysis

    SciTech Connect

    D. S. Lucas

    2004-10-01

    An LDRD (Laboratory Directed Research and Development) project is ongoing at the Idaho National Engineering and Environmental Laboratory (INEEL) for applying the three-dimensional multi-group deterministic neutron transport code (Attila®) to criticality, flux and depletion calculations of the Advanced Test Reactor (ATR). This paper discusses the model development, capabilities of Attila, generation of the cross-section libraries, and comparisons to an ATR MCNP model and future.

  12. Drug-laden 3D biodegradable label using QR code for anti-counterfeiting of drugs.

    PubMed

    Fei, Jie; Liu, Ran

    2016-06-01

    Wiping out counterfeit drugs is a great task for public health care around the world. The boost of these drugs makes treatment to become potentially harmful or even lethal. In this paper, biodegradable drug-laden QR code label for anti-counterfeiting of drugs is proposed that can provide the non-fluorescence recognition and high capacity. It is fabricated by the laser cutting to achieve the roughness over different surface which causes the difference in the gray levels on the translucent material the QR code pattern, and the micro mold process to obtain the drug-laden biodegradable label. We screened biomaterials presenting the relevant conditions and further requirements of the package. The drug-laden microlabel is on the surface of the troches or the bottom of the capsule and can be read by a simple smartphone QR code reader application. Labeling the pill directly and decoding the information successfully means more convenient and simple operation with non-fluorescence and high capacity in contrast to the traditional methods.

  13. A treatment planning code for inverse planning and 3D optimization in hadrontherapy.

    PubMed

    Bourhaleb, F; Marchetto, F; Attili, A; Pittà, G; Cirio, R; Donetti, M; Giordanengo, S; Givehchi, N; Iliescu, S; Krengli, M; La Rosa, A; Massai, D; Pecka, A; Pardo, J; Peroni, C

    2008-09-01

    The therapeutic use of protons and ions, especially carbon ions, is a new technique and a challenge to conform the dose to the target due to the energy deposition characteristics of hadron beams. An appropriate treatment planning system (TPS) is strictly necessary to take full advantage. We developed a TPS software, ANCOD++, for the evaluation of the optimal conformal dose. ANCOD++ is an analytical code using the voxel-scan technique as an active method to deliver the dose to the patient, and provides treatment plans with both proton and carbon ion beams. The iterative algorithm, coded in C++ and running on Unix/Linux platform, allows the determination of the best fluences of the individual beams to obtain an optimal physical dose distribution, delivering a maximum dose to the target volume and a minimum dose to critical structures. The TPS is supported by Monte Carlo simulations with the package GEANT3 to provide the necessary physical lookup tables and verify the optimized treatment plans. Dose verifications done by means of full Monte Carlo simulations show an overall good agreement with the treatment planning calculations. We stress the fact that the purpose of this work is the verification of the physical dose and a next work will be dedicated to the radiobiological evaluation of the equivalent biological dose.

  14. FOI-PERFECT code: 3D relaxation MHD modeling and Applications

    NASA Astrophysics Data System (ADS)

    Wang, Gang-Hua; Duan, Shu-Chao; Comutational Physics Team Team

    2016-10-01

    One of the challenges in numerical simulations of electromagnetically driven high energy density (HED) systems is the existence of vacuum region. FOI-PERFECT code adopts a full relaxation magnetohydrodynamic (MHD) model. The electromagnetic part of the conventional model adopts the magnetic diffusion approximation. The vacuum region is approximated by artificially increasing the resistivity. On one hand the phase/group velocity is superluminal and hence non-physical in the vacuum region, on the other hand a diffusion equation with large diffusion coefficient can only be solved by implicit scheme which is difficult to be parallelized and converge. A better alternative is to solve the full electromagnetic equations. Maxwell's equations coupled with the constitutive equation, generalized Ohm's law, constitute a relaxation model. The dispersion relation is given to show its transition from electromagnetic propagation in vacuum to resistive MHD in plasma in a natural way. The phase and group velocities are finite for this system. A better time stepping is adopted to give a 3rd full order convergence in time domain without the stiff relaxation term restriction. Therefore it is convenient for explicit & parallel computations. Some numerical results of FOI-PERFECT code are also given. Project supported by the National Natural Science Foundation of China (Grant No. 11571293) And Foundation of China Academy of Engineering Physics (Grant No. 2015B0201023).

  15. Embedded morphological dilation coding for 2D and 3D images

    NASA Astrophysics Data System (ADS)

    Lazzaroni, Fabio; Signoroni, Alberto; Leonardi, Riccardo

    2002-01-01

    Current wavelet-based image coders obtain high performance thanks to the identification and the exploitation of the statistical properties of natural images in the transformed domain. Zerotree-based algorithms, as Embedded Zerotree Wavelets (EZW) and Set Partitioning In Hierarchical Trees (SPIHT), offer high Rate-Distortion (RD) coding performance and low computational complexity by exploiting statistical dependencies among insignificant coefficients on hierarchical subband structures. Another possible approach tries to predict the clusters of significant coefficients by means of some form of morphological dilation. An example of a morphology-based coder is the Significance-Linked Connected Component Analysis (SLCCA) that has shown performance which are comparable to the zerotree-based coders but is not embedded. A new embedded bit-plane coder is proposed here based on morphological dilation of significant coefficients and context based arithmetic coding. The algorithm is able to exploit both intra-band and inter-band statistical dependencies among wavelet significant coefficients. Moreover, the same approach is used both for two and three-dimensional wavelet-based image compression. Finally we the algorithms are tested on some 2D images and on a medical volume, by comparing the RD results to those obtained with the state-of-the-art wavelet-based coders.

  16. Code and Solution Verification of 3D Numerical Modeling of Flow in the Gust Erosion Chamber

    NASA Astrophysics Data System (ADS)

    Yuen, A.; Bombardelli, F. A.

    2014-12-01

    Erosion microcosms are devices commonly used to investigate the erosion and transport characteristics of sediments at the bed of rivers, lakes, or estuaries. In order to understand the results these devices provide, the bed shear stress and flow field need to be accurately described. In this research, the UMCES Gust Erosion Microcosm System (U-GEMS) is numerically modeled using Finite Volume Method. The primary aims are to simulate the bed shear stress distribution at the surface of the sediment core/bottom of the microcosm, and to validate the U-GEMS produces uniform bed shear stress at the bottom of the microcosm. The mathematical model equations are solved by on a Cartesian non-uniform grid. Multiple numerical runs were developed with different input conditions and configurations. Prior to developing the U-GEMS model, the General Moving Objects (GMO) model and different momentum algorithms in the code were verified. Code verification of these solvers was done via simulating the flow inside the top wall driven square cavity on different mesh sizes to obtain order of convergence. The GMO model was used to simulate the top wall in the top wall driven square cavity as well as the rotating disk in the U-GEMS. Components simulated with the GMO model were rigid bodies that could have any type of motion. In addition cross-verification was conducted as results were compared with numerical results by Ghia et al. (1982), and good agreement was found. Next, CFD results were validated by simulating the flow within the conventional microcosm system without suction and injection. Good agreement was found when the experimental results by Khalili et al. (2008) were compared. After the ability of the CFD solver was proved through the above code verification steps. The model was utilized to simulate the U-GEMS. The solution was verified via classic mesh convergence study on four consecutive mesh sizes, in addition to that Grid Convergence Index (GCI) was calculated and based on

  17. Validation of a Node-Centered Wall Function Model for the Unstructured Flow Code FUN3D

    NASA Technical Reports Server (NTRS)

    Carlson, Jan-Renee; Vasta, Veer N.; White, Jeffery

    2015-01-01

    In this paper, the implementation of two wall function models in the Reynolds averaged Navier-Stokes (RANS) computational uid dynamics (CFD) code FUN3D is described. FUN3D is a node centered method for solving the three-dimensional Navier-Stokes equations on unstructured computational grids. The first wall function model, based on the work of Knopp et al., is used in conjunction with the one-equation turbulence model of Spalart-Allmaras. The second wall function model, also based on the work of Knopp, is used in conjunction with the two-equation k-! turbulence model of Menter. The wall function models compute the wall momentum and energy flux, which are used to weakly enforce the wall velocity and pressure flux boundary conditions in the mean flow momentum and energy equations. These wall conditions are implemented in an implicit form where the contribution of the wall function model to the Jacobian are also included. The boundary conditions of the turbulence transport equations are enforced explicitly (strongly) on all solid boundaries. The use of the wall function models is demonstrated on four test cases: a at plate boundary layer, a subsonic di user, a 2D airfoil, and a 3D semi-span wing. Where possible, different near-wall viscous spacing tactics are examined. Iterative residual convergence was obtained in most cases. Solution results are compared with theoretical and experimental data for several variations of grid spacing. In general, very good comparisons with data were achieved.

  18. Predictions of bubbly flows in vertical pipes using two-fluid models in CFDS-FLOW3D code

    SciTech Connect

    Banas, A.O.; Carver, M.B.; Unrau, D.

    1995-09-01

    This paper reports the results of a preliminary study exploring the performance of two sets of two-fluid closure relationships applied to the simulation of turbulent air-water bubbly upflows through vertical pipes. Predictions obtained with the default CFDS-FLOW3D model for dispersed flows were compared with the predictions of a new model (based on the work of Lee), and with the experimental data of Liu. The new model, implemented in the CFDS-FLOW3D code, included additional source terms in the {open_quotes}standard{close_quotes} {kappa}-{epsilon} transport equations for the liquid phase, as well as modified model coefficients and wall functions. All simulations were carried out in a 2-D axisymmetric format, collapsing the general multifluid framework of CFDS-FLOW3D to the two-fluid (air-water) case. The newly implemented model consistently improved predictions of radial-velocity profiles of both phases, but failed to accurately reproduce the experimental phase-distribution data. This shortcoming was traced to the neglect of anisotropic effects in the modelling of liquid-phase turbulence. In this sense, the present investigation should be considered as the first step toward the ultimate goal of developing a theoretically sound and universal CFD-type two-fluid model for bubbly flows in channels.

  19. CFD Code Calibration and Inlet-Fairing Effects On a 3D Hypersonic Powered-Simulation Model

    NASA Technical Reports Server (NTRS)

    Huebner, Lawrence D.; Tatum, Kenneth E.

    1993-01-01

    A three-dimensional (3D) computational study has been performed addressing issues related to the wind tunnel testing of a hypersonic powered-simulation model. The study consisted of three objectives. The first objective was to calibrate a state-of-the-art computational fluid dynamics (CFD) code in its ability to predict hypersonic powered-simulation flows by comparing CFD solutions with experimental surface pressure data. Aftbody lower surface pressures were well predicted, but lower surface wing pressures were less accurately predicted. The second objective was to determine the 3D effects on the aftbody created by fairing over the inlet; this was accomplished by comparing the CFD solutions of two closed-inlet powered configurations with a flowing- inlet powered configuration. Although results at four freestream Mach numbers indicate that the exhaust plume tends to isolate the aftbody surface from most forebody flow- field differences, a smooth inlet fairing provides the least aftbody force and moment variation compared to a flowing inlet. The final objective was to predict and understand the 3D characteristics of exhaust plume development at selected points on a representative flight path. Results showed a dramatic effect of plume expansion onto the wings as the freestream Mach number and corresponding nozzle pressure ratio are increased.

  20. DISCO: A 3D Moving-mesh Magnetohydrodynamics Code Designed for the Study of Astrophysical Disks

    NASA Astrophysics Data System (ADS)

    Duffell, Paul C.

    2016-09-01

    This work presents the publicly available moving-mesh magnetohydrodynamics (MHD) code DISCO. DISCO is efficient and accurate at evolving orbital fluid motion in two and three dimensions, especially at high Mach numbers. DISCO employs a moving-mesh approach utilizing a dynamic cylindrical mesh that can shear azimuthally to follow the orbital motion of the gas. The moving mesh removes diffusive advection errors and allows for longer time-steps than a static grid. MHD is implemented in DISCO using an HLLD Riemann solver and a novel constrained transport (CT) scheme that is compatible with the mesh motion. DISCO is tested against a wide variety of problems, which are designed to test its stability, accuracy, and scalability. In addition, several MHD tests are performed which demonstrate the accuracy and stability of the new CT approach, including two tests of the magneto-rotational instability, one testing the linear growth rate and the other following the instability into the fully turbulent regime.

  1. Extension of a three-dimensional viscous wing flow analysis user's manual: VISTA 3-D code

    NASA Technical Reports Server (NTRS)

    Weinberg, Bernard C.; Chen, Shyi-Yaung; Thoren, Stephen J.; Shamroth, Stephen J.

    1990-01-01

    Three-dimensional unsteady viscous effects can significantly influence the performance of fixed and rotary wing aircraft. These effects are important in both flows about helicopter rotors in forward flight and flows about three-dimensional (swept and tapered) supercritical wings. A computational procedure for calculating such flow field was developed. The procedure is based upon an alternating direction technique employing the Linearized Block Implicit method for solving three-dimensional viscous flow problems. In order to demonstrate the viability of this method, two- and three-dimensional problems are computed. These include the flow over a two-dimensional NACA 0012 airfoil under steady and oscillating conditions, and the steady, skewed, three-dimensional flow on a flat plate. Although actual three-dimensional flows over wings were not obtained, the ground work was laid for considering such flows. In this report a description of the computer code is given.

  2. Development of Scientific Simulation 3D Full Wave ICRF Code for Stellarators and Heating/CD Scenarios Development

    SciTech Connect

    Vdovin V.L.

    2005-08-15

    In this report we describe theory and 3D full wave code description for the wave excitation, propagation and absorption in 3-dimensional (3D) stellarator equilibrium high beta plasma in ion cyclotron frequency range (ICRF). This theory forms a basis for a 3D code creation, urgently needed for the ICRF heating scenarios development for the operated LHD, constructed W7-X, NCSX and projected CSX3 stellarators, as well for re evaluation of ICRF scenarios in operated tokamaks and in the ITER . The theory solves the 3D Maxwell-Vlasov antenna-plasma-conducting shell boundary value problem in the non-orthogonal flux coordinates ({Psi}, {theta}, {var_phi}), {Psi} being magnetic flux function, {theta} and {var_phi} being the poloidal and toroidal angles, respectively. All basic physics, like wave refraction, reflection and diffraction are self consistently included, along with the fundamental ion and ion minority cyclotron resonances, two ion hybrid resonance, electron Landau and TTMP absorption. Antenna reactive impedance and loading resistance are also calculated and urgently needed for an antenna -generator matching. This is accomplished in a real confining magnetic field being varying in a plasma major radius direction, in toroidal and poloidal directions, through making use of the hot dense plasma wave induced currents with account to the finite Larmor radius effects. We expand the solution in Fourier series over the toroidal ({var_phi}) and poloidal ({theta}) angles and solve resulting ordinary differential equations in a radial like {Psi}-coordinate by finite difference method. The constructed discretization scheme is divergent-free one, thus retaining the basic properties of original equations. The Fourier expansion over the angle coordinates has given to us the possibility to correctly construct the ''parallel'' wave number k{sub //}, and thereby to correctly describe the ICRF waves absorption by a hot plasma. The toroidal harmonics are tightly coupled with each

  3. New laser driver for physics modeling codes using unstructured 3d grids

    SciTech Connect

    Kaiser, T; Milovich, J L; Prasad, M K; Shestakov, A I

    1999-02-01

    We present a status report on the current state of development, testing and application of a new scheme for laser beam evolution and power deposition on three-dimensional unstructured grids. The scheme is being encapsulated in a C++ library for convenient porting to existing modeling codes. We have added a new ray propagator that is second order in time, allowing rays to refract within computational zones as well as at zone interfaces. In a globally constant free-electron density gradient on a randomized hexahedral mesh,the new integrator produces ray trajectories that agree with analytic results to within machine roundoff. A new method for computing the inverse-bremmstrahlung energy deposition rate that captures its highly non-uniform spatial dependence within a zone has also been added. This allows accurate trajectories without the necessity of sub-stepping in time. Other enhancements (not discussed) include multiple user-configurable beams, computation of the electron oscillation velocity in the laser electric field and energy-deposition accounting. Results of laser-driven simulations are presented in a companion paper.

  4. A Fast Parallel Simulation Code for Interaction between Proto-Planetary Disk and Embedded Proto-Planets: Implementation for 3D Code

    SciTech Connect

    Li, Shengtai; Li, Hui

    2012-06-14

    We develop a 3D simulation code for interaction between the proto-planetary disk and embedded proto-planets. The protoplanetary disk is treated as a three-dimensional (3D), self-gravitating gas whose motion is described by the locally isothermal Navier-Stokes equations in a spherical coordinate centered on the star. The differential equations for the disk are similar to those given in Kley et al. (2009) with a different gravitational potential that is defined in Nelson et al. (2000). The equations are solved by directional split Godunov method for the inviscid Euler equations plus operator-split method for the viscous source terms. We use a sub-cycling technique for the azimuthal sweep to alleviate the time step restriction. We also extend the FARGO scheme of Masset (2000) and modified in Li et al. (2001) to our 3D code to accelerate the transport in the azimuthal direction. Furthermore, we have implemented a reduced 2D (r, {theta}) and a fully 3D self-gravity solver on our uniform disk grid, which extends our 2D method (Li, Buoni, & Li 2008) to 3D. This solver uses a mode cut-off strategy and combines FFT in the azimuthal direction and direct summation in the radial and meridional direction. An initial axis-symmetric equilibrium disk is generated via iteration between the disk density profile and the 2D disk-self-gravity. We do not need any softening in the disk self-gravity calculation as we have used a shifted grid method (Li et al. 2008) to calculate the potential. The motion of the planet is limited on the mid-plane and the equations are the same as given in D'Angelo et al. (2005), which we adapted to the polar coordinates with a fourth-order Runge-Kutta solver. The disk gravitational force on the planet is assumed to evolve linearly with time between two hydrodynamics time steps. The Planetary potential acting on the disk is calculated accurately with a small softening given by a cubic-spline form (Kley et al. 2009). Since the torque is extremely sensitive to

  5. Modeling Warm Dense Matter Experiments using the 3D ALE-AMR Code and the Move Toward Exascale Computing

    SciTech Connect

    Koniges, A; Eder, E; Liu, W; Barnard, J; Friedman, A; Logan, G; Fisher, A; Masers, N; Bertozzi, A

    2011-11-04

    The Neutralized Drift Compression Experiment II (NDCX II) is an induction accelerator planned for initial commissioning in 2012. The final design calls for a 3 MeV, Li+ ion beam, delivered in a bunch with characteristic pulse duration of 1 ns, and transverse dimension of order 1 mm. The NDCX II will be used in studies of material in the warm dense matter (WDM) regime, and ion beam/hydrodynamic coupling experiments relevant to heavy ion based inertial fusion energy. We discuss recent efforts to adapt the 3D ALE-AMR code to model WDM experiments on NDCX II. The code, which combines Arbitrary Lagrangian Eulerian (ALE) hydrodynamics with Adaptive Mesh Refinement (AMR), has physics models that include ion deposition, radiation hydrodynamics, thermal diffusion, anisotropic material strength with material time history, and advanced models for fragmentation. Experiments at NDCX-II will explore the process of bubble and droplet formation (two-phase expansion) of superheated metal solids using ion beams. Experiments at higher temperatures will explore equation of state and heavy ion fusion beam-to-target energy coupling efficiency. Ion beams allow precise control of local beam energy deposition providing uniform volumetric heating on a timescale shorter than that of hydrodynamic expansion. The ALE-AMR code does not have any export control restrictions and is currently running at the National Energy Research Scientific Computing Center (NERSC) at LBNL and has been shown to scale well to thousands of CPUs. New surface tension models that are being implemented and applied to WDM experiments. Some of the approaches use a diffuse interface surface tension model that is based on the advective Cahn-Hilliard equations, which allows for droplet breakup in divergent velocity fields without the need for imposed perturbations. Other methods require seeding or other methods for droplet breakup. We also briefly discuss the effects of the move to exascale computing and related

  6. A study of the earth radiation budget using a 3D Monte-Carlo radiative transer code

    NASA Astrophysics Data System (ADS)

    Okata, M.; Nakajima, T.; Sato, Y.; Inoue, T.; Donovan, D. P.

    2013-12-01

    The purpose of this study is to evaluate the earth's radiation budget when data are available from satellite-borne active sensors, i.e. cloud profiling radar (CPR) and lidar, and a multi-spectral imager (MSI) in the project of the Earth Explorer/EarthCARE mission. For this purpose, we first developed forward and backward 3D Monte Carlo radiative transfer codes that can treat a broadband solar flux calculation including thermal infrared emission calculation by k-distribution parameters of Sekiguchi and Nakajima (2008). In order to construct the 3D cloud field, we tried the following three methods: 1) stochastic cloud generated by randomized optical thickness each layer distribution and regularly-distributed tilted clouds, 2) numerical simulations by a non-hydrostatic model with bin cloud microphysics model and 3) Minimum cloud Information Deviation Profiling Method (MIDPM) as explained later. As for the method-2 (numerical modeling method), we employed numerical simulation results of Californian summer stratus clouds simulated by a non-hydrostatic atmospheric model with a bin-type cloud microphysics model based on the JMA NHM model (Iguchi et al., 2008; Sato et al., 2009, 2012) with horizontal (vertical) grid spacing of 100m (20m) and 300m (20m) in a domain of 30km (x), 30km (y), 1.5km (z) and with a horizontally periodic lateral boundary condition. Two different cell systems were simulated depending on the cloud condensation nuclei (CCN) concentration. In the case of horizontal resolution of 100m, regionally averaged cloud optical thickness, , and standard deviation of COT, were 3.0 and 4.3 for pristine case and 8.5 and 7.4 for polluted case, respectively. In the MIDPM method, we first construct a library of pair of observed vertical profiles from active sensors and collocated imager products at the nadir footprint, i.e. spectral imager radiances, cloud optical thickness (COT), effective particle radius (RE) and cloud top temperature (Tc). We then select a

  7. (abstract) 3D Electromagnetic Plasma Particle Simulations

    NASA Technical Reports Server (NTRS)

    Wang, J.; Liewer, P. C.; Lyster, P.; Decyk, V. K.

    1993-01-01

    A 3D electromagnetic plasma particle-in-cell code has been developed using the General Concurrent PIC algorithm. The GCPIC algorithm uses a domain decomposition to divide the computation among the processors. Particles must be exchanged between processors as they move. The efficiencies for 1-, 2-, and 3-dimensional partitions of the three dimensional domain are compared, and the algorithm is found to be very efficient even when a large fraction (e.g., 30%) of the particles must be exchanged at every time step. This PIC code has been used to perform simulations of a variety of space plasma physics problems. Results of three applications will be discussed: 1) plasma disturbances induced by moving conducting bodies in a magnetized plasma; 2) plasma plume interactions; and 3) solar wind termination shock.

  8. Parameter analysis for a high-gain harmonic generation FEL using a recently developed 3D polychromatic code.

    SciTech Connect

    Biedron, S. G.; Freund, H. P.; Yu, L.-H.

    1999-09-10

    One possible design for a fourth-generation light source is the high-gain harmonic generation (HGHG) free-electron laser (FEL). Here, a coherent seed with a wavelength at a subharmonic of the desired output radiation interacts with the electron beam in an energy-modulating section. This energy modulation is then converted into spatial bunching while traversing a dispersive section (a three-dipole chicane). The final step is passage through a radiative section, an undulator tuned to the desired higher harmonic output wavelength. The coherent seed serves to remove noise and can be at a much lower subharmonic of the output radiation, thus eliminating the concerns found in self-amplified spontaneous emission (SASE) and seeded FELs, respectively. Recently, a 3D code that includes multiple frequencies, multiple undulatory (both in quantity and/or type), quadruple magnets, and dipole magnets was developed to easily simulate HGHG. Here, a brief review of the HGHG theory, the code development, the Accelerator Test Facility's (ATF) HGHG FEL experimental parameters, and the parameter analysis from simulations of this specific experiment will be discussed.

  9. Runaway electron distributions obtained with the CQL3D Fokker-Planck code under tokamak disruption conditions

    SciTech Connect

    Harvey, R.W.; Chan, V.S.

    1996-12-31

    Runaway of electrons to high energy during plasma disruptions occurs due to large induced toroidal electric fields which tend to maintain the toroidal plasma current, in accord with Lenz law. This has been observed in many tokamaks. Within the closed flux surfaces, the bounce-averaged CQL3D Fokker-Planck code is well suited to obtain the resulting electron distributions, nonthermal contributions to electrical conductivity, and runaway rates. The time-dependent 2D in momentum-space (p{sub {parallel}} and p{sub {perpendicular}}) distributions axe calculated on a radial array of noncircular flux surfaces, including bounce-averaging of the Fokker-Planck equation to account for toroidal trapping effects. In the steady state, the resulting distributions represent a balance between applied toroidal electric field, relativistic Coulomb collisions, and synchrotron radiation. The code can be run in a mode where the electrons are sourced at low velocity and run off the high velocity edge of the computational mesh, giving runaway rates at steady state. At small minor radius, the results closely match previous results reported by Kulsrud et al. It is found that the runaway rate has a strong dependence on inverse aspect ratio e, decreasing by a factor {approx} 5 as e increases from 0.0 to 0.3. The code can also be run with a radial diffusion and pinching term, simulating radial transport with plasma pinching to maintain a given density profile. Results show a transport reduction of runaways in the plasma center, and an enhancement towards the edge due to the electrons from the plasma center. Avalanching of runaways due to a knock-on electron source is being included.

  10. Development and application of a ray-tracing code integrating with 3D equilibrium mapping in LHD ECH experiments

    NASA Astrophysics Data System (ADS)

    Tsujimura, T., Ii; Kubo, S.; Takahashi, H.; Makino, R.; Seki, R.; Yoshimura, Y.; Igami, H.; Shimozuma, T.; Ida, K.; Suzuki, C.; Emoto, M.; Yokoyama, M.; Kobayashi, T.; Moon, C.; Nagaoka, K.; Osakabe, M.; Kobayashi, S.; Ito, S.; Mizuno, Y.; Okada, K.; Ejiri, A.; Mutoh, T.

    2015-11-01

    The central electron temperature has successfully reached up to 7.5 keV in large helical device (LHD) plasmas with a central high-ion temperature of 5 keV and a central electron density of 1.3× {{10}19} m-3. This result was obtained by heating with a newly-installed 154 GHz gyrotron and also the optimisation of injection geometry in electron cyclotron heating (ECH). The optimisation was carried out by using the ray-tracing code ‘LHDGauss’, which was upgraded to include the rapid post-processing three-dimensional (3D) equilibrium mapping obtained from experiments. For ray-tracing calculations, LHDGauss can automatically read the relevant data registered in the LHD database after a discharge, such as ECH injection settings (e.g. Gaussian beam parameters, target positions, polarisation and ECH power) and Thomson scattering diagnostic data along with the 3D equilibrium mapping data. The equilibrium map of the electron density and temperature profiles are then extrapolated into the region outside the last closed flux surface. Mode purity, or the ratio between the ordinary mode and the extraordinary mode, is obtained by calculating the 1D full-wave equation along the direction of the rays from the antenna to the absorption target point. Using the virtual magnetic flux surfaces, the effects of the modelled density profiles and the magnetic shear at the peripheral region with a given polarisation are taken into account. Power deposition profiles calculated for each Thomson scattering measurement timing are registered in the LHD database. The adjustment of the injection settings for the desired deposition profile from the feedback provided on a shot-by-shot basis resulted in an effective experimental procedure.

  11. Application of the Finite Orbit Width Version of the CQL3D Code to NBI +RF Heating of NSTX Plasma

    NASA Astrophysics Data System (ADS)

    Petrov, Yu. V.; Harvey, R. W.

    2015-11-01

    The CQL3D bounce-averaged Fokker-Planck (FP) code has been upgraded to include Finite-Orbit-Width (FOW) effects. The calculations can be done either with a fast Hybrid-FOW option or with a slower but neoclassically complete full-FOW option. The banana regime neoclassical radial transport appears naturally in the full-FOW version by averaging the local collision coefficients along guiding center orbits, with a proper transformation matrix from local (R, Z) coordinates to the midplane computational coordinates, where the FP equation is solved. In a similar way, the local quasilinear rf diffusion terms give rise to additional radial transport of orbits. The full-FOW version is applied to simulation of ion heating in NSTX plasma. It is demonstrated that it can describe the physics of transport phenomena in plasma with auxiliary heating, in particular, the enhancement of the radial transport of ions by RF heating and the occurrence of the bootstrap current. Because of the bounce-averaging on the FPE, the results are obtained in a relatively short computational time. A typical full-FOW run time is 30 min using 140 MPI cores. Due to an implicit solver, calculations with a large time step (tested up to dt = 0.5 sec) remain stable. Supported by USDOE grants SC0006614, ER54744, and ER44649.

  12. The calculation of static polarizabilities of 1-3D periodic compounds. the implementation in the crystal code.

    PubMed

    Ferrero, Mauro; Rérat, Michel; Orlando, Roberto; Dovesi, Roberto

    2008-07-15

    The Coupled Perturbed Hartree-Fock (CPHF) scheme has been implemented in the CRYSTAL06 program, that uses a gaussian type basis set, for systems periodic in 1D (polymers), 2D (slabs), 3D (crystals) and, as a limiting case, 0D (molecules), which enables comparison with molecular codes. CPHF is applied to the calculation of the polarizability alpha of LiF in different aggregation states: finite and infinite chains, slabs, and cubic crystal. Correctness of the computational scheme for the various dimensionalities and its numerical efficiency are confirmed by the correct trend of alpha: alpha for a finite linear chain containing N LiF units with large N tends to the value for the infinite chain, N parallel chains give the slab value when N is sufficiently large, and N superimposed slabs tend to the bulk value. CPHF results compare well with those obtained with a saw-tooth potential approach, previously implemented in CRYSTAL. High numerical accuracy can easily be achieved at relatively low cost, with the same kind of dependence on the computational parameters as for the SCF cycle. Overall, the cost of one component of the dielectric tensor is roughly the same as for the SCF cycle, and it is dominated by the calculation of two-electron four-center integrals.

  13. DYNA3D: A nonlinear, explicit, three-dimensional finite element code for solid and structural mechanics, User manual. Revision 1

    SciTech Connect

    Whirley, R.G.; Engelmann, B.E.

    1993-11-01

    This report is the User Manual for the 1993 version of DYNA3D, and also serves as a User Guide. DYNA3D is a nonlinear, explicit, finite element code for analyzing the transient dynamic response of three-dimensional solids and structures. The code is fully vectorized and is available on several computer platforms. DYNA3D includes solid, shell, beam, and truss elements to allow maximum flexibility in modeling physical problems. Many material models are available to represent a wide range of material behavior, including elasticity, plasticity, composites, thermal effects, and rate dependence. In addition, DYNA3D has a sophisticated contact interface capability, including frictional sliding and single surface contact. Rigid materials provide added modeling flexibility. A material model driver with interactive graphics display is incorporated into DYNA3D to permit accurate modeling of complex material response based on experimental data. Along with the DYNA3D Example Problem Manual, this document provides the information necessary to apply DYNA3D to solve a wide range of engineering analysis problems.

  14. Comparison of the Aerospace Systems Test Reactor loss-of-coolant test data with predictions of the 3D-AIRLOCA code

    SciTech Connect

    Warinner, D.K.

    1983-01-01

    This paper compares the predictions of the revised 3D-AIRLOCA computer code to those data available from the Aerospace Systems Test Reactor's (ASTR's) loss-of-coolant-accident (LOCA) tests run in 1964. The theoretical and experimental hot-spot temperature responses compare remarkably well. In the thirteen cases studied, the irradiation powers varied from 0.4 to 8.87 MW; the irradiation times were 300, 1540, 1800, and 10/sup 4/ s. The degrees of agreement between the data and predictions provide an experimental validation of the 3D-AIRLOCA code.

  15. TFaNS Tone Fan Noise Design/Prediction System. Volume 1; System Description, CUP3D Technical Documentation and Manual for Code Developers

    NASA Technical Reports Server (NTRS)

    Topol, David A.

    1999-01-01

    TFaNS is the Tone Fan Noise Design/Prediction System developed by Pratt & Whitney under contract to NASA Lewis (presently NASA Glenn). The purpose of this system is to predict tone noise emanating from a fan stage including the effects of reflection and transmission by the rotor and stator and by the duct inlet and nozzle. These effects have been added to an existing annular duct/isolated stator noise prediction capability. TFaNS consists of: The codes that compute the acoustic properties (reflection and transmission coefficients) of the various elements and write them to files. Cup3D: Fan Noise Coupling Code that reads these files, solves the coupling problem, and outputs the desired noise predictions. AWAKEN: CFD/Measured Wake Postprocessor which reformats CFD wake predictions and/or measured wake data so it can be used by the system. This volume of the report provides technical background for TFaNS including the organization of the system and CUP3D technical documentation. This document also provides information for code developers who must write Acoustic Property Files in the CUP3D format. This report is divided into three volumes: Volume I: System Description, CUP3D Technical Documentation, and Manual for Code Developers; Volume II: User's Manual, TFaNS Vers. 1.4; Volume III: Evaluation of System Codes.

  16. Test Problems for Reactive Flow HE Model in the ALE3D Code and Limited Sensitivity Study

    SciTech Connect

    Gerassimenko, M.

    2000-03-01

    We document quick running test problems for a reactive flow model of HE initiation incorporated into ALE3D. A quarter percent change in projectile velocity changes the outcome from detonation to HE burn that dies down. We study the sensitivity of calculated HE behavior to several parameters of practical interest where modeling HE initiation with ALE3D.

  17. Electromagnetic particle-in-cell simulations of the solar wind interaction with lunar magnetic anomalies.

    PubMed

    Deca, J; Divin, A; Lapenta, G; Lembège, B; Markidis, S; Horányi, M

    2014-04-18

    We present the first three-dimensional fully kinetic and electromagnetic simulations of the solar wind interaction with lunar crustal magnetic anomalies (LMAs). Using the implicit particle-in-cell code iPic3D, we confirm that LMAs may indeed be strong enough to stand off the solar wind from directly impacting the lunar surface forming a mini-magnetosphere, as suggested by spacecraft observations and theory. In contrast to earlier magnetohydrodynamics and hybrid simulations, the fully kinetic nature of iPic3D allows us to investigate the space charge effects and in particular the electron dynamics dominating the near-surface lunar plasma environment. We describe for the first time the interaction of a dipole model centered just below the lunar surface under plasma conditions such that only the electron population is magnetized. The fully kinetic treatment identifies electromagnetic modes that alter the magnetic field at scales determined by the electron physics. Driven by strong pressure anisotropies, the mini-magnetosphere is unstable over time, leading to only temporal shielding of the surface underneath. Future human exploration as well as lunar science in general therefore hinges on a better understanding of LMAs.

  18. Ab Initio Petaflop-scale Particle-in-Cell Simulation of Laser-Plasma Interaction

    NASA Astrophysics Data System (ADS)

    Albright, Brian

    2008-11-01

    Large three-dimensional (3D) particle-in-cell (PIC) simulations have been performed using the VPIC code on some of the world's largest supercomputers, including the Roadrunner supercomputer, the first machine capable of a petaflop/s. These simulations have revealed the complex physical mechanisms underlying laser-plasma interactions and show an emerging universal picture of nonlinear saturation of LPI in the kinetic regime. Moreover, with the advent of peta-scale computing, we are entering an era of ``at-scale'' modeling necessary to understand the essential nonlinearity of LPI in solitary laser speckles, the building-blocks of multi-speckle beams. Under NIF-relevant conditions, stimulated Raman scattering (SRS) vs. speckle intensity shows a sharp onset at a threshold intensity (below linear estimates) and saturation at higher intensity, as validated in Trident experiments. Wavefront bowing of electron plasma waves (EPW) from trapped electron nonlinear frequency shift and amplitude-dependent damping is observed in 3D. This is followed by trapped particle modulational instability, which evolves nonlinearly into self-focusing, rapid transverse EPW phase variation, increased loss of trapped electrons, and EPW damping. In 3D, EPW turbulence may also exhibit loss of coherence through azimuthal filamentation. This reduction of source coherence for backscattered light and increased damping limit how much backscatter can obtain in a speckle. In addition, 3D modeling of novel ultraintense laser-ion acceleration mechanisms will be shown. Collaborators: L. Yin, K. J. Bowers, B. Bergen, D. S. Montgomery, J. L. Kline, H. A. Rose, B. M. Hegelich, K. A. Flippo, J. C. Fern'andez.

  19. A multiblock/multizone code (PAB 3D-v2) for the three-dimensional Navier-Stokes equations: Preliminary applications

    NASA Technical Reports Server (NTRS)

    Abdol-Hamid, Khaled S.

    1990-01-01

    The development and applications of multiblock/multizone and adaptive grid methodologies for solving the three-dimensional simplified Navier-Stokes equations are described. Adaptive grid and multiblock/multizone approaches are introduced and applied to external and internal flow problems. These new implementations increase the capabilities and flexibility of the PAB3D code in solving flow problems associated with complex geometry.

  20. Numerical model of water flow and solute accumulation in vertisols using HYDRUS 2D/3D code

    NASA Astrophysics Data System (ADS)

    Weiss, Tomáš; Dahan, Ofer; Turkeltub, Tuvia

    2015-04-01

    boundary to the wall of the crack (so that the solute can accumulate due to evaporation on the crack block wall, and infiltrating fresh water can push the solute further down) - in order to do so, HYDRUS 2D/3D code had to be modified by its developers. Unconventionally, the main fitting parameters were: parameter a and n in the soil water retention curve and saturated hydraulic conductivity. The amount of infiltrated water (within a reasonable range), the infiltration function in the crack and the actual evaporation from the crack were also used as secondary fitting parameters. The model supports the previous findings that significant amount (~90%) of water from rain events must infiltrate through the crack. It was also noted that infiltration from the crack has to be increasing with depth and that the highest infiltration rate should be somewhere between 1-3m. This paper suggests a new way how to model vertisols in semi-arid regions. It also supports the previous findings about vertisols: especially, the utmost importance of soil cracks as preferential pathways for water and contaminants and soil cracks as deep evaporators.

  1. Conformal Electromagnetic Particle in Cell: A Review

    SciTech Connect

    Meierbachtol, Collin S.; Greenwood, Andrew D.; Verboncoeur, John P.; Shanker, Balasubramaniam

    2015-10-26

    We review conformal (or body-fitted) electromagnetic particle-in-cell (EM-PIC) numerical solution schemes. Included is a chronological history of relevant particle physics algorithms often employed in these conformal simulations. We also provide brief mathematical descriptions of particle-tracking algorithms and current weighting schemes, along with a brief summary of major time-dependent electromagnetic solution methods. Several research areas are also highlighted for recommended future development of new conformal EM-PIC methods.

  2. Global gyrokinetic particle-in-cell simulations of internal kink instabilities

    SciTech Connect

    Mishchenko, Alexey; Zocco, Alessandro

    2012-12-15

    Internal kink instabilities have been studied in straight tokamak geometry employing an electromagnetic gyrokinetic particle-in-cell (PIC) code. The ideal-MHD internal kink mode and the collisionless m=1 tearing mode have been successfully simulated with the PIC code. Diamagnetic effects on the internal kink modes have also been investigated.

  3. Magnetohydrodynamics with Embedded Particle-in-Cell Simulation of Mercury's Magnetosphere

    NASA Astrophysics Data System (ADS)

    Chen, Y.; Toth, G.; Jia, X.; Gombosi, T. I.; Markidis, S.

    2015-12-01

    Mercury's magnetosphere is much more dynamic than other planetary magnetospheres because of Mercury's weak intrinsic magnetic field and its proximity to the Sun. Magnetic reconnection and Kelvin-Helmholtz phenomena occur in Mercury's magnetopause and magnetotail at higher frequencies than in other planetary magnetosphere. For instance, chains of flux transfer events (FTEs) on the magnetopause, have been frequentlyobserved by the the MErcury Surface, Space ENvironment, GEochemistry and Ranging (MESSENGER) spacecraft (Slavin et al., 2012). Because ion Larmor radius is comparable to typical spatial scales in Mercury's magnetosphere, finite Larmor radius effects need to be accounted for. In addition, it is important to take in account non-ideal dissipation mechanisms to accurately describe magnetic reconnection. A kinetic approach allows us to model these phenomena accurately. However, kinetic global simulations, even for small-size magnetospheres like Mercury's, are currently unfeasible because of the high computational cost. In this work, we carry out global simulations of Mercury's magnetosphere with the recently developed MHD-EPIC model, which is a two-way coupling of the extended magnetohydrodynamic (XMHD) code BATS-R-US with the implicit Particle-in-Cell (PIC) model iPIC3D. The PIC model can cover the regions where kinetic effects are most important, such as reconnection sites. The BATS-R-US code, on the other hand, can efficiently handle the rest of the computational domain where the MHD or Hall MHD description is sufficient. We will present our preliminary results and comparison with MESSENGER observations.

  4. NIKE3D: an implicit, finite-deformation, finite element code for analyzing the static and dynamic response of three-dimensional solids

    SciTech Connect

    Hallquist, J.O.

    1981-01-01

    A user's manual is provided for NIKE3D, a fully implicit three-dimensional finite element code for analyzing the large deformation static and dynamic response of inelastic solids. A contact-impact algorithm permits gaps and sliding along material interfaces. By a specialization of this algorithm, such interfaces can be rigidly tied to admit variable zoning without the need of transition regions. Spatial discretization is achieved by the use of 8-node constant pressure solid elements. Bandwidth minimization is optional. Post-processors for NIKE3D include GRAPE for plotting deformed shapes and stress contours and DYNAP for plotting time histories.

  5. TART 2000: A Coupled Neutron-Photon, 3-D, Combinatorial Geometry, Time Dependent, Monte Carlo Transport Code

    SciTech Connect

    Cullen, D.E

    2000-11-22

    TART2000 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo radiation transport code. This code can run on any modern computer. It is a complete system to assist you with input Preparation, running Monte Carlo calculations, and analysis of output results. TART2000 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART2000 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART2000 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART2000 and its data files.

  6. TART98 a coupled neutron-photon 3-D, combinatorial geometry time dependent Monte Carlo Transport code

    SciTech Connect

    Cullen, D E

    1998-11-22

    TART98 is a coupled neutron-photon, 3 Dimensional, combinatorial geometry, time dependent Monte Carlo radiation transport code. This code can run on any modern computer. It is a complete system to assist you with input preparation, running Monte Carlo calculations, and analysis of output results. TART98 is also incredibly FAST; if you have used similar codes, you will be amazed at how fast this code is compared to other similar codes. Use of the entire system can save you a great deal of time and energy. TART98 is distributed on CD. This CD contains on-line documentation for all codes included in the system, the codes configured to run on a variety of computers, and many example problems that you can use to familiarize yourself with the system. TART98 completely supersedes all older versions of TART, and it is strongly recommended that users only use the most recent version of TART98 and its data files.

  7. A two-level space-time color-coding method for 3D measurements using structured light

    NASA Astrophysics Data System (ADS)

    Xue, Qi; Wang, Zhao; Huang, Junhui; Gao, Jianmin; Qi, Zhaoshuai

    2015-11-01

    Color-coding methods have significantly improved the measurement efficiency of structured light systems. However, some problems, such as color crosstalk and chromatic aberration, decrease the measurement accuracy of the system. A two-level space-time color-coding method is thus proposed in this paper. The method, which includes a space-code level and a time-code level, is shown to be reliable and efficient. The influence of chromatic aberration is completely mitigated when using this method. Additionally, a self-adaptive windowed Fourier transform is used to eliminate all color crosstalk components. Theoretical analyses and experiments have shown that the proposed coding method solves the problems of color crosstalk and chromatic aberration effectively. Additionally, the method guarantees high measurement accuracy which is very close to the measurement accuracy using monochromatic coded patterns.

  8. Neural coding of 3D features of objects for hand action in the parietal cortex of the monkey.

    PubMed Central

    Sakata, H; Taira, M; Kusunoki, M; Murata, A; Tanaka, Y; Tsutsui, K

    1998-01-01

    In our previous studies of hand manipulation task-related neurons, we found many neurons of the parietal association cortex which responded to the sight of three-dimensional (3D) objects. Most of the task-related neurons in the AIP area (the lateral bank of the anterior intraparietal sulcus) were visually responsive and half of them responded to objects for manipulation. Most of these neurons were selective for the 3D features of the objects. More recently, we have found binocular visual neurons in the lateral bank of the caudal intraparietal sulcus (c-IPS area) that preferentially respond to a luminous bar or place at a particular orientation in space. We studied the responses of axis-orientation selective (AOS) neurons and surface-orientation selective (SOS) neurons in this area with stimuli presented on a 3D computer graphics display. The AOS neurons showed a stronger response to elongated stimuli and showed tuning to the orientation of the longitudinal axis. Many of them preferred a tilted stimulus in depth and appeared to be sensitive to orientation disparity and/or width disparity. The SOS neurons showed a stronger response to a flat than to an elongated stimulus and showed tuning to the 3D orientation of the surface. Their responses increased with the width or length of the stimulus. A considerable number of SOS neurons responded to a square in a random dot stereogram and were tuned to orientation in depth, suggesting their sensitivity to the gradient of disparity. We also found several SOS neurons that responded to a square with tilted or slanted contours, suggesting their sensitivity to orientation disparity and/or width disparity. Area c-IPS is likely to send visual signals of the 3D features of an object to area AIP for the visual guidance of hand actions. PMID:9770229

  9. An improved iteration loop for the three dimensional quasi-static particle-in-cell algorithm: QuickPIC

    SciTech Connect

    An, Weiming; Decyk, Viktor K.; Mori, Warren B.; Antonsen, Thomas M.

    2013-10-01

    We present improvements to the three-dimensional (3D) quasi-static particle-in-cell (PIC) algorithm, which is used to efficiently model short-pulse laser and particle beam–plasma interactions. In this algorithm the fields including the index of refraction created by a static particle/laser beam are calculated. These fields are then used to advance the particle/laser beam forward in time (distance). For a 3D quasi-static code, calculating the wake fields is done using a two-dimensional (2D) PIC code where the time variable is ξ=ct-z and z is the propagation direction of the particle/laser beam. When calculating the wake, the fields, particle positions and momenta are not naturally time centered so an iterative predictor corrector loop is required. In the previous iterative loop in QuickPIC (currently the only 3D quasi-static PIC code), the field equations are derived using the Lorentz gauge. Here we describe a new algorithm which uses gauge independent field equations. It is found that with this new algorithm, the results converge to the results from fully explicitly PIC codes with far fewer iterations (typically 1 iteration as compared to 2–8) for a wide range of problems. In addition, we describe a new deposition scheme for directly depositing the time derivative of the current that is needed in one of the field equations. The new deposition scheme does not require message passing for the particles inside the iteration loop, which greatly improves the speed for parallelized calculations. Comparisons of results from the new and old algorithms and to fully explicit PIC codes are also presented.

  10. A new type of color-coded light structures for an adapted and rapid determination of point correspondences for 3D reconstruction

    NASA Astrophysics Data System (ADS)

    Caulier, Yannick; Bernhard, Luc; Spinnler, Klaus

    2011-05-01

    This paper proposes a new type of color coded light structures for the inspection of complex moving objects. The novelty of the methods relies on the generation of free-form color patterns permitting the projection of color structures adapted to the geometry of the surfaces to be characterized. The point correspondence determination algorithm consists of a stepwise procedure involving simple and computationally fast methods. The algorithm is therefore robust against varying recording conditions typically arising in real-time quality control environments and can be further integrated for industrial inspection purposes. The proposed approach is validated and compared on the basis of different experimentations concerning the 3D surface reconstruction by projecting adapted spatial color coded patterns. It is demonstrated that in case of certain inspection requirements, the method permits to code more reference points that similar color coded matrix methods.

  11. Application of the RNS3D Code to a Circular-Rectangular Transition Duct With and Without Inlet Swirl and Comparison with Experiments

    NASA Technical Reports Server (NTRS)

    Cavicchi, Richard H.

    1999-01-01

    Circular-rectangular transition ducts are used between engine exhausts and nozzles with rectangular cross sections that are designed for high performance aircraft. NASA Glenn Research Center has made experimental investigations of a series of circular-rectangular transition ducts to provide benchmark flow data for comparison with numerical calculations. These ducts are all designed with superellipse cross sections to facilitate grid generation. In response to this challenge, the three-dimensional RNS3D code has been applied to one of these transition ducts. This particular duct has a length-to-inlet diameter ratio of 1.5 and an exit-plane aspect ratio of 3.0. The inlet Mach number is 0.35. Two GRC experiments and the code were run for this duct without inlet swirl. One GRC experiment and the code were also run with inlet swirl. With no inlet swirl the code was successful in predicting pressures and secondary flow conditions, including a pair of counter-rotating vortices at both sidewalls of the exit plane. All these phenomena have been reported from the two GRC experiments. However, these vortices were suppressed in the one experiment when inlet swirl was used; whereas the RNS3D code still predicted them. The experiment was unable to provide data near the sidewalls, the very region where the vortices were predicted.

  12. SummitView 1.0: a code to automatically generate 3D solid models of surface micro-machining based MEMS designs.

    SciTech Connect

    McBride, Cory L. (Elemental Technologies, American Fort, UT); Yarberry, Victor R.; Schmidt, Rodney Cannon; Meyers, Ray J.

    2006-11-01

    This report describes the SummitView 1.0 computer code developed at Sandia National Laboratories. SummitView is designed to generate a 3D solid model, amenable to visualization and meshing, that represents the end state of a microsystem fabrication process such as the SUMMiT (Sandia Ultra-Planar Multilevel MEMS Technology) V process. Functionally, SummitView performs essentially the same computational task as an earlier code called the 3D Geometry modeler [1]. However, because SummitView is based on 2D instead of 3D data structures and operations, it has significant speed and robustness advantages. As input it requires a definition of both the process itself and the collection of individual 2D masks created by the designer and associated with each of the process steps. The definition of the process is contained in a special process definition file [2] and the 2D masks are contained in MEM format files [3]. The code is written in C++ and consists of a set of classes and routines. The classes represent the geometric data and the SUMMiT V process steps. Classes are provided for the following process steps: Planar Deposition, Planar Etch, Conformal Deposition, Dry Etch, Wet Etch and Release Etch. SummitView is built upon the 2D Boolean library GBL-2D [4], and thus contains all of that library's functionality.

  13. Solwnd: A 3D Compressible MHD Code for Solar Wind Studies. Version 1.0: Cartesian Coordinates

    NASA Technical Reports Server (NTRS)

    Deane, Anil E.

    1996-01-01

    Solwnd 1.0 is a three-dimensional compressible MHD code written in Fortran for studying the solar wind. Time-dependent boundary conditions are available. The computational algorithm is based on Flux Corrected Transport and the code is based on the existing code of Zalesak and Spicer. The flow considered is that of shear flow with incoming flow that perturbs this base flow. Several test cases corresponding to pressure balanced magnetic structures with velocity shear flow and various inflows including Alfven waves are presented. Version 1.0 of solwnd considers a rectangular Cartesian geometry. Future versions of solwnd will consider a spherical geometry. Some discussions of this issue is presented.

  14. Turbulence dissipation challenge: particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Roytershteyn, V.; Karimabadi, H.; Omelchenko, Y.; Germaschewski, K.

    2015-12-01

    We discuss application of three particle in cell (PIC) codes to the problems relevant to turbulence dissipation challenge. VPIC is a fully kinetic code extensively used to study a variety of diverse problems ranging from laboratory plasmas to astrophysics. PSC is a flexible fully kinetic code offering a variety of algorithms that can be advantageous to turbulence simulations, including high order particle shapes, dynamic load balancing, and ability to efficiently run on Graphics Processing Units (GPUs). Finally, HYPERS is a novel hybrid (kinetic ions+fluid electrons) code, which utilizes asynchronous time advance and a number of other advanced algorithms. We present examples drawn both from large-scale turbulence simulations and from the test problems outlined by the turbulence dissipation challenge. Special attention is paid to such issues as the small-scale intermittency of inertial range turbulence, mode content of the sub-proton range of scales, the formation of electron-scale current sheets and the role of magnetic reconnection, as well as numerical challenges of applying PIC codes to simulations of astrophysical turbulence.

  15. FACET: a radiation view factor computer code for axisymmetric, 2D planar, and 3D geometries with shadowing

    SciTech Connect

    Shapiro, A.B.

    1983-08-01

    The computer code FACET calculates the radiation geometric view factor (alternatively called shape factor, angle factor, or configuration factor) between surfaces for axisymmetric, two-dimensional planar and three-dimensional geometries with interposed third surface obstructions. FACET was developed to calculate view factors for input to finite-element heat-transfer analysis codes. The first section of this report is a brief review of previous radiation-view-factor computer codes. The second section presents the defining integral equation for the geometric view factor between two surfaces and the assumptions made in its derivation. Also in this section are the numerical algorithms used to integrate this equation for the various geometries. The third section presents the algorithms used to detect self-shadowing and third-surface shadowing between the two surfaces for which a view factor is being calculated. The fourth section provides a user's input guide followed by several example problems.

  16. Estimation of aortic valve leaflets from 3D CT images using local shape dictionaries and linear coding

    NASA Astrophysics Data System (ADS)

    Liang, Liang; Martin, Caitlin; Wang, Qian; Sun, Wei; Duncan, James

    2016-03-01

    Aortic valve (AV) disease is a significant cause of morbidity and mortality. The preferred treatment modality for severe AV disease is surgical resection and replacement of the native valve with either a mechanical or tissue prosthetic. In order to develop effective and long-lasting treatment methods, computational analyses, e.g., structural finite element (FE) and computational fluid dynamic simulations, are very effective for studying valve biomechanics. These computational analyses are based on mesh models of the aortic valve, which are usually constructed from 3D CT images though many hours of manual annotation, and therefore an automatic valve shape reconstruction method is desired. In this paper, we present a method for estimating the aortic valve shape from 3D cardiac CT images, which is represented by triangle meshes. We propose a pipeline for aortic valve shape estimation which includes novel algorithms for building local shape dictionaries and for building landmark detectors and curve detectors using local shape dictionaries. The method is evaluated on real patient image dataset using a leave-one-out approach and achieves an average accuracy of 0.69 mm. The work will facilitate automatic patient-specific computational modeling of the aortic valve.

  17. Development of a 3D FEL code for the simulation of a high-gain harmonic generation experiment.

    SciTech Connect

    Biedron, S. G.

    1999-02-26

    Over the last few years, there has been a growing interest in self-amplified spontaneous emission (SASE) free-electron lasers (FELs) as a means for achieving a fourth-generation light source. In order to correctly and easily simulate the many configurations that have been suggested, such as multi-segmented wigglers and the method of high-gain harmonic generation, we have developed a robust three-dimensional code. The specifics of the code, the comparison to the linear theory as well as future plans will be presented.

  18. Mariage des maillages: A new 3D general relativistic hydro code for simulation of gravitational waves from core-collapses.

    NASA Astrophysics Data System (ADS)

    Novak, Jerome; Dimmelmeier, Harrald; Font-Roda, Jose A.

    2004-12-01

    We present a new three-dimensional general relativistic hydrodynamics code which can be applied to study stellar core collapses and the resulting gravitational radiation. This code uses two different numerical techniques to solve partial differential equations arising in the model: high-resolution shock capturing (HRSC) schemes for the evolution of hydrodynamic quantities and spectral methods for the solution of Einstein equations. The equations are written and solved using spherical polar coordinates, best suited to stellar topology. Einstein equations are formulated within the 3+1 formalism and conformal flat condition (CFC) for the 3-metric and gravitational radiation is extracted using Newtonian quadrupole formulation.

  19. NIKE3D a nonlinear, implicit, three-dimensional finite element code for solid and structural mechanics user's manual update summary

    SciTech Connect

    Puso, M; Maker, B N; Ferencz, R M; Hallquist, J O

    2000-03-24

    This report provides the NIKE3D user's manual update summary for changes made from version 3.0.0 April 24, 1995 to version 3.3.6 March 24,2000. The updates are excerpted directly from the code printed output file (hence the Courier font and formatting), are presented in chronological order and delineated by NIKE3D version number. NIKE3D is a fully implicit three-dimensional finite element code for analyzing the finite strain static and dynamic response of inelastic solids, shells, and beams. Spatial discretization is achieved by the use of 8-node solid elements, 2-node truss and beam elements, and 4-node membrane and shell elements. Thirty constitutive models are available for representing a wide range of elastic, plastic, viscous, and thermally dependent material behavior. Contact-impact algorithms permit gaps, frictional sliding, and mesh discontinuities along material interfaces. Several nonlinear solution strategies are available, including Full-, Modified-, and Quasi-Newton methods. The resulting system of simultaneous linear equations is either solved iteratively by an element-by-element method, or directly by a direct factorization method.

  20. An open-source Matlab code package for improved rank-reduction 3D seismic data denoising and reconstruction

    NASA Astrophysics Data System (ADS)

    Chen, Yangkang; Huang, Weilin; Zhang, Dong; Chen, Wei

    2016-10-01

    Simultaneous seismic data denoising and reconstruction is a currently popular research subject in modern reflection seismology. Traditional rank-reduction based 3D seismic data denoising and reconstruction algorithm will cause strong residual noise in the reconstructed data and thus affect the following processing and interpretation tasks. In this paper, we propose an improved rank-reduction method by modifying the truncated singular value decomposition (TSVD) formula used in the traditional method. The proposed approach can help us obtain nearly perfect reconstruction performance even in the case of low signal-to-noise ratio (SNR). The proposed algorithm is tested via one synthetic and field data examples. Considering that seismic data interpolation and denoising source packages are seldom in the public domain, we also provide a program template for the rank-reduction based simultaneous denoising and reconstruction algorithm by providing an open-source Matlab package.

  1. Time-Dependent Distribution Functions in C-Mod Calculated with the CQL3D-Hybrid-FOW, AORSA Full-Wave, and DC Lorentz Codes

    NASA Astrophysics Data System (ADS)

    Harvey, R. W. (Bob); Petrov, Yu. V.; Jaeger, E. F.; Berry, L. A.; Bonoli, P. T.; Bader, A.

    2015-11-01

    A time-dependent simulation of C-Mod pulsed ICRF power is made calculating minority hydrogen ion distribution functions with the CQL3D-Hybrid-FOW finite-orbit-width Fokker-Planck code. ICRF fields are calculated with the AORSA full wave code, and RF diffusion coefficients are obtained from these fields using the DC Lorentz gyro-orbit code. Prior results with a zero-banana-width simulation using the CQL3D/AORSA/DC time-cycles showed a pronounced enhancement of the H distribution in the perpendicular velocity direction compared to results obtained from Stix's quasilinear theory, in general agreement with experiment. The present study compares the new FOW results, including relevant gyro-radius effects, to determine the importance of these effects on the the NPA synthetic diagnostic time-dependence. The new NPA results give increased agreement with experiment, particularly in the ramp-down time after the ICRF pulse. Funded, through subcontract with Massachusetts Institute of Technology, by USDOE sponsored SciDAC Center for Simulation of Wave-Plasma Interactions.

  2. Revisiting the TORT Solutions to the NEA Suite of Benchmarks for 3D Transport Methods and Codes Over a Range in Parameter Space

    SciTech Connect

    Bekar, Kursat B; Azmy, Yousry

    2009-01-01

    Improved TORT solutions to the 3D transport codes' suite of benchmarks exercise are presented in this study. Preliminary TORT solutions to this benchmark indicate that the majority of benchmark quantities for most benchmark cases are computed with good accuracy, and that accuracy improves with model refinement. However, TORT fails to compute accurate results for some benchmark cases with aspect ratios drastically different from 1, possibly due to ray effects. In this work, we employ the standard approach of splitting the solution to the transport equation into an uncollided flux and a fully collided flux via the code sequence GRTUNCL3D and TORT to mitigate ray effects. The results of this code sequence presented in this paper show that the accuracy of most benchmark cases improved substantially. Furthermore, the iterative convergence problems reported for the preliminary TORT solutions have been resolved by bringing the computational cells' aspect ratio closer to unity and, more importantly, by using 64-bit arithmetic precision in the calculation sequence. Results of this study are also reported.

  3. On the numerical simulation of the ablative Rayleigh-Taylor instability in laser-driven ICF targets using the FastRad3D code

    NASA Astrophysics Data System (ADS)

    Bates, Jason; Schmitt, Andrew; Zalesak, Steve

    2015-11-01

    The ablative Rayleigh-Taylor (RT) instability is a key factor in the performance of directly-drive inertial-confinement-fusion (ICF) targets. Although this subject has been studied for quite some time, the accurate simulation of the ablative RT instability has proven to be a challenging task for many radiation hydrodynamics codes, particularly when it comes to capturing the ablatively-stabilized region of the linear dispersion spectrum and modeling ab initio perturbations. In this poster, we present results from recent two-dimensional numerical simulations of the ablative RT instability that were performed using the Eulerian code FastRad3D at the U.S. Naval Research Laboratory. We consider both planar and spherical geometries, low and moderate-Z target materials, different laser wavelengths and where possible, compare our findings with experiment data, linearized theory and/or results from other radiation hydrodynamics codes. Overall, we find that FastRad3D is capable of simulating the ablative RT instability quite accurately, although some uncertainties/discrepancies persist. We discuss these issues, as well as some of the numerical challenges associated with modeling this class of problems. Work supported by U.S. DOE/NNSA.

  4. TRAC code assessment using data from SCTF Core-III, a large-scale 2D/3D facility

    SciTech Connect

    Boyack, B.E.; Shire, P.R.; Harmony, S.C.; Rhee, G.

    1988-01-01

    Nine tests from the SCTF Core-III configuration have been analyzed using TRAC-PF1/MOD1. The objectives of these assessment activities were to obtain a better understanding of the phenomena occurring during the refill and reflood phases of a large-break loss-of-coolant accident, to determine the accuracy to which key parameters are calculated, and to identify deficiencies in key code correlations and models that provide closure for the differential equations defining thermal-hydraulic phenomena in pressurized water reactors. Overall, the agreement between calculated and measured values of peak cladding temperature is reasonable. In addition, TRAC adequately predicts many of the trends observed in both the integral effect and separate effect tests conducted in SCTF Core-III. The importance of assessment activities that consider potential contributors to discrepancies between the measured and calculated results arising from three sources are described as those related to (1) knowledge about the facility configuration and operation, (2) facility modeling for code input, and (3) deficiencies in code correlations and models. An example is provided. 8 refs., 7 figs., 2 tabs.

  5. P1 adaptation of TRIPOLI-4® code for the use of 3D realistic core multigroup cross section generation

    NASA Astrophysics Data System (ADS)

    Cai, Li; Pénéliau, Yannick; Diop, Cheikh M.; Malvagi, Fausto

    2014-06-01

    In this paper, we discuss some improvements we recently implemented in the Monte-Carlo code TRIPOLI-4® associated with the homogenization and collapsing of subassemblies cross sections. The improvement offered us another approach to get critical multigroup cross sections with Monte-Carlo method. The new calculation method in TRIPOLI-4® tries to ensure the neutronic balances, the multiplicative factors and the critical flux spectra for some realistic geometries. We make it by at first improving the treatment of the energy transfer probability, the neutron excess weight and the neutron fission spectrum. This step is necessary for infinite geometries. The second step which will be enlarged in this paper is aimed at better dealing with the multigroup anisotropy distribution law for finite geometries. Usually, Monte-Carlo homogenized multi-group cross sections are validated within a core calculation by a deterministic code. Here, the validation of multigroup constants will also be carried out by Monte-Carlo core calculation code. Different subassemblies are tested with the new collapsing method, especially for the fast neutron reactors subassemblies.

  6. Lifting scheme-based method for joint coding 3D stereo digital cinema with luminace correction and optimized prediction

    NASA Astrophysics Data System (ADS)

    Darazi, R.; Gouze, A.; Macq, B.

    2009-01-01

    Reproducing a natural and real scene as we see in the real world everyday is becoming more and more popular. Stereoscopic and multi-view techniques are used for this end. However due to the fact that more information are displayed requires supporting technologies such as digital compression to ensure the storage and transmission of the sequences. In this paper, a new scheme for stereo image coding is proposed. The original left and right images are jointly coded. The main idea is to optimally exploit the existing correlation between the two images. This is done by the design of an efficient transform that reduces the existing redundancy in the stereo image pair. This approach was inspired by Lifting Scheme (LS). The novelty in our work is that the prediction step is been replaced by an hybrid step that consists in disparity compensation followed by luminance correction and an optimized prediction step. The proposed scheme can be used for lossless and for lossy coding. Experimental results show improvement in terms of performance and complexity compared to recently proposed methods.

  7. Assessment of a 3-D boundary layer code to predict heat transfer and flow losses in a turbine

    NASA Technical Reports Server (NTRS)

    Vatsa, V. N.

    1983-01-01

    The prediction of the complete flow field in a turbine passage is an extremely difficult task due to the complex three dimensional pattern which contains separation and attachment lines, a saddle point and horseshoe vortex. Whereas, in principle such a problem can be solved using full Navier-Stokes equations, in reality methods based on a Navier-Stokes solution procedure encounter difficulty in accurately predicting surface quantities (e.g., heat transfer) due to grid limitations imposed by the speed and size of the existing computers. On the other hand the overall problem is strongly three dimensional and too complex to be analyzed by the current design methods based on inviscid and/or viscous strip theories. Thus there is a strong need for enhancing the current prediction techniques through inclusion of 3-D viscous effects. A potentially simple and cost effective way to achieve this is to use a prediction method based on three dimensional boundary layer (3-DBL) theory. The major objective of this program is to assess the applicability of such a 3-DBL approach for the prediction of heat loads, boundary layer growth, pressure losses and streamline skewing in critical areas of a turbine passage. A brief discussion of the physical problem addressed here along with the overall approach is presented.

  8. A fully-neoclassical finite-orbit-width version of the CQL3D Fokker-Planck code

    NASA Astrophysics Data System (ADS)

    Petrov, Yu V.; Harvey, R. W.

    2016-11-01

    The time-dependent bounce-averaged CQL3D flux-conservative finite-difference Fokker-Planck equation (FPE) solver has been upgraded to include finite-orbit-width (FOW) capabilities which are necessary for an accurate description of neoclassical transport, losses to the walls, and transfer of particles, momentum, and heat to the scrape-off layer. The FOW modifications are implemented in the formulation of the neutral beam source, collision operator, RF quasilinear diffusion operator, and in synthetic particle diagnostics. The collisional neoclassical radial transport appears naturally in the FOW version due to the orbit-averaging of local collision coefficients coupled with transformation coefficients from local (R, Z) coordinates along each guiding-center orbit to the corresponding midplane computational coordinates, where the FPE is solved. In a similar way, the local quasilinear RF diffusion terms give rise to additional radial transport of orbits. We note that the neoclassical results are obtained for ‘full’ orbits, not dependent on a common small orbit-width approximation. Results of validation tests for the FOW version are also presented.

  9. Microdosimetry of alpha particles for simple and 3D voxelised geometries using MCNPX and Geant4 Monte Carlo codes.

    PubMed

    Elbast, M; Saudo, A; Franck, D; Petitot, F; Desbrée, A

    2012-07-01

    Microdosimetry using Monte Carlo simulation is a suitable technique to describe the stochastic nature of energy deposition by alpha particle at cellular level. Because of its short range, the energy imparted by this particle to the targets is highly non-uniform. Thus, to achieve accurate dosimetric results, the modelling of the geometry should be as realistic as possible. The objectives of the present study were to validate the use of the MCNPX and Geant4 Monte Carlo codes for microdosimetric studies using simple and three-dimensional voxelised geometry and to study their limit of validity in this last case. To that aim, the specific energy (z) deposited in the cell nucleus, the single-hit density of specific energy f(1)(z) and the mean-specific energy were calculated. Results show a good agreement when compared with the literature using simple geometry. The maximum percentage difference found is <6 %. For voxelised phantom, the study of the voxel size highlighted that the shape of the curve f(1)(z) obtained with MCNPX for <1 µm voxel size presents a significant difference with the shape of non-voxelised geometry. When using Geant4, little differences are observed whatever the voxel size is. Below 1 µm, the use of Geant4 is required. However, the calculation time is 10 times higher with Geant4 than MCNPX code in the same conditions.

  10. Lagrangian MHD Particle-in-Cell simulations of coronal interplanetary shocks driven by observations

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Bacchini, Fabio; Bemporad, Alessandro; Susino, Roberto; Olshevskyi, Vyacheslav

    2016-04-01

    In this work, we compare the spatial distribution of the plasma parameters along the June 11, 1999 CME-driven shock front with the results obtained from a CME-like event simulated with the FLIPMHD3D code, based on the FLIP-MHD Particle-in-Cell (PiC) method. The observational data are retrieved from the combination of white-light (WL) coronagraphic data (for the upstream values) and the application of the Rankine-Hugoniot (RH) equations (for the downstream values). The comparison shows a higher compression ratio X and Alfvénic Mach number MA at the shock nose, and a stronger magnetic field deflection d towards the flanks, in agreement with observations. Then, we compare the spatial distribution of MA with the profiles obtained from the solutions of the shock adiabatic equation relating MA, X, and the angle between the upstream magnetic field and the shock front normal for the special cases of parallel and perpendicular shock, and with a semi-empirical expression for a generically oblique shock. The semi-empirical curve approximates the actual values of MA very well, if the effects of a non-negligible shock thickness and plasma-to magnetic pressure ratio are taken into account throughout the computation. Moreover, the simulated shock turns out to be supercritical at the nose and sub-critical at the flanks. Finally, we develop a new 1D Lagrangian ideal MHD method based on the GrAALE code, to simulate the ion-electron temperature decoupling due to the shock transit. Two models are used, a simple solar wind model and a variable-gamma model. Both produce results in agreement with observations, the second one being capable of introducing the physics responsible for the additional electron heating due to secondary effects (collisions, Alfvén waves, etc.). Work supported by the European Commission under the SWIFF project (swiff.eu)

  11. Comparison of the 3D VERB Code Simulations of the Dynamic Evolution of the Outer and Inner Radiation Belts With the Reanalysis Obtained from Observations on Multiple Spacecraft

    NASA Astrophysics Data System (ADS)

    Shprits, Y.; Subbotin, D.; Ni, B.; Daae, M.; Kondrashov, D. A.; Hartinger, M.; Kim, K.; Orlova, K.; Nagai, T.; Friedel, R. H.; Chen, Y.

    2010-12-01

    In this study we present simulations of the inner and outer radiation belts using the Versatile Electron Radiation Belt (VERB) accounting for radial, pitch-angle, energy, and mixed diffusion. Qusi-linear diffusion coefficients are computed using the Full Diffusion Code (FDC) due to day-side and night-side chorus waves, magneto-sonic waves, phasmaspheric hiss waves, EMIC and hiss waves in the regions of plumes, lightning generated whistlers and anthropogenic whistlers. Sensitivity simulations show that the knowledge of wave spectral properties and spacial distribution of waves is crucially important for reproducing long term observations. The 3D VERB code simulations are compared to 3D reanalysis of the radiation belt fluxes obtained by blending the predictive model with observations from LANL GEO, CRRES, Akebono, and GPS. We also discuss the initial results of coupled RCM-VERB simulations. Finally, we present a statistical analysis of radiation belt phase space density obtained from reanalysis to explore sudden drop outs of the radiation belt fluxes and location of peaks in phase space density. The application of the developed tools to future measurements on board RBSP is discussed.

  12. NASA low-speed centrifugal compressor for 3-D viscous code assessment and fundamental flow physics research

    NASA Technical Reports Server (NTRS)

    Hathaway, M. D.; Wood, J. R.; Wasserbauer, C. A.

    1991-01-01

    A low speed centrifugal compressor facility recently built by the NASA Lewis Research Center is described. The purpose of this facility is to obtain detailed flow field measurements for computational fluid dynamic code assessment and flow physics modeling in support of Army and NASA efforts to advance small gas turbine engine technology. The facility is heavily instrumented with pressure and temperature probes, both in the stationary and rotating frames of reference, and has provisions for flow visualization and laser velocimetry. The facility will accommodate rotational speeds to 2400 rpm and is rated at pressures to 1.25 atm. The initial compressor stage being tested is geometrically and dynamically representative of modern high-performance centrifugal compressor stages with the exception of Mach number levels. Preliminary experimental investigations of inlet and exit flow uniformly and measurement repeatability are presented. These results demonstrate the high quality of the data which may be expected from this facility. The significance of synergism between computational fluid dynamic analysis and experimentation throughout the development of the low speed centrifugal compressor facility is demonstrated.

  13. Magnetospheric Simulations With the Three-Dimensional Magnetohydrodynamics With Embedded Particle-in-Cell Model

    NASA Astrophysics Data System (ADS)

    Toth, G.; Jia, X.; Chen, Y.; Markidis, S.; Peng, B.; Daldorff, L. K. S.; Tenishev, V.; Borovikov, D.; Haiducek, J. D.; Gombosi, T. I.; Glocer, A.; Dorelli, J.; Lapenta, G.

    2015-12-01

    We have recently developed a new modeling capability to embed the implicit Particle-in-Cell (PIC) model iPIC3D into the BATS-R-US magnetohydrodynamic model. The PIC domain can cover the regions where kinetic effects are most important, such as reconnection sites. The BATS-R-US code, on the other hand, can efficiently handle the rest of the computational domain where the MHD or Hall MHD description is sufficient with its block-adaptive grid. The current implementation of the MHD-EPIC model allows two-way coupled simulations in two and three dimensions with multiple embedded PIC regions. The MHD and PIC grids can have different grid resolutions. The MHD variables and the moments of the PIC distribution functions are interpolated and message passed in an efficient manner through the Space Weather Modeling Framework (SWMF). Both BATS-R-US and iPIC3D are massively parallel codes fully integrated into, run by and coupled through the SWMF. We have successfully applied the MHD-EPIC code to model Ganymede's magnetosphere. Using four PIC regions we have in effect performed a fully kinetic simulation of the moon's mini-magnetosphere with a grid resolution that is about 5 times finer than the ion inertial length. The Hall MHD model provides proper boundary conditions for the four PIC regions and connects them with each other and with the inner and outer outer boundary conditions of the much larger MHD domain. We compare our results with Galileo magnetic observations and find good overall agreement with both Hall MHD and MHD-EPIC simulations. The power spectrum for the small scale fluctuations, however, agrees with the data much better for the MHD-EPIC simulation than for Hall MHD. In the MHD-EPIC simulation, unlike in the pure Hall MHD results, we also find signatures of flux transfer events (FTEs) that agree very well with the observed FTE signatures both in terms of shape and amplitudes. We will also highlight our ongoing efforts to model the magnetospheres of Mercury and

  14. Comparison of a 3-D multi-group SN particle transport code with Monte Carlo for intracavitary brachytherapy of the cervix uteri.

    PubMed

    Gifford, Kent A; Wareing, Todd A; Failla, Gregory; Horton, John L; Eifel, Patricia J; Mourtada, Firas

    2009-12-03

    A patient dose distribution was calculated by a 3D multi-group S N particle transport code for intracavitary brachytherapy of the cervix uteri and compared to previously published Monte Carlo results. A Cs-137 LDR intracavitary brachytherapy CT data set was chosen from our clinical database. MCNPX version 2.5.c, was used to calculate the dose distribution. A 3D multi-group S N particle transport code, Attila version 6.1.1 was used to simulate the same patient. Each patient applicator was built in SolidWorks, a mechanical design package, and then assembled with a coordinate transformation and rotation for the patient. The SolidWorks exported applicator geometry was imported into Attila for calculation. Dose matrices were overlaid on the patient CT data set. Dose volume histograms and point doses were compared. The MCNPX calculation required 14.8 hours, whereas the Attila calculation required 22.2 minutes on a 1.8 GHz AMD Opteron CPU. Agreement between Attila and MCNPX dose calculations at the ICRU 38 points was within +/- 3%. Calculated doses to the 2 cc and 5 cc volumes of highest dose differed by not more than +/- 1.1% between the two codes. Dose and DVH overlays agreed well qualitatively. Attila can calculate dose accurately and efficiently for this Cs-137 CT-based patient geometry. Our data showed that a three-group cross-section set is adequate for Cs-137 computations. Future work is aimed at implementing an optimized version of Attila for radiotherapy calculations.

  15. LLNL-Earth3D

    SciTech Connect

    2013-10-01

    Earth3D is a computer code designed to allow fast calculation of seismic rays and travel times through a 3D model of the Earth. LLNL is using this for earthquake location and global tomography efforts and such codes are of great interest to the Earth Science community.

  16. SPECT Imaging of 2-D and 3-D Distributed Sources with Near-Field Coded Aperture Collimation: Computer Simulation and Real Data Validation.

    PubMed

    Mu, Zhiping; Dobrucki, Lawrence W; Liu, Yi-Hwa

    The imaging of distributed sources with near-field coded aperture (CA) remains extremely challenging and is broadly considered unsuitable for single-photon emission computerized tomography (SPECT). This study proposes a novel CA SPECT reconstruction approach and evaluates the feasibilities of imaging and reconstructing distributed hot sources and cold lesions using near-field CA collimation and iterative image reconstruction. Computer simulations were designed to compare CA and pinhole collimations in two-dimensional radionuclide imaging. Digital phantoms were created and CA images of the phantoms were reconstructed using maximum likelihood expectation maximization (MLEM). Errors and the contrast-to-noise ratio (CNR) were calculated and image resolution was evaluated. An ex vivo rat heart with myocardial infarction was imaged using a micro-SPECT system equipped with a custom-made CA module and a commercial 5-pinhole collimator. Rat CA images were reconstructed via the three-dimensional (3-D) MLEM algorithm developed for CA SPECT with and without correction for a large projection angle, and 5-pinhole images were reconstructed using the commercial software provided by the SPECT system. Phantom images of CA were markedly improved in terms of image quality, quantitative root-mean-squared error, and CNR, as compared to pinhole images. CA and pinhole images yielded similar image resolution, while CA collimation resulted in fewer noise artifacts. CA and pinhole images of the rat heart were well reconstructed and the myocardial perfusion defects could be clearly discerned from 3-D CA and 5-pinhole SPECT images, whereas 5-pinhole SPECT images suffered from severe noise artifacts. Image contrast of CA SPECT was further improved after correction for the large projection angle used in the rat heart imaging. The computer simulations and small-animal imaging study presented herein indicate that the proposed 3-D CA SPECT imaging and reconstruction approaches worked reasonably

  17. Validation of 3D Code KATRIN For Fast Neutron Fluence Calculation of VVER-1000 Reactor Pressure Vessel by Ex-Vessel Measurements and Surveillance Specimens Results

    NASA Astrophysics Data System (ADS)

    Dzhalandinov, A.; Tsofin, V.; Kochkin, V.; Panferov, P.; Timofeev, A.; Reshetnikov, A.; Makhotin, D.; Erak, D.; Voloschenko, A.

    2016-02-01

    Usually the synthesis of two-dimensional and one-dimensional discrete ordinate calculations is used to evaluate neutron fluence on VVER-1000 reactor pressure vessel (RPV) for prognosis of radiation embrittlement. But there are some cases when this approach is not applicable. For example the latest projects of VVER-1000 have upgraded surveillance program. Containers with surveillance specimens are located on the inner surface of RPV with fast neutron flux maximum. Therefore, the synthesis approach is not suitable enough for calculation of local disturbance of neutron field in RPV inner surface behind the surveillance specimens because of their complicated and heterogeneous structure. In some cases the VVER-1000 core loading consists of fuel assemblies with different fuel height and the applicability of synthesis approach is also ambiguous for these fuel cycles. Also, the synthesis approach is not enough correct for the neutron fluence estimation at the RPV area above core top. Because of these reasons only the 3D neutron transport codes seem to be satisfactory for calculation of neutron fluence on the VVER-1000 RPV. The direct 3D calculations are also recommended by modern regulations.

  18. Validation of the RPLUS3D Code for Supersonic Inlet Applications Involving Three-Dimensional Shock Wave-Boundary Layer Interactions

    NASA Technical Reports Server (NTRS)

    Kapoor, Kamlesh; Anderson, Bernhard H.; Shaw, Robert J.

    1994-01-01

    A three-dimensional computational fluid dynamics code, RPLUS3D, which was developed for the reactive propulsive flows of ramjets and scramjets, was validated for glancing shock wave-boundary layer interactions. Both laminar and turbulent flows were studied. A supersonic flow over a wedge mounted on a flat plate was numerically simulated. For the laminar case, the static pressure distribution, velocity vectors, and particle traces on the flat plate were obtained. For turbulent flow, both the Baldwin-Lomax and Chien two-equation turbulent models were used. The static pressure distributions, pitot pressure, and yaw angle profiles were computed. In addition, the velocity vectors and particle traces on the flat plate were also obtained from the computed solution. Overall, the computed results for both laminar and turbulent cases compared very well with the experimentally obtained data.

  19. Frozen Rotor and Sliding Mesh Models Applied to the 3D Simulation of the Francis-99 Tokke Turbine with Code_Saturne

    NASA Astrophysics Data System (ADS)

    Tonello, N.; Eude, Y.; de Laage de Meux, B.; Ferrand, M.

    2017-01-01

    The steady-state operation of the Francis-99, Tokke turbine [1-3] has been simulated numerically at different loads using the open source, CAD and CFD software, SALOME [4] Code_Saturne [5]. The full 3D mesh of the Tokke turbine provided for the Second Francis-99 Workshop has been adapted and modified to work with the solver. Results are compared for the frozen-rotor and the unsteady, conservative sliding mesh approach over three operating points, showing that good agreement with the experimental data is obtained with both models without having to tune the CFD models for each operating point. Approaches to the simulation of transient operation are also presented with results of work in progress.

  20. Particle-in-cell simulations of plasma accelerators and electron-neutral collisions

    SciTech Connect

    Bruhwiler, David L.; Giacone, Rodolfo E.; Cary, John R.; Verboncoeur, John P.; Mardahl, Peter; Esarey, Eric; Leemans, W.P.; Shadwick, B.A.

    2001-10-01

    We present 2-D simulations of both beam-driven and laser-driven plasma wakefield accelerators, using the object-oriented particle-in-cell code XOOPIC, which is time explicit, fully electromagnetic, and capable of running on massively parallel supercomputers. Simulations of laser-driven wakefields with low ({approx}10{sup 16} W/cm{sup 2}) and high ({approx}10{sup 18} W/cm{sup 2}) peak intensity laser pulses are conducted in slab geometry, showing agreement with theory and fluid simulations. Simulations of the E-157 beam wakefield experiment at the Stanford Linear Accelerator Center, in which a 30 GeV electron beam passes through 1 m of preionized lithium plasma, are conducted in cylindrical geometry, obtaining good agreement with previous work. We briefly describe some of the more significant modifications of XOOPIC required by this work, and summarize the issues relevant to modeling relativistic electron-neutral collisions in a particle-in-cell code.

  1. Electromagnetic particle in cell modeling of the plasma focus: Current sheath formation and lift off

    SciTech Connect

    Seng, Y. S.; Lee, P.; Rawat, R. S.

    2014-02-15

    The shaping and formation of the current sheath takes place in the breakdown phase of a plasma focus device and critically controls the device performance. Electrostatic particle in cell codes, with magnetic effects ignored, have been used to model the breakdown phase. This Letter reports the successful development and implementation of an electromagnetic particle in cell (EMPIC) code, including magnetic effects self-consistently, to simulate the breakdown phase; from the ionization, localization and gliding discharge along the insulator to the time instant of current sheath lift off. The magnetic field was found to be appreciable from the time the current sheath came into contact with the anode with increased local current, initiating the voltage breakdown of the device as a result.

  2. Impact of event-specific chorus wave realization for modeling the October 8-9, 2012, event using the LANL DREAM3D diffusion code

    NASA Astrophysics Data System (ADS)

    Cunningham, G.; Tu, W.; Chen, Y.; Reeves, G. D.; Henderson, M. G.; Baker, D. N.; Blake, J. B.; Spence, H.

    2013-12-01

    During the interval October 8-9, 2012, the phase-space density (PSD) of high-energy electrons exhibited a dropout preceding an intense enhancement observed by the MagEIS and REPT instruments aboard the Van Allen Probes. The evolution of the PSD suggests heating by chorus waves, which were observed to have high intensities at the time of the enhancement [1]. Although intense chorus waves were also observed during the first Dst dip on October 8, no PSD enhancement was observed at this time. We demonstrate a quantitative reproduction of the entire event that makes use of three recent modifications to the LANL DREAM3D diffusion code: 1) incorporation of a time-dependent, low-energy, boundary condition from the MagEIS instrument, 2) use of a time-dependent estimate of the chorus wave intensity derived from observations of POES low-energy electron precipitation, and 3) use of an estimate of the last closed drift shell, beyond which electrons are assumed to have a lifetime that is proportional to their drift period around earth. The key features of the event are quantitatively reproduced by the simulation, including the dropout on October 8, and a rapid increase in PSD early on October 9, with a peak near L*=4.2. The DREAM3D code predicts the dropout on October 8 because this feature is dominated by magnetospheric compression and outward radial diffusion-the L* of the last closed drift-shell reaches a minimum value of 5.33 at 1026 UT on October 8. We find that a ';statistical' wave model based on historical CRRES measurements binned in AE* does not reproduce the enhancement because the peak wave amplitudes are only a few 10's of pT, whereas an ';event-specific' model reproduces both the magnitude and timing of the enhancement very well, a s shown in the Figure, because the peak wave amplitudes are 10x higher. [1] 'Electron Acceleration in the Heart of the Van Allen Radiation Belts', G. D. Reeves et al., Science 1237743, Published online 25 July 2013 [DOI:10.1126/science

  3. Use of the FLUKA Monte Carlo code for 3D patient-specific dosimetry on PET-CT and SPECT-CT images.

    PubMed

    Botta, F; Mairani, A; Hobbs, R F; Vergara Gil, A; Pacilio, M; Parodi, K; Cremonesi, M; Coca Pérez, M A; Di Dia, A; Ferrari, M; Guerriero, F; Battistoni, G; Pedroli, G; Paganelli, G; Torres Aroche, L A; Sgouros, G

    2013-11-21

    Patient-specific absorbed dose calculation for nuclear medicine therapy is a topic of increasing interest. 3D dosimetry at the voxel level is one of the major improvements for the development of more accurate calculation techniques, as compared to the standard dosimetry at the organ level. This study aims to use the FLUKA Monte Carlo code to perform patient-specific 3D dosimetry through direct Monte Carlo simulation on PET-CT and SPECT-CT images. To this aim, dedicated routines were developed in the FLUKA environment. Two sets of simulations were performed on model and phantom images. Firstly, the correct handling of PET and SPECT images was tested under the assumption of homogeneous water medium by comparing FLUKA results with those obtained with the voxel kernel convolution method and with other Monte Carlo-based tools developed to the same purpose (the EGS-based 3D-RD software and the MCNP5-based MCID). Afterwards, the correct integration of the PET/SPECT and CT information was tested, performing direct simulations on PET/CT images for both homogeneous (water) and non-homogeneous (water with air, lung and bone inserts) phantoms. Comparison was performed with the other Monte Carlo tools performing direct simulation as well. The absorbed dose maps were compared at the voxel level. In the case of homogeneous water, by simulating 10(8) primary particles a 2% average difference with respect to the kernel convolution method was achieved; such difference was lower than the statistical uncertainty affecting the FLUKA results. The agreement with the other tools was within 3–4%, partially ascribable to the differences among the simulation algorithms. Including the CT-based density map, the average difference was always within 4% irrespective of the medium (water, air, bone), except for a maximum 6% value when comparing FLUKA and 3D-RD in air. The results confirmed that the routines were properly developed, opening the way for the use of FLUKA for patient-specific, image

  4. Use of the FLUKA Monte Carlo code for 3D patient-specific dosimetry on PET-CT and SPECT-CT images*

    PubMed Central

    Botta, F; Mairani, A; Hobbs, R F; Vergara Gil, A; Pacilio, M; Parodi, K; Cremonesi, M; Coca Pérez, M A; Di Dia, A; Ferrari, M; Guerriero, F; Battistoni, G; Pedroli, G; Paganelli, G; Torres Aroche, L A; Sgouros, G

    2014-01-01

    Patient-specific absorbed dose calculation for nuclear medicine therapy is a topic of increasing interest. 3D dosimetry at the voxel level is one of the major improvements for the development of more accurate calculation techniques, as compared to the standard dosimetry at the organ level. This study aims to use the FLUKA Monte Carlo code to perform patient-specific 3D dosimetry through direct Monte Carlo simulation on PET-CT and SPECT-CT images. To this aim, dedicated routines were developed in the FLUKA environment. Two sets of simulations were performed on model and phantom images. Firstly, the correct handling of PET and SPECT images was tested under the assumption of homogeneous water medium by comparing FLUKA results with those obtained with the voxel kernel convolution method and with other Monte Carlo-based tools developed to the same purpose (the EGS-based 3D-RD software and the MCNP5-based MCID). Afterwards, the correct integration of the PET/SPECT and CT information was tested, performing direct simulations on PET/CT images for both homogeneous (water) and non-homogeneous (water with air, lung and bone inserts) phantoms. Comparison was performed with the other Monte Carlo tools performing direct simulation as well. The absorbed dose maps were compared at the voxel level. In the case of homogeneous water, by simulating 108 primary particles a 2% average difference with respect to the kernel convolution method was achieved; such difference was lower than the statistical uncertainty affecting the FLUKA results. The agreement with the other tools was within 3–4%, partially ascribable to the differences among the simulation algorithms. Including the CT-based density map, the average difference was always within 4% irrespective of the medium (water, air, bone), except for a maximum 6% value when comparing FLUKA and 3D-RD in air. The results confirmed that the routines were properly developed, opening the way for the use of FLUKA for patient-specific, image

  5. Use of the FLUKA Monte Carlo code for 3D patient-specific dosimetry on PET-CT and SPECT-CT images

    NASA Astrophysics Data System (ADS)

    Botta, F.; Mairani, A.; Hobbs, R. F.; Vergara Gil, A.; Pacilio, M.; Parodi, K.; Cremonesi, M.; Coca Pérez, M. A.; Di Dia, A.; Ferrari, M.; Guerriero, F.; Battistoni, G.; Pedroli, G.; Paganelli, G.; Torres Aroche, L. A.; Sgouros, G.

    2013-11-01

    Patient-specific absorbed dose calculation for nuclear medicine therapy is a topic of increasing interest. 3D dosimetry at the voxel level is one of the major improvements for the development of more accurate calculation techniques, as compared to the standard dosimetry at the organ level. This study aims to use the FLUKA Monte Carlo code to perform patient-specific 3D dosimetry through direct Monte Carlo simulation on PET-CT and SPECT-CT images. To this aim, dedicated routines were developed in the FLUKA environment. Two sets of simulations were performed on model and phantom images. Firstly, the correct handling of PET and SPECT images was tested under the assumption of homogeneous water medium by comparing FLUKA results with those obtained with the voxel kernel convolution method and with other Monte Carlo-based tools developed to the same purpose (the EGS-based 3D-RD software and the MCNP5-based MCID). Afterwards, the correct integration of the PET/SPECT and CT information was tested, performing direct simulations on PET/CT images for both homogeneous (water) and non-homogeneous (water with air, lung and bone inserts) phantoms. Comparison was performed with the other Monte Carlo tools performing direct simulation as well. The absorbed dose maps were compared at the voxel level. In the case of homogeneous water, by simulating 108 primary particles a 2% average difference with respect to the kernel convolution method was achieved; such difference was lower than the statistical uncertainty affecting the FLUKA results. The agreement with the other tools was within 3-4%, partially ascribable to the differences among the simulation algorithms. Including the CT-based density map, the average difference was always within 4% irrespective of the medium (water, air, bone), except for a maximum 6% value when comparing FLUKA and 3D-RD in air. The results confirmed that the routines were properly developed, opening the way for the use of FLUKA for patient-specific, image

  6. Rescaling of microwave breakdown theory for monatomic gases by particle-in-cell/Monte Carlo simulations

    SciTech Connect

    Wang, Huihui; Meng, Lin; Liu, Dagang; Liu, Laqun

    2013-12-15

    A particle-in-cell/Monte Carlo code is developed to rescale the microwave breakdown theory which is put forward by Vyskrebentsev and Raizer. The results of simulations show that there is a distinct error in this theory when the high energy tail of electron energy distribution function increases. A rescaling factor is proposed to modify this theory, and the change rule of the rescaling factor is presented.

  7. Modeling of relativistic plasmas with the Particle-In-Cell method

    NASA Astrophysics Data System (ADS)

    Vay, Jean-Luc; Godfrey, Brendan B.

    2014-10-01

    Standard methods employed in relativistic electromagnetic Particle-In-Cell codes are reviewed, as well as novel techniques that were introduced recently. Advances in the analysis and mitigation of the numerical Cherenkov instability are also presented with comparison between analytical theory and numerical experiments. The algorithmic and numerical analytic advances are expanding the range of applicability of the method in the ultra-relativistic regime in particular, where the numerical Cherenkov instability is the strongest without corrective measures.

  8. Implementation of agronomical and geochemical modules into a 3D groundwater code for assessing nitrate storage and transport through unconfined Chalk aquifer

    NASA Astrophysics Data System (ADS)

    Picot-Colbeaux, Géraldine; Devau, Nicolas; Thiéry, Dominique; Pettenati, Marie; Surdyk, Nicolas; Parmentier, Marc; Amraoui, Nadia; Crastes de Paulet, François; André, Laurent

    2016-04-01

    Chalk aquifer is the main water resource for domestic water supply in many parts in northern France. In same basin, groundwater is frequently affected by quality problems concerning nitrates. Often close to or above the drinking water standards, nitrate concentration in groundwater is mainly due to historical agriculture practices, combined with leakage and aquifer recharge through the vadose zone. The complexity of processes occurring into such an environment leads to take into account a lot of knowledge on agronomy, geochemistry and hydrogeology in order to understand, model and predict the spatiotemporal evolution of nitrate content and provide a decision support tool for the water producers and stakeholders. To succeed in this challenge, conceptual and numerical models representing accurately the Chalk aquifer specificity need to be developed. A multidisciplinary approach is developed to simulate storage and transport from the ground surface until groundwater. This involves a new agronomic module "NITRATE" (NItrogen TRansfer for Arable soil to groundwaTEr), a soil-crop model allowing to calculate nitrogen mass balance in arable soil, and the "PHREEQC" numerical code for geochemical calculations, both coupled with the 3D transient groundwater numerical code "MARTHE". Otherwise, new development achieved on MARTHE code allows the use of dual porosity and permeability calculations needed in the fissured Chalk aquifer context. This method concerning the integration of existing multi-disciplinary tools is a real challenge to reduce the number of parameters by selecting the relevant equations and simplifying the equations without altering the signal. The robustness and the validity of these numerical developments are tested step by step with several simulations constrained by climate forcing, land use and nitrogen inputs over several decades. In the first time, simulations are performed in a 1D vertical unsaturated soil column for representing experimental nitrates

  9. Evaluation of the scale dependent dynamic SGS model in the open source code caffa3d.MBRi in wall-bounded flows

    NASA Astrophysics Data System (ADS)

    Draper, Martin; Usera, Gabriel

    2015-04-01

    The Scale Dependent Dynamic Model (SDDM) has been widely validated in large-eddy simulations using pseudo-spectral codes [1][2][3]. The scale dependency, particularly the potential law, has been proved also in a priori studies [4][5]. To the authors' knowledge there have been only few attempts to use the SDDM in finite difference (FD) and finite volume (FV) codes [6][7], finding some improvements with the dynamic procedures (scale independent or scale dependent approach), but not showing the behavior of the scale-dependence parameter when using the SDDM. The aim of the present paper is to evaluate the SDDM in the open source code caffa3d.MBRi, an updated version of the code presented in [8]. caffa3d.MBRi is a FV code, second-order accurate, parallelized with MPI, in which the domain is divided in unstructured blocks of structured grids. To accomplish this, 2 cases are considered: flow between flat plates and flow over a rough surface with the presence of a model wind turbine, taking for this case the experimental data presented in [9]. In both cases the standard Smagorinsky Model (SM), the Scale Independent Dynamic Model (SIDM) and the SDDM are tested. As presented in [6][7] slight improvements are obtained with the SDDM. Nevertheless, the behavior of the scale-dependence parameter supports the generalization of the dynamic procedure proposed in the SDDM, particularly taking into account that no explicit filter is used (the implicit filter is unknown). [1] F. Porté-Agel, C. Meneveau, M.B. Parlange. "A scale-dependent dynamic model for large-eddy simulation: application to a neutral atmospheric boundary layer". Journal of Fluid Mechanics, 2000, 415, 261-284. [2] E. Bou-Zeid, C. Meneveau, M. Parlante. "A scale-dependent Lagrangian dynamic model for large eddy simulation of complex turbulent flows". Physics of Fluids, 2005, 17, 025105 (18p). [3] R. Stoll, F. Porté-Agel. "Dynamic subgrid-scale models for momentum and scalar fluxes in large-eddy simulations of

  10. Verification of particle-in-cell simulations against exact solutions of kinetic equations

    NASA Astrophysics Data System (ADS)

    Turner, Miles

    2015-09-01

    Demonstrating correctness of computer simulations (or verification) has become a matter of increasing concern in recent years. The strongest type of verification is a demonstration that the simulation converges to an exact solution of the mathematical model that is supposed to be solved. Of course, this is possible only if such an exact solution is available. In this paper, we are interested in kinetic simulation using the particle-in-cell method, and consequently a relevant exact solution must be a solution of a kinetic equation. While we know of no such solutions that exercise all the features of a typical particle-in-cell simulation, in this paper we show that the mathematical literature contains several such solutions that involve a large fraction of the functionality of such a code, and which collectively exercise essentially all of the code functionality. These solutions include the plane diode, the neutron criticality problem, and the calculation of ion energy distribution functions in oscillating fields. In each of theses cases, we can show the the particle-in-cell simulation converges to the exact solution in the expected way. These demonstrations are strong evidence of correct implementation. Work supported by Science Foundation Ireland under grant 08/SRC/I1411.

  11. Boundary Integral Corrected Particle In Cell

    NASA Astrophysics Data System (ADS)

    Andrew, Christlieb; Keith, Cartwright

    2007-11-01

    Numerical heating is a serous problem in PIC modeling of cross field Diffusion. Recent work by the author has shown that for, electrostatic problems, the Boundary Integral Treecode (BIT) has far less numerical heating than traditional PIC and that numerical heating can be nearly eliminated if regularization is added to the BIT field solver. In this work we consider the application of BIT as a sub-cell method within each PIC cell, where the boundary conditions on BIT come from the fields computed on the PIC mesh. The goal is to minimize numerical heating in PIC while allowing for mesh spacing in PIC to be much greater than a Debye length. Our overall objective is to inherit the parallel capability of legacy PIC codes while providing high accuracy.

  12. Three-dimensional simulations of high-current beams in induction accelerators with WARP3d

    SciTech Connect

    Grote, D.P.; Friedman, A.; Haber, I.

    1995-09-01

    For many issues relevant to acceleration and propagation of heavy-ion beams for inertial confinement fusion, understanding the behavior of the beam requires the self-consistent inclusion of the self-fields of the beams in multiple dimensions. For these reasons, the three-dimensional simulation code WARP3d A.Friedman was developed. The code combines the particle-in-cell plasma simulation technique with a realistic description of the elements which make up an accelerator. In this paper, the general structure of the code is reviewed and details of two ongoing applications are presented along with a discussion of simulation techniques used. The most important results of this work are presented.

  13. Three-dimensional simple conformal symplectic particle-in-cell methods for simulations of high power microwave devices

    NASA Astrophysics Data System (ADS)

    Wang, Yue; Wang, Jianguo; Chen, Zaigao; Cheng, Guoxin; Wang, Pan

    2016-08-01

    To overcome the staircase error in the traditional particle-in-cell (PIC) method, a three dimensional (3D) simple conformal (SC) symplectic PIC method is presented in this paper. The SC symplectic finite integration technique (FIT) scheme is used to advance the electromagnetic fields without reduction of the time step. Particles are emitted from conformal boundaries with the charge conserving emission scheme and moved by using the relativistic Newton-Lorentz force equation. The symplectic formulas of auxiliary-differential equation, complex frequency shifted perfectly matched layer (ADE-CFS-PML) are given for truncating the open boundaries, numerical results show that the maximum relative error of truncation is less than 90 dB. Based on the surface equivalence theorem, the computing algorithms of conformal signals' injection are given, numerical results show that the algorithms can give the right mode patterns and the errors of cutoff frequencies could be as low as 0.1%. To verify the conformal algorithms, a magnetically insulated line oscillator is simulated, and the results are compared to those provided by using the 2.5D UNIPIC code, which show that they agree well. The results also show that the high order symplectic integration method can suppress the numerical Cherenkov radiation.

  14. Multigrid Particle-in-cell Simulations of Plasma Microturbulence

    SciTech Connect

    J.L.V. Lewandowski

    2003-06-17

    A new scheme to accurately retain kinetic electron effects in particle-in-cell (PIC) simulations for the case of electrostatic drift waves is presented. The splitting scheme, which is based on exact separation between adiabatic and on adiabatic electron responses, is shown to yield more accurate linear growth rates than the standard df scheme. The linear and nonlinear elliptic problems that arise in the splitting scheme are solved using a multi-grid solver. The multi-grid particle-in-cell approach offers an attractive path, both from the physics and numerical points of view, to simulate kinetic electron dynamics in global toroidal plasmas.

  15. Numerical simulations of the ablative Rayleigh-Taylor instability in planar inertial-confinement-fusion targets using the FastRad3D code

    NASA Astrophysics Data System (ADS)

    Bates, J. W.; Schmitt, A. J.; Karasik, M.; Zalesak, S. T.

    2016-12-01

    The ablative Rayleigh-Taylor (RT) instability is a central issue in the performance of laser-accelerated inertial-confinement-fusion targets. Historically, the accurate numerical simulation of this instability has been a challenging task for many radiation hydrodynamics codes, particularly when it comes to capturing the ablatively stabilized region of the linear dispersion spectrum and modeling ab initio perturbations. Here, we present recent results from two-dimensional numerical simulations of the ablative RT instability in planar laser-ablated foils that were performed using the Eulerian code FastRad3D. Our study considers polystyrene, (cryogenic) deuterium-tritium, and beryllium target materials, quarter- and third-micron laser light, and low and high laser intensities. An initial single-mode surface perturbation is modeled in our simulations as a small modulation to the target mass density and the ablative RT growth-rate is calculated from the time history of areal-mass variations once the target reaches a steady-state acceleration. By performing a sequence of such simulations with different perturbation wavelengths, we generate a discrete dispersion spectrum for each of our examples and find that in all cases the linear RT growth-rate γ is well described by an expression of the form γ = α [ k g / ( 1 + ɛ k L m ) ] 1 / 2 - β k V a , where k is the perturbation wavenumber, g is the acceleration of the target, Lm is the minimum density scale-length, Va is the ablation velocity, and ɛ is either one or zero. The dimensionless coefficients α and β in the above formula depend on the particular target and laser parameters and are determined from two-dimensional simulation results through the use of a nonlinear curve-fitting procedure. While our findings are generally consistent with those of Betti et al. (Phys. Plasmas 5, 1446 (1998)), the ablative RT growth-rates predicted in this investigation are somewhat smaller than the values previously reported for the

  16. Transport of 3D space charge dominated beams

    NASA Astrophysics Data System (ADS)

    Lü, Jian-Qin

    2013-10-01

    In this paper we present the theoretical analysis and the computer code design for the intense pulsed beam transport. Intense beam dynamics is a very important issue in low-energy high-current accelerators and beam transport systems. This problem affects beam transmission and beam qualities. Therefore, it attracts the attention of the accelerator physicists worldwide. The analysis and calculation for the intense beam dynamics are very complicated, because the state of particle motion is dominated not only by the applied electromagnetic fields, but also by the beam-induced electromagnetic fields (self-fields). Moreover, the self fields are related to the beam dimensions and particle distributions. So, it is very difficult to get the self-consistent solutions of particle motion analytically. For this reason, we combine the Lie algebraic method and the particle in cell (PIC) scheme together to simulate intense 3D beam transport. With the Lie algebraic method we analyze the particle nonlinear trajectories in the applied electromagnetic fields up to third order approximation, and with the PIC algorithm we calculate the space charge effects to the particle motion. Based on the theoretical analysis, we have developed a computer code, which calculates beam transport systems consisting of electrostatic lenses, electrostatic accelerating columns, solenoid lenses, magnetic and electric quadruples, magnetic sextupoles, octopuses and different kinds of electromagnetic analyzers. The optimization calculations and the graphic display for the calculated results are provided by the code.

  17. A 2D Particle in Cell model for ion extraction and focusing in electrostatic accelerators.

    PubMed

    Veltri, P; Cavenago, M; Serianni, G

    2014-02-01

    Negative ions are fundamental to produce intense and high energy neutral beams used to heat the plasma in fusion devices. The processes regulating the ion extraction involve the formation of a sheath on a scale comparable to the Debye length of the plasma. On the other hand, the ion acceleration as a beam is obtained on distances greater than λD. The paper presents a model for both the phases of ion extraction and acceleration of the ions and its implementation in a numerical code. The space charge of particles is deposited following usual Particle in Cell codes technique, while the field is solved with finite element methods. Some hypotheses on the beam plasma transition are described, allowing to model both regions at the same time. The code was tested with the geometry of the NIO1 negative ions source, and the results are compared with existing ray tracing codes and discussed.

  18. [3D emulation of epicardium dynamic mapping].

    PubMed

    Lu, Jun; Yang, Cui-Wei; Fang, Zu-Xiang

    2005-03-01

    In order to realize epicardium dynamic mapping of the whole atria, 3-D graphics are drawn with OpenGL. Some source codes are introduced in the paper to explain how to produce, read, and manipulate 3-D model data.

  19. Spherical 3D isotropic wavelets

    NASA Astrophysics Data System (ADS)

    Lanusse, F.; Rassat, A.; Starck, J.-L.

    2012-04-01

    Context. Future cosmological surveys will provide 3D large scale structure maps with large sky coverage, for which a 3D spherical Fourier-Bessel (SFB) analysis in spherical coordinates is natural. Wavelets are particularly well-suited to the analysis and denoising of cosmological data, but a spherical 3D isotropic wavelet transform does not currently exist to analyse spherical 3D data. Aims: The aim of this paper is to present a new formalism for a spherical 3D isotropic wavelet, i.e. one based on the SFB decomposition of a 3D field and accompany the formalism with a public code to perform wavelet transforms. Methods: We describe a new 3D isotropic spherical wavelet decomposition based on the undecimated wavelet transform (UWT) described in Starck et al. (2006). We also present a new fast discrete spherical Fourier-Bessel transform (DSFBT) based on both a discrete Bessel transform and the HEALPIX angular pixelisation scheme. We test the 3D wavelet transform and as a toy-application, apply a denoising algorithm in wavelet space to the Virgo large box cosmological simulations and find we can successfully remove noise without much loss to the large scale structure. Results: We have described a new spherical 3D isotropic wavelet transform, ideally suited to analyse and denoise future 3D spherical cosmological surveys, which uses a novel DSFBT. We illustrate its potential use for denoising using a toy model. All the algorithms presented in this paper are available for download as a public code called MRS3D at http://jstarck.free.fr/mrs3d.html

  20. Particle-in-cell simulations on spontaneous thermal magnetic field fluctuations

    SciTech Connect

    Simões, F. J. R. Jr.; Pavan, J.; Gaelzer, R.; Ziebell, L. F.; Yoon, P. H.

    2013-10-15

    In this paper an electromagnetic particle code is used to investigate the spontaneous thermal emission. Specifically we perform particle-in-cell simulations employing a non-relativistic isotropic Maxwellian particle distribution to show that thermal fluctuations are related to the origin of spontaneous magnetic field fluctuation. These thermal fluctuations can become seed for further amplification mechanisms and thus be considered at the origin of the cosmological magnetic field, at microgauss levels. Our numerical results are in accordance with theoretical results presented in the literature.

  1. Load management strategy for Particle-In-Cell simulations in high energy particle acceleration

    NASA Astrophysics Data System (ADS)

    Beck, A.; Frederiksen, J. T.; Dérouillat, J.

    2016-09-01

    In the wake of the intense effort made for the experimental CILEX project, numerical simulation campaigns have been carried out in order to finalize the design of the facility and to identify optimal laser and plasma parameters. These simulations bring, of course, important insight into the fundamental physics at play. As a by-product, they also characterize the quality of our theoretical and numerical models. In this paper, we compare the results given by different codes and point out algorithmic limitations both in terms of physical accuracy and computational performances. These limitations are illustrated in the context of electron laser wakefield acceleration (LWFA). The main limitation we identify in state-of-the-art Particle-In-Cell (PIC) codes is computational load imbalance. We propose an innovative algorithm to deal with this specific issue as well as milestones towards a modern, accurate high-performance PIC code for high energy particle acceleration.

  2. Verification of particle-in-cell simulations with Monte Carlo collisions

    NASA Astrophysics Data System (ADS)

    Turner, M. M.

    2016-10-01

    Widespread recent interest in techniques for demonstrating that computer simulation programs are correct (‘verification’) has been motivated by evidence that traditional development and testing procedures are disturbingly ineffective. Reproducing an exact solution of the relevant model equations is generally accepted as the strongest available verification procedure, but this technique depends on the availability of suitable exact solutions. In this paper we consider verification of a particle-in-cell simulation with Monte Carlo collisions. We know of no exact solutions that simultaneously exercise all of the functions of this code. However, we show here that there can be found in the literature a number of non-trivial exact solutions, each of which exercises a substantial subset of these functions, and which in combination exercise all of the functions of the code. That the code is able to reproduce these solutions is correctness evidence of a stronger kind than has hitherto been elucidated.

  3. Plasma asymmetry due to the magnetic filter in fusion-type negative ion sources: Comparisons between two and three-dimensional particle-in-cell simulations

    SciTech Connect

    Fubiani, G. Boeuf, J. P.

    2014-07-15

    Previously reported 2D Particle-In-Cell Monte Carlo Collisions (PIC-MCC) simulations of negative ion sources under conditions similar to those of the ITER neutral beam injection system have shown that the presence of the magnetic filter tends to generate asymmetry in the plasma properties in the extraction region. In this paper, we show that these conclusions are confirmed by 3D PIC-MCC simulations and we provide quantitative comparisons between the 2D and 3D model predictions.

  4. A study on H and O-H grid generation and associated flow codes for gas turbine 3D Navier Stokes analyses

    NASA Astrophysics Data System (ADS)

    Choi, D.; Knight, C. J.

    1991-06-01

    A method to generate H and O-H grid systems for 3D gas turbine geometries has been developed. It is a simple procedure which solves a set of elliptic equations starting from an initial grid system generated algebraically. This grid generation procedure is for 3D Navier-Stokes analysis based on the scalar or diagonalized form of approximate factorization. The grids generated by this procedure have been applied to 3D heat transfer calculations and compared with experimental results. Detailed comparisons are given for both H and O-H grid topologies, considering the Low Aspect Ratio Turbine (LART) and using a two-equation turbulence model with viscous sublayer resolution.

  5. Efficient GPU implementation for Particle in Cell algorithm

    SciTech Connect

    Joseph, Rejith George; Ravunnikutty, Girish; Ranka, Sanjay; Klasky, Scott A

    2011-01-01

    Particle in cell method is widely used method in the plasma physics to study the trajectories of charged particles under electromagnetic fields. The PIC algorithm is computationally intensive and its time requirements are proportional to the number of charged particles involved in the simulation. The focus of the paper is to parallelize the PIC algorithm on Graphics Processing Unit (GPU). We present several performance tradeoffs related to the small shared memory and atomic operations on the GPU to achieve high performance.

  6. 3D Computations and Experiments

    SciTech Connect

    Couch, R; Faux, D; Goto, D; Nikkel, D

    2004-04-05

    This project consists of two activities. Task A, Simulations and Measurements, combines all the material model development and associated numerical work with the materials-oriented experimental activities. The goal of this effort is to provide an improved understanding of dynamic material properties and to provide accurate numerical representations of those properties for use in analysis codes. Task B, ALE3D Development, involves general development activities in the ALE3D code with the focus of improving simulation capabilities for problems of mutual interest to DoD and DOE. Emphasis is on problems involving multi-phase flow, blast loading of structures and system safety/vulnerability studies.

  7. Particle-in-Cell simulations of filamentary structures formation in DBD-tissue interaction

    NASA Astrophysics Data System (ADS)

    Likhanskii, Alexandre; Messmer, Peter

    2011-10-01

    Recent studies demonstrated high potential of the dielectric barrier discharge (DBD) plasmas for medical applications, such as sterilization or tissue regeneration. Despite intensive experimental studies have been conducted, the mechanism of plasma-tissue interaction still remains unclear. One of the open questions for the plasma-medical applications is the mechanism of filamentary structures formation in plasma and their interaction with tissues. Since formation of filaments is a purely kinetic effect, this issue needs to be addressed using kinetic, Particle-In-Cell simulation approach. We will present results of such numerical study. We performed 2D simulations of multiple streamers generation in atmospheric air using Tech-X's 2D/3D hybrid simulation tool VORPAL. We will demonstrate the resolution of the filamentary structure and will report the plasma properties. We will also address the plasma-induced effects on the tissue.

  8. Time-dependent distribution functions and resulting synthetic NPA spectra in C-Mod calculated with the CQL3D-Hybrid-FOW, AORSA full-wave, and DC Lorentz codes

    NASA Astrophysics Data System (ADS)

    Harvey, R. W.; Petrov, Yu.; Jaeger, E. F.; Berry, L. A.; Bonoli, P. T.; Bader, A.

    2015-12-01

    A time-dependent simulation of C-Mod pulsed TCRF power is made obtaining minority hydrogen ion distributions with the CQL3D-Hybrid-FOW finite-orbit-width Fokker-Planck code. Cyclotron-resonant TCRF fields are calculated with the AORSA full wave code. The RF diffusion coefficients used in CQL3D are obtained with the DC Lorentz gyro-orbit code for perturbed particle trajectories in the combined equilibrium and TCRF electromagnetic fields. Prior results with a zero-banana-width simulation using the CQL3D/AORSA/DC time-cycles showed a pronounced enhancement of the H distribution in the perpendicular velocity direction compared to results obtained from Stix's quasilinear theory, and this substantially increased the rampup rate of the observed vertically-viewed neutral particle analyzer (NPA) flux, in general agreement with experiment. However, ramp down of the NPA flux after the pulse, remained long compared to the experiment. The present study compares the new FOW results, including relevant gyro-radius effects, to determine the importance of these new effects on the the NPA time-dependence.

  9. 3D field harmonics

    SciTech Connect

    Caspi, S.; Helm, M.; Laslett, L.J.

    1991-03-30

    We have developed an harmonic representation for the three dimensional field components within the windings of accelerator magnets. The form by which the field is presented is suitable for interfacing with other codes that make use of the 3D field components (particle tracking and stability). The field components can be calculated with high precision and reduced cup time at any location (r,{theta},z) inside the magnet bore. The same conductor geometry which is used to simulate line currents is also used in CAD with modifications more readily available. It is our hope that the format used here for magnetic fields can be used not only as a means of delivering fields but also as a way by which beam dynamics can suggest correction to the conductor geometry. 5 refs., 70 figs.

  10. Laser-plasma interactions with a Fourier-Bessel particle-in-cell method

    NASA Astrophysics Data System (ADS)

    Andriyash, Igor A.; Lehe, Remi; Lifschitz, Agustin

    2016-03-01

    A new spectral particle-in-cell (PIC) method for plasma modeling is presented and discussed. In the proposed scheme, the Fourier-Bessel transform is used to translate the Maxwell equations to the quasi-cylindrical spectral domain. In this domain, the equations are solved analytically in time, and the spatial derivatives are approximated with high accuracy. In contrast to the finite-difference time domain (FDTD) methods, that are used commonly in PIC, the developed method does not produce numerical dispersion and does not involve grid staggering for the electric and magnetic fields. These features are especially valuable in modeling the wakefield acceleration of particles in plasmas. The proposed algorithm is implemented in the code PLARES-PIC, and the test simulations of laser plasma interactions are compared to the ones done with the quasi-cylindrical FDTD PIC code CALDER-CIRC.

  11. Direct Numerical Simulation of Yukawa Systems by Particle-in-cell Methods

    NASA Astrophysics Data System (ADS)

    Müller, Wolf-Christian; Zeiler, Andreas; Morfill, Gregor E.

    2002-12-01

    Aiming at a fully self-consistent numerical model for the simulation of complex plasmas in rf-driven discharges, a highly efficient parallel particle-in-cell code has been developed, allowing for realizations of up to one billion interacting particles. As a first test case, we consider a Yukawa system which represents the simplest approximation of a complex plasma. The Yukawa approach where the dust particles are dressed with an isotropic Debye potential can be regarded as a low-order description of the dust-plasma interaction in the bulk a rf-driven complex plasma, away from the electrode sheaths. The simulation code is tested by examining a liquid-solid phase transition, i.e., the formation of a face-centered-cubic Yukawa crystal. This is done in a periodic-cube sub-volume, containing 13,824 dust particles, which corresponds to a total system size of ≈ 884,000 particles.

  12. Comparing Particle-in-Cell QED Models for High-Intensity Laser-Plasma Interactions

    NASA Astrophysics Data System (ADS)

    Luedtke, Scott V.; Labun, Lance A.; Hegelich, Björn Manuel

    2016-10-01

    High-intensity lasers, such as the Texas Petawatt, are pushing into new regimes of laser-matter interaction, requiring continuing improvement and inclusion of new physics effects in computer simulations. Experiments at the Texas Petawatt are reaching intensity regimes where new physics-quantum electrodynamics (QED) corrections to otherwise classical plasma dynamics-becomes important. We have two particle-in-cell (PIC) codes with different QED implementations. We review the theory of photon emission in QED-strong fields, and cover the differing PIC implementations. We show predictions from the two codes and compare with ongoing experiments. This work was supported by NNSA cooperative agreement DE-NA0002008, the Defense Advanced Research Projects Agency's PULSE program (12-63-PULSE-FP014) and the Air Force Office of Scientific Research (FA9550-14-1-0045). HPC resources provided by TACC.

  13. Performance improvement study of a relativistic magnetron using MAGIC-3D

    SciTech Connect

    Maurya, S.; Singh, V.V.P.; Jain, P.K.

    2011-07-01

    A three dimensional particle-in-cell (PlC) code, MAGIC3D, is used to examine the performance improvement in a relativistic magnetron by perturbing technique. Asymmetrical metal rods of different length have been used to perturb the magnetic field in the annular sector of the resonant system. Enhancement up to 45% in the radiated output power has been obtained in the perturbed magnetic field case over the unperturbed one. It has also been found in the simulation that oscillation start up time is reduced by 16 %, and the amplitude of the nearest competing mode goes down 9dB compared to unperturbed case. Perturbed magnetic field also reduces the end caps current improving the efficiency. (author)

  14. Sparse grid techniques for particle-in-cell schemes

    NASA Astrophysics Data System (ADS)

    Ricketson, L. F.; Cerfon, A. J.

    2017-02-01

    We propose the use of sparse grids to accelerate particle-in-cell (PIC) schemes. By using the so-called ‘combination technique’ from the sparse grids literature, we are able to dramatically increase the size of the spatial cells in multi-dimensional PIC schemes while paying only a slight penalty in grid-based error. The resulting increase in cell size allows us to reduce the statistical noise in the simulation without increasing total particle number. We present initial proof-of-principle results from test cases in two and three dimensions that demonstrate the new scheme’s efficiency, both in terms of computation time and memory usage.

  15. Optimized Loading for Particle-in-cell Gyrokinetic Simulations

    SciTech Connect

    J.L.V. Lewandowski

    2004-05-13

    The problem of particle loading in particle-in-cell gyrokinetic simulations is addressed using a quadratic optimization algorithm. Optimized loading in configuration space dramatically reduces the short wavelength modes in the electrostatic potential that are partly responsible for the non-conservation of total energy; further, the long wavelength modes are resolved with good accuracy. As a result, the conservation of energy for the optimized loading is much better that the conservation of energy for the random loading. The method is valid for any geometry and can be coupled to optimization algorithms in velocity space.

  16. Lorentz boosted frame simulation technique in Particle-in-cell methods

    NASA Astrophysics Data System (ADS)

    Yu, Peicheng

    In this dissertation, we systematically explore the use of a simulation method for modeling laser wakefield acceleration (LWFA) using the particle-in-cell (PIC) method, called the Lorentz boosted frame technique. In the lab frame the plasma length is typically four orders of magnitude larger than the laser pulse length. Using this technique, simulations are performed in a Lorentz boosted frame in which the plasma length, which is Lorentz contracted, and the laser length, which is Lorentz expanded, are now comparable. This technique has the potential to reduce the computational needs of a LWFA simulation by more than four orders of magnitude, and is useful if there is no or negligible reflection of the laser in the lab frame. To realize the potential of Lorentz boosted frame simulations for LWFA, the first obstacle to overcome is a robust and violent numerical instability, called the Numerical Cerenkov Instability (NCI), that leads to unphysical energy exchange between relativistically drifting particles and their radiation. This leads to unphysical noise that dwarfs the real physical processes. In this dissertation, we first present a theoretical analysis of this instability, and show that the NCI comes from the unphysical coupling of the electromagnetic (EM) modes and Langmuir modes (both main and aliasing) of the relativistically drifting plasma. We then discuss the methods to eliminate them. However, the use of FFTs can lead to parallel scalability issues when there are many more cells along the drifting direction than in the transverse direction(s). We then describe an algorithm that has the potential to address this issue by using a higher order finite difference operator for the derivative in the plasma drifting direction, while using the standard second order operators in the transverse direction(s). The NCI for this algorithm is analyzed, and it is shown that the NCI can be eliminated using the same strategies that were used for the hybrid FFT

  17. Enhanced stopping of macro-particles in particle-in-cell simulations

    SciTech Connect

    May, J.; Tonge, J.; Ellis, I.; Mori, W. B.; Fiuza, F.; Fonseca, R. A.; Silva, L. O.

    2014-05-15

    We derive an equation for energy transfer from relativistic charged particles to a cold background plasma appropriate for finite-size particles that are used in particle-in-cell simulation codes. Expressions for one-, two-, and three-dimensional particles are presented, with special attention given to the two-dimensional case. This energy transfer is due to the electric field of the wake set up in the background plasma by the relativistic particle. The enhanced stopping is dependent on the q{sup 2}/m, where q is the charge and m is the mass of the relativistic particle, and therefore simulation macro-particles with large charge but identical q/m will stop more rapidly. The stopping power also depends on the effective particle shape of the macro-particle. These conclusions are verified in particle-in-cell simulations. We present 2D simulations of test particles, relaxation of high-energy tails, and integrated fast ignition simulations showing that the enhanced drag on macro-particles may adversely affect the results of these simulations in a wide range of high-energy density plasma scenarios. We also describe a particle splitting algorithm which can potentially overcome this problem and show its effect in controlling the stopping of macro-particles.

  18. An Assessment of Some Design Constraints on Heat Production of a 3D Conceptual EGS Model Using an Open-Source Geothermal Reservoir Simulation Code

    SciTech Connect

    Yidong Xia; Mitch Plummer; Robert Podgorney; Ahmad Ghassemi

    2016-02-01

    Performance of heat production process over a 30-year period is assessed in a conceptual EGS model with a geothermal gradient of 65K per km depth in the reservoir. Water is circulated through a pair of parallel wells connected by a set of single large wing fractures. The results indicate that the desirable output electric power rate and lifespan could be obtained under suitable material properties and system parameters. A sensitivity analysis on some design constraints and operation parameters indicates that 1) the fracture horizontal spacing has profound effect on the long-term performance of heat production, 2) the downward deviation angle for the parallel doublet wells may help overcome the difficulty of vertical drilling to reach a favorable production temperature, and 3) the thermal energy production rate and lifespan has close dependence on water mass flow rate. The results also indicate that the heat production can be improved when the horizontal fracture spacing, well deviation angle, and production flow rate are under reasonable conditions. To conduct the reservoir modeling and simulations, an open-source, finite element based, fully implicit, fully coupled hydrothermal code, namely FALCON, has been developed and used in this work. Compared with most other existing codes that are either closed-source or commercially available in this area, this new open-source code has demonstrated a code development strategy that aims to provide an unparalleled easiness for user-customization and multi-physics coupling. Test results have shown that the FALCON code is able to complete the long-term tests efficiently and accurately, thanks to the state-of-the-art nonlinear and linear solver algorithms implemented in the code.

  19. Europeana and 3D

    NASA Astrophysics Data System (ADS)

    Pletinckx, D.

    2011-09-01

    The current 3D hype creates a lot of interest in 3D. People go to 3D movies, but are we ready to use 3D in our homes, in our offices, in our communication? Are we ready to deliver real 3D to a general public and use interactive 3D in a meaningful way to enjoy, learn, communicate? The CARARE project is realising this for the moment in the domain of monuments and archaeology, so that real 3D of archaeological sites and European monuments will be available to the general public by 2012. There are several aspects to this endeavour. First of all is the technical aspect of flawlessly delivering 3D content over all platforms and operating systems, without installing software. We have currently a working solution in PDF, but HTML5 will probably be the future. Secondly, there is still little knowledge on how to create 3D learning objects, 3D tourist information or 3D scholarly communication. We are still in a prototype phase when it comes to integrate 3D objects in physical or virtual museums. Nevertheless, Europeana has a tremendous potential as a multi-facetted virtual museum. Finally, 3D has a large potential to act as a hub of information, linking to related 2D imagery, texts, video, sound. We describe how to create such rich, explorable 3D objects that can be used intuitively by the generic Europeana user and what metadata is needed to support the semantic linking.

  20. 3-D Simulations of NSTAR Ion Thruster Plasma Interactions

    NASA Technical Reports Server (NTRS)

    Wang, J.; Brophy, J.; Polk, J.; Brinza, D.

    1996-01-01

    Described is a Particle-in-Cell with Monte Carlo Collision code developed to perform detailed three-dimensional ion thruster simulations. To capture the full kinetic behavior of ion thruster plumes, both the electrons and ions are treated as test particles. Simulation results are given of the NSTAR ion thruster under ground test and in space conditions. Numerical results are compared.

  1. Comparison of the 3-D Deterministic Neutron Transport Code Attila® To Measure Data, MCNP And MCNPX For The Advanced Test Reactor

    SciTech Connect

    D. Scott Lucas; D. S. Lucas

    2005-09-01

    An LDRD (Laboratory Directed Research and Development) project is underway at the Idaho National Laboratory (INL) to apply the three-dimensional multi-group deterministic neutron transport code (Attila®) to criticality, flux and depletion calculations of the Advanced Test Reactor (ATR). This paper discusses the development of Attila models for ATR, capabilities of Attila, the generation and use of different cross-section libraries, and comparisons to ATR data, MCNP, MCNPX and future applications.

  2. Adapting hierarchical bidirectional inter prediction on a GPU-based platform for 2D and 3D H.264 video coding

    NASA Astrophysics Data System (ADS)

    Rodríguez-Sánchez, Rafael; Martínez, José Luis; Cock, Jan De; Fernández-Escribano, Gerardo; Pieters, Bart; Sánchez, José L.; Claver, José M.; de Walle, Rik Van

    2013-12-01

    The H.264/AVC video coding standard introduces some improved tools in order to increase compression efficiency. Moreover, the multi-view extension of H.264/AVC, called H.264/MVC, adopts many of them. Among the new features, variable block-size motion estimation is one which contributes to high coding efficiency. Furthermore, it defines a different prediction structure that includes hierarchical bidirectional pictures, outperforming traditional Group of Pictures patterns in both scenarios: single-view and multi-view. However, these video coding techniques have high computational complexity. Several techniques have been proposed in the literature over the last few years which are aimed at accelerating the inter prediction process, but there are no works focusing on bidirectional prediction or hierarchical prediction. In this article, with the emergence of many-core processors or accelerators, a step forward is taken towards an implementation of an H.264/AVC and H.264/MVC inter prediction algorithm on a graphics processing unit. The results show a negligible rate distortion drop with a time reduction of up to 98% for the complete H.264/AVC encoder.

  3. Three-dimensional particle-in-cell simulations of 300 GHz reflex klystrons

    SciTech Connect

    Jeon, S. G.; Jin, Y. S.; Kim, J. I.; Kim, G. J.; Shon, C. H.

    2007-03-01

    Three-dimensional (3D) particle-in-cell simulations of 300 GHz reflex klystrons are presented. 300 GHz electromagnetic wave generation in a resonant cavity is analyzed by using a 3D simulation model in which all the geometric parameters (such as the grid thickness, repeller shape, beam radius, etc.) are described. When an electron beam of an energy of 1.0 keV and a net current of 8.9 mA is used, the maximum electronic efficiency of energy transfer is observed when the gap transit angle is 0.7{pi} rad, and the efficiency saturates when the beam current is over 10 mA. Space charge forces produce a shift in the optimum repeller voltage. It is also shown that the effect of the beam temperature is not critical, even though the bunching wavelength of the electron beam is several times smaller than that in conventional vacuum electron devices. Our simulation results show that a microfabricated 300 GHz reflex klystron can directly generate electromagnetic waves with output power levels of several tens of milliwatts.

  4. 3d-3d correspondence revisited

    DOE PAGES

    Chung, Hee -Joong; Dimofte, Tudor; Gukov, Sergei; ...

    2016-04-21

    In fivebrane compactifications on 3-manifolds, we point out the importance of all flat connections in the proper definition of the effective 3d N = 2 theory. The Lagrangians of some theories with the desired properties can be constructed with the help of homological knot invariants that categorify colored Jones polynomials. Higgsing the full 3d theories constructed this way recovers theories found previously by Dimofte-Gaiotto-Gukov. As a result, we also consider the cutting and gluing of 3-manifolds along smooth boundaries and the role played by all flat connections in this operation.

  5. Extended particle-in-cell schemes for physics in ultrastrong laser fields: Review and developments.

    PubMed

    Gonoskov, A; Bastrakov, S; Efimenko, E; Ilderton, A; Marklund, M; Meyerov, I; Muraviev, A; Sergeev, A; Surmin, I; Wallin, E

    2015-08-01

    We review common extensions of particle-in-cell (PIC) schemes which account for strong field phenomena in laser-plasma interactions. After describing the physical processes of interest and their numerical implementation, we provide solutions for several associated methodological and algorithmic problems. We propose a modified event generator that precisely models the entire spectrum of incoherent particle emission without any low-energy cutoff, and which imposes close to the weakest possible demands on the numerical time step. Based on this, we also develop an adaptive event generator that subdivides the time step for locally resolving QED events, allowing for efficient simulation of cascades. Further, we present a unified technical interface for including the processes of interest in different PIC implementations. Two PIC codes which support this interface, PICADOR and ELMIS, are also briefly reviewed.

  6. Extended particle-in-cell schemes for physics in ultrastrong laser fields: Review and developments

    NASA Astrophysics Data System (ADS)

    Gonoskov, A.; Bastrakov, S.; Efimenko, E.; Ilderton, A.; Marklund, M.; Meyerov, I.; Muraviev, A.; Sergeev, A.; Surmin, I.; Wallin, E.

    2015-08-01

    We review common extensions of particle-in-cell (PIC) schemes which account for strong field phenomena in laser-plasma interactions. After describing the physical processes of interest and their numerical implementation, we provide solutions for several associated methodological and algorithmic problems. We propose a modified event generator that precisely models the entire spectrum of incoherent particle emission without any low-energy cutoff, and which imposes close to the weakest possible demands on the numerical time step. Based on this, we also develop an adaptive event generator that subdivides the time step for locally resolving QED events, allowing for efficient simulation of cascades. Further, we present a unified technical interface for including the processes of interest in different PIC implementations. Two PIC codes which support this interface, picador and elmis, are also briefly reviewed.

  7. Particle-in-Cell Simulations of Stimulated Brillouin Scattering in Two and Three Spatial Dimensions.

    NASA Astrophysics Data System (ADS)

    Giacone, R. E.; Vu, H. X.

    1996-11-01

    The results arising from numerical simulations of Stimulated Brillouin Scattering (SBS) in two and three spatial dimensions using HERCULES, a particle ion/adiabatic fluid-electron particle-in cell code(H. X. Vu, J. Comput. Phys.) 124, 417 (1996)., are presented. We compare the results of these simulations against the solutions of a linearized fluid model of SBS in homogeneous plasmas(C. J. McKinstrie, R. Betti, R. E. Giacone, T. Kolber and J. S. Li, Phys. Rev. E) 50, 2182 (1994).. Multidimensional effects on the angular dependance of SBS are studied. The results obtained from numerical simulations are in good agreement with the linear model. Comparisons of beam bending (H. A. Rose, Phys. Plasmas) 3, 1709 (1996). and cross laser beams effects in two and three dimensions will be also presented. Work performed under the auspices of the US Department of Energy.

  8. Plasma electron hole kinematics. II. Hole tracking Particle-In-Cell simulation

    NASA Astrophysics Data System (ADS)

    Zhou, C.; Hutchinson, I. H.

    2016-08-01

    The kinematics of a 1-D electron hole is studied using a novel Particle-In-Cell simulation code. A hole tracking technique enables us to follow the trajectory of a fast-moving solitary hole and study quantitatively hole acceleration and coupling to ions. We observe a transient at the initial stage of hole formation when the hole accelerates to several times the cold-ion sound speed. Artificially imposing slow ion speed changes on a fully formed hole causes its velocity to change even when the ion stream speed in the hole frame greatly exceeds the ion thermal speed, so there are no reflected ions. The behavior that we observe in numerical simulations agrees very well with our analytic theory of hole momentum conservation and the effects of "jetting."

  9. Solution of Poisson's equation in electrostatic Particle-In-Cell simulations

    NASA Astrophysics Data System (ADS)

    Kahnfeld, Daniel; Schneider, Ralf; Matyash, Konstantin; Lüskow, Karl; Bandelow, Gunnar; Kalentev, Oleksandr; Duras, Julia; Kemnitz, Stefan

    2016-10-01

    For spacecrafts the concept of ion thrusters presents a very efficient method of propulsion. Optimization of thrusters is imperative, but experimental access is difficult. Plasma simulations offer means to understand the plasma physics within an ion thruster and can aid the design of new thruster concepts. In order to achieve best simulation performances, code optimizations and parallelization strategies need to be investigated. In this work the role of different solution strategies for Poisson's equation in electrostatic Particle-in-Cell simulations of the HEMP-DM3a ion thruster was studied. The direct solution method of LU decomposition is compared to a stationary iterative method, the successive over-relaxation solver. Results and runtime of solvers were compared, and an outlook on further improvements and developments is presented. This work was supported by the German Space Agency DLR through Project 50RS1510..

  10. Particle in cell simulation of laser-accelerated proton beams for radiation therapy.

    PubMed

    Fourkal, E; Shahine, B; Ding, M; Li, J S; Tajima, T; Ma, C M

    2002-12-01

    In this article we present the results of particle in cell (PIC) simulations of laser plasma interaction for proton acceleration for radiation therapy treatments. We show that under optimal interaction conditions protons can be accelerated up to relativistic energies of 300 MeV by a petawatt laser field. The proton acceleration is due to the dragging Coulomb force arising from charge separation induced by the ponderomotive pressure (light pressure) of high-intensity laser. The proton energy and phase space distribution functions obtained from the PIC simulations are used in the calculations of dose distributions using the GEANT Monte Carlo simulation code. Because of the broad energy and angular spectra of the protons, a compact particle selection and beam collimation system will be needed to generate small beams of polyenergetic protons for intensity modulated proton therapy.

  11. Validation of two 3-D numerical computation codes for the flows in an annular cascade of high turning angle turbine blades

    NASA Astrophysics Data System (ADS)

    Wensheng, Wang; Fengxian, Zhang; Yanji, Xu; Naixing, Chen

    This paper describes and validates two improved three-dimensional numerical methods employed for calculating the flows in an annular cascade of high turning angle turbine blades tested by the authors in the annular cascade wind tunnel of the Institute of Engineering Thermophysics. Comparisons between the predictions and measurements were made on the static pressure contours of blade pressure and suction surfaces, and the spanwise distributions of pitchwise area-averaged static pressure coefficient and flow angle in the downstream of the cascade. The agreement between the calculated results and experimental data shows good and validates the reliability and applicability of the computation codes.

  12. SHAPEMOL: a 3D code for calculating CO line emission in planetary and protoplanetary nebulae. Detailed model-fitting of the complex nebula NGC 6302

    NASA Astrophysics Data System (ADS)

    Santander-García, M.; Bujarrabal, V.; Koning, N.; Steffen, W.

    2015-01-01

    Context. Modern instrumentation in radioastronomy constitutes a valuable tool for studying the Universe: ALMA has reached unprecedented sensitivities and spatial resolution, while Herschel/HIFI has opened a new window (most of the sub-mm and far-infrared ranges are only accessible from space) for probing molecular warm gas (~50-1000 K). On the other hand, the software SHAPE has emerged in the past few years as a standard tool for determining the morphology and velocity field of different kinds of gaseous emission nebulae via spatio-kinematical modelling. Standard SHAPE implements radiative transfer solving, but it is only available for atomic species and not for molecules. Aims: Being aware of the growing importance of the development of tools for simplifying the analyses of molecular data from new-era observatories, we introduce the computer code shapemol, a complement to SHAPE, with which we intend to fill the so-far under-developed molecular niche. Methods: shapemol enables user-friendly, spatio-kinematic modelling with accurate non-LTE calculations of excitation and radiative transfer in CO lines. Currently, it allows radiative transfer solving in the 12CO and 13CO J = 1-0 to J = 17-16 lines, but its implementation permits easily extending the code to different transitions and other molecular species, either by the code developers or by the user. Used along SHAPE, shapemol allows easily generating synthetic maps to test against interferometric observations, as well as synthetic line profiles to match single-dish observations. Results: We give a full description of how shapemol works, and we discuss its limitations and the sources of uncertainty to be expected in the final synthetic profiles or maps. As an example of the power and versatility of shapemol, we build a model of the molecular envelope of the planetary nebula NGC 6302 and compare it with 12CO and 13CO J = 2-1 interferometric maps from SMA and high-J transitions from Herschel/HIFI. We find the

  13. Accelerating particle-in-cell simulations using multilevel Monte Carlo

    NASA Astrophysics Data System (ADS)

    Ricketson, Lee

    2015-11-01

    Particle-in-cell (PIC) simulations have been an important tool in understanding plasmas since the dawn of the digital computer. Much more recently, the multilevel Monte Carlo (MLMC) method has accelerated particle-based simulations of a variety of systems described by stochastic differential equations (SDEs), from financial portfolios to porous media flow. The fundamental idea of MLMC is to perform correlated particle simulations using a hierarchy of different time steps, and to use these correlations for variance reduction on the fine-step result. This framework is directly applicable to the Langevin formulation of Coulomb collisions, as demonstrated in previous work, but in order to apply to PIC simulations of realistic scenarios, MLMC must be generalized to incorporate self-consistent evolution of the electromagnetic fields. We present such a generalization, with rigorous results concerning its accuracy and efficiency. We present examples of the method in the collisionless, electrostatic context, and discuss applications and extensions for the future.

  14. Particle-in-cell simulations for virtual cathode oscillator including foil ablation effects

    SciTech Connect

    Singh, Gursharn; Chaturvedi, S.

    2011-06-15

    We have performed two- and three-dimensional, relativistic, electromagnetic, particle-in-cell simulations of an axially extracted virtual cathode oscillator (vircator). The simulations include, for the first time, self-consistent dynamics of the anode foil under the influence of the intense electron beam. This yields the variation of microwave output power as a function of time, including the role of anode ablation and anode-cathode gap closure. These simulations have been done using locally developed particle-in-cell (PIC) codes. The codes have been validated using two vircator designs available from the literature. The simulations reported in the present paper take account of foil ablation due to the intense electron flux, the resulting plasma expansion and shorting of the anode-cathode gap. The variation in anode transparency due to plasma formation is automatically taken into account. We find that damage is generally higher near the axis. Also, at all radial positions, there is little damage in the early stages, followed by a period of rapid erosion, followed in turn by low damage rates. A physical explanation has been given for these trends. As a result of gap closure due to plasma formation from the foil, the output microwave power initially increases, reaches a near-flat-top and then decreases steadily, reaching a minimum around 230 ns. This is consistent with a typical plasma expansion velocity of {approx}2 cm/{mu}s reported in the literature. We also find a significant variation in the dominant output frequency, from 6.3 to 7.6 GHz. This variation is small as long as the plasma density is small, up to {approx}40 ns. As the AK gap starts filling with plasma, there is a steady increase in this frequency.

  15. RT3D tutorials for GMS users

    SciTech Connect

    Clement, T.P.; Jones, N.L.

    1998-02-01

    RT3D (Reactive Transport in 3-Dimensions) is a computer code that solves coupled partial differential equations that describe reactive-flow and transport of multiple mobile and/or immobile species in a three dimensional saturated porous media. RT3D was developed from the single-species transport code, MT3D (DoD-1.5, 1997 version). As with MT3D, RT3D also uses the USGS groundwater flow model MODFLOW for computing spatial and temporal variations in groundwater head distribution. This report presents a set of tutorial problems that are designed to illustrate how RT3D simulations can be performed within the Department of Defense Groundwater Modeling System (GMS). GMS serves as a pre- and post-processing interface for RT3D. GMS can be used to define all the input files needed by RT3D code, and later the code can be launched from within GMS and run as a separate application. Once the RT3D simulation is completed, the solution can be imported to GMS for graphical post-processing. RT3D v1.0 supports several reaction packages that can be used for simulating different types of reactive contaminants. Each of the tutorials, described below, provides training on a different RT3D reaction package. Each reaction package has different input requirements, and the tutorials are designed to describe these differences. Furthermore, the tutorials illustrate the various options available in GMS for graphical post-processing of RT3D results. Users are strongly encouraged to complete the tutorials before attempting to use RT3D and GMS on a routine basis.

  16. Semiclassical modeling of quantum-mechanical multiparticle systems using parallel particle-in-cell methods

    NASA Astrophysics Data System (ADS)

    Dauger, Dean Edward

    2001-08-01

    We are successful in building a code that models many particle dynamic quantum systems by combining a semiclassical approximation of Feynman path integrals with parallel computing techniques (particle-in-cell) and numerical methods developed for simulating plasmas, establishing this approach as a viable technique for multiparticle time-dependent quantum mechanics. Run on high-performance parallel computers, this code applies semiclassical methods to simulate the time evolution of wavefunctions of many particles. We describe the analytical derivation and computational implementation of these techniques in detail. We present a study to thoroughly demonstrate the code's fidelity to quantum mechanics, resulting in innovative visualization and analysis techniques. We introduce and exhibit a method to address fermion particle statistics. We present studies of two quantum-mechanical problems: a two-electron, one- dimensional atom, resulting in high-quality extractions of one- and two-electron eigenstates, and electrostatic quasi-modes due to quantum effects in a hot electron plasma, relevant for predictions about stellar evolution. We supply discussions of alternative derivations, alternative implementations of the derivations, and an exploration of their consequences. Source code is shown throughout this dissertation. Finally, we present an extensive discussion of applications and extrapolations of this work, with suggestions for future direction.

  17. HST3D; a computer code for simulation of heat and solute transport in three-dimensional ground-water flow systems

    USGS Publications Warehouse

    Kipp, K.L.

    1987-01-01

    The Heat- and Soil-Transport Program (HST3D) simulates groundwater flow and associated heat and solute transport in three dimensions. The three governing equations are coupled through the interstitial pore velocity, the dependence of the fluid density on pressure, temperature, the solute-mass fraction , and the dependence of the fluid viscosity on temperature and solute-mass fraction. The solute transport equation is for only a single, solute species with possible linear equilibrium sorption and linear decay. Finite difference techniques are used to discretize the governing equations using a point-distributed grid. The flow-, heat- and solute-transport equations are solved , in turn, after a particle Gauss-reduction scheme is used to modify them. The modified equations are more tightly coupled and have better stability for the numerical solutions. The basic source-sink term represents wells. A complex well flow model may be used to simulate specified flow rate and pressure conditions at the land surface or within the aquifer, with or without pressure and flow rate constraints. Boundary condition types offered include specified value, specified flux, leakage, heat conduction, and approximate free surface, and two types of aquifer influence functions. All boundary conditions can be functions of time. Two techniques are available for solution of the finite difference matrix equations. One technique is a direct-elimination solver, using equations reordered by alternating diagonal planes. The other technique is an iterative solver, using two-line successive over-relaxation. A restart option is available for storing intermediate results and restarting the simulation at an intermediate time with modified boundary conditions. This feature also can be used as protection against computer system failure. Data input and output may be in metric (SI) units or inch-pound units. Output may include tables of dependent variables and parameters, zoned-contour maps, and plots of the

  18. Real-Time Motion Capture Toolbox (RTMocap): an open-source code for recording 3-D motion kinematics to study action-effect anticipations during motor and social interactions.

    PubMed

    Lewkowicz, Daniel; Delevoye-Turrell, Yvonne

    2016-03-01

    We present here a toolbox for the real-time motion capture of biological movements that runs in the cross-platform MATLAB environment (The MathWorks, Inc., Natick, MA). It provides instantaneous processing of the 3-D movement coordinates of up to 20 markers at a single instant. Available functions include (1) the setting of reference positions, areas, and trajectories of interest; (2) recording of the 3-D coordinates for each marker over the trial duration; and (3) the detection of events to use as triggers for external reinforcers (e.g., lights, sounds, or odors). Through fast online communication between the hardware controller and RTMocap, automatic trial selection is possible by means of either a preset or an adaptive criterion. Rapid preprocessing of signals is also provided, which includes artifact rejection, filtering, spline interpolation, and averaging. A key example is detailed, and three typical variations are developed (1) to provide a clear understanding of the importance of real-time control for 3-D motion in cognitive sciences and (2) to present users with simple lines of code that can be used as starting points for customizing experiments using the simple MATLAB syntax. RTMocap is freely available (http://sites.google.com/site/RTMocap/) under the GNU public license for noncommercial use and open-source development, together with sample data and extensive documentation.

  19. Multi-scale simulations of space problems with iPIC3D

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni; Bettarini, Lapo; Markidis, Stefano

    The implicit Particle-in-Cell method for the computer simulation of space plasma, and its im-plementation in a three-dimensional parallel code, called iPIC3D, are presented. The implicit integration in time of the Vlasov-Maxwell system removes the numerical stability constraints and enables kinetic plasma simulations at magnetohydrodynamics scales. Simulations of mag-netic reconnection in plasma are presented to show the effectiveness of the algorithm. In particular we will show a number of simulations done for large scale 3D systems using the physical mass ratio for Hydrogen. Most notably one simulation treats kinetically a box of tens of Earth radii in each direction and was conducted using about 16000 processors of the Pleiades NASA computer. The work is conducted in collaboration with the MMS-IDS theory team from University of Colorado (M. Goldman, D. Newman and L. Andersson). Reference: Stefano Markidis, Giovanni Lapenta, Rizwan-uddin Multi-scale simulations of plasma with iPIC3D Mathematics and Computers in Simulation, Available online 17 October 2009, http://dx.doi.org/10.1016/j.matcom.2009.08.038

  20. A fast mode decision algorithm for multiview auto-stereoscopic 3D video coding based on mode and disparity statistic analysis

    NASA Astrophysics Data System (ADS)

    Ding, Cong; Sang, Xinzhu; Zhao, Tianqi; Yan, Binbin; Leng, Junmin; Yuan, Jinhui; Zhang, Ying

    2012-11-01

    Multiview video coding (MVC) is essential for applications of the auto-stereoscopic three-dimensional displays. However, the computational complexity of MVC encoders is tremendously huge. Fast algorithms are very desirable for the practical applications of MVC. Based on joint early termination , the selection of inter-view prediction and the optimization of the process of Inter8×8 modes by comparison, a fast macroblock(MB) mode selection algorithm is presented. Comparing with the full mode decision in MVC, the experimental results show that the proposed algorithm can reduce up to 78.13% on average and maximum 90.21% encoding time with a little increase in bit rates and loss in PSNR.

  1. SNL3dFace

    SciTech Connect

    Russ, Trina; Koch, Mark; Koudelka, Melissa; Peters, Ralph; Little, Charles; Boehnen, Chris; Peters, Tanya

    2007-07-20

    This software distribution contains MATLAB and C++ code to enable identity verification using 3D images that may or may not contain a texture component. The code is organized to support system performance testing and system capability demonstration through the proper configuration of the available user interface. Using specific algorithm parameters the face recognition system has been demonstrated to achieve a 96.6% verification rate (Pd) at 0.001 false alarm rate. The system computes robust facial features of a 3D normalized face using Principal Component Analysis (PCA) and Fisher Linear Discriminant Analysis (FLDA). A 3D normalized face is obtained by alighning each face, represented by a set of XYZ coordinated, to a scaled reference face using the Iterative Closest Point (ICP) algorithm. The scaled reference face is then deformed to the input face using an iterative framework with parameters that control the deformed surface regulation an rate of deformation. A variety of options are available to control the information that is encoded by the PCA. Such options include the XYZ coordinates, the difference of each XYZ coordinates from the reference, the Z coordinate, the intensity/texture values, etc. In addition to PCA/FLDA feature projection this software supports feature matching to obtain similarity matrices for performance analysis. In addition, this software supports visualization of the STL, MRD, 2D normalized, and PCA synthetic representations in a 3D environment.

  2. 3D and Education

    NASA Astrophysics Data System (ADS)

    Meulien Ohlmann, Odile

    2013-02-01

    Today the industry offers a chain of 3D products. Learning to "read" and to "create in 3D" becomes an issue of education of primary importance. 25 years professional experience in France, the United States and Germany, Odile Meulien set up a personal method of initiation to 3D creation that entails the spatial/temporal experience of the holographic visual. She will present some different tools and techniques used for this learning, their advantages and disadvantages, programs and issues of educational policies, constraints and expectations related to the development of new techniques for 3D imaging. Although the creation of display holograms is very much reduced compared to the creation of the 90ies, the holographic concept is spreading in all scientific, social, and artistic activities of our present time. She will also raise many questions: What means 3D? Is it communication? Is it perception? How the seeing and none seeing is interferes? What else has to be taken in consideration to communicate in 3D? How to handle the non visible relations of moving objects with subjects? Does this transform our model of exchange with others? What kind of interaction this has with our everyday life? Then come more practical questions: How to learn creating 3D visualization, to learn 3D grammar, 3D language, 3D thinking? What for? At what level? In which matter? for whom?

  3. Static & Dynamic Response of 3D Solids

    SciTech Connect

    Lin, Jerry

    1996-07-15

    NIKE3D is a large deformations 3D finite element code used to obtain the resulting displacements and stresses from multi-body static and dynamic structural thermo-mechanics problems with sliding interfaces. Many nonlinear and temperature dependent constitutive models are available.

  4. Physics based optimization of Particle-in-Cell simulations on GPUs

    NASA Astrophysics Data System (ADS)

    Abbott, Stephen; D'Azevedo, Ed

    2016-10-01

    We present progress in improving the performance of the gyrokinetic particle-in-cell (PIC) code XGC-1 on NVIDIA GPUs, as well as enhancements made to portability and developer productivity using OpenACC directives. Increasingly simulation codes are required to use heterogeneous accelerator resources on the most powerful supercomputing systems. PIC methods are well suited to these massively parallel accelerator architectures, as particles can largely be advanced independently within a time-step. Their advance must still, however, reference field data on underlying grid structures, which presents a significant performance bottleneck. Even ported to GPUs using CUDA Fortran, the XGC-1 electron push routine accounts for a significant portion of the code execution time. By applying physical insight to the motion of electrons across the device (and therefore field grids) we have developed techniques that increase performance of this kernel by up to 5X, compared to the original CUDA Fortran implementation. Architecture specific optimizations can be isolated in small `leaf' routines, which allows for a portable OpenACC implementation that performs nearly as well as the optimized CUDA.

  5. Particle-in-cell simulations of discharges with intense electron emission

    NASA Astrophysics Data System (ADS)

    Sydorenko, Dmytro

    2013-09-01

    In many plasma devices, the plasma is bounded by walls which emit electrons due to secondary electron emission or thermionic emission. At low pressures, the electron mean free path exceeds the plasma dimensions, and the emitted electrons accelerated by the intense electric field of the near-wall sheath propagate through the plasma as an electron beam. The beam dynamics in a finite length system is different from theoretical predictions for infinite or periodic plasmas. This presentation gives a summary of numerical studies of beam-plasma interaction in Hall thrusters and dc discharges carried out with a particle-in-cell code. The code resolves one spatial coordinate and three velocity components, it is based on the direct implicit algorithm, the electron-to-ion mass ratio is realistic, numerous collisions between electrons and neutrals and the Coulomb collisions are included, code performance is enhanced with the help of MPI parallelization. The following effects are discussed: vanishing of the two-stream instability due to modification of the bulk electron velocity distribution, sheath instability in Hall thrusters, intermittency and multiple regimes of the two-stream instability in dc discharges. In collaboration with I. D. Kaganovich, Y. Raitses, A. V. Khrabrov (Princeton Plasma Physics Laboratory, Princeton, NJ), P. L. G. Ventzek, L. Chen (Tokyo Electron America, Austin, TX), A. Smolyakov (University of Saskatchewan, Saskatoon, SK, Canada).

  6. 3D Imaging.

    ERIC Educational Resources Information Center

    Hastings, S. K.

    2002-01-01

    Discusses 3 D imaging as it relates to digital representations in virtual library collections. Highlights include X-ray computed tomography (X-ray CT); the National Science Foundation (NSF) Digital Library Initiatives; output peripherals; image retrieval systems, including metadata; and applications of 3 D imaging for libraries and museums. (LRW)

  7. Slurm: An innovative Particle-in-Cell Method for Magnetohydrodynamics

    NASA Astrophysics Data System (ADS)

    Bacchini, Fabio; Olshevsky, Vyacheslav; Lapenta, Giovanni

    2016-10-01

    We present a new Particle-in-Cell method for plasma simulations. This is based on the original algorithm of FLIP-MHD, which uses a Lagrangian formulation of the macroscopic equations. A finite-difference approximation of the equations of motion is solved on a fixed (non-moving) grid, while convection of the quantities is modelled with the support of Lagrangian particles. Interpolation with first-order b-splines is used to project the conserved quantities from particles to the grid and back. In this work, we introduce two modifications of the original scheme. A particle volume evolution procedure is adopted to reduce the computational error, based on the Material Point Method for solid mechanics. The additional step introduces little to none computational diffusion and efficiently suppresses the so-called ringing instability, allowing the use of explicit time differencing. Furthermore, we eliminate the need for a Poisson solver in the magnetic field computation with the use of a vector potential. The vector potential evolution is modelled with a moving grid and interpolated to the fixed grid points to obtain a solenoidal magnetic field. The results of a number of HD and MHD tests show good agreement with the reference solutions and rather fast time and space convergence. Air Force Office of Scientific Research, Air Force Materiel Command, USAF under Award No. FA9550-14-1-0375. European Community's Seventh Framework Programme (FP7/2007-2013) via the DEEP-ER project under Grant Agreement No. 610476.

  8. Exactly energy conserving semi-implicit particle in cell formulation

    NASA Astrophysics Data System (ADS)

    Lapenta, Giovanni

    2017-04-01

    We report a new particle in cell (PIC) method based on the semi-implicit approach. The novelty of the new method is that unlike any of its semi-implicit predecessors at the same time it retains the explicit computational cycle and conserves energy exactly. Recent research has presented fully implicit methods where energy conservation is obtained as part of a non-linear iteration procedure. The new method (referred to as Energy Conserving Semi-Implicit Method, ECSIM), instead, does not require any non-linear iteration and its computational cycle is similar to that of explicit PIC. The properties of the new method are: i) it conserves energy exactly to round-off for any time step or grid spacing; ii) it is unconditionally stable in time, freeing the user from the need to resolve the electron plasma frequency and allowing the user to select any desired time step; iii) it eliminates the constraint of the finite grid instability, allowing the user to select any desired resolution without being forced to resolve the Debye length; iv) the particle mover has a computational complexity identical to that of the explicit PIC, only the field solver has an increased computational cost. The new ECSIM is tested in a number of benchmarks where accuracy and computational performance are tested.

  9. Particle-in-cell simulations of Hall plasma thrusters

    NASA Astrophysics Data System (ADS)

    Miranda, Rodrigo; Ferreira, Jose Leonardo; Martins, Alexandre

    2016-07-01

    Hall plasma thrusters can be modelled using particle-in-cell (PIC) simulations. In these simulations, the plasma is described by a set of equations which represent a coupled system of charged particles and electromagnetic fields. The fields are computed using a spatial grid (i.e., a discretization in space), whereas the particles can move continuously in space. Briefly, the particle and fields dynamics are computed as follows. First, forces due to electric and magnetic fields are employed to calculate the velocities and positions of particles. Next, the velocities and positions of particles are used to compute the charge and current densities at discrete positions in space. Finally, these densities are used to solve the electromagnetic field equations in the grid, which are interpolated at the position of the particles to obtain the acting forces, and restart this cycle. We will present numerical simulations using software for PIC simulations to study turbulence, wave and instabilities that arise in Hall plasma thrusters. We have sucessfully reproduced a numerical simulation of a SPT-100 Hall thruster using a two-dimensional (2D) model. In addition, we are developing a 2D model of a cylindrical Hall thruster. The results of these simulations will contribute to improve the performance of plasma thrusters to be used in Cubesats satellites currenty in development at the Plasma Laboratory at University of Brasília.

  10. GPU Acceleration of Particle-In-Cell Methods

    NASA Astrophysics Data System (ADS)

    Cowan, Benjamin; Cary, John; Sides, Scott

    2016-10-01

    Graphics processing units (GPUs) have become key components in many supercomputing systems, as they can provide more computations relative to their cost and power consumption than conventional processors. However, to take full advantage of this capability, they require a strict programming model which involves single-instruction multiple-data execution as well as significant constraints on memory accesses. To bring the full power of GPUs to bear on plasma physics problems, we must adapt the computational methods to this new programming model. We have developed a GPU implementation of the particle-in-cell (PIC) method, one of the mainstays of plasma physics simulation. This framework is highly general and enables advanced PIC features such as high order particles and absorbing boundary conditions. The main elements of the PIC loop, including field interpolation and particle deposition, are designed to optimize memory access. We describe the performance of these algorithms and discuss some of the methods used. Work supported by DARPA Contract No. W31P4Q-16-C-0009.

  11. GPU acceleration of particle-in-cell methods

    NASA Astrophysics Data System (ADS)

    Cowan, Benjamin; Cary, John; Meiser, Dominic

    2015-11-01

    Graphics processing units (GPUs) have become key components in many supercomputing systems, as they can provide more computations relative to their cost and power consumption than conventional processors. However, to take full advantage of this capability, they require a strict programming model which involves single-instruction multiple-data execution as well as significant constraints on memory accesses. To bring the full power of GPUs to bear on plasma physics problems, we must adapt the computational methods to this new programming model. We have developed a GPU implementation of the particle-in-cell (PIC) method, one of the mainstays of plasma physics simulation. This framework is highly general and enables advanced PIC features such as high order particles and absorbing boundary conditions. The main elements of the PIC loop, including field interpolation and particle deposition, are designed to optimize memory access. We describe the performance of these algorithms and discuss some of the methods used. Work supported by DARPA contract W31P4Q-15-C-0061 (SBIR).

  12. Speed-limited particle-in-cell (SLPIC) simulation

    NASA Astrophysics Data System (ADS)

    Werner, Gregory; Cary, John; Jenkins, Thomas

    2016-10-01

    Speed-limited particle-in-cell (SLPIC) simulation is a new method for particle-based plasma simulation that allows increased timesteps in cases where the timestep is determined (e.g., in standard PIC) not by the smallest timescale of interest, but rather by an even smaller physical timescale that affects numerical stability. For example, SLPIC need not resolve the plasma frequency if plasma oscillations do not play a significant role in the simulation; in contrast, standard PIC must usually resolve the plasma frequency to avoid instability. Unlike fluid approaches, SLPIC retains a fully-kinetic description of plasma particles and includes all the same physical phenomena as PIC; in fact, if SLPIC is run with a PIC-compatible timestep, it is identical to PIC. However, unlike PIC, SLPIC can run stably with larger timesteps. SLPIC has been shown to be effective for finding steady-state solutions for 1D collisionless sheath problems, greatly speeding up computation despite a large ion/electron mass ratio. SLPIC is a relatively small modification of standard PIC, with no complexities that might degrade parallel efficiency (compared to PIC), and is similarly compatible with PIC field solvers and boundary conditions.

  13. Molecular evolution of VP3, VP1, 3C(pro) and 3D(pol) coding regions in coxsackievirus group A type 24 variant isolates from acute hemorrhagic conjunctivitis in 2011 in Okinawa, Japan.

    PubMed

    Nidaira, Minoru; Kuba, Yumani; Saitoh, Mika; Taira, Katsuya; Maeshiro, Noriyuki; Mahoe, Yoko; Kyan, Hisako; Takara, Taketoshi; Okano, Sho; Kudaka, Jun; Yoshida, Hiromu; Oishi, Kazunori; Kimura, Hirokazu

    2014-04-01

    A large acute hemorrhagic conjunctivitis (AHC) outbreak occurred in 2011 in Okinawa Prefecture in Japan. Ten strains of coxsackievirus group A type 24 variant (CA24v) were isolated from patients with AHC and full sequence analysis of the VP3, VP1, 3C(pro) and 3D(pol) coding regions performed. To assess time-scale evolution, phylogenetic analysis was performed using the Bayesian Markov chain Monte Carlo method. In addition, similarity plots were constructed and pairwise distance (p-distance) and positive pressure analyses performed. A phylogenetic tree based on the VP1 coding region showed that the present strains belong to genotype 4 (G4). In addition, the present strains could have divided in about 2010 from the same lineages detected in other countries such as China, India and Australia. The mean rates of molecular evolution of four coding regions were estimated at about 6.15 to 7.86 × 10(-3) substitutions/site/year. Similarity plot analyses suggested that nucleotide similarities between the present strains and a prototype strain (EH24/70 strain) were 0.77-0.94. The p-distance of the present strains was relatively short (<0.01). Only one positive selected site (L25H) was identified in the VP1 protein. These findings suggest that the present CA24v strains causing AHC are genetically related to other AHC strains with rapid evolution and emerged in around 2010.

  14. A particle-in-cell method for the simulation of plasmas based on an unconditionally stable field solver

    NASA Astrophysics Data System (ADS)

    Wolf, Eric M.; Causley, Matthew; Christlieb, Andrew; Bettencourt, Matthew

    2016-12-01

    We propose a new particle-in-cell (PIC) method for the simulation of plasmas based on a recently developed, unconditionally stable solver for the wave equation. This method is not subject to a CFL restriction, limiting the ratio of the time step size to the spatial step size, typical of explicit methods, while maintaining computational cost and code complexity comparable to such explicit schemes. We describe the implementation in one and two dimensions for both electrostatic and electromagnetic cases, and present the results of several standard test problems, showing good agreement with theory with time step sizes much larger than allowed by typical CFL restrictions.

  15. The hierarchical spatial decomposition of three-dimensional particle- in-cell plasma simulations on MIMD distributed memory multiprocessors

    SciTech Connect

    Walker, D.W.

    1992-07-01

    The hierarchical spatial decomposition method is a promising approach to decomposing the particles and computational grid in parallel particle-in-cell application codes, since it is able to maintain approximate dynamic load balance while keeping communication costs low. In this paper we investigate issues in implementing a hierarchical spatial decomposition on a hypercube multiprocessor. Particular attention is focused on the communication needed to update guard ring data, and on the load balancing method. The hierarchical approach is compared with other dynamic load balancing schemes.

  16. A particle-in-cell method for the simulation of plasmas based on an unconditionally stable field solver

    SciTech Connect

    Wolf, Eric M.; Causley, Matthew; Christlieb, Andrew; Bettencourt, Matthew

    2016-08-09

    Here, we propose a new particle-in-cell (PIC) method for the simulation of plasmas based on a recently developed, unconditionally stable solver for the wave equation. This method is not subject to a CFL restriction, limiting the ratio of the time step size to the spatial step size, typical of explicit methods, while maintaining computational cost and code complexity comparable to such explicit schemes. We describe the implementation in one and two dimensions for both electrostatic and electromagnetic cases, and present the results of several standard test problems, showing good agreement with theory with time step sizes much larger than allowed by typical CFL restrictions.

  17. An Improved Version of TOPAZ 3D

    SciTech Connect

    Krasnykh, Anatoly

    2003-07-29

    An improved version of the TOPAZ 3D gun code is presented as a powerful tool for beam optics simulation. In contrast to the previous version of TOPAZ 3D, the geometry of the device under test is introduced into TOPAZ 3D directly from a CAD program, such as Solid Edge or AutoCAD. In order to have this new feature, an interface was developed, using the GiD software package as a meshing code. The article describes this method with two models to illustrate the results.

  18. Explicit 3-D Hydrodynamic FEM Program

    SciTech Connect

    2000-11-07

    DYNA3D is a nonlinear explicit finite element code for analyzing 3-D structures and solid continuum. The code is vectorized and available on several computer platforms. The element library includes continuum, shell, beam, truss and spring/damper elements to allow maximum flexibility in modeling physical problems. Many materials are available to represent a wide range of material behavior, including elasticity, plasticity, composites, thermal effects and rate dependence. In addition, DYNA3D has a sophisticated contact interface capability, including frictional sliding, single surface contact and automatic contact generation.

  19. 3-D transient analysis of pebble-bed HTGR by TORT-TD/ATTICA3D

    SciTech Connect

    Seubert, A.; Sureda, A.; Lapins, J.; Buck, M.; Bader, J.; Laurien, E.

    2012-07-01

    As most of the acceptance criteria are local core parameters, application of transient 3-D fine mesh neutron transport and thermal hydraulics coupled codes is mandatory for best estimate evaluations of safety margins. This also applies to high-temperature gas cooled reactors (HTGR). Application of 3-D fine-mesh transient transport codes using few energy groups coupled with 3-D thermal hydraulics codes becomes feasible in view of increasing computing power. This paper describes the discrete ordinates based coupled code system TORT-TD/ATTICA3D that has recently been extended by a fine-mesh diffusion solver. Based on transient analyses for the PBMR-400 design, the transport/diffusion capabilities are demonstrated and 3-D local flux and power redistribution effects during a partial control rod withdrawal are shown. (authors)

  20. BEAMS3D Neutral Beam Injection Model

    SciTech Connect

    Lazerson, Samuel

    2014-04-14

    With the advent of applied 3D fi elds in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous velocity reduction, and pitch angle scattering are modeled with the ADAS atomic physics database [1]. Benchmark calculations are presented to validate the collisionless particle orbits, neutral beam injection model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields.

  1. CASTOR3D: linear stability studies for 2D and 3D tokamak equilibria

    NASA Astrophysics Data System (ADS)

    Strumberger, E.; Günter, S.

    2017-01-01

    The CASTOR3D code, which is currently under development, is able to perform linear stability studies for 2D and 3D, ideal and resistive tokamak equilibria in the presence of ideal and resistive wall structures and coils. For these computations ideal equilibria represented by concentric nested flux surfaces serve as input (e.g. computed with the NEMEC code). Solving an extended eigenvalue problem, the CASTOR3D code takes simultaneously plasma inertia and wall resistivity into account. The code is a hybrid of the CASTOR_3DW stability code and the STARWALL code. The former is an extended version of the CASTOR and CASTOR_FLOW code, respectively. The latter is a linear 3D code computing the growth rates of resistive wall modes in the presence of multiply-connected wall structures. The CASTOR_3DW code, and some parts of the STARWALL code have been reformulated in a general 3D flux coordinate representation that allows to choose between various types of flux coordinates. Furthermore, the implemented many-valued current potentials in the STARWALL part allow a correct treatment of the m  =  0, n  =  0 perturbation. In this paper, we outline the theoretical concept, and present some numerical results which illustrate the present status of the code and demonstrate its numerous application possibilities.

  2. H-VLPL: A three-dimensional relativistic PIC/fluid hybrid code

    NASA Astrophysics Data System (ADS)

    Tückmantel, T.; Pukhov, A.

    2014-07-01

    The novel PIC/fluid hybrid plasma simulation code H-VLPL3D is introduced. In addition to the particle-in-cell algorithm, it uses a new numerical fluid scheme for wake field simulations. Specially designed for the accurate simulation of very long wake fields, this scheme is capable of simulating ∼1000 plasma oscillations of the wake. A comprehensive description of the discretization schemes is given, and we demonstrate the code's correctness and its order of accuracy. Also, its superior efficiency in the plasma wake field acceleration (PWFA) regime is shown.

  3. Ex-vessel neutron dosimetry analysis for westinghouse 4-loop XL pressurized water reactor plant using the RadTrack{sup TM} Code System with the 3D parallel discrete ordinates code RAPTOR-M3G

    SciTech Connect

    Chen, J.; Alpan, F. A.; Fischer, G.A.; Fero, A.H.

    2011-07-01

    Traditional two-dimensional (2D)/one-dimensional (1D) SYNTHESIS methodology has been widely used to calculate fast neutron (>1.0 MeV) fluence exposure to reactor pressure vessel in the belt-line region. However, it is expected that this methodology cannot provide accurate fast neutron fluence calculation at elevations far above or below the active core region. A three-dimensional (3D) parallel discrete ordinates calculation for ex-vessel neutron dosimetry on a Westinghouse 4-Loop XL Pressurized Water Reactor has been done. It shows good agreement between the calculated results and measured results. Furthermore, the results show very different fast neutron flux values at some of the former plate locations and elevations above and below an active core than those calculated by a 2D/1D SYNTHESIS method. This indicates that for certain irregular reactor internal structures, where the fast neutron flux has a very strong local effect, it is required to use a 3D transport method to calculate accurate fast neutron exposure. (authors)

  4. Numerical simulation of quantum systems using the Particle-In-Cell method

    NASA Astrophysics Data System (ADS)

    Dirkmann, Sven; Youssef, Ziad; Hemke, Torben; Mussenbrock, Thomas

    2014-10-01

    The Particle-In-Cell (PIC) method is a very powerful method for studying the dynamics of plasmas. It has been primarily developed for tracking the charged particle trajectories subject to selfconsistent and external electromagnetic fields. Exploiting the power of modern computers, one is able to track the classical paths of tens of millions of particles at the same time. In the late 1980th, it was Dawson (and later Dauger) who had the idea to apply the PIC method to the classical part in the semiclassical approach to quantum systems via path integral methods. One could estimate that if a thousands of classical paths are sufficient to describe the dynamics of one quantum particle, then millions classical paths could describe the dynamics of a quantum particle system. A PIC code in the frame of a semiclassical approach would therefore enable the investigation of a number of quantum phenomena, e.g., optical properties, electrical properties, and, ultimately, chemical reactions. In this contribution we explain the use of the PIC code yapic (developed by the authors) in the frame of the path integral method and discuss the numerical results for simple quantum phenomena, i.e., the quantum harmonic oscillator and quantum tunneling. This work is supported by the German Research Foundation in the frame of FOR 2093.

  5. Performance of particle in cell methods on highly concurrent computational architectures

    NASA Astrophysics Data System (ADS)

    Adams, M. F.; Ethier, S.; Wichmann, N.

    2007-07-01

    Particle in cell (PIC) methods are effective in computing Vlasov-Poisson system of equations used in simulations of magnetic fusion plasmas. PIC methods use grid based computations, for solving Poisson's equation or more generally Maxwell's equations, as well as Monte-Carlo type methods to sample the Vlasov equation. The presence of two types of discretizations, deterministic field solves and Monte-Carlo methods for the Vlasov equation, pose challenges in understanding and optimizing performance on today large scale computers which require high levels of concurrency. These challenges arises from the need to optimize two very different types of processes and the interactions between them. Modern cache based high-end computers have very deep memory hierarchies and high degrees of concurrency which must be utilized effectively to achieve good performance. The effective use of these machines requires maximizing concurrency by eliminating serial or redundant work and minimizing global communication. A related issue is minimizing the memory traffic between levels of the memory hierarchy because performance is often limited by the bandwidths and latencies of the memory system. This paper discusses some of the performance issues, particularly in regard to parallelism, of PIC methods. The gyrokinetic toroidal code (GTC) is used for these studies and a new radial grid decomposition is presented and evaluated. Scaling of the code is demonstrated on ITER sized plasmas with up to 16K Cray XT3/4 cores.

  6. AE3D

    SciTech Connect

    Spong, Donald A

    2016-06-20

    AE3D solves for the shear Alfven eigenmodes and eigenfrequencies in a torodal magnetic fusion confinement device. The configuration can be either 2D (e.g. tokamak, reversed field pinch) or 3D (e.g. stellarator, helical reversed field pinch, tokamak with ripple). The equations solved are based on a reduced MHD model and sound wave coupling effects are not currently included.

  7. Characterization of an SRF gun: a 3D full wave simulation

    SciTech Connect

    Wang, E.; Ben-Zvi, I.; Wang, J.

    2011-03-28

    We characterized a BNL 1.3GHz half-cell SRF gun is tested for GaAs photocathode. The gun already was simulated several years ago via two-dimensional (2D) numerical codes (i.e., Superfish and Parmela) with and without the beam. In this paper, we discuss our investigation of its characteristics using a three dimensional (3D) full-wave code (CST STUDIO SUITE{trademark}).The input/pickup couplers are sited symmetrically on the same side of the gun at an angle of 180{sup o}. In particular, the inner conductor of the pickup coupler is considerably shorter than that of the input coupler. We evaluated the cross-talk between the beam (trajectory) and the signal on the input coupler compared our findings with published results based on analytical models. The CST STUDIO SUITE{trademark} also was used to predict the field within the cavity; particularly, a combination of transient/eigenmode solvers was employed to accurately construct the RF field for the particles, which also includes the effects of the couplers. Finally, we explored the beam's dynamics with a particle in cell (PIC) simulation, validated the results and compare them with 2D code result.

  8. 3-D Finite Element Code Postprocessor

    SciTech Connect

    1996-07-15

    TAURUS is an interactive post-processing application supporting visualization of finite element analysis results on unstructured grids. TAURUS provides the ability to display deformed geometries and contours or fringes of a large number of derived results on meshes consisting of beam, plate, shell, and solid type finite elements. Time history plotting is also available.

  9. Parametric instabilities in 3D periodically focused beams with space charge

    NASA Astrophysics Data System (ADS)

    Hofmann, Ingo; Boine-Frankenheim, Oliver

    2017-01-01

    Parametric resonances of beam eigenmodes with a periodic focusing system under the effect of space charge—also called structural instabilities—are the collective counterparts to parametric resonances of single particles or of mechanical systems. Their common feature is that an exponential instability is driven by a temporal modulation of a system parameter. Thus, they are complementary to the more commonly considered space charge single particle resonances, where space charge pseudo-multipole terms are assumed to exist already at finite level in the initial distribution. This article elaborates on the characteristics of such parametric instabilities in 3D bunched beams—as typical in linear accelerators—for modes of second (envelope), third and fourth order, including the transverse coupled "sum envelope instabilities" recently discovered for 2D beams. Noteworthy results are the finding that parametric resonances can be in competition with single particle resonances of twice the order due to overlapping stopbands; furthermore the surprisingly good applicability of the stopband positions and widths obtained from previously published 2D linearised Vlasov stability theory to the 3D non-Kapchinskij-Vladimirskij particle-in-cell code studies presented here.

  10. NUBEAM developments and 3d halo modeling

    NASA Astrophysics Data System (ADS)

    Gorelenkova, M. V.; Medley, S. S.; Kaye, S. M.

    2012-10-01

    Recent developments related to the 3D halo model in NUBEAM code are described. To have a reliable halo neutral source for diagnostic simulation, the TRANSP/NUBEAM code has been enhanced with full implementation of ADAS atomic physic ground state and excited state data for hydrogenic beams and mixed species plasma targets. The ADAS codes and database provide the density and temperature dependence of the atomic data, and the collective nature of the state excitation process. To be able to populate 3D halo output with sufficient statistical resolution, the capability to control the statistics of fast ion CX modeling and for thermal halo launch has been added to NUBEAM. The 3D halo neutral model is based on modification and extension of the ``beam in box'' aligned 3d Cartesian grid that includes the neutral beam itself, 3D fast neutral densities due to CX of partially slowed down fast ions in the beam halo region, 3D thermal neutral densities due to CX deposition and fast neutral recapture source. More details on the 3D halo simulation design will be presented.

  11. 3-D Seismic Interpretation

    NASA Astrophysics Data System (ADS)

    Moore, Gregory F.

    2009-05-01

    This volume is a brief introduction aimed at those who wish to gain a basic and relatively quick understanding of the interpretation of three-dimensional (3-D) seismic reflection data. The book is well written, clearly illustrated, and easy to follow. Enough elementary mathematics are presented for a basic understanding of seismic methods, but more complex mathematical derivations are avoided. References are listed for readers interested in more advanced explanations. After a brief introduction, the book logically begins with a succinct chapter on modern 3-D seismic data acquisition and processing. Standard 3-D acquisition methods are presented, and an appendix expands on more recent acquisition techniques, such as multiple-azimuth and wide-azimuth acquisition. Although this chapter covers the basics of standard time processing quite well, there is only a single sentence about prestack depth imaging, and anisotropic processing is not mentioned at all, even though both techniques are now becoming standard.

  12. Radiochromic 3D Detectors

    NASA Astrophysics Data System (ADS)

    Oldham, Mark

    2015-01-01

    Radiochromic materials exhibit a colour change when exposed to ionising radiation. Radiochromic film has been used for clinical dosimetry for many years and increasingly so recently, as films of higher sensitivities have become available. The two principle advantages of radiochromic dosimetry include greater tissue equivalence (radiologically) and the lack of requirement for development of the colour change. In a radiochromic material, the colour change arises direct from ionising interactions affecting dye molecules, without requiring any latent chemical, optical or thermal development, with important implications for increased accuracy and convenience. It is only relatively recently however, that 3D radiochromic dosimetry has become possible. In this article we review recent developments and the current state-of-the-art of 3D radiochromic dosimetry, and the potential for a more comprehensive solution for the verification of complex radiation therapy treatments, and 3D dose measurement in general.

  13. Bootstrapping 3D fermions

    DOE PAGES

    Iliesiu, Luca; Kos, Filip; Poland, David; ...

    2016-03-17

    We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge CT. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  14. Bootstrapping 3D fermions

    SciTech Connect

    Iliesiu, Luca; Kos, Filip; Poland, David; Pufu, Silviu S.; Simmons-Duffin, David; Yacoby, Ran

    2016-03-17

    We study the conformal bootstrap for a 4-point function of fermions <ψψψψ> in 3D. We first introduce an embedding formalism for 3D spinors and compute the conformal blocks appearing in fermion 4-point functions. Using these results, we find general bounds on the dimensions of operators appearing in the ψ × ψ OPE, and also on the central charge CT. We observe features in our bounds that coincide with scaling dimensions in the GrossNeveu models at large N. Finally, we also speculate that other features could coincide with a fermionic CFT containing no relevant scalar operators.

  15. Accelerating a 3D finite-difference wave propagation code by a factor of 50 and a spectral-element code by a factor of 25 using a cluster of GPU graphics cards

    NASA Astrophysics Data System (ADS)

    Komatitsch, Dimitri; Michéa, David; Erlebacher, Gordon; Göddeke, Dominik

    2010-05-01

    We first accelerate a three-dimensional finite-difference in the time domain (FDTD) wave propagation code by a factor of about 50 using Graphics Processing Unit (GPU) computing on a cheap NVIDIA graphics card with the CUDA programming language. We implement the code in CUDA in the case of the fully heterogeneous elastic wave equation. We also implement Convolution Perfectly Matched Layers (CPMLs) on the graphics card to efficiently absorb outgoing waves on the fictitious edges of the grid. We show that the code that runs on the graphics card gives the expected results by comparing our results to those obtained by running the same simulation on a classical processor core. The methodology that we present can be used for Maxwell's equations as well because their form is similar to that of the seismic wave equation written in velocity vector and stress tensor. We then implement a high-order finite-element (spectral-element) application, which performs the numerical simulation of seismic wave propagation resulting for instance from earthquakes at the scale of a continent or from active seismic acquisition experiments in the oil industry, on a cluster of NVIDIA Tesla graphics cards using the CUDA programming language and non blocking message passing based on MPI. We compare it to the implementation in C language and MPI on a classical cluster of CPU nodes. We use mesh coloring to efficiently handle summation operations over degrees of freedom on an unstructured mesh, and we exchange information between nodes using non blocking MPI messages. Using non-blocking communications allows us to overlap the communications across the network and the data transfer between the GPU card and the CPU node on which it is installed with calculations on that GPU card. We perform a number of numerical tests to validate the single-precision CUDA and MPI implementation and assess its accuracy. We then analyze performance measurements and in average we obtain a speedup of 20x to 25x.

  16. 3D GRMHD and GRPIC Simulations of Disk-Jet Coupling and Emission

    SciTech Connect

    Nishikawa, Ken-Ichi; Mizuno, Y.; Watson, M.; Hardee, P.; Fuerst, S.; Wu, K.; Fishman, G.J.; /NASA, Marshall

    2006-12-19

    We investigate jet formation in black-hole systems using 3-D General Relativistic Particle-In-Cell (GRPIC) and 3-D GRMHD simulations. GRPIC simulations, which allow charge separations in a collisionless plasma, do not need to invoke the frozen condition as in GRMHD simulations. 3-D GRPIC simulations show that jets are launched from Kerr black holes as in 3-D GRMHD simulations, but jet formation in the two cases may not be identical. Comparative study of black hole systems with GRPIC and GRMHD simulations with the inclusion of radiate transfer will further clarify the mechanisms that drive the evolution of disk-jet systems.

  17. NIKE3D96. Static & Dynamic Response of 3D Solids

    SciTech Connect

    Maker, B.; Hallquist, J.O.; Ferencz, R.M.

    1991-02-01

    NIKE3D is a large deformations 3D finite element code used to obtain the resulting displacements and stresses from multi-body static and dynamic structural thermo-mechanics problems with sliding interfaces. Many nonlinear and temperature dependent constitutive models are available.

  18. Venus in 3D

    NASA Technical Reports Server (NTRS)

    Plaut, Jeffrey J.

    1993-01-01

    Stereographic images of the surface of Venus which enable geologists to reconstruct the details of the planet's evolution are discussed. The 120-meter resolution of these 3D images make it possible to construct digital topographic maps from which precise measurements can be made of the heights, depths, slopes, and volumes of geologic structures.

  19. 3D photoacoustic imaging

    NASA Astrophysics Data System (ADS)

    Carson, Jeffrey J. L.; Roumeliotis, Michael; Chaudhary, Govind; Stodilka, Robert Z.; Anastasio, Mark A.

    2010-06-01

    Our group has concentrated on development of a 3D photoacoustic imaging system for biomedical imaging research. The technology employs a sparse parallel detection scheme and specialized reconstruction software to obtain 3D optical images using a single laser pulse. With the technology we have been able to capture 3D movies of translating point targets and rotating line targets. The current limitation of our 3D photoacoustic imaging approach is its inability ability to reconstruct complex objects in the field of view. This is primarily due to the relatively small number of projections used to reconstruct objects. However, in many photoacoustic imaging situations, only a few objects may be present in the field of view and these objects may have very high contrast compared to background. That is, the objects have sparse properties. Therefore, our work had two objectives: (i) to utilize mathematical tools to evaluate 3D photoacoustic imaging performance, and (ii) to test image reconstruction algorithms that prefer sparseness in the reconstructed images. Our approach was to utilize singular value decomposition techniques to study the imaging operator of the system and evaluate the complexity of objects that could potentially be reconstructed. We also compared the performance of two image reconstruction algorithms (algebraic reconstruction and l1-norm techniques) at reconstructing objects of increasing sparseness. We observed that for a 15-element detection scheme, the number of measureable singular vectors representative of the imaging operator was consistent with the demonstrated ability to reconstruct point and line targets in the field of view. We also observed that the l1-norm reconstruction technique, which is known to prefer sparseness in reconstructed images, was superior to the algebraic reconstruction technique. Based on these findings, we concluded (i) that singular value decomposition of the imaging operator provides valuable insight into the capabilities of

  20. Particle-in-cell simulation of large amplitude ion-acoustic solitons

    SciTech Connect

    Sharma, Sarveshwar Sengupta, Sudip; Sen, Abhijit

    2015-02-15

    The propagation of large amplitude ion-acoustic solitons is studied in the laboratory frame (x, t) using a 1-D particle-in-cell code that evolves the ion dynamics by treating them as particles but assumes the electrons to follow the usual Boltzmann distribution. It is observed that for very low Mach numbers the simulation results closely match the Korteweg-de Vries soliton solutions, obtained in the wave frame, and which propagate without distortion. The collision of two such profiles is observed to exhibit the usual solitonic behaviour. As the Mach number is increased, the given profile initially evolves and then settles down to the exact solution of the full non-linear Poisson equation, which then subsequently propagates without distortion. The fractional change in amplitude is found to increase linearly with Mach number. It is further observed that initial profiles satisfying k{sup 2}λ{sub de}{sup 2}<1 break up into a series of solitons.

  1. Taking larger timesteps with speed-limited particle-in-cell simulation

    NASA Astrophysics Data System (ADS)

    Werner, Gregory; Cary, John

    2015-11-01

    Particle-in-cell (PIC) simulation is often impractical because it includes too much unnecessary physics. For example, to avoid instability in many simulations the timestep must be small enough to resolve the plasma frequency, even if plasma oscillations do not play a significant role. Other methods (e.g., MHD/fluid and hybrid approaches) allow faster simulation, but often don't include enough physics. A new method, speed-limited PIC (SLPIC) simulation, offers kinetic simulation with an arbitrary-strength approximation tied to the timestep. With a small (standard PIC) timestep, SLPIC is identical to PIC, while a larger timestep (e.g., large compared to the inverse plasma frequency) results in the relaxation of fast particles over slower timescales. SLPIC is therefore useful in situations where the particle distribution functions change slowly compared to the timestep required by PIC. For example, SLPIC can simulate collisionless sheaths with a timestep hundreds of times larger than the inverse plasma frequency. SLPIC involves relatively isolated changes of a standard PIC code and poses no extra difficulties for parallelism; complexities of PIC, such as field solvers, collisions, and boundary conditions, carry over naturally to SLPIC with little change. This work is supported by NASA.

  2. Particle-in-Cell Modeling of Magnetized Argon Plasma Flow Through Small Mechanical Apertures

    SciTech Connect

    Adam B. Sefkow and Samuel A. Cohen

    2009-04-09

    Motivated by observations of supersonic argon-ion flow generated by linear helicon-heated plasma devices, a three-dimensional particle-in-cell (PIC) code is used to study whether stationary electrostatic layers form near mechanical apertures intersecting the flow of magnetized plasma. By self-consistently evaluating the temporal evolution of the plasma in the vicinity of the aperture, the PIC simulations characterize the roles of the imposed aperture and applied magnetic field on ion acceleration. The PIC model includes ionization of a background neutral-argon population by thermal and superthermal electrons, the latter found upstream of the aperture. Near the aperture, a transition from a collisional to a collisionless regime occurs. Perturbations of density and potential, with mm wavelengths and consistent with ion acoustic waves, propagate axially. An ion acceleration region of length ~ 200-300 λD,e forms at the location of the aperture and is found to be an electrostatic double layer, with axially-separated regions of net positive and negative charge. Reducing the aperture diameter or increasing its length increases the double layer strength.

  3. 2D Kinetic Particle in Cell Simulations of a Shear-Flow Stabilized Z-Pinch

    NASA Astrophysics Data System (ADS)

    Tummel, Kurt; Higginson, Drew; Schmidt, Andrea; Link, Anthony; McLean, Harry; Shumlak, Uri; Nelson, Brian; Golingo, Raymond; Claveau, Elliot; Lawrence Livermore National Lab Team; University of Washington Team

    2016-10-01

    The Z-pinch is a relatively simple and attractive potential fusion reactor design, but attempts to develop such a reactor have consistently struggled to overcome Z-pinch instabilities. The ``sausage'' and ``kink'' modes are among the most robust and prevalent Z-pinch instabilities, but theory and simulations suggest that axial flow-shear, dvz / dr ≠ 0 , can suppress these modes. Experiments have confirmed that Z-pinch plasmas with embedded axial flow-shear display a significantly enhanced resilience to the sausage and kink modes at a demonstration current of 50kAmps. A new experiment is under way to test the concept at higher current, and efforts to model these plasmas are being expanded. The performance and stability of these devices will depend on features like the plasma viscosity, anomalous resistivity, and finite Larmor radius effects, which are most accurately characterized in kinetic models. To predict these features, kinetic simulations using the particle in cell code LSP are now in development, and initial benchmarking and 2D stability analyses of the sausage mode are presented here. These results represent the first kinetic modeling of the flow-shear stabilized Z-pinch. This work is funded by the USDOE/ARPAe Alpha Program. Prepared by LLNL under Contract DE-AC52-07NA27344.

  4. Hybrid particle-in-cell simulations of weakly collisional shock formation

    NASA Astrophysics Data System (ADS)

    Spisak, Jacob; Valenzuela, Julio; Kim, Joohwan; Beg, Farhat

    2016-10-01

    Recently, we studied shock formation by the head on collision of supersonic plasma jets using a wire configuration on the compact current driver GenASIS (200 kA in 150 ns). We used two wire materials: aluminum, where radiative cooling is not significant, and copper, where radiation is important to shock dynamics. In both cases, when the jets collide a conical structure develops in time and moves towards the cathode at a speed of 20km/s. Radiation effects are apparent in the copper case, as the shock is thinner than in the Aluminum case and when it starts moving a prominent bow shock develops. Furthermore, the estimated inter jet ion mean free path is larger than the shock width, indicating a magnetic field may help mediate the shock. To investigate the physics of weakly collisional shock formation, we perform two dimensional simulations of two merging, counter-propagating jets using the initial conditions from the experiment. Electrons are treated as a fluid and ions are treated as kinetic particles using the hybrid particle in cell code LSP. We explore how shock formation is affected by radiative cooling and the presence of an external magnetic field. We also carried out simulations where both ions and electrons were treated as fluids. This work was partially financed by Department of Energy Grant Number DE-SC0014493.

  5. Particle-in-cell δf gyrokinetic simulations of the microtearing mode

    SciTech Connect

    Chowdhury, J.; Chen, Yang; Wan, Weigang; Parker, Scott E.; Guttenfelder, W.; Canik, J. M.

    2016-01-15

    The linear stability properties of the microtearing mode are investigated in the edge and core regimes of the National Spherical Torus Experiment (NSTX) using the particle-in-cell method based gyrokinetic code GEM. The dependence of the mode on various equilibrium quantities in both regions is compared. While the microtearing mode in the core depends upon the electron-ion collisions, in the edge region, it is found to be weakly dependent on the collisions and exists even when the collision frequency is zero. The electrostatic potential is non-negligible in each of the cases. It plays opposite roles in the core and edge of NSTX. While the microtearing mode is partially stabilized by the electrostatic potential in the core, it has substantial destabilizing effect in the edge. In addition to the spherical tokamak, we also study the microtearing mode for parameters relevant to the core of a standard tokamak. The fundamental characteristics of the mode remain the same; however, the electrostatic potential in this case is destabilizing as opposed to the core of NSTX. The velocity dependence of the collision frequency, which is crucial for the mode to grow in slab calculations, is not required to destabilize the mode in toroidal devices.

  6. Unphysical kinetic effects in particle-in-cell modeling of laser wakefield accelerators.

    PubMed

    Cormier-Michel, Estelle; Shadwick, B A; Geddes, C G R; Esarey, E; Schroeder, C B; Leemans, W P

    2008-07-01

    Unphysical heating and macroparticle trapping that arise in the numerical modeling of laser wakefield accelerators using particle-in-cell codes are investigated. A dark current free laser wakefield accelerator stage, in which no trapping of background plasma electrons into the plasma wave should occur, and a highly nonlinear cavitated wake with self-trapping, are modeled. Numerical errors can lead to errors in the macroparticle orbits in both phase and momentum. These errors grow as a function of distance behind the drive laser and can be large enough to result in unphysical trapping in the plasma wake. The resulting numerical heating in intense short-pulse laser-plasma interactions grows much faster and to a higher level than the known numerical grid heating of an initially warm plasma in an undriven system. The amount of heating, at least in the region immediately behind the laser pulse, can, in general, be decreased by decreasing the grid size, increasing the number of particles per cell, or using smoother interpolation methods. The effect of numerical heating on macroparticle trapping is less severe in a highly nonlinear cavitated wake, since trapping occurs in the first plasma wave period immediately behind the laser pulse.

  7. Nonlinear kinetic effects in inductively coupled plasmas via particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Froese, Aaron; Smolyakov, Andrei; Sydorenko, Dmytro

    2007-11-01

    Kinetic effects in inductively coupled plasmas due to thermal motion of particles modified by self-consistent magnetic fields are studied using a particle-in-cell code. In the low pressure, low frequency regime, electron mean free paths are large relative to device size and the trajectories are strongly curved by the induced rf magnetic field. Analytic linear theories are unable to recover effects accumulated along each nonlinear path. Therefore, the simulated ICP is made progressively more complex to find the source of observed plasma behaviours. With only thermal motion modifying the wave-particle interaction, nonlocal behaviour becomes dominant at low frequencies, causing an anomalous skin effect with increased skin depth and power absorption and decreased ponderomotive force. However, when influenced by magnetic fields, the nonlocal effects are suppressed at large wave amplitudes due to nonlinear trapping. A mechanism is proposed for this low frequency restoration of local behaviour. Finally, a low rate of electron-neutral collisions is found to counteract the nonlinear behaviour, and hence reinforces nonlocal behaviour.

  8. Particle-in-cell Simulations of Raman Laser Amplification in Preformed Plasmas

    SciTech Connect

    Daniel S. Clark; Nathaniel J. Fisch

    2003-06-27

    Two critical issues in the amplification of laser pulses by backward Raman scattering in plasma slabs are the saturation mechanism of the amplification effect (which determines the maximum attainable output intensity of a Raman amplifier) and the optimal plasma density for amplification. Previous investigations [V.M. Malkin, et al., Phys. Rev. Lett., 82 (22):4448-4451, 1999] identified forward Raman scattering and modulational instabilities of the amplifying seed as the likely saturation mechanisms and lead to an estimated unfocused output intensities of 10{sup 17}W/cm{sup 2}. The optimal density for amplification is determined by the competing constraints of minimizing the plasma density so as to minimize the growth rate of the instabilities leading to saturation but also maintaining the plasma sufficiently dense that the driven Langmuir wave responsible for backscattering does not break prematurely. Here, particle-in-cell code are simulations presented which verify that saturation of backward Raman amplification does occur at intensities of {approx}10{sup 17}W/cm{sup 2} by forward Raman scattering and modulational instabilities. The optimal density for amplification in a plasma with the representative temperature of T(sub)e = 200 eV is also shown in these simulations to be intermediate between the cold plasma wave-breaking density and the density limit found by assuming a water bag electron distribution function.

  9. External circuit integration with electromagnetic particle in cell modeling of plasma focus devices

    SciTech Connect

    Seng, Y. S.; Lee, P.; Rawat, R. S.

    2015-03-15

    The pinch performance of a plasma focus (PF) device is sensitive to the physical conditions of the breakdown phase. It is therefore essential to model and study the initial phase in order to optimize device performance. An external circuit is self consistently coupled to the electromagnetic particle in cell code to model the breakdown and initial lift phase of the United Nations University/International Centre for Theoretical Physics (UNU-ICTP) plasma focus device. Gas breakdown during the breakdown phase is simulated successfully, following a drop in the applied voltage across the device and a concurrent substantial rise in the circuit current. As a result, the plasma becomes magnetized, with the growing value of the magnetic field over time leading to the gradual lift off of the well formed current sheath into the axial acceleration phase. This lifting off, with simultaneous outward sheath motion along the anode and vertical cathode, and the strong magnetic fields in the current sheath region, was demonstrated in this work, and hence validates our method of coupling the external circuit to PF devices. Our method produces voltage waveforms that are qualitatively similar to the observed experimental voltage profiles of the UNU-ICTP device. Values of the mean electron energy before and after voltage breakdown turned out to be different, with the values after breakdown being much lower. In both cases, the electron energy density function turned out to be non-Maxwellian.

  10. Particle-in-cell simulations of electron acceleration by a simple capacitative antenna in collisionless plasma

    NASA Astrophysics Data System (ADS)

    Dieckmann, M. E.; Rowlands, G.; Eliasson, B.; Shukla, P. K.

    2004-12-01

    We examine the electron acceleration by a localized electrostatic potential oscillating at high frequencies by means of particle-in-cell (PIC) simulations, in which we apply oscillating electric fields to two neighboring simulation cells. We derive an analytic model for the direct electron heating by the externally driven antenna electric field, and we confirm that it approximates well the electron heating obtained in the simulations. In the simulations, transient waves accelerate electrons in a sheath surrounding the antenna. This increases the Larmor radii of the electrons close to the antenna, and more electrons can reach the antenna location to interact with the externally driven fields. The resulting hot electron sheath is dense enough to support strong waves that produce high-energy sounder-accelerated electrons (SAEs) by their nonlinear interaction with the ambient electrons. By increasing the emission amplitudes in our simulations to values that are representative for the ones of the sounder on board the OEDIPUS C (OC) satellites, we obtain electron acceleration into the energy range which is comparable to the 20 keV energies of the SAE observed by the OC mission. The emission also triggers stable electrostatic waves oscillating at frequencies close to the first harmonic of the electron cyclotron frequency. We find this to be an encouraging first step of examining SAE generation with kinetic numerical simulation codes.

  11. Three-dimensional particle-in-cell simulations of rapid start-up in strapped oven magnetrons due to variation in the insulating magnetic field

    NASA Astrophysics Data System (ADS)

    Luginsland, J. W.; Lau, Y. Y.; Neculaes, V. B.; Gilgenbach, R. M.; Jones, M. C.; Frese, M. H.; Watrous, J. J.

    2004-06-01

    A three-dimensional parallel particle-in-cell code, ICEPIC, is used to simulate the geometry and the magnetic field profiles of the recent low-noise, fast startup magnetron experiments at the University of Michigan. The fast startup, the power levels, and the starting currents that have been observed in these experiments are quantitatively reproduced in the simulations. The tendency for low noise operation has also been reproduced with the use of an azimuthally varying magnetic field.

  12. Self-consistent particle-in-cell modelling of short pulse absorption and transport for high energy density physics experiments

    NASA Astrophysics Data System (ADS)

    Ramsay, M. G.; Arber, T. D.; Sircombe, N. J.

    2016-03-01

    In order for detailed, solid density particle-in-cell (PIC) simulations to run within a reasonable time frame, novel approaches to modelling high density material must be employed. For the purposes of modelling high intensity, short pulse laser-plasma interactions, however, these approaches must be consistent with retaining a full PIC model in the low-density laser interaction region. By replacing the standard Maxwell field solver with an electric field update based on a simplified Ohm's law in regions of high electron density, it is possible to access densities at and above solid without being subject to the standard grid and time step constraints. Such a model has recently been implemented in the PIC code EPOCH. We present the initial results of a detailed two-dimensional simulation performed to compare the adapted version of the code with recent experimental results from the Orion laser facility.

  13. Study on the After Cavity Interaction in a 140 GHz Gyrotron Using 3D CFDTD PIC Simulations

    NASA Astrophysics Data System (ADS)

    Lin, M. C.; Illy, S.; Avramidis, K.; Thumm, M.; Jelonnek, J.

    2016-10-01

    A computational study on after cavity interaction (ACI) in a 140 GHz gryotron for fusion research has been performed using a 3-D conformal finite-difference time-domain (CFDTD) particle-in-cell (PIC) method. The ACI, i.e. beam wave interaction in the non-linear uptaper after the cavity has attracted a lot of attention and been widely investigated in recent years. In a dynamic ACI, a TE mode is excited by the electron beam at the same frequency as in the cavity, and the same mode is also interacting with the spent electron beam at a different frequency in the non-linear uptaper after the cavity while in a static ACI, a mode interacts with the beam both at the cavity and at the uptaper, but at the same frequency. A previous study on the dynamic ACI on a 140 GHz gyrotron has concluded that more advanced numerical simulations such as particle-in-cell (PIC) modeling should be employed to study or confirm the dynamic ACI in addition to using trajectory codes. In this work, we use a 3-D full wave time domain simulation based on the CFDTD PIC method to include the rippled-wall launcher of the quasi-optical output coupler into the simulations which breaks the axial symmetry of the original model employing a symmetric one. A preliminary simulation result has confirmed the dynamic ACI effect in this 140 GHz gyrotron in good agreement with the former study. A realistic launcher will be included in the model for studying the dynamic ACI and compared with the homogenous one.

  14. Low-noise Collision Operators for Particle-in-cell Simulations

    SciTech Connect

    J.L.V. Lewandowski

    2005-03-08

    A new method to implement low-noise collision operators in particle-in-cell simulations is presented. The method is based on the fact that relevant collision operators can be included naturally in the Lagrangian formulation that exemplifies the particle-in-cell simulation method. Numerical simulations show that the momentum and energy conservation properties of the simulated plasma associated with the low-noise collision operator are improved as compared with standard collision algorithms based on random numbers.

  15. Restructuring of RELAP5-3D

    SciTech Connect

    George Mesina; Joshua Hykes

    2005-09-01

    The RELAP5-3D source code is unstructured with many interwoven logic flow paths. By restructuring the code, it becomes easier to read and understand, which reduces the time and money required for code development, debugging, and maintenance. A structured program is comprised of blocks of code with one entry and exit point and downward logic flow. IF tests and DO loops inherently create structured code, while GOTO statements are the main cause of unstructured code. FOR_STRUCT is a commercial software package that converts unstructured FORTRAN into structured programming; it was used to restructure individual subroutines. Primarily it transforms GOTO statements, ARITHMETIC IF statements, and COMPUTED GOTO statements into IF-ELSEIF-ELSE tests and DO loops. The complexity of RELAP5-3D complicated the task. First, FOR_STRUCT cannot completely restructure all the complex coding contained in RELAP5-3D. An iterative approach of multiple FOR_STRUCT applications gave some additional improvements. Second, FOR_STRUCT cannot restructure FORTRAN 90 coding, and RELAP5-3D is partially written in FORTRAN 90. Unix scripts for pre-processing subroutines into coding that FOR_STRUCT could handle and post-processing it back into FORTRAN 90 were written. Finally, FOR_STRUCT does not have the ability to restructure the RELAP5-3D code which contains pre-compiler directives. Variations of a file were processed with different pre-compiler options switched on or off, ensuring that every block of code was restructured. Then the variations were recombined to create a completely restructured source file. Unix scripts were written to perform these tasks, as well as to make some minor formatting improvements. In total, 447 files comprising some 180,000 lines of FORTRAN code were restructured. These showed significant reduction in the number of logic jumps contained as measured by reduction in the number of GOTO statements and line labels. The average number of GOTO statements per subroutine

  16. Influence of the parallel nonlinearity on zonal flows and heat transport in global gyrokinetic particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Jolliet, S.; McMillan, B. F.; Vernay, T.; Villard, L.; Hatzky, R.; Bottino, A.; Angelino, P.

    2009-07-01

    In this paper, the influence of the parallel nonlinearity on zonal flows and heat transport in global particle-in-cell ion-temperature-gradient simulations is studied. Although this term is in theory orders of magnitude smaller than the others, several authors [L. Villard, P. Angelino, A. Bottino et al., Plasma Phys. Contr. Fusion 46, B51 (2004); L. Villard, S. J. Allfrey, A. Bottino et al., Nucl. Fusion 44, 172 (2004); J. C. Kniep, J. N. G. Leboeuf, and V. C. Decyck, Comput. Phys. Commun. 164, 98 (2004); J. Candy, R. E. Waltz, S. E. Parker et al., Phys. Plasmas 13, 074501 (2006)] found different results on its role. The study is performed using the global gyrokinetic particle-in-cell codes TORB (theta-pinch) [R. Hatzky, T. M. Tran, A. Könies et al., Phys. Plasmas 9, 898 (2002)] and ORB5 (tokamak geometry) [S. Jolliet, A. Bottino, P. Angelino et al., Comput. Phys. Commun. 177, 409 (2007)]. In particular, it is demonstrated that the parallel nonlinearity, while important for energy conservation, affects the zonal electric field only if the simulation is noise dominated. When a proper convergence is reached, the influence of parallel nonlinearity on the zonal electric field, if any, is shown to be small for both the cases of decaying and driven turbulence.

  17. Electromagnetic Particle-in-Cell Simulations of the Solar Wind Interaction with Lunar Magnetic Anomalies: Interaction Mechanisms Under Varying Solar Wind Conditions.

    NASA Astrophysics Data System (ADS)

    Deca, Jan; Divin, Andrey; Lapenta, Giovanni; Lembège, Bertrand; Markidis, Stefano; Horányi, Mihály

    2015-04-01

    We present three-dimensional fully kinetic and electromagnetic simulations of the solar wind interaction with lunar crustal magnetic anomalies (LMAs). Using the implicit particle-in-cell code iPic3D, we confirm that LMAs may indeed be strong enough to stand off the solar wind from directly impacting the lunar surface forming a mini-magnetosphere, as suggested by spacecraft observations and theory. In contrast to earlier MHD and hybrid simulations, the fully kinetic nature of iPic3D allows to investigate the space charge effects and in particular the electron dynamics dominating the near-surface lunar plasma environment. We describe the general picture of the interaction of a dipole model centered just below the lunar surface under various solar wind and plasma conditions, and focus afterwards on the ion and electron kinetic behavior of the system. It is shown that the configuration is dominated by electron motion, because the LMA scale size is small with respect to the gyroradius of the solar wind ions. We identify a population of backstreaming ions, the deflection of magnetized electrons via the ExB-drift motion and the subsequent formation of a halo region of elevated density around the dipole source. Finally, it is shown that the presence and efficiency of the latter mechanisms are heavily impacted by the upstream plasma conditions and, on their turn, influence the overall structure and evolution of the LMA system. Our work opens new frontiers of research toward a deeper understanding of LMAs and is ideally suited to be compared with field or particle observations from spacecraft such as Kaguya (SELENE), Lunar Prospector or ARTEMIS. The ability to evaluate the implications for future lunar exploration as well as lunar science in general hinges on a better understanding of LMAs. This research has received funding from the European Commission's FP7 Program with the grant agreement SWIFF (project 2633430, swiff.eu) and EHEROES (project 284461, www.eheroes.eu). The

  18. Twin Peaks - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    The two hills in the distance, approximately one to two kilometers away, have been dubbed the 'Twin Peaks' and are of great interest to Pathfinder scientists as objects of future study. 3D glasses are necessary to identify surface detail. The white areas on the left hill, called the 'Ski Run' by scientists, may have been formed by hydrologic processes.

    The IMP is a stereo imaging system with color capability provided by 24 selectable filters -- twelve filters per 'eye.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  19. 3D and beyond

    NASA Astrophysics Data System (ADS)

    Fung, Y. C.

    1995-05-01

    This conference on physiology and function covers a wide range of subjects, including the vasculature and blood flow, the flow of gas, water, and blood in the lung, the neurological structure and function, the modeling, and the motion and mechanics of organs. Many technologies are discussed. I believe that the list would include a robotic photographer, to hold the optical equipment in a precisely controlled way to obtain the images for the user. Why are 3D images needed? They are to achieve certain objectives through measurements of some objects. For example, in order to improve performance in sports or beauty of a person, we measure the form, dimensions, appearance, and movements.

  20. 3D Audio System

    NASA Technical Reports Server (NTRS)

    1992-01-01

    Ames Research Center research into virtual reality led to the development of the Convolvotron, a high speed digital audio processing system that delivers three-dimensional sound over headphones. It consists of a two-card set designed for use with a personal computer. The Convolvotron's primary application is presentation of 3D audio signals over headphones. Four independent sound sources are filtered with large time-varying filters that compensate for motion. The perceived location of the sound remains constant. Possible applications are in air traffic control towers or airplane cockpits, hearing and perception research and virtual reality development.

  1. Magmatic Systems in 3-D

    NASA Astrophysics Data System (ADS)

    Kent, G. M.; Harding, A. J.; Babcock, J. M.; Orcutt, J. A.; Bazin, S.; Singh, S.; Detrick, R. S.; Canales, J. P.; Carbotte, S. M.; Diebold, J.

    2002-12-01

    Multichannel seismic (MCS) images of crustal magma chambers are ideal targets for advanced visualization techniques. In the mid-ocean ridge environment, reflections originating at the melt-lens are well separated from other reflection boundaries, such as the seafloor, layer 2A and Moho, which enables the effective use of transparency filters. 3-D visualization of seismic reflectivity falls into two broad categories: volume and surface rendering. Volumetric-based visualization is an extremely powerful approach for the rapid exploration of very dense 3-D datasets. These 3-D datasets are divided into volume elements or voxels, which are individually color coded depending on the assigned datum value; the user can define an opacity filter to reject plotting certain voxels. This transparency allows the user to peer into the data volume, enabling an easy identification of patterns or relationships that might have geologic merit. Multiple image volumes can be co-registered to look at correlations between two different data types (e.g., amplitude variation with offsets studies), in a manner analogous to draping attributes onto a surface. In contrast, surface visualization of seismic reflectivity usually involves producing "fence" diagrams of 2-D seismic profiles that are complemented with seafloor topography, along with point class data, draped lines and vectors (e.g. fault scarps, earthquake locations and plate-motions). The overlying seafloor can be made partially transparent or see-through, enabling 3-D correlations between seafloor structure and seismic reflectivity. Exploration of 3-D datasets requires additional thought when constructing and manipulating these complex objects. As numbers of visual objects grow in a particular scene, there is a tendency to mask overlapping objects; this clutter can be managed through the effective use of total or partial transparency (i.e., alpha-channel). In this way, the co-variation between different datasets can be investigated

  2. 3D Surgical Simulation

    PubMed Central

    Cevidanes, Lucia; Tucker, Scott; Styner, Martin; Kim, Hyungmin; Chapuis, Jonas; Reyes, Mauricio; Proffit, William; Turvey, Timothy; Jaskolka, Michael

    2009-01-01

    This paper discusses the development of methods for computer-aided jaw surgery. Computer-aided jaw surgery allows us to incorporate the high level of precision necessary for transferring virtual plans into the operating room. We also present a complete computer-aided surgery (CAS) system developed in close collaboration with surgeons. Surgery planning and simulation include construction of 3D surface models from Cone-beam CT (CBCT), dynamic cephalometry, semi-automatic mirroring, interactive cutting of bone and bony segment repositioning. A virtual setup can be used to manufacture positioning splints for intra-operative guidance. The system provides further intra-operative assistance with the help of a computer display showing jaw positions and 3D positioning guides updated in real-time during the surgical procedure. The CAS system aids in dealing with complex cases with benefits for the patient, with surgical practice, and for orthodontic finishing. Advanced software tools for diagnosis and treatment planning allow preparation of detailed operative plans, osteotomy repositioning, bone reconstructions, surgical resident training and assessing the difficulties of the surgical procedures prior to the surgery. CAS has the potential to make the elaboration of the surgical plan a more flexible process, increase the level of detail and accuracy of the plan, yield higher operative precision and control, and enhance documentation of cases. Supported by NIDCR DE017727, and DE018962 PMID:20816308

  3. Martian terrain - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    An area of rocky terrain near the landing site of the Sagan Memorial Station can be seen in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. This image is part of a 3D 'monster' panorama of the area surrounding the landing site.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  4. Particle-in-cell Simulations of Stimulated Raman Scattering

    NASA Astrophysics Data System (ADS)

    Winjum, B. J.; Fahlen, J.; Tsung, F. S.; Mori, W. B.; Hinkel, D. E.; Langdon, A. B.

    2006-10-01

    Using the full-PIC code OSIRIS, we have studied stimulated Raman scattering (SRS) over a wide range of parameters relevant to NIF. The role of beat-wave damping as a saturation mechanism is explored, as well as its relationship to other nonlinear effects which have previously been used to explain SRS behavior in NIF-relevant plasmas. Vu et al., have proposed that a nonlinear frequency shift due to the trapped particles detunes the instability, Brunner and Valeo argue that the trapped-particle instability is one of the dominant saturation mechanisms, while L. Yin et al., claim that electron beam acoustic modes are important. We will discuss the role played by each of these effects in OSIRIS simulations, as well as the importance of plasma wave convection on the recurrence of SRS reflectivity. We will also discuss how SRS behavior changes as the electron density and temperature are varied.

  5. 3D Simulation: Microgravity Environments and Applications

    NASA Technical Reports Server (NTRS)

    Hunter, Steve L.; Dischinger, Charles; Estes, Samantha; Parker, Nelson C. (Technical Monitor)

    2001-01-01

    Most, if not all, 3-D and Virtual Reality (VR) software programs are designed for one-G gravity applications. Space environments simulations require gravity effects of one one-thousandth to one one-million of that of the Earth's surface (10(exp -3) - 10(exp -6) G), thus one must be able to generate simulations that replicate those microgravity effects upon simulated astronauts. Unfortunately, the software programs utilized by the National Aeronautical and Space Administration does not have the ability to readily neutralize the one-G gravity effect. This pre-programmed situation causes the engineer or analysis difficulty during micro-gravity simulations. Therefore, microgravity simulations require special techniques or additional code in order to apply the power of 3D graphic simulation to space related applications. This paper discusses the problem and possible solutions to allow microgravity 3-D/VR simulations to be completed successfully without program code modifications.

  6. Particle-in-cell simulations of Magnetic Field Generation, Evolution, and Reconnection in Laser-driven Plasmas

    NASA Astrophysics Data System (ADS)

    Matteucci, Jack; Moissard, Clément; Fox, Will; Bhattacharjee, Amitava

    2016-10-01

    The advent of high-energy-density physics facilities has introduced the opportunity to experimentally investigate magnetic field dynamics relevant to both ICF and astrophysical plasmas. Recent experiments have demonstrated magnetic reconnection between colliding plasma plumes, where the reconnecting magnetic fields were self-generated in the plasma by the Biermann battery effect. In this study, we simulate these experiments from first principles using 2-D and 3-D particle-in-cell simulations. Simulations self-consistently demonstrate magnetic field generation by the Biermann battery effect, followed by advection by the Hall effect and ion flow. In 2-D simulations, we find in both the collisionless case and the semi-collisional case, defined by eVi × B >> Rei /ne (where Rei is the electron ion momentum transfer) that quantitative agreement with the generalized Ohm's law is only obtained with the inclusion of the pressure tensor. Finally, we document that significant field is destroyed at the reconnection site by the Biermann term, an inverse, `anti-Biermann' effect, which has not been considered previously in analysis of the experiment. The role of the anti-Biermann effect will be compared to standard reconnection mechanisms in 3-D reconnection simulations. This research used resources of the ORLC Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. DoE under Contract No. DE-AC05-00OR22725.

  7. Three-dimensional gyrokinetic particle-in-cell simulation of plasmas on a massively parallel computer: Final report on LDRD Core Competency Project, FY 1991--FY 1993

    SciTech Connect

    Byers, J.A.; Williams, T.J.; Cohen, B.I.; Dimits, A.M.

    1994-04-27

    One of the programs of the Magnetic fusion Energy (MFE) Theory and computations Program is studying the anomalous transport of thermal energy across the field lines in the core of a tokamak. We use the method of gyrokinetic particle-in-cell simulation in this study. For this LDRD project we employed massively parallel processing, new algorithms, and new algorithms, and new formal techniques to improve this research. Specifically, we sought to take steps toward: researching experimentally-relevant parameters in our simulations, learning parallel computing to have as a resource for our group, and achieving a 100 {times} speedup over our starting-point Cray2 simulation code`s performance.

  8. Particle-in-cell modeling for MJ scale dense plasma focus with varied anode shape

    SciTech Connect

    Link, A. Halvorson, C. Schmidt, A.; Hagen, E. C.; Rose, D. V.; Welch, D. R.

    2014-12-15

    Megajoule scale dense plasma focus (DPF) Z-pinches with deuterium gas fill are compact devices capable of producing 10{sup 12} neutrons per shot but past predictive models of large-scale DPF have not included kinetic effects such as ion beam formation or anomalous resistivity. We report on progress of developing a predictive DPF model by extending our 2D axisymmetric collisional kinetic particle-in-cell (PIC) simulations from the 4 kJ, 200 kA LLNL DPF to 1 MJ, 2 MA Gemini DPF using the PIC code LSP. These new simulations incorporate electrodes, an external pulsed-power driver circuit, and model the plasma from insulator lift-off through the pinch phase. To accommodate the vast range of relevant spatial and temporal scales involved in the Gemini DPF within the available computational resources, the simulations were performed using a new hybrid fluid-to-kinetic model. This new approach allows single simulations to begin in an electron/ion fluid mode from insulator lift-off through the 5-6 μs run-down of the 50+ cm anode, then transition to a fully kinetic PIC description during the run-in phase, when the current sheath is 2-3 mm from the central axis of the anode. Simulations are advanced through the final pinch phase using an adaptive variable time-step to capture the fs and sub-mm scales of the kinetic instabilities involved in the ion beam formation and neutron production. Validation assessments are being performed using a variety of different anode shapes, comparing against experimental measurements of neutron yield, neutron anisotropy and ion beam production.

  9. Delta-f particle-in-cell simulation of X-B mode conversion

    NASA Astrophysics Data System (ADS)

    Xiang, N.; Cary, J. R.; Barnes, D. C.; Carlsson, J.

    2006-04-01

    Low-noise, delta-f particle-in-cell algorithm has been implemented in VORPAL, a massive parallel, hybrid plasma modeling code (Chet Nieter and John. R. Cary, J. Comp. Physics 196, 448 (2004)). This computation method allows us to simulate the mode conversion between the extraordinary wave (X) and electron Bernstein wave (EBW) in both linear and nonlinear regimes. In the linear regime, it is found that a full X-B mode conversion can be obtained for optimized parameters as φ/φce<2 (φ is the driving frequency and φce is the electron cyclotron frequency). No 100% conversion is found for φ/φce moderately larger than 2. The simulation results agree with the predictions of Ram's theory (Ram & Schultz, Phys. Plasma 4084 (2000)). The agreement indicates that X-B mode conversion can be well described by the quadratic wave equation based on cold plasma approximation, and this is consistent with the phase-space picture of mode conversion. It is also shown that the conversion efficiency is significantly affected by the gradient of magnetic fields. When the amplitude of the incident X wave increases, it is shown that the nonlinear self-interaction of the electron converted EBW gives rise to the second harmonic generation at a pump power as low as three orders smaller than the electron thermal energy. If the fundamental EBW is sufficiently large, the non-propagating third and fourth harmonic modes are also generated. *The work was supported by DOE Contract No.DE-FG02-04ER54735.

  10. Particle-In-Cell Analysis of an Electric Antenna for the BepiColombo/MMO spacecraft

    NASA Astrophysics Data System (ADS)

    Miyake, Yohei; Usui, Hideyuki; Kojima, Hirotsugu

    The BepiColombo/MMO spacecraft is planned to provide a first electric field measurement in Mercury's magnetosphere by mounting two types of the electric antennas: WPT and MEFISTO. The sophisticated calibration of such measurements should be performed based on precise knowledge of the antenna characteristics in space plasma. However, it is difficult to know prac-tical antenna characteristics considering the plasma kinetics and spacecraft-plasma interactions by means of theoretical approaches. Furthermore, some modern antenna designing techniques such as a "hockey puck" principle is applied to MEFISTO, which introduces much complexity in its overall configuration. Thus a strong demand arises regarding the establishment of a nu-merical method that can solve the complex configuration and plasma dynamics for evaluating the electric properties of the modern instrument. For the self-consistent antenna analysis, we have developed a particle simulation code named EMSES based on the particle-in-cell technique including a treatment antenna conductive sur-faces. In this paper, we mainly focus on electrostatic (ES) features and photoelectron distri-bution in the vicinity of MEFISTO. Our simulation model includes (1) a photoelectron guard electrode, (2) a bias current provided from the spacecraft body to the sensing element, (3) a floating potential treatment for the spacecraft body, and (4) photoelectron emission from sunlit surfaces of the conductive bodies. Of these, the photoelectron guard electrode is a key technol-ogy for producing an optimal condition of plasma environment around MEFISTO. Specifically, we introduced a pre-amplifier housing called puck located between the conductive boom and the sensor wire. The photoelectron guard is then simulated by forcibly fixing the potential difference between the puck surface and the spacecraft body. For the modeling, we use the Capacity Matrix technique in order to assure the conservation condition of total charge owned by the

  11. Particle-in-cell simulations of the relaxation of electron beams in inhomogeneous solar wind plasmas

    NASA Astrophysics Data System (ADS)

    Thurgood, Jonathan O.; Tsiklauri, David

    2016-12-01

    Previous theoretical considerations of electron beam relaxation in inhomogeneous plasmas have indicated that the effects of the irregular solar wind may account for the poor agreement of homogeneous modelling with the observations. Quasi-linear theory and Hamiltonian models based on Zakharov's equations have indicated that when the level of density fluctuations is above a given threshold, density irregularities act to de-resonate the beam-plasma interaction, restricting Langmuir wave growth on the expense of beam energy. This work presents the first fully kinetic particle-in-cell (PIC) simulations of beam relaxation under the influence of density irregularities. We aim to independently determine the influence of background inhomogeneity on the beam-plasma system, and to test theoretical predictions and alternative models using a fully kinetic treatment. We carry out one-dimensional (1-D) PIC simulations of a bump-on-tail unstable electron beam in the presence of increasing levels of background inhomogeneity using the fully electromagnetic, relativistic EPOCH PIC code. We find that in the case of homogeneous background plasma density, Langmuir wave packets are generated at the resonant condition and then quasi-linear relaxation leads to a dynamic increase of wavenumbers generated. No electron acceleration is seen - unlike in the inhomogeneous experiments, all of which produce high-energy electrons. For the inhomogeneous experiments we also observe the generation of backwards-propagating Langmuir waves, which is shown directly to be due to the refraction of the packets off the density gradients. In the case of higher-amplitude density fluctuations, similar features to the weaker cases are found, but also packets can also deviate from the expected dispersion curve in -space due to nonlinearity. Our fully kinetic PIC simulations broadly confirm the findings of quasi-linear theory and the Hamiltonian model based on Zakharov's equations. Strong density fluctuations

  12. Particle-in-Cell simulation of energetic particles driven instabilities

    NASA Astrophysics Data System (ADS)

    Chen, Yang; Parker, Scott E.; Lang, Jianying; Fu, Guoyong

    2009-11-01

    We present simulations of the evolution of energetic particles driven modes with the gyrokinetic turbulence code GEMfootnotetextY. Chen and S. E. Parker, J. Comp. Phys. 220, 839 (2007), except that kinetic electrons are replaced by a mass-less fluid model. PIC simulations of energetic particles use either the conventional full-f method or the δ method. The latter is adequate for low-amplitude fluctuation amplitudes. The collisional δ -methodfootnotetextY. Chen and R. White, Phys. Plasmas 4, 3591 (1997) is used to systematically account for collisions and particle source and sink. Steady state saturation amplitudes are benchmarked with predictions of analytic theory. We also employ full-f simulationsfootnotetextY. Todo et. al, Phys. Plasmas 10, 2888 (2003) to study bursty events in which the instabilities reach large amplitudes and cause macroscopic redistribution or loss of the particles. With full-f it is easy to retain all the nonlinear effects and treat accurately discontinuities in the distribution function at phase-space boundaries. Whereas the energetic particle current is neglegible in the Ampere's law in δ simulations, it is important in full-f simulations. Thermal ion kinetic effects are observed to be important.

  13. Verification of high performance two-dimensional particle-in-cell simulations of low-temperature plasmas

    NASA Astrophysics Data System (ADS)

    Leggate, Huw; Turner, Miles

    2016-09-01

    We discuss a two-dimensional implementation of the particle-in-cell algorithm with Monte Carlo collisions. This implementation is designed for multiprocessor environments in which each processor is assumed to offer vector capabilities and multiple execution threads. An appropriate implementation therefore combines OpenMP to exploit multithreading with MPI to coupled computing nodes. This approach promises to achieve accelerations of a least a factor of several hundred, relative to to a simple serial implementation. However, the complexity involved also offers many opportunities for error, and makes correctness demonstrations especially desirable. In this presentation we discuss the characteristics of this parallel implementation, and we describe a suite of verification tests that collectively create a strong presumption that the code is correct. Work supported by the EUROfusion consortium.

  14. A variational multi-symplectic particle-in-cell algorithm with smoothing functions for the Vlasov-Maxwell system

    SciTech Connect

    Xiao, Jianyuan; Liu, Jian; Qin, Hong; Yu, Zhi

    2013-10-15

    Smoothing functions are commonly used to reduce numerical noise arising from coarse sampling of particles in particle-in-cell (PIC) plasma simulations. When applying smoothing functions to symplectic algorithms, the conservation of symplectic structure should be guaranteed to preserve good conservation properties. In this paper, we show how to construct a variational multi-symplectic PIC algorithm with smoothing functions for the Vlasov-Maxwell system. The conservation of the multi-symplectic structure and the reduction of numerical noise make this algorithm specifically suitable for simulating long-term dynamics of plasmas, such as those in the steady-state operation or long-pulse discharge of a super-conducting tokamak. The algorithm has been implemented in a 6D large scale PIC code. Numerical examples are given to demonstrate the good conservation properties of the multi-symplectic algorithm and the reduction of the noise due to the application of smoothing function.

  15. A particle-in-cell method for the simulation of plasmas based on an unconditionally stable field solver

    DOE PAGES

    Wolf, Eric M.; Causley, Matthew; Christlieb, Andrew; ...

    2016-08-09

    Here, we propose a new particle-in-cell (PIC) method for the simulation of plasmas based on a recently developed, unconditionally stable solver for the wave equation. This method is not subject to a CFL restriction, limiting the ratio of the time step size to the spatial step size, typical of explicit methods, while maintaining computational cost and code complexity comparable to such explicit schemes. We describe the implementation in one and two dimensions for both electrostatic and electromagnetic cases, and present the results of several standard test problems, showing good agreement with theory with time step sizes much larger than allowedmore » by typical CFL restrictions.« less

  16. BEAMS3D Neutral Beam Injection Model

    NASA Astrophysics Data System (ADS)

    McMillan, Matthew; Lazerson, Samuel A.

    2014-09-01

    With the advent of applied 3D fields in Tokamaks and modern high performance stellarators, a need has arisen to address non-axisymmetric effects on neutral beam heating and fueling. We report on the development of a fully 3D neutral beam injection (NBI) model, BEAMS3D, which addresses this need by coupling 3D equilibria to a guiding center code capable of modeling neutral and charged particle trajectories across the separatrix and into the plasma core. Ionization, neutralization, charge-exchange, viscous slowing down, and pitch angle scattering are modeled with the ADAS atomic physics database. Elementary benchmark calculations are presented to verify the collisionless particle orbits, NBI model, frictional drag, and pitch angle scattering effects. A calculation of neutral beam heating in the NCSX device is performed, highlighting the capability of the code to handle 3D magnetic fields. Notice: this manuscript has been authored by Princeton University under Contract Number DE-AC02-09CH11466 with the US Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes.

  17. Intraoral 3D scanner

    NASA Astrophysics Data System (ADS)

    Kühmstedt, Peter; Bräuer-Burchardt, Christian; Munkelt, Christoph; Heinze, Matthias; Palme, Martin; Schmidt, Ingo; Hintersehr, Josef; Notni, Gunther

    2007-09-01

    Here a new set-up of a 3D-scanning system for CAD/CAM in dental industry is proposed. The system is designed for direct scanning of the dental preparations within the mouth. The measuring process is based on phase correlation technique in combination with fast fringe projection in a stereo arrangement. The novelty in the approach is characterized by the following features: A phase correlation between the phase values of the images of two cameras is used for the co-ordinate calculation. This works contrary to the usage of only phase values (phasogrammetry) or classical triangulation (phase values and camera image co-ordinate values) for the determination of the co-ordinates. The main advantage of the method is that the absolute value of the phase at each point does not directly determine the coordinate. Thus errors in the determination of the co-ordinates are prevented. Furthermore, using the epipolar geometry of the stereo-like arrangement the phase unwrapping problem of fringe analysis can be solved. The endoscope like measurement system contains one projection and two camera channels for illumination and observation of the object, respectively. The new system has a measurement field of nearly 25mm × 15mm. The user can measure two or three teeth at one time. So the system can by used for scanning of single tooth up to bridges preparations. In the paper the first realization of the intraoral scanner is described.

  18. 'Diamond' in 3-D

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This 3-D, microscopic imager mosaic of a target area on a rock called 'Diamond Jenness' was taken after NASA's Mars Exploration Rover Opportunity ground into the surface with its rock abrasion tool for a second time.

    Opportunity has bored nearly a dozen holes into the inner walls of 'Endurance Crater.' On sols 177 and 178 (July 23 and July 24, 2004), the rover worked double-duty on Diamond Jenness. Surface debris and the bumpy shape of the rock resulted in a shallow and irregular hole, only about 2 millimeters (0.08 inch) deep. The final depth was not enough to remove all the bumps and leave a neat hole with a smooth floor. This extremely shallow depression was then examined by the rover's alpha particle X-ray spectrometer.

    On Sol 178, Opportunity's 'robotic rodent' dined on Diamond Jenness once again, grinding almost an additional 5 millimeters (about 0.2 inch). The rover then applied its Moessbauer spectrometer to the deepened hole. This double dose of Diamond Jenness enabled the science team to examine the rock at varying layers. Results from those grindings are currently being analyzed.

    The image mosaic is about 6 centimeters (2.4 inches) across.

  19. Prominent rocks - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Many prominent rocks near the Sagan Memorial Station are featured in this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. Wedge is at lower left; Shark, Half-Dome, and Pumpkin are at center. Flat Top, about four inches high, is at lower right. The horizon in the distance is one to two kilometers away.

    Mars Pathfinder is the second in NASA's Discovery program of low-cost spacecraft with highly focused science goals. The Jet Propulsion Laboratory, Pasadena, CA, developed and manages the Mars Pathfinder mission for NASA's Office of Space Science, Washington, D.C. JPL is an operating division of the California Institute of Technology (Caltech). The Imager for Mars Pathfinder (IMP) was developed by the University of Arizona Lunar and Planetary Laboratory under contract to JPL. Peter Smith is the Principal Investigator.

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  20. CFL3D User's Manual (Version 5.0)

    NASA Technical Reports Server (NTRS)

    Krist, Sherrie L.; Biedron, Robert T.; Rumsey, Christopher L.

    1998-01-01

    This document is the User's Manual for the CFL3D computer code, a thin-layer Reynolds-averaged Navier-Stokes flow solver for structured multiple-zone grids. Descriptions of the code's input parameters, non-dimensionalizations, file formats, boundary conditions, and equations are included. Sample 2-D and 3-D test cases are also described, and many helpful hints for using the code are provided.

  1. Study of plasma meniscus and beam halo in negative ion sources using three dimension in real space and three dimension in velocity space particle in cell model

    SciTech Connect

    Nishioka, S. Goto, I.; Hatayama, A.; Miyamoto, K.; Okuda, S.; Fukano, A.

    2014-02-15

    Our previous study by two dimension in real space and three dimension in velocity space-particle in cell model shows that the curvature of the plasma meniscus causes the beam halo in the negative ion sources. The negative ions extracted from the periphery of the meniscus are over-focused in the extractor due to the electrostatic lens effect, and consequently become the beam halo. The purpose of this study is to verify this mechanism with the full 3D model. It is shown that the above mechanism is essentially unchanged even in the 3D model, while the fraction of the beam halo is significantly reduced to 6%. This value reasonably agrees with the experimental result.

  2. Delft3D turbine turbulence module

    SciTech Connect

    Chartrand, Chris; Jagers, Bert

    2016-04-18

    The DOE has funded Sandia National Labs (SNL) to develop an open-source modeling tool to guide the design and layout of marine hydrokinetic (MHK) arrays to maximize power production while minimizing environmental effects. This modeling framework simulates flows through and around a MHK arrays while quantifying environmental responses. As an augmented version of the Dutch company, Deltares’s, environmental hydrodynamics code, Delft3D, SNL-Delft3D includes a new module that simulates energy conversion (momentum withdrawal) by MHK devices with commensurate changes in the turbulent kinetic energy and its dissipation rate.

  3. Superplastic forming using NIKE3D

    SciTech Connect

    Puso, M.

    1996-12-04

    The superplastic forming process requires careful control of strain rates in order to avoid strain localizations. A load scheduler was developed and implemented into the nonlinear finite element code NIKE3D to provide strain rate control during forming simulation and process schedule output. Often the sheets being formed in SPF are very thin such that less expensive membrane elements can be used as opposed to shell elements. A large strain membrane element was implemented into NIKE3D to assist in SPF process modeling.

  4. Development and Testing of EFIT 3D Equilibrium Reconstruction Capability

    NASA Astrophysics Data System (ADS)

    Lao, L. L.; Ferraro, N. M.; Strait, E. J.; Turnbull, A. D.; King, J. D.

    2014-10-01

    Recent development and testing of EFIT capability to reconstruct tokamak 3D perturbed equilibrium are described. The 3D extension is based on an expansion of the MHD equations to account for the 3D effects. EFIT uses the cylindrical coordinate system and can include magnetic island and stochastic effects. Several linearization schemes are being explored to improve the EFIT 3D perturbed solutions. Algorithms are also being developed to allow EFIT to reconstruct 3D perturbed equilibria directly making use of plasma response to 3D perturbations from the MARS or M3D-C1 MHD codes. Other efforts include testing of the new EFIT 3D capability using simulated magnetic data based on response calculations from MARS and M3D-C1, and performing detailed benchmarking calculations against other 3D codes such as VMEC/V3FIT. Reconstruction examples using EFIT and the new DIII-D 3D magnetic measurements to reconstruct 3D perturbed experimental equilibria using well-diagnosed discharges from DIII-D error field, RWM, and RMP experiments will be presented. Work supported by the US DOE under DE-FC02-04ER54698 and DE-FG02-95ER54309.

  5. Monte Carlo approach to calculate ionization dynamics of hot solid-density plasmas within particle-in-cell simulations.

    PubMed

    Wu, D; He, X T; Yu, W; Fritzsche, S

    2017-02-01

    A physical model based on a Monte Carlo approach is proposed to calculate the ionization dynamics of hot-solid-density plasmas within particle-in-cell (PIC) simulations, and where the impact (collision) ionization (CI), electron-ion recombination (RE), and ionization potential depression (IPD) by surrounding plasmas are taken into consideration self-consistently. When compared with other models, which are applied in the literature for plasmas near thermal equilibrium, the temporal relaxation of ionization dynamics can also be simulated by the proposed model. Besides, this model is general and can be applied for both single elements and alloys with quite different compositions. The proposed model is implemented into a PIC code, with (final) ionization equilibriums sustained by competitions between CI and its inverse process (i.e., RE). Comparisons between the full model and model without IPD or RE are performed. Our results indicate that for bulk aluminium at temperature of 1 to 1000 eV, (i) the averaged ionization degree increases by including IPD; while (ii) the averaged ionization degree is significantly over estimated when the RE is neglected. A direct comparison from the PIC code is made with the existing models for the dependence of averaged ionization degree on thermal equilibrium temperatures and shows good agreements with that generated from Saha-Boltzmann model and/or FLYCHK code.

  6. Monte Carlo approach to calculate ionization dynamics of hot solid-density plasmas within particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Wu, D.; He, X. T.; Yu, W.; Fritzsche, S.

    2017-02-01

    A physical model based on a Monte Carlo approach is proposed to calculate the ionization dynamics of hot-solid-density plasmas within particle-in-cell (PIC) simulations, and where the impact (collision) ionization (CI), electron-ion recombination (RE), and ionization potential depression (IPD) by surrounding plasmas are taken into consideration self-consistently. When compared with other models, which are applied in the literature for plasmas near thermal equilibrium, the temporal relaxation of ionization dynamics can also be simulated by the proposed model. Besides, this model is general and can be applied for both single elements and alloys with quite different compositions. The proposed model is implemented into a PIC code, with (final) ionization equilibriums sustained by competitions between CI and its inverse process (i.e., RE). Comparisons between the full model and model without IPD or RE are performed. Our results indicate that for bulk aluminium at temperature of 1 to 1000 eV, (i) the averaged ionization degree increases by including IPD; while (ii) the averaged ionization degree is significantly over estimated when the RE is neglected. A direct comparison from the PIC code is made with the existing models for the dependence of averaged ionization degree on thermal equilibrium temperatures and shows good agreements with that generated from Saha-Boltzmann model and/or FLYCHK code.

  7. 3D unstructured mesh discontinuous finite element hydro

    SciTech Connect

    Prasad, M.K.; Kershaw, D.S.; Shaw, M.J.

    1995-07-01

    The authors present detailed features of the ICF3D hydrodynamics code used for inertial fusion simulations. This code is intended to be a state-of-the-art upgrade of the well-known fluid code, LASNEX. ICF3D employs discontinuous finite elements on a discrete unstructured mesh consisting of a variety of 3D polyhedra including tetrahedra, prisms, and hexahedra. The authors discussed details of how the ROE-averaged second-order convection was applied on the discrete elements, and how the C++ coding interface has helped to simplify implementing the many physics and numerics modules within the code package. The author emphasized the virtues of object-oriented design in large scale projects such as ICF3D.

  8. Recent EFIT Developments and 3D Extension

    NASA Astrophysics Data System (ADS)

    Lao, L. L.; Chu, M. S.; St. John, H. E.; Strait, E. J.; Montgomery, A. L.; Perkins, F. W.

    2006-10-01

    Recent developments of the equilibrium reconstruction code EFIT and its 3D extension to model toroidally asymmetric effects due to error and externally applied perturbation magnetic fields are presented. These include a new more complete uncertainty matrix for magnetic diagnostics based on detailed knowledge about their fabrication, installation, calibration, and operation. A new algorithm to efficiently compute high bootstrap-fraction equilibria that explicitly separates out the Pfirsch-Schluter and bootstrap contributions to the poloidal current stream function is also being developed. Other on-going and planned developments include a new computational structure based on Fortran 90/95 with a unified interface that can conveniently accommodate different tokamak devices and grid sizes, as well as a computational link that allows easy integration with transport and stability physics modules for integrated modeling. EFIT reconstruction capability is also being extended to 3D based on perturbation solutions to the 3D Grad-Shafranov equilibrium equation.

  9. 3D differential phase contrast microscopy

    NASA Astrophysics Data System (ADS)

    Chen, Michael; Tian, Lei; Waller, Laura

    2016-03-01

    We demonstrate three-dimensional (3D) optical phase and amplitude reconstruction based on coded source illumination using a programmable LED array. Multiple stacks of images along the optical axis are computed from recorded intensities captured by multiple images under off-axis illumination. Based on the first Born approximation, a linear differential phase contrast (DPC) model is built between 3D complex index of refraction and the intensity stacks. Therefore, 3D volume reconstruction can be achieved via a fast inversion method, without the intermediate 2D phase retrieval step. Our system employs spatially partially coherent illumination, so the transverse resolution achieves twice the NA of coherent systems, while axial resolution is also improved 2× as compared to holographic imaging.

  10. 3-D Mesh Generation Nonlinear Systems

    SciTech Connect

    Christon, M. A.; Dovey, D.; Stillman, D. W.; Hallquist, J. O.; Rainsberger, R. B

    1994-04-07

    INGRID is a general-purpose, three-dimensional mesh generator developed for use with finite element, nonlinear, structural dynamics codes. INGRID generates the large and complex input data files for DYNA3D, NIKE3D, FACET, and TOPAZ3D. One of the greatest advantages of INGRID is that virtually any shape can be described without resorting to wedge elements, tetrahedrons, triangular elements or highly distorted quadrilateral or hexahedral elements. Other capabilities available are in the areas of geometry and graphics. Exact surface equations and surface intersections considerably improve the ability to deal with accurate models, and a hidden line graphics algorithm is included which is efficient on the most complicated meshes. The primary new capability is associated with the boundary conditions, loads, and material properties required by nonlinear mechanics programs. Commands have been designed for each case to minimize user effort. This is particularly important since special processing is almost always required for each load or boundary condition.

  11. Scoops3D: software to analyze 3D slope stability throughout a digital landscape

    USGS Publications Warehouse

    Reid, Mark E.; Christian, Sarah B.; Brien, Dianne L.; Henderson, Scott T.

    2015-01-01

    install the compiled Scoops3D program, the GUI (Scoops3D-i), and associated documentation. Several Scoops3D examples, including all input and output files, are available as well. The source code is written in the Fortran 90 language and can be compiled to run on any computer operating system with an appropriate compiler.

  12. Planetary Torque in 3D Isentropic Disks

    NASA Astrophysics Data System (ADS)

    Fung, Jeffrey; Masset, Frédéric; Lega, Elena; Velasco, David

    2017-03-01

    Planetary migration is inherently a three-dimensional (3D) problem, because Earth-size planetary cores are deeply embedded in protoplanetary disks. Simulations of these 3D disks remain challenging due to the steep resolution requirements. Using two different hydrodynamics codes, FARGO3D and PEnGUIn, we simulate disk–planet interaction for a one to five Earth-mass planet embedded in an isentropic disk. We measure the torque on the planet and ensure that the measurements are converged both in resolution and between the two codes. We find that the torque is independent of the smoothing length of the planet’s potential (r s), and that it has a weak dependence on the adiabatic index of the gaseous disk (γ). The torque values correspond to an inward migration rate qualitatively similar to previous linear calculations. We perform additional simulations with explicit radiative transfer using FARGOCA, and again find agreement between 3D simulations and existing torque formulae. We also present the flow pattern around the planets that show active flow is present within the planet’s Hill sphere, and meridional vortices are shed downstream. The vertical flow speed near the planet is faster for a smaller r s or γ, up to supersonic speeds for the smallest r s and γ in our study.

  13. Self-consistent particle-in-cell simulations of fundamental and harmonic plasma radio emission mechanisms

    NASA Astrophysics Data System (ADS)

    Thurgood, J. O.; Tsiklauri, D.

    2015-12-01

    Aims: The simulation of three-wave interaction based plasma emission, thought to be the underlying mechanism for Type III solar radio bursts, is a challenging task requiring fully-kinetic, multi-dimensional models. This paper aims to resolve a contradiction in past attempts, whereby some studies indicate that no such processes occur. Methods: We self-consistently simulate three-wave based plasma emission through all stages by using 2D, fully kinetic, electromagnetic particle-in-cell simulations of relaxing electron beams using the EPOCH2D code. Results: Here we present the results of two simulations; Run 1 (nb/n0 = 0.0057, vb/ Δvb = vb/Ve = 16) and Run 2 (nb/n0 = 0.05, vb/ Δvb = vb/Ve = 8), which we find to permit and prohibit plasma emission respectively. We show that the possibility of plasma emission is contingent upon the frequency of the initial electrostatic waves generated by the bump-in-tail instability, and that these waves may be prohibited from participating in the necessary three-wave interactions due to frequency conservation requirements. In resolving this apparent contradiction through a comprehensive analysis, in this paper we present the first self-consistent demonstration of fundamental and harmonic plasma emission from a single-beam system via fully kinetic numerical simulation. We caution against simulating astrophysical radio bursts using unrealistically dense beams (a common approach which reduces run time), as the resulting non-Langmuir characteristics of the initial wave modes significantly suppresses emission. Comparison of our results also indicates that, contrary to the suggestions of previous authors, an alternative plasma emission mechanism based on two counter-propagating beams is unnecessary in an astrophysical context. Finally, we also consider the action of the Weibel instability which generates an electromagnetic beam mode. As this provides a stronger contribution to electromagnetic energy than the emission, we stress that

  14. HPF Implementation of ARC3D

    NASA Technical Reports Server (NTRS)

    Frumkin, Michael; Yan, Jerry

    1999-01-01

    We present an HPF (High Performance Fortran) implementation of ARC3D code along with the profiling and performance data on SGI Origin 2000. Advantages and limitations of HPF as a parallel programming language for CFD applications are discussed. For achieving good performance results we used the data distributions optimized for implementation of implicit and explicit operators of the solver and boundary conditions. We compare the results with MPI and directive based implementations.

  15. Overview of WARP, a particle code for Heavy Ion Fusion

    SciTech Connect

    Friedman, A.; Grote, D.P.; Callahan, D.A.; Langdon, A.B.; Haber, I.

    1993-02-22

    The beams in a Heavy Ion beam driven inertial Fusion (HIF) accelerator must be focused onto small spots at the fusion target, and so preservation of beam quality is crucial. The nonlinear self-fields of these space-charge-dominated beams can lead to emittance growth; thus a self-consistent field description is necessary. We have developed a multi-dimensional discrete-particle simulation code, WARP, and are using it to study the behavior of HIF beams. The code`s 3d package combines features of an accelerator code and a particle-in-cell plasma simulation, and can efficiently track beams through many lattice elements and around bends. We have used the code to understand the physics of aggressive drift-compression in the MBE-4 experiment at Lawrence Berkeley Laboratory (LBL). We have applied it to LBL`s planned ILSE experiments, to various ``recirculator`` configurations, and to the study of equilibria and equilibration processes. Applications of the 3d package to ESQ injectors, and of the r, z package to longitudinal stability in driver beams, are discussed in related papers.

  16. 3D Equilibrium Reconstructions in DIII-D

    NASA Astrophysics Data System (ADS)

    Lao, L. L.; Ferraro, N. W.; Strait, E. J.; Turnbull, A. D.; King, J. D.; Hirshman, H. P.; Lazarus, E. A.; Sontag, A. C.; Hanson, J.; Trevisan, G.

    2013-10-01

    Accurate and efficient 3D equilibrium reconstruction is needed in tokamaks for study of 3D magnetic field effects on experimentally reconstructed equilibrium and for analysis of MHD stability experiments with externally imposed magnetic perturbations. A large number of new magnetic probes have been recently installed in DIII-D to improve 3D equilibrium measurements and to facilitate 3D reconstructions. The V3FIT code has been in use in DIII-D to support 3D reconstruction and the new magnetic diagnostic design. V3FIT is based on the 3D equilibrium code VMEC that assumes nested magnetic surfaces. V3FIT uses a pseudo-Newton least-square algorithm to search for the solution vector. In parallel, the EFIT equilibrium reconstruction code is being extended to allow for 3D effects using a perturbation approach based on an expansion of the MHD equations. EFIT uses the cylindrical coordinate system and can include the magnetic island and stochastic effects. Algorithms are being developed to allow EFIT to reconstruct 3D perturbed equilibria directly making use of plasma response to 3D perturbations from the GATO, MARS-F, or M3D-C1 MHD codes. DIII-D 3D reconstruction examples using EFIT and V3FIT and the new 3D magnetic data will be presented. Work supported in part by US DOE under DE-FC02-04ER54698, DE-FG02-95ER54309 and DE-AC05-06OR23100.

  17. Superplot3d: an open source GUI tool for 3d trajectory visualisation and elementary processing.

    PubMed

    Whitehorn, Luke J; Hawkes, Frances M; Dublon, Ian An

    2013-09-30

    When acquiring simple three-dimensional (3d) trajectory data it is common to accumulate large coordinate data sets. In order to examine integrity and consistency of object tracking, it is often necessary to rapidly visualise these data. Ordinarily, to achieve this the user must either execute 3d plotting functions in a numerical computing environment or manually inspect data in two dimensions, plotting each individual axis.Superplot3d is an open source MATLAB script which takes tab delineated Cartesian data points in the form x, y, z and time and generates an instant visualization of the object's trajectory in free-rotational three dimensions. Whole trajectories may be instantly presented, allowing for rapid inspection. Executable from the MATLAB command line (or deployable as a compiled standalone application) superplot3d also provides simple GUI controls to obtain rudimentary trajectory information, allow specific visualization of trajectory sections and perform elementary processing.Superplot3d thus provides a framework for non-programmers and programmers alike, to recreate recently acquired 3d object trajectories in rotatable 3d space. It is intended, via the use of a preference driven menu to be flexible and work with output from multiple tracking software systems. Source code and accompanying GUIDE .fig files are provided for deployment and further development.

  18. 3D Spectroscopy in Astronomy

    NASA Astrophysics Data System (ADS)

    Mediavilla, Evencio; Arribas, Santiago; Roth, Martin; Cepa-Nogué, Jordi; Sánchez, Francisco

    2011-09-01

    Preface; Acknowledgements; 1. Introductory review and technical approaches Martin M. Roth; 2. Observational procedures and data reduction James E. H. Turner; 3. 3D Spectroscopy instrumentation M. A. Bershady; 4. Analysis of 3D data Pierre Ferruit; 5. Science motivation for IFS and galactic studies F. Eisenhauer; 6. Extragalactic studies and future IFS science Luis Colina; 7. Tutorials: how to handle 3D spectroscopy data Sebastian F. Sánchez, Begona García-Lorenzo and Arlette Pécontal-Rousset.

  19. 3D Elevation Program—Virtual USA in 3D

    USGS Publications Warehouse

    Lukas, Vicki; Stoker, J.M.

    2016-04-14

    The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) uses a laser system called ‘lidar’ (light detection and ranging) to create a virtual reality map of the Nation that is very accurate. 3D maps have many uses with new uses being discovered all the time.  

  20. Modeling a thermionic energy converter using finite-difference time-domain particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Lo, F. S.; Lu, P. S.; Ragan-Kelley, B.; Minnich, A. J.; Lee, T. H.; Lin, M. C.; Verboncoeur, J. P.

    2014-02-01

    A thermionic energy converter (TEC) is a static device that converts heat directly into electricity by boiling electrons off a hot emitter surface across a small inter-electrode gap to a cooler collector surface. The main challenge in TECs is overcoming the space charge limit, which limits the current transmitted across a gap of a given voltage and width. We have verified the feasibility of studying and developing a TEC using a bounded finite-difference time-domain particle-in-cell plasma simulation code, OOPD1, developed by Plasma Theory and Simulation Group, formerly at UC Berkeley and now at Michigan State University. In this preliminary work, a TEC has been modeled kinetically using OOPD1, and the accuracy has been verified by comparing with an analytically solvable case, giving good agreement. With further improvement of the code, one will be able to quickly and cheaply analyze space charge effects, and seek designs that mitigate the space charge effect, allowing TECs to become more efficient and cost-effective.

  1. CFL3D: Its History and Some Recent Applications

    NASA Technical Reports Server (NTRS)

    Rumsey, C. L.; Biedron, R. T.; Thomas, J. L.

    1997-01-01

    The history of the Computational Fluids Laboratory -3D (CFL3D) Navier-Stokes computer code is discussed and a comprehensive reference list is given. Three recent advanced applications are presented (1) Wing with partial-spanflap, (2) F/A-18 with forebody control strake, and (3) Noise predictions for an advanced ducted propeller turbomachinery flow.

  2. Visualization of 3D Geological Data using COLLADA and KML

    NASA Astrophysics Data System (ADS)

    Choi, Yosoon; Um, Jeong-Gi; Park, Myong-Ho

    2013-04-01

    This study presents a method to visualize 3D geological data using COLLAborative Design Activity(COLLADA, an open standard XML schema for establishing interactive 3D applications) and Keyhole Markup Language(KML, the XML-based scripting language of Google Earth).We used COLLADA files to represent different 3D geological data such as borehole, fence section, surface-based 3D volume and 3D grid by triangle meshes(a set of triangles connected by their common edges or corners). The COLLADA files were imported into the 3D render window of Google Earth using KML codes. An application to the Grosmont formation in Alberta, Canada showed that the combination of COLLADA and KML enables Google Earth to visualize 3D geological structures and properties.

  3. MAP3D: a media processor approach for high-end 3D graphics

    NASA Astrophysics Data System (ADS)

    Darsa, Lucia; Stadnicki, Steven; Basoglu, Chris

    1999-12-01

    Equator Technologies, Inc. has used a software-first approach to produce several programmable and advanced VLIW processor architectures that have the flexibility to run both traditional systems tasks and an array of media-rich applications. For example, Equator's MAP1000A is the world's fastest single-chip programmable signal and image processor targeted for digital consumer and office automation markets. The Equator MAP3D is a proposal for the architecture of the next generation of the Equator MAP family. The MAP3D is designed to achieve high-end 3D performance and a variety of customizable special effects by combining special graphics features with high performance floating-point and media processor architecture. As a programmable media processor, it offers the advantages of a completely configurable 3D pipeline--allowing developers to experiment with different algorithms and to tailor their pipeline to achieve the highest performance for a particular application. With the support of Equator's advanced C compiler and toolkit, MAP3D programs can be written in a high-level language. This allows the compiler to successfully find and exploit any parallelism in a programmer's code, thus decreasing the time to market of a given applications. The ability to run an operating system makes it possible to run concurrent applications in the MAP3D chip, such as video decoding while executing the 3D pipelines, so that integration of applications is easily achieved--using real-time decoded imagery for texturing 3D objects, for instance. This novel architecture enables an affordable, integrated solution for high performance 3D graphics.

  4. 3D World Building System

    ScienceCinema

    None

    2016-07-12

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  5. 3D Buckligami: Digital Matter

    NASA Astrophysics Data System (ADS)

    van Hecke, Martin; de Reus, Koen; Florijn, Bastiaan; Coulais, Corentin

    2014-03-01

    We present a class of elastic structures which exhibit collective buckling in 3D, and create these by a 3D printing/moulding technique. Our structures consist of cubic lattice of anisotropic unit cells, and we show that their mechanical properties are programmable via the orientation of these unit cells.

  6. 3D World Building System

    SciTech Connect

    2013-10-30

    This video provides an overview of the Sandia National Laboratories developed 3-D World Model Building capability that provides users with an immersive, texture rich 3-D model of their environment in minutes using a laptop and color and depth camera.

  7. Market study: 3-D eyetracker

    NASA Technical Reports Server (NTRS)

    1977-01-01

    A market study of a proposed version of a 3-D eyetracker for initial use at NASA's Ames Research Center was made. The commercialization potential of a simplified, less expensive 3-D eyetracker was ascertained. Primary focus on present and potential users of eyetrackers, as well as present and potential manufacturers has provided an effective means of analyzing the prospects for commercialization.

  8. ICER-3D Hyperspectral Image Compression Software

    NASA Technical Reports Server (NTRS)

    Xie, Hua; Kiely, Aaron; Klimesh, matthew; Aranki, Nazeeh

    2010-01-01

    Software has been developed to implement the ICER-3D algorithm. ICER-3D effects progressive, three-dimensional (3D), wavelet-based compression of hyperspectral images. If a compressed data stream is truncated, the progressive nature of the algorithm enables reconstruction of hyperspectral data at fidelity commensurate with the given data volume. The ICER-3D software is capable of providing either lossless or lossy compression, and incorporates an error-containment scheme to limit the effects of data loss during transmission. The compression algorithm, which was derived from the ICER image compression algorithm, includes wavelet-transform, context-modeling, and entropy coding subalgorithms. The 3D wavelet decomposition structure used by ICER-3D exploits correlations in all three dimensions of sets of hyperspectral image data, while facilitating elimination of spectral ringing artifacts, using a technique summarized in "Improving 3D Wavelet-Based Compression of Spectral Images" (NPO-41381), NASA Tech Briefs, Vol. 33, No. 3 (March 2009), page 7a. Correlation is further exploited by a context-modeling subalgorithm, which exploits spectral dependencies in the wavelet-transformed hyperspectral data, using an algorithm that is summarized in "Context Modeler for Wavelet Compression of Hyperspectral Images" (NPO-43239), which follows this article. An important feature of ICER-3D is a scheme for limiting the adverse effects of loss of data during transmission. In this scheme, as in the similar scheme used by ICER, the spatial-frequency domain is partitioned into rectangular error-containment regions. In ICER-3D, the partitions extend through all the wavelength bands. The data in each partition are compressed independently of those in the other partitions, so that loss or corruption of data from any partition does not affect the other partitions. Furthermore, because compression is progressive within each partition, when data are lost, any data from that partition received

  9. Euro3D Science Conference

    NASA Astrophysics Data System (ADS)

    Walsh, J. R.

    2004-02-01

    The Euro3D RTN is an EU funded Research Training Network to foster the exploitation of 3D spectroscopy in Europe. 3D spectroscopy is a general term for spectroscopy of an area of the sky and derives its name from its two spatial + one spectral dimensions. There are an increasing number of instruments which use integral field devices to achieve spectroscopy of an area of the sky, either using lens arrays, optical fibres or image slicers, to pack spectra of multiple pixels on the sky (``spaxels'') onto a 2D detector. On account of the large volume of data and the special methods required to reduce and analyse 3D data, there are only a few centres of expertise and these are mostly involved with instrument developments. There is a perceived lack of expertise in 3D spectroscopy spread though the astronomical community and its use in the armoury of the observational astronomer is viewed as being highly specialised. For precisely this reason the Euro3D RTN was proposed to train young researchers in this area and develop user tools to widen the experience with this particular type of data in Europe. The Euro3D RTN is coordinated by Martin M. Roth (Astrophysikalisches Institut Potsdam) and has been running since July 2002. The first Euro3D science conference was held in Cambridge, UK from 22 to 23 May 2003. The main emphasis of the conference was, in keeping with the RTN, to expose the work of the young post-docs who are funded by the RTN. In addition the team members from the eleven European institutes involved in Euro3D also presented instrumental and observational developments. The conference was organized by Andy Bunker and held at the Institute of Astronomy. There were over thirty participants and 26 talks covered the whole range of application of 3D techniques. The science ranged from Galactic planetary nebulae and globular clusters to kinematics of nearby galaxies out to objects at high redshift. Several talks were devoted to reporting recent observations with newly

  10. 3D vision system assessment

    NASA Astrophysics Data System (ADS)

    Pezzaniti, J. Larry; Edmondson, Richard; Vaden, Justin; Hyatt, Bryan; Chenault, David B.; Kingston, David; Geulen, Vanilynmae; Newell, Scott; Pettijohn, Brad

    2009-02-01

    In this paper, we report on the development of a 3D vision system consisting of a flat panel stereoscopic display and auto-converging stereo camera and an assessment of the system's use for robotic driving, manipulation, and surveillance operations. The 3D vision system was integrated onto a Talon Robot and Operator Control Unit (OCU) such that direct comparisons of the performance of a number of test subjects using 2D and 3D vision systems were possible. A number of representative scenarios were developed to determine which tasks benefited most from the added depth perception and to understand when the 3D vision system hindered understanding of the scene. Two tests were conducted at Fort Leonard Wood, MO with noncommissioned officers ranked Staff Sergeant and Sergeant First Class. The scenarios; the test planning, approach and protocols; the data analysis; and the resulting performance assessment of the 3D vision system are reported.

  11. 3D printing in dentistry.

    PubMed

    Dawood, A; Marti Marti, B; Sauret-Jackson, V; Darwood, A

    2015-12-01

    3D printing has been hailed as a disruptive technology which will change manufacturing. Used in aerospace, defence, art and design, 3D printing is becoming a subject of great interest in surgery. The technology has a particular resonance with dentistry, and with advances in 3D imaging and modelling technologies such as cone beam computed tomography and intraoral scanning, and with the relatively long history of the use of CAD CAM technologies in dentistry, it will become of increasing importance. Uses of 3D printing include the production of drill guides for dental implants, the production of physical models for prosthodontics, orthodontics and surgery, the manufacture of dental, craniomaxillofacial and orthopaedic implants, and the fabrication of copings and frameworks for implant and dental restorations. This paper reviews the types of 3D printing technologies available and their various applications in dentistry and in maxillofacial surgery.

  12. PLOT3D user's manual

    NASA Technical Reports Server (NTRS)

    Walatka, Pamela P.; Buning, Pieter G.; Pierce, Larry; Elson, Patricia A.

    1990-01-01

    PLOT3D is a computer graphics program designed to visualize the grids and solutions of computational fluid dynamics. Seventy-four functions are available. Versions are available for many systems. PLOT3D can handle multiple grids with a million or more grid points, and can produce varieties of model renderings, such as wireframe or flat shaded. Output from PLOT3D can be used in animation programs. The first part of this manual is a tutorial that takes the reader, keystroke by keystroke, through a PLOT3D session. The second part of the manual contains reference chapters, including the helpfile, data file formats, advice on changing PLOT3D, and sample command files.

  13. Wavelet-based Poisson solver for use in particle-in-cell simulations.

    PubMed

    Terzić, Balsa; Pogorelov, Ilya V

    2005-06-01

    We report on a successful implementation of a wavelet-based Poisson solver for use in three-dimensional particle-in-cell simulations. Our method harnesses advantages afforded by the wavelet formulation, such as sparsity of operators and data sets, existence of effective preconditioners, and the ability simultaneously to remove numerical noise and additional compression of relevant data sets. We present and discuss preliminary results relating to the application of the new solver to test problems in accelerator physics and astrophysics.

  14. Geometric Integration Of The Vlasov-Maxwell System With A Variational Particle-in-cell Scheme

    SciTech Connect

    J. Squire, H. Qin and W.M. Tang

    2012-03-27

    A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of Discrete Exterior Calculus [1], the field solver, interpolation scheme and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law.

  15. Geometric integration of the Vlasov-Maxwell system with a variational particle-in-cell scheme

    SciTech Connect

    Squire, J.; Tang, W. M.; Qin, H.

    2012-08-15

    A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of discrete exterior calculus [Desbrun et al., e-print arXiv:math/0508341 (2005)], the field solver, interpolation scheme, and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law.

  16. Implementations of mesh refinement schemes for particle-in-cell plasma simulations

    SciTech Connect

    Vay, J.-L.; Colella, P.; Friedman, A.; Grote, D.P.; McCorquodale, P.; Serafini, D.B.

    2003-10-20

    Plasma simulations are often rendered challenging by the disparity of scales in time and in space which must be resolved. When these disparities are in distinctive zones of the simulation region, a method which has proven to be effective in other areas (e.g. fluid dynamics simulations) is the mesh refinement technique. We briefly discuss the challenges posed by coupling this technique with plasma Particle-In-Cell simulations and present two implementations in more detail, with examples.

  17. FLIP: A method for adaptively zoned, particle-in-cell calculations of fluid in two dimensions

    SciTech Connect

    Brackbill, J.U.; Ruppel, H.M.

    1986-08-01

    A method is presented for calculating fluid flow in two dimensions using a full particle-in-cell representation on an adaptively zoned grid. The method has many interesting properties, among them an almost total absence of numerical dissipation and the ability to represent large variations in the data. The method is described using a standard formalism and its properties are illustrated by supersonic flow over a step and the interaction of a shock with a thin foil.

  18. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITHOUT TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  19. PLOT3D/AMES, APOLLO UNIX VERSION USING GMR3D (WITH TURB3D)

    NASA Technical Reports Server (NTRS)

    Buning, P.

    1994-01-01

    PLOT3D is an interactive graphics program designed to help scientists visualize computational fluid dynamics (CFD) grids and solutions. Today, supercomputers and CFD algorithms can provide scientists with simulations of such highly complex phenomena that obtaining an understanding of the simulations has become a major problem. Tools which help the scientist visualize the simulations can be of tremendous aid. PLOT3D/AMES offers more functions and features, and has been adapted for more types of computers than any other CFD graphics program. Version 3.6b+ is supported for five computers and graphic libraries. Using PLOT3D, CFD physicists can view their computational models from any angle, observing the physics of problems and the quality of solutions. As an aid in designing aircraft, for example, PLOT3D's interactive computer graphics can show vortices, temperature, reverse flow, pressure, and dozens of other characteristics of air flow during flight. As critical areas become obvious, they can easily be studied more closely using a finer grid. PLOT3D is part of a computational fluid dynamics software cycle. First, a program such as 3DGRAPE (ARC-12620) helps the scientist generate computational grids to model an object and its surrounding space. Once the grids have been designed and parameters such as the angle of attack, Mach number, and Reynolds number have been specified, a "flow-solver" program such as INS3D (ARC-11794 or COS-10019) solves the system of equations governing fluid flow, usually on a supercomputer. Grids sometimes have as many as two million points, and the "flow-solver" produces a solution file which contains density, x- y- and z-momentum, and stagnation energy for each grid point. With such a solution file and a grid file containing up to 50 grids as input, PLOT3D can calculate and graphically display any one of 74 functions, including shock waves, surface pressure, velocity vectors, and particle traces. PLOT3D's 74 functions are organized into

  20. Recent Progress on the Marylie/Impact Beam Dynamics Code

    SciTech Connect

    Ryne, R.D.; Qiang, J.; Bethel, E.W.; Pogorelov, I.; Shalf, J.; Siegerist, C.; Venturini, M.; Dragt, A.J.; Adelmann, A.; Abell, D.; Amundson, J.; Spentzouris, P.; Neri, F.; Walstrom, P.; Mottershead, C.T.; Samulyak, R.

    2006-12-06

    MARYLIE/IMPACT (ML/I) is a hybrid code that combines the beam optics capabilities of MARYLIE with the parallel Particle-In-Cell capabilities of IMPACT. In addition to combining the capabilities of these codes, ML/I has a number of powerful features, including a choice of Poisson solvers, a fifth-order rf cavity model, multiple reference particles for rf cavities, a library of soft-edge magnet models, representation of magnet systems in terms of coil stacks with possibly overlapping fields, and wakefield effects. The code allows for map production, map analysis, particle tracking, and 3D envelope tracking, all within a single, coherent user environment. ML/I has a front end that can read both MARYLIE input and MAD lattice descriptions. The code can model beams with or without acceleration, and with or without space charge. Developed under a US DOE Scientific Discovery through Advanced Computing (SciDAC) project, ML/I is well suited to large-scale modeling, simulations having been performed with up to 100M macroparticles. The code inherits the powerful fitting and optimizing capabilities of MARYLIE augmented for the new features of ML/I. The combination of soft-edge magnet models, high-order capability, space charge effects, and fitting/optimization capabilities, make ML/I a powerful code for a wide range of beam optics design problems. This paper provides a description of the code and its unique capabilities.

  1. M3D project for simulation studies of plasmas

    SciTech Connect

    Park, W.; Belova, E.V.; Fu, G.Y.; Strauss, H.R.; Sugiyama, L.E.

    1998-12-31

    The M3D (Multi-level 3D) project carries out simulation studies of plasmas of various regimes using multi-levels of physics, geometry, and mesh schemes in one code package. This paper and papers by Strauss, Sugiyama, and Belova in this workshop describe the project, and present examples of current applications. The currently available physics models of the M3D project are MHD, two-fluids, gyrokinetic hot particle/MHD hybrid, and gyrokinetic particle ion/two-fluid hybrid models. The code can be run with both structured and unstructured meshes.

  2. GEN3D Ver. 1.37

    SciTech Connect

    2012-01-04

    GEN3D is a three-dimensional mesh generation program. The three-dimensional mesh is generated by mapping a two-dimensional mesh into threedimensions according to one of four types of transformations: translating, rotating, mapping onto a spherical surface, and mapping onto a cylindrical surface. The generated three-dimensional mesh can then be reoriented by offsetting, reflecting about an axis, and revolving about an axis. GEN3D can be used to mesh geometries that are axisymmetric or planar, but, due to three-dimensional loading or boundary conditions, require a three-dimensional finite element mesh and analysis. More importantly, it can be used to mesh complex three-dimensional geometries composed of several sections when the sections can be defined in terms of transformations of two dimensional geometries. The code GJOIN is then used to join the separate sections into a single body. GEN3D reads and writes twodimensional and threedimensional mesh databases in the GENESIS database format; therefore, it is compatible with the preprocessing, postprocessing, and analysis codes used by the Engineering Analysis Department at Sandia National Laboratories, Albuquerque, NM.

  3. A 3-d modular gripper design tool

    SciTech Connect

    Brown, R.G.; Brost, R.C.

    1997-02-01

    Modular fixturing kits are sets of components used for flexible, rapid construction of fixtures. A modular vise is a parallel-jaw vise, each jaw of which is a modular fixture plate with a regular grid of precisely positioned holes. To fixture a part, one places pins in some of the holes so that when the vise is closed, the part is reliably located and completely constrained. The modular vise concept can be adapted easily to the design of modular parallel-jaw grippers for robots. By attaching a grid-plate to each jaw of a parallel-jaw gripper, one gains the ability to easily construct high-quality grasps for a wide variety of parts from a standard set of hardware. Wallack and Canny developed an algorithm for planning planar grasp configurations for the modular vise. In this paper, the authors expand this work to produce a 3-d fixture/gripper design tool. They describe several analyses they have added to the planar algorithm, including a 3-d grasp quality metric based on force information, 3-d geometric loading analysis, and inter-gripper interference analysis. Finally, the authors describe two applications of their code. One of these is an internal application at Sandia, while the other shows a potential use of the code for designing part of an agile assembly line.

  4. Computational modeling of RNA 3D structures and interactions.

    PubMed

    Dawson, Wayne K; Bujnicki, Janusz M

    2016-04-01

    RNA molecules have key functions in cellular processes beyond being carriers of protein-coding information. These functions are often dependent on the ability to form complex three-dimensional (3D) structures. However, experimental determination of RNA 3D structures is difficult, which has prompted the development of computational methods for structure prediction from sequence. Recent progress in 3D structure modeling of RNA and emerging approaches for predicting RNA interactions with ions, ligands and proteins have been stimulated by successes in protein 3D structure modeling.

  5. The EISCAT_3D Science Case

    NASA Astrophysics Data System (ADS)

    Tjulin, A.; Mann, I.; McCrea, I.; Aikio, A. T.

    2013-05-01

    EISCAT_3D will be a world-leading international research infrastructure using the incoherent scatter technique to study the atmosphere in the Fenno-Scandinavian Arctic and to investigate how the Earth's atmosphere is coupled to space. The EISCAT_3D phased-array multistatic radar system will be operated by EISCAT Scientific Association and thus be an integral part of an organisation that has successfully been running incoherent scatter radars for more than thirty years. The baseline design of the radar system contains a core site with transmitting and receiving capabilities located close to the intersection of the Swedish, Norwegian and Finnish borders and five receiving sites located within 50 to 250 km from the core. The EISCAT_3D project is currently in its Preparatory Phase and can smoothly transit into implementation in 2014, provided sufficient funding. Construction can start 2016 and first operations in 2018. The EISCAT_3D Science Case is prepared as part of the Preparatory Phase. It is regularly updated with annual new releases, and it aims at being a common document for the whole future EISCAT_3D user community. The areas covered by the Science Case are atmospheric physics and global change; space and plasma physics; solar system research; space weather and service applications; and radar techniques, new methods for coding and analysis. Two of the aims for EISCAT_3D are to understand the ways natural variability in the upper atmosphere, imposed by the Sun-Earth system, can influence the middle and lower atmosphere, and to improve the predictivity of atmospheric models by providing higher resolution observations to replace the current parametrised input. Observations by EISCAT_3D will also be used to monitor the direct effects from the Sun on the ionosphere-atmosphere system and those caused by solar wind magnetosphere-ionosphere interaction. In addition, EISCAT_3D will be used for remote sensing the large-scale behaviour of the magnetosphere from its

  6. Unassisted 3D camera calibration

    NASA Astrophysics Data System (ADS)

    Atanassov, Kalin; Ramachandra, Vikas; Nash, James; Goma, Sergio R.

    2012-03-01

    With the rapid growth of 3D technology, 3D image capture has become a critical part of the 3D feature set on mobile phones. 3D image quality is affected by the scene geometry as well as on-the-device processing. An automatic 3D system usually assumes known camera poses accomplished by factory calibration using a special chart. In real life settings, pose parameters estimated by factory calibration can be negatively impacted by movements of the lens barrel due to shaking, focusing, or camera drop. If any of these factors displaces the optical axes of either or both cameras, vertical disparity might exceed the maximum tolerable margin and the 3D user may experience eye strain or headaches. To make 3D capture more practical, one needs to consider unassisted (on arbitrary scenes) calibration. In this paper, we propose an algorithm that relies on detection and matching of keypoints between left and right images. Frames containing erroneous matches, along with frames with insufficiently rich keypoint constellations, are detected and discarded. Roll, pitch yaw , and scale differences between left and right frames are then estimated. The algorithm performance is evaluated in terms of the remaining vertical disparity as compared to the maximum tolerable vertical disparity.

  7. A Fokker-Planck-Landau collision equation solver on two-dimensional velocity grid and its application to particle-in-cell simulation

    SciTech Connect

    Yoon, E. S.; Chang, C. S.

    2014-03-15

    An approximate two-dimensional solver of the nonlinear Fokker-Planck-Landau collision operator has been developed using the assumption that the particle probability distribution function is independent of gyroangle in the limit of strong magnetic field. The isotropic one-dimensional scheme developed for nonlinear Fokker-Planck-Landau equation by Buet and Cordier [J. Comput. Phys. 179, 43 (2002)] and for linear Fokker-Planck-Landau equation by Chang and Cooper [J. Comput. Phys. 6, 1 (1970)] have been modified and extended to two-dimensional nonlinear equation. In addition, a method is suggested to apply the new velocity-grid based collision solver to Lagrangian particle-in-cell simulation by adjusting the weights of marker particles and is applied to a five dimensional particle-in-cell code to calculate the neoclassical ion thermal conductivity in a tokamak plasma. Error verifications show practical aspects of the present scheme for both grid-based and particle-based kinetic codes.

  8. Development of a 3D particle treecode for plasma simulations

    NASA Astrophysics Data System (ADS)

    Ong, Benjamin; Christlieb, Andrew; Krasny, Robert

    2008-11-01

    In this work we present a fully 3-D Boundary Integral Treecode (BIT). We apply the method to several classic problems such as sheath formation and 3D simulations of a Penning trap. In addition, we investigate the ability of the solver to naturally capture Coloumb scattering. A key point in the investigation is to understand the effect of different types of regularizations, and how to appropriately incorporate the regularization in the BIT framework. This work builds on substantial efforts in 1- and 2-D. [1] R. Krasny and K. Lindsay, A particle method and adaptive treecode for vortex sheet motion in 3-D flow, JCP, Vol. 172, No. 2, 879-907 [2] K. Matyash, R. Schneider, R. Sydora, and F. Taccogna, Application of a Grid-Free Kinetic Model to the Collisionless Sheath, Contrib. Plasma Phys, Vol. 48, No. 1-3, 116-120 (2008) [3] K. Cartwright and A. Christlieb, Boundary Integral Corrected Particle in Cell, SIAM Journal on Sci. Comput., submitted [4] A. Christlieb, R. Krasny, B. Ong and J. Qiu, A Step Towards Addressing Temporal Multi-scale Problems in Plasma Physics, in prep.

  9. 3D Scan Systems Integration

    DTIC Science & Technology

    2007-11-02

    AGENCY USE ONLY (Leave Blank) 2. REPORT DATE 5 Feb 98 4. TITLE AND SUBTITLE 3D Scan Systems Integration REPORT TYPE AND DATES COVERED...2-89) Prescribed by ANSI Std. Z39-1 298-102 [ EDO QUALITY W3PECTEDI DLA-ARN Final Report for US Defense Logistics Agency on DDFG-T2/P3: 3D...SCAN SYSTEMS INTEGRATION Contract Number SPO100-95-D-1014 Contractor Ohio University Delivery Order # 0001 Delivery Order Title 3D Scan Systems

  10. EFIT 3D Reconstruction and Recent Developments

    NASA Astrophysics Data System (ADS)

    Lao, L. L.; Chu, M. S.; St. John, H. E.; Strait, E. J.; Turnbull, A. D.; Ren, Q.; Jeon, Y. M.; Flannagan, D.

    2007-11-01

    Recent 3D extension of the EFIT equilibrium reconstruction code to model toroidally asymmetric effects due to error and externally applied perturbation magnetic fields and other developments are presented. The 3D extension is based on an expansion of the MHD equations. Other developments include a new computational structure based on Fortran 90/95 with a unified interface that can conveniently accommodate different tokamak devices and grid sizes, as well as a Python-based GUI. New computational links that allow easy integration with transport and stability physics modules to facilitate kinetic reconstruction and stability analysis are also being developed. A new more complete uncertainty matrix for magnetic diagnostics based on knowledge about their fabrication, installation, calibration, and operation has also been implemented into EFIT and tested. Reconstructions with the new magnetic uncertainty matrix yield results similar to those using the existing one but with more realistic fitting merit figures.

  11. Low Complexity Mode Decision for 3D-HEVC

    PubMed Central

    Li, Nana; Gan, Yong

    2014-01-01

    High efficiency video coding- (HEVC-) based 3D video coding (3D-HEVC) developed by joint collaborative team on 3D video coding (JCT-3V) for multiview video and depth map is an extension of HEVC standard. In the test model of 3D-HEVC, variable coding unit (CU) size decision and disparity estimation (DE) are introduced to achieve the highest coding efficiency with the cost of very high computational complexity. In this paper, a fast mode decision algorithm based on variable size CU and DE is proposed to reduce 3D-HEVC computational complexity. The basic idea of the method is to utilize the correlations between depth map and motion activity in prediction mode where variable size CU and DE are needed, and only in these regions variable size CU and DE are enabled. Experimental results show that the proposed algorithm can save about 43% average computational complexity of 3D-HEVC while maintaining almost the same rate-distortion (RD) performance. PMID:25254237

  12. 3D polymer scaffold arrays.

    PubMed

    Simon, Carl G; Yang, Yanyin; Dorsey, Shauna M; Ramalingam, Murugan; Chatterjee, Kaushik

    2011-01-01

    We have developed a combinatorial platform for fabricating tissue scaffold arrays that can be used for screening cell-material interactions. Traditional research involves preparing samples one at a time for characterization and testing. Combinatorial and high-throughput (CHT) methods lower the cost of research by reducing the amount of time and material required for experiments by combining many samples into miniaturized specimens. In order to help accelerate biomaterials research, many new CHT methods have been developed for screening cell-material interactions where materials are presented to cells as a 2D film or surface. However, biomaterials are frequently used to fabricate 3D scaffolds, cells exist in vivo in a 3D environment and cells cultured in a 3D environment in vitro typically behave more physiologically than those cultured on a 2D surface. Thus, we have developed a platform for fabricating tissue scaffold libraries where biomaterials can be presented to cells in a 3D format.

  13. Autofocus for 3D imaging

    NASA Astrophysics Data System (ADS)

    Lee-Elkin, Forest

    2008-04-01

    Three dimensional (3D) autofocus remains a significant challenge for the development of practical 3D multipass radar imaging. The current 2D radar autofocus methods are not readily extendable across sensor passes. We propose a general framework that allows a class of data adaptive solutions for 3D auto-focus across passes with minimal constraints on the scene contents. The key enabling assumption is that portions of the scene are sparse in elevation which reduces the number of free variables and results in a system that is simultaneously solved for scatterer heights and autofocus parameters. The proposed method extends 2-pass interferometric synthetic aperture radar (IFSAR) methods to an arbitrary number of passes allowing the consideration of scattering from multiple height locations. A specific case from the proposed autofocus framework is solved and demonstrates autofocus and coherent multipass 3D estimation across the 8 passes of the "Gotcha Volumetric SAR Data Set" X-Band radar data.

  14. Combinatorial 3D Mechanical Metamaterials

    NASA Astrophysics Data System (ADS)

    Coulais, Corentin; Teomy, Eial; de Reus, Koen; Shokef, Yair; van Hecke, Martin

    2015-03-01

    We present a class of elastic structures which exhibit 3D-folding motion. Our structures consist of cubic lattices of anisotropic unit cells that can be tiled in a complex combinatorial fashion. We design and 3d-print this complex ordered mechanism, in which we combine elastic hinges and defects to tailor the mechanics of the material. Finally, we use this large design space to encode smart functionalities such as surface patterning and multistability.

  15. General mechanism and dynamics of the solar wind interaction with lunar magnetic anomalies from 3-D particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Deca, Jan; Divin, Andrey; Lembège, Bertrand; Horányi, Mihály; Markidis, Stefano; Lapenta, Giovanni

    2015-08-01

    We present a general model of the solar wind interaction with a dipolar lunar crustal magnetic anomaly (LMA) using three-dimensional full-kinetic and electromagnetic simulations. We confirm that LMAs may indeed be strong enough to stand off the solar wind from directly impacting the lunar surface, forming a so-called "minimagnetosphere," as suggested by spacecraft observations and theory. We show that the LMA configuration is driven by electron motion because its scale size is small with respect to the gyroradius of the solar wind ions. We identify a population of back-streaming ions, the deflection of magnetized electrons via the E × B drift motion, and the subsequent formation of a halo region of elevated density around the dipole source. Finally, it is shown that the presence and efficiency of the processes are heavily impacted by the upstream plasma conditions and, on their turn, influence the overall structure and evolution of the LMA system. Understanding the detailed physics of the solar wind interaction with LMAs, including magnetic shielding, particle dynamics and surface charging is vital to evaluate its implications for lunar exploration.

  16. Particle-In-Cell Simulations of the Solar Wind Interaction with Lunar Crustal Magnetic Anomalies: Magnetic Cusp Regions

    NASA Technical Reports Server (NTRS)

    Poppe, A. R.; Halekas, J. S.; Delory, G. T.; Farrell, W. M.

    2012-01-01

    As the solar wind is incident upon the lunar surface, it will occasionally encounter lunar crustal remanent magnetic fields. These magnetic fields are small-scale, highly non-dipolar, have strengths up to hundreds of nanotesla, and typically interact with the solar wind in a kinetic fashion. Simulations, theoretical analyses, and spacecraft observations have shown that crustal fields can reflect solar wind protons via a combination of magnetic and electrostatic reflection; however, analyses of surface properties have suggested that protons may still access the lunar surface in the cusp regions of crustal magnetic fields. In this first report from a planned series of studies, we use a 1 1/2-dimensional, electrostatic particle-in-cell code to model the self-consistent interaction between the solar wind, the cusp regions of lunar crustal remanent magnetic fields, and the lunar surface. We describe the self-consistent electrostatic environment within crustal cusp regions and discuss the implications of this work for the role that crustal fields may play regulating space weathering of the lunar surface via proton bombardment.

  17. Comparison of particle-in-cell simulation with experiment for thetransport system of the superconducting electron cyclotron resonance ionsource VENUS

    SciTech Connect

    Todd, DamonS.; Leitner, Daniela; Leitner, Matthaeus; Lyneis,Claude M.; Qiang, Ji; Grote, Dave P.

    2005-09-19

    The three-dimensional, particle-in-cell code WARP has been enhanced to allow end-to-end beam dynamics simulations of the VENUS beam transport system from the extraction region, through a mass-analyzing magnet, and up to a two-axis emittance scanner. This paper presents first results of comparisons between simulation and experimental data. A helium beam (He+, He2+) is chosen as an initial comparison beam due to its simple mass spectrum. Although a number of simplifications are made for the initial extracted beam, aberration characteristics appear in simulations that are also present in experimental phase space current density measurements. Further, measurements of phase space tilt indicate that simulations must have little or no space charge neutralization along the transport system to best agree with experiment. In addition, recent measurements of triangular beam structure immediately after the source are presented. This beam structure is related to the source magnetic confinement fields and will need to be taken into account as the initial beam approximations are lifted.

  18. Monte Carlo approach to calculate proton stopping in warm dense matter within particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Wu, D.; He, X. T.; Yu, W.; Fritzsche, S.

    2017-02-01

    A Monte Carlo approach to proton stopping in warm dense matter is implemented into an existing particle-in-cell code. This approach is based on multiple electron-electron, electron-ion, and ion-ion binary collision and accounts for both the free and the bound electrons in the plasmas. This approach enables one to calculate the stopping of particles in a more natural manner than existing theoretical treatment. In the low-temperature limit, when "all" electrons are bound to the nucleus, the stopping power coincides with the predictions from the Bethe-Bloch formula and is consistent with the data from the National Institute of Standard and Technology database. At higher temperatures, some of the bound electrons are ionized, and this increases the stopping power in the plasmas, as demonstrated by A. B. Zylstra et al. [Phys. Rev. Lett. 114, 215002 (2015)], 10.1103/PhysRevLett.114.215002. At even higher temperatures, the degree of ionization reaches a maximum and thus decreases the stopping power due to the suppression of collision frequency between projected proton beam and hot plasmas in the target.

  19. Study of self-consistent particle flows in a plasma blob with particle-in-cell simulations

    SciTech Connect

    Hasegawa, Hiroki Ishiguro, Seiji

    2015-10-15

    The self-consistent particle flows in a filamentary coherent structure along the magnetic field line in scrape-off layer (SOL) plasma (plasma blob) have been investigated by means of a three-dimensional electrostatic particle-in-cell simulation code. The presence of the spiral current system composed of the diamagnetic and parallel currents in a blob is confirmed by the particle simulation without any assumed sheath boundary models. Furthermore, the observation of the electron and ion parallel velocity distributions in a blob shows that those distributions are far from Maxwellian due to modification with the sheath formation and that the electron temperature on the higher potential side in a blob is higher than that on the lower potential side. Also, it is found that the ions on the higher potential side are accelerated more intensively along the magnetic field line than those on the lower potential side near the edge. This study indicates that particle simulations are able to provide an exact current closure to analysis of blob dynamics and will bring more accurate prediction of plasma transport in the SOL without any empirical assumptions.

  20. Design and development of a multi-architecture, fully implicit, charge and energy conserving particle-in-cell framework

    NASA Astrophysics Data System (ADS)

    Payne, Joshua; Knoll, Dana; McPherson, Allen; Taitano, William; Chacon, Luis; Chen, Guangye; Pakin, Scott

    2013-10-01

    As computer architectures become increasingly heterogeneous the need for algorithms and applications that can utilize these new architectures grows more pressing. CoCoPIC is a fully implicit charge and energy conserving particle-in-cell framework developed as part of the Computational Co-Design for Multi-Scale Applications in the Natural Sciences (CoCoMANS) project at Los Alamos National Laboratory. CoCoMANS is a multi-disciplinary computational co-design effort with the goal of developing new algorithms for emerging architectures using multi-scale applications. This poster will present the co-design process evolved within CoCoMANS, and details regarding the design and development of multi-architecture framework for a plasma application. This framework utilizes multiple abstraction layers in order to maximize code reuse between architectures, while providing low level abstractions to incorporate architecture specific operation optimizations such as vectorizations or hardware fused multiply-add. CoCoPIC's target problems include 1D3V slow shocks, and 2D3V magnetic island coalescence. Results of the multi-core development and optimization process will be presented.

  1. Mesh refinement for particle-in-cell plasma simulations: Applications to - and benefits for - heavy ion fusion

    SciTech Connect

    Vay, J.L.; Colella, P.; McCorquodale, P.; Van Straalen, B.; Friedman, A.; Grote, D.P.

    2002-05-24

    The numerical simulation of the driving beams in a heavy ion fusion power plant is a challenging task, and simulation of the power plant as a whole, or even of the driver, is not yet possible. Despite the rapid progress in computer power, past and anticipated, one must consider the use of the most advanced numerical techniques, if they are to reach the goal expeditiously. One of the difficulties of these simulations resides in the disparity of scales, in time and in space, which must be resolved. When these disparities are in distinctive zones of the simulation region, a method which has proven to be effective in other areas (e.g., fluid dynamics simulations) is the mesh refinement technique. They discuss the challenges posed by the implementation of this technique into plasma simulations (due to the presence of particles and electromagnetic waves). They present the prospects for and projected benefits of its application to heavy ion fusion, in particular to the simulation of the ion source and the final beam propagation in the chamber. A Collaboration project is under way at LBNL between the Applied Numerical Algorithms Group (ANAG) and the HIF group to couple the Adaptive Mesh Refinement (AMR) library CHOMBO developed by the ANAG group to the Particle-In-Cell accelerator code (WARP) developed by the HIF-VNL. They describe their progress and present their initial findings.

  2. A comparison of weak-turbulence and particle-in-cell simulations of weak electron-beam plasma interaction

    SciTech Connect

    Ratcliffe, H. Brady, C. S.; Che Rozenan, M. B.; Nakariakov, V. M.

    2014-12-15

    Quasilinear theory has long been used to treat the problem of a weak electron beam interacting with plasma and generating Langmuir waves. Its extension to weak-turbulence theory treats resonant interactions of these Langmuir waves with other plasma wave modes, in particular, ion-sound waves. These are strongly damped in plasma of equal ion and electron temperatures, as sometimes seen in, for example, the solar corona and wind. Weak turbulence theory is derived in the weak damping limit, with a term describing ion-sound wave damping then added. In this paper, we use the EPOCH particle-in-cell code to numerically test weak turbulence theory for a range of electron-ion temperature ratios. We find that in the cold ion limit, the results agree well, but for increasing ion temperature the three-wave resonance becomes broadened in proportion to the ion-sound wave damping rate. Additionally, we establish lower limits on the number of simulation particles needed to accurately reproduce the electron and wave distributions in their saturated states and to reproduce their intermediate states and time evolution. These results should be taken into consideration in, for example, simulations of plasma wave generation in the solar corona of Type III solar radio bursts from the corona to the solar wind and in weak turbulence investigations of ion-acoustic lines in the ionosphere.

  3. The Multi Level Multi Domain (MLMD) method: a semi-implicit adaptive algorithm for Particle In Cell plasma simulations

    NASA Astrophysics Data System (ADS)

    Innocenti, Maria Elena; Beck, Arnaud; Markidis, Stefano; Lapenta, Giovanni

    2013-10-01

    Particle in Cell (PIC) simulations of plasmas are not bound anymore by the stability constraints of explicit algorithms. Semi implicit and fully implicit methods allow to use larger grid spacings and time steps. Adaptive Mesh Refinement (AMR) techniques permit to locally change the simulation resolution. The code proposed in Innocenti et al., 2013 and Beck et al., 2013 is however the first to combine the advantages of both. The use of the Implicit Moment Method allows to taylor the resolution used in each level to the physical scales of interest and to use high Refinement Factors (RF) between the levels. The Multi Level Multi Domain (MLMD) structure, where all levels are simulated as complete domains, conjugates algorithmic and practical advantages. The different levels evolve according to the local dynamics and achieve optimal level interlocking. Also, the capabilities of the Object Oriented programming model are fully exploited. The MLMD algorithm is demonstrated with magnetic reconnection and collisionless shocks simulations with very high RFs between the levels. Notable computational gains are achieved with respect to simulations performed on the entire domain with the higher resolution. Beck A. et al. (2013). submitted. Innocenti M. E. et al. (2013). JCP, 238(0):115-140.

  4. Particle-in-cell simulations of collisionless shock formation via head-on merging of two laboratory supersonic plasma jets

    SciTech Connect

    Thoma, C.; Welch, D. R.; Hsu, S. C.

    2013-08-15

    We describe numerical simulations, using the particle-in-cell (PIC) and hybrid-PIC code lsp[T. P. Hughes et al., Phys. Rev. ST Accel. Beams 2, 110401 (1999)], of the head-on merging of two laboratory supersonic plasma jets. The goals of these experiments are to form and study astrophysically relevant collisionless shocks in the laboratory. Using the plasma jet initial conditions (density ∼10{sup 14}–10{sup 16} cm{sup −3}, temperature ∼ few eV, and propagation speed ∼20–150 km/s), large-scale simulations of jet propagation demonstrate that interactions between the two jets are essentially collisionless at the merge region. In highly resolved one- and two-dimensional simulations, we show that collisionless shocks are generated by the merging jets when immersed in applied magnetic fields (B∼0.1–1 T). At expected plasma jet speeds of up to 150 km/s, our simulations do not give rise to unmagnetized collisionless shocks, which require much higher velocities. The orientation of the magnetic field and the axial and transverse density gradients of the jets have a strong effect on the nature of the interaction. We compare some of our simulation results with those of previously published PIC simulation studies of collisionless shock formation.

  5. 3-D Force-balanced Magnetospheric Configurations

    SciTech Connect

    Sorin Zaharia; C.Z. Cheng; K. Maezawa

    2003-02-10

    The knowledge of plasma pressure is essential for many physics applications in the magnetosphere, such as computing magnetospheric currents and deriving magnetosphere-ionosphere coupling. A thorough knowledge of the 3-D pressure distribution has however eluded the community, as most in-situ pressure observations are either in the ionosphere or the equatorial region of the magnetosphere. With the assumption of pressure isotropy there have been attempts to obtain the pressure at different locations by either (a) mapping observed data (e.g., in the ionosphere) along the field lines of an empirical magnetospheric field model or (b) computing a pressure profile in the equatorial plane (in 2-D) or along the Sun-Earth axis (in 1-D) that is in force balance with the magnetic stresses of an empirical model. However, the pressure distributions obtained through these methods are not in force balance with the empirical magnetic field at all locations. In order to find a global 3-D plasma pressure distribution in force balance with the magnetospheric magnetic field, we have developed the MAG-3D code, that solves the 3-D force balance equation J x B = (upside-down delta) P computationally. Our calculation is performed in a flux coordinate system in which the magnetic field is expressed in terms of Euler potentials as B = (upside-down delta) psi x (upside-down delta) alpha. The pressure distribution, P = P(psi,alpha), is prescribed in the equatorial plane and is based on satellite measurements. In addition, computational boundary conditions for y surfaces are imposed using empirical field models. Our results provide 3-D distributions of magnetic field and plasma pressure as well as parallel and transverse currents for both quiet-time and disturbed magnetospheric conditions.

  6. Crashdynamics with DYNA3D: Capabilities and research directions

    NASA Technical Reports Server (NTRS)

    Whirley, Robert G.; Engelmann, Bruce E.

    1993-01-01

    The application of the explicit nonlinear finite element analysis code DYNA3D to crashworthiness problems is discussed. Emphasized in the first part of this work are the most important capabilities of an explicit code for crashworthiness analyses. The areas with significant research promise for the computational simulation of crash events are then addressed.

  7. Effects of variations in electron thermal velocity on the whistler anisotropy instability: Particle-in-cell simulations

    NASA Astrophysics Data System (ADS)

    Hughes, R. Scott; Wang, Joseph; Decyk, Viktor K.; Gary, S. Peter

    2016-04-01

    This paper investigates how the physics of the whistler anisotropy instability (WAI) is affected by variations in the electron thermal velocity vte, referred to here in terms of the ratio v̂ t e=vt e/c , where c is the speed of light. The WAI is driven by the electron condition RT>1 , where RT=Te ⊥/Te ∥ is the temperature anisotropy ratio and ⊥/∥ signify directions perpendicular/parallel to the background magnetic field B0 . While a typical value of v̂ t e in the solar wind is ˜0.005 , electromagnetic (EM) particle-in-cell (PIC) simulations often use a value near 0.1 in order to maximize the computational time step. In this study, a two-dimensional (2D) Darwin particle-in-cell (DPIC) code, MDPIC2, is used. The time step in the DPIC model is not affected by the choice of v̂ t e , making DPIC suited for this study. A series of simulations are carried out under the condition that the electron βe is held fixed, while v̂ t e is varied over the range 0.1 ≥v̂ t e≥0.025 . The results show that, with βe held fixed, the linear dispersion properties and the nonlinear saturation amplitude and pitch angle scattering rates associated with the WAI are insensitive to the value of v̂ t e . A supplementary investigation is conducted which characterizes how the WAI model is affected at various values of v̂ t e by noise associated with the limited number of particles in a typical PIC simulation. It is found that the evolution of the WAI is more strongly influenced by electrostatic noise as v̂ t e is decreased. The electrostatic noise level is inversely proportional to the number of particles per computational cell ( Nc ); this implies that the number of particles required to remove nonphysical effects from the PIC simulation increases as v̂ t e decreases. It is concluded that PIC simulations of this instability which use an artificially large value of v̂ t e accurately reproduce the response of a cooler plasma as long as a realistic value of βe is used

  8. 3D PIC Simulations of Collisionless Shocks at Lunar Magnetic Anomalies and Their Role in Forming Lunar Swirls

    NASA Astrophysics Data System (ADS)

    Bamford, R. A.; Alves, E. P.; Cruz, F.; Kellett, B. J.; Fonseca, R. A.; Silva, L. O.; Trines, R. M. G. M.; Halekas, J. S.; Kramer, G.; Harnett, E.; Cairns, R. A.; Bingham, R.

    2016-10-01

    Investigation of the lunar crustal magnetic anomalies offers a comprehensive long-term data set of observations of small-scale magnetic fields and their interaction with the solar wind. In this paper a review of the observations of lunar mini-magnetospheres is compared quantifiably with theoretical kinetic-scale plasma physics and 3D particle-in-cell simulations. The aim of this paper is to provide a complete picture of all the aspects of the phenomena and to show how the observations from all the different and international missions interrelate. The analysis shows that the simulations are consistent with the formation of miniature (smaller than the ion Larmor orbit) collisionless shocks and miniature magnetospheric cavities, which has not been demonstrated previously. The simulations reproduce the finesse and form of the differential proton patterns that are believed to be responsible for the creation of both the “lunar swirls” and “dark lanes.” Using a mature plasma physics code like OSIRIS allows us, for the first time, to make a side-by-side comparison between model and space observations. This is shown for all of the key plasma parameters observed to date by spacecraft, including the spectral imaging data of the lunar swirls. The analysis of miniature magnetic structures offers insight into multi-scale mechanisms and kinetic-scale aspects of planetary magnetospheres.

  9. Design and 3D simulation of a two-cavity wide-gap relativistic klystron amplifier with high power injection

    SciTech Connect

    Bai Xianchen; Yang Jianhua; Zhang Jiande

    2012-08-15

    By using an electromagnetic particle-in-cell (PIC) code, an S-band two-cavity wide-gap klystron amplifier (WKA) loaded with washers/rods structure is designed and investigated for high power injection application. Influences of the washers/rods structure on the high frequency characteristics and the basic operation of the amplifier are presented. Generally, the rod structure has great impacts on the space-charge potential depression and the resonant frequency of the cavities. Nevertheless, if only the resonant frequency is tuned to the desired operation frequency, effects of the rod size on the basic operation of the amplifier are expected to be very weak. The 3-dimension (3-D) PIC simulation results show an output power of 0.98 GW corresponding to an efficiency of 33% for the WKA, with a 594 keV, 5 kA electron beam guided by an external magnetic field of 1.5 Tesla. Moreover, if a conductive plane is placed near the output gap, such as the electron collector, the beam potential energy can be further released, and the RF power can be increased to about 1.07 GW with the conversion efficiency of about 36%.

  10. 3D PIC-MCC simulations of discharge inception around a sharp anode in nitrogen/oxygen mixtures

    NASA Astrophysics Data System (ADS)

    Teunissen, Jannis; Ebert, Ute

    2016-08-01

    We investigate how photoionization, electron avalanches and space charge affect the inception of nanosecond pulsed discharges. Simulations are performed with a 3D PIC-MCC (particle-in-cell, Monte Carlo collision) model with adaptive mesh refinement for the field solver. This model, whose source code is available online, is described in the first part of the paper. Then we present simulation results in a needle-to-plane geometry, using different nitrogen/oxygen mixtures at atmospheric pressure. In these mixtures non-local photoionization is important for the discharge growth. The typical length scale for this process depends on the oxygen concentration. With 0.2% oxygen the discharges grow quite irregularly, due to the limited supply of free electrons around them. With 2% or more oxygen the development is much smoother. An almost spherical ionized region can form around the electrode tip, which increases in size with the electrode voltage. Eventually this inception cloud destabilizes into streamer channels. In our simulations, discharge velocities are almost independent of the oxygen concentration. We discuss the physical mechanisms behind these phenomena and compare our simulations with experimental observations.

  11. Sodium 3D COncentration MApping (COMA 3D) using 23Na and proton MRI

    NASA Astrophysics Data System (ADS)

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-10-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/h concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8 × 0.8 × 0.8 mm3 and imaging matrices of 60 × 60 × 60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/.

  12. Sodium 3D COncentration MApping (COMA 3D) Using 23Na and Proton MRI

    PubMed Central

    Truong, Milton L.; Harrington, Michael G.; Schepkin, Victor D.; Chekmenev, Eduard Y.

    2014-01-01

    Functional changes of sodium 3D MRI signals were converted into millimolar concentration changes using an open-source fully automated MATLAB toolbox. These concentration changes are visualized via 3D sodium concentration maps, and they are overlaid over conventional 3D proton images to provide high-resolution co-registration for easy correlation of functional changes to anatomical regions. Nearly 5000/hour concentration maps were generated on a personal computer (ca. 2012) using 21.1 T 3D sodium MRI brain images of live rats with spatial resolution of 0.8×0.8×0.8 mm3 and imaging matrices of 60×60×60. The produced concentration maps allowed for non-invasive quantitative measurement of in vivo sodium concentration in the normal rat brain as a functional response to migraine-like conditions. The presented work can also be applied to sodium-associated changes in migraine, cancer, and other metabolic abnormalities that can be sensed by molecular imaging. The MATLAB toolbox allows for automated image analysis of the 3D images acquired on the Bruker platform and can be extended to other imaging platforms. The resulting images are presented in a form of series of 2D slices in all three dimensions in native MATLAB and PDF formats. The following is provided: (a) MATLAB source code for image processing, (b) the detailed processing procedures, (c) description of the code and all sub-routines, (d) example data sets of initial and processed data. The toolbox can be downloaded at: http://www.vuiis.vanderbilt.edu/~truongm/COMA3D/ PMID:25261742

  13. Three-dimensional particle-in-cell simulations of a plasma jet/cloud streaming across a transverse magnetic field

    NASA Astrophysics Data System (ADS)

    Voitcu, Gabriel; Echim, Marius

    2014-05-01

    The dynamics of collisionless plasma jets/clouds in magnetic field configurations typical for the terrestrial magnetotail and frontside magnetosheath is a topic of interest for understanding the physics of the magnetosphere and its interaction with the solar wind. The presence of high-speed jets in the frontside magnetosheath has been recently proved experimentally by Cluster and THEMIS spacecrafts. There is increasing evidence that the bursty bulk flows in the magnetotail have jet-like features. In the present paper we use fully electromagnetic 3D explicit particle-in-cell (PIC) simulations to investigate the interaction of a localized three-dimensional plasma element/jet/cloud with a transverse magnetic field. We consider a plasma jet/cloud that moves in vacuum and perpendicular to an ambient magnetic field. Ampère and Faraday's laws are used to compute the self-consistent electric and magnetic fields on a three-dimensional spatial grid having a step-size of the order of the Debye length and using a time-step that resolves the plasma frequency. The initial magnetic field inside the simulation domain is uniform and the plasma bulk velocity at the beginning of the simulation is normal to the magnetic field direction. The total time scale of the simulation is of the order of few ion Larmor periods. Space and time variations of the plasma parameters and of the electromagnetic field are analyzed and discussed. We emphasize non-MHD effects like the energy-dispersion signatures at the edges of the plasma element, similar to results previously reported by Voitcu and Echim (2012) using test-kinetic simulations. Acknowledgments: Research supported by the European Community's Seventh Framework Programme (FP7/2007-2013) under grant agreement no. 313038/STORM, and a grant of the Romanian Ministry of National Education, CNCS - UEFISCDI, project number PN-II-ID-PCE-2012-4-0418.

  14. Visualization of 3D Geological Models on Google Earth

    NASA Astrophysics Data System (ADS)

    Choi, Y.; Um, J.; Park, M.

    2013-05-01

    Google Earth combines satellite imagery, aerial photography, thematic maps and various data sets to make a three-dimensional (3D) interactive image of the world. Currently, Google Earth is a popular visualization tool in a variety of fields and plays an increasingly important role not only for private users in daily life, but also for scientists, practitioners, policymakers and stakeholders in research and application. In this study, a method to visualize 3D geological models on Google Earth is presented. COLLAborative Design Activity (COLLADA, an open standard XML schema for establishing interactive 3D applications) was used to represent different 3D geological models such as borehole, fence section, surface-based 3D volume and 3D grid by triangle meshes (a set of triangles connected by their common edges or corners). In addition, we designed Keyhole Markup Language (KML, the XML-based scripting language of Google Earth) codes to import the COLLADA files into the 3D render window of Google Earth. The method was applied to the Grosmont formation in Alberta, Canada. The application showed that the combination of COLLADA and KML enables Google Earth to effectively visualize 3D geological structures and properties.; Visualization of the (a) boreholes, (b) fence sections, (c) 3D volume model and (d) 3D grid model of Grossmont formation on Google Earth

  15. From 3D view to 3D print

    NASA Astrophysics Data System (ADS)

    Dima, M.; Farisato, G.; Bergomi, M.; Viotto, V.; Magrin, D.; Greggio, D.; Farinato, J.; Marafatto, L.; Ragazzoni, R.; Piazza, D.

    2014-08-01

    In the last few years 3D printing is getting more and more popular and used in many fields going from manufacturing to industrial design, architecture, medical support and aerospace. 3D printing is an evolution of bi-dimensional printing, which allows to obtain a solid object from a 3D model, realized with a 3D modelling software. The final product is obtained using an additive process, in which successive layers of material are laid down one over the other. A 3D printer allows to realize, in a simple way, very complex shapes, which would be quite difficult to be produced with dedicated conventional facilities. Thanks to the fact that the 3D printing is obtained superposing one layer to the others, it doesn't need any particular work flow and it is sufficient to simply draw the model and send it to print. Many different kinds of 3D printers exist based on the technology and material used for layer deposition. A common material used by the toner is ABS plastics, which is a light and rigid thermoplastic polymer, whose peculiar mechanical properties make it diffusely used in several fields, like pipes production and cars interiors manufacturing. I used this technology to create a 1:1 scale model of the telescope which is the hardware core of the space small mission CHEOPS (CHaracterising ExOPlanets Satellite) by ESA, which aims to characterize EXOplanets via transits observations. The telescope has a Ritchey-Chrétien configuration with a 30cm aperture and the launch is foreseen in 2017. In this paper, I present the different phases for the realization of such a model, focusing onto pros and cons of this kind of technology. For example, because of the finite printable volume (10×10×12 inches in the x, y and z directions respectively), it has been necessary to split the largest parts of the instrument in smaller components to be then reassembled and post-processed. A further issue is the resolution of the printed material, which is expressed in terms of layers

  16. YouDash3D: exploring stereoscopic 3D gaming for 3D movie theaters

    NASA Astrophysics Data System (ADS)

    Schild, Jonas; Seele, Sven; Masuch, Maic

    2012-03-01

    Along with the success of the digitally revived stereoscopic cinema, events beyond 3D movies become attractive for movie theater operators, i.e. interactive 3D games. In this paper, we present a case that explores possible challenges and solutions for interactive 3D games to be played by a movie theater audience. We analyze the setting and showcase current issues related to lighting and interaction. Our second focus is to provide gameplay mechanics that make special use of stereoscopy, especially depth-based game design. Based on these results, we present YouDash3D, a game prototype that explores public stereoscopic gameplay in a reduced kiosk setup. It features live 3D HD video stream of a professional stereo camera rig rendered in a real-time game scene. We use the effect to place the stereoscopic effigies of players into the digital game. The game showcases how stereoscopic vision can provide for a novel depth-based game mechanic. Projected trigger zones and distributed clusters of the audience video allow for easy adaptation to larger audiences and 3D movie theater gaming.

  17. Speaking Volumes About 3-D

    NASA Technical Reports Server (NTRS)

    2002-01-01

    In 1999, Genex submitted a proposal to Stennis Space Center for a volumetric 3-D display technique that would provide multiple users with a 360-degree perspective to simultaneously view and analyze 3-D data. The futuristic capabilities of the VolumeViewer(R) have offered tremendous benefits to commercial users in the fields of medicine and surgery, air traffic control, pilot training and education, computer-aided design/computer-aided manufacturing, and military/battlefield management. The technology has also helped NASA to better analyze and assess the various data collected by its satellite and spacecraft sensors. Genex capitalized on its success with Stennis by introducing two separate products to the commercial market that incorporate key elements of the 3-D display technology designed under an SBIR contract. The company Rainbow 3D(R) imaging camera is a novel, three-dimensional surface profile measurement system that can obtain a full-frame 3-D image in less than 1 second. The third product is the 360-degree OmniEye(R) video system. Ideal for intrusion detection, surveillance, and situation management, this unique camera system offers a continuous, panoramic view of a scene in real time.

  18. Sheath and presheath in ion-ion plasmas via particle-in-cell simulation

    SciTech Connect

    Meige, A.; Leray, G.; Raimbault, J.-L.; Chabert, P.

    2008-02-11

    A full particle-in-cell simulation is developed to investigate electron-free plasmas constituted of positive and negative ions under the influence of a dc bias voltage. It is shown that high-voltage sheaths following the classical Child-law sheaths form within a few microseconds (which corresponds to the ion transit time) after the dc voltage is applied. It is also shown that there exists the equivalent of a Bohm criterion where a presheath accelerates the ions collected at one of the electrodes up to the sound speed before they enter the sheath. From an applied perspective, this leads to smaller sheaths than one would expect.

  19. Physical Fidelity in Particle-In-Cell Modeling of Small Debye-Length Plasmas

    SciTech Connect

    Shadwick, B.A.; Schroeder, C.B.

    2008-08-01

    The connection between macro-particle shape functions and non-physical phase-space"heating" in the particle-in-cell (PIC) algorithm is examined. The development of fine-scale phasespace structures starting from a cold initial condition is shown to be related to spatial correlations in the interpolated fields used in the Lorentz force. It is shown that the plasma evolution via the PIC algorithm from a cold initial condition leads to a state that is not consistent with that of a thermal plasma.

  20. Nonequilibrium Gyrokinetic Fluctuation Theory and Sampling Noise in Gyrokinetic Particle-in-cell Simulations

    SciTech Connect

    John A. Krommes

    2007-10-09

    The present state of the theory of fluctuations in gyrokinetic GK plasmas and especially its application to sampling noise in GK particle-in-cell PIC simulations is reviewed. Topics addressed include the Δf method, the fluctuation-dissipation theorem for both classical and GK many-body plasmas, the Klimontovich formalism, sampling noise in PIC simulations, statistical closure for partial differential equations, the theoretical foundations of spectral balance in the presence of arbitrary noise sources, and the derivation of Kadomtsev-type equations from the general formalism.

  1. Physical Fidelity in Particle-In-Cell Modeling of Small Debye-Length Plasmas

    SciTech Connect

    Shadwick, B. A.; Schroeder, C. B.

    2009-01-22

    The connection between macro-particle shape functions and non-physical phase-space 'heating' in the particle-in-cell (PIC) algorithm is examined. The development of fine-scale phase-space structures starting from a cold initial condition is shown to be related to spatial correlations in the interpolated fields used in the Lorentz force. It is shown that the plasma evolution via the PIC algorithm from a cold initial condition leads to a state that is not consistent with that of a thermal plasma.

  2. Global particle-in-cell simulations of plasma pressure effects on Alfvenic modes

    SciTech Connect

    Mishchenko, Alexey; Koenies, Axel; Hatzky, Roman

    2011-01-15

    Global linear gyrokinetic particle-in-cell simulations of electromagnetic modes in realistic tokamak geometry are reported. The effect of plasma pressure on Alfvenic modes is studied. It is shown that the fast-particle pressure can considerably affect the shear Alfven wave continuum structure and hence the toroidicity-induced gap in the continuum. It is also found that the energetic ions can substantially reduce the growth rate of the ballooning modes (and perhaps completely stabilize them in a certain parameter range). Ballooning modes are found to be the dominant instabilities if the bulk-plasma pressure gradient is large enough.

  3. Particle-in-cell simulations of ambipolar and nonambipolar diffusion in magnetized plasmas

    SciTech Connect

    Lafleur, T.; Boswell, R. W.

    2012-05-15

    Using a two-dimensional particle-in-cell simulation, we investigate cross-field diffusion in low-pressure magnetized plasmas both in the presence and absence of conducting axial boundaries. With no axial boundary, the cross-field diffusion is observed to be ambipolar, as expected. However, when axial boundaries are added, the diffusion becomes distinctly nonambipolar. Electrons are prevented from escaping to the transverse walls and are preferentially removed from the discharge along the magnetic field lines, thus allowing quasi-neutrality to be maintained via a short-circuit effect at the axial boundaries.

  4. Particle-in-cell modeling of gas-confined barrier discharge

    NASA Astrophysics Data System (ADS)

    Levko, Dmitry; Raja, Laxminarayan L.

    2016-04-01

    Gas-confined barrier discharge is studied using the one-dimensional Particle-in-Cell Monte Carlo Collisions model for the conditions reported by Guerra-Garcia and Martinez-Sanchez [Appl. Phys. Lett. 106, 041601 (2015)]. Depending on the applied voltage, two modes of discharge are observed. In the first mode, the discharge develops in the entire interelectrode gap. In the second mode, the discharge is ignited and develops only in the gas layer having smaller breakdown voltage. The one-dimensional model shows that for the conditions considered, there is no streamer stage of breakdown as is typical for a traditional dielectric barrier discharge.

  5. Geometric integration of the Vlasov-Maxwell system with a variational particle-in-cell scheme

    NASA Astrophysics Data System (ADS)

    Squire, Jonathan; Qin, Hong; Tang, William

    2012-10-01

    A fully variational, unstructured, electromagnetic particle-in-cell integrator is developed for integration of the Vlasov-Maxwell equations. Using the formalism of Discrete Exterior Calculus [1], the field solver, interpolation scheme and particle advance algorithm are derived through minimization of a single discrete field theory action. As a consequence of ensuring that the action is invariant under discrete electromagnetic gauge transformations, the integrator exactly conserves Gauss's law. This work was supported by USDOE Contract DE-AC02-09CH11466.[4pt] [1] M. Desbrun, A. N. Hirani, M. Leok, and J. E. Marsden, (2005), arXiv:math/0508341

  6. AB INITIO PULSAR MAGNETOSPHERE: THREE-DIMENSIONAL PARTICLE-IN-CELL SIMULATIONS OF AXISYMMETRIC PULSARS

    SciTech Connect

    Philippov, Alexander A.; Spitkovsky, Anatoly

    2014-04-20

    We perform ''first-principles'' relativistic particle-in-cell simulations of aligned pulsar magnetosphere. We allow free escape of particles from the surface of a neutron star and continuously populate the magnetosphere with neutral pair plasma to imitate pair production. As pair plasma supply increases, we observe the transition from a charge-separated ''electrosphere'' solution with trapped plasma and no spin-down to a solution close to the ideal force-free magnetosphere with electromagnetically dominated pulsar wind. We calculate the magnetospheric structure, current distribution, and spin-down power of the neutron star. We also discuss particle acceleration in the equatorial current sheet.

  7. Particle-in-cell simulations of the runaway breakdown of nitrogen

    SciTech Connect

    Levko, D.; Krasik, Ya. E.

    2012-12-01

    The runaway breakdown initiated by a mono-energetic beam of runaway electrons propagating through a cathode-anode gap filled with nitrogen at atmospheric pressure is studied using the one-dimensional particle-in-cell numerical model. It is shown that the breakdown is strongly influenced by the amplitude of the beam, its duration, and the electric field in the vicinity of the cathode. In addition, the simulation results showed that, in spite of the formation of rather dense plasma inside the cathode-anode gap by runaway electrons, the electric field is not screened because of frequent electron-neutral collisions.

  8. Macrophage podosomes go 3D.

    PubMed

    Van Goethem, Emeline; Guiet, Romain; Balor, Stéphanie; Charrière, Guillaume M; Poincloux, Renaud; Labrousse, Arnaud; Maridonneau-Parini, Isabelle; Le Cabec, Véronique

    2011-01-01

    Macrophage tissue infiltration is a critical step in the immune response against microorganisms and is also associated with disease progression in chronic inflammation and cancer. Macrophages are constitutively equipped with specialized structures called podosomes dedicated to extracellular matrix (ECM) degradation. We recently reported that these structures play a critical role in trans-matrix mesenchymal migration mode, a protease-dependent mechanism. Podosome molecular components and their ECM-degrading activity have been extensively studied in two dimensions (2D), but yet very little is known about their fate in three-dimensional (3D) environments. Therefore, localization of podosome markers and proteolytic activity were carefully examined in human macrophages performing mesenchymal migration. Using our gelled collagen I 3D matrix model to obligate human macrophages to perform mesenchymal migration, classical podosome markers including talin, paxillin, vinculin, gelsolin, cortactin were found to accumulate at the tip of F-actin-rich cell protrusions together with β1 integrin and CD44 but not β2 integrin. Macrophage proteolytic activity was observed at podosome-like protrusion sites using confocal fluorescence microscopy and electron microscopy. The formation of migration tunnels by macrophages inside the matrix was accomplished by degradation, engulfment and mechanic compaction of the matrix. In addition, videomicroscopy revealed that 3D F-actin-rich protrusions of migrating macrophages were as dynamic as their 2D counterparts. Overall, the specifications of 3D podosomes resembled those of 2D podosome rosettes rather than those of individual podosomes. This observation was further supported by the aspect of 3D podosomes in fibroblasts expressing Hck, a master regulator of podosome rosettes in macrophages. In conclusion, human macrophage podosomes go 3D and take the shape of spherical podosome rosettes when the cells perform mesenchymal migration. This work

  9. 3D Printed Bionic Nanodevices.

    PubMed

    Kong, Yong Lin; Gupta, Maneesh K; Johnson, Blake N; McAlpine, Michael C

    2016-06-01

    The ability to three-dimensionally interweave biological and functional materials could enable the creation of bionic devices possessing unique and compelling geometries, properties, and functionalities. Indeed, interfacing high performance active devices with biology could impact a variety of fields, including regenerative bioelectronic medicines, smart prosthetics, medical robotics, and human-machine interfaces. Biology, from the molecular scale of DNA and proteins, to the macroscopic scale of tissues and organs, is three-dimensional, often soft and stretchable, and temperature sensitive. This renders most biological platforms incompatible with the fabrication and materials processing methods that have been developed and optimized for functional electronics, which are typically planar, rigid and brittle. A number of strategies have been developed to overcome these dichotomies. One particularly novel approach is the use of extrusion-based multi-material 3D printing, which is an additive manufacturing technology that offers a freeform fabrication strategy. This approach addresses the dichotomies presented above by (1) using 3D printing and imaging for customized, hierarchical, and interwoven device architectures; (2) employing nanotechnology as an enabling route for introducing high performance materials, with the potential for exhibiting properties not found in the bulk; and (3) 3D printing a range of soft and nanoscale materials to enable the integration of a diverse palette of high quality functional nanomaterials with biology. Further, 3D printing is a multi-scale platform, allowing for the incorporation of functional nanoscale inks, the printing of microscale features, and ultimately the creation of macroscale devices. This blending of 3D printing, novel nanomaterial properties, and 'living' platforms may enable next-generation bionic systems. In this review, we highlight this synergistic integration of the unique properties of nanomaterials with the

  10. Petal, terrain & airbags - 3D

    NASA Technical Reports Server (NTRS)

    1997-01-01

    Portions of the lander's deflated airbags and a petal are at the lower area of this image, taken in stereo by the Imager for Mars Pathfinder (IMP) on Sol 3. 3D glasses are necessary to identify surface detail. The metallic object at lower right is part of the lander's low-gain antenna. This image is part of a 3D 'monster

    Click below to see the left and right views individually. [figure removed for brevity, see original site] Left [figure removed for brevity, see original site] Right

  11. Defragged Binary I Ching Genetic Code Chromosomes Compared to Nirenberg's and Transformed into Rotating 2D Circles and Squares and into a 3D 100% Symmetrical Tetrahedron Coupled to a Functional One to Discern Start From Non-Start Methionines through a Stella Octangula.

    PubMed

    Castro-Chavez, Fernando

    2012-01-01

    BACKGROUND: Three binary representations of the genetic code according to the ancient I Ching of Fu-Xi will be presented, depending on their defragging capabilities by pairing based on three biochemical properties of the nucleic acids: H-bonds, Purine/Pyrimidine rings, and the Keto-enol/Amino-imino tautomerism, yielding the last pair a 32/32 single-strand self-annealed genetic code and I Ching tables. METHODS: Our working tool is the ancient binary I Ching's resulting genetic code chromosomes defragged by vertical and by horizontal pairing, reverse engineered into non-binaries of 2D rotating 4×4×4 circles and 8×8 squares and into one 3D 100% symmetrical 16×4 tetrahedron coupled to a functional tetrahedron with apical signaling and central hydrophobicity (codon formula: 4[1(1)+1(3)+1(4)+4(2)]; 5:5, 6:6 in man) forming a stella octangula, and compared to Nirenberg's 16×4 codon table (1965) pairing the first two nucleotides of the 64 codons in axis y. RESULTS: One horizontal and one vertical defragging had the start Met at the center. Two, both horizontal and vertical pairings produced two pairs of 2×8×4 genetic code chromosomes naturally arranged (M and I), rearranged by semi-introversion of central purines or pyrimidines (M' and I') and by clustering hydrophobic amino acids; their quasi-identity was disrupted by amino acids with odd codons (Met and Tyr pairing to Ile and TGA Stop); in all instances, the 64-grid 90° rotational ability was restored. CONCLUSIONS: We defragged three I Ching representations of the genetic code while emphasizing Nirenberg's historical finding. The synthetic genetic code chromosomes obtained reflect the protective strategy of enzymes with a similar function, having both humans and mammals a biased G-C dominance of three H-bonds in the third nucleotide of their most used codons per amino acid, as seen in one chromosome of the i, M and M' genetic codes, while a two H-bond A-T dominance was found in their complementary chromosome, as

  12. Defragged Binary I Ching Genetic Code Chromosomes Compared to Nirenberg’s and Transformed into Rotating 2D Circles and Squares and into a 3D 100% Symmetrical Tetrahedron Coupled to a Functional One to Discern Start From Non-Start Methionines through a Stella Octangula

    PubMed Central

    Castro-Chavez, Fernando

    2012-01-01

    Background Three binary representations of the genetic code according to the ancient I Ching of Fu-Xi will be presented, depending on their defragging capabilities by pairing based on three biochemical properties of the nucleic acids: H-bonds, Purine/Pyrimidine rings, and the Keto-enol/Amino-imino tautomerism, yielding the last pair a 32/32 single-strand self-annealed genetic code and I Ching tables. Methods Our working tool is the ancient binary I Ching's resulting genetic code chromosomes defragged by vertical and by horizontal pairing, reverse engineered into non-binaries of 2D rotating 4×4×4 circles and 8×8 squares and into one 3D 100% symmetrical 16×4 tetrahedron coupled to a functional tetrahedron with apical signaling and central hydrophobicity (codon formula: 4[1(1)+1(3)+1(4)+4(2)]; 5:5, 6:6 in man) forming a stella octangula, and compared to Nirenberg's 16×4 codon table (1965) pairing the first two nucleotides of the 64 codons in axis y. Results One horizontal and one vertical defragging had the start Met at the center. Two, both horizontal and vertical pairings produced two pairs of 2×8×4 genetic code chromosomes naturally arranged (M and I), rearranged by semi-introversion of central purines or pyrimidines (M' and I') and by clustering hydrophobic amino acids; their quasi-identity was disrupted by amino acids with odd codons (Met and Tyr pairing to Ile and TGA Stop); in all instances, the 64-grid 90° rotational ability was restored. Conclusions We defragged three I Ching representations of the genetic code while emphasizing Nirenberg's historical finding. The synthetic genetic code chromosomes obtained reflect the protective strategy of enzymes with a similar function, having both humans and mammals a biased G-C dominance of three H-bonds in the third nucleotide of their most used codons per amino acid, as seen in one chromosome of the i, M and M' genetic codes, while a two H-bond A-T dominance was found in their complementary chromosome, as seen

  13. RELAP5-3D Developer Guidelines and Programming Practices

    SciTech Connect

    Dr. George L Mesina

    2014-03-01

    Our ultimate goal is to create and maintain RELAP5-3D as the best software tool available to analyze nuclear power plants. This begins with writing excellent programming and requires thorough testing. This document covers development of RELAP5-3D software, the behavior of the RELAP5-3D program that must be maintained, and code testing. RELAP5-3D must perform in a manner consistent with previous code versions with backward compatibility for the sake of the users. Thus file operations, code termination, input and output must remain consistent in form and content while adding appropriate new files, input and output as new features are developed. As computer hardware, operating systems, and other software change, RELAP5-3D must adapt and maintain performance. The code must be thoroughly tested to ensure that it continues to perform robustly on the supported platforms. The coding must be written in a consistent manner that makes the program easy to read to reduce the time and cost of development, maintenance and error resolution. The programming guidelines presented her are intended to institutionalize a consistent way of writing FORTRAN code for the RELAP5-3D computer program that will minimize errors and rework. A common format and organization of program units creates a unifying look and feel to the code. This in turn increases readability and reduces time required for maintenance, development and debugging. It also aids new programmers in reading and understanding the program. Therefore, when undertaking development of the RELAP5-3D computer program, the programmer must write computer code that follows these guidelines. This set of programming guidelines creates a framework of good programming practices, such as initialization, structured programming, and vector-friendly coding. It sets out formatting rules for lines of code, such as indentation, capitalization, spacing, etc. It creates limits on program units, such as subprograms, functions, and modules. It

  14. 3D Hall MHD Reconnection Dynamics

    NASA Astrophysics Data System (ADS)

    Huba, J. D.; Rudakov, L.

    2002-05-01

    A 3D Hall MHD simulation code (VooDoo) has recently been developed at the Naval Research Laboratory. We present preliminary results of a fully 3D magnetic reconnection study using this code. The initial configuration of the plasma system is as follows. The ambient, reversed magnetic field is in the x-direction and is proportional to B0 tanh(y/Ly) where Ly is the scale length of the current sheet. Perturbation fields δ Bx and δ By are introduced to initiate the reconnection process. This initial configuration is similar to that used in the 2D GEM reconnection study. However, the perturbation fields are localized in the z-direction. We consider two cases: no guide field (Bz = 0) and a weak guide field (Bz = 0.1B0). We find that the reconnection process is not stationary in the z-direction but propagates in the B x ∇ n direction consistent with Hall drift physics. Hence, an asymmetric disruption of the current sheet ensues. The flow structure of the plasma in the vicinity of the X-point is complex. We find that the `neutral line' (i.e, along the z-direction) is not an ignorable coordinate and is not periodic in Hall MHD reconnection dynamics; two assumptions that are often made in reconnection studies. \\ Research supported by NASA and ONR

  15. A three-dimensional electrostatic particle-in-cell methodology on unstructured Delaunay-Voronoi grids

    SciTech Connect

    Gatsonis, Nikolaos A. Spirkin, Anton

    2009-06-01

    The mathematical formulation and computational implementation of a three-dimensional particle-in-cell methodology on unstructured Delaunay-Voronoi tetrahedral grids is presented. The method allows simulation of plasmas in complex domains and incorporates the duality of the Delaunay-Voronoi in all aspects of the particle-in-cell cycle. Charge assignment and field interpolation weighting schemes of zero- and first-order are formulated based on the theory of long-range constraints. Electric potential and fields are derived from a finite-volume formulation of Gauss' law using the Voronoi-Delaunay dual. Boundary conditions and the algorithms for injection, particle loading, particle motion, and particle tracking are implemented for unstructured Delaunay grids. Error and sensitivity analysis examines the effects of particles/cell, grid scaling, and timestep on the numerical heating, the slowing-down time, and the deflection times. The problem of current collection by cylindrical Langmuir probes in collisionless plasmas is used for validation. Numerical results compare favorably with previous numerical and analytical solutions for a wide range of probe radius to Debye length ratios, probe potentials, and electron to ion temperature ratios. The versatility of the methodology is demonstrated with the simulation of a complex plasma microsensor, a directional micro-retarding potential analyzer that includes a low transparency micro-grid.

  16. The World of 3-D.

    ERIC Educational Resources Information Center

    Mayshark, Robin K.

    1991-01-01

    Students explore three-dimensional properties by creating red and green wall decorations related to Christmas. Students examine why images seem to vibrate when red and green pieces are small and close together. Instructions to conduct the activity and construct 3-D glasses are given. (MDH)

  17. 3D Printing: Exploring Capabilities

    ERIC Educational Resources Information Center

    Samuels, Kyle; Flowers, Jim

    2015-01-01

    As 3D printers become more affordable, schools are using them in increasing numbers. They fit well with the emphasis on product design in technology and engineering education, allowing students to create high-fidelity physical models to see and test different iterations in their product designs. They may also help students to "think in three…

  18. Making Inexpensive 3-D Models

    ERIC Educational Resources Information Center

    Manos, Harry

    2016-01-01

    Visual aids are important to student learning, and they help make the teacher's job easier. Keeping with the "TPT" theme of "The Art, Craft, and Science of Physics Teaching," the purpose of this article is to show how teachers, lacking equipment and funds, can construct a durable 3-D model reference frame and a model gravity…

  19. Inferential modeling of 3D chromatin structure.

    PubMed

    Wang, Siyu; Xu, Jinbo; Zeng, Jianyang

    2015-04-30

    For eukaryotic cells, the biological processes involving regulatory DNA elements play an important role in cell cycle. Understanding 3D spatial arrangements of chromosomes and revealing long-range chromatin interactions are critical to decipher these biological processes. In recent years, chromosome conformation capture (3C) related techniques have been developed to measure the interaction frequencies between long-range genome loci, which have provided a great opportunity to decode the 3D organization of the genome. In this paper, we develop a new Bayesian framework to derive the 3D architecture of a chromosome from 3C-based data. By modeling each chromosome as a polymer chain, we define the conformational energy based on our current knowledge on polymer physics and use it as prior information in the Bayesian framework. We also propose an expectation-maximization (EM) based algorithm to estimate the unknown parameters of the Bayesian model and infer an ensemble of chromatin structures based on interaction frequency data. We have validated our Bayesian inference approach through cross-validation and verified the computed chromatin conformations using the geometric constraints derived from fluorescence in situ hybridization (FISH) experiments. We have further confirmed the inferred chromatin structures using the known genetic interactions derived from other studies in the literature. Our test results have indicated that our Bayesian framework can compute an accurate ensemble of 3D chromatin conformations that best interpret the distance constraints derived from 3C-based data and also agree with other sources of geometric constraints derived from experimental evidence in the previous studies. The source code of our approach can be found in https://github.com/wangsy11/InfMod3DGen.

  20. RELAP5-3D Architectural Developments in 2004

    SciTech Connect

    Dr. George L. Mesina

    2004-08-01

    Currently, RELAP5 is undergoing a transformation that will replace much of its coding with equivalent structured Fortran 90 coding. Four efforts are underway to modernize the code architecture of RELAP5-3D. These are parallelization, vectorization, code restructuring, and conversion to Fortran 90. The first two improve code run speed via on computer platforms of certain architectures. These code modifications have little effect on normal code performance on non-vector and non-parallel computers because they are mostly done with compiler directives. The third and fourth efforts involve considerable rewriting of the source code. The third code improvement effort addresses code readability and maintainability. These are being greatly enhanced by application of a Fortran code-restructuring tool. The fourth effort is conversion to Fortran 90. The bulk of the coding is being rewritten in Fortran 90. This is a ground up reworking of the coding that begins with completely reorganizing the underlying database and continues with the source code. It will reach every part of RELAP5-3D. Each of these efforts is discussed in detail in a different section. Section 1 relates background information. Section 2 covers the parallelization effort. Section 3 covers the efforts to vectorize the code. Section 4 covers the code restructuring. Section 5 covers the Fortran 90 effort. Outline Background: longevity, maintenance & development, reliability, speed Parallelization: KAI to OpenMP, previous work & current, domain decomposition, done. Vectorization: Speed - Fed init, vectors in PCs, INL Cray SV1, R5 Phant, EXV, results. Code Restructuring: Reason to restructure, study of restruct, For Study: what it does, Fortran 90: Modernization -